Query 037272
Match_columns 327
No_of_seqs 215 out of 568
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 10:32:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037272.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037272hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03479 DUF296: Domain of unk 100.0 3.7E-29 8E-34 209.0 10.9 116 110-227 1-120 (120)
2 COG1661 Predicted DNA-binding 99.9 1.7E-26 3.7E-31 200.6 14.4 121 108-232 7-132 (141)
3 PF02178 AT_hook: AT hook moti 89.0 0.16 3.5E-06 28.3 0.5 13 83-95 1-13 (13)
4 smart00384 AT_hook DNA binding 75.9 1.8 3.9E-05 28.5 1.5 16 83-98 1-16 (26)
5 PRK09469 glnA glutamine synthe 50.8 6.4 0.00014 40.7 0.7 88 112-199 181-283 (469)
6 PF02196 RBD: Raf-like Ras-bin 49.1 1.1E+02 0.0024 23.6 7.2 42 111-154 11-54 (71)
7 smart00455 RBD Raf-like Ras-bi 45.6 68 0.0015 24.9 5.5 35 111-145 10-46 (70)
8 cd01817 RGS12_RBD Ubiquitin do 40.7 75 0.0016 25.5 5.1 42 111-152 10-53 (73)
9 cd01760 RBD Ubiquitin-like dom 36.7 69 0.0015 25.3 4.3 37 111-147 10-48 (72)
10 PF03306 AAL_decarboxy: Alpha- 27.9 1E+02 0.0023 29.0 4.8 112 113-229 82-207 (220)
11 PF14201 DUF4318: Domain of un 22.2 1.4E+02 0.003 23.9 3.8 23 119-141 16-38 (74)
No 1
>PF03479 DUF296: Domain of unknown function (DUF296); InterPro: IPR005175 This putative conserved domain is found in proteins that contain AT-hook motifs IPR000637 from INTERPRO, suggesting a DNA-binding function for the proteins as a whole, however, the function of this domain is unknown. Overexpression of a protein containing this domain, Q9S7C9 from SWISSPROT, in Arabidopsis thaliana causes late flowering and modified leaf development []. ; PDB: 2DT4_A 2P6Y_A 3HWU_A 3HTN_A 2NMU_A 2H6L_A 2HX0_A.
Probab=99.96 E-value=3.7e-29 Score=208.97 Aligned_cols=116 Identities=34% Similarity=0.461 Sum_probs=104.2
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHcCCcEEEEeeeceeeeEEEeCCC----CceeeeeccEeEEEeEeeecCCCCCCCCC
Q 037272 110 LRSHVLEVSGGADIVESMRNYASRRGRGVCVLSGSGTASNVTLRQPA----GSVLTLHGRFEILSLSGTVLPPPAPPGAG 185 (327)
Q Consensus 110 mr~hVIrL~~GEDIvesI~~fAr~~~i~~~VLSaiGAVsnVTLr~p~----g~~~tleG~FEILSLsGnis~~d~~p~~~ 185 (327)
||+|++||++||||+++|++||++++|.+|+|+++|+|++|+|++++ ..+++++|+|||+||+|||++.+++ ++.
