Query 037272
Match_columns 327
No_of_seqs 215 out of 568
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 17:57:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037272.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037272hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hx0_A Putative DNA-binding pr 100.0 1.2E-29 4E-34 219.5 16.7 128 102-234 10-139 (154)
2 2p6y_A Hypothetical protein VC 100.0 2.3E-29 8E-34 214.8 16.4 120 110-234 2-123 (142)
3 2dt4_A Hypothetical protein PH 100.0 7E-30 2.4E-34 217.6 11.0 119 111-233 10-133 (143)
4 3htn_A Putative DNA binding pr 100.0 1.4E-29 4.6E-34 218.1 11.3 121 111-234 16-141 (149)
5 2h6l_A Hypothetical protein; N 100.0 1.6E-29 5.5E-34 216.0 10.6 120 111-234 10-134 (146)
6 3hwu_A Putative DNA-binding pr 99.9 2.8E-27 9.5E-32 203.0 11.5 121 111-234 13-138 (147)
7 2ezd_A High mobility group pro 97.5 5.2E-05 1.8E-09 48.1 2.2 18 80-97 2-19 (26)
8 2k9i_A Plasmid PRN1, complete 33.9 36 0.0012 22.9 3.2 24 114-137 11-34 (55)
9 1xv2_A ALDC, hypothetical prot 33.9 1.2E+02 0.004 27.8 7.5 105 120-230 96-214 (237)
10 4i95_A Putative uncharacterize 29.4 43 0.0015 28.9 3.5 41 137-177 37-84 (142)
11 4gzv_A Hypothetical protein; A 25.6 54 0.0018 28.2 3.5 34 137-170 37-70 (142)
12 1t3g_A X-linked interleukin-1 21.0 63 0.0022 27.0 3.1 27 117-143 51-77 (159)
No 1
>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A
Probab=99.97 E-value=1.2e-29 Score=219.50 Aligned_cols=128 Identities=20% Similarity=0.372 Sum_probs=116.3
Q ss_pred eecCCCCCceEEEEEecCCChHHHHHHHHHHHcCC-cEEEEeeeceeeeEEEeCCCC-ceeeeeccEeEEEeEeeecCCC
Q 037272 102 VTRDSPNALRSHVLEVSGGADIVESMRNYASRRGR-GVCVLSGSGTASNVTLRQPAG-SVLTLHGRFEILSLSGTVLPPP 179 (327)
Q Consensus 102 it~~s~~~mr~hVIrL~~GEDIvesI~~fAr~~~i-~~~VLSaiGAVsnVTLr~p~g-~~~tleG~FEILSLsGnis~~d 179 (327)
++.++++.+|+|++||++||||+++|.+||++++| ++||++++|+|++|+|++++. .+++++|+|||+||+|||++.
T Consensus 10 ~~~~~~~~~r~~vlrL~~Gedl~~~i~~~~~~~gi~~a~v~s~iGsl~~~~l~~~~~~~~~~~~g~~EIlsl~Gti~~~- 88 (154)
T 2hx0_A 10 VSHHNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEATTSLTGTFEVISLNGTLELT- 88 (154)
T ss_dssp --CCSCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCSSCEEEEEEEEEEEEEEEEETT-
T ss_pred eccCCCCCccEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEeeeEEeEEEccCCCccEecCCcEEEEEeeeeEeCC-
Confidence 34577889999999999999999999999999999 677779999999999999994 578899999999999999985
Q ss_pred CCCCCCceEEEEeCCCccEEceecCCceeeeccEEEEEeeccCCceeeccCCCCC
Q 037272 180 APPGAGGLSIFLSGGQGQVVGGTVVGPLVASGPVILIAASFANAVFERLPLPLDD 234 (327)
Q Consensus 180 ~~p~~~HLHISLA~~dGqV~GGHL~G~lIAA~TVEVVI~sF~~~~yeRlp~e~~~ 234 (327)
..||||+|++.||+|+||||+.++++..|+||+|.+|.+..++|++|++..
