BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037265
(305 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SU3|A Chain A, X-Ray Structure Of Human Prommp-1: New Insights Into
Collagenase Action
pdb|1SU3|B Chain B, X-Ray Structure Of Human Prommp-1: New Insights Into
Collagenase Action
Length = 450
Score = 124 bits (312), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 83/221 (37%), Positives = 108/221 (48%), Gaps = 30/221 (13%)
Query: 92 IKTYQINFNLNATGTLDLQTISTMAQPRCGLPDIINGTTRMQRGSTDKKYDIHYAFFEG- 150
+K Q F L TG D +T+ M QPRCG+PD+ + EG
Sbjct: 45 LKQMQEFFGLKVTGKPDAETLKVMKQPRCGVPDVA-----------------QFVLTEGN 87
Query: 151 PRWPLTKKTVTYAFQPGT----RDDIHEPVRVALLLWSNWAPFTFEGSNDYENADIKISF 206
PRW T +TY + T R D+ + A LWSN P TF ++ + ADI ISF
Sbjct: 88 PRWEQTH--LTYRIENYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSEGQ-ADIMISF 144
Query: 207 QRGDHGDGTPFDGPWHTLGHAFSDPYAV---VHFNGDVNWVMGTVKGGFDMQTVALHELG 263
RGDH D +PFDGP L HAF + HF+ D W + +++ VA HELG
Sbjct: 145 VRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWTNNFRE--YNLHRVAAHELG 202
Query: 264 HVLGLSHSSVKAASMWPSTRAGTTKGLNDDDIRRMKMLYGR 304
H LGLSHS+ A M+PS L DDI ++ +YGR
Sbjct: 203 HSLGLSHSTDIGALMYPSYTFSGDVQLAQDDIDGIQAIYGR 243
>pdb|1SLM|A Chain A, Crystal Structure Of Fibroblast Stromelysin-1: The
C-Truncated Human Proenzyme
Length = 255
Score = 107 bits (268), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 81/223 (36%), Positives = 106/223 (47%), Gaps = 33/223 (14%)
Query: 92 IKTYQINFNLNATGTLDLQTISTMAQPRCGLPDIINGTTRMQRGSTDKKYDIHYAFFEG- 150
I+ Q L TG LD T+ M +PRCG+PD+ H+ F G
Sbjct: 47 IREMQKFLGLEVTGKLDSDTLEVMRKPRCGVPDVG-----------------HFRTFPGI 89
Query: 151 PRWP---LTKKTVTYAFQPGTRDDIHEPVRVALLLWSNWAPFTFEGSNDYE-NADIKISF 206
P+W LT + V Y +D + V AL +W P TF S YE ADI ISF
Sbjct: 90 PKWRKTHLTYRIVNYT-PDLPKDAVDSAVEKALKVWEEVTPLTF--SRLYEGEADIMISF 146
Query: 207 QRGDHGDGTPFDGPWHTLGHAFSDPYAV---VHFNGDVNWVMGTVKGGFDMQTVALHELG 263
+HGD PFDGP + L HA++ + HF+ D W T G ++ VA HE+G
Sbjct: 147 AVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWTKDTT--GTNLFLVAAHEIG 204
Query: 264 HVLGLSHSSVKAASMWP---STRAGTTKGLNDDDIRRMKMLYG 303
H LGL HS+ A M+P S T L+ DDI ++ LYG
Sbjct: 205 HSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLYG 247
>pdb|2JSD|A Chain A, Solution Structure Of Mmp20 Complexed With Nngh
Length = 160
Score = 107 bits (267), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 67/162 (41%), Positives = 91/162 (56%), Gaps = 14/162 (8%)
Query: 151 PRWPLTKKTVTYAFQPGTRD----DIHEPVRVALLLWSNWAPFTFEGSNDYENADIKISF 206
P+W K T+TY T ++ + V +AL WS+ P +F N E ADI ISF
Sbjct: 3 PKW--KKNTLTYRISKYTPSMSSVEVDKAVEMALQAWSSAVPLSFVRINSGE-ADIMISF 59
Query: 207 QRGDHGDGTPFDGPWHTLGHAFSDPYAV---VHFNGDVNWVMGTVKGGFDMQTVALHELG 263
+ GDHGD PFDGP TL HAF+ + HF+ W MGT GF++ TVA HE G
Sbjct: 60 ENGDHGDSYPFDGPRGTLAHAFAPGEGLGGDTHFDNAEKWTMGT--NGFNLFTVAAHEFG 117
Query: 264 HVLGLSHSSVKAASMWPSTRAGTTKG--LNDDDIRRMKMLYG 303
H LGL+HS+ +A M+P+ + G L DD++ ++ LYG
Sbjct: 118 HALGLAHSTDPSALMYPTYKYKNPYGFHLPKDDVKGIQALYG 159
>pdb|3AYK|A Chain A, Catalytic Fragment Of Human Fibroblast Collagenase
Complexed With Cgs-27023a, Nmr, Minimized Average
Structure
pdb|4AYK|A Chain A, Catalytic Fragment Of Human Fibroblast Collagenase
Complexed With Cgs-27023a, Nmr, 30 Structures
pdb|1AYK|A Chain A, Inhibitor-Free Catalytic Fragment Of Human Fibroblast
Collagenase, Nmr, 30 Structures
pdb|1HFC|A Chain A, 1.56 Angstrom Structure Of Mature Truncated Human
Fibroblast Collagenase
pdb|2AYK|A Chain A, Inhibitor-Free Catalytic Fragment Of Human Fibroblast
Collagenase, Nmr, Minimized Average Structure
pdb|2TCL|A Chain A, Structure Of The Catalytic Domain Of Human Fibroblast
Collagenase Complexed With An Inhibitor
Length = 169
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/161 (40%), Positives = 84/161 (52%), Gaps = 12/161 (7%)
Query: 151 PRWPLTKKTVTYAFQPGT----RDDIHEPVRVALLLWSNWAPFTFEGSNDYENADIKISF 206
PRW T +TY + T R D+ + A LWSN P TF ++ + ADI ISF
Sbjct: 7 PRWEQTH--LTYRIENYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSEGQ-ADIMISF 63
Query: 207 QRGDHGDGTPFDGPWHTLGHAFSDPYAV---VHFNGDVNWVMGTVKGGFDMQTVALHELG 263
RGDH D +PFDGP L HAF + HF+ D W + +++ VA HELG
Sbjct: 64 VRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWTNNFRE--YNLHRVAAHELG 121
Query: 264 HVLGLSHSSVKAASMWPSTRAGTTKGLNDDDIRRMKMLYGR 304
H LGLSHS+ A M+PS L DDI ++ +YGR
Sbjct: 122 HSLGLSHSTDIGALMYPSYTFSGDVQLAQDDIDGIQAIYGR 162
>pdb|2J0T|A Chain A, Crystal Structure Of The Catalytic Domain Of Mmp-1 In
Complex With The Inhibitory Domain Of Timp-1
pdb|2J0T|B Chain B, Crystal Structure Of The Catalytic Domain Of Mmp-1 In
Complex With The Inhibitory Domain Of Timp-1
pdb|2J0T|C Chain C, Crystal Structure Of The Catalytic Domain Of Mmp-1 In
Complex With The Inhibitory Domain Of Timp-1
Length = 170
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/161 (40%), Positives = 84/161 (52%), Gaps = 12/161 (7%)
Query: 151 PRWPLTKKTVTYAFQPGT----RDDIHEPVRVALLLWSNWAPFTFEGSNDYENADIKISF 206
PRW T +TY + T R D+ + A LWSN P TF ++ + ADI ISF
Sbjct: 8 PRWEQTH--LTYRIENYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSEGQ-ADIMISF 64
Query: 207 QRGDHGDGTPFDGPWHTLGHAFSDPYAV---VHFNGDVNWVMGTVKGGFDMQTVALHELG 263
RGDH D +PFDGP L HAF + HF+ D W + +++ VA HELG
Sbjct: 65 VRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWTNNFRE--YNLHRVAAHELG 122
Query: 264 HVLGLSHSSVKAASMWPSTRAGTTKGLNDDDIRRMKMLYGR 304
H LGLSHS+ A M+PS L DDI ++ +YGR
Sbjct: 123 HSLGLSHSTDIGALMYPSYTFSGDVQLAQDDIDGIQAIYGR 163
>pdb|1CGF|A Chain A, Crystal Structures Of Recombinant 19-Kda Human Fibroblast
Collagenase Complexed To Itself
pdb|1CGF|B Chain B, Crystal Structures Of Recombinant 19-Kda Human Fibroblast
Collagenase Complexed To Itself
Length = 162
Score = 97.4 bits (241), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 83/161 (51%), Gaps = 12/161 (7%)
Query: 151 PRWPLTKKTVTYAFQPGT----RDDIHEPVRVALLLWSNWAPFTFEGSNDYENADIKISF 206
PRW T + Y + T R D+ + A LWSN P TF ++ + ADI ISF
Sbjct: 6 PRWEQTH--LRYRIENYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSEGQ-ADIMISF 62
Query: 207 QRGDHGDGTPFDGPWHTLGHAFSDPYAV---VHFNGDVNWVMGTVKGGFDMQTVALHELG 263
RGDH D +PFDGP L HAF + HF+ D W + +++ VA HELG
Sbjct: 63 VRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWTNNFRE--YNLHRVAAHELG 120
Query: 264 HVLGLSHSSVKAASMWPSTRAGTTKGLNDDDIRRMKMLYGR 304
H LGLSHS+ A M+PS L DDI ++ +YGR
Sbjct: 121 HSLGLSHSTDIGALMYPSYTFSGDVQLAQDDIDGIQAIYGR 161
>pdb|1CGE|A Chain A, Crystal Structures Of Recombinant 19-Kda Human Fibroblast
Collagenase Complexed To Itself
Length = 168
Score = 97.4 bits (241), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 83/161 (51%), Gaps = 12/161 (7%)
Query: 151 PRWPLTKKTVTYAFQPGT----RDDIHEPVRVALLLWSNWAPFTFEGSNDYENADIKISF 206
PRW T + Y + T R D+ + A LWSN P TF ++ + ADI ISF
Sbjct: 6 PRWEQTH--LRYRIENYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSEGQ-ADIMISF 62
Query: 207 QRGDHGDGTPFDGPWHTLGHAFSDPYAV---VHFNGDVNWVMGTVKGGFDMQTVALHELG 263
RGDH D +PFDGP L HAF + HF+ D W + +++ VA HELG
Sbjct: 63 VRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWTNNFRE--YNLHRVAAHELG 120
Query: 264 HVLGLSHSSVKAASMWPSTRAGTTKGLNDDDIRRMKMLYGR 304
H LGLSHS+ A M+PS L DDI ++ +YGR
Sbjct: 121 HSLGLSHSTDIGALMYPSYTFSGDVQLAQDDIDGIQAIYGR 161
>pdb|3SHI|A Chain A, Crystal Structure Of Human Mmp1 Catalytic Domain At 2.2 A
Resolution
pdb|3SHI|G Chain G, Crystal Structure Of Human Mmp1 Catalytic Domain At 2.2 A
Resolution
pdb|3SHI|M Chain M, Crystal Structure Of Human Mmp1 Catalytic Domain At 2.2 A
Resolution
Length = 156
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/160 (40%), Positives = 83/160 (51%), Gaps = 12/160 (7%)
Query: 151 PRWPLTKKTVTYAFQPGT----RDDIHEPVRVALLLWSNWAPFTFEGSNDYENADIKISF 206
PRW T +TY + T R D+ + A LWSN P TF ++ + ADI ISF
Sbjct: 2 PRWEQTH--LTYRIENYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSEGQ-ADIMISF 58
Query: 207 QRGDHGDGTPFDGPWHTLGHAFSDPYAV---VHFNGDVNWVMGTVKGGFDMQTVALHELG 263
RGDH D +PFDGP L HAF + HF+ D W + +++ VA HELG
Sbjct: 59 VRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWTNNFRE--YNLHRVAAHELG 116
Query: 264 HVLGLSHSSVKAASMWPSTRAGTTKGLNDDDIRRMKMLYG 303
H LGLSHS+ A M+PS L DDI ++ +YG
Sbjct: 117 HSLGLSHSTDIGALMYPSYTFSGDVQLAQDDIDGIQAIYG 156
>pdb|2CLT|A Chain A, Crystal Structure Of The Active Form (Full-Length) Of
Human Fibroblast Collagenase.
pdb|2CLT|B Chain B, Crystal Structure Of The Active Form (Full-Length) Of
Human Fibroblast Collagenase.
