Query 037262
Match_columns 107
No_of_seqs 146 out of 1144
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 10:25:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037262.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037262hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08246 Inhibitor_I29: Cathep 99.8 7E-21 1.5E-25 114.1 5.2 57 51-107 1-58 (58)
2 PTZ00203 cathepsin L protease; 99.8 1.2E-18 2.5E-23 136.7 9.0 63 45-107 32-94 (348)
3 smart00848 Inhibitor_I29 Cathe 99.7 4E-18 8.7E-23 100.9 6.2 56 51-106 1-57 (57)
4 PTZ00200 cysteine proteinase; 99.6 1.3E-15 2.8E-20 123.0 7.2 64 43-107 118-181 (448)
5 PTZ00021 falcipain-2; Provisio 99.6 1.3E-15 2.8E-20 124.0 6.5 63 45-107 163-226 (489)
6 KOG1542 Cysteine proteinase Ca 99.3 1.1E-12 2.4E-17 102.6 4.8 61 47-107 67-128 (372)
7 KOG1543 Cysteine proteinase Ca 98.4 8.6E-07 1.9E-11 69.2 5.9 53 55-107 30-83 (325)
8 PF15240 Pro-rich: Proline-ric 84.0 0.9 2E-05 33.1 2.3 18 9-26 1-18 (179)
9 PF08127 Propeptide_C1: Peptid 75.1 1.2 2.6E-05 24.8 0.4 25 80-105 4-28 (41)
10 PF14940 TMEM219: Transmembran 43.3 36 0.00078 25.6 3.5 20 42-61 37-56 (223)
11 PF05984 Cytomega_UL20A: Cytom 34.9 43 0.00094 21.7 2.4 14 3-16 1-14 (100)
12 PF10907 DUF2749: Protein of u 32.3 33 0.00072 21.1 1.5 13 9-21 5-17 (66)
13 COG5510 Predicted small secret 30.9 66 0.0014 18.2 2.4 8 9-16 7-14 (44)
14 PF08139 LPAM_1: Prokaryotic m 28.1 88 0.0019 15.5 2.4 18 8-25 6-23 (25)
15 TIGR03044 PS_II_psb27 photosys 25.5 97 0.0021 21.6 3.1 39 45-85 66-104 (135)
16 PF07948 Nairovirus_M: Nairovi 24.8 24 0.00053 30.1 0.0 21 2-23 577-597 (645)
17 PF05887 Trypan_PARP: Procycli 23.9 26 0.00056 24.6 0.0 14 5-18 4-17 (143)
18 PRK11097 endo-1,4-D-glucanase; 20.6 86 0.0019 25.4 2.4 8 51-58 28-35 (376)
19 KOG4404 Tandem pore domain K+ 20.6 2E+02 0.0043 23.2 4.3 42 44-88 35-76 (350)
20 PF02419 PsbL: PsbL protein; 20.5 1.4E+02 0.0029 16.3 2.4 19 3-21 12-31 (37)
21 PLN02682 pectinesterase family 20.2 1.7E+02 0.0036 23.7 3.9 11 47-57 39-49 (369)
No 1
>PF08246 Inhibitor_I29: Cathepsin propeptide inhibitor domain (I29); InterPro: IPR013201 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This entry represents a peptidase inhibitor domain, which belongs to MEROPS peptidase inhibitor family I29. The domain is also found at the N terminus of a variety of peptidase precursors that belong to MEROPS peptidase subfamily C1A; these include cathepsin L, papain, and procaricain (P10056 from SWISSPROT) []. It forms an alpha-helical domain that runs through the substrate-binding site, preventing access. Removal of this region by proteolytic cleavage results in activation of the enzyme. This domain is also found, in one or more copies, in a variety of cysteine peptidase inhibitors such as salarin [].; PDB: 3QT4_A 3QJ3_A 2C0Y_A 2L95_A 1CJL_A 1CS8_A 7PCK_A 1BY8_A 1PCI_A 2O6X_A ....