T Consensus 89 ----~~HlHisl~~~~G~v~GGHL~~g~~V~~t~Ev~i~~~~~~~~~R~~D~eTG 139 (154)
T 2hx0_A 89 ----GEHLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGELPALTFSRQPCAISG 139 (154)
T ss_dssp ----EEEEEEEEECTTSCEEEEEECTTCEEEEEEEEEEEECTTEEEEEEECTTTS
T ss_pred ----CCEEEEEEECCCCCEEccccCCCCcEEEEEEEEEEEccCceEEEecCCCCC
Confidence 589999999999999999999876666799999999999899999998765
No 2
>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae}
Probab=99.96 E-value=2.3e-29 Score=214.84 Aligned_cols=120 Identities=24% Similarity=0.317 Sum_probs=110.3
Q ss_pred ceEEEEEecCCChHHHHHHHHHHHcCC-cEEEEeeeceeeeEEEeCCCC-ceeeeeccEeEEEeEeeecCCCCCCCCCce
Q 037272 110 LRSHVLEVSGGADIVESMRNYASRRGR-GVCVLSGSGTASNVTLRQPAG-SVLTLHGRFEILSLSGTVLPPPAPPGAGGL 187 (327)
Q Consensus 110 mr~hVIrL~~GEDIvesI~~fAr~~~i-~~~VLSaiGAVsnVTLr~p~g-~~~tleG~FEILSLsGnis~~d~~p~~~HL 187 (327)
||+|++||++||||+++|.+||++++| ++||++++|+|++++|++++. .+++++|+|||+||+|||++. ..||
T Consensus 2 ~r~~~lrL~~Gedl~~~i~~~~~~~~i~~a~v~~~iGsl~~~~l~~~~~~~~~~~~g~~EIlsl~Gti~~~-----~~Hl 76 (142)
T 2p6y_A 2 IHLIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADSVSTLQVSAPFEILSLSGTLTYQ-----HCHL 76 (142)
T ss_dssp CEEEEEEECTTCBHHHHHHHHHHHTTCSSEEEEEEEEEEEEEEEECTTSSCEEEECSCEEEEEEEEEECSS-----CEEE
T ss_pred CcEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEEEEEeEEEECCCCCccEecCCcEEEEEeEEEEeCC-----CCEE
Confidence 799999999999999999999999999 577779999999999999994 578899999999999999985 5899
Q ss_pred EEEEeCCCccEEceecCCceeeeccEEEEEeeccCCceeeccCCCCC
Q 037272 188 SIFLSGGQGQVVGGTVVGPLVASGPVILIAASFANAVFERLPLPLDD 234 (327)
Q Consensus 188 HISLA~~dGqV~GGHL~G~lIAA~TVEVVI~sF~~~~yeRlp~e~~~ 234 (327)
||+|++.||+|+||||+++++++.|+||+|.+|.+..|+|++|++..
T Consensus 77 Hisl~~~~G~v~GGHl~~g~~V~~t~Ev~i~~~~~~~~~R~~D~eTG 123 (142)
T 2p6y_A 77 HIAVADAQGRVWGGHLLEGNLINTTAELMIHHYPQHHFTREFDPNTG 123 (142)
T ss_dssp EEEEECTTSCEEEEEECTTCEECC-EEEEEEECTTEEEEEEEETTTT
T ss_pred EEEEECCCCCEEccccCCCCeEEEEEEEEEEEccCCeEEEeeCCCCC
Confidence 99999999999999999866677899999999999899999998764
No 3
>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii}
Probab=99.96 E-value=7e-30 Score=217.56 Aligned_cols=119 Identities=23% Similarity=0.376 Sum_probs=110.4
Q ss_pred eEEEEEecCCChHHHHHHHHHHHcCCcEEEEeeeceeeeEEEeCCCC-----ceeeeeccEeEEEeEeeecCCCCCCCCC
Q 037272 111 RSHVLEVSGGADIVESMRNYASRRGRGVCVLSGSGTASNVTLRQPAG-----SVLTLHGRFEILSLSGTVLPPPAPPGAG 185 (327)
Q Consensus 111 r~hVIrL~~GEDIvesI~~fAr~~~i~~~VLSaiGAVsnVTLr~p~g-----~~~tleG~FEILSLsGnis~~d~~p~~~ 185 (327)
|+|++||++||||+++|++||++++|..|+++++|+|++|+|++++. ..++++|+|||+||+|||++.++++ +.
