Query 037271
Match_columns 184
No_of_seqs 114 out of 133
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 10:32:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037271.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037271hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02893 GRAM: GRAM domain; I 99.4 1.1E-13 2.4E-18 95.5 2.9 66 56-131 2-67 (69)
2 smart00568 GRAM domain in gluc 99.3 5.8E-12 1.3E-16 85.0 4.1 59 63-132 2-60 (61)
3 PF14470 bPH_3: Bacterial PH d 96.7 0.015 3.3E-07 41.1 8.3 94 64-173 2-95 (96)
4 KOG4347 GTPase-activating prot 88.8 0.49 1.1E-05 47.1 4.0 96 59-169 14-111 (671)
5 PF14844 PH_BEACH: PH domain a 84.9 1.7 3.7E-05 32.0 4.2 85 69-155 2-90 (106)
6 PF08498 Sterol_MT_C: Sterol m 81.6 0.7 1.5E-05 33.6 1.0 53 8-60 6-58 (67)
7 PF00169 PH: PH domain; Inter 80.4 5.5 0.00012 26.7 5.1 64 93-157 19-86 (104)
8 smart00683 DM16 Repeats in sea 72.5 5.7 0.00012 28.0 3.4 39 79-130 15-53 (55)
9 KOG3473 RNA polymerase II tran 70.7 2.5 5.4E-05 33.7 1.5 22 134-155 10-31 (112)
10 smart00233 PH Pleckstrin homol 70.1 23 0.0005 22.9 5.9 43 115-158 42-85 (102)
11 KOG4471 Phosphatidylinositol 3 68.0 4.7 0.0001 40.5 3.0 64 57-133 30-93 (717)
12 PF07289 DUF1448: Protein of u 67.4 4.7 0.0001 37.4 2.7 82 61-158 149-232 (339)
13 PF07719 TPR_2: Tetratricopept 66.9 7.2 0.00016 22.1 2.6 18 160-177 16-33 (34)
14 PF11605 Vps36_ESCRT-II: Vacuo 62.9 12 0.00026 28.1 3.7 48 83-141 35-82 (89)
15 PF08567 TFIIH_BTF_p62_N: TFII 61.9 34 0.00074 25.0 5.9 54 84-150 12-67 (79)
16 PF00515 TPR_1: Tetratricopept 57.6 9.2 0.0002 22.0 1.9 16 160-175 16-31 (34)
17 cd01244 PH_RasGAP_CG9209 RAS_G 54.4 25 0.00054 26.5 4.2 46 100-150 30-76 (98)
18 cd00900 PH-like Pleckstrin hom 54.1 57 0.0012 21.0 5.5 65 82-158 18-84 (99)
19 smart00028 TPR Tetratricopepti 53.1 17 0.00036 18.1 2.3 16 160-175 16-31 (34)
20 PF13181 TPR_8: Tetratricopept 51.8 16 0.00035 20.8 2.3 17 160-176 16-32 (34)
21 cd00821 PH Pleckstrin homology 49.5 67 0.0015 20.5 5.5 59 88-156 21-79 (96)
22 PF10882 bPH_5: Bacterial PH d 48.3 18 0.00038 26.2 2.5 29 113-142 13-41 (100)
23 KOG2415 Electron transfer flav 47.7 7.8 0.00017 38.1 0.7 50 25-77 345-396 (621)
24 PF12068 DUF3548: Domain of un 46.1 27 0.00058 30.2 3.6 58 112-173 107-164 (213)
25 KOG1032 Uncharacterized conser 45.1 21 0.00046 35.1 3.2 92 63-168 117-208 (590)
26 PF03931 Skp1_POZ: Skp1 family 45.1 15 0.00033 25.1 1.6 14 141-154 1-14 (62)
27 PF13176 TPR_7: Tetratricopept 44.4 14 0.0003 22.3 1.2 15 160-174 14-28 (36)
28 PRK13708 plasmid maintenance p 41.7 40 0.00086 26.3 3.7 34 117-156 30-64 (101)
29 PF01845 CcdB: CcdB protein; 41.4 42 0.00091 25.8 3.7 35 116-156 30-65 (102)
30 cd00851 MTH1175 This uncharact 40.6 66 0.0014 22.7 4.5 39 118-160 2-41 (103)
31 TIGR02681 phage_pRha phage reg 40.4 35 0.00076 26.3 3.2 31 145-175 68-107 (108)
32 PF09890 DUF2117: Uncharacteri 33.4 16 0.00034 32.1 0.3 63 12-87 49-114 (215)
33 cd00562 NifX_NifB This CD repr 33.2 77 0.0017 22.2 3.8 40 118-161 1-40 (102)
34 PF08238 Sel1: Sel1 repeat; I 31.0 48 0.001 19.3 2.1 15 160-174 23-37 (39)
35 cd00852 NifB NifB belongs to a 30.7 93 0.002 22.7 4.0 41 118-162 1-41 (106)
36 cd08544 Reeler Reeler, the N-t 30.0 84 0.0018 23.9 3.8 34 115-159 19-52 (135)
37 KOG3294 WW domain binding prot 27.9 45 0.00098 30.2 2.2 40 82-131 45-84 (261)
38 PF03517 Voldacs: Regulator of 27.8 46 0.001 26.2 2.0 15 86-100 1-15 (135)
39 COG1098 VacB Predicted RNA bin 27.0 26 0.00056 28.7 0.5 36 13-50 36-78 (129)
40 smart00252 SH2 Src homology 2 26.3 41 0.0009 23.1 1.4 18 154-171 3-20 (84)
41 PF13414 TPR_11: TPR repeat; P 25.5 62 0.0013 20.9 2.1 16 160-175 18-33 (69)
42 PF13424 TPR_12: Tetratricopep 24.7 66 0.0014 21.3 2.1 15 160-174 20-34 (78)
43 TIGR03884 sel_bind_Methan sele 24.5 1.4E+02 0.0031 22.4 4.0 31 141-179 15-45 (74)
44 PF13174 TPR_6: Tetratricopept 24.4 95 0.0021 17.0 2.5 16 160-175 15-30 (33)
45 PF14559 TPR_19: Tetratricopep 24.2 83 0.0018 20.1 2.5 17 160-176 6-22 (68)
46 PF08909 DUF1854: Domain of un 24.0 58 0.0012 26.6 2.0 36 139-174 17-54 (133)
47 PF07676 PD40: WD40-like Beta 23.8 48 0.001 19.8 1.2 11 92-102 20-30 (39)
48 PF10756 bPH_6: Bacterial PH d 23.7 68 0.0015 22.2 2.1 37 117-158 18-54 (73)
49 KOG0937 Adaptor complexes medi 23.3 1E+02 0.0022 29.7 3.7 49 96-146 245-293 (424)
50 smart00671 SEL1 Sel1-like repe 23.2 81 0.0018 17.8 2.1 16 159-174 19-34 (36)
51 PF03708 Avian_gp85: Avian ret 22.8 62 0.0013 29.1 2.1 24 129-157 73-96 (256)
52 PF13428 TPR_14: Tetratricopep 22.7 98 0.0021 19.1 2.5 17 160-176 16-32 (44)
53 PF13374 TPR_10: Tetratricopep 22.4 87 0.0019 17.9 2.1 16 160-175 17-32 (42)
54 TIGR01280 xseB exodeoxyribonuc 22.3 84 0.0018 22.4 2.3 22 159-180 1-22 (67)
55 PF08348 PAS_6: YheO-like PAS 21.7 1.2E+02 0.0027 23.5 3.4 58 28-92 46-104 (118)
56 cd01178 IPT_NFAT IPT domain of 21.2 93 0.002 24.3 2.6 72 74-148 4-87 (101)
57 cd00189 TPR Tetratricopeptide 21.1 1E+02 0.0022 18.5 2.3 17 160-176 49-65 (100)
58 PF14472 DUF4429: Domain of un 21.1 1.3E+02 0.0029 22.3 3.3 30 119-152 27-59 (94)
59 cd00271 Chemokine_C Chemokine_ 21.0 1.1E+02 0.0023 22.2 2.7 30 71-101 22-51 (72)
60 PF08512 Rtt106: Histone chape 20.8 3.5E+02 0.0077 19.9 6.3 60 82-157 9-72 (95)
61 smart00512 Skp1 Found in Skp1 20.8 73 0.0016 23.4 1.9 20 141-164 2-21 (104)
No 1
>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.
Probab=99.41 E-value=1.1e-13 Score=95.45 Aligned_cols=66 Identities=32% Similarity=0.576 Sum_probs=46.1
Q ss_pred ehhhhccCCcchhhhhccceeeecCCCcceeeEEeeeceeEeeecCccceecCCCCeeeeEEEEEEecCccccccc
Q 037271 56 IFKQLFAVKEEEKLLKACQCYLSTTAGPIAGLLFISTEKVAFCSERSLKFYSSKGELIRVHYKVLIPLGKIKRVNQ 131 (184)
Q Consensus 56 vFkq~F~~~~~EkLlka~~CYLSTtaGPVaG~LfiSt~kvAFcSdrpl~~~~p~g~~~~~~YKVvIPL~kik~vnp 131 (184)
-|++.|..+++|+|...+.|+|..+.+|+.|.||||+.+++|+|+.+..-. ++++|||..|..|..
T Consensus 2 ~f~~~F~lp~~E~li~~~~c~l~~~~~~~~G~LyiT~~~lcF~s~~~~~~~----------~~~~ipl~~I~~i~k 67 (69)
T PF02893_consen 2 KFRKLFKLPEEERLIEEYSCALFKSKIPVQGRLYITNNYLCFYSNKFGSKT----------CKFVIPLSDIKSIEK 67 (69)
T ss_dssp ---------TT--EEEEEEETTTEE---EEEEEEEESSEEEEEESSSSS-E-----------EEEEEGGGEEEEEE
T ss_pred cccccccCCCCCeEEEEEEEEEECCccceeeEEEECCCEEEEEECCCCCce----------EEEEEEhHheeEEEE
Confidence 489999999999999999999999999999999999999999998765543 789999999998864
No 2
>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins.
Probab=99.25 E-value=5.8e-12 Score=85.00 Aligned_cols=59 Identities=44% Similarity=0.739 Sum_probs=51.5
Q ss_pred CCcchhhhhccceeeecCCCcceeeEEeeeceeEeeecCccceecCCCCeeeeEEEEEEecCcccccccC
Q 037271 63 VKEEEKLLKACQCYLSTTAGPIAGLLFISTEKVAFCSERSLKFYSSKGELIRVHYKVLIPLGKIKRVNQS 132 (184)
Q Consensus 63 ~~~~EkLlka~~CYLSTtaGPVaG~LfiSt~kvAFcSdrpl~~~~p~g~~~~~~YKVvIPL~kik~vnps 132 (184)
..++|+|...|.|+|+ +.+|+.|.||||+.+++|+|+.+-... -+++|||+.|.+|+..