Probab=99.83 E-value=7e-21 Score=114.06 Aligned_cols=57 Identities=56% Similarity=0.941 Sum_probs=50.5
Q ss_pred HHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHHh-cCCCCceeecccCCCCCcccC
Q 037262 51 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHN-SENRTYKVGLNRFADLTNEEY 107 (107)
Q Consensus 51 F~~f~~~~~K~Y~~~~E~~~R~~~F~~N~~~I~~hN-~~~~sy~lglN~FaDlT~eEf 107 (107)
|+.|+.+|+|.|.++.|+..|+.+|++|++.|.+|| ....+|++|+|+|||||++||
T Consensus 1 F~~~~~~~~k~Y~~~~e~~~R~~~F~~N~~~I~~~N~~~~~~~~~~~N~fsD~t~eEf 58 (58)
T PF08246_consen 1 FEQFKKKYGKSYKSAEEEARRFAIFKENLRRIEEHNANGNNTYKLGLNQFSDMTPEEF 58 (58)
T ss_dssp HHHHHHHCT---SSHHHHHHHHHHHHHHHHHHHHHHHTTSSSEEE-SSTTTTSSHHHH
T ss_pred CHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEeCccccCcChhhC
Confidence 789999999999999999999999999999999999 557899999999999999997
No 2
>PTZ00203 cathepsin L protease; Provisional
Probab=99.77 E-value=1.2e-18 Score=136.74 Aligned_cols=63 Identities=30% Similarity=0.598 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHHhcCCCCceeecccCCCCCcccC
Q 037262 45 DEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEY 107 (107)
Q Consensus 45 ~~~~~~F~~f~~~~~K~Y~~~~E~~~R~~~F~~N~~~I~~hN~~~~sy~lglN~FaDlT~eEf 107 (107)
..+...|++|+.+|+|.|.+..|+.+|+.+|++|++.|++||+++.+|++|+|+|+|||+|||
T Consensus 32 ~~~~~~f~~~~~~~~K~Y~~~~E~~~R~~iF~~N~~~I~~~N~~~~~~~lg~N~FaDlT~eEf 94 (348)
T PTZ00203 32 TPAAALFEEFKRTYQRAYGTLTEEQQRLANFERNLELMREHQARNPHARFGITKFFDLSEAEF 94 (348)
T ss_pred cHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCCCeEEeccccccCCHHHH
Confidence 446678999999999999998899999999999999999999877799999999999999997
No 3
>smart00848 Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29). This domain is found at the N-terminus of some C1 peptidases such as Cathepsin L where it acts as a propeptide. There are also a number of proteins that are composed solely of multiple copies of this domain such as the peptidase inhibitor salarin. This family is classified as I29 by MEROPS. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a s
Probab=99.75 E-value=4e-18 Score=100.90 Aligned_cols=56 Identities=61% Similarity=1.053 Sum_probs=52.9
Q ss_pred HHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHHhcC-CCCceeecccCCCCCccc
Q 037262 51 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSE-NRTYKVGLNRFADLTNEE 106 (107)
Q Consensus 51 F~~f~~~~~K~Y~~~~E~~~R~~~F~~N~~~I~~hN~~-~~sy~lglN~FaDlT~eE 106 (107)
|+.|+.+|+|.|.+..|...|+.+|.+|++.|..||.. ..+|++|+|+|||||++|
T Consensus 1 f~~~~~~~~k~y~~~~e~~~r~~~f~~n~~~i~~~N~~~~~~~~~~~N~fsDlt~eE 57 (57)
T smart00848 1 FEQWKKKYGKSYSSEEEELRRFEIFKENLKFIEEHNKKNDHSYTLGLNQFADLTNEE 57 (57)
T ss_pred ChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEecCcccccCCCCC
Confidence 67899999999999999999999999999999999976 479999999999999987
No 4
>PTZ00200 cysteine proteinase; Provisional
Probab=99.61 E-value=1.3e-15 Score=122.99 Aligned_cols=64 Identities=30% Similarity=0.481 Sum_probs=59.0