T Consensus 10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~~~~~~~~g~~EIlsl~Gti~~~~g~p-~~ 88 (143)
T 2dt4_A 10 RTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKVIPLKGSYELISLIGNVSLKDGEP-FV 88 (143)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEECCSEEEEEEEEEEEEEETTEE-EE
T ss_pred CEEEEEECCCCcHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEEeecCccCcceeEeecCCEEEEEeEEEEECCCCCc-ee
Confidence 79999999999999999999999999888889999999999999883 3688999999999999999976654 89
Q ss_pred ceEEEEeCCCccEEceecCCceeeeccEEEEEeeccCCceeeccCCCC
Q 037272 186 GLSIFLSGGQGQVVGGTVVGPLVASGPVILIAASFANAVFERLPLPLD 233 (327)
Q Consensus 186 HLHISLA~~dGqV~GGHL~G~lIAA~TVEVVI~sF~~~~yeRlp~e~~ 233 (327)
||||+|++.||+|+||||..++ ++ |+||+|.+|.+..|+|+| ++.
T Consensus 89 HlHi~l~~~~G~v~GGHl~~g~-v~-t~Ev~i~~~~~~~~~R~~-~et 133 (143)
T 2dt4_A 89 HAHVSLGNEEGIVFGGHLVEGE-VF-VAEIFLQELKGEKIERKP-TKY 133 (143)
T ss_dssp EEEEEEECTTSCEEEEEEEEEE-EE-EEEEEEEEEEESCCEEBC-CTT
T ss_pred eEEEEEECCCCCEeCCCCCCCc-eE-EEEEEEEEcCCCeEEEeC-CCC
Confidence 9999999999999999999888 66 999999999999999999 654
No 4
>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.290.1.0
Probab=99.96 E-value=1.4e-29 Score=218.07 Aligned_cols=121 Identities=16% Similarity=0.242 Sum_probs=111.5
Q ss_pred eEEEEEecCCChHHHHHHHHHHHcCCcEEEEeeeceeeeEEEeCCCC-----ceeeeeccEeEEEeEeeecCCCCCCCCC
Q 037272 111 RSHVLEVSGGADIVESMRNYASRRGRGVCVLSGSGTASNVTLRQPAG-----SVLTLHGRFEILSLSGTVLPPPAPPGAG 185 (327)
Q Consensus 111 r~hVIrL~~GEDIvesI~~fAr~~~i~~~VLSaiGAVsnVTLr~p~g-----~~~tleG~FEILSLsGnis~~d~~p~~~ 185 (327)
|.|++||++||||+++|.+||++++|.+|+++++|+|++|+|++++. ..++++|+|||+||+|||++.+++ ++.
T Consensus 16 r~~~lrl~~Gedl~~~l~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EI~sl~Gti~~~dG~-p~~ 94 (149)
T 3htn_A 16 NKYIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTKAYDDKTFREQMEISNLTGNISSMNEQ-VYL 94 (149)
T ss_dssp TEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEECTTTCCEEEEEECSCEEEEEEEEEEEEETTE-EEE
T ss_pred CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEEEeeeEEEEccCCCcccceeEEecCceEEEEeEEEEEccCCC-ceE
Confidence 89999999999999999999999999988889999999999999883 378999999999999999998766 489
Q ss_pred ceEEEEeCCCccEEceecCCceeeeccEEEEEeeccCCceeeccCCCCC
Q 037272 186 GLSIFLSGGQGQVVGGTVVGPLVASGPVILIAASFANAVFERLPLPLDD 234 (327)
Q Consensus 186 HLHISLA~~dGqV~GGHL~G~lIAA~TVEVVI~sF~~~~yeRlp~e~~~ 234 (327)
|||++|++.||+|+||||..+ ++..|+||+|.++.. .++|.+|++..