T Consensus 2 l~~~E~l~~~~~C~l~-~~~~~~G~lyiT~~~l~F~S~~~~~~~----------~~~~ipl~~I~~i~k~ 60 (61)
T smart00568 2 LPEEEKLIADYSCYLS-RDGPVQGRLYISNYRLCFRSDLPGKLT----------PKVVIPLADITRIEKS 60 (61)
T ss_pred cCCCcEEEEEEEeEEC-CCccccEEEEEECCEEEEEccCCCCee----------EEEEEEHHHeeEEEEC
Confidence 4689999999999999 779999999999999999998665443 2899999999998753
No 3
>PF14470 bPH_3: Bacterial PH domain
Probab=96.74 E-value=0.015 Score=41.10 Aligned_cols=94 Identities=17% Similarity=0.193 Sum_probs=67.0
Q ss_pred CcchhhhhccceeeecCCCcceeeEEeeeceeEeeecCccceecCCCCeeeeEEEEEEecCcccccccCcccCCCCCceE
Q 037271 64 KEEEKLLKACQCYLSTTAGPIAGLLFISTEKVAFCSERSLKFYSSKGELIRVHYKVLIPLGKIKRVNQSVNMKKQSEKYI 143 (184)
Q Consensus 64 ~~~EkLlka~~CYLSTtaGPVaG~LfiSt~kvAFcSdrpl~~~~p~g~~~~~~YKVvIPL~kik~vnps~n~~~p~eKYI 143 (184)
.|||+.+-...|.+-...+.-.|+|+++++||-||+-.++. . .....||+++|.+|+-.... -...|
T Consensus 2 ~~~E~I~~~~~~~~~~~~~~~~g~l~~TnkRlif~~~~~~~------~----~~~~~i~y~~I~~v~~~~g~---~~~~i 68 (96)
T PF14470_consen 2 KEDEEIEYVAVGSYNYFFTSFPGVLVLTNKRLIFYSKGMFG------G----KKFESIPYDDITSVSFKKGI---LGGKI 68 (96)
T ss_pred cCCCEEEEEEEEEEeecccCceeEEEEeCCEEEEEEcccCC------C----ceEEEEEhhheEEEEEEccc---cccEE
Confidence 58999999999988877889999999999999999873221 1 13489999999999997444 34669
Q ss_pred EEEEecCceeeeeecccHHHHHHHHHHHHh
Q 037271 144 EVYTVDGFDFWFMGFLNYQKAFKYLQQAIS 173 (184)
Q Consensus 144 qIvTvD~~eFWFMGFvnY~kA~k~Lq~a~~ 173 (184)
.|.| ++..+= ++-+. ..-++.+-+.|+
T Consensus 69 ~i~~-~~~~~~-i~~i~-k~~~~~~~~~i~ 95 (96)
T PF14470_consen 69 TIET-NGEKIK-IDNIQ-KGDVKEFYEYIK 95 (96)
T ss_pred EEEE-CCEEEE-EEEcC-HHHHHHHHHHHh
Confidence 9888 444443 45443 333344444443
No 4
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=88.81 E-value=0.49 Score=47.10 Aligned_cols=96 Identities=24% Similarity=0.321 Sum_probs=75.6
Q ss_pred hhccCCcchhhhhccceeeecCCC--cceeeEEeeeceeEeeecCccceecCCCCeeeeEEEEEEecCcccccccCcccC
Q 037271 59 QLFAVKEEEKLLKACQCYLSTTAG--PIAGLLFISTEKVAFCSERSLKFYSSKGELIRVHYKVLIPLGKIKRVNQSVNMK 136 (184)
Q Consensus 59 q~F~~~~~EkLlka~~CYLSTtaG--PVaG~LfiSt~kvAFcSdrpl~~~~p~g~~~~~~YKVvIPL~kik~vnps~n~~ 136 (184)
-.|..+ |+|--.-.|=|-|..- -..|-||+||..++|.||-+=.. .+++||.-|+.|.-.. ..
T Consensus 14 ~~Frlp--e~l~~~~~~~l~~p~s~~~~~G~l~~s~~f~cF~s~~~~~c------------~~~~Pl~~vr~ve~~~-~s 78 (671)
T KOG4347|consen 14 AFFRLP--EKLDGSTMCNLWTPYSRYHEQGRLFLSTNFICFASDTEWLC------------SFITPLLAVRSVERLD-DS 78 (671)
T ss_pred ceeecc--hhcCceeecccCCCcchhhccceeeeccceEEeecCCcccc------------eEeeehhhhhhhhccC-cc
Confidence 456665 9999999999999776 58999999999999999976553 3899999999998755 22
Q ss_pred CCCCceEEEEEecCceeeeeecccHHHHHHHHH
Q 037271 137 KQSEKYIEVYTVDGFDFWFMGFLNYQKAFKYLQ 169 (184)
Q Consensus 137 ~p~eKYIqIvTvD~~eFWFMGFvnY~kA~k~Lq 169 (184)
+--..=|-+.|-.+-.|-|-|...=++.+.-+.
T Consensus 79 s~~~~~i~~~~~~~~~~~f~~~~~r~~~~~k~~ 111 (671)
T KOG4347|consen 79 SLFTQLISLFTSNMVGMRFGGLTERLKLLSKLH 111 (671)
T ss_pred ccchhhhHHhhcCcceEEecchhhHHHHHHHHh
Confidence 222333667888999999999988777766554
No 5
>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C.
Probab=84.94 E-value=1.7 Score=31.97 Aligned_cols=85 Identities=24% Similarity=0.358 Sum_probs=54.2
Q ss_pred hhhccceeeecCCCcceeeEEeeeceeEeeecCcccee-cCCC---CeeeeEEEEEEecCcccccccCcccCCCCCceEE
Q 037271 69 LLKACQCYLSTTAGPIAGLLFISTEKVAFCSERSLKFY-SSKG---ELIRVHYKVLIPLGKIKRVNQSVNMKKQSEKYIE 144 (184)
Q Consensus 69 Llka~~CYLSTtaGPVaG~LfiSt~kvAFcSdrpl~~~-~p~g---~~~~~~YKVvIPL~kik~vnps~n~~~p~eKYIq 144 (184)
++-++.|-+=|..+-+.|+|.|++..+.|..|..-... .... .....+--..+|+.+|+.|-+.--..+ +-=||
T Consensus 2 i~~s~~c~~I~~~~~~~G~l~i~~~~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~I~~v~~RRyllr--~~AlE 79 (106)
T PF14844_consen 2 ILLSVPCELITPLDSIPGTLIITKSSIYFIPNDNSSENKISSENPSISISKPKSKRWPLSDIKEVHKRRYLLR--DTALE 79 (106)
T ss_dssp -SEEEEEEEEETTEEEEEEEEE-SSEEEEEE--TTSHHHHCS-HHHHCC---TCEEEEGGGEEEEEEEEETTE--EEEEE
T ss_pred EEEEEEEEEEEeeeeEEEEEEEeCCEEEEEECCcccccccccccccccccCCceEEEEHHHhHHHHHHHhcCc--ceEEE
Confidence 45578899999999999999999999999998111110 0000 001112235689999999987544443 34489
Q ss_pred EEEecCceeee
Q 037271 145 VYTVDGFDFWF 155 (184)
Q Consensus 145 IvTvD~~eFWF 155 (184)
|.+.||..+-|
T Consensus 80 iF~~dg~s~f~ 90 (106)
T PF14844_consen 80 IFFSDGRSYFF 90 (106)
T ss_dssp EEETTS-EEEE
T ss_pred EEEcCCcEEEE
Confidence 99999988754
No 6
>PF08498 Sterol_MT_C: Sterol methyltransferase C-terminal; InterPro: IPR013705 This domain is found to the C terminus of a methyltransferase domain (IPR013216 from INTERPRO) in fungal and plant sterol methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006694 steroid biosynthetic process
Probab=81.63 E-value=0.7 Score=33.56 Aligned_cols=53 Identities=32% Similarity=0.348 Sum_probs=47.4
Q ss_pred HHHhhhcchhhhhhhhhhhcccCCChhHHHhhhhccccchhhccChheehhhh
Q 037271 8 RVNKLGKRADNFASGVKEHVRLGPKITETVKGKLSLGAKILQVGGMEKIFKQL 60 (184)
Q Consensus 8 ~~~~~~rKae~~a~~i~~h~k~gp~~set~~Gklslgakil~~GG~ekvFkq~ 60 (184)
+|+.++|..-...=.+.|-+++.|+=+-.+.--|..+|.-|.+||-++||--.
T Consensus 6 r~t~~Gr~~t~~~v~~LE~lglAPkGt~~v~~~L~~aa~~Lv~GG~~giFTPM 58 (67)
T PF08498_consen 6 RMTWLGRFITHALVRVLEFLGLAPKGTSKVAEMLAKAADGLVEGGKTGIFTPM 58 (67)
T ss_pred eccHHHHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHHHHHhhhcCCcCch
Confidence 57788888888888899999999999999999999999999999999999643
No 7
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=80.42 E-value=5.5 Score=26.72 Aligned_cols=64 Identities=20% Similarity=0.287 Sum_probs=45.3
Q ss_pred ceeEeeecCccceecCCCCeeeeEEEEEEecCcccccccCccc----CCCCCceEEEEEecCceeeeee
Q 037271 93 EKVAFCSERSLKFYSSKGELIRVHYKVLIPLGKIKRVNQSVNM----KKQSEKYIEVYTVDGFDFWFMG 157 (184)
Q Consensus 93 ~kvAFcSdrpl~~~~p~g~~~~~~YKVvIPL~kik~vnps~n~----~~p~eKYIqIvTvD~~eFWFMG 157 (184)
+|.++-.+.-|.+..++.+.....++-+|||..+ .|.+..+. ..+.+..++|.+.++-.++|..