pdb|4AUO|A Chain A, Crystal Structure Of Mmp-1(E200a) In Complex With A
Triple- Helical Collagen Peptide
pdb|4AUO|B Chain B, Crystal Structure Of Mmp-1(E200a) In Complex With A
Triple- Helical Collagen Peptide
Length = 367
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 83/161 (51%), Gaps = 12/161 (7%)
Query: 151 PRWPLTKKTVTYAFQPGT----RDDIHEPVRVALLLWSNWAPFTFEGSNDYENADIKISF 206
PRW T +TY + T R D+ + A LWSN P TF ++ + ADI ISF
Sbjct: 8 PRWEQTH--LTYRIENYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSEGQ-ADIMISF 64
Query: 207 QRGDHGDGTPFDGPWHTLGHAFSDPYAV---VHFNGDVNWVMGTVKGGFDMQTVALHELG 263
RGDH D +PFDGP L HAF + HF+ D W + +++ VA H LG
Sbjct: 65 VRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWTNNFRE--YNLHRVAAHALG 122
Query: 264 HVLGLSHSSVKAASMWPSTRAGTTKGLNDDDIRRMKMLYGR 304
H LGLSHS+ A M+PS L DDI ++ +YGR
Sbjct: 123 HSLGLSHSTDIGALMYPSYTFSGDVQLAQDDIDGIQAIYGR 163
>pdb|1FBL|A Chain A, Structure Of Full-Length Porcine Synovial Collagenase
(Mmp1) Reveals A C-Terminal Domain Containing A
Calcium-Linked, Four-Bladed Beta- Propeller
Length = 370
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/160 (39%), Positives = 85/160 (53%), Gaps = 12/160 (7%)
Query: 151 PRWPLTKKTVTYAFQPGT----RDDIHEPVRVALLLWSNWAPFTFEGSNDYENADIKISF 206
PRW T +TY + T R+D+ + A LWSN +P TF ++ + ADI ISF
Sbjct: 8 PRWENTH--LTYRIENYTPDLSREDVDRAIEKAFQLWSNVSPLTFTKVSEGQ-ADIMISF 64
Query: 207 QRGDHGDGTPFDGPWHTLGHAFSDPYAV---VHFNGDVNWVMGTVKGGFDMQTVALHELG 263
RGDH D +PFDGP L HAF + HF+ D W +++ VA HELG
Sbjct: 65 VRGDHRDNSPFDGPGGNLAHAFQPGPGIGGDAHFDEDERWTKNFRD--YNLYRVAAHELG 122
Query: 264 HVLGLSHSSVKAASMWPSTRAGTTKGLNDDDIRRMKMLYG 303
H LGLSHS+ A M+P+ L+ DDI ++ +YG
Sbjct: 123 HSLGLSHSTDIGALMYPNYIYTGDVQLSQDDIDGIQAIYG 162
>pdb|966C|A Chain A, Crystal Structure Of Fibroblast Collagenase-1 Complexed To
A Diphenyl-Ether Sulphone Based Hydroxamic Acid
Length = 157
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/139 (41%), Positives = 75/139 (53%), Gaps = 6/139 (4%)
Query: 169 RDDIHEPVRVALLLWSNWAPFTFEGSNDYENADIKISFQRGDHGDGTPFDGPWHTLGHAF 228
R D+ + A LWSN P TF ++ + ADI ISF RGDH D +PFDGP L HAF
Sbjct: 20 RADVDHAIEKAFQLWSNVTPLTFTKVSEGQ-ADIMISFVRGDHRDNSPFDGPGGNLAHAF 78
Query: 229 SDPYAV---VHFNGDVNWVMGTVKGGFDMQTVALHELGHVLGLSHSSVKAASMWPSTRAG 285
+ HF+ D W + +++ VA HELGH LGLSHS+ A M+PS
Sbjct: 79 QPGPGIGGDAHFDEDERWTNNFRE--YNLHRVAAHELGHSLGLSHSTDIGALMYPSYTFS 136
Query: 286 TTKGLNDDDIRRMKMLYGR 304
L DDI ++ +YGR
Sbjct: 137 GDVQLAQDDIDGIQAIYGR 155
>pdb|1CGL|A Chain A, Structure Of The Catalytic Domain Of Fibroblast
Collagenase Complexed With An Inhibitor
pdb|1CGL|B Chain B, Structure Of The Catalytic Domain Of Fibroblast
Collagenase Complexed With An Inhibitor
Length = 169
Score = 95.5 bits (236), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/162 (40%), Positives = 85/162 (52%), Gaps = 14/162 (8%)
Query: 151 PRWPLTKKTVTYAFQPGT----RDDIHEPVRVALLLWSNWAPFTFEGSNDYENADIKISF 206
PRW T + Y + T R D+ + A LWS+ P TF ++ + ADI ISF
Sbjct: 7 PRWEQTH--LRYRIENYTPDLPRADVDHAIEKAFQLWSDVTPLTFTKVSEGQ-ADIMISF 63
Query: 207 QRGDHGDGTPFDGPWHTLGHAFSDPYAVV----HFNGDVNWVMGTVKGGFDMQTVALHEL 262
RGDH D +PFDGP L HAF DP + HF+ D W + +++ VA HEL
Sbjct: 64 VRGDHRDNSPFDGPGGNLAHAF-DPGPGIGGDAHFDEDERWTNNFRE--YNLHRVAAHEL 120
Query: 263 GHVLGLSHSSVKAASMWPSTRAGTTKGLNDDDIRRMKMLYGR 304
GH LGLSHS+ A M+PS L DDI ++ +YGR
Sbjct: 121 GHSLGLSHSTDIGALMYPSYTFSGDVQLAQDDIDGIQAIYGR 162
>pdb|2XS3|A Chain A, Structure Of Karilysin Catalytic Mmp Domain
pdb|2XS3|B Chain B, Structure Of Karilysin Catalytic Mmp Domain
Length = 166
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 88/166 (53%), Gaps = 15/166 (9%)
Query: 148 FEGPRWPLTKKTVTYAFQPG----TRDDIHEPVRVALLLWSNWAPFTFEGSNDYENADIK 203
+G +W K T+ Y T + +R A LWS+ + +F + ADIK
Sbjct: 3 LQGSKW--NKTTLKYYIYNSSSHLTTTERENAIRSAFALWSDKSTLSFIQVYNPNQADIK 60
Query: 204 ISFQRGDHGDGTPFDGPWHTLGHAFSDPYA------VVHFNGDVNWVMGTVKGGFDMQTV 257
I +++G+HGDG PFDG L HAF P A +HF+ D NW + G D+ TV
Sbjct: 61 IKWEKGNHGDGYPFDGNTGILAHAFYPPPAGGNYAGHLHFDDDENWSIN--GSGIDLITV 118
Query: 258 ALHELGHVLGLSHSSVKAASMWPSTRAGTTKGLNDDDIRRMKMLYG 303
A HE+GH+LG+ HS+V +A M+P G + L++DD + LYG
Sbjct: 119 AAHEIGHLLGIEHSNVSSALMYP-YYTGIKRQLDNDDCLAVWDLYG 163
>pdb|2XS4|A Chain A, Structure Of Karilysin Catalytic Mmp Domain In Complex
With Magnesium
Length = 167
Score = 95.1 bits (235), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 88/166 (53%), Gaps = 15/166 (9%)
Query: 148 FEGPRWPLTKKTVTYAFQPG----TRDDIHEPVRVALLLWSNWAPFTFEGSNDYENADIK 203
+G +W K T+ Y T + +R A LWS+ + +F + ADIK
Sbjct: 3 LQGSKW--NKTTLKYYIYNSSSHLTTTERENAIRSAFALWSDKSTLSFIQVYNPNQADIK 60
Query: 204 ISFQRGDHGDGTPFDGPWHTLGHAFSDPYA------VVHFNGDVNWVMGTVKGGFDMQTV 257
I +++G+HGDG PFDG L HAF P A +HF+ D NW + G D+ TV
Sbjct: 61 IKWEKGNHGDGYPFDGNTGILAHAFYPPPAGGNYAGHLHFDDDENWSIN--GSGIDLITV 118
Query: 258 ALHELGHVLGLSHSSVKAASMWPSTRAGTTKGLNDDDIRRMKMLYG 303
A HE+GH+LG+ HS+V +A M+P G + L++DD + LYG
Sbjct: 119 AAHEIGHLLGIEHSNVSSALMYP-YYTGIKRQLDNDDCLAVWDLYG 163
>pdb|2Y6D|A Chain A, The Discovery Of Mmp7 Inhibitors Exploiting A Novel
Selectivity Trigger
Length = 174
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 85/168 (50%), Gaps = 13/168 (7%)
Query: 147 FFEGPRWPLTKKTVTYAFQPGTRDDIH----EPVRVALLLWSNWAPFTFEGSNDYENADI 202
F P+W T K VTY TRD H V AL +W P F + ADI
Sbjct: 5 FPNSPKW--TSKVVTYRIVSYTRDLPHITVDRLVSKALNMWGKEIPLHFR-KVVWGTADI 61
Query: 203 KISFQRGDHGDGTPFDGPWHTLGHAFSDPYAV---VHFNGDVNWVMGTVKGGFDMQTVAL 259
I F RG HGD PFDGP +TL HAF+ + HF+ D W G+ G + A
Sbjct: 62 MIGFARGAHGDSYPFDGPGNTLAHAFAPGTGLGGDAHFDEDERWTDGSSL-GINFLYAAT 120
Query: 260 HELGHVLGLSHSSVKAASMWPSTRAGTTKG--LNDDDIRRMKMLYGRQ 305
HELGH LG+ HSS A M+P+ G + L+ DDI+ ++ LYG++
Sbjct: 121 HELGHSLGMGHSSDPNAVMYPTYGNGDPQNFKLSQDDIKGIQKLYGKR 168
>pdb|2DDY|A Chain A, Solution Structure Of Matrilysin (Mmp-7) Complexed To
Constraint Conformational Sulfonamide Inhibitor
Length = 173
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 85/168 (50%), Gaps = 13/168 (7%)
Query: 147 FFEGPRWPLTKKTVTYAFQPGTRDDIH----EPVRVALLLWSNWAPFTFEGSNDYENADI 202
F P+W T K VTY TRD H V AL +W P F + ADI
Sbjct: 4 FPNSPKW--TSKVVTYRIVSYTRDLPHITVDRLVSKALNMWGKEIPLHFR-KVVWGTADI 60
Query: 203 KISFQRGDHGDGTPFDGPWHTLGHAFSDPYAV---VHFNGDVNWVMGTVKGGFDMQTVAL 259
I F RG HGD PFDGP +TL HAF+ + HF+ D W G+ G + A
Sbjct: 61 MIGFARGAHGDSYPFDGPGNTLAHAFAPGTGLGGDAHFDEDERWTDGSSL-GINFLYAAT 119
Query: 260 HELGHVLGLSHSSVKAASMWPSTRAGTTKG--LNDDDIRRMKMLYGRQ 305
HELGH LG+ HSS A M+P+ G + L+ DDI+ ++ LYG++
Sbjct: 120 HELGHSLGMGHSSDPNAVMYPTYGNGDPQNFKLSQDDIKGIQKLYGKR 167
>pdb|1MMP|A Chain A, Matrilysin Complexed With Carboxylate Inhibitor
pdb|1MMP|B Chain B, Matrilysin Complexed With Carboxylate Inhibitor
pdb|1MMQ|A Chain A, Matrilysin Complexed With Hydroxamate Inhibitor
pdb|1MMR|A Chain A, Matrilysin Complexed With Sulfodiimine Inhibitor
Length = 170
Score = 94.4 bits (233), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 85/168 (50%), Gaps = 13/168 (7%)
Query: 147 FFEGPRWPLTKKTVTYAFQPGTRDDIH----EPVRVALLLWSNWAPFTFEGSNDYENADI 202
F P+W T K VTY TRD H V AL +W P F + ADI
Sbjct: 4 FPNSPKW--TSKVVTYRIVSYTRDLPHITVDRLVSKALNMWGKEIPLHFR-KVVWGTADI 60
Query: 203 KISFQRGDHGDGTPFDGPWHTLGHAFSDPYAV---VHFNGDVNWVMGTVKGGFDMQTVAL 259
I F RG HGD PFDGP +TL HAF+ + HF+ D W G+ G + A
Sbjct: 61 MIGFARGAHGDSYPFDGPGNTLAHAFAPGTGLGGDAHFDEDERWTDGSSL-GINFLYAAT 119
Query: 260 HELGHVLGLSHSSVKAASMWPSTRAGTTKG--LNDDDIRRMKMLYGRQ 305
HELGH LG+ HSS A M+P+ G + L+ DDI+ ++ LYG++
Sbjct: 120 HELGHSLGMGHSSDPNAVMYPTYGNGDPQNFKLSQDDIKGIQKLYGKR 167
>pdb|1MNC|A Chain A, Structure Of Human Neutrophil Collagenase Reveals Large
S1' Specificity Pocket
Length = 163
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 84/162 (51%), Gaps = 12/162 (7%)
Query: 150 GPRWP---LTKKTVTYAFQPGTRDDIHEPVRVALLLWSNWAPFTFEGSNDYENADIKISF 206
GP+W LT + Y Q + ++ ++ A LWS +P F G + E ADI I+F
Sbjct: 5 GPKWERTNLTYRIRNYTPQL-SEAEVERAIKDAFELWSVASPLIFTGISQGE-ADINIAF 62
Query: 207 QRGDHGDGTPFDGPWHTLGHAFSDPYAV---VHFNGDVNWVMGTVKGGFDMQTVALHELG 263
+ DHGDG+PFDGP L HAF + HF+ + W +++ VA HE G
Sbjct: 63 YQRDHGDGSPFDGPNGILAHAFQPGQGIGGDAHFDAEETWT--NTSANYNLFLVAAHEFG 120
Query: 264 HVLGLSHSSVKAASMWP--STRAGTTKGLNDDDIRRMKMLYG 303
H LGL+HSS A M+P + R + L DDI ++ +YG
Sbjct: 121 HSLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAIYG 162
>pdb|1HV5|A Chain A, Crystal Structure Of The Stromelysin-3 (Mmp-11) Catalytic
Domain Complexed With A Phosphinic Inhibitor
pdb|1HV5|B Chain B, Crystal Structure Of The Stromelysin-3 (Mmp-11) Catalytic
Domain Complexed With A Phosphinic Inhibitor
pdb|1HV5|C Chain C, Crystal Structure Of The Stromelysin-3 (Mmp-11) Catalytic
Domain Complexed With A Phosphinic Inhibitor
pdb|1HV5|D Chain D, Crystal Structure Of The Stromelysin-3 (Mmp-11) Catalytic
Domain Complexed With A Phosphinic Inhibitor
pdb|1HV5|E Chain E, Crystal Structure Of The Stromelysin-3 (Mmp-11) Catalytic
Domain Complexed With A Phosphinic Inhibitor
pdb|1HV5|F Chain F, Crystal Structure Of The Stromelysin-3 (Mmp-11) Catalytic
Domain Complexed With A Phosphinic Inhibitor
Length = 165
Score = 91.7 bits (226), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 83/161 (51%), Gaps = 9/161 (5%)
Query: 150 GPRWP---LTKKTVTYAFQPGTRDDIHEPVRVALLLWSNWAPFTFEGSNDYENADIKISF 206
G RW LT + + + +Q R+ + + V AL +WS P TF ++ ADI I F
Sbjct: 6 GGRWEKTDLTYRILRFPWQL-VREQVRQTVAEALQVWSEVTPLTFTEVHE-GRADIMIDF 63
Query: 207 QRGDHGDGTPFDGPWHTLGHAF---SDPYAVVHFNGDVNWVMGTVKGGFDMQTVALHELG 263
R HGD PFDGP L HAF + VHF+ D W +G +G D+ VA HE G
Sbjct: 64 ARYWHGDNLPFDGPGGILAHAFFPKTHREGDVHFDYDETWTIGDNQGT-DLLQVAAHEFG 122
Query: 264 HVLGLSHSSVKAASMWPSTRAGTTKGLNDDDIRRMKMLYGR 304
HVLGL H++ A M P L+ DD R ++ LYGR
Sbjct: 123 HVLGLQHTTAAKALMSPFYTFRYPLSLSPDDRRGIQHLYGR 163
>pdb|2Y6C|A Chain A, The Discovery Of Mmp7 Inhibitors Exploiting A Novel
Selectivity Trigger
Length = 165
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/165 (39%), Positives = 82/165 (49%), Gaps = 13/165 (7%)
Query: 147 FFEGPRWPLTKKTVTYAFQPGTRDDIH----EPVRVALLLWSNWAPFTFEGSNDYENADI 202
F P+W T K VTY TRD H V AL +W P F + ADI
Sbjct: 5 FPNSPKW--TSKVVTYRIVSYTRDLPHITVDRLVSKALNMWGKEIPLHFR-KVVWGTADI 61
Query: 203 KISFQRGDHGDGTPFDGPWHTLGHAFSDPYAV---VHFNGDVNWVMGTVKGGFDMQTVAL 259
I F RG HGD PFDGP +TL HAF+ + HF+ D W G+ G + A
Sbjct: 62 MIGFARGAHGDSYPFDGPGNTLAHAFAPGTGLGGDAHFDEDERWTDGSSL-GINFLYAAT 120
Query: 260 HELGHVLGLSHSSVKAASMWPSTRAGTTKG--LNDDDIRRMKMLY 302
HELGH LG+ HSS A M+P+ G + L+ DDI+ ++ LY
Sbjct: 121 HELGHSLGMGHSSDPNAVMYPTYGNGDPQNFKLSQDDIKGIQKLY 165
>pdb|3BA0|A Chain A, Crystal Structure Of Full-Length Human Mmp-12
Length = 365
Score = 87.4 bits (215), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 81/163 (49%), Gaps = 14/163 (8%)
Query: 150 GPRWPLTKKTVTYAFQPGT----RDDIHEPVRVALLLWSNWAPFTFEGSNDYENADIKIS 205
GP W K +TY T R+D+ +R A +WSN P F N ADI +
Sbjct: 1 GPVW--RKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINT-GMADILVV 57
Query: 206 FQRGDHGDGTPFDGPWHTLGHAFSDPYAV---VHFNGDVNWVMGTVKGGFDMQTVALHEL 262
F RG HGD FDG L HAF + HF+ D W T GG ++ A+HE+
Sbjct: 58 FARGAHGDDHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWT--THSGGTNLFLTAVHEI 115
Query: 263 GHVLGLSHSSVKAASMWPSTRAG--TTKGLNDDDIRRMKMLYG 303
GH LGL HSS A M+P+ + T L+ DDIR ++ LYG
Sbjct: 116 GHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYG 158