T Consensus 95 HlH~sl~~~~G~v~gGHl~~g-~V~~t~Ei~i~~~~~-~~~R~~D~~tG 141 (149)
T 3htn_A 95 HLHITVGRSDYSALAGHLLSA-IQNGAGEFVVEDYSE-RISRTYNPDLG 141 (149)
T ss_dssp EEEEEEECTTSBEEEEEEEEE-EEEEEEEEEEEECCS-CCEEEEETTTT
T ss_pred EEEEEEECCCCCEEeEEeCCC-EEEEEEEEEEEEcCC-eeEEeeCCcCC
Confidence 999999999999999999988 556699999999988 79999998753
No 5
>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3
Probab=99.96 E-value=1.6e-29 Score=215.98 Aligned_cols=120 Identities=20% Similarity=0.255 Sum_probs=111.1
Q ss_pred eEEEEEecCCChHHHHHHHHHHHcCCcEEEEeeeceeeeEEEeCCCC-----ceeeeeccEeEEEeEeeecCCCCCCCCC
Q 037272 111 RSHVLEVSGGADIVESMRNYASRRGRGVCVLSGSGTASNVTLRQPAG-----SVLTLHGRFEILSLSGTVLPPPAPPGAG 185 (327)
Q Consensus 111 r~hVIrL~~GEDIvesI~~fAr~~~i~~~VLSaiGAVsnVTLr~p~g-----~~~tleG~FEILSLsGnis~~d~~p~~~ 185 (327)
|+|++||++||||+++|++||++++|..|+|+++|+|++|+|++++. .+++++|+|||+||+|||++.+++ ++.
T Consensus 10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EIlsl~Gti~~~dg~-p~~ 88 (146)
T 2h6l_A 10 KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKDSK-PFC 88 (146)
T ss_dssp EEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEETTE-EEE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEECCCCCCcceeEEEecCcEEEEEeEEEEECCCCC-cee
Confidence 79999999999999999999999999877789999999999999983 368999999999999999997765 489
Q ss_pred ceEEEEeCCCccEEceecCCceeeeccEEEEEeeccCCceeeccCCCCC
Q 037272 186 GLSIFLSGGQGQVVGGTVVGPLVASGPVILIAASFANAVFERLPLPLDD 234 (327)
Q Consensus 186 HLHISLA~~dGqV~GGHL~G~lIAA~TVEVVI~sF~~~~yeRlp~e~~~ 234 (327)
||||+|+ .||+|+||||.+++| .|+||+|.+|.+..|+|++|++..
T Consensus 89 HlHi~l~-~~G~v~gGHl~~g~V--~t~Evvi~~~~~~~~~R~~D~etg 134 (146)
T 2h6l_A 89 HIHVLLG-KDGEVYGGHLFSAEV--FACEVFVLPLSGEAPERAFDEQTG 134 (146)
T ss_dssp EEEEEEE-EBTEEEEEEEEEEEE--EEEEEEEEECBSCCCBEEECTTTS
T ss_pred eEEEEEC-CCCcEEeeecCCCEE--EEEEEEEEEcCCCcEEEeECCCCC
Confidence 9999999 999999999998885 599999999999999999998764
No 6
>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha}
Probab=99.94 E-value=2.8e-27 Score=203.05 Aligned_cols=121 Identities=15% Similarity=0.188 Sum_probs=108.7
Q ss_pred eEEEEEecCCChHHHHHHHHHHHcCCcEEEEeeeceeeeEEEeCCCC-----ceeeeeccEeEEEeEeeecCCCCCCCCC
Q 037272 111 RSHVLEVSGGADIVESMRNYASRRGRGVCVLSGSGTASNVTLRQPAG-----SVLTLHGRFEILSLSGTVLPPPAPPGAG 185 (327)
Q Consensus 111 r~hVIrL~~GEDIvesI~~fAr~~~i~~~VLSaiGAVsnVTLr~p~g-----~~~tleG~FEILSLsGnis~~d~~p~~~ 185 (327)
|.+++||++|+||+++|.+||++++|..+++++||++++++|++++. ...+++ ++||+||+|||++.+++ ++.
