Query 037264
Match_columns 249
No_of_seqs 159 out of 1178
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 10:27:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037264.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037264hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05472 cnd41_like Chloroplast 100.0 8.9E-50 1.9E-54 340.2 26.8 244 1-249 48-299 (299)
2 cd05489 xylanase_inhibitor_I_l 100.0 3.7E-47 7.9E-52 330.7 24.7 245 1-247 83-361 (362)
3 PLN03146 aspartyl protease fam 100.0 5.1E-45 1.1E-49 323.8 25.1 241 1-249 174-428 (431)
4 cd05476 pepsin_A_like_plant Ch 100.0 4.7E-44 1E-48 299.9 22.5 211 1-249 45-265 (265)
5 cd05490 Cathepsin_D2 Cathepsin 100.0 5.1E-41 1.1E-45 289.4 21.4 222 1-246 77-325 (325)
6 cd05478 pepsin_A Pepsin A, asp 100.0 4E-41 8.6E-46 289.1 19.0 218 1-246 79-317 (317)
7 cd05474 SAP_like SAPs, pepsin- 100.0 1E-40 2.2E-45 283.8 19.6 225 1-247 44-295 (295)
8 cd05486 Cathespin_E Cathepsin 100.0 1.3E-40 2.8E-45 285.9 20.1 221 1-246 69-316 (316)
9 cd05488 Proteinase_A_fungi Fun 100.0 1.5E-40 3.3E-45 285.9 20.4 217 1-246 79-320 (320)
10 cd05477 gastricsin Gastricsins 100.0 2.3E-40 5E-45 284.5 20.9 221 1-247 72-318 (318)
11 PTZ00165 aspartyl protease; Pr 100.0 2.1E-40 4.6E-45 296.2 21.4 217 1-249 194-448 (482)
12 KOG1339 Aspartyl protease [Pos 100.0 1.6E-39 3.6E-44 286.7 25.7 240 1-249 135-396 (398)
13 cd06098 phytepsin Phytepsin, a 100.0 1.2E-39 2.6E-44 279.9 20.8 211 1-246 80-317 (317)
14 cd05475 nucellin_like Nucellin 100.0 1.5E-39 3.2E-44 273.8 20.7 198 1-249 54-273 (273)
15 cd05487 renin_like Renin stimu 100.0 1.9E-39 4.2E-44 279.6 21.0 221 1-247 79-326 (326)
16 cd05485 Cathepsin_D_like Cathe 100.0 5.2E-39 1.1E-43 277.2 21.6 221 1-246 82-329 (329)
17 cd06096 Plasmepsin_5 Plasmepsi 100.0 8.5E-39 1.8E-43 275.6 19.8 202 1-249 89-325 (326)
18 cd05473 beta_secretase_like Be 100.0 1.2E-38 2.7E-43 278.5 20.8 240 1-249 68-347 (364)
19 PTZ00147 plasmepsin-1; Provisi 100.0 1.2E-37 2.6E-42 276.6 20.2 218 1-248 208-450 (453)
20 PTZ00013 plasmepsin 4 (PM4); P 100.0 2.5E-37 5.4E-42 274.1 20.7 218 1-248 207-449 (450)
21 PF00026 Asp: Eukaryotic aspar 100.0 1E-35 2.3E-40 255.1 15.7 221 1-247 71-317 (317)
22 cd06097 Aspergillopepsin_like 100.0 2.7E-35 5.9E-40 248.5 16.2 188 1-246 71-278 (278)
23 cd05471 pepsin_like Pepsin-lik 100.0 5.7E-33 1.2E-37 234.3 17.9 194 1-246 71-283 (283)
24 PF14541 TAXi_C: Xylanase inhi 100.0 7.7E-31 1.7E-35 203.9 14.4 151 94-246 1-161 (161)
25 PF14543 TAXi_N: Xylanase inhi 99.4 1.4E-13 3E-18 107.2 5.2 74 1-74 83-164 (164)
26 cd05470 pepsin_retropepsin_lik 97.8 1.8E-05 3.9E-10 56.9 3.7 39 1-39 68-109 (109)
27 cd05479 RP_DDI RP_DDI; retrope 96.7 0.0073 1.6E-07 44.6 6.6 27 218-244 98-124 (124)
28 TIGR02281 clan_AA_DTGA clan AA 96.3 0.14 3E-06 37.6 11.2 35 93-145 10-44 (121)
29 TIGR03698 clan_AA_DTGF clan AA 96.0 0.043 9.4E-07 39.3 7.4 24 219-242 84-107 (107)
30 PF08284 RVP_2: Retroviral asp 95.5 0.029 6.4E-07 42.0 4.8 30 218-247 103-132 (135)
31 cd05484 retropepsin_like_LTR_2 91.5 0.37 8.1E-06 33.1 4.2 29 102-145 5-33 (91)
32 PF13650 Asp_protease_2: Aspar 91.4 0.3 6.5E-06 33.0 3.7 20 126-145 12-31 (90)
33 cd05483 retropepsin_like_bacte 89.4 0.77 1.7E-05 31.3 4.4 20 126-145 16-35 (96)
34 cd06095 RP_RTVL_H_like Retrope 87.1 0.9 1.9E-05 30.9 3.4 29 102-145 3-31 (86)
35 PF13975 gag-asp_proteas: gag- 86.4 1.2 2.7E-05 29.2 3.7 29 102-145 13-41 (72)
36 cd06094 RP_Saci_like RP_Saci_l 86.2 8 0.00017 26.6 7.6 78 123-231 9-87 (89)
37 COG3577 Predicted aspartyl pro 81.6 3.3 7.1E-05 33.1 4.7 36 92-145 103-138 (215)
38 PF12384 Peptidase_A2B: Ty3 tr 76.1 11 0.00024 29.1 6.0 20 126-145 48-67 (177)
39 cd05481 retropepsin_like_LTR_1 75.7 3.4 7.4E-05 28.6 3.0 21 126-146 13-33 (93)
40 PF02160 Peptidase_A3: Caulifl 75.2 5.1 0.00011 32.0 4.1 27 218-245 90-116 (201)
41 COG5550 Predicted aspartyl pro 75.1 2.5 5.3E-05 30.9 2.2 20 126-145 29-49 (125)
42 PF11925 DUF3443: Protein of u 74.2 56 0.0012 28.7 10.4 14 127-140 259-272 (370)
43 cd05483 retropepsin_like_bacte 71.4 3.6 7.8E-05 27.9 2.3 34 5-41 61-94 (96)
44 PF00077 RVP: Retroviral aspar 71.1 3.2 7E-05 28.7 2.0 26 101-141 9-34 (100)
45 PF09668 Asp_protease: Asparty 67.9 7.2 0.00016 28.7 3.3 29 102-145 29-57 (124)
46 KOG0012 DNA damage inducible p 55.5 78 0.0017 27.7 7.7 40 208-247 306-346 (380)
47 cd00303 retropepsin_like Retro 31.1 40 0.00086 21.1 2.0 20 126-145 12-31 (92)
48 PF05585 DUF1758: Putative pep 27.8 33 0.00071 26.2 1.2 21 125-145 14-34 (164)
49 cd06098 phytepsin Phytepsin, a 26.5 82 0.0018 26.8 3.6 15 126-140 26-40 (317)
50 TIGR03778 VPDSG_CTERM VPDSG-CT 26.3 12 0.00025 19.4 -1.0 11 129-139 3-13 (26)
51 PRK09784 hypothetical protein; 26.0 1.1E+02 0.0025 25.2 4.0 25 123-147 374-399 (417)
No 1
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=8.9e-50 Score=340.16 Aligned_cols=244 Identities=53% Similarity=0.881 Sum_probs=203.8
Q ss_pred CceEEEEEEeCCc-cccceEEeeeecCCCCcCCcceeeecCCCCCccccccc---CCeeeEeeeCCCCCCcceeeeCCCC
Q 037264 1 GDFVTETVTLGSA-SVDNIAIGCGHNNEGLFVGAAGLLGLGGGSLSFPSQIN---ASTFSYCLVDRDSDSTSTLEFDSSL 76 (249)
Q Consensus 1 G~~~~D~v~ig~~-~~~~~~Fg~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~---~~~Fs~~l~~~~~~~~G~l~~Gg~d 76 (249)
|.+++|+|+|++. +++++.|||++.+++.+...+||||||++.+|++.|+. +++||+||.+......|+|+||++|
T Consensus 48 G~~~~D~v~ig~~~~~~~~~Fg~~~~~~~~~~~~~GilGLg~~~~s~~~ql~~~~~~~FS~~L~~~~~~~~G~l~fGg~d 127 (299)
T cd05472 48 GDLATDTLTLGSSDVVPGFAFGCGHDNEGLFGGAAGLLGLGRGKLSLPSQTASSYGGVFSYCLPDRSSSSSGYLSFGAAA 127 (299)
T ss_pred EEEEEEEEEeCCCCccCCEEEECCccCCCccCCCCEEEECCCCcchHHHHhhHhhcCceEEEccCCCCCCCceEEeCCcc
Confidence 6899999999998 89999999999988877678999999999999999876 6899999987432458999999999
Q ss_pred CC--CCeeeccccCCCCCcceEeeeceEEECCeeeccCccceeeccCCCCceEEcccCceeeeCHHHHHHHHHHHHHhhc
Q 037264 77 PP--NAVTAPLLRNHELDTFYYLGLTGISVGGDLLPISETAFKIDESGNGGIIVDSGTAVTRLQTETYNALRDAFVRGTR 154 (249)
Q Consensus 77 ~~--~~~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~i~~~~~ 154 (249)
+. ++.|+|++.++....+|.|++++|+|+++.+..++.. .....+|||||||+++||+++|++|.+++.+...
T Consensus 128 ~~~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~-----~~~~~~ivDSGTt~~~lp~~~~~~l~~~l~~~~~ 202 (299)
T cd05472 128 SVPAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPAS-----FGAGGVIIDSGTVITRLPPSAYAALRDAFRAAMA 202 (299)
T ss_pred ccCCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccc-----cCCCCeEEeCCCcceecCHHHHHHHHHHHHHHhc
Confidence 84 9999999987544578999999999999988654321 1245789999999999999999999999987654
Q ss_pred cCCCCCcccccccccccccCCcccCCeEEEEeCCCcEEEeCCCceEEEecCCCcEEEEEEcCC--CCceeeehhhccccE
Q 037264 155 ALSPTDGVALFDTCYDFSSRSSVEVPTVSFHFPEGKVLPLPAKNYLIPVDSNGTFCFAFAPTS--SSLSIIGNVQQQGTR 232 (249)
Q Consensus 155 ~~~~~~~~~~~~~C~~~~~~~~~~~p~i~~~f~~g~~~~i~~~~y~~~~~~~~~~C~~~~~~~--~~~~ilG~~fl~~~y 232 (249)
..++......++.|+..++.....+|+|+|+|.++++++|+|++|+++....+..|+++...+ .+.||||+.|||++|
T Consensus 203 ~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~~g~~~~l~~~~y~~~~~~~~~~C~~~~~~~~~~~~~ilG~~fl~~~~ 282 (299)
T cd05472 203 AYPRAPGFSILDTCYDLSGFRSVSVPTVSLHFQGGADVELDASGVLYPVDDSSQVCLAFAGTSDDGGLSIIGNVQQQTFR 282 (299)
T ss_pred cCCCCCCCCCCCccCcCCCCcCCccCCEEEEECCCCEEEeCcccEEEEecCCCCEEEEEeCCCCCCCCEEEchHHccceE
Confidence 333323333454698765555568999999996589999999999995444568899877653 467999999999999
Q ss_pred EEEeCCCCEEEEeeCCC
Q 037264 233 VSFNLRNSLIGFTPNKC 249 (249)
Q Consensus 233 ~vfD~~~~riGfa~~~C 249 (249)
+|||++++|||||+++|
T Consensus 283 vvfD~~~~~igfa~~~C 299 (299)
T cd05472 283 VVYDVAGGRIGFAPGGC 299 (299)
T ss_pred EEEECCCCEEeEecCCC
Confidence 99999999999999999
No 2
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=3.7e-47 Score=330.74 Aligned_cols=245 Identities=27% Similarity=0.482 Sum_probs=200.5
Q ss_pred CceEEEEEEeCC--------ccccceEEeeeecCC--CCcCCcceeeecCCCCCccccccc-----CCeeeEeeeCCCCC
Q 037264 1 GDFVTETVTLGS--------ASVDNIAIGCGHNNE--GLFVGAAGLLGLGGGSLSFPSQIN-----ASTFSYCLVDRDSD 65 (249)
Q Consensus 1 G~~~~D~v~ig~--------~~~~~~~Fg~~~~~~--~~~~~~~GIlGLg~~~~s~~~ql~-----~~~Fs~~l~~~~~~ 65 (249)
|.+++|+|+|+. .+++++.|||++++. +.+..+|||||||++++|+++|+. +++||+||.+.. .
T Consensus 83 G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~~~~~dGIlGLg~~~lSl~sql~~~~~~~~~FS~CL~~~~-~ 161 (362)
T cd05489 83 GDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGLPPGAQGVAGLGRSPLSLPAQLASAFGVARKFALCLPSSP-G 161 (362)
T ss_pred EEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCCccccccccccCCCccchHHHhhhhcCCCcceEEEeCCCC-C
Confidence 789999999973 268899999999864 344468999999999999999987 389999998753 3
Q ss_pred CcceeeeCCCCC----------CCCeeeccccCCCCCcceEeeeceEEECCeeeccCccceeeccCCCCceEEcccCcee
Q 037264 66 STSTLEFDSSLP----------PNAVTAPLLRNHELDTFYYLGLTGISVGGDLLPISETAFKIDESGNGGIIVDSGTAVT 135 (249)
Q Consensus 66 ~~G~l~~Gg~d~----------~~~~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~ 135 (249)
..|+|+||+.++ ..+.|+|++.++..+.+|.|+|++|+||++.+.+++..+....++.+++||||||+++
T Consensus 162 ~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~~~~~~g~iiDSGTs~t 241 (362)
T cd05489 162 GPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSANDRLGPGGVKLSTVVPYT 241 (362)
T ss_pred CCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchhccccccCCCcEEEecCCceE
Confidence 489999999984 3789999998754457999999999999999987766655544566789999999999
Q ss_pred eeCHHHHHHHHHHHHHhhccCCCCCccc-ccccccccccC----CcccCCeEEEEeCC-CcEEEeCCCceEEEecCCCcE
Q 037264 136 RLQTETYNALRDAFVRGTRALSPTDGVA-LFDTCYDFSSR----SSVEVPTVSFHFPE-GKVLPLPAKNYLIPVDSNGTF 209 (249)
Q Consensus 136 ~lp~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~C~~~~~~----~~~~~p~i~~~f~~-g~~~~i~~~~y~~~~~~~~~~ 209 (249)
+||+++|++|.+++.++........... ..+.||..... ....+|+|+|+|.+ |++|+|+|++|+++.. ++.+
T Consensus 242 ~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~it~~f~g~g~~~~l~~~ny~~~~~-~~~~ 320 (362)
T cd05489 242 VLRSDIYRAFTQAFAKATARIPRVPAAAVFPELCYPASALGNTRLGYAVPAIDLVLDGGGVNWTIFGANSMVQVK-GGVA 320 (362)
T ss_pred EECHHHHHHHHHHHHHHhcccCcCCCCCCCcCccccCCCcCCcccccccceEEEEEeCCCeEEEEcCCceEEEcC-CCcE
Confidence 9999999999999987765433222211 13689975321 13679999999965 6999999999999876 5678
Q ss_pred EEEEEcCC---CCceeeehhhccccEEEEeCCCCEEEEeeC
Q 037264 210 CFAFAPTS---SSLSIIGNVQQQGTRVSFNLRNSLIGFTPN 247 (249)
Q Consensus 210 C~~~~~~~---~~~~ilG~~fl~~~y~vfD~~~~riGfa~~ 247 (249)
|++|...+ .+.||||+.|||++|++||++++|||||+.