>pdb|1OS2|A Chain A, Ternary Enzyme-Product-Inhibitor Complexes Of Human Mmp12
pdb|1OS2|B Chain B, Ternary Enzyme-Product-Inhibitor Complexes Of Human Mmp12
pdb|1OS2|C Chain C, Ternary Enzyme-Product-Inhibitor Complexes Of Human Mmp12
pdb|1OS2|D Chain D, Ternary Enzyme-Product-Inhibitor Complexes Of Human Mmp12
pdb|1OS2|E Chain E, Ternary Enzyme-Product-Inhibitor Complexes Of Human Mmp12
pdb|1OS2|F Chain F, Ternary Enzyme-Product-Inhibitor Complexes Of Human Mmp12
pdb|1OS9|A Chain A, Binary Enzyme-Product Complexes Of Human Mmp12
pdb|1OS9|B Chain B, Binary Enzyme-Product Complexes Of Human Mmp12
pdb|1OS9|C Chain C, Binary Enzyme-Product Complexes Of Human Mmp12
pdb|1OS9|D Chain D, Binary Enzyme-Product Complexes Of Human Mmp12
pdb|1OS9|E Chain E, Binary Enzyme-Product Complexes Of Human Mmp12
pdb|1OS9|F Chain F, Binary Enzyme-Product Complexes Of Human Mmp12
Length = 165
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 81/163 (49%), Gaps = 14/163 (8%)
Query: 150 GPRWPLTKKTVTYAFQPGT----RDDIHEPVRVALLLWSNWAPFTFEGSNDYENADIKIS 205
GP W K +TY T R+D+ +R A +WSN P F N ADI +
Sbjct: 3 GPVW--RKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINT-GMADILVV 59
Query: 206 FQRGDHGDGTPFDGPWHTLGHAFSDPYAV---VHFNGDVNWVMGTVKGGFDMQTVALHEL 262
F RG HGD FDG L HAF + HF+ D W T GG ++ A+HE+
Sbjct: 60 FARGAHGDDHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWT--THSGGTNLFLTAVHEI 117
Query: 263 GHVLGLSHSSVKAASMWPSTRAG--TTKGLNDDDIRRMKMLYG 303
GH LGL HSS A M+P+ + T L+ DDIR ++ LYG
Sbjct: 118 GHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYG 160
>pdb|3F15|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
(S)-N-(2,3-Dihydroxypropyl)-4-
Methoxy-N-(2-Nitroso-2-Oxoethyl)benzenesulfonamide
pdb|3F16|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
(R)-N-(3-Hydroxy-1-Nitroso-1-
Oxopropan-2-Yl)-4-Methoxybenzenesulfonamide
pdb|3F17|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor N-(2-Nitroso-2-Oxoethyl)
Biphenyl-4-Sulfonamide
pdb|3F18|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
4-Fluoro-N-(2-Hydroxyethyl)-N-
(2-Nitroso-2-Oxoethyl)benzenesulfonamide
pdb|3F19|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor 4-Fluoro-N-(2-Nitroso-2-
Oxoethyl)benzenesulfonamide
pdb|3F1A|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor N-(2-Nitroso-2-Oxoethyl)
Benzenesulfonamide
pdb|3EHX|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor (R)-2-(Biphenyl-4-
Ylsulfonamido)-4-Methylpentanoic Acid
pdb|3EHY|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor (R)-2-(4-
Methoxyphenylsulfonamido)propanoic Acid
pdb|3LKA|A Chain A, Catalytic Domain Of Human Mmp-12 Complexed With Hydroxamic
Acid And Paramethoxy-Sulfonyl Amide
pdb|3NX7|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
N-Hydroxy-2-(N-(2-Hydroxyethyl)4-
Methoxyphenylsulfonamido)acetamide
pdb|3LK8|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
Paramethoxy-Sulfonyl-Glycine Hydroxamate
pdb|3N2U|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
N-Hydroxy-2-(4-Methoxy-N(2-(3,4,5-Trihydroxy-6-
(Hydroxymethyl)tetrahydro-2h-Pyran-2-
Yloxy)ethyl)phenylsulfonamido) Acetamide
pdb|3N2V|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor
N-Hydroxy-2-(N-Hydroxyethyl)biphenyl-4-
Ylsulfonamido)acetamide
pdb|3RTS|A Chain A, Human Mmp-12 Catalytic Domain In Complex
WithN-Hydroxy-2-(2- Phenylethylsulfonamido)acetamide
pdb|3RTT|A Chain A, Human Mmp-12 Catalytic Domain In Complex
With(R)-N-Hydroxy-1-
(Phenethylsulfonyl)pyrrolidine-2-Carboxamide
pdb|4GUY|A Chain A, Human Mmp12 Catalytic Domain In Complex
WithN-Hydroxy-2-(2-(4-
Methoxyphenyl)ethylsulfonamido)acetamide
Length = 158
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 81/163 (49%), Gaps = 14/163 (8%)
Query: 150 GPRWPLTKKTVTYAFQPGT----RDDIHEPVRVALLLWSNWAPFTFEGSNDYENADIKIS 205
GP W K +TY T R+D+ +R A +WSN P F N ADI +
Sbjct: 1 GPVW--RKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINT-GMADILVV 57
Query: 206 FQRGDHGDGTPFDGPWHTLGHAFSDPYAV---VHFNGDVNWVMGTVKGGFDMQTVALHEL 262
F RG HGD FDG L HAF + HF+ D W T GG ++ A+HE+
Sbjct: 58 FARGAHGDDHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWT--THSGGTNLFLTAVHEI 115
Query: 263 GHVLGLSHSSVKAASMWPSTRAG--TTKGLNDDDIRRMKMLYG 303
GH LGL HSS A M+P+ + T L+ DDIR ++ LYG
Sbjct: 116 GHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYG 158
>pdb|1RMZ|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With The Inhibitor Nngh At 1.3 A Resolution
pdb|2HU6|A Chain A, Crystal Structure Of Human Mmp-12 In Complex With
Acetohydroxamic Acid And A Bicyclic Inhibitor
pdb|2OXU|A Chain A, Uninhibited Form Of Human Mmp-12
pdb|2OXW|A Chain A, Human Mmp-12 Complexed With The Peptide Iag
pdb|2OXZ|A Chain A, Human Mmp-12 In Complex With Two Peptides Pqg And Iag
pdb|1YCM|A Chain A, Solution Structure Of Matrix Metalloproteinase 12 (Mmp12)
In The Presence Of N-Isobutyl-N-[4-
Methoxyphenylsulfonyl]glycyl Hydroxamic Acid (Nngh)
pdb|1Z3J|A Chain A, Solution Structure Of Mmp12 In The Presence Of
N-Isobutyl-N- 4-Methoxyphenylsulfonyl]glycyl Hydroxamic
Acid (Nngh)
pdb|1Y93|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
Complexed With Acetohydroxamic Acid At Atomic Resolution
pdb|3LIK|A Chain A, Human Mmp12 In Complex With Non-Zinc Chelating Inhibitor
pdb|3LIL|A Chain A, Human Mmp12 In Complex With Non-Zinc Chelating Inhibitor
pdb|3LIR|A Chain A, Human Mmp12 In Complex With Non-Zinc Chelating Inhibitor
pdb|3LJG|A Chain A, Human Mmp12 In Complex With Non-Zinc Chelating Inhibitor
pdb|3TS4|A Chain A, Human Mmp12 In Complex With L-Glutamate Motif Inhibitor
pdb|3TSK|A Chain A, Human Mmp12 In Complex With L-Glutamate Motif Inhibitor
pdb|4EFS|A Chain A, Human Mmp12 In Complex With L-Glutamate Motif Inhibitor
pdb|4GQL|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
In Complex With Selective Phosphinic Inhibitor Rxp470.1
pdb|4GR0|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
In Complex With Selective Phosphinic Inhibitor Rxp470b
pdb|4GR3|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
In Complex With Selective Phosphinic Inhibitor Rxp470a
Length = 159
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 81/163 (49%), Gaps = 14/163 (8%)
Query: 150 GPRWPLTKKTVTYAFQPGT----RDDIHEPVRVALLLWSNWAPFTFEGSNDYENADIKIS 205
GP W K +TY T R+D+ +R A +WSN P F N ADI +
Sbjct: 2 GPVW--RKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINT-GMADILVV 58
Query: 206 FQRGDHGDGTPFDGPWHTLGHAFSDPYAV---VHFNGDVNWVMGTVKGGFDMQTVALHEL 262
F RG HGD FDG L HAF + HF+ D W T GG ++ A+HE+
Sbjct: 59 FARGAHGDDHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWT--THSGGTNLFLTAVHEI 116
Query: 263 GHVLGLSHSSVKAASMWPSTRAG--TTKGLNDDDIRRMKMLYG 303
GH LGL HSS A M+P+ + T L+ DDIR ++ LYG
Sbjct: 117 GHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYG 159
>pdb|2WO8|A Chain A, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO8|B Chain B, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO8|C Chain C, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO8|D Chain D, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO9|A Chain A, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO9|B Chain B, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO9|C Chain C, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WO9|D Chain D, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WOA|A Chain A, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WOA|B Chain B, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WOA|C Chain C, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
pdb|2WOA|D Chain D, Mmp12 Complex With A Beta Hydroxy Carboxylic Acid
Length = 164
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 81/163 (49%), Gaps = 14/163 (8%)
Query: 150 GPRWPLTKKTVTYAFQPGT----RDDIHEPVRVALLLWSNWAPFTFEGSNDYENADIKIS 205
GP W K +TY T R+D+ +R A +WSN P F N ADI +
Sbjct: 2 GPVW--RKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINT-GMADILVV 58
Query: 206 FQRGDHGDGTPFDGPWHTLGHAFSDPYAV---VHFNGDVNWVMGTVKGGFDMQTVALHEL 262
F RG HGD FDG L HAF + HF+ D W T GG ++ A+HE+
Sbjct: 59 FARGAHGDFHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWT--THSGGTNLFLTAVHEI 116
Query: 263 GHVLGLSHSSVKAASMWPSTRAG--TTKGLNDDDIRRMKMLYG 303
GH LGL HSS A M+P+ + T L+ DDIR ++ LYG
Sbjct: 117 GHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYG 159
>pdb|1ROS|A Chain A, Crystal Structure Of Mmp-12 Complexed To 2-(1,3-Dioxo-1,3-
Dihydro-2h-Isoindol-2-Yl)ethyl-4-(4-Ethoxy[1,
1-Biphenyl]-4- Yl)-4-Oxobutanoic Acid
pdb|1ROS|B Chain B, Crystal Structure Of Mmp-12 Complexed To 2-(1,3-Dioxo-1,3-
Dihydro-2h-Isoindol-2-Yl)ethyl-4-(4-Ethoxy[1,
1-Biphenyl]-4- Yl)-4-Oxobutanoic Acid
Length = 163
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 81/163 (49%), Gaps = 14/163 (8%)
Query: 150 GPRWPLTKKTVTYAFQPGT----RDDIHEPVRVALLLWSNWAPFTFEGSNDYENADIKIS 205
GP W K +TY T R+D+ +R A +WSN P F N ADI +
Sbjct: 1 GPVW--RKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINT-GMADILVV 57
Query: 206 FQRGDHGDGTPFDGPWHTLGHAFSDPYAV---VHFNGDVNWVMGTVKGGFDMQTVALHEL 262
F RG HGD FDG L HAF + HF+ D W T GG ++ A+HE+
Sbjct: 58 FARGAHGDFHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWT--THSGGTNLFLTAVHEI 115
Query: 263 GHVLGLSHSSVKAASMWPSTRAG--TTKGLNDDDIRRMKMLYG 303
GH LGL HSS A M+P+ + T L+ DDIR ++ LYG
Sbjct: 116 GHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYG 158
>pdb|2K2G|A Chain A, Solution Structure Of The Wild-Type Catalytic Domain Of
Human Matrix Metalloproteinase 12 (Mmp-12) In Complex
With A Tight-Binding Inhibitor
Length = 165
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 81/163 (49%), Gaps = 14/163 (8%)
Query: 150 GPRWPLTKKTVTYAFQPGT----RDDIHEPVRVALLLWSNWAPFTFEGSNDYENADIKIS 205
GP W K +TY T R+D+ +R A +WSN P F N ADI +
Sbjct: 8 GPVW--RKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINT-GMADILVV 64
Query: 206 FQRGDHGDGTPFDGPWHTLGHAFSDPYAV---VHFNGDVNWVMGTVKGGFDMQTVALHEL 262
F RG HGD FDG L HAF + HF+ D W T GG ++ A+HE+
Sbjct: 65 FARGAHGDFHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWT--THSGGTNLFLTAVHEI 122
Query: 263 GHVLGLSHSSVKAASMWPSTRAG--TTKGLNDDDIRRMKMLYG 303
GH LGL HSS A M+P+ + T L+ DDIR ++ LYG
Sbjct: 123 GHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYG 165
>pdb|2Z2D|A Chain A, Solution Structure Of Human Macrophage Elastase (Mmp-12)
Catalytic Domain Complexed With A Gamma-Keto Butanoic
Acid Inhibitor
Length = 164
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 81/163 (49%), Gaps = 14/163 (8%)
Query: 150 GPRWPLTKKTVTYAFQPGT----RDDIHEPVRVALLLWSNWAPFTFEGSNDYENADIKIS 205
GP W K +TY T R+D+ +R A +WSN P F N ADI +
Sbjct: 7 GPVW--RKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINT-GMADILVV 63
Query: 206 FQRGDHGDGTPFDGPWHTLGHAFSDPYAV---VHFNGDVNWVMGTVKGGFDMQTVALHEL 262
F RG HGD FDG L HAF + HF+ D W T GG ++ A+HE+
Sbjct: 64 FARGAHGDFHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWT--THSGGTNLFLTAVHEI 121
Query: 263 GHVLGLSHSSVKAASMWPSTRAG--TTKGLNDDDIRRMKMLYG 303
GH LGL HSS A M+P+ + T L+ DDIR ++ LYG
Sbjct: 122 GHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYG 164
>pdb|1A86|A Chain A, Mmp8 With Malonic And Aspartic Acid Based Inhibitor
pdb|1JH1|A Chain A, Crystal Structure Of Mmp-8 Complexed With A 6h-1,3,4-
Thiadiazine Derived Inhibitor
pdb|2OY2|A Chain A, Human Mmp-8 In Complex With Peptide Iag