T Consensus 13 ~~~~~rL~~Gedl~~~l~~~~~~~~i~~a~v~~iGsl~~~~l~~~~~~~~~y~~~~~~-~~Ei~sl~Gtis~~dG~-p~~ 90 (147)
T 3hwu_A 13 TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYR-NVEMANMTGSIAWKEGK-PSI 90 (147)
T ss_dssp TEEEEEEETTCBHHHHHHHHHHHTTCSEEEEEEEEEEEEEEEEEEETTTTEEEEEEEE-EEEEEEEEEEEEEETTE-EEE
T ss_pred CEEEEEECCCChHHHHHHHHHHHcCCCEEEEEEEecccEEEEEeecCCcCccccEEec-CcEEEEEEEEEEcCCCC-ceE
Confidence 77999999999999999999999999999999999999999999883 356788 89999999999987765 499
Q ss_pred ceEEEEeCCCccEEceecCCceeeeccEEEEEeeccCCceeeccCCCCC
Q 037272 186 GLSIFLSGGQGQVVGGTVVGPLVASGPVILIAASFANAVFERLPLPLDD 234 (327)
Q Consensus 186 HLHISLA~~dGqV~GGHL~G~lIAA~TVEVVI~sF~~~~yeRlp~e~~~ 234 (327)
|||++|++.+|+|+||||..+.|...|+||+|..+.. .+.|.+|++..
T Consensus 91 HlH~~~~d~~g~v~GGHL~~g~V~~~t~Ei~i~~~~~-~~~R~~D~~tG 138 (147)
T 3hwu_A 91 HAHGTVTDGTFQGAGGHLLGLTVGTGSCEITVTVYPQ-RLDRFVDPEIQ 138 (147)
T ss_dssp EEEEEEECTTCCEEEEEEEEEEEEEEEEEEEEEEESS-CCBEEEETTTT
T ss_pred EEEEEEECCCCcEEeeEecCcEEEeEeEEEEEEEcCC-eEEEEECCcCC
Confidence 9999999999999999999886554599999998754 89999998754
No 7
>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*
Probab=97.46 E-value=5.2e-05 Score=48.12 Aligned_cols=18 Identities=61% Similarity=1.036 Sum_probs=15.5
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 037272 80 SSNRRPRGRPPGSKNKPK 97 (327)
Q Consensus 80 ~~~rrpRGRPpGSknKpk 97 (327)
+..|||||||.|||||.-
T Consensus 2 ptpKrpRgRpkGSKNk~~ 19 (26)
T 2ezd_A 2 PTPKRPRGRPKGSKNKGA 19 (26)
T ss_dssp CSCCCCSSCCTTCCCCSC
T ss_pred CCCcCCCCCcCcccccCc
Confidence 456999999999999954
No 8
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=33.93 E-value=36 Score=22.88 Aligned_cols=24 Identities=13% Similarity=0.032 Sum_probs=18.8
Q ss_pred EEEecCCChHHHHHHHHHHHcCCc
Q 037272 114 VLEVSGGADIVESMRNYASRRGRG 137 (327)
Q Consensus 114 VIrL~~GEDIvesI~~fAr~~~i~ 137 (327)
.|.|.=-+|+.+.|..+|++.+++
T Consensus 11 ~i~vrl~~el~~~l~~~a~~~g~s 34 (55)
T 2k9i_A 11 KLGVYIPQEWHDRLMEIAKEKNLT 34 (55)
T ss_dssp EEEEEECHHHHHHHHHHHHHHTCC
T ss_pred eEEEEcCHHHHHHHHHHHHHhCCC