T Consensus 1 ~r~~~~rl~~Gedl~~~l~~~~~~~~i~~~~is~iGsl~~~~l~~~~~~~~~~~~~~~g~~Ei~sl~G~i~~~~g~-~~~ 79 (120)
T PF03479_consen 1 GRVFVIRLDPGEDLLESLEAFAREHGIRSGVISGIGSLSNVTLGYYDPPSYYEPLEFEGPFEIISLSGTISPEDGK-PFV 79 (120)
T ss_dssp EEEEEEEEETTSBHHHHHHHHHHHHT-SSEEEEEEEEEEEEEEEEEETTTEEEEEEEESEEEEEEEEEEEEEETTE-EEE
T ss_pred CcEEEEEECCCCHHHHHHHHHHHHCCCcEEEEEEEeEEeEEEEEEecccCCcceEEecccEEEEEeEEEEECCCCC-Ccc
Confidence 69999999999999999999999999999999999999999999983 4688999999999999999985554 489
Q ss_pred ceEEEEeCCCccEEceecCCceeeeccEEEEEeeccCCceee
Q 037272 186 GLSIFLSGGQGQVVGGTVVGPLVASGPVILIAASFANAVFER 227 (327)
Q Consensus 186 HLHISLA~~dGqV~GGHL~G~lIAA~TVEVVI~sF~~~~yeR 227 (327)
|+||+|++.||+|+||||..+.+ ..++||+|.++....++|
T Consensus 80 HlHisl~~~~g~v~gGHl~~g~v-~~t~Ev~i~~~~~~~~~~ 120 (120)
T PF03479_consen 80 HLHISLADPDGQVFGGHLLEGTV-FATAEVVITELSGINFTR 120 (120)
T ss_dssp EEEEEEE-TTSEEEEEEEEEEEE-EEEEEEEEEEETTEEEEE
T ss_pred eEEEEEECCCCeEEeeEeCCCEE-eEEEEEEEEEecCccccC
Confidence 99999999999999999997776 448999999998888776
No 2
>COG1661 Predicted DNA-binding protein with PD1-like DNA-binding motif [General function prediction only]
Probab=99.94 E-value=1.7e-26 Score=200.62 Aligned_cols=121 Identities=19% Similarity=0.262 Sum_probs=114.3
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHcCCcEEEEeeeceeeeEEEeCCC-----CceeeeeccEeEEEeEeeecCCCCCC
Q 037272 108 NALRSHVLEVSGGADIVESMRNYASRRGRGVCVLSGSGTASNVTLRQPA-----GSVLTLHGRFEILSLSGTVLPPPAPP 182 (327)
Q Consensus 108 ~~mr~hVIrL~~GEDIvesI~~fAr~~~i~~~VLSaiGAVsnVTLr~p~-----g~~~tleG~FEILSLsGnis~~d~~p 182 (327)
..-|.|++||++|+|+++.|.+||++++|.+++++|||+|++++|++++ +.+++++++||||||.|||+..+
T Consensus 7 ~~gr~~~~Rld~G~d~~~~l~~~a~~~~i~aa~v~~iGal~~~~l~~~~~~~~~y~~~~~~e~~EvlSL~G~i~~~~--- 83 (141)
T COG1661 7 SSGRVIALRLDPGEDLFSELEAFAEQEDIHAAVVTAIGALRDAKLRYFDPEEKEYETIPVNEPLEVLSLLGNIALDD--- 83 (141)
T ss_pred ccceEEEEEeCCCccHHHHHHHHHHhcCceEEEEEEeeeeeeeEEEEecCCCCceEEEecCCcEEEEEecceeecCC---
Confidence 3458999999999999999999999999999999999999999999999 46899999999999999999997
Q ss_pred CCCceEEEEeCCCccEEceecCCceeeeccEEEEEeeccCCceeeccCCC
Q 037272 183 GAGGLSIFLSGGQGQVVGGTVVGPLVASGPVILIAASFANAVFERLPLPL 232 (327)
Q Consensus 183 ~~~HLHISLA~~dGqV~GGHL~G~lIAA~TVEVVI~sF~~~~yeRlp~e~ 232 (327)
++.|||++|++++|.++||||.++++.. |+||+|.++....+.|.+++.
T Consensus 84 p~~HlHa~l~~~~G~~~GGHL~~~~V~~-t~Ev~I~el~~~~~~R~~d~~ 132 (141)
T COG1661 84 PFVHLHAALGDENGITLGGHLLEGEVFP-TAEVFIRELPGELFRREFDPT 132 (141)
T ss_pred CcEEEEEEEecCCCcEEeeeecccEEeE-EEEEEEEEccccceeEecCCC
Confidence 5999999999999999999999999777 999999999999999999983
No 3
>PF02178 AT_hook: AT hook motif; InterPro: IPR017956 AT hooks are DNA-binding motifs with a preference for A/T rich regions. These motifs are found in a variety of proteins, including the high mobility group (HMG) proteins [], in DNA-binding proteins from plants [] and in hBRG1 protein, a central ATPase of the human switching/sucrose non-fermenting (SWI/SNF) remodeling complex []. High mobility group (HMG) proteins are a family of relatively low molecular weight non-histone components in chromatin []. HMG-I and HMG-Y (HMGA) are proteins of about 100 amino acid residues which are produced by the alternative splicing of a single gene. HMG-I/Y proteins bind preferentially to the minor groove of AT-rich regions in double-stranded DNA in a non-sequence specific manner [, ]. It is suggested that these proteins could function in nucleosome phasing and in the 3' end processing of mRNA transcripts. They are also involved in the transcription regulation of genes containing, or in close proximity to, AT-rich regions. ; GO: 0003677 DNA binding; PDB: 2EZE_A 2EZD_A 2EZF_A 2EZG_A.