T Consensus 321 Cl~f~~~~~~~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~ 361 (362)
T cd05489 321 CLAFVDGGSEPRPAVVIGGHQMEDNLLVFDLEKSRLGFSSS 361 (362)
T ss_pred EEEEeeCCCCCCceEEEeeheecceEEEEECCCCEeecccC
Confidence 99988654 357999999999999999999999999975
No 3
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=5.1e-45 Score=323.83 Aligned_cols=241 Identities=38% Similarity=0.698 Sum_probs=197.9
Q ss_pred CceEEEEEEeCC-----ccccceEEeeeecCCCCcC-CcceeeecCCCCCccccccc---CCeeeEeeeCCCC--CCcce
Q 037264 1 GDFVTETVTLGS-----ASVDNIAIGCGHNNEGLFV-GAAGLLGLGGGSLSFPSQIN---ASTFSYCLVDRDS--DSTST 69 (249)
Q Consensus 1 G~~~~D~v~ig~-----~~~~~~~Fg~~~~~~~~~~-~~~GIlGLg~~~~s~~~ql~---~~~Fs~~l~~~~~--~~~G~ 69 (249)
|.+++|+|+|++ .+++++.|||++.+.+.|. ..+||||||+..+|+++|+. .++||+||.+..+ ...|+
T Consensus 174 G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~f~~~~~GilGLG~~~~Sl~sql~~~~~~~FSycL~~~~~~~~~~g~ 253 (431)
T PLN03146 174 GNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGTFDEKGSGIVGLGGGPLSLISQLGSSIGGKFSYCLVPLSSDSNGTSK 253 (431)
T ss_pred eEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCCccCCCceeEecCCCCccHHHHhhHhhCCcEEEECCCCCCCCCCcce
Confidence 789999999997 3588999999999888775 48999999999999999986 4689999975322 34799
Q ss_pred eeeCCCCCC---CCeeeccccCCCCCcceEeeeceEEECCeeeccCccceeeccCCCCceEEcccCceeeeCHHHHHHHH
Q 037264 70 LEFDSSLPP---NAVTAPLLRNHELDTFYYLGLTGISVGGDLLPISETAFKIDESGNGGIIVDSGTAVTRLQTETYNALR 146 (249)
Q Consensus 70 l~~Gg~d~~---~~~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~ 146 (249)
|+||+...- .+.|+|++.+.. +.+|.|.|++|+||++.+.++...+. ..+.+++||||||++++||+++|++|.
T Consensus 254 l~fG~~~~~~~~~~~~tPl~~~~~-~~~y~V~L~gIsVgg~~l~~~~~~~~--~~~~g~~iiDSGTt~t~Lp~~~y~~l~ 330 (431)
T PLN03146 254 INFGTNAIVSGSGVVSTPLVSKDP-DTFYYLTLEAISVGSKKLPYTGSSKN--GVEEGNIIIDSGTTLTLLPSDFYSELE 330 (431)
T ss_pred EEeCCccccCCCCceEcccccCCC-CCeEEEeEEEEEECCEECcCCccccc--cCCCCcEEEeCCccceecCHHHHHHHH
Confidence 999996432 589999986422 47899999999999999887766554 234568999999999999999999999
Q ss_pred HHHHHhhccCCCCCcccccccccccccCCcccCCeEEEEeCCCcEEEeCCCceEEEecCCCcEEEEEEcCCCCceeeehh
Q 037264 147 DAFVRGTRALSPTDGVALFDTCYDFSSRSSVEVPTVSFHFPEGKVLPLPAKNYLIPVDSNGTFCFAFAPTSSSLSIIGNV 226 (249)
Q Consensus 147 ~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~~~f~~g~~~~i~~~~y~~~~~~~~~~C~~~~~~~~~~~ilG~~ 226 (249)
+++.+.+...........++.||.... ...+|+|+|+| +|+++.++|++|+++.. ++.+|+++... .+.||||+.
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~C~~~~~--~~~~P~i~~~F-~Ga~~~l~~~~~~~~~~-~~~~Cl~~~~~-~~~~IlG~~ 405 (431)
T PLN03146 331 SAVEEAIGGERVSDPQGLLSLCYSSTS--DIKLPIITAHF-TGADVKLQPLNTFVKVS-EDLVCFAMIPT-SSIAIFGNL 405 (431)
T ss_pred HHHHHHhccccCCCCCCCCCccccCCC--CCCCCeEEEEE-CCCeeecCcceeEEEcC-CCcEEEEEecC-CCceEECee
Confidence 999887753222222234568997432 25689999999 68999999999999876 56789998765 356999999
Q ss_pred hccccEEEEeCCCCEEEEeeCCC
Q 037264 227 QQQGTRVSFNLRNSLIGFTPNKC 249 (249)
Q Consensus 227 fl~~~y~vfD~~~~riGfa~~~C 249 (249)
|||++|+|||++++|||||+++|
T Consensus 406 ~q~~~~vvyDl~~~~igFa~~~C 428 (431)
T PLN03146 406 AQMNFLVGYDLESKTVSFKPTDC 428 (431)
T ss_pred eEeeEEEEEECCCCEEeeecCCc
Confidence 99999999999999999999999
No 4
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=4.7e-44 Score=299.95 Aligned_cols=211 Identities=46% Similarity=0.826 Sum_probs=180.6
Q ss_pred CceEEEEEEeCCc--cccceEEeeeecCCCCc-CCcceeeecCCCCCcccccccC--CeeeEeeeCCC-CCCcceeeeCC
Q 037264 1 GDFVTETVTLGSA--SVDNIAIGCGHNNEGLF-VGAAGLLGLGGGSLSFPSQINA--STFSYCLVDRD-SDSTSTLEFDS 74 (249)
Q Consensus 1 G~~~~D~v~ig~~--~~~~~~Fg~~~~~~~~~-~~~~GIlGLg~~~~s~~~ql~~--~~Fs~~l~~~~-~~~~G~l~~Gg 74 (249)
|.+++|+|+|++. +++++.|||++++.+.. ..++||||||+...|++.|+.. ++||+||.+.. ....|+|+||+
T Consensus 45 G~~~~D~v~~g~~~~~~~~~~Fg~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~~~Fs~~l~~~~~~~~~G~l~fGg 124 (265)
T cd05476 45 GVLATETFTFGDSSVSVPNVAFGCGTDNEGGSFGGADGILGLGRGPLSLVSQLGSTGNKFSYCLVPHDDTGGSSPLILGD 124 (265)
T ss_pred eeEEEEEEEecCCCCccCCEEEEecccccCCccCCCCEEEECCCCcccHHHHhhcccCeeEEEccCCCCCCCCCeEEECC
Confidence 7899999999998 89999999999987622 2489999999999999999884 49999998742 24589999999
Q ss_pred CCCC---CCeeeccccCCCCCcceEeeeceEEECCeeeccCccceeeccCCCCceEEcccCceeeeCHHHHHHHHHHHHH
Q 037264 75 SLPP---NAVTAPLLRNHELDTFYYLGLTGISVGGDLLPISETAFKIDESGNGGIIVDSGTAVTRLQTETYNALRDAFVR 151 (249)
Q Consensus 75 ~d~~---~~~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~i~~ 151 (249)
+|++ ++.|+|++.++....+|.|++++|+|+++.+.+++..+.........+||||||++++||+++|
T Consensus 125 ~d~~~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGTs~~~lp~~~~--------- 195 (265)
T cd05476 125 AADLGGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLTYLPDPAY--------- 195 (265)
T ss_pred cccccCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCCcceEcCcccc---------
Confidence 9983 9999999986544579999999999999988765444333333456899999999999999887
Q ss_pred hhccCCCCCcccccccccccccCCcccCCeEEEEeCCCcEEEeCCCceEEEecCCCcEEEEEEcC-CCCceeeehhhccc
Q 037264 152 GTRALSPTDGVALFDTCYDFSSRSSVEVPTVSFHFPEGKVLPLPAKNYLIPVDSNGTFCFAFAPT-SSSLSIIGNVQQQG 230 (249)
Q Consensus 152 ~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~~~f~~g~~~~i~~~~y~~~~~~~~~~C~~~~~~-~~~~~ilG~~fl~~ 230 (249)
|+|+|+|.++.++.+++++|+.+.. ++.+|+++... ..+.||||++|||+
T Consensus 196 ----------------------------P~i~~~f~~~~~~~i~~~~y~~~~~-~~~~C~~~~~~~~~~~~ilG~~fl~~ 246 (265)
T cd05476 196 ----------------------------PDLTLHFDGGADLELPPENYFVDVG-EGVVCLAILSSSSGGVSILGNIQQQN 246 (265)
T ss_pred ----------------------------CCEEEEECCCCEEEeCcccEEEECC-CCCEEEEEecCCCCCcEEEChhhccc
Confidence 8999999558999999999999655 66799998765 46789999999999
Q ss_pred cEEEEeCCCCEEEEeeCCC
Q 037264 231 TRVSFNLRNSLIGFTPNKC 249 (249)
Q Consensus 231 ~y~vfD~~~~riGfa~~~C 249 (249)
+|++||++++|||||+++|
T Consensus 247 ~~~vFD~~~~~iGfa~~~C 265 (265)
T cd05476 247 FLVEYDLENSRLGFAPADC 265 (265)
T ss_pred EEEEEECCCCEEeeecCCC
Confidence 9999999999999999999
No 5
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=5.1e-41 Score=289.39 Aligned_cols=222 Identities=25% Similarity=0.437 Sum_probs=176.6
Q ss_pred CceEEEEEEeCCccccceEEeeeecCCCC-cC--CcceeeecCCCCCcccc------cc------cCCeeeEeeeCCCC-
Q 037264 1 GDFVTETVTLGSASVDNIAIGCGHNNEGL-FV--GAAGLLGLGGGSLSFPS------QI------NASTFSYCLVDRDS- 64 (249)
Q Consensus 1 G~~~~D~v~ig~~~~~~~~Fg~~~~~~~~-~~--~~~GIlGLg~~~~s~~~------ql------~~~~Fs~~l~~~~~- 64 (249)
|.+++|+|+||+.+++++.|||++++.+. +. ..+||||||++..+... +| .+++||+||.+...
T Consensus 77 G~~~~D~v~~g~~~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~FS~~L~~~~~~ 156 (325)
T cd05490 77 GYLSQDTVSIGGLQVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPVFDNIMAQKLVEQNVFSFYLNRDPDA 156 (325)
T ss_pred EEEeeeEEEECCEEEcCEEEEEEeeccCCcccceeeeEEEecCCccccccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCC
Confidence 67899999999999999999999987653 32 47999999998766433 22 27999999986422
Q ss_pred CCcceeeeCCCCCC----CCeeeccccCCCCCcceEeeeceEEECCeeeccCccceeeccCCCCceEEcccCceeeeCHH
Q 037264 65 DSTSTLEFDSSLPP----NAVTAPLLRNHELDTFYYLGLTGISVGGDLLPISETAFKIDESGNGGIIVDSGTAVTRLQTE 140 (249)
Q Consensus 65 ~~~G~l~~Gg~d~~----~~~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~ 140 (249)
..+|+|+||++|++ ++.|+|+... .+|.|++++|+|+++..... ....+||||||+++++|++
T Consensus 157 ~~~G~l~~Gg~d~~~~~g~l~~~~~~~~----~~w~v~l~~i~vg~~~~~~~---------~~~~aiiDSGTt~~~~p~~ 223 (325)
T cd05490 157 QPGGELMLGGTDPKYYTGDLHYVNVTRK----AYWQIHMDQVDVGSGLTLCK---------GGCEAIVDTGTSLITGPVE 223 (325)
T ss_pred CCCCEEEECccCHHHcCCceEEEEcCcc----eEEEEEeeEEEECCeeeecC---------CCCEEEECCCCccccCCHH
Confidence 24799999999985 8999999754 79999999999987643211 1346899999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCCcccccccccccccCCcccCCeEEEEeCCCcEEEeCCCceEEEecC-CCcEEEE-EEcC--
Q 037264 141 TYNALRDAFVRGTRALSPTDGVALFDTCYDFSSRSSVEVPTVSFHFPEGKVLPLPAKNYLIPVDS-NGTFCFA-FAPT-- 216 (249)
Q Consensus 141 ~~~~l~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~~~f~~g~~~~i~~~~y~~~~~~-~~~~C~~-~~~~-- 216 (249)
++++|.+++.+. +...+.+ ..+|+.. ..+|+|+|+| +|+.++|+|++|+++... +...|++ ++..
T Consensus 224 ~~~~l~~~~~~~----~~~~~~~-~~~C~~~-----~~~P~i~f~f-gg~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~ 292 (325)
T cd05490 224 EVRALQKAIGAV----PLIQGEY-MIDCEKI-----PTLPVISFSL-GGKVYPLTGEDYILKVSQRGTTICLSGFMGLDI 292 (325)
T ss_pred HHHHHHHHhCCc----cccCCCE-Eeccccc-----ccCCCEEEEE-CCEEEEEChHHeEEeccCCCCCEEeeEEEECCC
Confidence 999999988432 1222233 3378764 5689999999 899999999999997653 3468986 6542
Q ss_pred ---CCCceeeehhhccccEEEEeCCCCEEEEee
Q 037264 217 ---SSSLSIIGNVQQQGTRVSFNLRNSLIGFTP 246 (249)
Q Consensus 217 ---~~~~~ilG~~fl~~~y~vfD~~~~riGfa~ 246 (249)
....||||++|||++|+|||++++|||||+
T Consensus 293 ~~~~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 293 PPPAGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred CCCCCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 235799999999999999999999999996
No 6
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=4e-41 Score=289.14 Aligned_cols=218 Identities=22% Similarity=0.397 Sum_probs=177.0
Q ss_pred CceEEEEEEeCCccccceEEeeeecCCCCcC---CcceeeecCCCCCc------ccccc------cCCeeeEeeeCCCCC
Q 037264 1 GDFVTETVTLGSASVDNIAIGCGHNNEGLFV---GAAGLLGLGGGSLS------FPSQI------NASTFSYCLVDRDSD 65 (249)
Q Consensus 1 G~~~~D~v~ig~~~~~~~~Fg~~~~~~~~~~---~~~GIlGLg~~~~s------~~~ql------~~~~Fs~~l~~~~~~ 65 (249)
|.+++|+|+||+.+++++.|||++.+.+.+. ..+||||||++..+ +..|| .+++||+||.+.. .
T Consensus 79 G~~~~D~v~ig~~~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~-~ 157 (317)
T cd05478 79 GILGYDTVQVGGISDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATPVFDNMMSQGLVSQDLFSVYLSSNG-Q 157 (317)
T ss_pred EEEeeeEEEECCEEECCEEEEEEEecCccccccccccceeeeccchhcccCCCCHHHHHHhCCCCCCCEEEEEeCCCC-C
Confidence 6789999999999999999999998776432 47999999987654 33343 2799999998753 3
Q ss_pred CcceeeeCCCCCC----CCeeeccccCCCCCcceEeeeceEEECCeeeccCccceeeccCCCCceEEcccCceeeeCHHH
Q 037264 66 STSTLEFDSSLPP----NAVTAPLLRNHELDTFYYLGLTGISVGGDLLPISETAFKIDESGNGGIIVDSGTAVTRLQTET 141 (249)
Q Consensus 66 ~~G~l~~Gg~d~~----~~~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~ 141 (249)
..|+|+|||+|++ ++.|+|+... .+|.|.+++|+|+++.+.... +..+||||||+++++|+++
T Consensus 158 ~~g~l~~Gg~d~~~~~g~l~~~p~~~~----~~w~v~l~~v~v~g~~~~~~~---------~~~~iiDTGts~~~lp~~~ 224 (317)
T cd05478 158 QGSVVTFGGIDPSYYTGSLNWVPVTAE----TYWQITVDSVTINGQVVACSG---------GCQAIVDTGTSLLVGPSSD 224 (317)
T ss_pred CCeEEEEcccCHHHccCceEEEECCCC----cEEEEEeeEEEECCEEEccCC---------CCEEEECCCchhhhCCHHH
Confidence 4799999999975 8999999753 799999999999999875321 3467999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCCcccccccccccccCCcccCCeEEEEeCCCcEEEeCCCceEEEecCCCcEEEE-EEcCC-CC
Q 037264 142 YNALRDAFVRGTRALSPTDGVALFDTCYDFSSRSSVEVPTVSFHFPEGKVLPLPAKNYLIPVDSNGTFCFA-FAPTS-SS 219 (249)
Q Consensus 142 ~~~l~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~~~f~~g~~~~i~~~~y~~~~~~~~~~C~~-~~~~~-~~ 219 (249)
|++|.+++..... ..+...+ +|+.. .++|.|+|+| +|+.++|+|++|+.+. ...|++ +...+ ..
T Consensus 225 ~~~l~~~~~~~~~----~~~~~~~-~C~~~-----~~~P~~~f~f-~g~~~~i~~~~y~~~~---~~~C~~~~~~~~~~~ 290 (317)
T cd05478 225 IANIQSDIGASQN----QNGEMVV-NCSSI-----SSMPDVVFTI-NGVQYPLPPSAYILQD---QGSCTSGFQSMGLGE 290 (317)
T ss_pred HHHHHHHhCCccc----cCCcEEe-CCcCc-----ccCCcEEEEE-CCEEEEECHHHheecC---CCEEeEEEEeCCCCC
Confidence 9999998844321 1122223 78764 5689999999 8999999999999864 468986 66544 36
Q ss_pred ceeeehhhccccEEEEeCCCCEEEEee
Q 037264 220 LSIIGNVQQQGTRVSFNLRNSLIGFTP 246 (249)
Q Consensus 220 ~~ilG~~fl~~~y~vfD~~~~riGfa~ 246 (249)
.||||++|||++|+|||++|+|||||+
T Consensus 291 ~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 291 LWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred eEEechHHhcceEEEEeCCCCEEeecC
Confidence 799999999999999999999999996
No 7
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=1e-40 Score=283.83 Aligned_cols=225 Identities=24% Similarity=0.437 Sum_probs=182.5
Q ss_pred CceEEEEEEeCCccccceEEeeeecCCCCcCCcceeeecCCCCC-----------ccccccc------CCeeeEeeeCCC
Q 037264 1 GDFVTETVTLGSASVDNIAIGCGHNNEGLFVGAAGLLGLGGGSL-----------SFPSQIN------ASTFSYCLVDRD 63 (249)
Q Consensus 1 G~~~~D~v~ig~~~~~~~~Fg~~~~~~~~~~~~~GIlGLg~~~~-----------s~~~ql~------~~~Fs~~l~~~~ 63 (249)
|.+++|+|+|++.+++++.|||+++.. ..+||||||+.+. +++.||. +++||+||.+..
