Query 037271
Match_columns 184
No_of_seqs 114 out of 133
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 17:56:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037271.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037271hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zsq_A Myotubularin-related pr 93.4 0.28 9.7E-06 45.8 8.7 102 61-174 7-112 (528)
2 1lw3_A Myotubularin-related pr 91.3 0.62 2.1E-05 44.8 8.3 120 41-173 60-183 (657)
3 2hth_B Vacuolar protein sortin 86.2 0.86 3E-05 35.3 4.5 51 81-143 35-85 (140)
4 2yf0_A Myotubularin-related pr 83.7 5.4 0.00018 37.1 9.3 79 77-173 18-96 (512)
5 2cay_A VPS36 PH domain, vacuol 78.3 1.7 6E-05 33.9 3.5 48 81-139 48-95 (145)
6 1vcb_B Protein (elongin C); tu 48.3 6.7 0.00023 29.0 1.4 20 136-155 12-31 (112)
7 4ag4_A Epithelial discoidin do 45.8 11 0.00038 33.3 2.6 59 67-125 250-315 (351)
8 2d9z_A Protein kinase C, NU ty 45.0 13 0.00046 29.1 2.7 43 112-157 43-89 (129)
9 1zyi_A Methylosome subunit pic 43.5 22 0.00076 28.6 3.9 29 73-102 32-60 (171)
10 1hv2_A Elongin C, ELC1; protei 41.8 13 0.00043 26.7 1.9 17 139-155 2-18 (99)
11 2coa_A Protein kinase C, D2 ty 39.9 20 0.0007 27.8 3.0 41 112-154 43-87 (125)
12 1pfj_A TFIIH basal transcripti 39.4 77 0.0026 23.9 6.1 76 86-176 22-104 (108)
13 2fnj_C Transcription elongatio 37.5 13 0.00044 26.4 1.4 15 141-155 1-15 (96)
14 2kq8_A Cell WALL hydrolase; GF 34.4 6.6 0.00022 26.2 -0.5 23 25-47 12-34 (70)
15 4ajy_C Transcription elongatio 32.9 17 0.00057 25.5 1.4 14 142-155 3-16 (97)
16 2aze_B Transcription factor E2 31.2 17 0.00059 27.0 1.3 15 71-85 85-99 (106)
17 2kt8_A Probable surface protei 24.5 9.5 0.00032 26.0 -1.1 25 25-49 13-37 (76)
18 3vub_A CCDB; topoisomerase poi 23.9 83 0.0028 23.1 3.9 36 116-156 29-64 (101)
19 3tfm_A Myosin X; split PH doma 23.0 2E+02 0.0069 22.6 6.3 111 49-173 29-155 (228)
20 2krs_A Probable enterotoxin; a 22.4 12 0.0004 25.2 -1.0 58 25-104 11-68 (74)
21 2zou_A Spondin-1; beta-sandwic 22.3 86 0.0029 23.9 3.8 53 96-159 5-57 (149)
22 3ffy_A Putative tetrapyrrole ( 22.2 31 0.0011 25.1 1.2 13 151-163 18-30 (115)
23 4gcn_A Protein STI-1; structur 21.1 35 0.0012 23.4 1.2 20 160-179 98-117 (127)
24 1i31_A Clathrin coat assembly 20.6 42 0.0015 28.4 1.9 25 96-120 135-159 (314)
25 1zu2_A Mitochondrial import re 20.0 28 0.00097 27.1 0.6 21 155-175 101-121 (158)
No 1
>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A*
Probab=93.40 E-value=0.28 Score=45.79 Aligned_cols=102 Identities=14% Similarity=0.152 Sum_probs=62.9
Q ss_pred ccCCcchhhhhccce--eeecCCCcceeeEEeeeceeEeeecCccceecCCCCeeeeEEEEEEecCcccccccCcccCCC
Q 037271 61 FAVKEEEKLLKACQC--YLSTTAGPIAGLLFISTEKVAFCSERSLKFYSSKGELIRVHYKVLIPLGKIKRVNQSVNMKKQ 138 (184)
Q Consensus 61 F~~~~~EkLlka~~C--YLSTtaGPVaG~LfiSt~kvAFcSdrpl~~~~p~g~~~~~~YKVvIPL~kik~vnps~n~~~p 138 (184)
|...|||.++..-.- |++.-.||+.|+|||++-|+.|.++.. +. .+.+-|||..|..|.........