pdb|2OY2|F Chain F, Human Mmp-8 In Complex With Peptide Iag
pdb|2OY4|A Chain A, Uninhibited Human Mmp-8
pdb|2OY4|F Chain F, Uninhibited Human Mmp-8
pdb|1A85|A Chain A, Mmp8 With Malonic And Asparagine Based Inhibitor
Length = 158
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 81/161 (50%), Gaps = 12/161 (7%)
Query: 151 PRWP---LTKKTVTYAFQPGTRDDIHEPVRVALLLWSNWAPFTFEGSNDYENADIKISFQ 207
P+W LT + Y Q + ++ ++ A LWS +P F + E ADI I+F
Sbjct: 2 PKWERTNLTYRIRNYTPQL-SEAEVERAIKDAFELWSVASPLIFTRISQGE-ADINIAFY 59
Query: 208 RGDHGDGTPFDGPWHTLGHAFSDPYAV---VHFNGDVNWVMGTVKGGFDMQTVALHELGH 264
+ DHGD +PFDGP L HAF + HF+ + W +++ VA HE GH
Sbjct: 60 QRDHGDNSPFDGPNGILAHAFQPGQGIGGDAHFDAEETWT--NTSANYNLFLVAAHEFGH 117
Query: 265 VLGLSHSSVKAASMWP--STRAGTTKGLNDDDIRRMKMLYG 303
LGL+HSS A M+P + R + L DDI ++ +YG
Sbjct: 118 SLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAIYG 158
>pdb|1UTT|A Chain A, Crystal Structure Of Mmp-12 Complexed To 2-
(1,3-Dioxo-1,3-Dihydro-2h-Isoindol-2-Yl)ethyl-4-
(4-Ethoxy[1,1-Biphenyl]-4-Yl)-4-Oxobutanoic Acid
pdb|1UTZ|A Chain A, Crystal Structure Of Mmp-12 Complexed To
(2r)-3-({[4-[(Pyri
Din-4-Yl)phenyl]-Thien-2-
Yl}carboxamido)(Phenyl)propanoic Acid
pdb|1UTZ|B Chain B, Crystal Structure Of Mmp-12 Complexed To
(2r)-3-({[4-[(Pyri
Din-4-Yl)phenyl]-Thien-2-
Yl}carboxamido)(Phenyl)propanoic Acid
Length = 159
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 81/163 (49%), Gaps = 14/163 (8%)
Query: 150 GPRWPLTKKTVTYAFQPGT----RDDIHEPVRVALLLWSNWAPFTFEGSNDYENADIKIS 205
GP W K +TY T R+D+ +R A +WSN P F N ADI +
Sbjct: 1 GPVW--RKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINT-GMADILVV 57
Query: 206 FQRGDHGDGTPFDGPWHTLGHAFSDPYAV---VHFNGDVNWVMGTVKGGFDMQTVALHEL 262
F RG HGD FDG L HAF + HF+ D W T GG ++ A+HE+
Sbjct: 58 FARGAHGDFHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWT--THSGGTNLFLTAVHEI 115
Query: 263 GHVLGLSHSSVKAASMWPSTRAG--TTKGLNDDDIRRMKMLYG 303
GH LGL HSS A M+P+ + T L+ DDIR ++ LYG
Sbjct: 116 GHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYG 158
>pdb|1JIZ|A Chain A, Crystal Structure Analysis Of Human Macrophage Elastase
Mmp- 12
pdb|1JIZ|B Chain B, Crystal Structure Analysis Of Human Macrophage Elastase
Mmp- 12
Length = 166
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 81/163 (49%), Gaps = 14/163 (8%)
Query: 150 GPRWPLTKKTVTYAFQPGT----RDDIHEPVRVALLLWSNWAPFTFEGSNDYENADIKIS 205
GP W K +TY T R+D+ +R A +WSN P F N ADI +
Sbjct: 8 GPVW--RKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINT-GMADILVV 64
Query: 206 FQRGDHGDGTPFDGPWHTLGHAFSDPYAV---VHFNGDVNWVMGTVKGGFDMQTVALHEL 262
F RG HGD FDG L HAF + HF+ D W T GG ++ A+HE+
Sbjct: 65 FARGAHGDFHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWT--THSGGTNLFLTAVHEI 122
Query: 263 GHVLGLSHSSVKAASMWPSTRAG--TTKGLNDDDIRRMKMLYG 303
GH LGL HSS A M+P+ + T L+ DDIR ++ LYG
Sbjct: 123 GHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYG 165
>pdb|3TT4|A Chain A, Human Mmp8 In Complex With L-Glutamate Motif Inhibitor
Length = 159
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 81/161 (50%), Gaps = 12/161 (7%)
Query: 151 PRWP---LTKKTVTYAFQPGTRDDIHEPVRVALLLWSNWAPFTFEGSNDYENADIKISFQ 207
P+W LT + Y Q + ++ ++ A LWS +P F + E ADI I+F
Sbjct: 3 PKWERTNLTYRIRNYTPQL-SEAEVERAIKDAFELWSVASPLIFTRISQGE-ADINIAFY 60
Query: 208 RGDHGDGTPFDGPWHTLGHAFSDPYAV---VHFNGDVNWVMGTVKGGFDMQTVALHELGH 264
+ DHGD +PFDGP L HAF + HF+ + W +++ VA HE GH
Sbjct: 61 QRDHGDNSPFDGPNGILAHAFQPGQGIGGDAHFDAEETWT--NTSANYNLFLVAAHEFGH 118
Query: 265 VLGLSHSSVKAASMWP--STRAGTTKGLNDDDIRRMKMLYG 303
LGL+HSS A M+P + R + L DDI ++ +YG
Sbjct: 119 SLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAIYG 159
>pdb|1JAQ|A Chain A, Complex Of 1-Hydroxylamine-2-Isobutylmalonyl-Ala-Gly-Nh2
With The Catalytic Domain Of Matrix Metallo Proteinase-8
(Met80 Form)
pdb|1JAP|A Chain A, Complex Of Pro-Leu-Gly-Hydroxylamine With The Catalytic
Domain Of Matrix Metallo Proteinase-8 (Met80 Form)
pdb|1JAO|A Chain A, Complex Of 3-Mercapto-2-Benzylpropanoyl-Ala-Gly-Nh2 With
The Catalytic Domain Of Matrix Metallo Proteinase-8
(Met80 Form)
pdb|1I73|A Chain A, Complex Of Pro-Leu-L-Trp Phosphonate With The Catalitic
Domain Of Matrix Metallo Proteinase-8 (Met80 Form)
pdb|1I76|A Chain A, Complex Of 2-(Biphenyl-4-Sulfonyl)-1,2,3,4-Tetrahydro-
Isoquinoline-3-Carboxylic Acid (D-Tic Derivative) With T
Catalitic Domain Of Matrix Metallo Proteinase-8 (Met80
Form)
pdb|1JJ9|A Chain A, Crystal Structure Of Mmp8-Barbiturate Complex Reveals
Mechanism For Collagen Substrate Recognition
pdb|1ZP5|A Chain A, Crystal Structure Of The Complex Between Mmp-8 And A N-
Hydroxyurea Inhibitor
pdb|1ZS0|A Chain A, Crystal Structure Of The Complex Between Mmp-8 And A
Phosphonate Inhibitor (s-enantiomer)
pdb|1ZVX|A Chain A, Crystal Structure Of The Complex Between Mmp-8 And A
Phosphonate Inhibitor (r-enantiomer)
pdb|1MMB|A Chain A, Complex Of Bb94 With The Catalytic Domain Of Matrix
Metalloproteinase-8
pdb|3DNG|A Chain A, Crystal Structure Of The Complex Between Mmp-8 And A Non-
Zinc Chelating Inhibitor
pdb|3DNG|B Chain B, Crystal Structure Of The Complex Between Mmp-8 And A Non-
Zinc Chelating Inhibitor
pdb|3DPE|A Chain A, Crystal Structure Of The Complex Between Mmp-8 And A Non-
Zinc Chelating Inhibitor
pdb|3DPF|A Chain A, Crystal Structure Of The Complex Between Mmp-8 And A Non-
Zinc Chelating Inhibitor
pdb|3DPF|B Chain B, Crystal Structure Of The Complex Between Mmp-8 And A Non-
Zinc Chelating Inhibitor
Length = 163
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 81/161 (50%), Gaps = 12/161 (7%)
Query: 151 PRWP---LTKKTVTYAFQPGTRDDIHEPVRVALLLWSNWAPFTFEGSNDYENADIKISFQ 207
P+W LT + Y Q + ++ ++ A LWS +P F + E ADI I+F
Sbjct: 7 PKWERTNLTYRIRNYTPQL-SEAEVERAIKDAFELWSVASPLIFTRISQGE-ADINIAFY 64
Query: 208 RGDHGDGTPFDGPWHTLGHAFSDPYAV---VHFNGDVNWVMGTVKGGFDMQTVALHELGH 264
+ DHGD +PFDGP L HAF + HF+ + W +++ VA HE GH
Sbjct: 65 QRDHGDNSPFDGPNGILAHAFQPGQGIGGDAHFDAEETWT--NTSANYNLFLVAAHEFGH 122
Query: 265 VLGLSHSSVKAASMWP--STRAGTTKGLNDDDIRRMKMLYG 303
LGL+HSS A M+P + R + L DDI ++ +YG
Sbjct: 123 SLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAIYG 163
>pdb|1KBC|A Chain A, Procarboxypeptidase Ternary Complex
pdb|1KBC|B Chain B, Procarboxypeptidase Ternary Complex
pdb|1JAN|A Chain A, Complex Of Pro-Leu-Gly-Hydroxylamine With The Catalytic
Domain Of Matrix Metallo Proteinase-8 (Phe79 Form)
Length = 164
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 81/161 (50%), Gaps = 12/161 (7%)
Query: 151 PRWP---LTKKTVTYAFQPGTRDDIHEPVRVALLLWSNWAPFTFEGSNDYENADIKISFQ 207
P+W LT + Y Q + ++ ++ A LWS +P F + E ADI I+F
Sbjct: 8 PKWERTNLTYRIRNYTPQL-SEAEVERAIKDAFELWSVASPLIFTRISQGE-ADINIAFY 65
Query: 208 RGDHGDGTPFDGPWHTLGHAFSDPYAV---VHFNGDVNWVMGTVKGGFDMQTVALHELGH 264
+ DHGD +PFDGP L HAF + HF+ + W +++ VA HE GH
Sbjct: 66 QRDHGDNSPFDGPNGILAHAFQPGQGIGGDAHFDAEETWT--NTSANYNLFLVAAHEFGH 123
Query: 265 VLGLSHSSVKAASMWP--STRAGTTKGLNDDDIRRMKMLYG 303
LGL+HSS A M+P + R + L DDI ++ +YG
Sbjct: 124 SLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAIYG 164
>pdb|1BZS|A Chain A, Crystal Structure Of Mmp8 Complexed With Hmr2909
Length = 165
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 81/161 (50%), Gaps = 12/161 (7%)
Query: 151 PRWP---LTKKTVTYAFQPGTRDDIHEPVRVALLLWSNWAPFTFEGSNDYENADIKISFQ 207
P+W LT + Y Q + ++ ++ A LWS +P F + E ADI I+F
Sbjct: 8 PKWERTNLTYRIRNYTPQL-SEAEVERAIKDAFELWSVASPLIFTRISQGE-ADINIAFY 65
Query: 208 RGDHGDGTPFDGPWHTLGHAFSDPYAV---VHFNGDVNWVMGTVKGGFDMQTVALHELGH 264
+ DHGD +PFDGP L HAF + HF+ + W +++ VA HE GH
Sbjct: 66 QRDHGDNSPFDGPNGILAHAFQPGQGIGGDAHFDAEETWT--NTSANYNLFLVAAHEFGH 123
Query: 265 VLGLSHSSVKAASMWP--STRAGTTKGLNDDDIRRMKMLYG 303
LGL+HSS A M+P + R + L DDI ++ +YG
Sbjct: 124 SLGLAHSSDPGALMYPNYAFRETSNYSLPQDDIDGIQAIYG 164
>pdb|1Q3A|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Matrix
Metalloproteinase 10
pdb|1Q3A|B Chain B, Crystal Structure Of The Catalytic Domain Of Human Matrix
Metalloproteinase 10
pdb|1Q3A|C Chain C, Crystal Structure Of The Catalytic Domain Of Human Matrix
Metalloproteinase 10
Length = 165
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 81/163 (49%), Gaps = 15/163 (9%)
Query: 151 PRWP---LTKKTVTYAFQPGTRDDIHEPVRVALLLWSNWAPFTFEGSNDYE-NADIKISF 206
P+W LT + V Y RD + + AL +W P TF S YE ADI ISF
Sbjct: 8 PKWRKTHLTYRIVNYT-PDLPRDAVDSAIEKALKVWEEVTPLTF--SRLYEGEADIMISF 64
Query: 207 QRGDHGDGTPFDGPWHTLGHAFSD---PYAVVHFNGDVNWVMGTVKGGFDMQTVALHELG 263
+HGD FDGP H+L HA+ Y +HF+ D W G ++ VA HELG
Sbjct: 65 AVKEHGDNYSFDGPGHSLAHAYPPGPGLYGDIHFDDDEKWTEDA--SGTNLFLVAAHELG 122
Query: 264 HVLGLSHSSVKAASMWPSTRAGTTKG---LNDDDIRRMKMLYG 303
H LGL HS+ A M+P + T L+ DD+ ++ LYG
Sbjct: 123 HSLGLFHSANTEALMYPLYNSFTELAQFRLSQDDVNGIQSLYG 165
>pdb|3V96|B Chain B, Complex Of Matrix Metalloproteinase-10 Catalytic Domain
(Mmp-10cd) With Tissue Inhibitor Of Metalloproteinases-1
(Timp-1)
Length = 165
Score = 85.1 bits (209), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 81/163 (49%), Gaps = 15/163 (9%)
Query: 151 PRWP---LTKKTVTYAFQPGTRDDIHEPVRVALLLWSNWAPFTFEGSNDYE-NADIKISF 206
P+W LT + V Y RD + + AL +W P TF S YE ADI ISF
Sbjct: 8 PKWRKTHLTYRIVNYT-PDLPRDAVDSAIEKALKVWEEVTPLTF--SRLYEGEADIMISF 64
Query: 207 QRGDHGDGTPFDGPWHTLGHAFSD---PYAVVHFNGDVNWVMGTVKGGFDMQTVALHELG 263
+HGD FDGP H+L HA+ Y +HF+ D W G ++ VA HELG
Sbjct: 65 AVKEHGDFYSFDGPGHSLAHAYPPGPGLYGDIHFDDDEKWTEDA--SGTNLFLVAAHELG 122
Query: 264 HVLGLSHSSVKAASMWPSTRAGTTKG---LNDDDIRRMKMLYG 303
H LGL HS+ A M+P + T L+ DD+ ++ LYG
Sbjct: 123 HSLGLFHSANTEALMYPLYNSFTELAQFRLSQDDVNGIQSLYG 165
>pdb|2K9C|A Chain A, Paramagnetic Shifts In Solid-State Nmr Of Proteins To
Elicit Structural Information
pdb|2KRJ|A Chain A, High-Resolution Solid-State Nmr Structure Of A 17.6 Kda
Prot
Length = 152
Score = 84.7 bits (208), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 73/140 (52%), Gaps = 8/140 (5%)
Query: 169 RDDIHEPVRVALLLWSNWAPFTFEGSNDYENADIKISFQRGDHGDGTPFDGPWHTLGHAF 228
R+D+ +R A +WSN P F N ADI + F RG HGD FDG L HAF
Sbjct: 16 REDVDYAIRKAFQVWSNVTPLKFSKINT-GMADILVVFARGAHGDDHAFDGKGGILAHAF 74
Query: 229 SDPYAV---VHFNGDVNWVMGTVKGGFDMQTVALHELGHVLGLSHSSVKAASMWPSTRAG 285
+ HF+ D W T GG ++ A+HE+GH LGL HSS A M+P+ +
Sbjct: 75 GPGSGIGGDAHFDEDEFWT--THSGGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTYKYV 132
Query: 286 --TTKGLNDDDIRRMKMLYG 303
T L+ DDIR ++ LYG
Sbjct: 133 DINTFRLSADDIRGIQSLYG 152
>pdb|2W0D|A Chain A, Does A Fast Nuclear Magnetic Resonance Spectroscopy- And
X-Ray Crystallography Hybrid Approach Provide Reliable
Structural Information Of Ligand-Protein Complexes? A
Case Study Of Metalloproteinases.
pdb|2W0D|B Chain B, Does A Fast Nuclear Magnetic Resonance Spectroscopy- And
X-Ray Crystallography Hybrid Approach Provide Reliable
Structural Information Of Ligand-Protein Complexes? A
Case Study Of Metalloproteinases.
pdb|2W0D|C Chain C, Does A Fast Nuclear Magnetic Resonance Spectroscopy- And
X-Ray Crystallography Hybrid Approach Provide Reliable
Structural Information Of Ligand-Protein Complexes? A
Case Study Of Metalloproteinases.
pdb|2W0D|D Chain D, Does A Fast Nuclear Magnetic Resonance Spectroscopy- And
X-Ray Crystallography Hybrid Approach Provide Reliable
Structural Information Of Ligand-Protein Complexes? A
Case Study Of Metalloproteinases.