T Consensus 19 ~r~~vL~~~~L~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~ 86 (104)
T PF00169_consen 19 KRYFVLRDSYLLYYKSSKDKSDSKPKGSIPLDDC-TVRPDPSSDFLSNKKRKNCFEITTPNGKSYLFSA 86 (104)
T ss_dssp EEEEEEETTEEEEESSTTTTTESSESEEEEGTTE-EEEEETSSTSTSTSSSSSEEEEEETTSEEEEEEE
T ss_pred EEEEEEECCEEEEEecCccccceeeeEEEEecCc-eEEEcCccccccccCCCcEEEEEeCCCcEEEEEc
Confidence 4455555556666555544445567789999999 77776666 3678888999998887888764
No 8
>smart00683 DM16 Repeats in sea squirt COS41.4, worm R01H10.6, fly CG1126 etc.
Probab=72.53 E-value=5.7 Score=27.95 Aligned_cols=39 Identities=18% Similarity=0.418 Sum_probs=30.2
Q ss_pred cCCCcceeeEEeeeceeEeeecCccceecCCCCeeeeEEEEEEecCcccccc
Q 037271 79 TTAGPIAGLLFISTEKVAFCSERSLKFYSSKGELIRVHYKVLIPLGKIKRVN 130 (184)
Q Consensus 79 TtaGPVaG~LfiSt~kvAFcSdrpl~~~~p~g~~~~~~YKVvIPL~kik~vn 130 (184)
...| --|+|++++-|+...|+..-.| .|.||.-+|..++
T Consensus 15 gn~G-~~G~l~VTNlRiiW~s~~~~~~------------NlSIgy~~i~~i~ 53 (55)
T smart00683 15 GNNG-DLGVFFVTNLRLVWHSDTNPRF------------NISVGYLQITNVR 53 (55)
T ss_pred CCCC-CeeEEEEEeeEEEEEeCCCCce------------EEEEcceeEEEEE
Confidence 3455 4599999999999999876554 4888888877664
No 9
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=70.73 E-value=2.5 Score=33.69 Aligned_cols=22 Identities=14% Similarity=0.389 Sum_probs=19.0
Q ss_pred ccCCCCCceEEEEEecCceeee
Q 037271 134 NMKKQSEKYIEVYTVDGFDFWF 155 (184)
Q Consensus 134 n~~~p~eKYIqIvTvD~~eFWF 155 (184)
.-+-|+++|+.+|+-|+|||-.
T Consensus 10 g~egp~~~yVkLvS~Ddhefii 31 (112)
T KOG3473|consen 10 GCEGPDSMYVKLVSSDDHEFII 31 (112)
T ss_pred CccCcchhheEeecCCCcEEEE
Confidence 3466999999999999999964
No 10
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=70.13 E-value=23 Score=22.86 Aligned_cols=43 Identities=19% Similarity=0.169 Sum_probs=29.3
Q ss_pred eEEEEEEecCcccccccCcccC-CCCCceEEEEEecCceeeeeec
Q 037271 115 VHYKVLIPLGKIKRVNQSVNMK-KQSEKYIEVYTVDGFDFWFMGF 158 (184)
Q Consensus 115 ~~YKVvIPL~kik~vnps~n~~-~p~eKYIqIvTvD~~eFWFMGF 158 (184)
....-.|||..+ .+....+.. .+..-.+.|.+-++..+.|..-
T Consensus 42 ~~~~~~i~l~~~-~v~~~~~~~~~~~~~~f~l~~~~~~~~~f~~~ 85 (102)
T smart00233 42 YKPKGSIDLSGI-TVREAPDPDSAKKPHCFEIKTADRRSYLLQAE 85 (102)
T ss_pred CCCceEEECCcC-EEEeCCCCccCCCceEEEEEecCCceEEEEcC
Confidence 446678999999 554444432 4556778888888778888753
No 11
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.05 E-value=4.7 Score=40.47 Aligned_cols=64 Identities=23% Similarity=0.422 Sum_probs=47.6
Q ss_pred hhhhccCCcchhhhhccceeeecCCCcceeeEEeeeceeEeeecCccceecCCCCeeeeEEEEEEecCcccccccCc
Q 037271 57 FKQLFAVKEEEKLLKACQCYLSTTAGPIAGLLFISTEKVAFCSERSLKFYSSKGELIRVHYKVLIPLGKIKRVNQSV 133 (184)
Q Consensus 57 Fkq~F~~~~~EkLlka~~CYLSTtaGPVaG~LfiSt~kvAFcSdrpl~~~~p~g~~~~~~YKVvIPL~kik~vnps~ 133 (184)
..--|...|||.+..-- |..-=.||+.|+|.||+-|+=|-|.-. +.+|-+-|||.-|.+|+--.
T Consensus 30 ~~~~~~~L~GE~i~~~~--y~c~f~G~~~g~l~lsNyRl~fks~~t-----------~~~~~~~VPLg~Ie~vek~~ 93 (717)
T KOG4471|consen 30 LQVPFPLLPGESIIDEK--YICPFLGAVDGTLALSNYRLYFKSKET-----------DPPFVLDVPLGVIERVEKRG 93 (717)
T ss_pred ccCcccccCCcccccce--ecccccccccceEEeeeeEEEEEeccC-----------CCceeEeechhhhhhhhhcC
Confidence 45567788999884322 555556899999999999999987532 22577889999888887644
No 12
>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5). It consists of eukaryotic proteins of around 375 residues in length.
Probab=67.36 E-value=4.7 Score=37.43 Aligned_cols=82 Identities=17% Similarity=0.315 Sum_probs=62.3
Q ss_pred ccCCcchhhhhcc--ceeeecCCCcceeeEEeeeceeEeeecCccceecCCCCeeeeEEEEEEecCcccccccCcccCCC
Q 037271 61 FAVKEEEKLLKAC--QCYLSTTAGPIAGLLFISTEKVAFCSERSLKFYSSKGELIRVHYKVLIPLGKIKRVNQSVNMKKQ 138 (184)
Q Consensus 61 F~~~~~EkLlka~--~CYLSTtaGPVaG~LfiSt~kvAFcSdrpl~~~~p~g~~~~~~YKVvIPL~kik~vnps~n~~~p 138 (184)
+-..|+|++.... .+=||+.-|=+ |+++|++-|+..|||-.-.|+ |.||.=+|+++.-.+++--|
T Consensus 149 L~lLp~E~v~~~~~gVwnls~dqGnL-GtfivTNvRiVW~A~~ne~fN------------VSiPylqi~~i~ir~SKfG~ 215 (339)
T PF07289_consen 149 LKLLPQEQVYSRVNGVWNLSSDQGNL-GTFIVTNVRIVWFADMNESFN------------VSIPYLQIKSIRIRDSKFGP 215 (339)
T ss_pred EeeCCccEEeeccCCEEEcccCCCce-eEEEEeeeEEEEEccCCcccc------------ccchHhhheeeeeeccccce
Confidence 4567888776655 47899999988 999999999999999876665 99999999999887665544
Q ss_pred CCceEEEEEecCceeeeeec
Q 037271 139 SEKYIEVYTVDGFDFWFMGF 158 (184)
Q Consensus 139 ~eKYIqIvTvD~~eFWFMGF 158 (184)
+ +-|-|....-=.-.||
T Consensus 216 a---LVieT~~~sGgYVLGF 232 (339)
T PF07289_consen 216 A---LVIETSESSGGYVLGF 232 (339)
T ss_pred E---EEEEEeccCCcEEEEE
Confidence 3 4444544444455676
No 13
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=66.92 E-value=7.2 Score=22.07 Aligned_cols=18 Identities=28% Similarity=0.626 Sum_probs=14.4
Q ss_pred cHHHHHHHHHHHHhhcCC
Q 037271 160 NYQKAFKYLQQAISQSCT 177 (184)
Q Consensus 160 nY~kA~k~Lq~a~~~~~~ 177 (184)
+|++|.+++++|++...+
T Consensus 16 ~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 16 NYEEAIEYFEKALELDPN 33 (34)
T ss_dssp -HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHHHCcC
Confidence 689999999999986543
No 14
>PF11605 Vps36_ESCRT-II: Vacuolar protein sorting protein 36 Vps36; InterPro: IPR021648 Vps36 is a subunit of ESCRT-II, a protein involved in driving protein sorting from endosomes to lysosomes. The GLUE domain of Vps36 allows for a tight interaction to occur between the protein and Vps28, a subunit of ESCRT-I. This interaction is critical for ubiquitinated cargo progression from early to late endosomes []. ; PDB: 2HTH_B 2DX5_A 2CAY_B.
Probab=62.93 E-value=12 Score=28.07 Aligned_cols=48 Identities=19% Similarity=0.342 Sum_probs=31.3
Q ss_pred cceeeEEeeeceeEeeecCccceecCCCCeeeeEEEEEEecCcccccccCcccCCCCCc
Q 037271 83 PIAGLLFISTEKVAFCSERSLKFYSSKGELIRVHYKVLIPLGKIKRVNQSVNMKKQSEK 141 (184)
Q Consensus 83 PVaG~LfiSt~kvAFcSdrpl~~~~p~g~~~~~~YKVvIPL~kik~vnps~n~~~p~eK 141 (184)
=-.|.||++|.||.+--|....- .-+.|||+.|..+.-....-+.+-|
T Consensus 35 ~q~G~l~LTsHRliw~d~~~~~~-----------~s~~l~L~~i~~~e~~~gf~~sSpK 82 (89)
T PF11605_consen 35 FQNGRLYLTSHRLIWVDDSDPSK-----------HSIALPLSLISHIEYSAGFLKSSPK 82 (89)
T ss_dssp -SCEEEEEESSEEEEEESSGHCH-----------H-EEEEGGGEEEEEEE-STTSSS-E
T ss_pred ccCCEEEEEeeEEEEEcCCCCce-----------eEEEEEchHeEEEEEEccccCCCCe
Confidence 34799999999999975543221 1288999999888555544444444
No 15
>PF08567 TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal domain; InterPro: IPR013876 The N-terminal region of the TFIIH basal transcription factor complex p62 subunit (BTF2-p62) forms an interaction with the 3' endonuclease XPG, which is essential for activity. The 3' endonuclease XPG is a major component of the nucleotide excision repair machinery. The structure of the N-terminal region reveals that it adopts a pleckstrin homology (PH) fold [, ]. ; PDB: 1Y5O_A 2LOX_A 2GS0_A 2L2I_A 2K2U_A 1PFJ_A 2RNR_B.