T Consensus 7 ~~lLpGE~i~~~~~~V~~~~~~~~~~~GtL~lTn~rLiF~~~~~--------~~---~~~~~iPL~~I~~vek~~~~s~~ 75 (528)
T 1zsq_A 7 PPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMER--------DP---PFVLDASLGVINRVEKIGGASSR 75 (528)
T ss_dssp CCCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSS--------SS---CEEEEEEGGGEEEEEEECCTTCC
T ss_pred CccCCCCeEEEecCCEEEeCCCCCceeEEEEEECCEEEEEccCC--------Cc---cEEEEeeccceEEEEEcCCCCcC
Confidence 567899998855211 555567999999999999999999531 11 24578999888777653211111
Q ss_pred --CCceEEEEEecCceeeeeecccHHHHHHHHHHHHhh
Q 037271 139 --SEKYIEVYTVDGFDFWFMGFLNYQKAFKYLQQAISQ 174 (184)
Q Consensus 139 --~eKYIqIvTvD~~eFWFMGFvnY~kA~k~Lq~a~~~ 174 (184)
.--.|+|..-|- ..+=.+|-.=+...+.+-++|+.
T Consensus 76 ~~~~~~l~I~CKDf-r~~~f~f~~~~~~~~~v~~~L~~ 112 (528)
T 1zsq_A 76 GENSYGLETVCKDI-RNLRFAHKPEGRTRRSIFENLMK 112 (528)
T ss_dssp STTCSEEEEEETTT-EEEEEECCGGGCCHHHHHHHHHH
T ss_pred CCCCceEEEEccCC-eEEEEEecCchHHHHHHHHHHHH
Confidence 112477777664 44444565443334455566654
No 2
>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A
Probab=91.32 E-value=0.62 Score=44.79 Aligned_cols=120 Identities=14% Similarity=0.141 Sum_probs=62.1
Q ss_pred hccccchhhccChheehhhhccCCcchhhhhccc-e-eeecCCCcceeeEEeeeceeEeeecCccceecCCCCeeeeEEE
Q 037271 41 LSLGAKILQVGGMEKIFKQLFAVKEEEKLLKACQ-C-YLSTTAGPIAGLLFISTEKVAFCSERSLKFYSSKGELIRVHYK 118 (184)
Q Consensus 41 lslgakil~~GG~ekvFkq~F~~~~~EkLlka~~-C-YLSTtaGPVaG~LfiSt~kvAFcSdrpl~~~~p~g~~~~~~YK 118 (184)
+++.-++|+.|-.. -=.--|...|||.+...-. . |++.-.||+.|+|||++.|+.|.+... +. .+.
T Consensus 60 ~~~~~~~~~~~~~~-~~~~~~~LLPGE~v~~~~~~V~~~~p~~~~~~GtL~lTnyrLiF~~~~~--------~~---~~~ 127 (657)
T 1lw3_A 60 FSPDLRVLRESNKL-AEMEEPPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMER--------DP---PFV 127 (657)
T ss_dssp ------------------CCCCCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSS--------SS---CEE
T ss_pred hhhhhhhhhccccc-ccCCCCccCCCeeEEEEeCCEEEecCCCCceeEEEEEECCEEEEEecCC--------Cc---ceE
Confidence 34444455554321 1112377899999985421 1 445456899999999999999998521 11 245
Q ss_pred EEEecCcccccccCcccCCCCC--ceEEEEEecCceeeeeecccHHHHHHHHHHHHh
Q 037271 119 VLIPLGKIKRVNQSVNMKKQSE--KYIEVYTVDGFDFWFMGFLNYQKAFKYLQQAIS 173 (184)
Q Consensus 119 VvIPL~kik~vnps~n~~~p~e--KYIqIvTvD~~eFWFMGFvnY~kA~k~Lq~a~~ 173 (184)
+-|||..|..|..........+ -.|+|..-|- ..+=.+|-.=+...+.+-++|.