Q ss_pred ChHHHHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHHhcCCCCceeecccCCCCCcccC
Q 037262 43 TDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEY 107 (107)
Q Consensus 43 ~~~~~~~~F~~f~~~~~K~Y~~~~E~~~R~~~F~~N~~~I~~hN~~~~sy~lglN~FaDlT~eEf 107 (107)
.+.++...|++|+.+|+|.|.+..|+.+|+.+|++|++.|++||. +.+|++|+|+|||||+|||
T Consensus 118 ~e~e~~~~F~~f~~ky~K~Y~~~~E~~~R~~iF~~Nl~~I~~hN~-~~~y~lgiN~FsDlT~eEF 181 (448)
T PTZ00200 118 LEFEVYLEFEEFNKKYNRKHATHAERLNRFLTFRNNYLEVKSHKG-DEPYSKEINKFSDLTEEEF 181 (448)
T ss_pred chHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHhcC-cCCeEEeccccccCCHHHH
Confidence 356677899999999999999999999999999999999999996 4689999999999999997
No 5
>PTZ00021 falcipain-2; Provisional
Probab=99.60 E-value=1.3e-15 Score=123.97 Aligned_cols=63 Identities=41% Similarity=0.660 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHHhcC-CCCceeecccCCCCCcccC
Q 037262 45 DEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSE-NRTYKVGLNRFADLTNEEY 107 (107)
Q Consensus 45 ~~~~~~F~~f~~~~~K~Y~~~~E~~~R~~~F~~N~~~I~~hN~~-~~sy~lglN~FaDlT~eEf 107 (107)
.+....|++|+.+|+|+|.+.+|+..|+.+|.+|+++|++||.+ +.+|++|+|+|+|||+|||
T Consensus 163 ~e~~~~F~~wk~ky~K~Y~~~eE~~~R~~iF~~Nl~~Ie~hN~~~~~ty~lgiNqFsDlT~EEF 226 (489)
T PTZ00021 163 LENVNSFYLFIKEHGKKYQTPDEMQQRYLSFVENLAKINAHNNKENVLYKKGMNRFGDLSFEEF 226 (489)
T ss_pred hHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCEEEeccccccCCHHHH
Confidence 45567899999999999999899999999999999999999976 5799999999999999997
No 6
>KOG1542 consensus Cysteine proteinase Cathepsin F [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=1.1e-12 Score=102.64 Aligned_cols=61 Identities=30% Similarity=0.569 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHHhcCCC-CceeecccCCCCCcccC
Q 037262 47 VMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENR-TYKVGLNRFADLTNEEY 107 (107)
Q Consensus 47 ~~~~F~~f~~~~~K~Y~~~~E~~~R~~~F~~N~~~I~~hN~~~~-sy~lglN~FaDlT~eEf 107 (107)
....|..|+.+|+|+|.+.+|..+|+.+|++|+..+++++.... +..+|+|+|||||+|||
T Consensus 67 ~~~~F~~F~~kf~r~Y~s~eE~~~Rl~iF~~N~~~a~~~q~~d~gsA~yGvtqFSDlT~eEF 128 (372)
T KOG1542|consen 67 LEDSFKLFTIKFGRSYASREEHAHRLSIFKHNLLRAERLQENDPGSAEYGVTQFSDLTEEEF 128 (372)
T ss_pred hHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHHHHHHHhhhcCccccccCccchhhcCHHHH
Confidence 47899999999999999999999999999999999999888754 89999999999999997
No 7
>KOG1543 consensus Cysteine proteinase Cathepsin L [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=8.6e-07 Score=69.25 Aligned_cols=53 Identities=49% Similarity=0.686 Sum_probs=47.8
Q ss_pred HHHhCCccCChHHHHHHHHHHHHHHHHHHHHhcC-CCCceeecccCCCCCcccC
Q 037262 55 LVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSE-NRTYKVGLNRFADLTNEEY 107 (107)
Q Consensus 55 ~~~~~K~Y~~~~E~~~R~~~F~~N~~~I~~hN~~-~~sy~lglN~FaDlT~eEf 107 (107)
+.+|.+.|.+..|...|+.+|.+|++.|..||.. ..+|.+|+|+|+|+|.+||
