BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037264
(249 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp
Length = 413
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 73/161 (45%), Gaps = 11/161 (6%)
Query: 95 YYLGLTGISVGGDLLPISETAFKIDESGNGGIIVDSGTAVTRLQTETYNALRDAFVR--G 152
Y++G+ I + ++ ++ + I +G GG + + T L+T Y A+ +AF++
Sbjct: 237 YFIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESA 296
Query: 153 TRALSPTDGVALFDTCYD----FSSRSSVEVPTVSFHFP-EGKVLPLPAKNYLIPVDSNG 207
R ++ VA F C+ S+R VP++ E V + N ++ ++ N
Sbjct: 297 ARNITRVASVAPFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDN- 355
Query: 208 TFCFAFAPTSSSLS---IIGNVQQQGTRVSFNLRNSLIGFT 245
C S+L +IG Q + V F+L S +GF+
Sbjct: 356 VVCLGVVDGGSNLRTSIVIGGHQLEDNLVQFDLATSRVGFS 396
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp
pdb|3VLB|C Chain C, Crystal Structure Of Xeg-Edgp
Length = 413
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 73/161 (45%), Gaps = 11/161 (6%)
Query: 95 YYLGLTGISVGGDLLPISETAFKIDESGNGGIIVDSGTAVTRLQTETYNALRDAFVR--G 152
Y++G+ I + ++ ++ + I +G GG + + T L+T Y A+ +AF++
Sbjct: 237 YFIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESA 296
Query: 153 TRALSPTDGVALFDTCYD----FSSRSSVEVPTVSFHFP-EGKVLPLPAKNYLIPVDSNG 207
R ++ VA F C+ S+R VP++ E V + N ++ ++ N
Sbjct: 297 ARNITRVASVAPFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDN- 355
Query: 208 TFCFAFAPTSSSLS---IIGNVQQQGTRVSFNLRNSLIGFT 245
C S+L +IG Q + V F+L S +GF+
Sbjct: 356 VVCLGVVDGGSNLRTSIVIGGHQLEDNLVQFDLATSRVGFS 396
>pdb|3HD8|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
pdb|3HD8|C Chain C, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
Length = 389
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 68/171 (39%), Gaps = 28/171 (16%)
Query: 95 YYLGLTGISVGGDLLPISETAFKIDESGNGGIIVDSGTAVTRLQTETYNALRDAFVRGTR 154
+Y+ I V +PISE A GG+++ + L+ + Y L DAF +
Sbjct: 208 HYISARSIKVENTRVPISERAL-----ATGGVMLSTRLPYVLLRRDVYRPLVDAFTKALA 262
Query: 155 ALSPTDG---------VALFDTCYDFSSRSS----VEVPTVSFHFPEGKVLPLPAKNYLI 201
A P +G VA F+ CYD + + VP V G + KN ++
Sbjct: 263 A-QPANGAPVARAVKPVAPFELCYDTKTLGNNPGGYWVPNVLLELDGGSDWAMTGKNSMV 321
Query: 202 PVDSNGTFCFAFAPT--------SSSLSIIGNVQQQGTRVSFNLRNSLIGF 244
V GT C AF S+ I+G Q + + F++ +GF
Sbjct: 322 DVKP-GTACVAFVEMKGVDAGDGSAPAVILGGAQMEDFVLDFDMEKKRLGF 371
>pdb|1T6E|X Chain X, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor I
pdb|1T6G|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
pdb|1T6G|B Chain B, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
Length = 381
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 65/171 (38%), Gaps = 26/171 (15%)
Query: 95 YYLGLTGISVGGDLLPISETAFKIDESGNGGIIVDSGTAVTRLQTETYNALRDAFVR--- 151
+Y+ I VG +P+ E A GG+++ + L+ + Y L DAF +