T Consensus 128 ~~IPL~~I~~Iekv~g~s~~g~~~~~l~I~CKDf-R~~~f~f~~~~~~~~~v~~~L~ 183 (657)
T 1lw3_A 128 LDASLGVINRVEKIGGASSRGENSYGLETVCKDI-RNLRFAHKPEGRTRRSIFENLM 183 (657)
T ss_dssp EEEEGGGEEEEEEECCTTCCSTTCSEEEEEETTT-EEEEEECCGGGCCHHHHHHHHH
T ss_pred EEecccceEEEEecCCCcccCCCCceEEEEecCC-cEEEEEeCCccchHHHHHHHHH
Confidence 6899988888765322111111 2477766664 4444456543332334445554
No 3
>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A
Probab=86.16 E-value=0.86 Score=35.32 Aligned_cols=51 Identities=22% Similarity=0.253 Sum_probs=35.6
Q ss_pred CCcceeeEEeeeceeEeeecCccceecCCCCeeeeEEEEEEecCcccccccCcccCCCCCceE
Q 037271 81 AGPIAGLLFISTEKVAFCSERSLKFYSSKGELIRVHYKVLIPLGKIKRVNQSVNMKKQSEKYI 143 (184)
Q Consensus 81 aGPVaG~LfiSt~kvAFcSdrpl~~~~p~g~~~~~~YKVvIPL~kik~vnps~n~~~p~eKYI 143 (184)
++--.|.||++|.||.|-.+.. + . .-+.|||..|+.+...+..-..+-|++
T Consensus 35 ~~~k~G~l~LTshRli~~d~~~-----~--~-----~s~~lpl~~v~~~e~~~~~f~~s~Ki~ 85 (140)
T 2hth_B 35 IKFDAGTLLLSTHRLIWRDQKN-----H--E-----CCMAILLSQIVFIEEQAAGIGKSAKIV 85 (140)
T ss_dssp SCCCCEEEEEESSEEEEEETTC-----C--S-----CCEEEEGGGEEEEEEECCTTSSCCEEE
T ss_pred CCCcCCEEEEecCEEEEecCCC-----C--c-----eEEEEEhHHeeeeeeeccccccCceEE
Confidence 4568899999999999965432 0 0 237788888887777666655555554
No 4
>2yf0_A Myotubularin-related protein 6; hydrolase; 2.65A {Homo sapiens}
Probab=83.68 E-value=5.4 Score=37.14 Aligned_cols=79 Identities=13% Similarity=0.125 Sum_probs=44.7
Q ss_pred eecCCCcceeeEEeeeceeEeeecCccceecCCCCeeeeEEEEEEecCcccccccCcccCCCCCceEEEEEecCceeeee
Q 037271 77 LSTTAGPIAGLLFISTEKVAFCSERSLKFYSSKGELIRVHYKVLIPLGKIKRVNQSVNMKKQSEKYIEVYTVDGFDFWFM 156 (184)
Q Consensus 77 LSTtaGPVaG~LfiSt~kvAFcSdrpl~~~~p~g~~~~~~YKVvIPL~kik~vnps~n~~~p~eKYIqIvTvD~~eFWFM 156 (184)
++.+.+|+.|+|+|++.|+.|.+|.+ +. +.||+..|.+|.-.... ....-|+|..-|-.-+=|
T Consensus 18 ~~~~~~~~~GtL~lTn~~LiF~~~~~--------~e------~wi~~~~I~~VeK~~~~--~~~~~l~I~CKDfr~~~f- 80 (512)
T 2yf0_A 18 FSTSNKSLTGTLYLTATHLLFIDSHQ--------KE------TWILHHHIASVEKLALT--TSGCPLVIQCKNFRTVHF- 80 (512)
T ss_dssp ------CCEEEEEECSSEEEEEESSS--------CE------EEEEGGGEEEEEECCCB--TTBEEEEEEETTSCEEEE-
T ss_pred cCCCCCceeEEEEEECCEEEEeCCCC--------Cc------eEecccceeEEEEecCC--CCCceEEEEecCCcEEEE-
Confidence 34567999999999999999999542 22 45677777777532111 122457777777655544
Q ss_pred ecccHHHHHHHHHHHHh
Q 037271 157 GFLNYQKAFKYLQQAIS 173 (184)
Q Consensus 157 GFvnY~kA~k~Lq~a~~ 173 (184)
.|-.=+.+ +.+-++|.
T Consensus 81 ~f~~~~~~-~~v~~sL~ 96 (512)
T 2yf0_A 81 IVPRERDC-HDIYNSLL 96 (512)
T ss_dssp EESCHHHH-HHHHHHHH
T ss_pred EeCChHHH-HHHHHHHH
Confidence 45543333 33334444
No 5
>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12
Probab=78.26 E-value=1.7 Score=33.94 Aligned_cols=48 Identities=15% Similarity=0.259 Sum_probs=33.7
Q ss_pred CCcceeeEEeeeceeEeeecCccceecCCCCeeeeEEEEEEecCcccccccCcccCCCC
Q 037271 81 AGPIAGLLFISTEKVAFCSERSLKFYSSKGELIRVHYKVLIPLGKIKRVNQSVNMKKQS 139 (184)
Q Consensus 81 aGPVaG~LfiSt~kvAFcSdrpl~~~~p~g~~~~~~YKVvIPL~kik~vnps~n~~~p~ 139 (184)
.+--.|.|||+|.||-|-.+.+-.. .-+.+||..|+.+...+..-.++