Probab=89.03 E-value=0.16 Score=28.34 Aligned_cols=13 Identities=46% Similarity=0.843 Sum_probs=4.2
Q ss_pred CCCCCCCCCCCCC
Q 037272 83 RRPRGRPPGSKNK 95 (327)
Q Consensus 83 rrpRGRPpGSknK 95 (327)
+|+||||+.+.+|
T Consensus 1 ~r~RGRP~k~~~~ 13 (13)
T PF02178_consen 1 KRKRGRPRKNAKK 13 (13)
T ss_dssp S--SS--TT----
T ss_pred CCcCCCCccccCC
Confidence 5899999987654
No 4
>smart00384 AT_hook DNA binding domain with preference for A/T rich regions. Small DNA-binding motif first described in the high mobility group non-histone chromosomal protein HMG-I(Y).
Probab=75.89 E-value=1.8 Score=28.48 Aligned_cols=16 Identities=31% Similarity=0.661 Sum_probs=12.5
Q ss_pred CCCCCCCCCCCCCCCC
Q 037272 83 RRPRGRPPGSKNKPKP 98 (327)
Q Consensus 83 rrpRGRPpGSknKpk~ 98 (327)
+|+||||+..++....
T Consensus 1 kRkRGRPrK~~~~~~~ 16 (26)
T smart00384 1 KRKRGRPRKAPKDXXX 16 (26)
T ss_pred CCCCCCCCCCCCcccc
Confidence 5899999988776543
No 5
>PRK09469 glnA glutamine synthetase; Provisional
Probab=50.77 E-value=6.4 Score=40.72 Aligned_cols=88 Identities=18% Similarity=0.107 Sum_probs=54.1
Q ss_pred EEEEEecCCChHHHHHHHHHHHcCCcEEEEe-eece--eeeEEEeCCCC-----c----eeeeeccEeEEEeEeeecCCC
Q 037272 112 SHVLEVSGGADIVESMRNYASRRGRGVCVLS-GSGT--ASNVTLRQPAG-----S----VLTLHGRFEILSLSGTVLPPP 179 (327)
Q Consensus 112 ~hVIrL~~GEDIvesI~~fAr~~~i~~~VLS-aiGA--VsnVTLr~p~g-----~----~~tleG~FEILSLsGnis~~d 179 (327)
-.+-.++..+|++..|.+.++..+|.+-.+. =.|. --.++|.+.+. . ...++.-..=--|.-||.+++
T Consensus 181 y~~~~~~~~~~~~~~i~~~l~~~Gi~v~~~h~E~g~~GQ~Ei~l~~~d~L~aaD~~~~~k~~vk~va~~~g~~atFmpKP 260 (469)
T PRK09469 181 FPVPPVDSSQDIRSAMCLVMEEMGLVVEAHHHEVATAGQNEVATRFNTMTKKADEIQIYKYVVHNVAHAFGKTATFMPKP 260 (469)
T ss_pred cCCCcccchHHHHHHHHHHHHHCCCCcEEeeCCCCCCCeEEEeccCCCHHHHHHHHHHHHHHHHHHHHHhCCEEEEeccc
Confidence 4566788999999999999999998654433 3442 44555655441 1 111222222234566788875
Q ss_pred C---CCCCCceEEEEeCCCccEE
Q 037272 180 A---PPGAGGLSIFLSGGQGQVV 199 (327)
Q Consensus 180 ~---~p~~~HLHISLA~~dGqV~ 199 (327)
- .....|+|+||-+...++|
T Consensus 261 ~~~~~GsG~H~H~Sl~~~g~N~F 283 (469)
T PRK09469 261 MFGDNGSGMHCHMSLSKNGVNLF 283 (469)
T ss_pred cCCCCCceeEEEEeecCCCcccc
Confidence 1 1236899999988433555
No 6
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=49.11 E-value=1.1e+02 Score=23.64 Aligned_cols=42 Identities=21% Similarity=0.365 Sum_probs=32.2
Q ss_pred eEEEEEecCCChHHHHHHHHHHHcCC--cEEEEeeeceeeeEEEeC
Q 037272 111 RSHVLEVSGGADIVESMRNYASRRGR--GVCVLSGSGTASNVTLRQ 154 (327)
Q Consensus 111 r~hVIrL~~GEDIvesI~~fAr~~~i--~~~VLSaiGAVsnVTLr~ 154 (327)
+.-++.+.+|+-|-+.|..+|+++++ ..|.+.-.| .+-.|-+
T Consensus 11 q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~--~~k~l~~ 54 (71)