T Consensus 44 G~~~~D~v~~g~~~~~~~~fg~~~~~~----~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~~~g~i~~~~Fsl~l~~~~ 119 (295)
T cd05474 44 GTWGTDTVSIGGATVKNLQFAVANSTS----SDVGVLGIGLPGNEATYGTGYTYPNFPIALKKQGLIKKNAYSLYLNDLD 119 (295)
T ss_pred EEEEEEEEEECCeEecceEEEEEecCC----CCcceeeECCCCCcccccCCCcCCCHHHHHHHCCcccceEEEEEeCCCC
Confidence 689999999999999999999999853 4789999999876 4555553 689999998753
Q ss_pred CCCcceeeeCCCCCC----CCeeeccccCCC--CCcceEeeeceEEECCeeeccCccceeeccCCCCceEEcccCceeee
Q 037264 64 SDSTSTLEFDSSLPP----NAVTAPLLRNHE--LDTFYYLGLTGISVGGDLLPISETAFKIDESGNGGIIVDSGTAVTRL 137 (249)
Q Consensus 64 ~~~~G~l~~Gg~d~~----~~~~~p~~~~~~--~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~l 137 (249)
..+|.|+||++|+. ++.|+|+..++. ...+|.|.+++|+++++.+..+.. .....++|||||++++|
T Consensus 120 -~~~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~------~~~~~~iiDSGt~~~~l 192 (295)
T cd05474 120 -ASTGSILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLL------SKNLPALLDSGTTLTYL 192 (295)
T ss_pred -CCceeEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCccccc------CCCccEEECCCCccEeC
Confidence 35799999999975 799999987642 236899999999999988753211 23567899999999999
Q ss_pred CHHHHHHHHHHHHHhhccCCCCCcccccccccccccCCcccCCeEEEEeCCCcEEEeCCCceEEEecC---CCcEEE-EE
Q 037264 138 QTETYNALRDAFVRGTRALSPTDGVALFDTCYDFSSRSSVEVPTVSFHFPEGKVLPLPAKNYLIPVDS---NGTFCF-AF 213 (249)
Q Consensus 138 p~~~~~~l~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~~~f~~g~~~~i~~~~y~~~~~~---~~~~C~-~~ 213 (249)
|.+++++|.+++.+.... ..... ..+|+.. .. |+|+|+| +|++++|++++|+++... .+..|+ ++
T Consensus 193 P~~~~~~l~~~~~~~~~~---~~~~~-~~~C~~~-----~~-p~i~f~f-~g~~~~i~~~~~~~~~~~~~~~~~~C~~~i 261 (295)
T cd05474 193 PSDIVDAIAKQLGATYDS---DEGLY-VVDCDAK-----DD-GSLTFNF-GGATISVPLSDLVLPASTDDGGDGACYLGI 261 (295)
T ss_pred CHHHHHHHHHHhCCEEcC---CCcEE-EEeCCCC-----CC-CEEEEEE-CCeEEEEEHHHhEeccccCCCCCCCeEEEE
Confidence 999999999999655321 12223 3488875 34 9999999 789999999999987642 356785 58
Q ss_pred EcCCCCceeeehhhccccEEEEeCCCCEEEEeeC
Q 037264 214 APTSSSLSIIGNVQQQGTRVSFNLRNSLIGFTPN 247 (249)
Q Consensus 214 ~~~~~~~~ilG~~fl~~~y~vfD~~~~riGfa~~ 247 (249)
.+.+.+.||||++|||++|++||.+++|||||++
T Consensus 262 ~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 262 QPSTSDYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred EeCCCCcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 7765578999999999999999999999999986
No 8
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=1.3e-40 Score=285.87 Aligned_cols=221 Identities=25% Similarity=0.378 Sum_probs=175.9
Q ss_pred CceEEEEEEeCCccccceEEeeeecCCCC-cC--CcceeeecCCCCCccc----------cc--ccCCeeeEeeeCCC-C
Q 037264 1 GDFVTETVTLGSASVDNIAIGCGHNNEGL-FV--GAAGLLGLGGGSLSFP----------SQ--INASTFSYCLVDRD-S 64 (249)
Q Consensus 1 G~~~~D~v~ig~~~~~~~~Fg~~~~~~~~-~~--~~~GIlGLg~~~~s~~----------~q--l~~~~Fs~~l~~~~-~ 64 (249)
|.+++|+|+|++.+++++.|||+..+.+. |. ..+||||||++..+.. +| +..++||+||.+.. .
T Consensus 69 G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~L~~~~~~ 148 (316)
T cd05486 69 GIIGIDQVTVEGITVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLVELPMFSVYMSRNPNS 148 (316)
T ss_pred EEeeecEEEECCEEEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHHhcCCCCCCEEEEEEccCCCC
Confidence 67899999999999999999999887652 32 5799999999876531 12 33789999998642 2
Q ss_pred CCcceeeeCCCCCC----CCeeeccccCCCCCcceEeeeceEEECCeeeccCccceeeccCCCCceEEcccCceeeeCHH
Q 037264 65 DSTSTLEFDSSLPP----NAVTAPLLRNHELDTFYYLGLTGISVGGDLLPISETAFKIDESGNGGIIVDSGTAVTRLQTE 140 (249)
Q Consensus 65 ~~~G~l~~Gg~d~~----~~~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~ 140 (249)
...|+|+|||+|++ ++.|+|+... .+|.|.+++|+|+++.+.... ...+||||||+++++|++
T Consensus 149 ~~~g~l~fGg~d~~~~~g~l~~~pi~~~----~~w~v~l~~i~v~g~~~~~~~---------~~~aiiDTGTs~~~lP~~ 215 (316)
T cd05486 149 ADGGELVFGGFDTSRFSGQLNWVPVTVQ----GYWQIQLDNIQVGGTVIFCSD---------GCQAIVDTGTSLITGPSG 215 (316)
T ss_pred CCCcEEEEcccCHHHcccceEEEECCCc----eEEEEEeeEEEEecceEecCC---------CCEEEECCCcchhhcCHH
Confidence 34799999999986 8999999754 799999999999998764321 346799999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCCcccccccccccccCCcccCCeEEEEeCCCcEEEeCCCceEEEecC-CCcEEEE-EEcCC-
Q 037264 141 TYNALRDAFVRGTRALSPTDGVALFDTCYDFSSRSSVEVPTVSFHFPEGKVLPLPAKNYLIPVDS-NGTFCFA-FAPTS- 217 (249)
Q Consensus 141 ~~~~l~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~~~f~~g~~~~i~~~~y~~~~~~-~~~~C~~-~~~~~- 217 (249)
++++|.+++.+.. ..+.+.+ +|+.. ..+|+|+|+| +|+.++|+|++|++.... ++..|++ +...+
T Consensus 216 ~~~~l~~~~~~~~-----~~~~~~~-~C~~~-----~~~p~i~f~f-~g~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~ 283 (316)
T cd05486 216 DIKQLQNYIGATA-----TDGEYGV-DCSTL-----SLMPSVTFTI-NGIPYSLSPQAYTLEDQSDGGGYCSSGFQGLDI 283 (316)
T ss_pred HHHHHHHHhCCcc-----cCCcEEE-ecccc-----ccCCCEEEEE-CCEEEEeCHHHeEEecccCCCCEEeeEEEECCC
Confidence 9999988774321 1222223 78754 5689999999 899999999999987532 3568975 65432
Q ss_pred ----CCceeeehhhccccEEEEeCCCCEEEEee
Q 037264 218 ----SSLSIIGNVQQQGTRVSFNLRNSLIGFTP 246 (249)
Q Consensus 218 ----~~~~ilG~~fl~~~y~vfD~~~~riGfa~ 246 (249)
.+.||||+.|||++|+|||.+++|||||+
T Consensus 284 ~~~~~~~~ILGd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 284 PPPAGPLWILGDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred CCCCCCeEEEchHHhcceEEEEeCCCCEeeccC
Confidence 35799999999999999999999999996
No 9
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=1.5e-40 Score=285.86 Aligned_cols=217 Identities=21% Similarity=0.407 Sum_probs=175.5
Q ss_pred CceEEEEEEeCCccccceEEeeeecCCCC-c--CCcceeeecCCCCCccccc------------ccCCeeeEeeeCCCCC
Q 037264 1 GDFVTETVTLGSASVDNIAIGCGHNNEGL-F--VGAAGLLGLGGGSLSFPSQ------------INASTFSYCLVDRDSD 65 (249)
Q Consensus 1 G~~~~D~v~ig~~~~~~~~Fg~~~~~~~~-~--~~~~GIlGLg~~~~s~~~q------------l~~~~Fs~~l~~~~~~ 65 (249)
|.+++|+|+|++..++++.|||++.+.+. + ...+||||||++..+...+ +.+++||+||.+.. .
T Consensus 79 G~~~~D~v~ig~~~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~-~ 157 (320)
T cd05488 79 GFVSQDTLSIGDLTIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVPPFYNMINQGLLDEPVFSFYLGSSE-E 157 (320)
T ss_pred EEEEEeEEEECCEEECCEEEEEEecCCCcceeeeeeceEEecCCccccccCCCCHHHHHHhcCCCCCCEEEEEecCCC-C
Confidence 67899999999999999999999987764 2 2479999999988765432 23789999998753 3
Q ss_pred CcceeeeCCCCCC----CCeeeccccCCCCCcceEeeeceEEECCeeeccCccceeeccCCCCceEEcccCceeeeCHHH
Q 037264 66 STSTLEFDSSLPP----NAVTAPLLRNHELDTFYYLGLTGISVGGDLLPISETAFKIDESGNGGIIVDSGTAVTRLQTET 141 (249)
Q Consensus 66 ~~G~l~~Gg~d~~----~~~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~ 141 (249)
.+|+|+||++|+. ++.|+|+... .+|.|++++|+|+++.+... ...++|||||++++||+++
T Consensus 158 ~~G~l~fGg~d~~~~~g~l~~~p~~~~----~~w~v~l~~i~vg~~~~~~~----------~~~~ivDSGtt~~~lp~~~ 223 (320)
T cd05488 158 DGGEATFGGIDESRFTGKITWLPVRRK----AYWEVELEKIGLGDEELELE----------NTGAAIDTGTSLIALPSDL 223 (320)
T ss_pred CCcEEEECCcCHHHcCCceEEEeCCcC----cEEEEEeCeEEECCEEeccC----------CCeEEEcCCcccccCCHHH
Confidence 5799999999985 8999999754 79999999999999877543 2357999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCCcccccccccccccCCcccCCeEEEEeCCCcEEEeCCCceEEEecCCCcEEEE-EEcCC---
Q 037264 142 YNALRDAFVRGTRALSPTDGVALFDTCYDFSSRSSVEVPTVSFHFPEGKVLPLPAKNYLIPVDSNGTFCFA-FAPTS--- 217 (249)
Q Consensus 142 ~~~l~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~~~f~~g~~~~i~~~~y~~~~~~~~~~C~~-~~~~~--- 217 (249)
+++|.+++.+... ..+.+.+ +|+.. ..+|.|+|+| +|++++|+|++|+++. +..|++ +....
T Consensus 224 ~~~l~~~~~~~~~----~~~~~~~-~C~~~-----~~~P~i~f~f-~g~~~~i~~~~y~~~~---~g~C~~~~~~~~~~~ 289 (320)
T cd05488 224 AEMLNAEIGAKKS----WNGQYTV-DCSKV-----DSLPDLTFNF-DGYNFTLGPFDYTLEV---SGSCISAFTGMDFPE 289 (320)
T ss_pred HHHHHHHhCCccc----cCCcEEe-ecccc-----ccCCCEEEEE-CCEEEEECHHHheecC---CCeEEEEEEECcCCC
Confidence 9999988843211 1222233 67764 5689999999 7899999999999853 347987 54321
Q ss_pred --CCceeeehhhccccEEEEeCCCCEEEEee
Q 037264 218 --SSLSIIGNVQQQGTRVSFNLRNSLIGFTP 246 (249)
Q Consensus 218 --~~~~ilG~~fl~~~y~vfD~~~~riGfa~ 246 (249)
.+.||||+.|||++|+|||.+++|||||+
T Consensus 290 ~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 290 PVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred CCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 34799999999999999999999999996
No 10
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=2.3e-40 Score=284.54 Aligned_cols=221 Identities=24% Similarity=0.432 Sum_probs=177.0
Q ss_pred CceEEEEEEeCCccccceEEeeeecCCCC-c--CCcceeeecCCCCCc------cccccc------CCeeeEeeeCCCCC
Q 037264 1 GDFVTETVTLGSASVDNIAIGCGHNNEGL-F--VGAAGLLGLGGGSLS------FPSQIN------ASTFSYCLVDRDSD 65 (249)
Q Consensus 1 G~~~~D~v~ig~~~~~~~~Fg~~~~~~~~-~--~~~~GIlGLg~~~~s------~~~ql~------~~~Fs~~l~~~~~~ 65 (249)
|.+++|+|+||+.+++++.|||++...+. + ...+||||||++..+ ++.||. +++||+||.+....
T Consensus 72 G~~~~D~i~~g~~~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~~~ 151 (318)
T cd05477 72 GIFGYDTVTVQGIIITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQQNLLQAPIFSFYLSGQQGQ 151 (318)
T ss_pred EEEEeeEEEECCEEEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCHHHHHHhcCCcCCCEEEEEEcCCCCC
Confidence 67899999999999999999999987653 2 247999999987543 333442 79999999875434
Q ss_pred CcceeeeCCCCCC----CCeeeccccCCCCCcceEeeeceEEECCeeeccCccceeeccCCCCceEEcccCceeeeCHHH
Q 037264 66 STSTLEFDSSLPP----NAVTAPLLRNHELDTFYYLGLTGISVGGDLLPISETAFKIDESGNGGIIVDSGTAVTRLQTET 141 (249)
Q Consensus 66 ~~G~l~~Gg~d~~----~~~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~ 141 (249)
.+|+|+||++|++ ++.|+|+... .+|.|++++|+|+++.+..... ...+||||||+++++|+++
T Consensus 152 ~~g~l~fGg~d~~~~~g~l~~~pv~~~----~~w~v~l~~i~v~g~~~~~~~~--------~~~~iiDSGtt~~~lP~~~ 219 (318)
T cd05477 152 QGGELVFGGVDNNLYTGQIYWTPVTSE----TYWQIGIQGFQINGQATGWCSQ--------GCQAIVDTGTSLLTAPQQV 219 (318)
T ss_pred CCCEEEEcccCHHHcCCceEEEecCCc----eEEEEEeeEEEECCEEecccCC--------CceeeECCCCccEECCHHH
Confidence 5799999999986 7999999754 7999999999999988753321 3467999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCCcccccccccccccCCcccCCeEEEEeCCCcEEEeCCCceEEEecCCCcEEE-EEEcC----
Q 037264 142 YNALRDAFVRGTRALSPTDGVALFDTCYDFSSRSSVEVPTVSFHFPEGKVLPLPAKNYLIPVDSNGTFCF-AFAPT---- 216 (249)
Q Consensus 142 ~~~l~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~~~f~~g~~~~i~~~~y~~~~~~~~~~C~-~~~~~---- 216 (249)
+++|++++.+... ..+.+. .+|+.. ..+|.|+|+| +|++++++|++|+... +..|+ ++.+.