Probab=61.89 E-value=34 Score=25.01 Aligned_cols=54 Identities=24% Similarity=0.407 Sum_probs=35.0
Q ss_pred ceeeEEeeece--eEeeecCccceecCCCCeeeeEEEEEEecCcccccccCcccCCCCCceEEEEEecC
Q 037271 84 IAGLLFISTEK--VAFCSERSLKFYSSKGELIRVHYKVLIPLGKIKRVNQSVNMKKQSEKYIEVYTVDG 150 (184)
Q Consensus 84 VaG~LfiSt~k--vAFcSdrpl~~~~p~g~~~~~~YKVvIPL~kik~vnps~n~~~p~eKYIqIvTvD~ 150 (184)
+.|+|+|+..+ +...-+. .++.. .|.||+..|+.-..|- +..+.==++|+-.|+
T Consensus 12 ~~G~L~l~~d~~~~~W~~~~------~~~~~-----~v~i~~~~I~~lq~Sp--~~s~Kv~Lki~~~~~ 67 (79)
T PF08567_consen 12 KDGTLTLTEDRKPLEWTPKA------SDGPS-----TVSIPLNDIKNLQQSP--EGSPKVMLKIVLKDD 67 (79)
T ss_dssp EEEEEEEETTCSSEEEEECC------SSSSS-----EEEEETTTEEEEEE----TTSSTEEEEEEETTS
T ss_pred CCcEEEEecCCceEEEeecC------CCCCc-----eEEEEHHHhhhhccCC--CCCcceEEEEEEecC
Confidence 35999999888 7765431 11111 4899999999865532 334555678887766
No 16
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=57.58 E-value=9.2 Score=22.00 Aligned_cols=16 Identities=31% Similarity=0.725 Sum_probs=13.4
Q ss_pred cHHHHHHHHHHHHhhc
Q 037271 160 NYQKAFKYLQQAISQS 175 (184)
Q Consensus 160 nY~kA~k~Lq~a~~~~ 175 (184)
+|++|++++++||+..
T Consensus 16 ~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 16 DYEEALEYYQRALELD 31 (34)
T ss_dssp -HHHHHHHHHHHHHHS
T ss_pred CchHHHHHHHHHHHHC
Confidence 6899999999999754
No 17
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=54.43 E-value=25 Score=26.54 Aligned_cols=46 Identities=17% Similarity=0.109 Sum_probs=29.0
Q ss_pred cCccceecCCCCeeeeEEEEEEecCcccccccCcccCCCCCce-EEEEEecC
Q 037271 100 ERSLKFYSSKGELIRVHYKVLIPLGKIKRVNQSVNMKKQSEKY-IEVYTVDG 150 (184)
Q Consensus 100 drpl~~~~p~g~~~~~~YKVvIPL~kik~vnps~n~~~p~eKY-IqIvTvD~ 150 (184)
++.|+|....+. .-+=.|||..+++|....+.... .+| +||||-|.
T Consensus 30 ~~~L~Y~k~~~~----~~~g~I~L~~i~~ve~v~~~~~~-~~~~fqivt~~r 76 (98)
T cd01244 30 TTHLSWAKDVQC----KKSALIKLAAIKGTEPLSDKSFV-NVDIITIVCEDD 76 (98)
T ss_pred CCEEEEECCCCC----ceeeeEEccceEEEEEcCCcccC-CCceEEEEeCCC
Confidence 445555432222 23457999999999876654322 245 89999775
No 18
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=54.13 E-value=57 Score=21.02 Aligned_cols=65 Identities=17% Similarity=0.147 Sum_probs=40.4
Q ss_pred CcceeeEEeeeceeEeeecCccceecCCCCeeeeEEEEEEecCcccccccCcccCCCCCceEEEEEec--Cceeeeeec
Q 037271 82 GPIAGLLFISTEKVAFCSERSLKFYSSKGELIRVHYKVLIPLGKIKRVNQSVNMKKQSEKYIEVYTVD--GFDFWFMGF 158 (184)
Q Consensus 82 GPVaG~LfiSt~kvAFcSdrpl~~~~p~g~~~~~~YKVvIPL~kik~vnps~n~~~p~eKYIqIvTvD--~~eFWFMGF 158 (184)
..-...++|+...+-++++.+-..... -++|+..+. +....... ....-++|++.+ +..++|.--
T Consensus 18 ~w~~~~~~l~~~~l~~~~~~~~~~~~~----------~~~~l~~~~-v~~~~~~~-~~~~~F~i~~~~~~~~~~~~~~~ 84 (99)
T cd00900 18 RWKRRWFFLFDDGLLLYKSDDKKEIKP----------GSIPLSEIS-VEEDPDGS-DDPNCFAIVTKDRGRRVFVFQAD 84 (99)
T ss_pred CceeeEEEEECCEEEEEEcCCCCcCCC----------CEEEccceE-EEECCCCC-CCCceEEEECCCCCcEEEEEEcC
Confidence 444455666677777776665433211 568999888 76654432 234678888887 777777543
No 19
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=53.14 E-value=17 Score=18.08 Aligned_cols=16 Identities=25% Similarity=0.688 Sum_probs=13.0
Q ss_pred cHHHHHHHHHHHHhhc
Q 037271 160 NYQKAFKYLQQAISQS 175 (184)
Q Consensus 160 nY~kA~k~Lq~a~~~~ 175 (184)
+|++|..++++++...
T Consensus 16 ~~~~a~~~~~~~~~~~ 31 (34)
T smart00028 16 DYDEALEYYEKALELD 31 (34)
T ss_pred hHHHHHHHHHHHHccC
Confidence 5789999999998643
No 20
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=51.80 E-value=16 Score=20.79 Aligned_cols=17 Identities=24% Similarity=0.649 Sum_probs=14.7
Q ss_pred cHHHHHHHHHHHHhhcC
Q 037271 160 NYQKAFKYLQQAISQSC 176 (184)
Q Consensus 160 nY~kA~k~Lq~a~~~~~ 176 (184)
+|++|++++++|++...
T Consensus 16 ~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 16 DYEEALEYFEKALELNP 32 (34)
T ss_dssp SHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhhCC
Confidence 68999999999998654
No 21
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=49.45 E-value=67 Score=20.46 Aligned_cols=59 Identities=20% Similarity=0.272 Sum_probs=34.7
Q ss_pred EEeeeceeEeeecCccceecCCCCeeeeEEEEEEecCcccccccCcccCCCCCceEEEEEecCceeeee
Q 037271 88 LFISTEKVAFCSERSLKFYSSKGELIRVHYKVLIPLGKIKRVNQSVNMKKQSEKYIEVYTVDGFDFWFM 156 (184)
Q Consensus 88 LfiSt~kvAFcSdrpl~~~~p~g~~~~~~YKVvIPL~kik~vnps~n~~~p~eKYIqIvTvD~~eFWFM 156 (184)
+++....+.+|++.+-.. ....+-+|||.. -.+....+.. ..+..++|++.++..+.|.
T Consensus 21 ~~L~~~~l~~~~~~~~~~--------~~~~~~~i~l~~-~~v~~~~~~~-~~~~~f~i~~~~~~~~~~~ 79 (96)
T cd00821 21 FVLFNDLLLYYKKKSSKK--------SYKPKGSIPLSG-AEVEESPDDS-GRKNCFEIRTPDGRSYLLQ 79 (96)
T ss_pred EEEECCEEEEEECCCCCc--------CCCCcceEEcCC-CEEEECCCcC-CCCcEEEEecCCCcEEEEE
Confidence 444455666665554321 223456788888 3333332222 4578899998888888876
No 22
>PF10882 bPH_5: Bacterial PH domain; InterPro: IPR020482 This entry contains membrane proteins with no known function.
Probab=48.28 E-value=18 Score=26.16 Aligned_cols=29 Identities=21% Similarity=0.219 Sum_probs=22.7
Q ss_pred eeeEEEEEEecCcccccccCcccCCCCCce
Q 037271 113 IRVHYKVLIPLGKIKRVNQSVNMKKQSEKY 142 (184)
Q Consensus 113 ~~~~YKVvIPL~kik~vnps~n~~~p~eKY 142 (184)
.|..+++.||+++|..|....+.. +.-|.
T Consensus 13 ~~~~~~~~Ip~~~I~~v~~~~~~~-~~~R~ 41 (100)
T PF10882_consen 13 RWPFGKITIPLAEIESVELVDDLP-PGIRT 41 (100)
T ss_pred EEccccEEEEHHHcEEEEeccccC-cceEE
Confidence 467889999999999999877666 44443
No 23
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=47.70 E-value=7.8 Score=38.12 Aligned_cols=50 Identities=26% Similarity=0.571 Sum_probs=37.6
Q ss_pred hhcccCCChhHHHhh--hhccccchhhccChheehhhhccCCcchhhhhccceee
Q 037271 25 EHVRLGPKITETVKG--KLSLGAKILQVGGMEKIFKQLFAVKEEEKLLKACQCYL 77 (184)
Q Consensus 25 ~h~k~gp~~set~~G--klslgakil~~GG~ekvFkq~F~~~~~EkLlka~~CYL 77 (184)
+.+|.-|+++....| +|..|||.|-|||+..|=|-.| ||--|.-.++=+|
T Consensus 345 Qk~K~hP~i~~vleGgk~i~YgARaLNEGGfQsiPkl~F---PGG~liGcSaGFl 396 (621)
T KOG2415|consen 345 QKMKHHPSISKVLEGGKRIAYGARALNEGGFQSIPKLVF---PGGALIGCSAGFL 396 (621)
T ss_pred HHhhcCcchhhhhcCcceeeehhhhhccCCcccCccccc---CCceEeecccccc
Confidence 456677999999988 7999999999999999876655 5555544444443
No 24
>PF12068 DUF3548: Domain of unknown function (DUF3548); InterPro: IPR021935 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes and is typically between 184 to 216 amino acids in length. The domain is found associated with PF00566 from PFAM and at the N terminus of GYP7 proteins.