pdb|3UVC|A Chain A, Mmp12 In A Complex With The Dimeric Adduct:
5-(5-Phenylhydantoin)-5- Phenylhydantoin
pdb|3UVC|B Chain B, Mmp12 In A Complex With The Dimeric Adduct:
5-(5-Phenylhydantoin)-5- Phenylhydantoin
Length = 164
Score = 84.3 bits (207), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 80/165 (48%), Gaps = 14/165 (8%)
Query: 150 GPRWPLTKKTVTYAFQPGT----RDDIHEPVRVALLLWSNWAPFTFEGSNDYENADIKIS 205
GP W K +TY T R+D+ +R A +WSN P F N ADI +
Sbjct: 2 GPVW--RKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINT-GMADILVV 58
Query: 206 FQRGDHGDGTPFDGPWHTLGHAFSDPYAV---VHFNGDVNWVMGTVKGGFDMQTVALHEL 262
F RG HGD FDG L HAF + HF+ D W T GG ++ A+H +
Sbjct: 59 FARGAHGDFHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWT--THSGGTNLFLTAVHAI 116
Query: 263 GHVLGLSHSSVKAASMWPSTRAG--TTKGLNDDDIRRMKMLYGRQ 305
GH LGL HSS A M+P+ + T L+ DDIR ++ LYG
Sbjct: 117 GHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYGHH 161
>pdb|1JK3|A Chain A, Crystal Structure Of Human Mmp-12 (Macrophage Elastase) At
True Atomic Resolution
Length = 158
Score = 84.0 bits (206), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 80/163 (49%), Gaps = 14/163 (8%)
Query: 150 GPRWPLTKKTVTYAFQPGT----RDDIHEPVRVALLLWSNWAPFTFEGSNDYENADIKIS 205
GP W K +TY T R+D+ +R A +WSN P F N ADI +
Sbjct: 1 GPVW--RKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINT-GMADILVV 57
Query: 206 FQRGDHGDGTPFDGPWHTLGHAFSDPYAV---VHFNGDVNWVMGTVKGGFDMQTVALHEL 262
F RG HGD FDG L HAF + HF+ D W T GG ++ A+H +
Sbjct: 58 FARGAHGDFHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWT--THSGGTNLFLTAVHAI 115
Query: 263 GHVLGLSHSSVKAASMWPSTRAG--TTKGLNDDDIRRMKMLYG 303
GH LGL HSS A M+P+ + T L+ DDIR ++ LYG
Sbjct: 116 GHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYG 158
>pdb|2POJ|A Chain A, Nmr Solution Structure Of The Inhibitor-Free State Of
Macrophage Metalloelastase (Mmp-12)
Length = 164
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 80/163 (49%), Gaps = 14/163 (8%)
Query: 150 GPRWPLTKKTVTYAFQPGT----RDDIHEPVRVALLLWSNWAPFTFEGSNDYENADIKIS 205
GP W K +TY T R+D+ +R A +WSN P F N ADI +
Sbjct: 7 GPVW--RKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINT-GMADILVV 63
Query: 206 FQRGDHGDGTPFDGPWHTLGHAFSDPYAV---VHFNGDVNWVMGTVKGGFDMQTVALHEL 262
F RG HGD FDG L HAF + HF+ D W T GG ++ A+H +
Sbjct: 64 FARGAHGDFHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWT--THSGGTNLFLTAVHAI 121
Query: 263 GHVLGLSHSSVKAASMWPSTRAG--TTKGLNDDDIRRMKMLYG 303
GH LGL HSS A M+P+ + T L+ DDIR ++ LYG
Sbjct: 122 GHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDIRGIQSLYG 164
>pdb|1HFS|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Fibroblast Stromelysin-1 Inhibited With The
N-Carboxy-Alkyl Inhibitor L-764,004
Length = 160
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 82/163 (50%), Gaps = 15/163 (9%)
Query: 151 PRWP---LTKKTVTYAFQPGTRDDIHEPVRVALLLWSNWAPFTFEGSNDYE-NADIKISF 206
P+W LT + V Y +D + V AL +W P TF S YE ADI ISF
Sbjct: 3 PKWRKTHLTYRIVNYT-PDLPKDAVDSAVEKALKVWEEVTPLTF--SRLYEGEADIMISF 59
Query: 207 QRGDHGDGTPFDGPWHTLGHAFSDPYAV---VHFNGDVNWVMGTVKGGFDMQTVALHELG 263
+HGD PFDGP + L HA++ + HF+ D W T G ++ VA HE+G
Sbjct: 60 AVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWTKDTT--GTNLFLVAAHEIG 117
Query: 264 HVLGLSHSSVKAASMWP---STRAGTTKGLNDDDIRRMKMLYG 303
H LGL HS+ A M+P S T L+ DDI ++ LYG
Sbjct: 118 HSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLYG 160
>pdb|1USN|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Fibroblast Stromelysin-1 Inhibited With Thiadiazole
Inhibitor Pnu-142372
pdb|2USN|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Fibroblast Stromelysin-1 Inhibited With Thiadiazole
Inhibitor Pnu-141803
Length = 165
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 82/163 (50%), Gaps = 15/163 (9%)
Query: 151 PRWP---LTKKTVTYAFQPGTRDDIHEPVRVALLLWSNWAPFTFEGSNDYE-NADIKISF 206
P+W LT + V Y +D + V AL +W P TF S YE ADI ISF
Sbjct: 8 PKWRKTHLTYRIVNYT-PDLPKDAVDSAVEKALKVWEEVTPLTF--SRLYEGEADIMISF 64
Query: 207 QRGDHGDGTPFDGPWHTLGHAFSDPYAV---VHFNGDVNWVMGTVKGGFDMQTVALHELG 263
+HGD PFDGP + L HA++ + HF+ D W T G ++ VA HE+G
Sbjct: 65 AVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWTKDTT--GTNLFLVAAHEIG 122
Query: 264 HVLGLSHSSVKAASMWP---STRAGTTKGLNDDDIRRMKMLYG 303
H LGL HS+ A M+P S T L+ DDI ++ LYG
Sbjct: 123 HSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLYG 165
>pdb|2JNP|A Chain A, Solution Structure Of Matrix Metalloproteinase 3 (Mmp-3)
In The Presence Of N-Isobutyl-N-[4-
Methoxyphenylsulfonyl]glycyl Hydroxamic Acid (Nngh)
pdb|2JT5|A Chain A, Solution Structure Of Matrix Metalloproteinase 3 (mmp-3)
In The Presence Of
N-hydroxy-2-[n-(2-hydroxyethyl)biphenyl-4- Sulfonamide]
Hydroxamic Acid (mlc88)
pdb|2JT6|A Chain A, Solution Structure Of Matrix Metalloproteinase 3 (Mmp-3)
In The Presence Of 3-4'-Cyanobyphenyl-4-Yloxy)-N-
Hdydroxypropionamide (Mmp-3 Inhibitor Vii)
Length = 161
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 82/163 (50%), Gaps = 15/163 (9%)
Query: 151 PRWP---LTKKTVTYAFQPGTRDDIHEPVRVALLLWSNWAPFTFEGSNDYE-NADIKISF 206
P+W LT + V Y +D + V AL +W P TF S YE ADI ISF
Sbjct: 3 PKWRKTHLTYRIVNYT-PDLPKDAVDSAVEKALKVWEEVTPLTF--SRLYEGEADIMISF 59
Query: 207 QRGDHGDGTPFDGPWHTLGHAFSDPYAV---VHFNGDVNWVMGTVKGGFDMQTVALHELG 263
+HGD PFDGP + L HA++ + HF+ D W T G ++ VA HE+G
Sbjct: 60 AVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWTKDTT--GTNLFLVAAHEIG 117
Query: 264 HVLGLSHSSVKAASMWP---STRAGTTKGLNDDDIRRMKMLYG 303
H LGL HS+ A M+P S T L+ DDI ++ LYG
Sbjct: 118 HSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLYG 160
>pdb|4GR8|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Mmp12
In Complex With Selective Phosphinic Inhibitor Rxp470c
Length = 152
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 72/139 (51%), Gaps = 8/139 (5%)
Query: 169 RDDIHEPVRVALLLWSNWAPFTFEGSNDYENADIKISFQRGDHGDGTPFDGPWHTLGHAF 228
R+D+ +R A +WSN P F N ADI + F RG HGD FDG L HAF
Sbjct: 17 REDVDYAIRKAFQVWSNVTPLKFSKINT-GMADILVVFARGAHGDDHAFDGKGGILAHAF 75
Query: 229 SDPYAV---VHFNGDVNWVMGTVKGGFDMQTVALHELGHVLGLSHSSVKAASMWPSTRAG 285
+ HF+ D W T GG ++ A+HE+GH LGL HSS A M+P+ +
Sbjct: 76 GPGSGIGGDAHFDEDEFWT--THSGGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTYKYV 133
Query: 286 --TTKGLNDDDIRRMKMLY 302
T L+ DDIR ++ LY
Sbjct: 134 DINTFRLSADDIRGIQSLY 152
>pdb|1QIC|A Chain A, Crystal Structure Of Stromelysin Catalytic Domain
pdb|1QIC|B Chain B, Crystal Structure Of Stromelysin Catalytic Domain
pdb|1QIC|C Chain C, Crystal Structure Of Stromelysin Catalytic Domain
pdb|1QIC|D Chain D, Crystal Structure Of Stromelysin Catalytic Domain
Length = 161
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 82/163 (50%), Gaps = 15/163 (9%)
Query: 151 PRWP---LTKKTVTYAFQPGTRDDIHEPVRVALLLWSNWAPFTFEGSNDYE-NADIKISF 206
P+W LT + V Y +D + V AL +W P TF S YE ADI ISF
Sbjct: 2 PKWRKTHLTYRIVNYT-PDLPKDAVDSAVEKALKVWEEVTPLTF--SRLYEGEADIMISF 58
Query: 207 QRGDHGDGTPFDGPWHTLGHAFSDPYAV---VHFNGDVNWVMGTVKGGFDMQTVALHELG 263
+HGD PFDGP + L HA++ + HF+ D W T G ++ VA HE+G
Sbjct: 59 AVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWTKDTT--GTNLFLVAAHEIG 116
Query: 264 HVLGLSHSSVKAASMWP---STRAGTTKGLNDDDIRRMKMLYG 303
H LGL HS+ A M+P S T L+ DDI ++ LYG
Sbjct: 117 HSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLYG 159
>pdb|1BIW|A Chain A, Design And Synthesis Of Conformationally-Constrained Mmp
Inhibitors
pdb|1BIW|B Chain B, Design And Synthesis Of Conformationally-Constrained Mmp
Inhibitors
pdb|1BQO|A Chain A, Discovery Of Potent, Achiral Matrix Metalloproteinase
Inhibitors
pdb|1BQO|B Chain B, Discovery Of Potent, Achiral Matrix Metalloproteinase
Inhibitors
pdb|1B3D|A Chain A, Stromelysin-1
pdb|1B3D|B Chain B, Stromelysin-1
pdb|1CQR|A Chain A, Crystal Structure Of The Stromelysin Catalytic Domain At
2.0 A Resolution
pdb|1CQR|B Chain B, Crystal Structure Of The Stromelysin Catalytic Domain At
2.0 A Resolution
pdb|1C3I|A Chain A, Human Stromelysin-1 Catalytic Domain Complexed With
Ro-26-2812
pdb|1C3I|B Chain B, Human Stromelysin-1 Catalytic Domain Complexed With
Ro-26-2812
pdb|1D8M|A Chain A, Crystal Structure Of Mmp3 Complexed With A Heterocycle-
Based Inhibitor
pdb|1D8M|B Chain B, Crystal Structure Of Mmp3 Complexed With A Heterocycle-
Based Inhibitor
pdb|1D7X|A Chain A, Crystal Structure Of Mmp3 Complexed With A Modified
Proline Scaffold Based Inhibitor.
pdb|1D7X|B Chain B, Crystal Structure Of Mmp3 Complexed With A Modified
Proline Scaffold Based Inhibitor.
pdb|1D8F|A Chain A, Crystal Structure Of Mmp3 Complexed With A Piperazine
Based Inhibitor.
pdb|1D8F|B Chain B, Crystal Structure Of Mmp3 Complexed With A Piperazine
Based Inhibitor.
pdb|1D5J|A Chain A, Crystal Structure Of Mmp3 Complexed With A Thiazepine
Based Inhibitor.
pdb|1D5J|B Chain B, Crystal Structure Of Mmp3 Complexed With A Thiazepine
Based Inhibitor.
pdb|1G49|A Chain A, A Carboxylic Acid Based Inhibitor In Complex With Mmp3
pdb|1G49|B Chain B, A Carboxylic Acid Based Inhibitor In Complex With Mmp3
pdb|1G05|A Chain A, Heterocycle-Based Mmp Inhibitor With P2'substituents
pdb|1G05|B Chain B, Heterocycle-Based Mmp Inhibitor With P2'substituents
pdb|1HY7|A Chain A, A Carboxylic Acid Based Inhibitor In Complex With Mmp3
pdb|1HY7|B Chain B, A Carboxylic Acid Based Inhibitor In Complex With Mmp3
pdb|1BM6|A Chain A, Solution Structure Of The Catalytic Domain Of Human
Stromelysin-1 Complexed To A Potent Non-Peptidic
Inhibitor, Nmr, 20 Structures
pdb|2SRT|A Chain A, Catalytic Domain Of Human Stromelysin-1 At Ph 5.5 And 40oc
Complexed With Inhibitor
pdb|1SLN|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Fibroblast Stromelysin-1 Inhibited With The
N-Carboxy-Alkyl Inhibitor L-702,842
pdb|4DPE|A Chain A, Structure Of Mmp3 Complexed With A Platinum-based
Inhibitor.
pdb|4DPE|B Chain B, Structure Of Mmp3 Complexed With A Platinum-based
Inhibitor.