T Consensus 220 ~~~l~~~~~~~~~----~~~~~~-~~C~~~-----~~~p~l~~~f-~g~~~~v~~~~y~~~~---~~~C~~~i~~~~~~~ 285 (318)
T cd05477 220 MSTLMQSIGAQQD----QYGQYV-VNCNNI-----QNLPTLTFTI-NGVSFPLPPSAYILQN---NGYCTVGIEPTYLPS 285 (318)
T ss_pred HHHHHHHhCCccc----cCCCEE-EeCCcc-----ccCCcEEEEE-CCEEEEECHHHeEecC---CCeEEEEEEecccCC
Confidence 9999998854421 122222 367764 5689999999 7899999999999864 35786 57542
Q ss_pred --CCCceeeehhhccccEEEEeCCCCEEEEeeC
Q 037264 217 --SSSLSIIGNVQQQGTRVSFNLRNSLIGFTPN 247 (249)
Q Consensus 217 --~~~~~ilG~~fl~~~y~vfD~~~~riGfa~~ 247 (249)
+...||||+.|||++|+|||++++|||||++
T Consensus 286 ~~~~~~~ilG~~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 286 QNGQPLWILGDVFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred CCCCceEEEcHHHhhheEEEEeCCCCEEeeeeC
Confidence 1246999999999999999999999999986
No 11
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=2.1e-40 Score=296.25 Aligned_cols=217 Identities=19% Similarity=0.364 Sum_probs=176.6
Q ss_pred CceEEEEEEeCCccccceEEeeeecCCC-CcC--CcceeeecCCCCCccc---------cc------ccCCeeeEeeeCC
Q 037264 1 GDFVTETVTLGSASVDNIAIGCGHNNEG-LFV--GAAGLLGLGGGSLSFP---------SQ------INASTFSYCLVDR 62 (249)
Q Consensus 1 G~~~~D~v~ig~~~~~~~~Fg~~~~~~~-~~~--~~~GIlGLg~~~~s~~---------~q------l~~~~Fs~~l~~~ 62 (249)
|.+++|+|+||+.+++++.|||++.+++ .|. .+|||||||++.++.. .+ +.+++||+||.+.
T Consensus 194 G~l~~DtV~ig~l~i~~q~FG~a~~~s~~~f~~~~~DGILGLg~~~~s~~s~~~~~p~~~~l~~qgli~~~~FS~yL~~~ 273 (482)
T PTZ00165 194 LALGKDTVKIGGLKVKHQSIGLAIEESLHPFADLPFDGLVGLGFPDKDFKESKKALPIVDNIKKQNLLKRNIFSFYMSKD 273 (482)
T ss_pred EEEEEEEEEECCEEEccEEEEEEEeccccccccccccceeecCCCcccccccCCCCCHHHHHHHcCCcccceEEEEeccC
Confidence 5789999999999999999999998765 343 4799999999876322 12 2379999999764
Q ss_pred CCCCcceeeeCCCCCC------CCeeeccccCCCCCcceEeeeceEEECCeeeccCccceeeccCCCCceEEcccCceee
Q 037264 63 DSDSTSTLEFDSSLPP------NAVTAPLLRNHELDTFYYLGLTGISVGGDLLPISETAFKIDESGNGGIIVDSGTAVTR 136 (249)
Q Consensus 63 ~~~~~G~l~~Gg~d~~------~~~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~ 136 (249)
. ..+|+|+|||+|+. ++.|+|+... .+|+|.+++|+|+++.+..+.. ...+|+||||++++
T Consensus 274 ~-~~~G~l~fGGiD~~~~~~~g~i~~~Pv~~~----~yW~i~l~~i~vgg~~~~~~~~--------~~~aIiDTGTSli~ 340 (482)
T PTZ00165 274 L-NQPGSISFGSADPKYTLEGHKIWWFPVIST----DYWEIEVVDILIDGKSLGFCDR--------KCKAAIDTGSSLIT 340 (482)
T ss_pred C-CCCCEEEeCCcCHHHcCCCCceEEEEcccc----ceEEEEeCeEEECCEEeeecCC--------ceEEEEcCCCccEe
Confidence 3 34799999999974 6899999765 7999999999999988765421 34679999999999
Q ss_pred eCHHHHHHHHHHHHHhhccCCCCCcccccccccccccCCcccCCeEEEEeCCCc-----EEEeCCCceEEEe---cCCCc
Q 037264 137 LQTETYNALRDAFVRGTRALSPTDGVALFDTCYDFSSRSSVEVPTVSFHFPEGK-----VLPLPAKNYLIPV---DSNGT 208 (249)
Q Consensus 137 lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~~~f~~g~-----~~~i~~~~y~~~~---~~~~~ 208 (249)
+|++++++|.+++... .+|+.. ..+|+|+|+| +|. +++++|++|+.+. ...+.
T Consensus 341 lP~~~~~~i~~~i~~~-------------~~C~~~-----~~lP~itf~f-~g~~g~~v~~~l~p~dYi~~~~~~~~~~~ 401 (482)
T PTZ00165 341 GPSSVINPLLEKIPLE-------------EDCSNK-----DSLPRISFVL-EDVNGRKIKFDMDPEDYVIEEGDSEEQEH 401 (482)
T ss_pred CCHHHHHHHHHHcCCc-------------cccccc-----ccCCceEEEE-CCCCCceEEEEEchHHeeeecccCCCCCC
Confidence 9999999999887321 278865 5689999999 543 8999999999974 22456
Q ss_pred EEEE-EEcCC-----CCceeeehhhccccEEEEeCCCCEEEEeeCCC
Q 037264 209 FCFA-FAPTS-----SSLSIIGNVQQQGTRVSFNLRNSLIGFTPNKC 249 (249)
Q Consensus 209 ~C~~-~~~~~-----~~~~ilG~~fl~~~y~vfD~~~~riGfa~~~C 249 (249)
.|+. +...+ ++.||||++|||++|+|||.+|+|||||+++|
T Consensus 402 ~C~~g~~~~d~~~~~g~~~ILGd~Flr~yy~VFD~~n~rIGfA~a~~ 448 (482)
T PTZ00165 402 QCVIGIIPMDVPAPRGPLFVLGNNFIRKYYSIFDRDHMMVGLVPAKH 448 (482)
T ss_pred eEEEEEEECCCCCCCCceEEEchhhheeEEEEEeCCCCEEEEEeecc
Confidence 8965 76532 35799999999999999999999999999987
No 12
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-39 Score=286.75 Aligned_cols=240 Identities=43% Similarity=0.730 Sum_probs=195.3
Q ss_pred CceEEEEEEeCC---ccccceEEeeeecCCCC-c--CCcceeeecCCCCCccccccc-----CCeeeEeeeCCCCC--Cc
Q 037264 1 GDFVTETVTLGS---ASVDNIAIGCGHNNEGL-F--VGAAGLLGLGGGSLSFPSQIN-----ASTFSYCLVDRDSD--ST 67 (249)
Q Consensus 1 G~~~~D~v~ig~---~~~~~~~Fg~~~~~~~~-~--~~~~GIlGLg~~~~s~~~ql~-----~~~Fs~~l~~~~~~--~~ 67 (249)
|.+++|+|+|++ ..++++.|||+..+.+. . ...+||||||+.++|+++|+. .++||+||.+.+.. .+
T Consensus 135 G~l~~Dtv~~~~~~~~~~~~~~FGc~~~~~g~~~~~~~~dGIlGLg~~~~S~~~q~~~~~~~~~~FS~cL~~~~~~~~~~ 214 (398)
T KOG1339|consen 135 GYLATDTVTFGGTTSLPVPNQTFGCGTNNPGSFGLFAAFDGILGLGRGSLSVPSQLPSFYNAINVFSYCLSSNGSPSSGG 214 (398)
T ss_pred EEEEEEEEEEccccccccccEEEEeeecCccccccccccceEeecCCCCccceeecccccCCceeEEEEeCCCCCCCCCC
Confidence 789999999998 78888999999999763 2 347999999999999999987 44699999887543 48
Q ss_pred ceeeeCCCCCC----CCeeeccccCCCCCcceEeeeceEEECCeeeccCccceeeccCCCCceEEcccCceeeeCHHHHH
Q 037264 68 STLEFDSSLPP----NAVTAPLLRNHELDTFYYLGLTGISVGGDLLPISETAFKIDESGNGGIIVDSGTAVTRLQTETYN 143 (249)
Q Consensus 68 G~l~~Gg~d~~----~~~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~ 143 (249)
|.|+||++|+. .+.|+|++.++. .+|.|.+++|+|+++. .+....+..+ .+++|+||||++++||+++|+
T Consensus 215 G~i~fG~~d~~~~~~~l~~tPl~~~~~--~~y~v~l~~I~vgg~~-~~~~~~~~~~---~~~~iiDSGTs~t~lp~~~y~ 288 (398)
T KOG1339|consen 215 GSIIFGGVDSSHYTGSLTYTPLLSNPS--TYYQVNLDGISVGGKR-PIGSSLFCTD---GGGAIIDSGTSLTYLPTSAYN 288 (398)
T ss_pred cEEEECCCcccCcCCceEEEeeccCCC--ccEEEEEeEEEECCcc-CCCcceEecC---CCCEEEECCcceeeccHHHHH
Confidence 99999999997 689999998853 4999999999999987 5555554432 578999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCcccccccccccccCCcccCCeEEEEeCCCcEEEeCCCceEEEecCCCcEEEEEEcCC-C-Cce
Q 037264 144 ALRDAFVRGTRALSPTDGVALFDTCYDFSSRSSVEVPTVSFHFPEGKVLPLPAKNYLIPVDSNGTFCFAFAPTS-S-SLS 221 (249)
Q Consensus 144 ~l~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~~~f~~g~~~~i~~~~y~~~~~~~~~~C~~~~~~~-~-~~~ 221 (249)
+|.+++.+... .. ......+..|+...... ..+|.|+|+|.+|+.|.+++++|+++.......|+++.... . ..|
T Consensus 289 ~i~~~~~~~~~-~~-~~~~~~~~~C~~~~~~~-~~~P~i~~~f~~g~~~~l~~~~y~~~~~~~~~~Cl~~~~~~~~~~~~ 365 (398)
T KOG1339|consen 289 ALREAIGAEVS-VV-GTDGEYFVPCFSISTSG-VKLPDITFHFGGGAVFSLPPKNYLVEVSDGGGVCLAFFNGMDSGPLW 365 (398)
T ss_pred HHHHHHHhhee-cc-ccCCceeeecccCCCCc-ccCCcEEEEECCCcEEEeCccceEEEECCCCCceeeEEecCCCCceE
Confidence 99999977530 01 11122345999874322 34999999995589999999999999874333399966543 3 489
Q ss_pred eeehhhccccEEEEeCC-CCEEEEee--CCC
Q 037264 222 IIGNVQQQGTRVSFNLR-NSLIGFTP--NKC 249 (249)
Q Consensus 222 ilG~~fl~~~y~vfD~~-~~riGfa~--~~C 249 (249)
|||+.|||+++++||.. ++|||||+ ..|
T Consensus 366 ilG~~~~~~~~~~~D~~~~~riGfa~~~~~c 396 (398)
T KOG1339|consen 366 ILGDVFQQNYLVVFDLGENSRVGFAPALTNC 396 (398)
T ss_pred EEchHHhCCEEEEEeCCCCCEEEeccccccC
Confidence 99999999999999999 99999999 777
No 13
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=1.2e-39 Score=279.89 Aligned_cols=211 Identities=25% Similarity=0.446 Sum_probs=170.0
Q ss_pred CceEEEEEEeCCccccceEEeeeecCCCC-c--CCcceeeecCCCCCcccc----------c--ccCCeeeEeeeCCCC-
Q 037264 1 GDFVTETVTLGSASVDNIAIGCGHNNEGL-F--VGAAGLLGLGGGSLSFPS----------Q--INASTFSYCLVDRDS- 64 (249)
Q Consensus 1 G~~~~D~v~ig~~~~~~~~Fg~~~~~~~~-~--~~~~GIlGLg~~~~s~~~----------q--l~~~~Fs~~l~~~~~- 64 (249)
|.+++|+|+||+.+++++.||+++.+.+. + ...+||||||++..+... | +.+++||+||.+...
T Consensus 80 G~~~~D~v~ig~~~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~ 159 (317)
T cd06098 80 GFFSQDSVTVGDLVVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVEQGLVKEPVFSFWLNRNPDE 159 (317)
T ss_pred EEEEeeEEEECCEEECCEEEEEEEecCCccccccccceeccccccchhhcCCCCHHHHHHhcCCCCCCEEEEEEecCCCC
Confidence 67899999999999999999999987552 2 247999999998765422 2 337899999986422
Q ss_pred CCcceeeeCCCCCC----CCeeeccccCCCCCcceEeeeceEEECCeeeccCccceeeccCCCCceEEcccCceeeeCHH
Q 037264 65 DSTSTLEFDSSLPP----NAVTAPLLRNHELDTFYYLGLTGISVGGDLLPISETAFKIDESGNGGIIVDSGTAVTRLQTE 140 (249)
Q Consensus 65 ~~~G~l~~Gg~d~~----~~~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~ 140 (249)
...|+|+||++|++ ++.|+|+... .+|.|++++|+|+++.+..+.. ...+||||||+++++|++
T Consensus 160 ~~~G~l~fGg~d~~~~~g~l~~~pv~~~----~~w~v~l~~i~v~g~~~~~~~~--------~~~aivDTGTs~~~lP~~ 227 (317)
T cd06098 160 EEGGELVFGGVDPKHFKGEHTYVPVTRK----GYWQFEMGDVLIGGKSTGFCAG--------GCAAIADSGTSLLAGPTT 227 (317)
T ss_pred CCCcEEEECccChhhcccceEEEecCcC----cEEEEEeCeEEECCEEeeecCC--------CcEEEEecCCcceeCCHH
Confidence 34799999999986 8999999754 7999999999999988754321 346799999999999998
Q ss_pred HHHHHHHHHHHhhccCCCCCcccccccccccccCCcccCCeEEEEeCCCcEEEeCCCceEEEecC-CCcEEEE-EEcCC-
Q 037264 141 TYNALRDAFVRGTRALSPTDGVALFDTCYDFSSRSSVEVPTVSFHFPEGKVLPLPAKNYLIPVDS-NGTFCFA-FAPTS- 217 (249)
Q Consensus 141 ~~~~l~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~~~f~~g~~~~i~~~~y~~~~~~-~~~~C~~-~~~~~- 217 (249)
+++++. ..+ +|+.. ..+|+|+|+| +|+.++|+|++|+++... ....|++ +...+
T Consensus 228 ~~~~i~----------------~~~-~C~~~-----~~~P~i~f~f-~g~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~ 284 (317)
T cd06098 228 IVTQIN----------------SAV-DCNSL-----SSMPNVSFTI-GGKTFELTPEQYILKVGEGAAAQCISGFTALDV 284 (317)
T ss_pred HHHhhh----------------ccC-Ccccc-----ccCCcEEEEE-CCEEEEEChHHeEEeecCCCCCEEeceEEECCC
Confidence 776553 112 78865 5689999999 889999999999987653 2458976 65321
Q ss_pred ----CCceeeehhhccccEEEEeCCCCEEEEee
Q 037264 218 ----SSLSIIGNVQQQGTRVSFNLRNSLIGFTP 246 (249)
Q Consensus 218 ----~~~~ilG~~fl~~~y~vfD~~~~riGfa~ 246 (249)
++.||||++|||++|+|||++|+|||||+
T Consensus 285 ~~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 285 PPPRGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred CCCCCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 35799999999999999999999999995
No 14
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=1.5e-39 Score=273.79 Aligned_cols=198 Identities=28% Similarity=0.555 Sum_probs=164.1
Q ss_pred CceEEEEEEeCC----ccccceEEeeeecCCCCc----CCcceeeecCCCCCccccccc-----CCeeeEeeeCCCCCCc
Q 037264 1 GDFVTETVTLGS----ASVDNIAIGCGHNNEGLF----VGAAGLLGLGGGSLSFPSQIN-----ASTFSYCLVDRDSDST 67 (249)
Q Consensus 1 G~~~~D~v~ig~----~~~~~~~Fg~~~~~~~~~----~~~~GIlGLg~~~~s~~~ql~-----~~~Fs~~l~~~~~~~~ 67 (249)
|.+++|+|+|+. ..++++.|||+..+.+.+ ...+||||||+.+.+++.||. +++||+||.+. .+
T Consensus 54 G~~~~D~v~~~~~~~~~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~~~~~i~~~Fs~~l~~~---~~ 130 (273)
T cd05475 54 GVLVTDIFSLKLTNGSRAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLPSQLASQGIIKNVIGHCLSSN---GG 130 (273)
T ss_pred EEEEEEEEEEeecCCCcccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCCHHHHHHhcCCcCceEEEEccCC---CC
Confidence 689999999963 577899999998876532 247899999999999999876 47899999762 47
Q ss_pred ceeeeCCCCCC--CCeeeccccCCCCCcceEeeeceEEECCeeeccCccceeeccCCCCceEEcccCceeeeCHHHHHHH
Q 037264 68 STLEFDSSLPP--NAVTAPLLRNHELDTFYYLGLTGISVGGDLLPISETAFKIDESGNGGIIVDSGTAVTRLQTETYNAL 145 (249)
Q Consensus 68 G~l~~Gg~d~~--~~~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l 145 (249)
|.|+||+.... ++.|+|+..++. ..+|.|++.+|+|+++.+.. ....+||||||++++||+++|
T Consensus 131 g~l~~G~~~~~~g~i~ytpl~~~~~-~~~y~v~l~~i~vg~~~~~~----------~~~~~ivDTGTt~t~lp~~~y--- 196 (273)
T cd05475 131 GFLFFGDDLVPSSGVTWTPMRRESQ-KKHYSPGPASLLFNGQPTGG----------KGLEVVFDSGSSYTYFNAQAY--- 196 (273)
T ss_pred eEEEECCCCCCCCCeeecccccCCC-CCeEEEeEeEEEECCEECcC----------CCceEEEECCCceEEcCCccc---
Confidence 99999965432 799999987642 36899999999999985421 245689999999999999876
Q ss_pred HHHHHHhhccCCCCCcccccccccccccCCcccCCeEEEEeCCC---cEEEeCCCceEEEecCCCcEEEEEEcCC----C
Q 037264 146 RDAFVRGTRALSPTDGVALFDTCYDFSSRSSVEVPTVSFHFPEG---KVLPLPAKNYLIPVDSNGTFCFAFAPTS----S 218 (249)
Q Consensus 146 ~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~~~f~~g---~~~~i~~~~y~~~~~~~~~~C~~~~~~~----~ 218 (249)
+|+|+|+|.++ ++++|+|++|+.... .+..|+++.... .