Probab=46.07 E-value=27 Score=30.24 Aligned_cols=58 Identities=17% Similarity=0.166 Sum_probs=39.9
Q ss_pred eeeeEEEEEEecCcccccccCcccCCCCCceEEEEEecCceeeeeecccHHHHHHHHHHHHh
Q 037271 112 LIRVHYKVLIPLGKIKRVNQSVNMKKQSEKYIEVYTVDGFDFWFMGFLNYQKAFKYLQQAIS 173 (184)
Q Consensus 112 ~~~~~YKVvIPL~kik~vnps~n~~~p~eKYIqIvTvD~~eFWFMGFvnY~kA~k~Lq~a~~ 173 (184)
..+..|.+.|||..|+++.-+.... .-.||.++|-||.-| --+--++.-.+.|-++|+
T Consensus 107 ~~~~~~aFsv~lsdl~Si~~~~p~~--G~~~lv~~~kdG~~~--p~L~Fh~gg~~~fl~~L~ 164 (213)
T PF12068_consen 107 SSRSSYAFSVPLSDLKSIRVSKPSL--GWWYLVFILKDGTSL--PPLHFHDGGSKEFLKSLQ 164 (213)
T ss_pred CCCcceEEEEEhhheeeEEecCCCC--CceEEEEEecCCCcc--CceEEecCCHHHHHHHHH
Confidence 3467889999999999998843322 668999999999654 333334544555555554
No 25
>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown]
Probab=45.09 E-value=21 Score=35.10 Aligned_cols=92 Identities=25% Similarity=0.387 Sum_probs=64.6
Q ss_pred CCcchhhhhccceeeecCCCcceeeEEeeeceeEeeecCccceecCCCCeeeeEEEEEEecCcccccccCcccCCCCCce
Q 037271 63 VKEEEKLLKACQCYLSTTAGPIAGLLFISTEKVAFCSERSLKFYSSKGELIRVHYKVLIPLGKIKRVNQSVNMKKQSEKY 142 (184)
Q Consensus 63 ~~~~EkLlka~~CYLSTtaGPVaG~LfiSt~kvAFcSdrpl~~~~p~g~~~~~~YKVvIPL~kik~vnps~n~~~p~eKY 142 (184)
+.|+|+|+..+.|+|.-.= +.=|=+|||...|+|-|.- ..|. -|||||++.|..+.......-+ .-=
T Consensus 117 ~~~~~~l~~~~~cal~rei-llQGrmyis~~~icF~s~i----------~gw~-~~~vIpf~eI~~ikk~~tag~f-pn~ 183 (590)
T KOG1032|consen 117 VPDPEILLTDYSCALQREI-LLQGRMYISEEHICFNSNI----------FGWE-TKVVIPFDEITLIKKTKTAGIF-PNA 183 (590)
T ss_pred CCCcceeeeecchhhcccc-ccccccccccceeeecccc----------cCcc-ceeEEeeeeeeeeehhhhccCC-Ccc
Confidence 6788999999999998554 4568999999999887642 2233 5799999888777664422211 122
Q ss_pred EEEEEecCceeeeeecccHHHHHHHH
Q 037271 143 IEVYTVDGFDFWFMGFLNYQKAFKYL 168 (184)
Q Consensus 143 IqIvTvD~~eFWFMGFvnY~kA~k~L 168 (184)
|+|-|+..- +=|.+|++=|-+++..
T Consensus 184 i~i~t~~~k-y~f~s~~Srda~~~~~ 208 (590)
T KOG1032|consen 184 IEITTGTTK-YIFVSLLSRDATYKLI 208 (590)
T ss_pred eEEecCCCc-ceeeecccCccHHHHH
Confidence 555544444 4578999999999844
No 26
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=45.08 E-value=15 Score=25.06 Aligned_cols=14 Identities=29% Similarity=0.620 Sum_probs=11.9
Q ss_pred ceEEEEEecCceee
Q 037271 141 KYIEVYTVDGFDFW 154 (184)
Q Consensus 141 KYIqIvTvD~~eFW 154 (184)
+||.++|-||++|=
T Consensus 1 ~~v~L~SsDg~~f~ 14 (62)
T PF03931_consen 1 MYVKLVSSDGQEFE 14 (62)
T ss_dssp -EEEEEETTSEEEE
T ss_pred CEEEEEcCCCCEEE
Confidence 58999999999984
No 27
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=44.38 E-value=14 Score=22.29 Aligned_cols=15 Identities=40% Similarity=0.809 Sum_probs=12.1
Q ss_pred cHHHHHHHHHHHHhh
Q 037271 160 NYQKAFKYLQQAISQ 174 (184)
Q Consensus 160 nY~kA~k~Lq~a~~~ 174 (184)
+|++|..++++|+..
T Consensus 14 ~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 14 DYEKAIEYYEQALAL 28 (36)
T ss_dssp -HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 699999999997743
No 28
>PRK13708 plasmid maintenance protein CcdB; Provisional
Probab=41.72 E-value=40 Score=26.27 Aligned_cols=34 Identities=18% Similarity=0.324 Sum_probs=25.5
Q ss_pred EEEEEecCcccccccCc-ccCCCCCceEEEEEecCceeeee
Q 037271 117 YKVLIPLGKIKRVNQSV-NMKKQSEKYIEVYTVDGFDFWFM 156 (184)
Q Consensus 117 YKVvIPL~kik~vnps~-n~~~p~eKYIqIvTvD~~eFWFM 156 (184)
-+|||||-......+.. .+-|| ++++||.+|-.|
T Consensus 30 tRvViPL~~~~~~~~~~~~rL~P------~~~I~g~~~vl~ 64 (101)
T PRK13708 30 RRMVIPLASARLLSDKVSRELYP------VVHIGDESYRLM 64 (101)
T ss_pred ceEEEeCccHHHCCCCcCCCcCc------eEEECCeEEEEE
Confidence 46999999888877644 33444 788999999754
No 29
>PF01845 CcdB: CcdB protein; InterPro: IPR002712 CcdB protein is a topoisomerase poison from Escherichia coli []. It is responsible for killing plasmid-free segregants, and interferes with the activity of DNA gyrase. It acts to inhibit partitioning of the chromosomal DNA.; GO: 0008657 DNA topoisomerase (ATP-hydrolyzing) inhibitor activity, 0006276 plasmid maintenance; PDB: 2VUB_G 1VUB_D 3VUB_A 1X75_C 3HPW_B 4VUB_A 4ELZ_D 2KMT_B 4ELY_C 3JRZ_A ....
Probab=41.36 E-value=42 Score=25.85 Aligned_cols=35 Identities=20% Similarity=0.464 Sum_probs=24.3
Q ss_pred EEEEEEecCcccccc-cCcccCCCCCceEEEEEecCceeeee
Q 037271 116 HYKVLIPLGKIKRVN-QSVNMKKQSEKYIEVYTVDGFDFWFM 156 (184)
Q Consensus 116 ~YKVvIPL~kik~vn-ps~n~~~p~eKYIqIvTvD~~eFWFM 156 (184)
...|||||-...... +...+-|| ++++||.+|-.|
T Consensus 30 ~tRvVvPL~~~~~~~~~~~~~L~P------~~~i~g~~~vl~ 65 (102)
T PF01845_consen 30 NTRVVVPLLPLSNLPGKPPRRLNP------VFEIEGEDYVLM 65 (102)
T ss_dssp SEEEEEEEEEGGGTSSTS-TTTS-------EEEETTEEEEE-
T ss_pred CcEEEEecCchhhcCcccCCceee------EEEECCEEEEEE
Confidence 367999999888775 44444444 789999998654
No 30
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=40.57 E-value=66 Score=22.67 Aligned_cols=39 Identities=18% Similarity=0.300 Sum_probs=26.2
Q ss_pred EEEEecCccc-ccccCcccCCCCCceEEEEEecCceeeeeeccc
Q 037271 118 KVLIPLGKIK-RVNQSVNMKKQSEKYIEVYTVDGFDFWFMGFLN 160 (184)
Q Consensus 118 KVvIPL~kik-~vnps~n~~~p~eKYIqIvTvD~~eFWFMGFvn 160 (184)
||.||.+.-+ .++++-.. -+|+.|+.+|+....+...+.
T Consensus 2 ~IAv~~~~~~~~v~~hFg~----a~~f~i~d~~~~~~~~~~~~~ 41 (103)
T cd00851 2 KIAIPVSGNGGKVSPHFGR----APYFLIYDVETGKIKNVEVIE 41 (103)
T ss_pred EEEEEecCCCccccCcccc----CCEEEEEEccCCcEeEEEEec
Confidence 6777777766 56664433 367888888887766666554
No 31
>TIGR02681 phage_pRha phage regulatory protein, rha family. Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that pRha is a phage regulatory protein.
Probab=40.38 E-value=35 Score=26.34 Aligned_cols=31 Identities=26% Similarity=0.506 Sum_probs=26.3
Q ss_pred EEEecCceeeeeec---------ccHHHHHHHHHHHHhhc
Q 037271 145 VYTVDGFDFWFMGF---------LNYQKAFKYLQQAISQS 175 (184)
Q Consensus 145 IvTvD~~eFWFMGF---------vnY~kA~k~Lq~a~~~~ 175 (184)
.+|-||+.+--||| ..|-++|+.+++.|++-
T Consensus 68 ~ltkdgf~lLvmg~tg~ka~~fK~~yI~~Fn~ME~~l~~~ 107 (108)
T TIGR02681 68 NLTEDGFTIVAMGYTTPKAMKMKEKFIKEFNEMKEHLQKV 107 (108)
T ss_pred EEcCCceEEEEecCChHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 35999999999999 46888999999998653
No 32
>PF09890 DUF2117: Uncharacterized protein conserved in archaea (DUF2117); InterPro: IPR012032 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=33.36 E-value=16 Score=32.08 Aligned_cols=63 Identities=24% Similarity=0.420 Sum_probs=43.1
Q ss_pred hhcch---hhhhhhhhhhcccCCChhHHHhhhhccccchhhccChheehhhhccCCcchhhhhccceeeecCCCcceee
Q 037271 12 LGKRA---DNFASGVKEHVRLGPKITETVKGKLSLGAKILQVGGMEKIFKQLFAVKEEEKLLKACQCYLSTTAGPIAGL 87 (184)
Q Consensus 12 ~~rKa---e~~a~~i~~h~k~gp~~set~~Gklslgakil~~GG~ekvFkq~F~~~~~EkLlka~~CYLSTtaGPVaG~ 87 (184)
|.+++ +.+|..+.+|+.+- +++-+.--++.+...- +|+ .++||...++.|||.+. =.|-|.|.