Sbjct: 206 HYISARSIVVGDTRVPVPEGALA-----TGGVMLSTRLPYVLLRPDVYRPLMDAFTKALA 260
Query: 152 -----GTRALSPTDGVALFDTCYDFSSRSS----VEVPTVSFHFPEGKVLPLPAKNYLIP 202
G + VA F CYD + + VP V G + KN ++
Sbjct: 261 AQHANGAPVARAVEAVAPFGVCYDTKTLGNNLGGYAVPNVQLGLDGGSDWTMTGKNSMVD 320
Query: 203 VDSNGTFCFAFAPTSSSLS--------IIGNVQQQGTRVSFNLRNSLIGFT 245
V GT C AF + I+G Q + + F++ +GF+
Sbjct: 321 VK-QGTACVAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKRLGFS 370
>pdb|2EWY|A Chain A, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|B Chain B, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|C Chain C, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|D Chain D, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
Length = 383
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 76/170 (44%), Gaps = 19/170 (11%)
Query: 92 DTFYYLGLTGISVGGDLLPISETAFKIDESGNGGIIVDSGTAVTRLQTETYNALRDAFVR 151
+ +Y + + + +GG L + + D++ IVDSGT + RL + ++A+ +A R
Sbjct: 194 EWYYQIEILKLEIGGQSLNLDCREYNADKA-----IVDSGTTLLRLPQKVFDAVVEAVAR 248
Query: 152 GTRALSPTDGVALFD--TCYDFSSRSSVEVPTVSFHFPEG------KVLPLPAKNYLIPV 203
+ +DG C+ S P +S + + ++ LP + Y+ P+
Sbjct: 249 ASLIPEFSDGFWTGSQLACWTNSETPWSYFPKISIYLRDENSSRSFRITILP-QLYIQPM 307
Query: 204 DSNG----TFCFAFAPTSSSLSIIGNVQQQGTRVSFNLRNSLIGFTPNKC 249
G + F +P++++L +IG +G V F+ +GF + C
Sbjct: 308 MGAGLNYECYRFGISPSTNAL-VIGATVMEGFYVIFDRAQKRVGFAASPC 356
>pdb|2B42|A Chain A, Crystal Structure Of The Triticum Xylanse Inhibitor-I In
Complex With Bacillus Subtilis Xylanase
Length = 381
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 64/171 (37%), Gaps = 26/171 (15%)
Query: 95 YYLGLTGISVGGDLLPISETAFKIDESGNGGIIVDSGTAVTRLQTETYNALRDAFVR--- 151
+Y+ I VG +P+ E A GG+++ + L+ + Y L DAF +
Sbjct: 206 HYISARSIVVGDTRVPVPEGALA-----TGGVMLSTRLPYVLLRPDVYRPLMDAFTKALA 260
Query: 152 -----GTRALSPTDGVALFDTCYDFSSRSS----VEVPTVSFHFPEGKVLPLPAKNYLIP 202
G VA F CYD + + VP V G + KN ++
Sbjct: 261 AQHANGAPVARAVVAVAPFGVCYDTKTLGNNLGGYAVPNVQLGLDGGSDWTMTGKNSMVD 320
Query: 203 VDSNGTFCFAFAPTSSSLS--------IIGNVQQQGTRVSFNLRNSLIGFT 245
V GT C AF + I+G Q + + F++ +GF+
Sbjct: 321 VK-QGTACVAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKRLGFS 370
>pdb|3AUP|A Chain A, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|B Chain B, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|C Chain C, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|D Chain D, Crystal Structure Of Basic 7s Globulin From Soybean
Length = 403
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/141 (19%), Positives = 56/141 (39%), Gaps = 4/141 (2%)
Query: 108 LLPISETAFKIDESGNGGIIVDSGTAVTRLQTETYNALRDAFVRGTRALSPTDGVALFDT 167
+ P+++ + I S +GG ++ + T LQ Y A F + + VA F
Sbjct: 244 VFPLNKISSTIVGSTSGGTMISTSTPHMVLQQSVYQAFTQVFAQQLPKQAQVKSVAPFGL 303