T Consensus 48 ~~~k~G~lyLTshRIIyv~~~~~~~-----------~SfslPL~~v~~~e~~~~~fg~s 95 (145)
T 2cay_A 48 LQRQRGRIFLTSQRIIYIDDAKPTQ-----------NSLGLELDDLAYVNYSSGFLTRS 95 (145)
T ss_dssp TTCSSEEEEEESSEEEEEESSCHHH-----------HCEEEEGGGEEEEEEECSSSSSS
T ss_pred cCCCccEEEEEcCeEEEecCCCCcc-----------eEEEeEhHheeeeeEEcCccccC
Confidence 5778999999999999975533111 12678888888777766555444
No 6
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=48.27 E-value=6.7 Score=28.97 Aligned_cols=20 Identities=20% Similarity=0.532 Sum_probs=13.9
Q ss_pred CCCCCceEEEEEecCceeee
Q 037271 136 KKQSEKYIEVYTVDGFDFWF 155 (184)
Q Consensus 136 ~~p~eKYIqIvTvD~~eFWF 155 (184)
+-|..+||.++|-||++|--
T Consensus 12 ~~~~~~~v~L~SsDG~~F~V 31 (112)
T 1vcb_B 12 EGPDAMYVKLISSDGHEFIV 31 (112)
T ss_dssp -----CEEEEECTTSCEEEE
T ss_pred cCCCCCEEEEEcCCCCEEEE
Confidence 34667999999999999964
No 7
>4ag4_A Epithelial discoidin domain-containing receptor 1; immune system-transferase complex; HET: NAG; 2.80A {Homo sapiens}
Probab=45.79 E-value=11 Score=33.28 Aligned_cols=59 Identities=12% Similarity=0.034 Sum_probs=45.7
Q ss_pred hhhhhccceeeecCCCcceeeEEeeeceeEeeec-------CccceecCCCCeeeeEEEEEEecCc
Q 037271 67 EKLLKACQCYLSTTAGPIAGLLFISTEKVAFCSE-------RSLKFYSSKGELIRVHYKVLIPLGK 125 (184)
Q Consensus 67 EkLlka~~CYLSTtaGPVaG~LfiSt~kvAFcSd-------rpl~~~~p~g~~~~~~YKVvIPL~k 125 (184)
+++++-.+|.|-+..=.--|+-.-|..++=|++| .|+.|+.+.-...++-.-|.|||++
T Consensus 250 d~~RnFt~~~ih~~n~~~~~v~~f~~~~~~Fs~~~~~~~~~~p~~~~~~~d~~~~~ar~v~i~l~~ 315 (351)
T 4ag4_A 250 DRLRAFQAMQVHCNNMHTLGARLPGGVECRFRRGPAMAWEGEPMRHNLGGNLGDPRARAVSVPLGG 315 (351)
T ss_dssp EEEEEEEEEEEEECCCGGGTBCCCSEEEEEEECSSSSSCSSSCEEEECSSCCSCCSCEEEEEEEEE
T ss_pred CcEEEEEEEEEEecccccccceeeeEEEEEEECCCCccccCCceEeecCCCcCCCccceEEEeCCC
Confidence 5678899999999888888888889999999998 3888875432333444669999973
No 8
>2d9z_A Protein kinase C, NU type; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.95 E-value=13 Score=29.07 Aligned_cols=43 Identities=28% Similarity=0.478 Sum_probs=31.2
Q ss_pred eeeeEEEEEEecCcccccccCcccCC--CCC--ceEEEEEecCceeeeee
Q 037271 112 LIRVHYKVLIPLGKIKRVNQSVNMKK--QSE--KYIEVYTVDGFDFWFMG 157 (184)
Q Consensus 112 ~~~~~YKVvIPL~kik~vnps~n~~~--p~e--KYIqIvTvD~~eFWFMG 157 (184)
...-|||. |||..|-.|.|..+... +.. -..||+| .+-.|. +|
T Consensus 43 ~~~k~yke-IpLseIL~v~~~~~~~~~~~~~~phcFEi~T-~~~~y~-Vg 89 (129)
T 2d9z_A 43 SGSKYYKE-IPLSEILRISSPRDFTNISQGSNPHCFEIIT-DTMVYF-VG 89 (129)
T ss_dssp SCCSCCCE-ECTTTCCEECCTTCCCCSSSCSCCCSEEEEC-SSCEEE-EC
T ss_pred CCCceece-eeHHHhcccccccCccccCCCCCCceEEEEE-CCEEEE-Ec
Confidence 44557887 99999999999876653 222 6799998 677764 44
No 9
>1zyi_A Methylosome subunit picln; PH domain, cell volume regulation, RNA splicing, translation; NMR {Canis lupus familiaris}
Probab=43.54 E-value=22 Score=28.64 Aligned_cols=29 Identities=17% Similarity=0.370 Sum_probs=22.4
Q ss_pred cceeeecCCCcceeeEEeeeceeEeeecCc
Q 037271 73 CQCYLSTTAGPIAGLLFISTEKVAFCSERS 102 (184)
Q Consensus 73 ~~CYLSTtaGPVaG~LfiSt~kvAFcSdrp 102 (184)
-+++|-.. .+-.|+|||++.||.+-|+..