T Consensus 197 ---------------------------------~p~i~~~f~~~~~~~~~~l~~~~y~~~~~-~~~~Cl~~~~~~~~~~~ 242 (273)
T cd05475 197 ---------------------------------FKPLTLKFGKGWRTRLLEIPPENYLIISE-KGNVCLGILNGSEIGLG 242 (273)
T ss_pred ---------------------------------cccEEEEECCCCceeEEEeCCCceEEEcC-CCCEEEEEecCCCcCCC
Confidence 48999999543 799999999998765 567899976432 2
Q ss_pred CceeeehhhccccEEEEeCCCCEEEEeeCCC
Q 037264 219 SLSIIGNVQQQGTRVSFNLRNSLIGFTPNKC 249 (249)
Q Consensus 219 ~~~ilG~~fl~~~y~vfD~~~~riGfa~~~C 249 (249)
+.||||+.|||++|+|||++++|||||+++|
T Consensus 243 ~~~ilG~~~l~~~~~vfD~~~~riGfa~~~C 273 (273)
T cd05475 243 NTNIIGDISMQGLMVIYDNEKQQIGWVRSDC 273 (273)
T ss_pred ceEEECceEEEeeEEEEECcCCEeCcccCCC
Confidence 5799999999999999999999999999999
No 15
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=1.9e-39 Score=279.64 Aligned_cols=221 Identities=23% Similarity=0.354 Sum_probs=175.5
Q ss_pred CceEEEEEEeCCccccceEEeeeecCCC-Cc--CCcceeeecCCCCCc----------cccc--ccCCeeeEeeeCCCC-
Q 037264 1 GDFVTETVTLGSASVDNIAIGCGHNNEG-LF--VGAAGLLGLGGGSLS----------FPSQ--INASTFSYCLVDRDS- 64 (249)
Q Consensus 1 G~~~~D~v~ig~~~~~~~~Fg~~~~~~~-~~--~~~~GIlGLg~~~~s----------~~~q--l~~~~Fs~~l~~~~~- 64 (249)
|.+++|+|++++..+. +.||+++...+ .+ ...+||||||+++.+ +.+| +.+++||+||.+...
T Consensus 79 G~~~~D~v~~g~~~~~-~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FS~~L~~~~~~ 157 (326)
T cd05487 79 GFLSQDIVTVGGIPVT-QMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTPVFDNIMSQGVLKEDVFSVYYSRDSSH 157 (326)
T ss_pred EEEeeeEEEECCEEee-EEEEEEEeccCCccceeecceEEecCChhhcccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCC
Confidence 6789999999998875 78999988643 22 357999999998665 2333 348899999987532
Q ss_pred CCcceeeeCCCCCC----CCeeeccccCCCCCcceEeeeceEEECCeeeccCccceeeccCCCCceEEcccCceeeeCHH
Q 037264 65 DSTSTLEFDSSLPP----NAVTAPLLRNHELDTFYYLGLTGISVGGDLLPISETAFKIDESGNGGIIVDSGTAVTRLQTE 140 (249)
Q Consensus 65 ~~~G~l~~Gg~d~~----~~~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~ 140 (249)
...|+|+||++|++ ++.|+|+... .+|+|++++++|+++.+.... ...+||||||+++++|++
T Consensus 158 ~~~G~l~fGg~d~~~y~g~l~~~~~~~~----~~w~v~l~~i~vg~~~~~~~~---------~~~aiiDSGts~~~lP~~ 224 (326)
T cd05487 158 SLGGEIVLGGSDPQHYQGDFHYINTSKT----GFWQIQMKGVSVGSSTLLCED---------GCTAVVDTGASFISGPTS 224 (326)
T ss_pred CCCcEEEECCcChhhccCceEEEECCcC----ceEEEEecEEEECCEEEecCC---------CCEEEECCCccchhCcHH
Confidence 34799999999986 7999998654 789999999999998764321 346799999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCCcccccccccccccCCcccCCeEEEEeCCCcEEEeCCCceEEEecC-CCcEEEE-EEcCC-
Q 037264 141 TYNALRDAFVRGTRALSPTDGVALFDTCYDFSSRSSVEVPTVSFHFPEGKVLPLPAKNYLIPVDS-NGTFCFA-FAPTS- 217 (249)
Q Consensus 141 ~~~~l~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~~~f~~g~~~~i~~~~y~~~~~~-~~~~C~~-~~~~~- 217 (249)
+++++++++.+... ...+ ..+|+.. ..+|+|+|+| ++..++|++++|+++... .+..|+. +...+
T Consensus 225 ~~~~l~~~~~~~~~-----~~~y-~~~C~~~-----~~~P~i~f~f-gg~~~~v~~~~yi~~~~~~~~~~C~~~~~~~~~ 292 (326)
T cd05487 225 SISKLMEALGAKER-----LGDY-VVKCNEV-----PTLPDISFHL-GGKEYTLSSSDYVLQDSDFSDKLCTVAFHAMDI 292 (326)
T ss_pred HHHHHHHHhCCccc-----CCCE-EEecccc-----CCCCCEEEEE-CCEEEEeCHHHhEEeccCCCCCEEEEEEEeCCC
Confidence 99999998843321 1222 3378764 5689999999 899999999999998653 3567975 66421
Q ss_pred ----CCceeeehhhccccEEEEeCCCCEEEEeeC
Q 037264 218 ----SSLSIIGNVQQQGTRVSFNLRNSLIGFTPN 247 (249)
Q Consensus 218 ----~~~~ilG~~fl~~~y~vfD~~~~riGfa~~ 247 (249)
++.||||+.|||++|+|||++++|||||++
T Consensus 293 ~~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 293 PPPTGPLWVLGATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred CCCCCCeEEEehHHhhccEEEEeCCCCEEeeeeC
Confidence 357999999999999999999999999986
No 16
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=5.2e-39 Score=277.20 Aligned_cols=221 Identities=28% Similarity=0.462 Sum_probs=176.0
Q ss_pred CceEEEEEEeCCccccceEEeeeecCCCC-cC--CcceeeecCCCCCccc------ccc------cCCeeeEeeeCCCC-
Q 037264 1 GDFVTETVTLGSASVDNIAIGCGHNNEGL-FV--GAAGLLGLGGGSLSFP------SQI------NASTFSYCLVDRDS- 64 (249)
Q Consensus 1 G~~~~D~v~ig~~~~~~~~Fg~~~~~~~~-~~--~~~GIlGLg~~~~s~~------~ql------~~~~Fs~~l~~~~~- 64 (249)
|.+++|+|+|++.+++++.|||+.++.+. +. ..+||||||++..|.. .|| .+++||+||.+..+
T Consensus 82 G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~l~~~~~~ 161 (329)
T cd05485 82 GFLSTDTVSVGGVSVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGVVPVFYNMVNQKLVDAPVFSFYLNRDPSA 161 (329)
T ss_pred EEEecCcEEECCEEECCEEEEEEEecCCccccccccceEEEcCCccccccCCCCHHHHHHhCCCCCCCEEEEEecCCCCC
Confidence 67899999999999999999999887653 32 4799999999876642 122 27899999986432
Q ss_pred CCcceeeeCCCCCC----CCeeeccccCCCCCcceEeeeceEEECCeeeccCccceeeccCCCCceEEcccCceeeeCHH
Q 037264 65 DSTSTLEFDSSLPP----NAVTAPLLRNHELDTFYYLGLTGISVGGDLLPISETAFKIDESGNGGIIVDSGTAVTRLQTE 140 (249)
Q Consensus 65 ~~~G~l~~Gg~d~~----~~~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~ 140 (249)
...|+|+||++|++ ++.|+|+... .+|.|.+++++++++.+.. ....+||||||+++++|++
T Consensus 162 ~~~G~l~fGg~d~~~~~g~l~~~p~~~~----~~~~v~~~~i~v~~~~~~~----------~~~~~iiDSGtt~~~lP~~ 227 (329)
T cd05485 162 KEGGELILGGSDPKHYTGNFTYLPVTRK----GYWQFKMDSVSVGEGEFCS----------GGCQAIADTGTSLIAGPVD 227 (329)
T ss_pred CCCcEEEEcccCHHHcccceEEEEcCCc----eEEEEEeeEEEECCeeecC----------CCcEEEEccCCcceeCCHH
Confidence 24799999999975 8999999753 7999999999999986531 1346799999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCCcccccccccccccCCcccCCeEEEEeCCCcEEEeCCCceEEEecC-CCcEEEE-EEcC--
Q 037264 141 TYNALRDAFVRGTRALSPTDGVALFDTCYDFSSRSSVEVPTVSFHFPEGKVLPLPAKNYLIPVDS-NGTFCFA-FAPT-- 216 (249)
Q Consensus 141 ~~~~l~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~~~f~~g~~~~i~~~~y~~~~~~-~~~~C~~-~~~~-- 216 (249)
++++|.+++.... . ....+ ..+|+.. .++|+|+|+| +++.++|+|++|+++... +...|+. ++..
T Consensus 228 ~~~~l~~~~~~~~--~--~~~~~-~~~C~~~-----~~~p~i~f~f-gg~~~~i~~~~yi~~~~~~~~~~C~~~~~~~~~ 296 (329)
T cd05485 228 EIEKLNNAIGAKP--I--IGGEY-MVNCSAI-----PSLPDITFVL-GGKSFSLTGKDYVLKVTQMGQTICLSGFMGIDI 296 (329)
T ss_pred HHHHHHHHhCCcc--c--cCCcE-EEecccc-----ccCCcEEEEE-CCEEeEEChHHeEEEecCCCCCEEeeeEEECcC
Confidence 9999998884321 1 11222 2377764 5689999999 899999999999998653 3468986 6642
Q ss_pred ---CCCceeeehhhccccEEEEeCCCCEEEEee
Q 037264 217 ---SSSLSIIGNVQQQGTRVSFNLRNSLIGFTP 246 (249)
Q Consensus 217 ---~~~~~ilG~~fl~~~y~vfD~~~~riGfa~ 246 (249)
.++.||||+.|||++|+|||++++|||||+
T Consensus 297 ~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 297 PPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred CCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 135799999999999999999999999985
No 17
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=8.5e-39 Score=275.63 Aligned_cols=202 Identities=25% Similarity=0.418 Sum_probs=163.6
Q ss_pred CceEEEEEEeCCcccc-------ceEEeeeecCCCCcC--CcceeeecCCCCCccc--------cccc----CCeeeEee
Q 037264 1 GDFVTETVTLGSASVD-------NIAIGCGHNNEGLFV--GAAGLLGLGGGSLSFP--------SQIN----ASTFSYCL 59 (249)
Q Consensus 1 G~~~~D~v~ig~~~~~-------~~~Fg~~~~~~~~~~--~~~GIlGLg~~~~s~~--------~ql~----~~~Fs~~l 59 (249)
|.+++|+|+|++..++ ++.|||+..+.+.+. ..+||||||+.+.+.. .|.. .++||+||
T Consensus 89 G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~l~~~~~~~~~~~~FS~~l 168 (326)
T cd06096 89 GFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETNLFLTQQATGILGLSLTKNNGLPTPIILLFTKRPKLKKDKIFSICL 168 (326)
T ss_pred eEEEEEEEEeccCCCCccccccccEEeccCccccCcccccccceEEEccCCcccccCchhHHHHHhcccccCCceEEEEE
Confidence 6799999999986653 578999999887653 4799999999865321 1211 38999999
Q ss_pred eCCCCCCcceeeeCCCCCC--------------CCeeeccccCCCCCcceEeeeceEEECCeeeccCccceeeccCCCCc
Q 037264 60 VDRDSDSTSTLEFDSSLPP--------------NAVTAPLLRNHELDTFYYLGLTGISVGGDLLPISETAFKIDESGNGG 125 (249)
Q Consensus 60 ~~~~~~~~G~l~~Gg~d~~--------------~~~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ 125 (249)
.+ ..|+|+||++|++ ++.|+|+... .+|.|.+++|+|+++...... .....
T Consensus 169 ~~----~~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~~----~~y~v~l~~i~vg~~~~~~~~-------~~~~~ 233 (326)
T cd06096 169 SE----DGGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITRK----YYYYVKLEGLSVYGTTSNSGN-------TKGLG 233 (326)
T ss_pred cC----CCeEEEECccChhhhcccccccccccCCceEEeccCC----ceEEEEEEEEEEcccccceec-------ccCCC
Confidence 76 3699999999863 5789999765 689999999999988611110 12457
Q ss_pred eEEcccCceeeeCHHHHHHHHHHHHHhhccCCCCCcccccccccccccCCcccCCeEEEEeCCCcEEEeCCCceEEEecC
Q 037264 126 IIVDSGTAVTRLQTETYNALRDAFVRGTRALSPTDGVALFDTCYDFSSRSSVEVPTVSFHFPEGKVLPLPAKNYLIPVDS 205 (249)
Q Consensus 126 ~iiDSGTt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~~~f~~g~~~~i~~~~y~~~~~~ 205 (249)
+||||||++++||+++|++|.+++ |+|+|+|.+|++++++|++|++...
T Consensus 234 aivDSGTs~~~lp~~~~~~l~~~~------------------------------P~i~~~f~~g~~~~i~p~~y~~~~~- 282 (326)
T cd06096 234 MLVDSGSTLSHFPEDLYNKINNFF------------------------------PTITIIFENNLKIDWKPSSYLYKKE- 282 (326)
T ss_pred EEEeCCCCcccCCHHHHHHHHhhc------------------------------CcEEEEEcCCcEEEECHHHhccccC-
Confidence 899999999999999999988765 8999999558999999999999765
Q ss_pred CCcEEEEEEcCCCCceeeehhhccccEEEEeCCCCEEEEeeCCC
Q 037264 206 NGTFCFAFAPTSSSLSIIGNVQQQGTRVSFNLRNSLIGFTPNKC 249 (249)
Q Consensus 206 ~~~~C~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~riGfa~~~C 249 (249)
+..+|+.+... ++.+|||++|||++|+|||++++|||||+++|
T Consensus 283 ~~~c~~~~~~~-~~~~ILG~~flr~~y~vFD~~~~riGfa~~~C 325 (326)
T cd06096 283 SFWCKGGEKSV-SNKPILGASFFKNKQIIFDLDNNRIGFVESNC 325 (326)
T ss_pred CceEEEEEecC-CCceEEChHHhcCcEEEEECcCCEEeeEcCCC
Confidence 44455555543 46899999999999999999999999999999
No 18
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=1.2e-38 Score=278.50 Aligned_cols=240 Identities=23% Similarity=0.371 Sum_probs=174.5
Q ss_pred CceEEEEEEeCCccccc--eEEeeeecCCCCcC---CcceeeecCCCCCc------------cccccc-CCeeeEeeeCC
Q 037264 1 GDFVTETVTLGSASVDN--IAIGCGHNNEGLFV---GAAGLLGLGGGSLS------------FPSQIN-ASTFSYCLVDR 62 (249)
Q Consensus 1 G~~~~D~v~ig~~~~~~--~~Fg~~~~~~~~~~---~~~GIlGLg~~~~s------------~~~ql~-~~~Fs~~l~~~ 62 (249)
|.+++|+|+|++..... +.|++++++.+.+. ..+||||||++.++ +.+|.. .++||+||...