Query: 168 CYDFSSRSSVEVPTVSFHFPEGKVLPLPAKNYLIPVDSNGTFCFAF---APTSSSLSIIG 224
C++ + ++ + P G V + ++ ++ G C + +G
Sbjct: 304 CFNSNKINAYPSVDLVMDKPNGPVWRISGEDLMVQAQP-GVTCLGVMNGGMQPRAEITLG 362
Query: 225 NVQQQGTRVSFNLRNSLIGFT 245
Q + V F+L S +GF+
Sbjct: 363 ARQLEENLVVFDLARSRVGFS 383
>pdb|2QZW|A Chain A, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
pdb|2QZW|B Chain B, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
Length = 341
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 13/130 (10%)
Query: 78 PNAVTAPLLRNHELDTFYYLGLTGISVGGDL-LPISETAFKI---DESGNGGIIVDSGTA 133
PNA T ++ Y L + V D L I+ + K + +GN +++DSGT
Sbjct: 162 PNAATGQIIFGGVDKAKYSGSLIAVPVTSDRELRITLNSLKAVGKNINGNIDVLLDSGTT 221
Query: 134 VTRLQTETYNALRDAFVRGTRALSPTDGVALFDTCYDFSSRSSVEVPTVSFHFPEGKVLP 193
+T LQ + + DAF +A +DG T Y ++S TV F+F +
Sbjct: 222 ITYLQQDVAQDIIDAF----QAELKSDGQG--HTFYVTDCQTS---GTVDFNFDNNAKIS 272
Query: 194 LPAKNYLIPV 203
+PA + P+
Sbjct: 273 VPASEFTAPL 282
>pdb|3TGO|C Chain C, Crystal Structure Of The E. Coli Bamcd Complex
pdb|3TGO|D Chain D, Crystal Structure Of The E. Coli Bamcd Complex
Length = 323
Score = 30.8 bits (68), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 179 VPTVSFHFPEGKVLPLPAKNYLIPVDSNGTFCFAFA----PTSSSLSIIGNVQQQ 229
P H P G +LP+ + +Y IPV +NG+ A P + L+++ + Q
Sbjct: 24 APLAELHAPAGMILPVTSGDYAIPV-TNGSGAVGKALDIRPPAQPLALVSGARTQ 77
>pdb|3THW|B Chain B, Human Mutsbeta Complexed With An Idl Of 4 Bases (Loop4)
And Adp
pdb|3THX|B Chain B, Human Mutsbeta Complexed With An Idl Of 3 Bases (Loop3)
And Adp
pdb|3THY|B Chain B, Human Mutsbeta Complexed With An Idl Of 2 Bases (Loop2)
And Adp
pdb|3THZ|B Chain B, Human Mutsbeta Complexed With An Idl Of 6 Bases (Loop6)
And Adp
Length = 918
Score = 30.0 bits (66), Expect = 1.4, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 12/96 (12%)
Query: 104 VGGDLLPISETAFKIDESGN-GGIIVDSGTAVTRLQTETYNALRDA-----FVRGTRALS 157
+G D+ P+ K+D++ N I+ D+ T+ +E +RD F+ G +
Sbjct: 124 IGEDVNPL----IKLDDAVNVDEIMTDTSTSYLLCISENKENVRDKKKGNIFI-GIVGVQ 178
Query: 158 PTDGVALFDTCYDFSSRSSVEVPTVSFHFPEGKVLP 193
P G +FD+ D +SRS +E S P +LP
Sbjct: 179 PATGEVVFDSFQDSASRSELETRMSSLQ-PVELLLP 213
>pdb|9PCY|A Chain A, High-Resolution Solution Structure Of Reduced French Bean
Plastocyanin And Comparison With The Crystal Structure
Of Poplar Plastocyanin
Length = 99
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 179 VPTVSFHFPEGKVLPLPAKNYLIPVDSNGTFCFAFAPTSSSLSIIGNV 226
V V PE ++L P + Y++ +D+ GT+ F +P + ++G V
Sbjct: 50 VDAVKISMPEEELLNAPGETYVVTLDTKGTYSFYCSPHQGA-GMVGKV 96
>pdb|2O7R|A Chain A, Plant Carboxylesterase Aecxe1 From Actinidia Eriantha With
Acyl Adduct
pdb|2O7V|A Chain A, Carboxylesterase Aecxe1 From Actinidia Eriantha Covalently
Inhibited By Paraoxon
Length = 338