pdb|4JA1|A Chain A, Structure Of Mmp3 Complexed With A Platinum-based
Inhibitor
pdb|4JA1|B Chain B, Structure Of Mmp3 Complexed With A Platinum-based
Inhibitor
Length = 173
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 82/163 (50%), Gaps = 15/163 (9%)
Query: 151 PRWP---LTKKTVTYAFQPGTRDDIHEPVRVALLLWSNWAPFTFEGSNDYE-NADIKISF 206
P+W LT + V Y +D + V AL +W P TF S YE ADI ISF
Sbjct: 8 PKWRKTHLTYRIVNYT-PDLPKDAVDSAVEKALKVWEEVTPLTF--SRLYEGEADIMISF 64
Query: 207 QRGDHGDGTPFDGPWHTLGHAFSDPYAV---VHFNGDVNWVMGTVKGGFDMQTVALHELG 263
+HGD PFDGP + L HA++ + HF+ D W T G ++ VA HE+G
Sbjct: 65 AVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWTKDTT--GTNLFLVAAHEIG 122
Query: 264 HVLGLSHSSVKAASMWP---STRAGTTKGLNDDDIRRMKMLYG 303
H LGL HS+ A M+P S T L+ DDI ++ LYG
Sbjct: 123 HSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLYG 165
>pdb|1QIA|A Chain A, Crystal Structure Of Stromelysin Catalytic Domain
pdb|1QIA|B Chain B, Crystal Structure Of Stromelysin Catalytic Domain
pdb|1QIA|C Chain C, Crystal Structure Of Stromelysin Catalytic Domain
pdb|1QIA|D Chain D, Crystal Structure Of Stromelysin Catalytic Domain
Length = 162
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 82/163 (50%), Gaps = 15/163 (9%)
Query: 151 PRWP---LTKKTVTYAFQPGTRDDIHEPVRVALLLWSNWAPFTFEGSNDYE-NADIKISF 206
P+W LT + V Y +D + V AL +W P TF S YE ADI ISF
Sbjct: 2 PKWRKTHLTYRIVNYT-PDLPKDAVDSAVEKALKVWEEVTPLTF--SRLYEGEADIMISF 58
Query: 207 QRGDHGDGTPFDGPWHTLGHAFSDPYAV---VHFNGDVNWVMGTVKGGFDMQTVALHELG 263
+HGD PFDGP + L HA++ + HF+ D W T G ++ VA HE+G
Sbjct: 59 AVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWTKDTT--GTNLFLVAAHEIG 116
Query: 264 HVLGLSHSSVKAASMWP---STRAGTTKGLNDDDIRRMKMLYG 303
H LGL HS+ A M+P S T L+ DDI ++ LYG
Sbjct: 117 HSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLYG 159
>pdb|1GKC|A Chain A, Mmp9-inhibitor Complex
pdb|1GKC|B Chain B, Mmp9-inhibitor Complex
Length = 163
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 65/127 (51%), Gaps = 5/127 (3%)
Query: 179 ALLLWSNWAPFTFEGSNDYENADIKISFQRGDHGDGTPFDGPWHTLGHAFSDPYAV---V 235
A LWS P TF +ADI I F +HGDG PFDG L HAF +
Sbjct: 39 AFALWSAVTPLTFTRVYS-RDADIVIQFGVAEHGDGYPFDGKDGLLAHAFPPGPGIQGDA 97
Query: 236 HFNGDVNWVMGTVKGGFDMQTVALHELGHVLGLSHSSVKAASMWPSTRAGTTKGLNDDDI 295
HF+ D W +G +G + + VA HE GH LGL HSSV A M+P R L+ DD+
Sbjct: 98 HFDDDELWSLGKGQG-YSLFLVAAHEFGHALGLDHSSVPEALMYPMYRFTEGPPLHKDDV 156
Query: 296 RRMKMLY 302
++ LY
Sbjct: 157 NGIRHLY 163
>pdb|1B8Y|A Chain A, X-Ray Structure Of Human Stromelysin Catalytic Domain
Complexed With Non-Peptide Inhibitors: Implications For
Inhibitor Selectivity
pdb|3OHL|A Chain A, Catalytic Domain Of Stromelysin-1 In Complex With
N-Hydroxy-2-(4-
Methoxy-N-(Pyridine-3-
Ylmethyl)phenylsulfonamido)acetamide
Length = 167
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 82/163 (50%), Gaps = 15/163 (9%)
Query: 151 PRWP---LTKKTVTYAFQPGTRDDIHEPVRVALLLWSNWAPFTFEGSNDYE-NADIKISF 206
P+W LT + V Y +D + V AL +W P TF S YE ADI ISF
Sbjct: 8 PKWRKTHLTYRIVNYT-PDLPKDAVDSAVEKALKVWEEVTPLTF--SRLYEGEADIMISF 64
Query: 207 QRGDHGDGTPFDGPWHTLGHAFSDPYAV---VHFNGDVNWVMGTVKGGFDMQTVALHELG 263
+HGD PFDGP + L HA++ + HF+ D W T G ++ VA HE+G
Sbjct: 65 AVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWTKDTT--GTNLFLVAAHEIG 122
Query: 264 HVLGLSHSSVKAASMWP---STRAGTTKGLNDDDIRRMKMLYG 303
H LGL HS+ A M+P S T L+ DDI ++ LYG
Sbjct: 123 HSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLYG 165
>pdb|1CAQ|A Chain A, X-Ray Structure Of Human Stromelysin Catalytic Domain
Complexes With Non-Peptide Inhibitors: Implication For
Inhibitor Selectivity
pdb|1CIZ|A Chain A, X-ray Structure Of Human Stromelysin Catalytic Domain
Complexes With Non-peptide Inhibitors: Implication For
Inhibitor Selectivity
pdb|1G4K|A Chain A, X-ray Structure Of A Novel Matrix Metalloproteinase
Inhibitor Complexed To Stromelysin
pdb|1G4K|B Chain B, X-ray Structure Of A Novel Matrix Metalloproteinase
Inhibitor Complexed To Stromelysin
pdb|1G4K|C Chain C, X-ray Structure Of A Novel Matrix Metalloproteinase
Inhibitor Complexed To Stromelysin
pdb|1OO9|A Chain A, Orientation In Solution Of Mmp-3 Catalytic Domain And N-
Timp-1 From Residual Dipolar Couplings
pdb|3USN|A Chain A, Structure Of The Catalytic Domain Of Human Fibroblast
Stromelysin-1 Inhibited With The Thiadiazole Inhibitor
Ipnu-107859, Nmr, 1 Structure
Length = 168
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 82/163 (50%), Gaps = 15/163 (9%)
Query: 151 PRWP---LTKKTVTYAFQPGTRDDIHEPVRVALLLWSNWAPFTFEGSNDYE-NADIKISF 206
P+W LT + V Y +D + V AL +W P TF S YE ADI ISF
Sbjct: 8 PKWRKTHLTYRIVNYT-PDLPKDAVDSAVEKALKVWEEVTPLTF--SRLYEGEADIMISF 64
Query: 207 QRGDHGDGTPFDGPWHTLGHAFSDPYAV---VHFNGDVNWVMGTVKGGFDMQTVALHELG 263
+HGD PFDGP + L HA++ + HF+ D W T G ++ VA HE+G
Sbjct: 65 AVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWTKDTT--GTNLFLVAAHEIG 122
Query: 264 HVLGLSHSSVKAASMWP---STRAGTTKGLNDDDIRRMKMLYG 303
H LGL HS+ A M+P S T L+ DDI ++ LYG
Sbjct: 123 HSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLYG 165
>pdb|3OHO|A Chain A, Catalytic Domain Of Stromelysin-1 In Complex With
N-Hydroxy-2-(4- Methylphenylsulfonamido)acetamide
Length = 169
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 82/163 (50%), Gaps = 15/163 (9%)
Query: 151 PRWP---LTKKTVTYAFQPGTRDDIHEPVRVALLLWSNWAPFTFEGSNDYE-NADIKISF 206
P+W LT + V Y +D + V AL +W P TF S YE ADI ISF
Sbjct: 8 PKWRKTHLTYRIVNYT-PDLPKDAVDSAVEKALKVWEEVTPLTF--SRLYEGEADIMISF 64
Query: 207 QRGDHGDGTPFDGPWHTLGHAFSDPYAV---VHFNGDVNWVMGTVKGGFDMQTVALHELG 263
+HGD PFDGP + L HA++ + HF+ D W T G ++ VA HE+G
Sbjct: 65 AVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWTKDTT--GTNLFLVAAHEIG 122
Query: 264 HVLGLSHSSVKAASMWP---STRAGTTKGLNDDDIRRMKMLYG 303
H LGL HS+ A M+P S T L+ DDI ++ LYG
Sbjct: 123 HSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLYG 165
>pdb|1UMS|A Chain A, Stromelysin-1 Catalytic Domain With Hydrophobic Inhibitor
Bound, Ph 7.0, 32oc, 20 Mm Cacl2, 15% Acetonitrile; Nmr
Ensemble Of 20 Structures
pdb|1UMT|A Chain A, Stromelysin-1 Catalytic Domain With Hydrophobic Inhibitor
Bound, Ph 7.0, 32oc, 20 Mm Cacl2, 15% Acetonitrile; Nmr
Average Of 20 Structures Minimized With Restraints
Length = 174
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 82/163 (50%), Gaps = 15/163 (9%)
Query: 151 PRWP---LTKKTVTYAFQPGTRDDIHEPVRVALLLWSNWAPFTFEGSNDYE-NADIKISF 206
P+W LT + V Y +D + V AL +W P TF S YE ADI ISF
Sbjct: 8 PKWRKTHLTYRIVNYT-PDLPKDAVDSAVEKALKVWEEVTPLTF--SRLYEGEADIMISF 64
Query: 207 QRGDHGDGTPFDGPWHTLGHAFSDPYAV---VHFNGDVNWVMGTVKGGFDMQTVALHELG 263
+HGD PFDGP + L HA++ + HF+ D W T G ++ VA HE+G
Sbjct: 65 AVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWTKDTT--GTNLFLVAAHEIG 122
Query: 264 HVLGLSHSSVKAASMWP---STRAGTTKGLNDDDIRRMKMLYG 303
H LGL HS+ A M+P S T L+ DDI ++ LYG
Sbjct: 123 HSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLYG 165
>pdb|2D1O|A Chain A, Stromelysin-1 (Mmp-3) Complexed To A Hydroxamic Acid
Inhibitor
pdb|2D1O|B Chain B, Stromelysin-1 (Mmp-3) Complexed To A Hydroxamic Acid
Inhibitor
Length = 171
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 82/163 (50%), Gaps = 15/163 (9%)
Query: 151 PRWP---LTKKTVTYAFQPGTRDDIHEPVRVALLLWSNWAPFTFEGSNDYE-NADIKISF 206
P+W LT + V Y +D + V AL +W P TF S YE ADI ISF
Sbjct: 8 PKWRKTHLTYRIVNYT-PDLPKDAVDSAVEKALKVWEEVTPLTF--SRLYEGEADIMISF 64
Query: 207 QRGDHGDGTPFDGPWHTLGHAFSDPYAV---VHFNGDVNWVMGTVKGGFDMQTVALHELG 263
+HGD PFDGP + L HA++ + HF+ D W T G ++ VA HE+G
Sbjct: 65 AVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWTKDTT--GTNLFLVAAHEIG 122
Query: 264 HVLGLSHSSVKAASMWP---STRAGTTKGLNDDDIRRMKMLYG 303
H LGL HS+ A M+P S T L+ DDI ++ LYG
Sbjct: 123 HSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLYG 165
>pdb|1QIB|A Chain A, Crystal Structure Of Gelatinase A Catalytic Domain
Length = 161
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 81/162 (50%), Gaps = 15/162 (9%)
Query: 151 PRW---PLTKKTVTYA--FQPGTRDDIHEPVRVALLLWSNWAPFTFEGSNDYENADIKIS 205
P+W +T + + Y P T DD A +WS+ P F +D E ADI I+
Sbjct: 3 PKWDKNQITYRIIGYTPDLDPETVDDA---FARAFQVWSDVTPLRFSRIHDGE-ADIMIN 58
Query: 206 FQRGDHGDGTPFDGPWHTLGHAFSDPYAV---VHFNGDVNWVMGTVKG-GFDMQTVALHE 261
F R +HGDG PFDG L HAF+ V HF+ D W +G KG G+ + VA HE
Sbjct: 59 FGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDDELWSLG--KGVGYSLFLVAAHE 116
Query: 262 LGHVLGLSHSSVKAASMWPSTRAGTTKGLNDDDIRRMKMLYG 303
GH +GL HS A M P L+ DDI+ ++ LYG
Sbjct: 117 FGHAMGLEHSQDPGALMAPIYTYTKNFRLSQDDIKGIQELYG 158
>pdb|1EAK|A Chain A, Catalytic Domain Of Prommp-2 E404q Mutant
pdb|1EAK|B Chain B, Catalytic Domain Of Prommp-2 E404q Mutant
pdb|1EAK|C Chain C, Catalytic Domain Of Prommp-2 E404q Mutant
pdb|1EAK|D Chain D, Catalytic Domain Of Prommp-2 E404q Mutant
Length = 421
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 78/168 (46%), Gaps = 30/168 (17%)
Query: 88 LESAIKTYQINFNLNATGTLDLQTISTMAQPRCGLPDIINGTTRMQRGSTDKKYDIHYAF 147
L+ +K Q F L TG LD TI TM +PRCG PD+ N Y F
Sbjct: 39 LKDTLKKMQKFFGLPQTGDLDQNTIETMRKPRCGNPDVAN-----------------YNF 81
Query: 148 F-EGPRW---PLTKKTVTYA--FQPGTRDDIHEPVRVALLLWSNWAPFTFEGSNDYENAD 201
F P+W +T + + Y P T DD A +WS+ P F +D E AD
Sbjct: 82 FPRKPKWDKNQITYRIIGYTPDLDPETVDDA---FARAFQVWSDVTPLRFSRIHDGE-AD 137
Query: 202 IKISFQRGDHGDGTPFDGPWHTLGHAFSDPYAV---VHFNGDVNWVMG 246
I I+F R +HGDG PFDG L HAF+ V HF+ D W +G
Sbjct: 138 IMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDDELWTLG 185
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 251 GFDMQTVALHELGHVLGLSHSSVKAASMWPSTRAGTTKGLNDDDIRRMKMLYG 303
G+ + VA H+ GH +GL HS A M P L+ DDI+ ++ LYG
Sbjct: 363 GYSLFLVAAHQFGHAMGLEHSQDPGALMAPIYTYTKNFRLSQDDIKGIQELYG 415
>pdb|1GKD|A Chain A, Mmp9 Active Site Mutant-Inhibitor Complex
pdb|1GKD|B Chain B, Mmp9 Active Site Mutant-Inhibitor Complex
Length = 163
Score = 81.3 bits (199), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 65/127 (51%), Gaps = 5/127 (3%)
Query: 179 ALLLWSNWAPFTFEGSNDYENADIKISFQRGDHGDGTPFDGPWHTLGHAFSDPYAV---V 235
A LWS P TF +ADI I F +HGDG PFDG L HAF +
Sbjct: 39 AFALWSAVTPLTFTRVYS-RDADIVIQFGVAEHGDGYPFDGKDGLLAHAFPPGPGIQGDA 97
Query: 236 HFNGDVNWVMGTVKGGFDMQTVALHELGHVLGLSHSSVKAASMWPSTRAGTTKGLNDDDI 295
HF+ D W +G +G + + VA H+ GH LGL HSSV A M+P R L+ DD+
Sbjct: 98 HFDDDELWSLGKGQG-YSLFLVAAHQFGHALGLDHSSVPEALMYPMYRFTEGPPLHKDDV 156
Query: 296 RRMKMLY 302
++ LY
Sbjct: 157 NGIRHLY 163
>pdb|3AYU|A Chain A, Crystal Structure Of Mmp-2 Active Site Mutant In Complex
With App- Drived Decapeptide Inhibitor
Length = 167
Score = 81.3 bits (199), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 83/169 (49%), Gaps = 16/169 (9%)
Query: 145 YAFF-EGPRW---PLTKKTVTYA--FQPGTRDDIHEPVRVALLLWSNWAPFTFEGSNDYE 198
Y FF P+W +T + + Y P T DD A +WS+ P F +D E
Sbjct: 1 YNFFPRKPKWDKNQITYRIIGYTPDLDPETVDDA---FARAFQVWSDVTPLRFSRIHDGE 57
Query: 199 NADIKISFQRGDHGDGTPFDGPWHTLGHAFSDPYAV---VHFNGDVNWVMGTVKG-GFDM 254
ADI I+F R +HGDG PFDG L HAF+ V HF+ D W +G KG G+ +
Sbjct: 58 -ADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDDELWTLG--KGVGYSL 114
Query: 255 QTVALHELGHVLGLSHSSVKAASMWPSTRAGTTKGLNDDDIRRMKMLYG 303
VA H GH +GL HS A M P L+ DDI+ ++ LYG
Sbjct: 115 FLVAAHAFGHAMGLEHSQDPGALMAPIYTYTKNFRLSQDDIKGIQELYG 163
>pdb|2OVX|A Chain A, Mmp-9 Active Site Mutant With Barbiturate Inhibitor
pdb|2OVX|B Chain B, Mmp-9 Active Site Mutant With Barbiturate Inhibitor
pdb|2OVZ|A Chain A, Mmp-9 Active Site Mutant With Phosphinate Inhibitor
pdb|2OVZ|B Chain B, Mmp-9 Active Site Mutant With Phosphinate Inhibitor
pdb|2OW0|A Chain A, Mmp-9 Active Site Mutant With Iodine-Labeled Carboxylate
Inhibitor
pdb|2OW0|B Chain B, Mmp-9 Active Site Mutant With Iodine-Labeled Carboxylate
Inhibitor
pdb|2OW1|A Chain A, Mmp-9 Active Site Mutant With Trifluoromethyl Hydroxamate
Inhibitor
