BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037272
         (327 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9S7C9|ESCA_ARATH Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana
           GN=ESC PE=2 SV=1
          Length = 311

 Score =  216 bits (550), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 183/355 (51%), Positives = 210/355 (59%), Gaps = 75/355 (21%)

Query: 2   GGYEQRQGGGRYFYQLLMRPELHLQRPI----ASTTDSPQNIIQTQPQPCSNNSDSEDDD 57
           GGYEQ  G  RYF+ L  RPE+H Q+       +  D   +  Q   Q    + DS + D
Sbjct: 3   GGYEQGGGASRYFHNLF-RPEIHHQQLQPQGGINLIDQHHHQHQQHQQQQQPSDDSRESD 61

Query: 58  NSSSSSKLGKARDDLDAAAAASSSNRRPRGRPPGSKNKPKPPIVVTRDSPNALRSHVLEV 117
           +S+      + R D D   ++S+  +RPRGRPPGSKNK KPPI+VTRDSPNALRSHVLEV
Sbjct: 62  HSNKDHHQ-QGRPDSDPNTSSSAPGKRPRGRPPGSKNKAKPPIIVTRDSPNALRSHVLEV 120

Query: 118 SGGADIVESMRNYASRRGRGVCVLSGSGTASNVTLRQPA-----------GSVLTLHGRF 166
           S GADIVES+  YA RRGRGV VL G+GT SNVTLRQP            G V+TLHGRF
Sbjct: 121 SPGADIVESVSTYARRRGRGVSVLGGNGTVSNVTLRQPVTPGNGGGVSGGGGVVTLHGRF 180

Query: 167 EILSLSGTVLPPPAPPGAGGLSIFLSGGQGQVVGGTVVGPLVASGPVILIAASFANAVFE 226
           EILSL+GTVLPPPAPPGAGGLSIFL+GGQGQVVGG+VV PL+AS PVIL+AASF+NAVFE
Sbjct: 181 EILSLTGTVLPPPAPPGAGGLSIFLAGGQGQVVGGSVVAPLIASAPVILMAASFSNAVFE 240

Query: 227 RLPLPLDDNH------------PQQQQRQQEEEEEGGGGGVHQVQPSANSQSSGVTGGGH 274
           RLP+  ++              PQ QQ                  PSA S  SGVTG G 
Sbjct: 241 RLPIEEEEEEGGGGGGGGGGGPPQMQQ-----------------APSA-SPPSGVTGQGQ 282

Query: 275 QHQLTEGRGASGASFFNMGTTGTAGNVGNYPFSGD--LFGWPATTASAATARPPF 327
                                   GNVG Y FSGD  L GW A T S    RPPF
Sbjct: 283 ----------------------LGGNVGGYGFSGDPHLLGWGAGTPS----RPPF 311


>sp|Q2JVA4|GLMU_SYNJA Bifunctional protein GlmU OS=Synechococcus sp. (strain JA-3-3Ab)
           GN=glmU PE=3 SV=1
          Length = 621

 Score = 34.7 bits (78), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 61/126 (48%), Gaps = 9/126 (7%)

Query: 109 ALRSHVLEVSGGADIVESMRNYASRR-GRGVCVLSGSGTASNVTLRQPAGSV-LTLHGRF 166
           +LR + L +  G D+ + +  +A ++  +   VLS  G+ S  TLR    +    L  R 
Sbjct: 467 SLRVYPLRLLPGQDLKQELERFARQQPLQAGFVLSAVGSLSQATLRLADQTEDYLLSERL 526

Query: 167 EILSLSGTVLPPPAPPGAGGLSIFLSGGQGQVVGGTVV-GPLVASGPVILIAASFANAVF 225
           EIL+LSG++      P    L + ++  QG+  GG +  G L+ +   I++A S     F
Sbjct: 527 EILALSGSLC-----PDGVHLHLAVADAQGRTWGGHLRPGCLIYTTAEIVLADSLEYR-F 580

Query: 226 ERLPLP 231
            R P P
Sbjct: 581 SRQPDP 586


>sp|P53049|YOR1_YEAST Oligomycin resistance ATP-dependent permease YOR1 OS=Saccharomyces
           cerevisiae (strain ATCC 204508 / S288c) GN=YOR1 PE=1
           SV=1
          Length = 1477

 Score = 33.5 bits (75), Expect = 2.1,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 63/158 (39%), Gaps = 25/158 (15%)