T Consensus 49 Wn~~~~~~~~~a~~Ls~~l~l~--i~~p~~~~i~~~~~~~-~~~-~~v~R~i~Gv~pGE~I~---------VNGiVIG~ 114 (215)
T PF09890_consen 49 WNKKAEEVEPIAEKLSELLGLK--IVRPVENPISSGENCW-EGK-GRVFRKISGVSPGENIF---------VNGIVIGR 114 (215)
T ss_pred ccccccchHHHHHHHHHHhCCC--ccCcccccccCccccc-cCC-ceEEEEEeccCCCCCEE---------EeeEEEEE
Confidence 66777 89999999998885 2221333333443322 333 78999999999999875 36777776
No 33
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=33.25 E-value=77 Score=22.22 Aligned_cols=40 Identities=15% Similarity=0.136 Sum_probs=26.6
Q ss_pred EEEEecCcccccccCcccCCCCCceEEEEEecCceeeeeecccH
Q 037271 118 KVLIPLGKIKRVNQSVNMKKQSEKYIEVYTVDGFDFWFMGFLNY 161 (184)
Q Consensus 118 KVvIPL~kik~vnps~n~~~p~eKYIqIvTvD~~eFWFMGFvnY 161 (184)
||.||...-+.|+++-.. -+|+.|+.+|+.++++...+.-
T Consensus 1 kIAi~~~~~~~v~~hFg~----A~~f~I~d~~~~~~~~~e~~~n 40 (102)
T cd00562 1 KIAVASSDGGRVDQHFGR----APEFLIYEVEPGGIKLVEVREN 40 (102)
T ss_pred CEEEEcCCCCEehhhcCC----CCeEEEEEEcCCcEEEEEEEec
Confidence 467777666666665443 3678888888887777666543
No 34
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=31.04 E-value=48 Score=19.25 Aligned_cols=15 Identities=47% Similarity=0.873 Sum_probs=13.0
Q ss_pred cHHHHHHHHHHHHhh
Q 037271 160 NYQKAFKYLQQAISQ 174 (184)
Q Consensus 160 nY~kA~k~Lq~a~~~ 174 (184)
++++|++++++|.++
T Consensus 23 d~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 23 DYEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred cccchHHHHHHHHHc
Confidence 689999999999764
No 35
>cd00852 NifB NifB belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme as part of nitrogen fixation in bacteria. This domain is sometimes found fused to a N-terminal domain (the Radical SAM domain) in nifB-like proteins.
Probab=30.75 E-value=93 Score=22.72 Aligned_cols=41 Identities=22% Similarity=0.231 Sum_probs=27.0
Q ss_pred EEEEecCcccccccCcccCCCCCceEEEEEecCceeeeeecccHH
Q 037271 118 KVLIPLGKIKRVNQSVNMKKQSEKYIEVYTVDGFDFWFMGFLNYQ 162 (184)
Q Consensus 118 KVvIPL~kik~vnps~n~~~p~eKYIqIvTvD~~eFWFMGFvnY~ 162 (184)
||.||...-..|+++--+- +|.-|+.+|+.+++|+......
T Consensus 1 kIAv~s~~~~~V~~HFG~a----~~F~Iydv~~~~~~~ve~~~~~ 41 (106)
T cd00852 1 LVAVASKGGGRVNQHFGHA----TEFQIYEVSGSGVKFVEHRKVD 41 (106)
T ss_pred CEEEECCCCCEehhhccCC----CEEEEEEEcCCcEEEEEEeecC
Confidence 4555654444566655443 6788888888888888776543
No 36
>cd08544 Reeler Reeler, the N-terminal domain of reelin, F-spondin, and a variety of other proteins. This domain is found at the N-terminus of F-spondin, a protein attached to the extracellular matrix, which plays roles in neuronal development and vascular remodelling. The F-spondin reeler domain has been reported to bind heparin. The reeler domain is also found at the N-terminus of reelin, an extracellular glycoprotein involved in the development of the brain cortex, and in a variety of other eukaryotic proteins with different domain architectures, including the animal ferric-chelate reductase 1 or stromal cell-derived receptor 2, a member of the cytochrome B561 family, which reduces ferric iron before its transport from the endosome to the cytoplasm. Also included is the insect putative defense protein 1, which is expressed upon bacterial infection and appears to contain a single reeler domain.
Probab=29.98 E-value=84 Score=23.95 Aligned_cols=34 Identities=24% Similarity=0.221 Sum_probs=24.7
Q ss_pred eEEEEEEecCcccccccCcccCCCCCceEEEEEecCceeeeeecc
Q 037271 115 VHYKVLIPLGKIKRVNQSVNMKKQSEKYIEVYTVDGFDFWFMGFL 159 (184)
Q Consensus 115 ~~YKVvIPL~kik~vnps~n~~~p~eKYIqIvTvD~~eFWFMGFv 159 (184)
.+|.|.++-. ...|.|.|---++..+- -.|.||+
T Consensus 19 ~py~i~~~~~----------~y~pG~~~~Vtl~~~~~-~~F~GF~ 52 (135)
T cd08544 19 SPYSITISGN----------SYVPGETYTVTLSGSSP-SPFRGFL 52 (135)
T ss_pred CCEEEEeCCC----------EECCCCEEEEEEECCCC-CceeEEE
Confidence 7899988765 46688888655555444 6899997
No 37
>KOG3294 consensus WW domain binding protein WBP-2, contains GRAM domain [Signal transduction mechanisms]
Probab=27.87 E-value=45 Score=30.19 Aligned_cols=40 Identities=20% Similarity=0.515 Sum_probs=27.0
Q ss_pred CcceeeEEeeeceeEeeecCccceecCCCCeeeeEEEEEEecCccccccc
Q 037271 82 GPIAGLLFISTEKVAFCSERSLKFYSSKGELIRVHYKVLIPLGKIKRVNQ 131 (184)
Q Consensus 82 GPVaG~LfiSt~kvAFcSdrpl~~~~p~g~~~~~~YKVvIPL~kik~vnp 131 (184)
|=--|+||+++.||-|-|+.+-.-. --.++|+.-++.++-
T Consensus 45 g~kkGtlyLTs~RiIFis~~~~D~f----------ksF~MPf~~mkd~kl 84 (261)
T KOG3294|consen 45 GTKKGTLYLTSHRIIFISSKPKDAF----------KSFMMPFNLMKDVKL 84 (261)
T ss_pred cceeeeEEeecceEEEecCCCCcch----------hhhcchhhhhhhcee
Confidence 3456999999999999998752211 114667776666543
No 38
>PF03517 Voldacs: Regulator of volume decrease after cellular swelling; InterPro: IPR003521 The nucleotide-sensitive chloride conductance regulatory protein (ICln) is found ubiquitously in mammalian (and other) cell types and is postulated to play a critical role in cell volume regulation. Initial studies proposed that ICln was itself a swelling-activated anion channel; however, further studies demonstrated that it is localised primarily to the cell cytoplasm. It has therefore been postulated that activation of cell volume regulation may involve reversible translocation of ICln from the cytoplasm, and its insertion into the plasma membrane. It is not resolved whether the anionic channel involved in cell volume regulation after cell-swelling comprises one or more subunits, and if it does, whether ICln is in fact one of them [].; GO: 0006821 chloride transport, 0006884 cell volume homeostasis; PDB: 1ZYI_A.
Probab=27.77 E-value=46 Score=26.17 Aligned_cols=15 Identities=20% Similarity=0.638 Sum_probs=13.6
Q ss_pred eeEEeeeceeEeeec
Q 037271 86 GLLFISTEKVAFCSE 100 (184)
Q Consensus 86 G~LfiSt~kvAFcSd 100 (184)
|.|||.+.+|.+-|+
T Consensus 1 g~L~Vt~~~l~w~~~ 15 (135)
T PF03517_consen 1 GTLYVTESRLIWFSN 15 (135)
T ss_dssp EEEEEETTEEEEEET
T ss_pred CEEEEecCEEEEECC
Confidence 899999999999883
No 39
>COG1098 VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]
Probab=27.00 E-value=26 Score=28.75 Aligned_cols=36 Identities=31% Similarity=0.654 Sum_probs=30.2
Q ss_pred hcchhhhhhhhhhhcccCCCh-------hHHHhhhhccccchhhc
Q 037271 13 GKRADNFASGVKEHVRLGPKI-------TETVKGKLSLGAKILQV 50 (184)
Q Consensus 13 ~rKae~~a~~i~~h~k~gp~~-------set~~Gklslgakil~~ 50 (184)
+.=|++++.+|-+||+.|..+ .| .||+||--|-+.+
T Consensus 36 SEIa~~fVkdI~d~L~vG~eV~vKVl~ide--~GKisLSIr~~~e 78 (129)
T COG1098 36 SEIADGFVKDIHDHLKVGQEVKVKVLDIDE--NGKISLSIRKLEE 78 (129)
T ss_pred hHhhhhhHHhHHHHhcCCCEEEEEEEeecc--CCCcceehHHhhh
Confidence 356899999999999999754 44 8999999998876
No 40
>smart00252 SH2 Src homology 2 domains. Src homology 2 domains bind phosphotyrosine-containing polypeptides via 2 surface pockets. Specificity is provided via interaction with residues that are distinct from the phosphotyrosine. Only a single occurrence of a SH2 domain has been found in S. cerevisiae.
Probab=26.33 E-value=41 Score=23.13 Aligned_cols=18 Identities=33% Similarity=0.820 Sum_probs=16.5
Q ss_pred eeeecccHHHHHHHHHHH
Q 037271 154 WFMGFLNYQKAFKYLQQA 171 (184)
Q Consensus 154 WFMGFvnY~kA~k~Lq~a 171 (184)
||.|+++=+.|-+.|++.
T Consensus 3 w~~g~i~r~~Ae~lL~~~ 20 (84)
T smart00252 3 WYHGFISREEAEKLLKNE 20 (84)
T ss_pred eecccCCHHHHHHHHhcC
Confidence 999999999999999873
No 41
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=25.48 E-value=62 Score=20.87 Aligned_cols=16 Identities=31% Similarity=0.750 Sum_probs=12.9
Q ss_pred cHHHHHHHHHHHHhhc
Q 037271 160 NYQKAFKYLQQAISQS 175 (184)
Q Consensus 160 nY~kA~k~Lq~a~~~~ 175 (184)
+|++|++++++||+..
T Consensus 18 ~~~~A~~~~~~ai~~~ 33 (69)
T PF13414_consen 18 DYEEAIEYFEKAIELD 33 (69)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHcC
Confidence 5888999999988753
No 42
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=24.66 E-value=66 Score=21.33 Aligned_cols=15 Identities=27% Similarity=0.665 Sum_probs=12.8
Q ss_pred cHHHHHHHHHHHHhh
Q 037271 160 NYQKAFKYLQQAISQ 174 (184)
Q Consensus 160 nY~kA~k~Lq~a~~~ 174 (184)
.|++|+.++++|+..