T Consensus 32 v~~vl~~~-~~g~GtLyVt~~~l~W~~~~~ 60 (171)
T 1zyi_A 32 TEAVLNGK-GLGTGTLYIAESRLSWLDGSG 60 (171)
T ss_dssp EEEEBTTB-CCCEEEEEEETTEEEEEETTT
T ss_pred EEEEECCC-ccCceEEEEEcCEEEEEcCCC
Confidence 56788653 334699999999999998853
No 10
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=41.82 E-value=13 Score=26.67 Aligned_cols=17 Identities=12% Similarity=0.374 Sum_probs=14.7
Q ss_pred CCceEEEEEecCceeee
Q 037271 139 SEKYIEVYTVDGFDFWF 155 (184)
Q Consensus 139 ~eKYIqIvTvD~~eFWF 155 (184)
+.+||.++|-||++|--
T Consensus 2 ~~~~v~L~SsDg~~f~V 18 (99)
T 1hv2_A 2 SQDFVTLVSKDDKEYEI 18 (99)
T ss_dssp CCSEEEEEETTTEEEEE
T ss_pred CCcEEEEEecCCCEEEE
Confidence 35899999999999964
No 11
>2coa_A Protein kinase C, D2 type; protein kinase D2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=39.94 E-value=20 Score=27.81 Aligned_cols=41 Identities=24% Similarity=0.368 Sum_probs=30.0
Q ss_pred eeeeEEEEEEecCcccccccCcccCC--CC--CceEEEEEecCceee
Q 037271 112 LIRVHYKVLIPLGKIKRVNQSVNMKK--QS--EKYIEVYTVDGFDFW 154 (184)
Q Consensus 112 ~~~~~YKVvIPL~kik~vnps~n~~~--p~--eKYIqIvTvD~~eFW 154 (184)
...-|||. |||..|-.|.|..+... +. .-..||+| .+-.|.
T Consensus 43 ~~~~~yke-IpL~eIl~v~~~~~~~~l~~~~~~hcFEi~T-~~~~yy 87 (125)
T 2coa_A 43 TTNRYYKE-IPLSEILTVESAQNFSLVPPGTNPHCFEIVT-ANATYF 87 (125)
T ss_dssp SCSSCSEE-EETTTCCEEEESCCCSSSCTTSCCEEEEEEC-SSCCCC
T ss_pred CCCceeee-eehhHeecccccccccccCCCCCCceEEEEe-CCeEEE
Confidence 34557887 99999999999876553 22 26799999 566664
No 12
>1pfj_A TFIIH basal transcription factor complex P62 subunit; PH/PTB domain, structural proteomics in europe, spine, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.9 PDB: 2rnr_B
Probab=39.41 E-value=77 Score=23.94 Aligned_cols=76 Identities=22% Similarity=0.265 Sum_probs=46.9
Q ss_pred eeEEeeeceeEeeecCccceecCCCCeeeeEEEEEEecCcccccccCcccCCCCCceEEEEEecCceeeeeecccHH---
Q 037271 86 GLLFISTEKVAFCSERSLKFYSSKGELIRVHYKVLIPLGKIKRVNQSVNMKKQSEKYIEVYTVDGFDFWFMGFLNYQ--- 162 (184)
Q Consensus 86 G~LfiSt~kvAFcSdrpl~~~~p~g~~~~~~YKVvIPL~kik~vnps~n~~~p~eKYIqIvTvD~~eFWFMGFvnY~--- 162 (184)
|+||++..+|+...+..= . --|.+|..+|+.-..| ...-+.==+||+-.|+-.+=|- |.|=.
T Consensus 22 GtL~l~~d~i~W~p~~~~-------~-----~~vs~~~~~I~~qq~S--P~~k~KVqLqi~l~~~~~~~F~-Ftn~~~a~ 86 (108)
T 1pfj_A 22 GALYLMAERIAWAPEGKD-------R-----FTISHMYADIKCQKIS--PEGKAKIQLQLVLHAGDTTNFH-FSNESTAV 86 (108)
T ss_dssp CEEEEETTEEEEECSSSS-------S-----CSEEEETTTCCCEEEC--CSSSSSCEEEEECSSSCEEEEE-CCCSSCTT
T ss_pred ceEEEEcceEEEccCCCC-------C-----ceEEEehhhhhcceeC--CCCCccEEEEEEEeCCCceEEE-EcCcHHHH
Confidence 999999999998765431 1 1277889999864443 2444555678888776555443 55522
Q ss_pred ---HHHH-HHHHHHhhcC
Q 037271 163 ---KAFK-YLQQAISQSC 176 (184)
Q Consensus 163 ---kA~k-~Lq~a~~~~~ 176 (184)
.|+| .|+++|..++
T Consensus 87 ~erd~VKd~L~~~l~~~k 104 (108)
T 1pfj_A 87 KERDAVKDLLQQLLPKFK 104 (108)