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 95 YYLGLTGISVGGDLLPISETAFKIDESGNGG 125
Y+ GL +V +LLP+ +DE G GG
Sbjct: 176 YHAGLRAAAVADELLPLKIKGLVLDEPGFGG 206
>pdb|1EAG|A Chain A, Secreted Aspartic Proteinase (Sap2) From Candida Albicans
Complexed With A70450
pdb|3PVK|A Chain A, Secreted Aspartic Protease 2 In Complex With Benzamidine
pdb|3Q70|A Chain A, Secreted Aspartic Protease In Complex With Ritonavir
Length = 342
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 10/80 (12%)
Query: 113 ETAFKIDESGNGGIIVDSGTAVTRLQTETYNALRDAFVRGTRALSPTDGVALF------- 165
E + K + N +++DSGT +T LQ + + + AF + ++G + +
Sbjct: 202 EVSGKTINTDNVDVLLDSGTTITYLQQDLADQIIKAF--NGKLTQDSNGNSFYEVDCNLS 259
Query: 166 -DTCYDFSSRSSVEVPTVSF 184
D ++FS + + VP F
Sbjct: 260 GDVVFNFSKNAKISVPASEF 279
>pdb|3LJS|A Chain A, Crystal Structure Of Fructokinase From Xylella Fastidiosa
pdb|3LJS|B Chain B, Crystal Structure Of Fructokinase From Xylella Fastidiosa
pdb|3LKI|A Chain A, Crystal Structure Of Fructokinase With Bound Atp From
Xylella Fastidiosa
pdb|3LKI|B Chain B, Crystal Structure Of Fructokinase With Bound Atp From
Xylella Fastidiosa
Length = 338
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 136 RLQTETYNALRDAFVRG---TRALSPTDGVALFDTCYD 170
R+Q + NA DAFV G T A D AL D C+D
Sbjct: 251 RVQVQDSNAAGDAFVGGXLYTFAQQFDDAAALIDFCHD 288
>pdb|1ZAP|A Chain A, Secreted Aspartic Protease From C. Albicans
Length = 342
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 10/80 (12%)
Query: 113 ETAFKIDESGNGGIIVDSGTAVTRLQTETYNALRDAFVRGTRALSPTDGVALF------- 165
E + K + N +++DSGT +T LQ + + + AF + ++G + +
Sbjct: 202 EVSGKTINTDNVDVLLDSGTTITYLQQDLADQIIKAF--NGKLTQDSNGNSFYEVDCNLS 259
Query: 166 -DTCYDFSSRSSVEVPTVSF 184
D ++FS + + VP F
Sbjct: 260 GDVVFNFSKNAKISVPASDF 279
>pdb|1UAX|A Chain A, Crystal Structure Of The Ribonuclease H2 From Pyrococcus
Horikoshii Ot3
pdb|1UAX|B Chain B, Crystal Structure Of The Ribonuclease H2 From Pyrococcus
Horikoshii Ot3
Length = 220
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 24/54 (44%)
Query: 118 IDESGNGGIIVDSGTAVTRLQTETYNALRDAFVRGTRALSPTDGVALFDTCYDF 171
+DE+G G +I V + + LRD V+ ++ L+P LF D
Sbjct: 6 VDEAGRGPVIGPLVIGVAVIDEKNIERLRDIGVKDSKQLTPGQREKLFSKLIDI 59
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,603,580
Number of Sequences: 62578
Number of extensions: 253464
Number of successful extensions: 529
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 519
Number of HSP's gapped (non-prelim): 17
length of query: 249
length of database: 14,973,337
effective HSP length: 96
effective length of query: 153
effective length of database: 8,965,849
effective search space: 1371774897
effective search space used: 1371774897
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)