T Consensus 20 ~~~~A~~~~~~al~~ 34 (78)
T PF13424_consen 20 RYDEALDYYEKALDI 34 (78)
T ss_dssp -HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 689999999999975
No 43
>TIGR03884 sel_bind_Methan selenium-binding protein. This model describes a homopentameric selenium-binding protein with a suggested role in selenium transport and delivery to selenophosphate synthase, the SelD protein. This protein family is closely related to pfam01906, but is shorter because of several deleted regions. It is restricted to the archaeal genus Methanococcus.
Probab=24.53 E-value=1.4e+02 Score=22.38 Aligned_cols=31 Identities=10% Similarity=0.191 Sum_probs=25.7
Q ss_pred ceEEEEEecCceeeeeecccHHHHHHHHHHHHhhcCCCC
Q 037271 141 KYIEVYTVDGFDFWFMGFLNYQKAFKYLQQAISQSCTDD 179 (184)
Q Consensus 141 KYIqIvTvD~~eFWFMGFvnY~kA~k~Lq~a~~~~~~~~ 179 (184)
+|+.||+.-++ +=|+|++.|.+.-++...+.
T Consensus 15 ~yl~iv~~~~~--------d~d~Al~eM~e~A~~lGAnA 45 (74)
T TIGR03884 15 YYLGIVSTESD--------NVDEIVENLREKVKAKGGMG 45 (74)
T ss_pred EEEEEEEEecC--------CHHHHHHHHHHHHHHcCCCE
Confidence 79999998888 78999999998777665554
No 44
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=24.38 E-value=95 Score=17.01 Aligned_cols=16 Identities=31% Similarity=0.692 Sum_probs=13.4
Q ss_pred cHHHHHHHHHHHHhhc
Q 037271 160 NYQKAFKYLQQAISQS 175 (184)
Q Consensus 160 nY~kA~k~Lq~a~~~~ 175 (184)
+|++|.+.|++.+.+.
T Consensus 15 ~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 15 DYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHC
Confidence 6889999999998765
No 45
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=24.16 E-value=83 Score=20.11 Aligned_cols=17 Identities=24% Similarity=0.561 Sum_probs=13.8
Q ss_pred cHHHHHHHHHHHHhhcC
Q 037271 160 NYQKAFKYLQQAISQSC 176 (184)
Q Consensus 160 nY~kA~k~Lq~a~~~~~ 176 (184)
+|+.|++.|+++++...
T Consensus 6 ~~~~A~~~~~~~l~~~p 22 (68)
T PF14559_consen 6 DYDEAIELLEKALQRNP 22 (68)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHCC
Confidence 58899999999987653
No 46
>PF08909 DUF1854: Domain of unknown function (DUF1854); InterPro: IPR015005 These protein is functionally uncharacterised. It is found at the C terminus of a number of ATP transporter proteins suggesting it may be involved in ligand binding.
Probab=24.01 E-value=58 Score=26.57 Aligned_cols=36 Identities=14% Similarity=0.360 Sum_probs=24.6
Q ss_pred CCceEEEEEecCce-eeeeecccHHH-HHHHHHHHHhh
Q 037271 139 SEKYIEVYTVDGFD-FWFMGFLNYQK-AFKYLQQAISQ 174 (184)
Q Consensus 139 ~eKYIqIvTvD~~e-FWFMGFvnY~k-A~k~Lq~a~~~ 174 (184)
.+.||-+++.||+| +|.=-.=--+. +.+.++++|..
T Consensus 17 P~~~isl~~~~G~El~~I~~l~~L~~~~r~lle~eLa~ 54 (133)
T PF08909_consen 17 PDEGISLVDEDGHELAWIDDLDDLPEESRALLEEELAR 54 (133)
T ss_pred CCccEEEEcCCCcEEEEEcChhHCCHHHHHHHHHHHHh
Confidence 46799999999999 88765443333 34555666643
No 47
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=23.84 E-value=48 Score=19.83 Aligned_cols=11 Identities=27% Similarity=0.428 Sum_probs=9.0
Q ss_pred eceeEeeecCc
Q 037271 92 TEKVAFCSERS 102 (184)
Q Consensus 92 t~kvAFcSdrp 102 (184)
.++|+|+|+|+
T Consensus 20 Gk~i~f~s~~~ 30 (39)
T PF07676_consen 20 GKYIYFTSNRN 30 (39)
T ss_dssp SSEEEEEEECT
T ss_pred CCEEEEEecCC
Confidence 36899999987
No 48
>PF10756 bPH_6: Bacterial PH domain; InterPro: IPR019692 Proteins in this entry are conserved in the Actinomycetales. Although several members are annotated as RbiX homologues, RbiX being a putative regulator of riboflavin biosynthesis, the function could not be confirmed. This entry also includes low molecular weight protein antigen 6.
Probab=23.70 E-value=68 Score=22.24 Aligned_cols=37 Identities=14% Similarity=0.180 Sum_probs=31.0
Q ss_pred EEEEEecCcccccccCcccCCCCCceEEEEEecCceeeeeec
Q 037271 117 YKVLIPLGKIKRVNQSVNMKKQSEKYIEVYTVDGFDFWFMGF 158 (184)
Q Consensus 117 YKVvIPL~kik~vnps~n~~~p~eKYIqIvTvD~~eFWFMGF 158 (184)
-...||.++|..|.- .+..+++.+.+.|+..++|||.
T Consensus 18 rt~~vpW~~I~~v~~-----~~~~~~v~~~~~dg~~~~l~~~ 54 (73)
T PF10756_consen 18 RTRRVPWSEIAGVRF-----RRGRRWVRLDLRDGRLVPLPAV 54 (73)
T ss_pred eeEEEChHHeEEEEc-----cCCceEEEEECCCCCEEEEeeE
Confidence 446799999999883 4666779999999999999985
No 49
>KOG0937 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.28 E-value=1e+02 Score=29.71 Aligned_cols=49 Identities=22% Similarity=0.375 Sum_probs=38.1
Q ss_pred EeeecCccceecCCCCeeeeEEEEEEecCcccccccCcccCCCCCceEEEE
Q 037271 96 AFCSERSLKFYSSKGELIRVHYKVLIPLGKIKRVNQSVNMKKQSEKYIEVY 146 (184)
Q Consensus 96 AFcSdrpl~~~~p~g~~~~~~YKVvIPL~kik~vnps~n~~~p~eKYIqIv 146 (184)
+|-+||-|+|.+|+|+..=+.|..--++.-+..+.....+ .++=-|||.
T Consensus 245 ~fd~dr~i~FiPPdGeF~Lm~Y~ls~~vkPli~~~~~~~~--~~~~ri~i~ 293 (424)
T KOG0937|consen 245 RFDNDRTISFIPPDGEFELMRYRLSTHVKPLIWFYQLIEE--HSRSRIEVM 293 (424)
T ss_pred hccCCceEEecCCCCceEEEEEEecCCCCCeEEeeeeeee--ccceeEEEE
Confidence 6889999999999999999999988888888777775554 333344444
No 50
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=23.23 E-value=81 Score=17.84 Aligned_cols=16 Identities=25% Similarity=0.451 Sum_probs=13.5
Q ss_pred ccHHHHHHHHHHHHhh
Q 037271 159 LNYQKAFKYLQQAISQ 174 (184)
Q Consensus 159 vnY~kA~k~Lq~a~~~ 174 (184)
.++++|++++++|..+
T Consensus 19 ~d~~~A~~~~~~Aa~~ 34 (36)
T smart00671 19 KDLEKALEYYKKAAEL 34 (36)
T ss_pred cCHHHHHHHHHHHHHc
Confidence 4789999999999764
No 51
>PF03708 Avian_gp85: Avian retrovirus envelope protein, gp85 ; InterPro: IPR005166 A family of a vain specific viral glycoproteins that forms a receptor-binding Gp95 polypeptide that is linked through disulphide to a membrane-spanning gp37 spike. Gp95 confers a high degree of subgroup specificity for interaction with distinct cell receptors [].; GO: 0019031 viral envelope
Probab=22.78 E-value=62 Score=29.06 Aligned_cols=24 Identities=38% Similarity=0.560 Sum_probs=17.2
Q ss_pred cccCcccCCCCCceEEEEEecCceeeeee
Q 037271 129 VNQSVNMKKQSEKYIEVYTVDGFDFWFMG 157 (184)
Q Consensus 129 vnps~n~~~p~eKYIqIvTvD~~eFWFMG 157 (184)
+|++.|...| +.|||.|-|.| |||
T Consensus 73 ~n~~~n~~~P----ftvvtadr~nl-f~g 96 (256)
T PF03708_consen 73 FNSSSNSTEP----FTVVTADRHNL-FMG 96 (256)
T ss_pred ccccccccCC----eEEeeccccce-eec
Confidence 4455555555 89999999987 665
No 52
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=22.69 E-value=98 Score=19.06 Aligned_cols=17 Identities=18% Similarity=0.198 Sum_probs=14.8
Q ss_pred cHHHHHHHHHHHHhhcC
Q 037271 160 NYQKAFKYLQQAISQSC 176 (184)
Q Consensus 160 nY~kA~k~Lq~a~~~~~ 176 (184)
++++|.+.|+++++..-
T Consensus 16 ~~~~A~~~~~~~l~~~P 32 (44)
T PF13428_consen 16 QPDEAERLLRRALALDP 32 (44)
T ss_pred CHHHHHHHHHHHHHHCc
Confidence 68999999999998754
No 53
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=22.41 E-value=87 Score=17.90 Aligned_cols=16 Identities=25% Similarity=0.569 Sum_probs=12.9
Q ss_pred cHHHHHHHHHHHHhhc
Q 037271 160 NYQKAFKYLQQAISQS 175 (184)
Q Consensus 160 nY~kA~k~Lq~a~~~~ 175 (184)
.|++|.+++++|+.-.
T Consensus 17 ~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 17 RYEEALELLEEALEIR 32 (42)
T ss_dssp -HHHHHHHHHHHHHHH
T ss_pred hcchhhHHHHHHHHHH
Confidence 6899999999998643
No 54
>TIGR01280 xseB exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides.
Probab=22.27 E-value=84 Score=22.41 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=18.0
Q ss_pred ccHHHHHHHHHHHHhhcCCCCc
Q 037271 159 LNYQKAFKYLQQAISQSCTDDV 180 (184)
Q Consensus 159 vnY~kA~k~Lq~a~~~~~~~~~ 180 (184)
++|+.|++.|++.+++-.++++
T Consensus 1 ~sfEe~l~~Le~Iv~~LE~~~l 22 (67)
T TIGR01280 1 LSFEEALSELEQIVQKLESGDL 22 (67)
T ss_pred CCHHHHHHHHHHHHHHHHCCCC
Confidence 4799999999999988766664
No 55
>PF08348 PAS_6: YheO-like PAS domain; InterPro: IPR013559 This domain is found in various hypothetical bacterial proteins that are similar to the Escherichia coli protein YheO (P64624 from SWISSPROT). Their function is unknown, but a few members are annotated as being HTH-containing proteins and putative DNA-binding proteins.