T ss_dssp HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 2343 4555555443
No 13
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=37.52 E-value=13 Score=26.42 Aligned_cols=15 Identities=27% Similarity=0.700 Sum_probs=13.5
Q ss_pred ceEEEEEecCceeee
Q 037271 141 KYIEVYTVDGFDFWF 155 (184)
Q Consensus 141 KYIqIvTvD~~eFWF 155 (184)
+||.++|-||++|--
T Consensus 1 ~~v~L~SsDg~~f~V 15 (96)
T 2fnj_C 1 MYVKLISSDGHEFIV 15 (96)
T ss_dssp CEEEEECTTSCEEEE
T ss_pred CeEEEEecCCCEEEe
Confidence 699999999999964
No 14
>2kq8_A Cell WALL hydrolase; GFT protein structure, NESG, PSI, SH3 domain, structural genomics, protein structure initiative; NMR {Bacillus thuringiensis serovarkonkukian}
Probab=34.41 E-value=6.6 Score=26.19 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.7
Q ss_pred hhcccCCChhHHHhhhhccccch
Q 037271 25 EHVRLGPKITETVKGKLSLGAKI 47 (184)
Q Consensus 25 ~h~k~gp~~set~~Gklslgaki 47 (184)
-+||.||+..-.+.|+|..|+++
T Consensus 12 lnvRsgP~~~~~ii~~l~~G~~v 34 (70)
T 2kq8_A 12 LNVRSGEGTNYRIIGALPQGQKV 34 (70)
T ss_dssp SCSSSSSSSCTTSCCCCCSSSSC
T ss_pred EEEEcCCCCCCceEEEECCCCEE
Confidence 37999999999999999999975
No 15
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=32.89 E-value=17 Score=25.52 Aligned_cols=14 Identities=29% Similarity=0.783 Sum_probs=12.4
Q ss_pred eEEEEEecCceeee
Q 037271 142 YIEVYTVDGFDFWF 155 (184)
Q Consensus 142 YIqIvTvD~~eFWF 155 (184)
||.++|.||++|--
T Consensus 3 ~v~L~SsDg~~F~v 16 (97)
T 4ajy_C 3 YVKLISSDGHEFIV 16 (97)
T ss_dssp EEEEECTTCCEEEE
T ss_pred EEEEEecCCcEEEe
Confidence 89999999999853
No 16
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=31.21 E-value=17 Score=27.01 Aligned_cols=15 Identities=33% Similarity=0.516 Sum_probs=13.6
Q ss_pred hccceeeecCCCcce
Q 037271 71 KACQCYLSTTAGPIA 85 (184)
Q Consensus 71 ka~~CYLSTtaGPVa 85 (184)
+.|++||.++.|||-
T Consensus 85 ~~yqi~LkS~~GPId 99 (106)
T 2aze_B 85 ENFQISLKSKQGPID 99 (106)
T ss_dssp SCEEEEEECSSSCCE
T ss_pred cceEEEEECCCCCEE
Confidence 589999999999984
No 17
>2kt8_A Probable surface protein; SH3 family, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium perfringens} PDB: 2kyb_A
Probab=24.53 E-value=9.5 Score=26.05 Aligned_cols=25 Identities=32% Similarity=0.345 Sum_probs=21.6
Q ss_pred hhcccCCChhHHHhhhhccccchhh
Q 037271 25 EHVRLGPKITETVKGKLSLGAKILQ 49 (184)
Q Consensus 25 ~h~k~gp~~set~~Gklslgakil~ 49 (184)
-+||.||+..-.+.|+|..|+++--
T Consensus 13 lnvR~~Ps~~~~ii~~l~~G~~v~v 37 (76)
T 2kt8_A 13 LNVREGASTSSKVIGSLSGNTKVTI 37 (76)
T ss_dssp EEEESSSSTTSCEEEEECTTCEEEE
T ss_pred EEEEcCCCCCChhhEEECCCCEEEE
Confidence 4799999999999999999997643
No 18
>3vub_A CCDB; topoisomerase poison; 1.40A {Escherichia coli} SCOP: b.34.6.1 PDB: 1x75_C* 1vub_A 2vub_A 3g7z_A 3hpw_A 4vub_A
Probab=23.91 E-value=83 Score=23.13 Aligned_cols=36 Identities=19% Similarity=0.339 Sum_probs=23.9