pdb|2OW1|B Chain B, Mmp-9 Active Site Mutant With Trifluoromethyl Hydroxamate
Inhibitor
pdb|2OW2|A Chain A, Mmp-9 Active Site Mutant With Difluoro Butanoic Acid
Inhibitor
pdb|2OW2|B Chain B, Mmp-9 Active Site Mutant With Difluoro Butanoic Acid
Inhibitor
Length = 159
Score = 81.3 bits (199), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 65/127 (51%), Gaps = 5/127 (3%)
Query: 179 ALLLWSNWAPFTFEGSNDYENADIKISFQRGDHGDGTPFDGPWHTLGHAFSDPYAV---V 235
A LWS P TF +ADI I F +HGDG PFDG L HAF +
Sbjct: 35 AFALWSAVTPLTFTRVYS-RDADIVIQFGVAEHGDGYPFDGKDGLLAHAFPPGPGIQGDA 93
Query: 236 HFNGDVNWVMGTVKGGFDMQTVALHELGHVLGLSHSSVKAASMWPSTRAGTTKGLNDDDI 295
HF+ D W +G +G + + VA H+ GH LGL HSSV A M+P R L+ DD+
Sbjct: 94 HFDDDELWSLGKGQG-YSLFLVAAHQFGHALGLDHSSVPEALMYPMYRFTEGPPLHKDDV 152
Query: 296 RRMKMLY 302
++ LY
Sbjct: 153 NGIRHLY 159
>pdb|1C8T|A Chain A, Human Stromelysin-1 (E202q) Catalytic Domain Complexed
With Ro-26-2812
pdb|1C8T|B Chain B, Human Stromelysin-1 (E202q) Catalytic Domain Complexed
With Ro-26-2812
Length = 167
Score = 80.9 bits (198), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 82/163 (50%), Gaps = 15/163 (9%)
Query: 151 PRWP---LTKKTVTYAFQPGTRDDIHEPVRVALLLWSNWAPFTFEGSNDYE-NADIKISF 206
P+W LT + V Y +D + V AL +W P TF S YE ADI ISF
Sbjct: 5 PKWRKTHLTYRIVNYT-PDLPKDAVDSAVEKALKVWEEVTPLTF--SRLYEGEADIMISF 61
Query: 207 QRGDHGDGTPFDGPWHTLGHAFSDPYAV---VHFNGDVNWVMGTVKGGFDMQTVALHELG 263
+HGD PFDGP + L HA++ + HF+ D W T G ++ VA H++G
Sbjct: 62 AVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWTKDTT--GTNLFLVAAHQIG 119
Query: 264 HVLGLSHSSVKAASMWP---STRAGTTKGLNDDDIRRMKMLYG 303
H LGL HS+ A M+P S T L+ DDI ++ LYG
Sbjct: 120 HSLGLFHSANTEALMYPLYHSLTDLTRFRLSQDDINGIQSLYG 162
>pdb|1CK7|A Chain A, Gelatinase A (Full-Length)
pdb|1GXD|A Chain A, Prommp-2TIMP-2 Complex
pdb|1GXD|B Chain B, Prommp-2TIMP-2 Complex
Length = 631
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 78/168 (46%), Gaps = 30/168 (17%)
Query: 88 LESAIKTYQINFNLNATGTLDLQTISTMAQPRCGLPDIINGTTRMQRGSTDKKYDIHYAF 147
L+ +K Q F L TG LD TI TM +PRCG PD+ N Y F
Sbjct: 41 LKDTLKKMQKFFGLPQTGDLDQNTIETMRKPRCGNPDVAN-----------------YNF 83
Query: 148 F-EGPRW---PLTKKTVTYA--FQPGTRDDIHEPVRVALLLWSNWAPFTFEGSNDYENAD 201
F P+W +T + + Y P T DD A +WS+ P F +D E AD
Sbjct: 84 FPRKPKWDKNQITYRIIGYTPDLDPETVDDA---FARAFQVWSDVTPLRFSRIHDGE-AD 139
Query: 202 IKISFQRGDHGDGTPFDGPWHTLGHAFSDPYAV---VHFNGDVNWVMG 246
I I+F R +HGDG PFDG L HAF+ V HF+ D W +G
Sbjct: 140 IMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDDELWTLG 187
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%)
Query: 251 GFDMQTVALHELGHVLGLSHSSVKAASMWPSTRAGTTKGLNDDDIRRMKMLYG 303
G+ + VA H GH +GL HS A M P L+ DDI+ ++ LYG
Sbjct: 365 GYSLFLVAAHAFGHAMGLEHSQDPGALMAPIYTYTKNFRLSQDDIKGIQELYG 417
>pdb|1CXV|A Chain A, Structure Of Recombinant Mouse Collagenase-3 (Mmp-13)
pdb|1CXV|B Chain B, Structure Of Recombinant Mouse Collagenase-3 (Mmp-13)
Length = 164
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/154 (37%), Positives = 78/154 (50%), Gaps = 9/154 (5%)
Query: 155 LTKKTVTYAFQPGTRDDIHEPVRVALLLWSNWAPFTFEGSNDYENADIKISFQRGDHGDG 214
LT + V Y + ++ + R A +WS+ P F D ADI ISF +HGD
Sbjct: 15 LTYRIVNYT-PDMSHSEVEKAFRKAFKVWSDVTPLNFTRIYD-GTADIMISFGTKEHGDF 72
Query: 215 TPFDGPWHTLGHAF---SDPYAVVHFNGDVNWVMGTVKGGFDMQTVALHELGHVLGLSHS 271
PFDGP L HAF + HF+ D W + G+++ VA HELGH LGL HS
Sbjct: 73 YPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWT--SSSKGYNLFIVAAHELGHSLGLDHS 130
Query: 272 SVKAASMWP-STRAGTTK-GLNDDDIRRMKMLYG 303
A M+P T G + L DDD++ ++ LYG
Sbjct: 131 KDPGALMFPIYTYTGKSHFMLPDDDVQGIQFLYG 164
>pdb|1UEA|A Chain A, Mmp-3TIMP-1 Complex
pdb|1UEA|C Chain C, Mmp-3TIMP-1 Complex
Length = 173
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 81/163 (49%), Gaps = 15/163 (9%)
Query: 151 PRWP---LTKKTVTYAFQPGTRDDIHEPVRVALLLWSNWAPFTFEGSNDYE-NADIKISF 206
P+W LT + V Y +D + V AL +W P TF S YE ADI ISF
Sbjct: 8 PKWRKTHLTYRIVNYT-PDLPKDAVDSAVEKALKVWEEVTPLTF--SRLYEGEADIXISF 64
Query: 207 QRGDHGDGTPFDGPWHTLGHAFSDPYAV---VHFNGDVNWVMGTVKGGFDMQTVALHELG 263
+HGD PFDGP + L HA++ + HF+ D W T G ++ VA HE+G
Sbjct: 65 AVREHGDFYPFDGPGNVLAHAYAPGPGINGDAHFDDDEQWTKDTT--GTNLFLVAAHEIG 122
Query: 264 HVLGLSHSSVKAASMWP---STRAGTTKGLNDDDIRRMKMLYG 303
H LGL HS+ A +P S T L+ DDI ++ LYG
Sbjct: 123 HSLGLFHSANTEALXYPLYHSLTDLTRFRLSQDDINGIQSLYG 165
>pdb|1RM8|A Chain A, Crystal Structure Of The Catalytic Domain Of Mmp-16MT3-
Mmp: Characterization Of Mt-Mmp Specific Features
Length = 169
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 83/170 (48%), Gaps = 18/170 (10%)
Query: 150 GPRWPLTKKTVTYAFQ---PGTRD-DIHEPVRVALLLWSNWAPFTFEG------SNDYEN 199
G +W K +TY+ + P D + + +R A +W N P TFE N +
Sbjct: 1 GQKW--QHKHITYSIKNVTPKVGDPETRKAIRRAFDVWQNVTPLTFEEVPYSELENGKRD 58
Query: 200 ADIKISFQRGDHGDGTPFDGPWHTLGHAFSDPYAV---VHFNGDVNWVMGTVK-GGFDMQ 255
DI I F G HGD +PFDG L HA+ + HF+ D W +G G D+
Sbjct: 59 VDITIIFASGFHGDSSPFDGEGGFLAHAYFPGPGIGGDTHFDSDEPWTLGNPNHDGNDLF 118
Query: 256 TVALHELGHVLGLSHSSVKAASMWPSTRAGTTKG--LNDDDIRRMKMLYG 303
VA+HELGH LGL HS+ A M P + T L +DD++ ++ +YG
Sbjct: 119 LVAVHELGHALGLEHSNDPTAIMAPFYQYMETDNFKLPNDDLQGIQKIYG 168
>pdb|1HOV|A Chain A, Solution Structure Of A Catalytic Domain Of Mmp-2
Complexed With Sc-74020
Length = 163
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 79/168 (47%), Gaps = 15/168 (8%)
Query: 145 YAFF-EGPRW---PLTKKTVTYA--FQPGTRDDIHEPVRVALLLWSNWAPFTFEGSNDYE 198
Y FF P+W +T + + Y P T DD A +WS+ P F +D E
Sbjct: 2 YNFFPRKPKWDKNQITYRIIGYTPDLDPETVDDA---FARAFQVWSDVTPLRFSRIHDGE 58
Query: 199 NADIKISFQRGDHGDGTPFDGPWHTLGHAFSDPYAV---VHFNGDVNWVMGTVKGGFDMQ 255
ADI I+F R +HGDG PFDG L HAF+ V HF+ D W + +
Sbjct: 59 -ADIMINFGRWEHGDGYPFDGKDGLLAHAFAPGTGVGGDSHFDDDELWT--NTSANYSLF 115
Query: 256 TVALHELGHVLGLSHSSVKAASMWPSTRAGTTKGLNDDDIRRMKMLYG 303
VA HE GH +GL HS A M P L+ DDI+ ++ LYG
Sbjct: 116 LVAAHEFGHAMGLEHSQDPGALMAPIYTYTKNFRLSQDDIKGIQELYG 163
>pdb|3KRY|A Chain A, Crystal Structure Of Mmp-13 In Complex With Sc-78080
pdb|3KRY|B Chain B, Crystal Structure Of Mmp-13 In Complex With Sc-78080
pdb|3KRY|C Chain C, Crystal Structure Of Mmp-13 In Complex With Sc-78080
pdb|3KRY|D Chain D, Crystal Structure Of Mmp-13 In Complex With Sc-78080
Length = 164
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 78/154 (50%), Gaps = 9/154 (5%)
Query: 155 LTKKTVTYAFQPGTRDDIHEPVRVALLLWSNWAPFTFEGSNDYENADIKISFQRGDHGDG 214
LT + V Y T ++ + + A +WS+ P F +D ADI ISF +HGD
Sbjct: 15 LTYRIVNYT-PDMTHSEVEKAFKKAFKVWSDVTPLNFTRLHD-GIADIMISFGIKEHGDF 72
Query: 215 TPFDGPWHTLGHAF---SDPYAVVHFNGDVNWVMGTVKGGFDMQTVALHELGHVLGLSHS 271
PFDGP L HAF + HF+ D W + G+++ VA HE GH LGL HS
Sbjct: 73 YPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWT--SSSKGYNLFLVAAHEFGHSLGLDHS 130
Query: 272 SVKAASMWP-STRAGTTK-GLNDDDIRRMKMLYG 303
A M+P T G + L DDD++ ++ LYG
Sbjct: 131 KDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLYG 164
>pdb|4A7B|A Chain A, Mmp13 In Complex With A Novel Selective Non Zinc Binding
Inhibitor Cmpd22
pdb|4A7B|B Chain B, Mmp13 In Complex With A Novel Selective Non Zinc Binding
Inhibitor Cmpd22
pdb|3TVC|A Chain A, Human Mmp13 In Complex With L-Glutamate Motif Inhibitor
Length = 169
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 78/154 (50%), Gaps = 9/154 (5%)
Query: 155 LTKKTVTYAFQPGTRDDIHEPVRVALLLWSNWAPFTFEGSNDYENADIKISFQRGDHGDG 214
LT + V Y T ++ + + A +WS+ P F +D ADI ISF +HGD
Sbjct: 15 LTYRIVNYT-PDMTHSEVEKAFKKAFKVWSDVTPLNFTRLHD-GIADIMISFGIKEHGDF 72
Query: 215 TPFDGPWHTLGHAF---SDPYAVVHFNGDVNWVMGTVKGGFDMQTVALHELGHVLGLSHS 271
PFDGP L HAF + HF+ D W + G+++ VA HE GH LGL HS
Sbjct: 73 YPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWT--SSSKGYNLFLVAAHEFGHSLGLDHS 130
Query: 272 SVKAASMWP-STRAGTTK-GLNDDDIRRMKMLYG 303
A M+P T G + L DDD++ ++ LYG
Sbjct: 131 KDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLYG 164
>pdb|2OW9|A Chain A, Crystal Structure Analysis Of The Mmp13 Catalytic Domain
In Complex With Specific Inhibitor
pdb|2OW9|B Chain B, Crystal Structure Analysis Of The Mmp13 Catalytic Domain
In Complex With Specific Inhibitor
pdb|2OZR|A Chain A, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
pdb|2OZR|B Chain B, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
pdb|2OZR|C Chain C, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
pdb|2OZR|D Chain D, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
pdb|2OZR|E Chain E, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
pdb|2OZR|F Chain F, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
pdb|2OZR|G Chain G, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
pdb|2OZR|H Chain H, Mmp13 Catalytic Domain Complexed With
4-{[1-Methyl-2,4-Dioxo-6-(3-
Phenylprop-1-Yn-1-Yl)-1,
4-Dihydroquinazolin-3(2h)-Yl]methyl}benzoic Acid
Length = 170
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 78/154 (50%), Gaps = 9/154 (5%)
Query: 155 LTKKTVTYAFQPGTRDDIHEPVRVALLLWSNWAPFTFEGSNDYENADIKISFQRGDHGDG 214
LT + V Y T ++ + + A +WS+ P F +D ADI ISF +HGD
Sbjct: 18 LTYRIVNYT-PDMTHSEVEKAFKKAFKVWSDVTPLNFTRLHD-GIADIMISFGIKEHGDF 75
Query: 215 TPFDGPWHTLGHAF---SDPYAVVHFNGDVNWVMGTVKGGFDMQTVALHELGHVLGLSHS 271
PFDGP L HAF + HF+ D W + G+++ VA HE GH LGL HS
Sbjct: 76 YPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWT--SSSKGYNLFLVAAHEFGHSLGLDHS 133
Query: 272 SVKAASMWP-STRAGTTK-GLNDDDIRRMKMLYG 303
A M+P T G + L DDD++ ++ LYG
Sbjct: 134 KDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLYG 167
>pdb|1FLS|A Chain A, Solution Structure Of The Catalytic Fragment Of Human
Collagenase-3 (Mmp-13) Complexed With A Hydroxamic Acid
Inhibitor
pdb|1FM1|A Chain A, Solution Structure Of The Catalytic Fragment Of Human
Collagenase-3 (Mmp-13) Complexed With A Hydroxamic Acid
Inhibitor
pdb|1ZTQ|A Chain A, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-033
pdb|1ZTQ|B Chain B, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-033
pdb|1ZTQ|C Chain C, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-033
pdb|1ZTQ|D Chain D, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-033
pdb|2E2D|A Chain A, Flexibility And Variability Of Timp Binding: X-Ray
Structure Of The Complex Between Collagenase-3MMP-13 And
Timp-2
pdb|2PJT|A Chain A, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-344
pdb|2PJT|B Chain B, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-344
pdb|2PJT|C Chain C, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-344
pdb|2PJT|D Chain D, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With Way-344
Length = 165
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 78/154 (50%), Gaps = 9/154 (5%)
Query: 155 LTKKTVTYAFQPGTRDDIHEPVRVALLLWSNWAPFTFEGSNDYENADIKISFQRGDHGDG 214
LT + V Y T ++ + + A +WS+ P F +D ADI ISF +HGD
Sbjct: 15 LTYRIVNYT-PDMTHSEVEKAFKKAFKVWSDVTPLNFTRLHD-GIADIMISFGIKEHGDF 72
Query: 215 TPFDGPWHTLGHAF---SDPYAVVHFNGDVNWVMGTVKGGFDMQTVALHELGHVLGLSHS 271
PFDGP L HAF + HF+ D W + G+++ VA HE GH LGL HS
Sbjct: 73 YPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWT--SSSKGYNLFLVAAHEFGHSLGLDHS 130
Query: 272 SVKAASMWP-STRAGTTK-GLNDDDIRRMKMLYG 303
A M+P T G + L DDD++ ++ LYG
Sbjct: 131 KDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLYG 164
>pdb|3LJZ|A Chain A, Crystal Structure Of Human Mmp-13 Complexed With An
Amino-2-Indanol Compound
pdb|3LJZ|B Chain B, Crystal Structure Of Human Mmp-13 Complexed With An
Amino-2-Indanol Compound
pdb|3LJZ|C Chain C, Crystal Structure Of Human Mmp-13 Complexed With An
Amino-2-Indanol Compound
pdb|3LJZ|D Chain D, Crystal Structure Of Human Mmp-13 Complexed With An
Amino-2-Indanol Compound
pdb|3O2X|A Chain A, Mmp-13 In Complex With Selective Tetrazole Core Inhibitor
pdb|3O2X|B Chain B, Mmp-13 In Complex With Selective Tetrazole Core Inhibitor
pdb|3O2X|C Chain C, Mmp-13 In Complex With Selective Tetrazole Core Inhibitor