T Consensus 68 G~~~~D~v~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~q~~~~~~FS~~l~~~ 147 (364)
T cd05473 68 GELGTDLVSIPKGPNVTFRANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFFDSLVKQTGIPDVFSLQMCGA 147 (364)
T ss_pred EEEEEEEEEECCCCccceEEeeEEEeccccceecccccceeeeecccccccCCCCCCCHHHHHHhccCCccceEEEeccc
Confidence 68999999998642111 33567766665432 46999999998764 333433 56999988531
Q ss_pred --------CCCCcceeeeCCCCCC----CCeeeccccCCCCCcceEeeeceEEECCeeeccCccceeeccCCCCceEEcc
Q 037264 63 --------DSDSTSTLEFDSSLPP----NAVTAPLLRNHELDTFYYLGLTGISVGGDLLPISETAFKIDESGNGGIIVDS 130 (249)
Q Consensus 63 --------~~~~~G~l~~Gg~d~~----~~~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDS 130 (249)
.....|+|+||++|++ ++.|+|+... .+|.|.+++|+|+++.+..+...+. ...+||||
T Consensus 148 ~~~~~~~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~~~----~~~~v~l~~i~vg~~~~~~~~~~~~-----~~~~ivDS 218 (364)
T cd05473 148 GLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPIREE----WYYEVIILKLEVGGQSLNLDCKEYN-----YDKAIVDS 218 (364)
T ss_pred ccccccccccCCCcEEEeCCcCHhhcCCCceEEecCcc----eeEEEEEEEEEECCEeccccccccc-----CccEEEeC
Confidence 1124799999999986 8999999764 7899999999999998865433211 23589999
Q ss_pred cCceeeeCHHHHHHHHHHHHHhhccCCCCCcc--cccccccccccCCcccCCeEEEEeCCC-----cEEEeCCCceEEEe
Q 037264 131 GTAVTRLQTETYNALRDAFVRGTRALSPTDGV--ALFDTCYDFSSRSSVEVPTVSFHFPEG-----KVLPLPAKNYLIPV 203 (249)
Q Consensus 131 GTt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~--~~~~~C~~~~~~~~~~~p~i~~~f~~g-----~~~~i~~~~y~~~~ 203 (249)
||++++||+++|++|.+++.++.......... ....+|+.........+|+|+|+|.+. ..++|+|++|+...
T Consensus 219 GTs~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g~~~~~~~~l~l~p~~Y~~~~ 298 (364)
T cd05473 219 GTTNLRLPVKVFNAAVDAIKAASLIEDFPDGFWLGSQLACWQKGTTPWEIFPKISIYLRDENSSQSFRITILPQLYLRPV 298 (364)
T ss_pred CCcceeCCHHHHHHHHHHHHhhcccccCCccccCcceeecccccCchHhhCCcEEEEEccCCCCceEEEEECHHHhhhhh
Confidence 99999999999999999998764211000111 112378865322224699999999542 47899999999864
Q ss_pred cC--CCcEEEEEEc-CCCCceeeehhhccccEEEEeCCCCEEEEeeCCC
Q 037264 204 DS--NGTFCFAFAP-TSSSLSIIGNVQQQGTRVSFNLRNSLIGFTPNKC 249 (249)
Q Consensus 204 ~~--~~~~C~~~~~-~~~~~~ilG~~fl~~~y~vfD~~~~riGfa~~~C 249 (249)
.. .+..|+++.. ...+.||||+.|||++|+|||++++|||||+++|
T Consensus 299 ~~~~~~~~C~~~~~~~~~~~~ILG~~flr~~yvvfD~~~~rIGfa~~~C 347 (364)
T cd05473 299 EDHGTQLDCYKFAISQSTNGTVIGAVIMEGFYVVFDRANKRVGFAVSTC 347 (364)
T ss_pred ccCCCcceeeEEeeecCCCceEEeeeeEcceEEEEECCCCEEeeEeccc
Confidence 32 2467986432 2245799999999999999999999999999999
No 19
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=1.2e-37 Score=276.60 Aligned_cols=218 Identities=24% Similarity=0.393 Sum_probs=170.1
Q ss_pred CceEEEEEEeCCccccceEEeeeecCCCC---c--CCcceeeecCCCCCcccc------c------ccCCeeeEeeeCCC
Q 037264 1 GDFVTETVTLGSASVDNIAIGCGHNNEGL---F--VGAAGLLGLGGGSLSFPS------Q------INASTFSYCLVDRD 63 (249)
Q Consensus 1 G~~~~D~v~ig~~~~~~~~Fg~~~~~~~~---~--~~~~GIlGLg~~~~s~~~------q------l~~~~Fs~~l~~~~ 63 (249)
|.+++|+|+||+.+++ .+|+|+++..+. + ...|||||||++.+|... + +.+++||+||.+.+
T Consensus 208 G~~~~DtVtiG~~~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~ 286 (453)
T PTZ00147 208 GFFSKDLVTIGNLSVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIGSVDPYVVELKNQNKIEQAVFTFYLPPED 286 (453)
T ss_pred EEEEEEEEEECCEEEE-EEEEEEEeccCcccccccccccceecccCCccccccCCCHHHHHHHcCCCCccEEEEEecCCC
Confidence 6899999999999888 579998876552 1 247999999998765432 2 23789999997643
Q ss_pred CCCcceeeeCCCCCC----CCeeeccccCCCCCcceEeeeceEEECCeeeccCccceeeccCCCCceEEcccCceeeeCH
Q 037264 64 SDSTSTLEFDSSLPP----NAVTAPLLRNHELDTFYYLGLTGISVGGDLLPISETAFKIDESGNGGIIVDSGTAVTRLQT 139 (249)
Q Consensus 64 ~~~~G~l~~Gg~d~~----~~~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~ 139 (249)
...|+|+|||+|++ ++.|+|+... .+|.|.++ +.+++... ....+||||||+++++|+
T Consensus 287 -~~~G~L~fGGiD~~ky~G~l~y~pl~~~----~~W~V~l~-~~vg~~~~------------~~~~aIiDSGTsli~lP~ 348 (453)
T PTZ00147 287 -KHKGYLTIGGIEERFYEGPLTYEKLNHD----LYWQVDLD-VHFGNVSS------------EKANVIVDSGTSVITVPT 348 (453)
T ss_pred -CCCeEEEECCcChhhcCCceEEEEcCCC----ceEEEEEE-EEECCEec------------CceeEEECCCCchhcCCH
Confidence 35799999999986 9999999643 79999998 56765421 134679999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCcccccccccccccCCcccCCeEEEEeCCCcEEEeCCCceEEEecC-CCcEEEE-EEcCC
Q 037264 140 ETYNALRDAFVRGTRALSPTDGVALFDTCYDFSSRSSVEVPTVSFHFPEGKVLPLPAKNYLIPVDS-NGTFCFA-FAPTS 217 (249)
Q Consensus 140 ~~~~~l~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~~~f~~g~~~~i~~~~y~~~~~~-~~~~C~~-~~~~~ 217 (249)
++++++.+++.+.. .+. .+. ...+|+. ..+|+++|+| +|..++|+|++|+.+... ....|++ +++.+
T Consensus 349 ~~~~ai~~~l~~~~--~~~-~~~-y~~~C~~------~~lP~~~f~f-~g~~~~L~p~~yi~~~~~~~~~~C~~~i~~~~ 417 (453)
T PTZ00147 349 EFLNKFVESLDVFK--VPF-LPL-YVTTCNN------TKLPTLEFRS-PNKVYTLEPEYYLQPIEDIGSALCMLNIIPID 417 (453)
T ss_pred HHHHHHHHHhCCee--cCC-CCe-EEEeCCC------CCCCeEEEEE-CCEEEEECHHHheeccccCCCcEEEEEEEECC
Confidence 99999999884321 111 122 2347885 4579999999 789999999999986432 3467975 76643
Q ss_pred --CCceeeehhhccccEEEEeCCCCEEEEeeCC
Q 037264 218 --SSLSIIGNVQQQGTRVSFNLRNSLIGFTPNK 248 (249)
Q Consensus 218 --~~~~ilG~~fl~~~y~vfD~~~~riGfa~~~ 248 (249)
.+.||||++|||++|+|||.+++|||||+++
T Consensus 418 ~~~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 418 LEKNTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred CCCCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 3579999999999999999999999999875
No 20
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=2.5e-37 Score=274.11 Aligned_cols=218 Identities=22% Similarity=0.352 Sum_probs=168.4
Q ss_pred CceEEEEEEeCCccccceEEeeeecCCCC---cC--CcceeeecCCCCCccc------ccc------cCCeeeEeeeCCC
Q 037264 1 GDFVTETVTLGSASVDNIAIGCGHNNEGL---FV--GAAGLLGLGGGSLSFP------SQI------NASTFSYCLVDRD 63 (249)
Q Consensus 1 G~~~~D~v~ig~~~~~~~~Fg~~~~~~~~---~~--~~~GIlGLg~~~~s~~------~ql------~~~~Fs~~l~~~~ 63 (249)
|.+++|+|+||+.+++ .+|+++.+..+. +. ..|||||||++.++.. .|| .+++||+||.+.+
T Consensus 207 G~~~~Dtv~iG~~~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~ 285 (450)
T PTZ00013 207 GFFSKDLVTLGHLSMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYLPVHD 285 (450)
T ss_pred EEEEEEEEEECCEEEc-cEEEEEEeccccccceecccccceecccCCccccccCCCHHHHHHhccCcCCcEEEEEecCCC
Confidence 6799999999999887 579998876432 22 4799999999876532 232 3789999997643
Q ss_pred CCCcceeeeCCCCCC----CCeeeccccCCCCCcceEeeeceEEECCeeeccCccceeeccCCCCceEEcccCceeeeCH
Q 037264 64 SDSTSTLEFDSSLPP----NAVTAPLLRNHELDTFYYLGLTGISVGGDLLPISETAFKIDESGNGGIIVDSGTAVTRLQT 139 (249)
Q Consensus 64 ~~~~G~l~~Gg~d~~----~~~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~ 139 (249)
...|+|+|||+|++ ++.|+|+... .+|.|+++ +.++.... .+..+|+||||+++++|+
T Consensus 286 -~~~G~L~fGGiD~~~y~G~L~y~pv~~~----~yW~I~l~-v~~G~~~~------------~~~~aIlDSGTSli~lP~ 347 (450)
T PTZ00013 286 -VHAGYLTIGGIEEKFYEGNITYEKLNHD----LYWQIDLD-VHFGKQTM------------QKANVIVDSGTTTITAPS 347 (450)
T ss_pred -CCCCEEEECCcCccccccceEEEEcCcC----ceEEEEEE-EEECceec------------cccceEECCCCccccCCH
Confidence 34799999999986 8999999643 79999998 66654322 134579999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCcccccccccccccCCcccCCeEEEEeCCCcEEEeCCCceEEEec-CCCcEEEE-EEcCC
Q 037264 140 ETYNALRDAFVRGTRALSPTDGVALFDTCYDFSSRSSVEVPTVSFHFPEGKVLPLPAKNYLIPVD-SNGTFCFA-FAPTS 217 (249)
Q Consensus 140 ~~~~~l~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~~~f~~g~~~~i~~~~y~~~~~-~~~~~C~~-~~~~~ 217 (249)
++++++.+++.... .+ ..+. ...+|+. ..+|+|+|+| +|.+++|+|++|+.+.. .++..|+. +.+.+
T Consensus 348 ~~~~~i~~~l~~~~--~~-~~~~-y~~~C~~------~~lP~i~F~~-~g~~~~L~p~~Yi~~~~~~~~~~C~~~i~~~~ 416 (450)
T PTZ00013 348 EFLNKFFANLNVIK--VP-FLPF-YVTTCDN------KEMPTLEFKS-ANNTYTLEPEYYMNPLLDVDDTLCMITMLPVD 416 (450)
T ss_pred HHHHHHHHHhCCee--cC-CCCe-EEeecCC------CCCCeEEEEE-CCEEEEECHHHheehhccCCCCeeEEEEEECC
Confidence 99999998874321 11 1122 2347875 4679999999 78999999999997542 24568975 66543
Q ss_pred --CCceeeehhhccccEEEEeCCCCEEEEeeCC
Q 037264 218 --SSLSIIGNVQQQGTRVSFNLRNSLIGFTPNK 248 (249)
Q Consensus 218 --~~~~ilG~~fl~~~y~vfD~~~~riGfa~~~ 248 (249)
++.||||++|||++|+|||++++|||||+++
T Consensus 417 ~~~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 417 IDDNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred CCCCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 4579999999999999999999999999985
No 21
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=1e-35 Score=255.07 Aligned_cols=221 Identities=28% Similarity=0.510 Sum_probs=177.8
Q ss_pred CceEEEEEEeCCccccceEEeeeecCCCC---cCCcceeeecCCCCCc-------ccccc------cCCeeeEeeeCCCC
Q 037264 1 GDFVTETVTLGSASVDNIAIGCGHNNEGL---FVGAAGLLGLGGGSLS-------FPSQI------NASTFSYCLVDRDS 64 (249)
Q Consensus 1 G~~~~D~v~ig~~~~~~~~Fg~~~~~~~~---~~~~~GIlGLg~~~~s-------~~~ql------~~~~Fs~~l~~~~~ 64 (249)
|.+++|+|+|++..++++.||++....+. ....+||||||++..+ +..|| .+++||++|.+..
T Consensus 71 G~~~~D~v~ig~~~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g~i~~~~fsl~l~~~~- 149 (317)
T PF00026_consen 71 GNLVSDTVSIGGLTIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQGLISSNVFSLYLNPSD- 149 (317)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTTSSSSSEEEEEEESTT-
T ss_pred cccccceEeeeeccccccceeccccccccccccccccccccccCCcccccccCCcceecchhhccccccccceeeeecc-
Confidence 67899999999999999999999996543 2358999999975433 33333 3899999998865
Q ss_pred CCcceeeeCCCCCC----CCeeeccccCCCCCcceEeeeceEEECCeeeccCccceeeccCCCCceEEcccCceeeeCHH
Q 037264 65 DSTSTLEFDSSLPP----NAVTAPLLRNHELDTFYYLGLTGISVGGDLLPISETAFKIDESGNGGIIVDSGTAVTRLQTE 140 (249)
Q Consensus 65 ~~~G~l~~Gg~d~~----~~~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~ 140 (249)
...|.|+||++|++ ++.|+|+... .+|.+.+++|+++++...... ...++|||||++++||++
T Consensus 150 ~~~g~l~~Gg~d~~~~~g~~~~~~~~~~----~~w~v~~~~i~i~~~~~~~~~---------~~~~~~Dtgt~~i~lp~~ 216 (317)
T PF00026_consen 150 SQNGSLTFGGYDPSKYDGDLVWVPLVSS----GYWSVPLDSISIGGESVFSSS---------GQQAILDTGTSYIYLPRS 216 (317)
T ss_dssp SSEEEEEESSEEGGGEESEEEEEEBSST----TTTEEEEEEEEETTEEEEEEE---------EEEEEEETTBSSEEEEHH
T ss_pred cccchheeeccccccccCceeccCcccc----ccccccccccccccccccccc---------ceeeecccccccccccch
Confidence 45899999999987 7999999843 799999999999998332221 123699999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCCcccccccccccccCCcccCCeEEEEeCCCcEEEeCCCceEEEecCC-CcEEEE-EEc---
Q 037264 141 TYNALRDAFVRGTRALSPTDGVALFDTCYDFSSRSSVEVPTVSFHFPEGKVLPLPAKNYLIPVDSN-GTFCFA-FAP--- 215 (249)
Q Consensus 141 ~~~~l~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~~~f~~g~~~~i~~~~y~~~~~~~-~~~C~~-~~~--- 215 (249)
++++|++.+...... ... ..+|... ..+|.++|+| ++.+++|+|++|+.+.... ...|.. |..