Q ss_pred EEEEEEecCcccccccCcccCCCCCceEEEEEecCceeeee
Q 037271 116 HYKVLIPLGKIKRVNQSVNMKKQSEKYIEVYTVDGFDFWFM 156 (184)
Q Consensus 116 ~YKVvIPL~kik~vnps~n~~~p~eKYIqIvTvD~~eFWFM 156 (184)
...|||||-......+ ++..+.-=++++||.+|-.|
T Consensus 29 ~tRvVvPL~~~~~~~~-----~~~~~L~P~~~i~G~~~vl~ 64 (101)
T 3vub_A 29 GRRMVIPLASARLLSD-----KVSRELYPVVHIGDESWRMM 64 (101)
T ss_dssp TEEEEEEEEESSSSCS-----SSCTTTSCEEEETTEEEEEC
T ss_pred CceEEEECCChhHcCc-----ccCcccceEEEECCEEEEEe
Confidence 4679999977765543 22234444788999988654
No 19
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Probab=23.02 E-value=2e+02 Score=22.60 Aligned_cols=111 Identities=18% Similarity=0.207 Sum_probs=63.2
Q ss_pred hccChheehhhhccCCcchhhhhccceeeecCCCc--ceeeEEeeece------------eEeeecCccceecCCCCeee
Q 037271 49 QVGGMEKIFKQLFAVKEEEKLLKACQCYLSTTAGP--IAGLLFISTEK------------VAFCSERSLKFYSSKGELIR 114 (184)
Q Consensus 49 ~~GG~ekvFkq~F~~~~~EkLlka~~CYLSTtaGP--VaG~LfiSt~k------------vAFcSdrpl~~~~p~g~~~~ 114 (184)
..||.-|-+|.-+-+ +|.-.+....+.++ ..|-|+--... .....|..|.|+....+
T Consensus 29 ~~~~~~~~w~~rw~v------l~~~~~~~~~~~~~~~k~G~L~K~g~~~~~~~~k~WkkRwfvL~~~~L~Yyk~~~~--- 99 (228)
T 3tfm_A 29 MNGGLMNSWKRRWCV------LKDETFLWFRSKQEALKQGWLHNNGGGSSTLSRRNWKKRWFVLRQSKLMYFENDSE--- 99 (228)
T ss_dssp ECCTTTCCCEEEEEE------EETTEEEEESSCCCSSEEEEEEECGGGCSSSCGGGCEEEEEEECSSEEEEESSTTC---
T ss_pred ecCcccccceEEEEE------EeCCEEEEeccCCCcceEEEEEEECCCcCCcccCCceEEEEEEeCCEEEEEeCCCC---
Confidence 358888888655555 22333333333333 35888776543 35556888888754433
Q ss_pred eEEEEEEecCcccccccCcccCCCCCceEEEEEecCceeeeeecc--cHHHHHHHHHHHHh
Q 037271 115 VHYKVLIPLGKIKRVNQSVNMKKQSEKYIEVYTVDGFDFWFMGFL--NYQKAFKYLQQAIS 173 (184)
Q Consensus 115 ~~YKVvIPL~kik~vnps~n~~~p~eKYIqIvTvD~~eFWFMGFv--nY~kA~k~Lq~a~~ 173 (184)
..-+=+|||..+..|.+..+. +--++|+| ++..|.|..== ..+.=+..|++|+.
T Consensus 100 ~~~~g~I~L~~~~~v~~~~~k----~~~F~I~t-~~r~~~l~A~s~~e~~~Wv~aL~~~i~ 155 (228)
T 3tfm_A 100 EKLKGTVEVRSAKEIIDNTNK----ENGIDIIM-ADRTFHLIAESPEDASQWFSVLSQVHS 155 (228)
T ss_dssp CSEEEEEEGGGCSEEEEETTT----TSEEEEEC-SSCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred cceeEEEEcCCCEEeccCCCC----CcEEEEEc-CCcEEEEEcCCHHHHHHHHHHHHHHHh
Confidence 124568999999887764432 23578876 55666665321 12222455666664
No 20
>2krs_A Probable enterotoxin; all beta, SH3, ENTD, CPF_0587, CPE0606, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium perfringens}
Probab=22.35 E-value=12 Score=25.24 Aligned_cols=58 Identities=21% Similarity=0.242 Sum_probs=37.6
Q ss_pred hhcccCCChhHHHhhhhccccchhhccChheehhhhccCCcchhhhhccceeeecCCCcceeeEEeeeceeEeeecCccc
Q 037271 25 EHVRLGPKITETVKGKLSLGAKILQVGGMEKIFKQLFAVKEEEKLLKACQCYLSTTAGPIAGLLFISTEKVAFCSERSLK 104 (184)
Q Consensus 25 ~h~k~gp~~set~~Gklslgakil~~GG~ekvFkq~F~~~~~EkLlka~~CYLSTtaGPVaG~LfiSt~kvAFcSdrpl~ 104 (184)
-+||.||+....+.|+|..|+++--.+ + .| -=|.+... | ..=||+..-|...++.||.