pdb|3O2X|D Chain D, Mmp-13 In Complex With Selective Tetrazole Core Inhibitor
Length = 164
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 78/154 (50%), Gaps = 9/154 (5%)
Query: 155 LTKKTVTYAFQPGTRDDIHEPVRVALLLWSNWAPFTFEGSNDYENADIKISFQRGDHGDG 214
LT + V Y T ++ + + A +WS+ P F +D ADI ISF +HGD
Sbjct: 15 LTYRIVNYT-PDMTHSEVEKAFKKAFKVWSDVTPLNFTRLHD-GIADIMISFGIKEHGDF 72
Query: 215 TPFDGPWHTLGHAF---SDPYAVVHFNGDVNWVMGTVKGGFDMQTVALHELGHVLGLSHS 271
PFDGP L HAF + HF+ D W + G+++ VA HE GH LGL HS
Sbjct: 73 YPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWT--SSSKGYNLFLVAAHEFGHSLGLDHS 130
Query: 272 SVKAASMWP-STRAGTTK-GLNDDDIRRMKMLYG 303
A M+P T G + L DDD++ ++ LYG
Sbjct: 131 KDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLYG 164
>pdb|1EUB|A Chain A, Solution Structure Of The Catalytic Domain Of Human
Collagenase-3 (Mmp-13) Complexed To A Potent
Non-Peptidic Sulfonamide Inhibitor
pdb|1XUC|A Chain A, Matrix Metalloproteinase-13 Complexed With Non-Zinc
Binding Inhibitor
pdb|1XUC|B Chain B, Matrix Metalloproteinase-13 Complexed With Non-Zinc
Binding Inhibitor
pdb|1XUD|A Chain A, Matrix Metalloproteinase-13 Complexed With Non-Zinc
Binding Inhibitor
pdb|1XUD|B Chain B, Matrix Metalloproteinase-13 Complexed With Non-Zinc
Binding Inhibitor
pdb|1XUR|A Chain A, Matrix Metalloproteinase-13 Complexed With Non-Zinc
Binding Inhibitor
pdb|1XUR|B Chain B, Matrix Metalloproteinase-13 Complexed With Non-Zinc
Binding Inhibitor
pdb|3ELM|A Chain A, Crystal Structure Of Mmp-13 Complexed With Inhibitor 24f
pdb|3ELM|B Chain B, Crystal Structure Of Mmp-13 Complexed With Inhibitor 24f
pdb|3I7G|A Chain A, Mmp-13 In Complex With A Non Zinc-Chelating Inhibitor
pdb|3I7G|B Chain B, Mmp-13 In Complex With A Non Zinc-Chelating Inhibitor
pdb|3I7I|A Chain A, Mmp-13 In Complex With A Non Zinc-Chelating Inhibitor
pdb|3I7I|B Chain B, Mmp-13 In Complex With A Non Zinc-Chelating Inhibitor
pdb|2YIG|A Chain A, Mmp13 In Complex With A Novel Selective Non Zinc Binding
Inhibitor
pdb|2YIG|B Chain B, Mmp13 In Complex With A Novel Selective Non Zinc Binding
Inhibitor
pdb|3ZXH|A Chain A, Mmp-13 Complexed With 2-Napthylsulfonamide Hydroxamic Acid
Inhibitor
pdb|3ZXH|B Chain B, Mmp-13 Complexed With 2-Napthylsulfonamide Hydroxamic Acid
Inhibitor
Length = 171
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 78/154 (50%), Gaps = 9/154 (5%)
Query: 155 LTKKTVTYAFQPGTRDDIHEPVRVALLLWSNWAPFTFEGSNDYENADIKISFQRGDHGDG 214
LT + V Y T ++ + + A +WS+ P F +D ADI ISF +HGD
Sbjct: 15 LTYRIVNYT-PDMTHSEVEKAFKKAFKVWSDVTPLNFTRLHD-GIADIMISFGIKEHGDF 72
Query: 215 TPFDGPWHTLGHAF---SDPYAVVHFNGDVNWVMGTVKGGFDMQTVALHELGHVLGLSHS 271
PFDGP L HAF + HF+ D W + G+++ VA HE GH LGL HS
Sbjct: 73 YPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWT--SSSKGYNLFLVAAHEFGHSLGLDHS 130
Query: 272 SVKAASMWP-STRAGTTK-GLNDDDIRRMKMLYG 303
A M+P T G + L DDD++ ++ LYG
Sbjct: 131 KDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLYG 164
>pdb|456C|A Chain A, Crystal Structure Of Collagenase-3 (Mmp-13) Complexed To A
Diphenyl-Ether Sulphone Based Hydroxamic Acid
pdb|456C|B Chain B, Crystal Structure Of Collagenase-3 (Mmp-13) Complexed To A
Diphenyl-Ether Sulphone Based Hydroxamic Acid
pdb|830C|A Chain A, Collagenase-3 (Mmp-13) Complexed To A Sulphone-Based
Hydroxamic Acid
pdb|830C|B Chain B, Collagenase-3 (Mmp-13) Complexed To A Sulphone-Based
Hydroxamic Acid
pdb|1YOU|A Chain A, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With A Potent Pyrimidinetrione Inhibitor
pdb|1YOU|B Chain B, Crystal Structure Of The Catalytic Domain Of Mmp-13
Complexed With A Potent Pyrimidinetrione Inhibitor
Length = 168
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 78/154 (50%), Gaps = 9/154 (5%)
Query: 155 LTKKTVTYAFQPGTRDDIHEPVRVALLLWSNWAPFTFEGSNDYENADIKISFQRGDHGDG 214
LT + V Y T ++ + + A +WS+ P F +D ADI ISF +HGD
Sbjct: 15 LTYRIVNYT-PDMTHSEVEKAFKKAFKVWSDVTPLNFTRLHD-GIADIMISFGIKEHGDF 72
Query: 215 TPFDGPWHTLGHAF---SDPYAVVHFNGDVNWVMGTVKGGFDMQTVALHELGHVLGLSHS 271
PFDGP L HAF + HF+ D W + G+++ VA HE GH LGL HS
Sbjct: 73 YPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWT--SSSKGYNLFLVAAHEFGHSLGLDHS 130
Query: 272 SVKAASMWP-STRAGTTK-GLNDDDIRRMKMLYG 303
A M+P T G + L DDD++ ++ LYG
Sbjct: 131 KDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLYG 164
>pdb|3KEC|A Chain A, Crystal Structure Of Human Mmp-13 Complexed With A
Phenyl-2h-Tetrazole Compound
pdb|3KEC|B Chain B, Crystal Structure Of Human Mmp-13 Complexed With A
Phenyl-2h-Tetrazole Compound
pdb|3KEJ|A Chain A, Crystal Structure Of Human Mmp-13 Complexed With A
(Pyridin-4-Yl)-2h- Tetrazole Compound
pdb|3KEJ|B Chain B, Crystal Structure Of Human Mmp-13 Complexed With A
(Pyridin-4-Yl)-2h- Tetrazole Compound
pdb|3KEK|A Chain A, Crystal Structure Of Human Mmp-13 Complexed With A
(Pyridin-4-Yl)-2h- Tetrazole Compound
pdb|3KEK|B Chain B, Crystal Structure Of Human Mmp-13 Complexed With A
(Pyridin-4-Yl)-2h- Tetrazole Compound
Length = 167
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 78/154 (50%), Gaps = 9/154 (5%)
Query: 155 LTKKTVTYAFQPGTRDDIHEPVRVALLLWSNWAPFTFEGSNDYENADIKISFQRGDHGDG 214
LT + V Y T ++ + + A +WS+ P F +D ADI ISF +HGD
Sbjct: 15 LTYRIVNYT-PDMTHSEVEKAFKKAFKVWSDVTPLNFTRLHD-GIADIMISFGIKEHGDF 72
Query: 215 TPFDGPWHTLGHAF---SDPYAVVHFNGDVNWVMGTVKGGFDMQTVALHELGHVLGLSHS 271
PFDGP L HAF + HF+ D W + G+++ VA HE GH LGL HS
Sbjct: 73 YPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWT--SSSKGYNLFLVAAHEFGHSLGLDHS 130
Query: 272 SVKAASMWP-STRAGTTK-GLNDDDIRRMKMLYG 303
A M+P T G + L DDD++ ++ LYG
Sbjct: 131 KDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLYG 164
>pdb|2D1N|A Chain A, Collagenase-3 (Mmp-13) Complexed To A Hydroxamic Acid
Inhibitor
pdb|2D1N|B Chain B, Collagenase-3 (Mmp-13) Complexed To A Hydroxamic Acid
Inhibitor
Length = 166
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 78/154 (50%), Gaps = 9/154 (5%)
Query: 155 LTKKTVTYAFQPGTRDDIHEPVRVALLLWSNWAPFTFEGSNDYENADIKISFQRGDHGDG 214
LT + V Y T ++ + + A +WS+ P F +D ADI ISF +HGD
Sbjct: 15 LTYRIVNYT-PDMTHSEVEKAFKKAFKVWSDVTPLNFTRLHD-GIADIMISFGIKEHGDF 72
Query: 215 TPFDGPWHTLGHAF---SDPYAVVHFNGDVNWVMGTVKGGFDMQTVALHELGHVLGLSHS 271
PFDGP L HAF + HF+ D W + G+++ VA HE GH LGL HS
Sbjct: 73 YPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWT--SSSKGYNLFLVAAHEFGHSLGLDHS 130
Query: 272 SVKAASMWP-STRAGTTK-GLNDDDIRRMKMLYG 303
A M+P T G + L DDD++ ++ LYG
Sbjct: 131 KDPGALMFPIYTYTGKSHFMLPDDDVQGIQSLYG 164
>pdb|1BQQ|M Chain M, Crystal Structure Of The Mt1-Mmp--Timp-2 Complex
pdb|1BUV|M Chain M, Crystal Structure Of The Mt1-Mmp-Timp-2 Complex
Length = 174
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/146 (38%), Positives = 71/146 (48%), Gaps = 17/146 (11%)
Query: 173 HEPVRVALLLWSNWAPFTF---------EGSNDYENADIKISFQRGDHGDGTPFDGPWHT 223
+E +R A +W + P F EG + ADI I F G HGD TPFDG
Sbjct: 28 YEAIRKAFRVWESATPLRFREVPYAYIREGHE--KQADIMIFFAEGFHGDSTPFDGEGGF 85
Query: 224 LGHAFSDPYAV---VHFNGDVNW-VMGTVKGGFDMQTVALHELGHVLGLSHSSVKAASMW 279
L HA+ + HF+ W V G D+ VA+HELGH LGL HSS +A M
Sbjct: 86 LAHAYFPGPNIGGDTHFDSAEPWTVRNEDLNGNDIFLVAVHELGHALGLEHSSDPSAIMA 145
Query: 280 PSTRAGTTKG--LNDDDIRRMKMLYG 303
P + T+ L DDD R ++ LYG
Sbjct: 146 PFYQWMDTENFVLPDDDRRGIQQLYG 171
>pdb|3MA2|D Chain D, Complex Membrane Type-1 Matrix Metalloproteinase (Mt1-Mmp)
With Tissue Inhibitor Of Metalloproteinase-1 (Timp-1)
pdb|3MA2|A Chain A, Complex Membrane Type-1 Matrix Metalloproteinase (Mt1-Mmp)
With Tissue Inhibitor Of Metalloproteinase-1 (Timp-1)
Length = 181
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/146 (38%), Positives = 71/146 (48%), Gaps = 17/146 (11%)
Query: 173 HEPVRVALLLWSNWAPFTF---------EGSNDYENADIKISFQRGDHGDGTPFDGPWHT 223
+E +R A +W + P F EG + ADI I F G HGD TPFDG
Sbjct: 30 YEAIRKAFRVWESATPLRFREVPYAYIREGHE--KQADIMIFFAEGFHGDSTPFDGEGGF 87
Query: 224 LGHAFSDPYAV---VHFNGDVNW-VMGTVKGGFDMQTVALHELGHVLGLSHSSVKAASMW 279
L HA+ + HF+ W V G D+ VA+HELGH LGL HSS +A M
Sbjct: 88 LAHAYFPGPNIGGDTHFDSAEPWTVRNEDLNGNDIFLVAVHELGHALGLEHSSDPSAIMA 147
Query: 280 PSTRAGTTKG--LNDDDIRRMKMLYG 303
P + T+ L DDD R ++ LYG
Sbjct: 148 PFYQWMDTENFVLPDDDRRGIQQLYG 173
>pdb|1L6J|A Chain A, Crystal Structure Of Human Matrix Metalloproteinase Mmp9
(gelatinase B)
Length = 425
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 63/150 (42%), Gaps = 26/150 (17%)
Query: 104 TGTLDLQTISTMAQPRCGLPDIINGTTRMQRGSTDKKYDIHYAFFEGPRWPLTKKTVTYA 163
TG LD T+ M PRCG+PD+ R Q D K+ H +TY
Sbjct: 64 TGELDSATLKAMRTPRCGVPDL----GRFQTFEGDLKWHHH--------------NITYW 105
Query: 164 FQPGTRD----DIHEPVRVALLLWSNWAPFTFEGSNDYENADIKISFQRGDHGDGTPFDG 219
Q + D I + A LWS P TF +ADI I F +HGDG PFDG
Sbjct: 106 IQNYSEDLPRAVIDDAFARAFALWSAVTPLTFTRVYS-RDADIVIQFGVAEHGDGYPFDG 164
Query: 220 PWHTLGHAFSDPYAV---VHFNGDVNWVMG 246
L HAF + HF+ D W +G
Sbjct: 165 KDGLLAHAFPPGPGIQGDAHFDDDELWSLG 194
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 236 HFNGDVNWVMGTVKGGFDMQTVALHELGHVLGLSHSSVKAASMWPSTRAGTTKGLNDDDI 295
+F+ D W +G + + VA HE GH LGL HSSV A M+P R L+ DD+
Sbjct: 359 NFDSDKKWGFCPDQG-YSLFLVAAHEFGHALGLDHSSVPEALMYPMYRFTEGPPLHKDDV 417
Query: 296 RRMKMLYG 303
++ LYG
Sbjct: 418 NGIRHLYG 425
>pdb|3ZVS|B Chain B, Crystal Structure Of Archaemetzincin (Amza) From
Archaeoglobus Fulgidus At 1.4 A Resolution Complexed
With Malonate
Length = 160
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/15 (73%), Positives = 13/15 (86%)
Query: 258 ALHELGHVLGLSHSS 272
A+HE+GHVLGL H S
Sbjct: 115 AVHEIGHVLGLKHCS 129
>pdb|3ZVS|A Chain A, Crystal Structure Of Archaemetzincin (Amza) From
Archaeoglobus Fulgidus At 1.4 A Resolution Complexed
With Malonate
pdb|3ZVS|C Chain C, Crystal Structure Of Archaemetzincin (Amza) From
Archaeoglobus Fulgidus At 1.4 A Resolution Complexed
With Malonate
pdb|4A3W|A Chain A, Crystal Structure Of Archaemetzincin (Amza) From
Archaeoglobus Fulgidus At 2.16 A Resolution Complexed
With Citrate
Length = 160
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/15 (73%), Positives = 13/15 (86%)
Query: 258 ALHELGHVLGLSHSS 272
A+HE+GHVLGL H S
Sbjct: 115 AVHEIGHVLGLKHCS 129
>pdb|4AXQ|A Chain A, Crystal Structure Of Archaemetzincin (Amza) From
Archaeoglobus Fulgidus At 1.4 A Resolution
Length = 163
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/15 (73%), Positives = 13/15 (86%)
Query: 258 ALHELGHVLGLSHSS 272
A+HE+GHVLGL H S
Sbjct: 118 AVHEIGHVLGLKHCS 132
>pdb|3UT2|A Chain A, Crystal Structure Of Fungal Magkatg2
pdb|3UT2|B Chain B, Crystal Structure Of Fungal Magkatg2
Length = 764
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 253 DMQTVALHELGHVLGLSHSSVKAASMWPSTRAG 285
D +TVAL GH G +H +VK +++ P+ A
Sbjct: 281 DTETVALIAGGHAFGKTHGAVKGSNIGPAPEAA 313
>pdb|3U1R|A Chain A, Structure Analysis Of A New Psychrophilic Marine Protease
Length = 480
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 24/107 (22%)
Query: 174 EPVRVALLLWSNWAPFTF-EGSNDYENADIKISFQRGDHGDGTPFDGPWHTLGHAFS--- 229
E +++L W++ A TF EG RGD G T + G AF+
Sbjct: 104 EQAKLSLESWADVAKVTFTEGPA-----------ARGDDGHMTFANFSASNGGAAFAYLP 152
Query: 230 ------DPYAVVHFNGDVNWVMGTVKGGFDMQTVALHELGHVLGLSH 270
+ + +++ + DVN G +G + QT+ HE+GH LGLSH
Sbjct: 153 NSSRKGESWYLINKDYDVNKTPG--EGNYGRQTLT-HEIGHTLGLSH 196
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,734,348
Number of Sequences: 62578
Number of extensions: 441593
Number of successful extensions: 1136
Number of sequences better than 100.0: 95
Number of HSP's better than 100.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 925
Number of HSP's gapped (non-prelim): 98
length of query: 305
length of database: 14,973,337
effective HSP length: 98
effective length of query: 207
effective length of database: 8,840,693
effective search space: 1830023451
effective search space used: 1830023451
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)