T Consensus 30 ~~~~~~~y~~~~~~~~r~~~f~~n~~~~~~~n~~~~~~~~~g~n~~~d~~~ee~ 83 (325)
T KOG1543|consen 30 LVKFLKRYEDRVEKKARRAIFKENLQKIESHNLKYVLSFLMGVNQFADLTTEEF 83 (325)
T ss_pred hhhhccccccHHHHHHHHHHHHHHHHHHHhhhhhhceeeeeccccccccchHHH
Confidence 6777788877788889999999999999999997 8999999999999999875
No 8
>PF15240 Pro-rich: Proline-rich
Probab=84.02 E-value=0.9 Score=33.10 Aligned_cols=18 Identities=22% Similarity=0.189 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHhhcccc
Q 037262 9 MAMFLLFLFTVSSALDMS 26 (107)
Q Consensus 9 ~~~~l~~~~a~~~~~~~~ 26 (107)
||+|||.++.+++++|=+
T Consensus 1 MLlVLLSvALLALSSAQ~ 18 (179)
T PF15240_consen 1 MLLVLLSVALLALSSAQS 18 (179)
T ss_pred ChhHHHHHHHHHhhhccc
Confidence 567777665555544443
No 9
>PF08127 Propeptide_C1: Peptidase family C1 propeptide; InterPro: IPR012599 This domain is found at the N-terminal of cathepsin B and cathepsin B-like peptidases that belong to MEROPS peptidase subfamily C1A. Cathepsin B are lysosomal cysteine proteinases belonging to the papain superfamily and are unique in their ability to act as both an endo- and an exopeptidases. They are synthesized as inactive zymogens. Activation of the peptidases occurs with the removal of the propeptide [, ]. ; GO: 0004197 cysteine-type endopeptidase activity, 0050790 regulation of catalytic activity; PDB: 1MIR_A 1PBH_A 2PBH_A 3PBH_A.
Probab=75.14 E-value=1.2 Score=24.79 Aligned_cols=25 Identities=48% Similarity=0.671 Sum_probs=14.5
Q ss_pred HHHHHHhcCCCCceeecccCCCCCcc
Q 037262 80 RFIDEHNSENRTYKVGLNRFADLTNE 105 (107)
Q Consensus 80 ~~I~~hN~~~~sy~lglN~FaDlT~e 105 (107)
++|+..|+.+.+++-|.| |.+.|.+
T Consensus 4 e~I~~IN~~~~tWkAG~N-F~~~~~~ 28 (41)
T PF08127_consen 4 EFIDYINSKNTTWKAGRN-FENTSIE 28 (41)
T ss_dssp HHHHHHHHCT-SEEE-----SSB-HH
T ss_pred HHHHHHHcCCCcccCCCC-CCCCCHH
Confidence 567778877889999999 8777643
No 10
>PF14940 TMEM219: Transmembrane 219
Probab=43.29 E-value=36 Score=25.62 Aligned_cols=20 Identities=5% Similarity=0.218 Sum_probs=16.0
Q ss_pred CChHHHHHHHHHHHHHhCCc
Q 037262 42 RTDDEVMAMFEAWLVKHGKA 61 (107)
Q Consensus 42 ~~~~~~~~~F~~f~~~~~K~ 61 (107)
..+.++.+.|..|..++++-
T Consensus 37 l~nPDi~~DWN~fL~~ls~l 56 (223)
T PF14940_consen 37 LKNPDIPQDWNTFLLSLSQL 56 (223)
T ss_pred CCcccchhhHHHHHHhhcCe
Confidence 45567889999999998864
No 11
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=34.89 E-value=43 Score=21.73 Aligned_cols=14 Identities=14% Similarity=0.067 Sum_probs=6.8
Q ss_pred CCchhHHHHHHHHH
Q 037262 3 LFRSPTMAMFLLFL 16 (107)
Q Consensus 3 ~~~~~~~~~~l~~~ 16 (107)
|+|+.++|.+|.+.
T Consensus 1 MaRRlwiLslLAVt 14 (100)
T PF05984_consen 1 MARRLWILSLLAVT 14 (100)
T ss_pred CchhhHHHHHHHHH
Confidence 35655444444444
No 12
>PF10907 DUF2749: Protein of unknown function (DUF2749); InterPro: IPR024475 This bacterial family of proteins represent the TrbJ and TrbK genes of the Ti plasmid conjugative transfer operon [].