T Consensus 217 ~~~~i~~~l~~~~~~-----~~~-~~~c~~~-----~~~p~l~f~~-~~~~~~i~~~~~~~~~~~~~~~~C~~~i~~~~~ 284 (317)
T PF00026_consen 217 IFDAIIKALGGSYSD-----GVY-SVPCNST-----DSLPDLTFTF-GGVTFTIPPSDYIFKIEDGNGGYCYLGIQPMDS 284 (317)
T ss_dssp HHHHHHHHHTTEEEC-----SEE-EEETTGG-----GGSEEEEEEE-TTEEEEEEHHHHEEEESSTTSSEEEESEEEESS
T ss_pred hhHHHHhhhcccccc-----eeE-EEecccc-----cccceEEEee-CCEEEEecchHhcccccccccceeEeeeecccc
Confidence 999999999655432 222 2377665 6789999999 7999999999999988743 348977 666
Q ss_pred -CCCCceeeehhhccccEEEEeCCCCEEEEeeC
Q 037264 216 -TSSSLSIIGNVQQQGTRVSFNLRNSLIGFTPN 247 (249)
Q Consensus 216 -~~~~~~ilG~~fl~~~y~vfD~~~~riGfa~~ 247 (249)
.....++||.+|||++|++||.|++|||||+|
T Consensus 285 ~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 285 SDDSDDWILGSPFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp TTSSSEEEEEHHHHTTEEEEEETTTTEEEEEEE
T ss_pred cccCCceEecHHHhhceEEEEeCCCCEEEEecC
Confidence 23578999999999999999999999999986
No 22
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=2.7e-35 Score=248.52 Aligned_cols=188 Identities=26% Similarity=0.340 Sum_probs=149.2
Q ss_pred CceEEEEEEeCCccccceEEeeeecCCCC-c--CCcceeeecCCCCCcccc---------ccc----CCeeeEeeeCCCC
Q 037264 1 GDFVTETVTLGSASVDNIAIGCGHNNEGL-F--VGAAGLLGLGGGSLSFPS---------QIN----ASTFSYCLVDRDS 64 (249)
Q Consensus 1 G~~~~D~v~ig~~~~~~~~Fg~~~~~~~~-~--~~~~GIlGLg~~~~s~~~---------ql~----~~~Fs~~l~~~~~ 64 (249)
|.+++|+|+||+.+++++.|||++...+. + ...+||||||++..+... ++. +++||+||.+
T Consensus 71 G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~~~~~~Fs~~l~~--- 147 (278)
T cd06097 71 GIVYTDTVSIGGVEVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFENALSSLDAPLFTADLRK--- 147 (278)
T ss_pred EEEEEEEEEECCEEECCeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHHHHHHhccCceEEEEecC---
Confidence 67899999999999999999999987752 2 258999999998765432 221 5899999976
Q ss_pred CCcceeeeCCCCCC----CCeeeccccCCCCCcceEeeeceEEECCeeeccCccceeeccCCCCceEEcccCceeeeCHH
Q 037264 65 DSTSTLEFDSSLPP----NAVTAPLLRNHELDTFYYLGLTGISVGGDLLPISETAFKIDESGNGGIIVDSGTAVTRLQTE 140 (249)
Q Consensus 65 ~~~G~l~~Gg~d~~----~~~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~ 140 (249)
..+|+|+|||+|++ ++.|+|+..+. .+|.|++++|+|+++..... ....++|||||+++++|++
T Consensus 148 ~~~G~l~fGg~D~~~~~g~l~~~pi~~~~---~~w~v~l~~i~v~~~~~~~~---------~~~~~iiDSGTs~~~lP~~ 215 (278)
T cd06097 148 AAPGFYTFGYIDESKYKGEISWTPVDNSS---GFWQFTSTSYTVGGDAPWSR---------SGFSAIADTGTTLILLPDA 215 (278)
T ss_pred CCCcEEEEeccChHHcCCceEEEEccCCC---cEEEEEEeeEEECCcceeec---------CCceEEeecCCchhcCCHH
Confidence 24799999999985 89999998642 79999999999998743211 1456899999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCCcccccccccccccCCcccCCeEEEEeCCCcEEEeCCCceEEEecCCCcEEEEEEcCCCCc
Q 037264 141 TYNALRDAFVRGTRALSPTDGVALFDTCYDFSSRSSVEVPTVSFHFPEGKVLPLPAKNYLIPVDSNGTFCFAFAPTSSSL 220 (249)
Q Consensus 141 ~~~~l~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~~~f~~g~~~~i~~~~y~~~~~~~~~~C~~~~~~~~~~ 220 (249)
++++|.+++.... +....+.+.+ +|.. .+|+|+|+| .
T Consensus 216 ~~~~l~~~l~g~~--~~~~~~~~~~-~C~~-------~~P~i~f~~---------------------------------~ 252 (278)
T cd06097 216 IVEAYYSQVPGAY--YDSEYGGWVF-PCDT-------TLPDLSFAV---------------------------------F 252 (278)
T ss_pred HHHHHHHhCcCCc--ccCCCCEEEE-ECCC-------CCCCEEEEE---------------------------------E
Confidence 9999998884221 1111222223 6764 279999999 6
Q ss_pred eeeehhhccccEEEEeCCCCEEEEee
Q 037264 221 SIIGNVQQQGTRVSFNLRNSLIGFTP 246 (249)
Q Consensus 221 ~ilG~~fl~~~y~vfD~~~~riGfa~ 246 (249)
||||++|||++|+|||++|+|||||+
T Consensus 253 ~ilGd~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 253 SILGDVFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred EEEcchhhCceeEEEcCCCceeeecC
Confidence 99999999999999999999999996
No 23
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=5.7e-33 Score=234.27 Aligned_cols=194 Identities=35% Similarity=0.574 Sum_probs=156.9
Q ss_pred CceEEEEEEeCCccccceEEeeeecCCCCc--CCcceeeecCCCC------Cccccccc------CCeeeEeeeCCC-CC
Q 037264 1 GDFVTETVTLGSASVDNIAIGCGHNNEGLF--VGAAGLLGLGGGS------LSFPSQIN------ASTFSYCLVDRD-SD 65 (249)
Q Consensus 1 G~~~~D~v~ig~~~~~~~~Fg~~~~~~~~~--~~~~GIlGLg~~~------~s~~~ql~------~~~Fs~~l~~~~-~~ 65 (249)
|.+++|+|+|++.+++++.|||++...+.+ ...+||||||+.. .+++.||. +++||+||.+.. ..
T Consensus 71 g~~~~D~v~~~~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~i~~~~Fs~~l~~~~~~~ 150 (283)
T cd05471 71 GGLGTDTVTIGGLTIPNQTFGCATSESGDFSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGLISSPVFSFYLGRDGDGG 150 (283)
T ss_pred EEEEEeEEEECCEEEeceEEEEEeccCCcccccccceEeecCCcccccccCCCHHHHHHHCCCCCCCEEEEEEcCCCCCC
Confidence 567899999999999999999999987632 3589999999987 67777765 699999998742 23
Q ss_pred CcceeeeCCCCCC----CCeeeccccCCCCCcceEeeeceEEECCeeeccCccceeeccCCCCceEEcccCceeeeCHHH
Q 037264 66 STSTLEFDSSLPP----NAVTAPLLRNHELDTFYYLGLTGISVGGDLLPISETAFKIDESGNGGIIVDSGTAVTRLQTET 141 (249)
Q Consensus 66 ~~G~l~~Gg~d~~----~~~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~ 141 (249)
..|+|+||++|+. ++.|+|++.. .+.+|.|.+++|.|+++..... .....++|||||++++||+++
T Consensus 151 ~~g~l~~Gg~d~~~~~~~~~~~p~~~~--~~~~~~v~l~~i~v~~~~~~~~--------~~~~~~iiDsGt~~~~lp~~~ 220 (283)
T cd05471 151 NGGELTFGGIDPSKYTGDLTYTPVVSN--GPGYWQVPLDGISVGGKSVISS--------SGGGGAIVDSGTSLIYLPSSV 220 (283)
T ss_pred CCCEEEEcccCccccCCceEEEecCCC--CCCEEEEEeCeEEECCceeeec--------CCCcEEEEecCCCCEeCCHHH
Confidence 5899999999985 8999999885 2379999999999998751111 124578999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCCcccccccccccccCCcccCCeEEEEeCCCcEEEeCCCceEEEecCCCcEEEEEEcCCCCce
Q 037264 142 YNALRDAFVRGTRALSPTDGVALFDTCYDFSSRSSVEVPTVSFHFPEGKVLPLPAKNYLIPVDSNGTFCFAFAPTSSSLS 221 (249)
Q Consensus 142 ~~~l~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~~~f~~g~~~~i~~~~y~~~~~~~~~~C~~~~~~~~~~~ 221 (249)
|++|.+++.+.... ...|+...+.....+|+|+|+| .+
T Consensus 221 ~~~l~~~~~~~~~~---------~~~~~~~~~~~~~~~p~i~f~f---------------------------------~~ 258 (283)
T cd05471 221 YDAILKALGAAVSS---------SDGGYGVDCSPCDTLPDITFTF---------------------------------LW 258 (283)
T ss_pred HHHHHHHhCCcccc---------cCCcEEEeCcccCcCCCEEEEE---------------------------------EE
Confidence 99999999665432 1122222222337789999999 69
Q ss_pred eeehhhccccEEEEeCCCCEEEEee
Q 037264 222 IIGNVQQQGTRVSFNLRNSLIGFTP 246 (249)
Q Consensus 222 ilG~~fl~~~y~vfD~~~~riGfa~ 246 (249)
|||++|||++|++||.+++|||||+
T Consensus 259 ilG~~fl~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 259 ILGDVFLRNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred EccHhhhhheEEEEeCCCCEEeecC
Confidence 9999999999999999999999985
No 24
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.97 E-value=7.7e-31 Score=203.93 Aligned_cols=151 Identities=46% Similarity=0.823 Sum_probs=123.5
Q ss_pred ceEeeeceEEECCeeeccCccceeeccCCCCceEEcccCceeeeCHHHHHHHHHHHHHhhccCC--C-CCcccccccccc
Q 037264 94 FYYLGLTGISVGGDLLPISETAFKIDESGNGGIIVDSGTAVTRLQTETYNALRDAFVRGTRALS--P-TDGVALFDTCYD 170 (249)
Q Consensus 94 ~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l~~~i~~~~~~~~--~-~~~~~~~~~C~~ 170 (249)
+|.|+|++|+|+++.+.+++..++. +++.+++||||||++++||+++|++|++++.+++.... + ......++.||+
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~-~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~ 79 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQL-SDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYN 79 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCE-TTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEE
T ss_pred CccEEEEEEEECCEEecCChHHhhc-cCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceee
Confidence 4899999999999999999998887 77789999999999999999999999999999876442 2 233456779999
Q ss_pred ccc----CCcccCCeEEEEeCCCcEEEeCCCceEEEecCCCcEEEEEEcC---CCCceeeehhhccccEEEEeCCCCEEE
Q 037264 171 FSS----RSSVEVPTVSFHFPEGKVLPLPAKNYLIPVDSNGTFCFAFAPT---SSSLSIIGNVQQQGTRVSFNLRNSLIG 243 (249)
Q Consensus 171 ~~~----~~~~~~p~i~~~f~~g~~~~i~~~~y~~~~~~~~~~C~~~~~~---~~~~~ilG~~fl~~~y~vfD~~~~riG 243 (249)
.+. ..+..+|+|+|+|.+|+.++++|++|++... ++.+|++|.+. ..+..|||..+|++++++||++++|||
T Consensus 80 ~~~~~~~~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~-~~~~Cla~~~~~~~~~~~~viG~~~~~~~~v~fDl~~~~ig 158 (161)
T PF14541_consen 80 LSSFGVNRDWAKFPTITLHFEGGADLTLPPENYFVQVS-PGVFCLAFVPSDADDDGVSVIGNFQQQNYHVVFDLENGRIG 158 (161)
T ss_dssp GGCS-EETTEESS--EEEEETTSEEEEE-HHHHEEEEC-TTEEEESEEEETSTTSSSEEE-HHHCCTEEEEEETTTTEEE
T ss_pred ccccccccccccCCeEEEEEeCCcceeeeccceeeecc-CCCEEEEEEccCCCCCCcEEECHHHhcCcEEEEECCCCEEE
Confidence 876 3568999999999889999999999999988 78999998877 468999999999999999999999999
Q ss_pred Eee
Q 037264 244 FTP 246 (249)
Q Consensus 244 fa~ 246 (249)
|+|
T Consensus 159 F~~ 161 (161)
T PF14541_consen 159 FAP 161 (161)
T ss_dssp EEE
T ss_pred EeC
Confidence 996
No 25
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.43 E-value=1.4e-13 Score=107.17 Aligned_cols=74 Identities=46% Similarity=0.860 Sum_probs=61.4
Q ss_pred CceEEEEEEeCC-----ccccceEEeeeecCCCCcCCcceeeecCCCCCcccccc---cCCeeeEeeeCCCCCCcceeee
Q 037264 1 GDFVTETVTLGS-----ASVDNIAIGCGHNNEGLFVGAAGLLGLGGGSLSFPSQI---NASTFSYCLVDRDSDSTSTLEF 72 (249)
Q Consensus 1 G~~~~D~v~ig~-----~~~~~~~Fg~~~~~~~~~~~~~GIlGLg~~~~s~~~ql---~~~~Fs~~l~~~~~~~~G~l~~ 72 (249)
|.+++|+|+++. ..+.++.|||++...+.+..++||||||+.++|+++|| ..++|||||.+......|.|+|
T Consensus 83 G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g~~~~~~GilGLg~~~~Sl~sQl~~~~~~~FSyCL~~~~~~~~g~l~f 162 (164)
T PF14543_consen 83 GFLASDTLTFGSSSGGSNSVPDFIFGCATSNSGLFYGADGILGLGRGPLSLPSQLASSSGNKFSYCLPSSSPSSSGFLSF 162 (164)
T ss_dssp EEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGTSSTTEEEEEE-SSSTTSHHHHHHHH--SEEEEEB-S-SSSSEEEEEE
T ss_pred CceEEEEEEecCCCCCCceeeeEEEEeeeccccCCcCCCcccccCCCcccHHHHHHHhcCCeEEEECCCCCCCCCEEEEe
Confidence 689999999985 45789999999999998888999999999999999999 6999999999844456999999
Q ss_pred CC
Q 037264 73 DS 74 (249)
Q Consensus 73 Gg 74 (249)
|+
T Consensus 163 G~ 164 (164)
T PF14543_consen 163 GD 164 (164)
T ss_dssp CS
T ss_pred Cc
Confidence 95
No 26
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=97.84 E-value=1.8e-05 Score=56.88 Aligned_cols=39 Identities=36% Similarity=0.626 Sum_probs=34.0
Q ss_pred CceEEEEEEeCCccccceEEeeeecCCCCc---CCcceeeec
Q 037264 1 GDFVTETVTLGSASVDNIAIGCGHNNEGLF---VGAAGLLGL 39 (249)
Q Consensus 1 G~~~~D~v~ig~~~~~~~~Fg~~~~~~~~~---~~~~GIlGL 39 (249)
|.+++|+|+|++..++++.|||++...+.+ ...+|||||
T Consensus 68 g~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 68 GGLSTDTVSIGDIEVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred EEEEEEEEEECCEEECCEEEEEEEecCCccccccccccccCC
Confidence 567899999999999999999999998753 357999998
No 27
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=96.67 E-value=0.0073 Score=44.55 Aligned_cols=27 Identities=11% Similarity=0.182 Sum_probs=23.7
Q ss_pred CCceeeehhhccccEEEEeCCCCEEEE
Q 037264 218 SSLSIIGNVQQQGTRVSFNLRNSLIGF 244 (249)
Q Consensus 218 ~~~~ilG~~fl~~~y~vfD~~~~riGf 244 (249)
....|||..||+.+-.+-|.++++|-+
T Consensus 98 ~~d~ILG~d~L~~~~~~ID~~~~~i~~ 124 (124)
T cd05479 98 DVDFLIGLDMLKRHQCVIDLKENVLRI 124 (124)
T ss_pred CcCEEecHHHHHhCCeEEECCCCEEEC
Confidence 456899999999999999999998853
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=96.27 E-value=0.14 Score=37.59 Aligned_cols=35 Identities=26% Similarity=0.405 Sum_probs=27.4
Q ss_pred cceEeeeceEEECCeeeccCccceeeccCCCCceEEcccCceeeeCHHHHHHH
Q 037264 93 TFYYLGLTGISVGGDLLPISETAFKIDESGNGGIIVDSGTAVTRLQTETYNAL 145 (249)
Q Consensus 93 ~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l 145 (249)
++|.++ ++|||+++. ++||||++.+.+++++.+++
T Consensus 10 g~~~v~---~~InG~~~~---------------flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 10 GHFYAT---GRVNGRNVR---------------FLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CeEEEE---EEECCEEEE---------------EEEECCCCcEEcCHHHHHHc
Confidence 566655 778888553 39999999999999987665
No 29
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=96.03 E-value=0.043 Score=39.32 Aligned_cols=24 Identities=17% Similarity=0.336 Sum_probs=21.2
Q ss_pred CceeeehhhccccEEEEeCCCCEE
Q 037264 219 SLSIIGNVQQQGTRVSFNLRNSLI 242 (249)
Q Consensus 219 ~~~ilG~~fl~~~y~vfD~~~~ri 242 (249)
+..+||..||+.+-++-|+.+.++
T Consensus 84 ~~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 84 DEPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred CccEecHHHHhhCCEEEehhhCcC
Confidence 478999999999999999988753
No 30
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=95.48 E-value=0.029 Score=42.00 Aligned_cols=30 Identities=10% Similarity=0.061 Sum_probs=26.7
Q ss_pred CCceeeehhhccccEEEEeCCCCEEEEeeC
Q 037264 218 SSLSIIGNVQQQGTRVSFNLRNSLIGFTPN 247 (249)
Q Consensus 218 ~~~~ilG~~fl~~~y~vfD~~~~riGfa~~ 247 (249)
+-..|||..||+.+..+-|+.+++|-|...