T Consensus 11 lnvRs~P~~~~~vi~~l~~G~~v~v~~-------~-----~~------~W~kV~~~-g---~~GwV~~~yl~~~~~~~~~ 68 (74)
T 2krs_A 11 LNMRSGPGSNYGVIGTLRNNDKVEIIK-------E-----VD------GWYEIRFN-G---KVGYASKSYITIVNEGSLE 68 (74)
T ss_dssp EEEESSSSTTTCEEEEEETTCEEEEEE-------E-----ET------TEEEEEET-T---EEEEECSSSEEESSSSCCC
T ss_pred EEEEcCCCCCChHHEEECCCCEEEEEE-------E-----eC------CEEEEEEC-C---eEEEEEhHHcCCCCCccch
Confidence 379999999999999999998764322 0 01 14555543 3 2336777777766666664
No 21
>2zou_A Spondin-1; beta-sandwich, extracellular protein, cell adhesion, extrace matrix, glycoprotein, secreted; 1.45A {Homo sapiens}
Probab=22.34 E-value=86 Score=23.92 Aligned_cols=53 Identities=15% Similarity=0.248 Sum_probs=26.7
Q ss_pred EeeecCccceecCCCCeeeeEEEEEEecCcccccccCcccCCCCCceEEEEEecCceeeeeecc
Q 037271 96 AFCSERSLKFYSSKGELIRVHYKVLIPLGKIKRVNQSVNMKKQSEKYIEVYTVDGFDFWFMGFL 159 (184)
Q Consensus 96 AFcSdrpl~~~~p~g~~~~~~YKVvIPL~kik~vnps~n~~~p~eKYIqIvTvD~~eFWFMGFv 159 (184)
+-| ||-..-.. .-+..-.+|+|.|.= +.+...|.+.|---+.-..- =.|+||+
T Consensus 5 ~aC-~~~p~~~~-~~~~~~~py~i~i~~--------~~~~y~pG~~~~VtL~~~~~-~~F~GFl 57 (149)
T 2zou_A 5 GYC-SRILRAQG-TRREGYTEFSLRVEG--------DPDFYKPGTSYRVTLSAAPP-SYFRGFT 57 (149)
T ss_dssp -CC-TTC--------CCSCCSEEEEETT--------CCSSBCTTCEEEEEEEECTT-CCBSEEE
T ss_pred hhh-cCCCCCCC-CCCCCCCCEEEEEec--------CCceEcCCCcEEEEEeccCC-CceEEEE
Confidence 457 66544443 223445679888752 23456789998433332211 2589997
No 22
>3ffy_A Putative tetrapyrrole (corrin/porphyrin) methylas; structural genomics, APC62130.1, methyltransferase, PSI-2, P structure initiative; 2.00A {Bacteroides fragilis} PDB: 3fq6_A
Probab=22.16 E-value=31 Score=25.10 Aligned_cols=13 Identities=46% Similarity=0.700 Sum_probs=9.7
Q ss_pred ceeeeeecccHHH
Q 037271 151 FDFWFMGFLNYQK 163 (184)
Q Consensus 151 ~eFWFMGFvnY~k 163 (184)
..|||.||+-=.+
T Consensus 18 ~~F~F~Gflp~~~ 30 (115)
T 3ffy_A 18 EKFCFEGFLPQKK 30 (115)
T ss_dssp SSEEEEESCCSST
T ss_pred CcEEEEeeCCCCc
Confidence 3699999996433
No 23
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=21.05 E-value=35 Score=23.38 Aligned_cols=20 Identities=10% Similarity=0.300 Sum_probs=16.0
Q ss_pred cHHHHHHHHHHHHhhcCCCC
Q 037271 160 NYQKAFKYLQQAISQSCTDD 179 (184)
Q Consensus 160 nY~kA~k~Lq~a~~~~~~~~ 179 (184)
.|++|++++++|+....+++
T Consensus 98 ~~~~A~~~~~kal~~~~~~~ 117 (127)
T 4gcn_A 98 DLSLAVQWFHRSLSEFRDPE 117 (127)
T ss_dssp CHHHHHHHHHHHHHHSCCHH
T ss_pred CHHHHHHHHHHHHhhCcCHH
Confidence 68999999999998665443
No 24
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A
Probab=20.65 E-value=42 Score=28.39 Aligned_cols=25 Identities=36% Similarity=0.604 Sum_probs=18.8
Q ss_pred EeeecCccceecCCCCeeeeEEEEE
Q 037271 96 AFCSERSLKFYSSKGELIRVHYKVL 120 (184)
Q Consensus 96 AFcSdrpl~~~~p~g~~~~~~YKVv 120 (184)
.|-|||-|+|.+|+|+..=..|++.
T Consensus 135 ~f~~~r~IsFiPPDG~F~Lm~Yr~~ 159 (314)
T 1i31_A 135 KFDSERSISFIPPDGEFELMRYRTT 159 (314)
T ss_dssp ----CCCEEECCCSEEEEEEEEEEC
T ss_pred HcCCcceEEEECCCCCeEEEEEEec
Confidence 3679999999999999988888873
No 25
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=20.04 E-value=28 Score=27.14 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=17.3
Q ss_pred eeecccHHHHHHHHHHHHhhc
Q 037271 155 FMGFLNYQKAFKYLQQAISQS 175 (184)
Q Consensus 155 FMGFvnY~kA~k~Lq~a~~~~ 175 (184)
-.++=+|++|.+++++|+...
T Consensus 101 ~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 101 TEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhccHHHHHHHHHHHHHhC
Confidence 455678999999999999754
Done!