Probab=32.32 E-value=33 Score=21.06 Aligned_cols=13 Identities=8% Similarity=0.225 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHh
Q 037262 9 MAMFLLFLFTVSS 21 (107)
Q Consensus 9 ~~~~l~~~~a~~~ 21 (107)
+++.|++++|+.+
T Consensus 5 viIaL~~avaa~a 17 (66)
T PF10907_consen 5 VIIALVVAVAAAA 17 (66)
T ss_pred hhHHHHHHHHhhh
Confidence 4555555555443
No 13
>COG5510 Predicted small secreted protein [Function unknown]
Probab=30.85 E-value=66 Score=18.21 Aligned_cols=8 Identities=25% Similarity=0.567 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 037262 9 MAMFLLFL 16 (107)
Q Consensus 9 ~~~~l~~~ 16 (107)
++++++++
T Consensus 7 l~i~~vll 14 (44)
T COG5510 7 LLIALVLL 14 (44)
T ss_pred HHHHHHHH
Confidence 44444444
No 14
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=28.06 E-value=88 Score=15.53 Aligned_cols=18 Identities=17% Similarity=0.115 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHhhccc
Q 037262 8 TMAMFLLFLFTVSSALDM 25 (107)
Q Consensus 8 ~~~~~l~~~~a~~~~~~~ 25 (107)
|+.=||+.++|+...+++
T Consensus 6 mmKkil~~l~a~~~LagC 23 (25)
T PF08139_consen 6 MMKKILFPLLALFMLAGC 23 (25)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 344455555555545555
No 15
>TIGR03044 PS_II_psb27 photosystem II protein Psb27. Members of this family are the Psb27 protein of the cyanobacterial photosynthetic supracomplex, photosystem II. Although most protein components of both cyanobacterial and chloroplast versions of photosystem II are closely related and described together by single model families, this family is strictly bacterial. Some uncharacterized proteins with highly divergent sequences, from Arabidopsis, score between trusted and noise cutoffs for this model but are not at this time assigned as functionally equivalent photosystem II proteins.
Probab=25.48 E-value=97 Score=21.62 Aligned_cols=39 Identities=13% Similarity=0.255 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHH
Q 037262 45 DEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEH 85 (107)
Q Consensus 45 ~~~~~~F~~f~~~~~K~Y~~~~E~~~R~~~F~~N~~~I~~h 85 (107)
.+..+.=++|+.+|.+.=.... ..-|.....-+.-+..|
T Consensus 66 ~~ar~~indyvsrYRr~~~v~g--~~SFttm~TALNsLAGH 104 (135)
T TIGR03044 66 AEARQLINDYISRYRRRPRVNG--LSSFTTMQTALNSLAGH 104 (135)
T ss_pred HHHHHHHHHHHHHhcCCCCcCC--cccHHHHHHHHHHHHHH
Confidence 3455677889999976532111 11344444444444444
No 16
>PF07948 Nairovirus_M: Nairovirus M polyprotein-like; InterPro: IPR012487 The sequences in this family are similar to the Dugbe virus (Dugbe nairovirus) M polyprotein precursor (Q02004 from SWISSPROT), which includes glycoproteins G1 and G2. Both are thought to be inserted in the membrane of the Golgi complex of the infected host cell, and G1 is known to have a role in infection of vertebrate hosts []. ; PDB: 2L7X_A.
Probab=24.78 E-value=24 Score=30.07 Aligned_cols=21 Identities=43% Similarity=0.461 Sum_probs=0.0
Q ss_pred CCCchhHHHHHHHHHHHHHhhc
Q 037262 2 GLFRSPTMAMFLLFLFTVSSAL 23 (107)
Q Consensus 2 ~~~~~~~~~~~l~~~~a~~~~~ 23 (107)
.++|++ |+++||+|+.++.++
T Consensus 577 ~LKR~s-Wl~vLLiLl~vsisP 597 (645)
T PF07948_consen 577 ALKRSS-WLIVLLILLTVSISP 597 (645)
T ss_dssp ----------------------
T ss_pred hhhhhH-HHHHHHHHHHhhccc
Confidence 466776 778888886655544
No 17
>PF05887 Trypan_PARP: Procyclic acidic repetitive protein (PARP); InterPro: IPR008882 This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of T. brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated [].; GO: 0016020 membrane; PDB: 2X34_B 2X32_B.