Query: 25  LQRPIASTTDSPQNIIQTQPQP------------CSNNSDSEDDDNSSSSSKLGKARDDL 72
           LQ  + +  D P  +I+ +P P            CS   +  + +++   +K G+A+D+ 
Sbjct: 501 LQSLLEAPEDDPNQMIEMKPSPGFDPKLALKMTHCSFEWEDYELNDAIEEAK-GEAKDE- 558

Query: 73  DAAAAASSSNRRPRGRPPGSKNKPK--PPIVVTRDSPNALRSHVLEVSGGADIVESMRNY 130
                     +   G+P  S NK K    ++  RD P  L        G  D+     N+
Sbjct: 559 --GKKNKKKRKDTWGKPSASTNKAKRLDNMLKDRDGPEDLEK--TSFRGFKDL-----NF 609

Query: 131 ASRRGRGVCVLSGSGTASNVTLRQPAGSVLTLHGRFEI 168
             ++G  + +    GT  +  L   AGS+    G+ E+
Sbjct: 610 DIKKGEFIMITGPIGTGKSSLLNAMAGSMRKTDGKVEV 647


>sp|B9JKQ7|ATKA_AGRRK Potassium-transporting ATPase A chain OS=Agrobacterium radiobacter
           (strain K84 / ATCC BAA-868) GN=kdpA PE=3 SV=1
          Length = 567

 Score = 32.7 bits (73), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 16/107 (14%)

Query: 119 GGADIVESMRNYASRRGRGVCVLSGSGTASNVTLRQPAGSVLTLHGRFEI----LSLSGT 174
           G ++I+ +  + A+  G     LS + T  N+TL      V+ L GRF +    L+++G+
Sbjct: 455 GFSEILYAYSSAAANNGSAFAGLSANTTWYNITL-----GVVMLIGRFLVIVPALAIAGS 509

Query: 175 VLPPPAPPGAGG-------LSIFLSGGQGQVVGGTVVGPLVASGPVI 214
           ++     P + G       L + L  G   +VGG    P +A GP++
Sbjct: 510 LIAKKTVPASAGTFPTDGPLFVGLLVGTILIVGGLTFFPALALGPIV 556


>sp|Q2JII9|GLMU_SYNJB Bifunctional protein GlmU OS=Synechococcus sp. (strain
           JA-2-3B'a(2-13)) GN=glmU PE=3 SV=1
          Length = 632

 Score = 32.3 bits (72), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 10/117 (8%)

Query: 107 PNALRSHVLEVSGGADIVESMRNYASRR-GRGVCVLSGSGTASNVTLR--QPAGSVLTLH 163
           P +L+ + L +  G D+ + +   A ++  +   VLS  G+ S  TLR     G  L L 
Sbjct: 467 PGSLKIYPLRLFPGQDLKQELERLARQQPLQAGFVLSAVGSLSQATLRLADQTGDHL-LS 525

Query: 164 GRFEILSLSGTVLPPPAPPGAGGLSIFLSGGQGQVVGGTVV-GPLVASGPVILIAAS 219
            R EIL+LSG++      P    L + ++  +GQ  GG +  G L+ +   I++A S
Sbjct: 526 ERLEILALSGSLC-----PDGVHLHLTVADARGQTWGGHLRPGCLIYTTAEIVLADS 577


>sp|Q3AB86|DXR_CARHZ 1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Carboxydothermus
           hydrogenoformans (strain Z-2901 / DSM 6008) GN=dxr PE=3
           SV=1
          Length = 384

 Score = 32.0 bits (71), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 10/106 (9%)

Query: 125 ESMRNYASR-RGRGVCVLSGSGTASNVTLRQPAGSVLTLHGRFEILSLSGTV-LPPPAPP 182
           ES + Y    +  G+ + +GS    N+ L      ++T        ++ GT+ L P    
Sbjct: 60  ESYKTYYQEFKNHGILLTTGSKELLNLALLPGVDGIIT--------AIPGTICLLPTIEA 111

Query: 183 GAGGLSIFLSGGQGQVVGGTVVGPLVASGPVILIAASFANAVFERL 228
              G  I+L+  +  V  G ++ PL+  G  +L   S  +A+F+ L
Sbjct: 112 LKAGKIIYLANKETMVAAGEIITPLMKLGENLLPVDSEHSAIFQAL 157


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.311    0.131    0.383 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 138,719,779
Number of Sequences: 539616
Number of extensions: 6686379
Number of successful extensions: 38671
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 177
Number of HSP's that attempted gapping in prelim test: 37229
Number of HSP's gapped (non-prelim): 1315
length of query: 327
length of database: 191,569,459
effective HSP length: 118
effective length of query: 209
effective length of database: 127,894,771
effective search space: 26730007139
effective search space used: 26730007139
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)