T PF02196_consen 11 QRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVG--EKKPLDW 54 (71)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEE--EEEEE-T
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcC--CCccccC
Confidence 67789999999999999999999997 677777667 4444544
No 7
>smart00455 RBD Raf-like Ras-binding domain.
Probab=45.56 E-value=68 Score=24.88 Aligned_cols=35 Identities=23% Similarity=0.470 Sum_probs=30.1
Q ss_pred eEEEEEecCCChHHHHHHHHHHHcCC--cEEEEeeec
Q 037272 111 RSHVLEVSGGADIVESMRNYASRRGR--GVCVLSGSG 145 (327)
Q Consensus 111 r~hVIrL~~GEDIvesI~~fAr~~~i--~~~VLSaiG 145 (327)
+...+.+.+|.-|.+.|...|+++++ ..|.+.-.|
T Consensus 10 ~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g 46 (70)
T smart00455 10 QRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRG 46 (70)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 67889999999999999999999998 556666555
No 8
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=40.66 E-value=75 Score=25.54 Aligned_cols=42 Identities=19% Similarity=0.260 Sum_probs=31.0
Q ss_pred eEEEEEecCCChHHHHHHHHHHHcCC--cEEEEeeeceeeeEEE
Q 037272 111 RSHVLEVSGGADIVESMRNYASRRGR--GVCVLSGSGTASNVTL 152 (327)
Q Consensus 111 r~hVIrL~~GEDIvesI~~fAr~~~i--~~~VLSaiGAVsnVTL 152 (327)
..-++.+.+|+-|.+.|+..|+++++ ..|.+.-.|.=.-+.+
T Consensus 10 ~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g~~k~l~~ 53 (73)
T cd01817 10 STTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVGGDKPLVL 53 (73)
T ss_pred CeEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEecCCccccc
Confidence 34578999999999999999999998 4555554454333333
No 9
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=36.67 E-value=69 Score=25.26 Aligned_cols=37 Identities=19% Similarity=0.317 Sum_probs=30.0
Q ss_pred eEEEEEecCCChHHHHHHHHHHHcCC--cEEEEeeecee
Q 037272 111 RSHVLEVSGGADIVESMRNYASRRGR--GVCVLSGSGTA 147 (327)
Q Consensus 111 r~hVIrL~~GEDIvesI~~fAr~~~i--~~~VLSaiGAV 147 (327)
+.-++.+.+|+-|.+.|+..|+++++ ..|.|.-.|.-
T Consensus 10 ~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~~~ 48 (72)
T cd01760 10 QRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLGLD 48 (72)
T ss_pred CeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEecCC
Confidence 56789999999999999999999998 45655555443
No 10
>PF03306 AAL_decarboxy: Alpha-acetolactate decarboxylase; InterPro: IPR005128 Alpha-acetolactate decarboxylase plays a dual role in the cell: (i) it catalyzes the second step of the acetoin pathway, (S)-2-hydroxy-2-methyl-3-oxobutanoate = (R)-2-acetoin + CO2 and thus potentially the internal pH of cells and (ii) it controls the pool of alpha-acetolactate during leucine and valine synthesis.; GO: 0047605 acetolactate decarboxylase activity, 0019751 polyol metabolic process, 0005789 endoplasmic reticulum membrane; PDB: 1XV2_B.