Probab=23.92 E-value=26 Score=24.60 Aligned_cols=14 Identities=29% Similarity=0.278 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHH
Q 037262 5 RSPTMAMFLLFLFT 18 (107)
Q Consensus 5 ~~~~~~~~l~~~~a 18 (107)
|+..+|+|||+..+
T Consensus 4 r~l~~LavLL~~A~ 17 (143)
T PF05887_consen 4 RHLCLLAVLLFGAA 17 (143)
T ss_dssp --------------
T ss_pred cccccccccccccc
Confidence 45556677776633
No 18
>PRK11097 endo-1,4-D-glucanase; Provisional
Probab=20.63 E-value=86 Score=25.37 Aligned_cols=8 Identities=13% Similarity=0.214 Sum_probs=3.5
Q ss_pred HHHHHHHh
Q 037262 51 FEAWLVKH 58 (107)
Q Consensus 51 F~~f~~~~ 58 (107)
|+.|+.+|
T Consensus 28 W~~~k~~f 35 (376)
T PRK11097 28 WEQFKKDY 35 (376)
T ss_pred HHHHHHHh
Confidence 44444443
No 19
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=20.58 E-value=2e+02 Score=23.19 Aligned_cols=42 Identities=14% Similarity=0.206 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHHhcC
Q 037262 44 DDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSE 88 (107)
Q Consensus 44 ~~~~~~~F~~f~~~~~K~Y~~~~E~~~R~~~F~~N~~~I~~hN~~ 88 (107)
+......+++=+.++.++|.-.+|+ +..|..-...-+.||.+
T Consensus 35 E~~~r~~l~~~~~~~~~kyn~s~~d---~r~~er~i~~s~ph~ag 76 (350)
T KOG4404|consen 35 EARERERLERRLANLKRKYNLSEED---YRELERVILKSEPHKAG 76 (350)
T ss_pred hHHHHHHHHHHHHHHHHhhCCCHHH---HHHHHHHHHhcCccccc
Confidence 3445556666666666666533332 34444444444556653
No 20
>PF02419 PsbL: PsbL protein; InterPro: IPR003372 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbL found in PSII. PsbL is located in a gene cluster with PsbE, PsbF and PsbJ (PsbEFJL). Both PsbL and PsbJ (IPR002682 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbL prevent the formation of both PSII core dimers and PSII-light harvesting complex []. In addition, both PsbL and PsbJ are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_L 3A0B_l 3ARC_l 1S5L_l 2AXT_l 3BZ2_L 4FBY_L 3PRQ_L 3PRR_L 3KZI_L ....
Probab=20.50 E-value=1.4e+02 Score=16.28 Aligned_cols=19 Identities=26% Similarity=0.230 Sum_probs=9.8
Q ss_pred CCchhHHHHHHHHH-HHHHh
Q 037262 3 LFRSPTMAMFLLFL-FTVSS 21 (107)
Q Consensus 3 ~~~~~~~~~~l~~~-~a~~~ 21 (107)
+-|.+++|-+||++ +++..
T Consensus 12 LNRTSLY~GLllifvl~vLF 31 (37)
T PF02419_consen 12 LNRTSLYWGLLLIFVLAVLF 31 (37)
T ss_dssp --CCHHHHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHHHHh
Confidence 45667776665555 44443
No 21
>PLN02682 pectinesterase family protein
Probab=20.19 E-value=1.7e+02 Score=23.68 Aligned_cols=11 Identities=18% Similarity=0.320 Sum_probs=7.6
Q ss_pred HHHHHHHHHHH
Q 037262 47 VMAMFEAWLVK 57 (107)
Q Consensus 47 ~~~~F~~f~~~ 57 (107)
....|.+|...
T Consensus 39 ~~~~~~~w~~~ 49 (369)
T PLN02682 39 PEEQFMKWVRF 49 (369)
T ss_pred hhHHHHHHHHH
Confidence 35678888864
Done!