T Consensus 103 ~~DvILGm~WL~~~~~~IDw~~k~v~f~~p 132 (135)
T PF08284_consen 103 GYDVILGMDWLKKHNPVIDWATKTVTFNSP 132 (135)
T ss_pred ceeeEeccchHHhCCCEEEccCCEEEEeCC
Confidence 346899999999999999999999999754
No 31
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=91.50 E-value=0.37 Score=33.14 Aligned_cols=29 Identities=31% Similarity=0.558 Sum_probs=24.5
Q ss_pred EEECCeeeccCccceeeccCCCCceEEcccCceeeeCHHHHHHH
Q 037264 102 ISVGGDLLPISETAFKIDESGNGGIIVDSGTAVTRLQTETYNAL 145 (249)
Q Consensus 102 i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l 145 (249)
+.|||+.+. +.+|||++.+.++.+.+..+
T Consensus 5 ~~Ing~~i~---------------~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 5 LLVNGKPLK---------------FQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEECCEEEE---------------EEEcCCcceEEeCHHHHHHh
Confidence 778888764 39999999999999988766
No 32
>PF13650 Asp_protease_2: Aspartyl protease
Probab=91.40 E-value=0.3 Score=33.04 Aligned_cols=20 Identities=15% Similarity=0.466 Sum_probs=17.8
Q ss_pred eEEcccCceeeeCHHHHHHH
Q 037264 126 IIVDSGTAVTRLQTETYNAL 145 (249)
Q Consensus 126 ~iiDSGTt~~~lp~~~~~~l 145 (249)
+++|||++.+.++++.++++
T Consensus 12 ~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 12 FLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEEcCCCCcEEECHHHHHHc
Confidence 49999999999999988776
No 33
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=89.35 E-value=0.77 Score=31.35 Aligned_cols=20 Identities=25% Similarity=0.466 Sum_probs=17.2
Q ss_pred eEEcccCceeeeCHHHHHHH
Q 037264 126 IIVDSGTAVTRLQTETYNAL 145 (249)
Q Consensus 126 ~iiDSGTt~~~lp~~~~~~l 145 (249)
+++|||++.+.++.+..+++
T Consensus 16 ~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 16 FLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEECCCCcEEcCHHHHHHc
Confidence 39999999999999877655
No 34
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=87.07 E-value=0.9 Score=30.94 Aligned_cols=29 Identities=24% Similarity=0.354 Sum_probs=23.7
Q ss_pred EEECCeeeccCccceeeccCCCCceEEcccCceeeeCHHHHHHH
Q 037264 102 ISVGGDLLPISETAFKIDESGNGGIIVDSGTAVTRLQTETYNAL 145 (249)
Q Consensus 102 i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l 145 (249)
+.|||+.+. +++|||.+.+.++++..+.+
T Consensus 3 v~InG~~~~---------------fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPIV---------------FLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEEE---------------EEEECCCCeEEECHHHhhhc
Confidence 567777664 39999999999999988765
No 35
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=86.38 E-value=1.2 Score=29.15 Aligned_cols=29 Identities=24% Similarity=0.424 Sum_probs=24.3
Q ss_pred EEECCeeeccCccceeeccCCCCceEEcccCceeeeCHHHHHHH
Q 037264 102 ISVGGDLLPISETAFKIDESGNGGIIVDSGTAVTRLQTETYNAL 145 (249)
Q Consensus 102 i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l 145 (249)
+.|+++.+. +++|||++-.+++.+..+.+
T Consensus 13 ~~I~g~~~~---------------alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 13 VSIGGVQVK---------------ALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEECCEEEE---------------EEEeCCCcceecCHHHHHHh
Confidence 777877663 39999999999999988777
No 36
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=86.16 E-value=8 Score=26.63 Aligned_cols=78 Identities=15% Similarity=0.111 Sum_probs=42.8
Q ss_pred CCceEEcccCceeeeCHHHHHHHHHHHHHhhccCCCCCcccccccccccccCCcccCCeEEEEeCCCcEEEeCCCceEEE
Q 037264 123 NGGIIVDSGTAVTRLQTETYNALRDAFVRGTRALSPTDGVALFDTCYDFSSRSSVEVPTVSFHFPEGKVLPLPAKNYLIP 202 (249)
Q Consensus 123 ~~~~iiDSGTt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~~~f~~g~~~~i~~~~y~~~ 202 (249)
+...+||||+....+|....+.- . . -.++.+.=++|..+....+..+.-
T Consensus 9 ~~~fLVDTGA~vSviP~~~~~~~-------------------~----~--------~~~~~l~AANgt~I~tyG~~~l~l 57 (89)
T cd06094 9 GLRFLVDTGAAVSVLPASSTKKS-------------------L----K--------PSPLTLQAANGTPIATYGTRSLTL 57 (89)
T ss_pred CcEEEEeCCCceEeecccccccc-------------------c----c--------CCceEEEeCCCCeEeeeeeEEEEE
Confidence 44679999999999997533210 0 0 023344445666666665554433
Q ss_pred ecCCCcEEE-EEEcCCCCceeeehhhcccc
Q 037264 203 VDSNGTFCF-AFAPTSSSLSIIGNVQQQGT 231 (249)
Q Consensus 203 ~~~~~~~C~-~~~~~~~~~~ilG~~fl~~~ 231 (249)
.-.-..... .|.-.+-+..|||.-||+++
T Consensus 58 dlGlrr~~~w~FvvAdv~~pIlGaDfL~~~ 87 (89)
T cd06094 58 DLGLRRPFAWNFVVADVPHPILGADFLQHY 87 (89)
T ss_pred EcCCCcEEeEEEEEcCCCcceecHHHHHHc
Confidence 221111111 12222335679999999986
No 37
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=81.55 E-value=3.3 Score=33.11 Aligned_cols=36 Identities=25% Similarity=0.368 Sum_probs=28.2
Q ss_pred CcceEeeeceEEECCeeeccCccceeeccCCCCceEEcccCceeeeCHHHHHHH
Q 037264 92 DTFYYLGLTGISVGGDLLPISETAFKIDESGNGGIIVDSGTAVTRLQTETYNAL 145 (249)
Q Consensus 92 ~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l 145 (249)
++||.++ ..|||+.+. .++|||.|.+.++.+..+.+
T Consensus 103 ~GHF~a~---~~VNGk~v~---------------fLVDTGATsVal~~~dA~Rl 138 (215)
T COG3577 103 DGHFEAN---GRVNGKKVD---------------FLVDTGATSVALNEEDARRL 138 (215)
T ss_pred CCcEEEE---EEECCEEEE---------------EEEecCcceeecCHHHHHHh
Confidence 3566544 789999874 29999999999999877555
No 38
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=76.14 E-value=11 Score=29.06 Aligned_cols=20 Identities=20% Similarity=0.516 Sum_probs=17.2
Q ss_pred eEEcccCceeeeCHHHHHHH
Q 037264 126 IIVDSGTAVTRLQTETYNAL 145 (249)
Q Consensus 126 ~iiDSGTt~~~lp~~~~~~l 145 (249)
+++|||++..+.-+++.+.|
T Consensus 48 vLfDSGSPTSfIr~di~~kL 67 (177)
T PF12384_consen 48 VLFDSGSPTSFIRSDIVEKL 67 (177)
T ss_pred EEEeCCCccceeehhhHHhh
Confidence 59999999999888877666
No 39
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=75.69 E-value=3.4 Score=28.61 Aligned_cols=21 Identities=19% Similarity=0.295 Sum_probs=18.4
Q ss_pred eEEcccCceeeeCHHHHHHHH
Q 037264 126 IIVDSGTAVTRLQTETYNALR 146 (249)
Q Consensus 126 ~iiDSGTt~~~lp~~~~~~l~ 146 (249)
+.+|||++...+|.+.|+.+-
T Consensus 13 ~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 13 FQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred EEEecCCEEEeccHHHHhhhc
Confidence 499999999999999887664
No 40
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis
Probab=75.17 E-value=5.1 Score=32.04 Aligned_cols=27 Identities=19% Similarity=0.044 Sum_probs=19.8
Q ss_pred CCceeeehhhccccEEEEeCCCCEEEEe
Q 037264 218 SSLSIIGNVQQQGTRVSFNLRNSLIGFT 245 (249)
Q Consensus 218 ~~~~ilG~~fl~~~y~vfD~~~~riGfa 245 (249)
+-..|||.+|+|.++=.-+.+ .+|-|.
T Consensus 90 g~d~IlG~NF~r~y~Pfiq~~-~~I~f~ 116 (201)
T PF02160_consen 90 GIDIILGNNFLRLYEPFIQTE-DRIQFH 116 (201)
T ss_pred CCCEEecchHHHhcCCcEEEc-cEEEEE
Confidence 457999999999887666554 356654
No 41
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=75.14 E-value=2.5 Score=30.91 Aligned_cols=20 Identities=20% Similarity=0.300 Sum_probs=18.0
Q ss_pred eEEcccCc-eeeeCHHHHHHH
Q 037264 126 IIVDSGTA-VTRLQTETYNAL 145 (249)
Q Consensus 126 ~iiDSGTt-~~~lp~~~~~~l 145 (249)
.+||||-+ ++.+|+++++++
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~ 49 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKL 49 (125)
T ss_pred eEEecCCceeEEeCHHHHHhc
Confidence 48999999 999999999776
No 42
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=74.17 E-value=56 Score=28.74 Aligned_cols=14 Identities=21% Similarity=0.226 Sum_probs=12.5
Q ss_pred EEcccCceeeeCHH
Q 037264 127 IVDSGTAVTRLQTE 140 (249)
Q Consensus 127 iiDSGTt~~~lp~~ 140 (249)
.||||+.-.++|..
T Consensus 259 f~DSGSNg~fF~d~ 272 (370)
T PF11925_consen 259 FFDSGSNGYFFPDS 272 (370)
T ss_pred eEecCCceeeccCC
Confidence 99999999999864
No 43
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=71.40 E-value=3.6 Score=27.86 Aligned_cols=34 Identities=21% Similarity=0.372 Sum_probs=25.8
Q ss_pred EEEEEeCCccccceEEeeeecCCCCcCCcceeeecCC
Q 037264 5 TETVTLGSASVDNIAIGCGHNNEGLFVGAAGLLGLGG 41 (249)
Q Consensus 5 ~D~v~ig~~~~~~~~Fg~~~~~~~~~~~~~GIlGLg~ 41 (249)
.+.+++|+..++++.+........ ..+||||+.+
T Consensus 61 ~~~i~ig~~~~~~~~~~v~d~~~~---~~~gIlG~d~ 94 (96)
T cd05483 61 LDSLQIGGITLRNVPAVVLPGDAL---GVDGLLGMDF 94 (96)
T ss_pred cceEEECCcEEeccEEEEeCCccc---CCceEeChHH
Confidence 567888888888888877766543 5789999864
No 44
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=71.15 E-value=3.2 Score=28.73 Aligned_cols=26 Identities=15% Similarity=0.466 Sum_probs=20.4
Q ss_pred eEEECCeeeccCccceeeccCCCCceEEcccCceeeeCHHH
Q 037264 101 GISVGGDLLPISETAFKIDESGNGGIIVDSGTAVTRLQTET 141 (249)
Q Consensus 101 ~i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~ 141 (249)
.|.++++.+. +++|||++.++++.+.
T Consensus 9 ~v~i~g~~i~---------------~LlDTGA~vsiI~~~~ 34 (100)
T PF00077_consen 9 TVKINGKKIK---------------ALLDTGADVSIISEKD 34 (100)
T ss_dssp EEEETTEEEE---------------EEEETTBSSEEESSGG
T ss_pred EEeECCEEEE---------------EEEecCCCcceecccc
Confidence 3677777653 4999999999999853
No 45
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=67.86 E-value=7.2 Score=28.69 Aligned_cols=29 Identities=17% Similarity=0.236 Sum_probs=22.4
Q ss_pred EEECCeeeccCccceeeccCCCCceEEcccCceeeeCHHHHHHH
Q 037264 102 ISVGGDLLPISETAFKIDESGNGGIIVDSGTAVTRLQTETYNAL 145 (249)
Q Consensus 102 i~v~~~~~~~~~~~~~~~~~~~~~~iiDSGTt~~~lp~~~~~~l 145 (249)
+++||+.+. ++||||+..+.++.+.++++
T Consensus 29 ~~ing~~vk---------------A~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 29 CKINGVPVK---------------AFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEETTEEEE---------------EEEETT-SS-EEEHHHHHHT
T ss_pred EEECCEEEE---------------EEEeCCCCccccCHHHHHHc
Confidence 778888773 39999999999999888764
No 46
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=55.50 E-value=78 Score=27.72 Aligned_cols=40 Identities=8% Similarity=0.102 Sum_probs=32.6
Q ss_pred cEEEE-EEcCCCCceeeehhhccccEEEEeCCCCEEEEeeC
Q 037264 208 TFCFA-FAPTSSSLSIIGNVQQQGTRVSFNLRNSLIGFTPN 247 (249)
Q Consensus 208 ~~C~~-~~~~~~~~~ilG~~fl~~~y~vfD~~~~riGfa~~ 247 (249)
..|-. ++...+....||.-.||.+-..-|++++++-++..
T Consensus 306 l~c~ftV~d~~~~d~llGLd~Lrr~~ccIdL~~~~L~ig~~ 346 (380)
T KOG0012|consen 306 LPCSFTVLDRRDMDLLLGLDMLRRHQCCIDLKTNVLRIGNT 346 (380)
T ss_pred eccceEEecCCCcchhhhHHHHHhccceeecccCeEEecCC
Confidence 34744 66665677999999999999999999999988753
No 47
>cd00303 retropepsin_like Retropepsins; pepsin-like aspartate proteases. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples
Probab=31.09 E-value=40 Score=21.09 Aligned_cols=20 Identities=30% Similarity=0.423 Sum_probs=16.7
Q ss_pred eEEcccCceeeeCHHHHHHH
Q 037264 126 IIVDSGTAVTRLQTETYNAL 145 (249)
Q Consensus 126 ~iiDSGTt~~~lp~~~~~~l 145 (249)
+++|+|++...+..+.+...
T Consensus 12 ~liDtgs~~~~~~~~~~~~~ 31 (92)
T cd00303 12 ALVDSGASVNFISESLAKKL 31 (92)
T ss_pred EEEcCCCcccccCHHHHHHc
Confidence 49999999999999877543
No 48
>PF05585 DUF1758: Putative peptidase (DUF1758); InterPro: IPR008737 This is a family of nematode proteins of unknown function []. However, it seems likely that these proteins act as aspartic peptidases.
Probab=27.77 E-value=33 Score=26.20 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=17.5
Q ss_pred ceEEcccCceeeeCHHHHHHH
Q 037264 125 GIIVDSGTAVTRLQTETYNAL 145 (249)
Q Consensus 125 ~~iiDSGTt~~~lp~~~~~~l 145 (249)
.+++|||+...+.-+++.+.|
T Consensus 14 ~~LlDsGSq~SfIt~~la~~L 34 (164)
T PF05585_consen 14 RALLDSGSQRSFITESLANKL 34 (164)
T ss_pred EEEEecCCchhHHhHHHHHHh
Confidence 579999999999888777665
No 49
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=26.50 E-value=82 Score=26.82 Aligned_cols=15 Identities=20% Similarity=0.463 Sum_probs=13.3
Q ss_pred eEEcccCceeeeCHH
Q 037264 126 IIVDSGTAVTRLQTE 140 (249)
Q Consensus 126 ~iiDSGTt~~~lp~~ 140 (249)
++||||++.+.+|..
T Consensus 26 v~~DTGSs~lWv~~~ 40 (317)
T cd06098 26 VIFDTGSSNLWVPSS 40 (317)
T ss_pred EEECCCccceEEecC
Confidence 499999999999964
No 50
>TIGR03778 VPDSG_CTERM VPDSG-CTERM exosortase interaction domain. Through in silico analysis, we previously described the PEP-CTERM/exosortase system (PubMed:16930487). This model describes a PEP-CTERM-like variant C-terminal protein sorting signal, as found at the C-terminus of twenty otherwise unrelated proteins in Verrucomicrobiae bacterium DG1235. The variant motif, VPDSG, seems an intermediate between the VPEP motif (TIGR02595) of typical exosortase systems and the classical LPXTG of sortase in Gram-positive bacteria.
Probab=26.33 E-value=12 Score=19.40 Aligned_cols=11 Identities=36% Similarity=0.531 Sum_probs=7.7
Q ss_pred cccCceeeeCH
Q 037264 129 DSGTAVTRLQT 139 (249)
Q Consensus 129 DSGTt~~~lp~ 139 (249)
|||||+..+--
T Consensus 3 DsGST~~Ll~~ 13 (26)
T TIGR03778 3 DSGSTLALLGL 13 (26)
T ss_pred CchhHHHHHHH
Confidence 78888776543
No 51
>PRK09784 hypothetical protein; Provisional
Probab=25.96 E-value=1.1e+02 Score=25.18 Aligned_cols=25 Identities=16% Similarity=0.323 Sum_probs=19.1
Q ss_pred CCceEEcccCce-eeeCHHHHHHHHH
Q 037264 123 NGGIIVDSGTAV-TRLQTETYNALRD 147 (249)
Q Consensus 123 ~~~~iiDSGTt~-~~lp~~~~~~l~~ 147 (249)
..+-+|.+|.++ +|||++++.+-.+
T Consensus 374 eygylintGnhYdvYLpPELfaqAy~ 399 (417)
T PRK09784 374 EYGYLINTGNHYDVYLPPELFAQAYK 399 (417)
T ss_pred ceeeEEecCceeEEecCHHHHHHHHH
Confidence 567799998765 6999998876543
Done!