Probab=27.88 E-value=1e+02 Score=29.04 Aligned_cols=112 Identities=15% Similarity=0.201 Sum_probs=59.2
Q ss_pred EEEEecCCChHHHHHHHHHHHcCCcEEEEeeeceeeeEEEeCCCC---------ceeeeeccEeEEEeEeeec----CCC
Q 037272 113 HVLEVSGGADIVESMRNYASRRGRGVCVLSGSGTASNVTLRQPAG---------SVLTLHGRFEILSLSGTVL----PPP 179 (327)
Q Consensus 113 hVIrL~~GEDIvesI~~fAr~~~i~~~VLSaiGAVsnVTLr~p~g---------~~~tleG~FEILSLsGnis----~~d 179 (327)
-+.....=++|-+.|.+.....++ ...+-.-|..+.|++|-... ..+.-+-.||.=.++|++. |.-
T Consensus 82 ~~~~~~~~~~l~~~l~~~~~~~N~-f~airi~G~F~~v~~Rsv~~qe~Py~~l~e~~~~Q~~f~~~ni~GTlVGf~sP~~ 160 (220)
T PF03306_consen 82 TLDSPMSKEELEAKLDELLPSKNL-FYAIRIDGTFSSVKTRSVPKQEKPYPPLAEVAKNQPEFTFENIEGTLVGFYSPEY 160 (220)
T ss_dssp E-EEEEEHHHHHHHHHHHSS-TTS--EEEEEEEEEEEEEEE------SS---THHHHTT--EEEEEEEEEEEEEEEE-GG
T ss_pred ccCCCCCHHHHHHHHHHhcCCCce-EEEEEEEEEECeEEEEeccCccCCCCChhHHhccCceEEecCcEEEEEEEEcchh
Confidence 344556677888888887765555 45556689999999998651 1222234577777777765 321
Q ss_pred C-CCCCCceEEEEeCCCccEEceecCCceeeeccEEEEEeeccCCceeecc
Q 037272 180 A-PPGAGGLSIFLSGGQGQVVGGTVVGPLVASGPVILIAASFANAVFERLP 229 (327)
Q Consensus 180 ~-~p~~~HLHISLA~~dGqV~GGHL~G~lIAA~TVEVVI~sF~~~~yeRlp 229 (327)
- .-...++|+.+-+. -+.+||||.+-.+.. ++|-+..+.+.. -++|
T Consensus 161 ~~gi~v~G~HlHFls~-Dr~~GGHvld~~~~~--~~v~~~~~~~~~-l~lP 207 (220)
T PF03306_consen 161 MGGINVPGFHLHFLSD-DRTFGGHVLDFELDN--GTVEIDVFDDFE-LELP 207 (220)
T ss_dssp GBTTB-CEEEEEEEET-TSS-EEEEEEEEEEE--EEEEEEE-SEEE-EE--
T ss_pred ccccCCceEEEEEecC-CCCCCCCeEEEEece--EEEEEEecCCEE-EECc
Confidence 0 00123344444433 366899999866544 555555555544 3555
No 11
>PF14201 DUF4318: Domain of unknown function (DUF4318)
Probab=22.22 E-value=1.4e+02 Score=23.95 Aligned_cols=23 Identities=17% Similarity=0.479 Sum_probs=18.6
Q ss_pred CCChHHHHHHHHHHHcCCcEEEE
Q 037272 119 GGADIVESMRNYASRRGRGVCVL 141 (327)
Q Consensus 119 ~GEDIvesI~~fAr~~~i~~~VL 141 (327)
.-++|.++|.+||.+++..+=.+
T Consensus 16 s~e~i~~aIE~YC~~~~~~l~Fi 38 (74)
T PF14201_consen 16 SKEEICEAIEKYCIKNGESLEFI 38 (74)
T ss_pred CHHHHHHHHHHHHHHcCCceEEE
Confidence 56789999999999998765443
Done!