Probab=21.70 E-value=1.2e+02 Score=23.52 Aligned_cols=58 Identities=19% Similarity=0.358 Sum_probs=44.1
Q ss_pred ccCCChhHHHhhhhccccchhhccC-hheehhhhccCCcchhhhhccceeeecCCCcceeeEEeee
Q 037271 28 RLGPKITETVKGKLSLGAKILQVGG-MEKIFKQLFAVKEEEKLLKACQCYLSTTAGPIAGLLFIST 92 (184)
Q Consensus 28 k~gp~~set~~Gklslgakil~~GG-~ekvFkq~F~~~~~EkLlka~~CYLSTtaGPVaG~LfiSt 92 (184)
+.|..+++. +-++|+++. -+..+..++...++-|++|++-.++--..|=+.|+|=|-.
T Consensus 46 ~vGdp~t~~-------~l~~l~~~~~~~~~~~nY~~~~~~Gk~lrSsT~~Ird~~g~~iG~LCIN~ 104 (118)
T PF08348_consen 46 KVGDPITDL-------ALELLKEKQYEEDYIINYKTKTKDGKILRSSTFFIRDENGKLIGALCINF 104 (118)
T ss_pred ccCCchhHH-------HHHHHhccccCCCccccccccCCCCCEEEEEEEEEECCCCCEEEEEEEEe
Confidence 455555554 446677766 4666777788888889999999999999999999987753
No 56
>cd01178 IPT_NFAT IPT domain of the NFAT family of transcription factors. NFAT transcription complexes are a target of calcineurin, a calcium dependent phosphatase, and activate genes mainly involved in cell-cell-interaction.
Probab=21.21 E-value=93 Score=24.33 Aligned_cols=72 Identities=13% Similarity=0.073 Sum_probs=48.0
Q ss_pred ceeeecCCCcceee--EEeeeceeEeeecCcccee--cCCCCeeeeEEEEEEecCccccc--------ccCcccCCCCCc
Q 037271 74 QCYLSTTAGPIAGL--LFISTEKVAFCSERSLKFY--SSKGELIRVHYKVLIPLGKIKRV--------NQSVNMKKQSEK 141 (184)
Q Consensus 74 ~CYLSTtaGPVaG~--LfiSt~kvAFcSdrpl~~~--~p~g~~~~~~YKVvIPL~kik~v--------nps~n~~~p~eK 141 (184)
.|=+|.++|+|.|- |||+-+|| .-|--+-|. .++|+..|--+=-+-+ +.++.+ -...+...|-+=
T Consensus 4 I~r~s~~s~sv~GG~Ev~Ll~~k~--~kDikV~F~E~~~dG~~~WE~~a~f~~-~~~hQ~aIvf~tPpY~~~~I~~pV~V 80 (101)
T cd01178 4 IEKKSLNSCSVNGGEELFLTGKNF--LKDSKVVFQEKGQDGEAQWEAEATIDK-EKSHQNHLVVEVPPYHNKHVAAPVQV 80 (101)
T ss_pred eEEeccCceeecCCCEEEEEehhc--CCCCEEEEEEeCCCCccceEEEEEeCh-HhceeeeEEEecCCCCCCCcCCceEE
Confidence 48899999999995 89999996 568777787 5788888764433322 222211 012345567777
Q ss_pred eEEEEEe
Q 037271 142 YIEVYTV 148 (184)
Q Consensus 142 YIqIvTv 148 (184)
.|++++-
T Consensus 81 ~~~l~~~ 87 (101)
T cd01178 81 QFYVVNG 87 (101)
T ss_pred EEEEEcC
Confidence 7887764
No 57
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=21.08 E-value=1e+02 Score=18.45 Aligned_cols=17 Identities=18% Similarity=0.368 Sum_probs=12.1
Q ss_pred cHHHHHHHHHHHHhhcC
Q 037271 160 NYQKAFKYLQQAISQSC 176 (184)
Q Consensus 160 nY~kA~k~Lq~a~~~~~ 176 (184)
+|++|.+++++++....
T Consensus 49 ~~~~a~~~~~~~~~~~~ 65 (100)
T cd00189 49 KYEEALEDYEKALELDP 65 (100)
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 46778888888776543
No 58
>PF14472 DUF4429: Domain of unknown function (DUF4429)
Probab=21.07 E-value=1.3e+02 Score=22.25 Aligned_cols=30 Identities=30% Similarity=0.398 Sum_probs=22.1
Q ss_pred EEEecCcccccccCcccCCCC---CceEEEEEecCce
Q 037271 119 VLIPLGKIKRVNQSVNMKKQS---EKYIEVYTVDGFD 152 (184)
Q Consensus 119 VvIPL~kik~vnps~n~~~p~---eKYIqIvTvD~~e 152 (184)
..|||..|..|.= +.|. .=||+++..+|-+
T Consensus 27 ~~ipl~~i~gV~~----~~pg~~~~G~Lrf~~~~g~~ 59 (94)
T PF14472_consen 27 KTIPLSAISGVEW----KPPGGLTNGYLRFVLRGGAD 59 (94)
T ss_pred EEEEHHHcceEEE----EcCCceeEEEEEEEECCcCc
Confidence 5799999999986 3344 3489998877543
No 59
>cd00271 Chemokine_C Chemokine_C, C or lymphotactin subgroup, 1 of 4 subgroup designations of chemokines based on the arrangement of two N-terminal, conserved cysteine residues. Most of the known chemokines (cd00169) belong to either the CC (cd00272) or CXC (cd00273) subclass. The two other subclasses each have a single known member: fractalkine for the CX3C (cd00274) class and lymphotactin for the C (cd00271) class. Chemokine_Cs differ structurally since they contain only one of the two disulfide bridges that are conserved in all other chemokines and they possess a unique C-terminal extension, which is required for biological activity and thought to play a role in receptor binding. Lymphotactin, a mediator of mucosal immunity, has been found to chemoattract neutrophils and B cells through the XCR1 receptor and thought to be a factor in acute allograft rejection and inflammatory bowel disease.
Probab=21.00 E-value=1.1e+02 Score=22.20 Aligned_cols=30 Identities=17% Similarity=0.546 Sum_probs=22.8
Q ss_pred hccceeeecCCCcceeeEEeeeceeEeeecC
Q 037271 71 KACQCYLSTTAGPIAGLLFISTEKVAFCSER 101 (184)
Q Consensus 71 ka~~CYLSTtaGPVaG~LfiSt~kvAFcSdr 101 (184)
+-..+|--| .+|+.+++|..-+.--+|+|-
T Consensus 22 ~~I~sY~~q-~~~~~AVIF~Tkkgr~iCadP 51 (72)
T cd00271 22 QKIKTYTIK-EGSVRAVIFITKRGLKICADP 51 (72)
T ss_pred hHccEEEEC-CCCCCeEEEEecCCCEEeCCC
Confidence 455677775 478999999988777788774
No 60
>PF08512 Rtt106: Histone chaperone Rttp106-like; InterPro: IPR013719 This is a domain of unknown function that is associated with a number of different protein families. It is found in Rtt106p, which is a histone chaperone involved in heterochromatin-mediated silencing []. It is also found in genes annotated as transcription factors/regulators. This domain is the C-terminal domain of yeast Spt16p P32558 from SWISSPROT, which is a subunit of the heterodimeric yeast FACT complex (Spt16p-Pob3p, IPR000969 from INTERPRO) []. In addition Spt16p and its relatives, in this entry, are described as non-peptidase homologues belonging to the MEROPS peptidase family M24. The FACT complex facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, ]. ; PDB: 3TW1_A 3GYO_A 3TO1_A 3FSS_A 3TVV_B 3GYP_A 2GCJ_D 2GCL_A.
Probab=20.79 E-value=3.5e+02 Score=19.92 Aligned_cols=60 Identities=25% Similarity=0.277 Sum_probs=39.4
Q ss_pred CcceeeEEeeeceeEeeecCccceecCCCCeeeeEEEEEEecCcccccccCcccCCCCCceEE--EEEec--Cceeeeee
Q 037271 82 GPIAGLLFISTEKVAFCSERSLKFYSSKGELIRVHYKVLIPLGKIKRVNQSVNMKKQSEKYIE--VYTVD--GFDFWFMG 157 (184)
Q Consensus 82 GPVaG~LfiSt~kvAFcSdrpl~~~~p~g~~~~~~YKVvIPL~kik~vnps~n~~~p~eKYIq--IvTvD--~~eFWFMG 157 (184)
|.-.|.||....-+.|-.++|. .+||++.|..|+=+-- ...+.|.-. |++-| +-+..|.+
T Consensus 9 ka~~g~L~pl~~~l~f~~~kP~---------------~~i~~~dI~~v~feRv-~~~~~ktFDl~v~~k~~~~~~~~fs~ 72 (95)
T PF08512_consen 9 KANEGFLYPLEKCLLFGLEKPP---------------FVIPLDDIESVEFERV-SSFSSKTFDLVVILKDYEGPPHEFSS 72 (95)
T ss_dssp TTEEEEEEEESSEEEEECSSS----------------EEEEGGGEEEEEEE---ESSSSSEEEEEEEETT-TS-EEEEEE
T ss_pred cccCEEEEEccceEEEecCCCe---------------EEEEhhHeeEEEEEec-ccCcceEEEEEEEEecCCCCcEEEee
Confidence 4456799998888888666664 5688999888887443 456667644 45555 56777665
No 61
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=20.77 E-value=73 Score=23.39 Aligned_cols=20 Identities=35% Similarity=0.473 Sum_probs=15.7
Q ss_pred ceEEEEEecCceeeeeecccHHHH
Q 037271 141 KYIEVYTVDGFDFWFMGFLNYQKA 164 (184)
Q Consensus 141 KYIqIvTvD~~eFWFMGFvnY~kA 164 (184)
+||.++|-||++|= |...-|
T Consensus 2 ~~v~L~S~Dg~~f~----v~~~~a 21 (104)
T smart00512 2 KYIKLISSDGEVFE----VEREVA 21 (104)
T ss_pred CeEEEEeCCCCEEE----ecHHHH
Confidence 68999999999983 455544
Done!