Confidence 344555689999999999998863
No 9
>1xv2_A ALDC, hypothetical protein, similar to alpha- acetolactate decarboxylase; structural genomics, MCSG; 2.00A {Staphylococcus aureus subsp} SCOP: d.290.1.1
Probab=33.90 E-value=1.2e+02 Score=27.77 Aligned_cols=105 Identities=14% Similarity=0.214 Sum_probs=58.4
Q ss_pred CChHHHHHHHHHHHcCCcEEEEeeeceeeeEEEeCCCC---------ceeeeeccEeEEEeEeeec----CCC-CCCCCC
Q 037272 120 GADIVESMRNYASRRGRGVCVLSGSGTASNVTLRQPAG---------SVLTLHGRFEILSLSGTVL----PPP-APPGAG 185 (327)
Q Consensus 120 GEDIvesI~~fAr~~~i~~~VLSaiGAVsnVTLr~p~g---------~~~tleG~FEILSLsGnis----~~d-~~p~~~ 185 (327)
-+++-+.|.+.. ..--.+.+---|..++|++|---. .++.-+-.|++=.++|+|. |.- ..-...
T Consensus 96 ~~~l~~~i~~~~--s~N~f~airi~G~F~~v~~R~vp~Q~~Py~~l~e~~~~Q~~f~~~~v~GTivGF~tP~~~~Gi~v~ 173 (237)
T 1xv2_A 96 DDVFAQIKNEML--SENLFSAVKIYGTFKHMHVRMMPAQQPPYTRLIDSARRQPEEKRQDIRGAIVGFFTPELFHGVGSA 173 (237)
T ss_dssp HHHHHHHHHHSS--CTTSCEEEEEEEEEEEEEEECCCCCCSSCCCTHHHHTTCCEEEEEEEEEEEEEEEECGGGBTTBCS
T ss_pred HHHHHHHHHhhh--ccccEEEEEEEEEeCeEEEEecCCCCCCCCCHHHHhcCCceEEEeccEEEEEEEecchhhcccCCc
Confidence 344444444443 223456678889999999997541 1112222366666666664 432 111134
Q ss_pred ceEEEEeCCCccEEceecCCceeeeccEEEEEeeccCCceeeccC
Q 037272 186 GLSIFLSGGQGQVVGGTVVGPLVASGPVILIAASFANAVFERLPL 230 (327)
Q Consensus 186 HLHISLA~~dGqV~GGHL~G~lIAA~TVEVVI~sF~~~~yeRlp~ 230 (327)
++|+.+-+.|- .+||||..-.+.. +.|.+..+.+.. -++|.
T Consensus 174 G~HlHFisdDr-~~GGHVldf~~~~--~~~~~~~~~~~~-l~lP~ 214 (237)
T 1xv2_A 174 GFHIHFADDER-AYGGHVLDFEVDD--VVVEIQNFETFQ-QHFPV 214 (237)
T ss_dssp EEEEEEEETTS-SCEEEEEEEEEEE--EEEEEEECSEEE-EECCT
T ss_pred eeEEEEEcCCC-CCCcceEEEEecc--eEEEEeecccEE-EECCC
Confidence 45555555444 4899999866544 455555555543 36665
No 10
>4i95_A Putative uncharacterized protein; lipocalin-like domain of PF13924 family, structural genomics center for structural genomics, JCSG; HET: MSE; 1.81A {Bacteroides eggerthii} PDB: 4gzv_A
Probab=29.39 E-value=43 Score=28.89 Aligned_cols=41 Identities=24% Similarity=0.351 Sum_probs=32.9
Q ss_pred cEEEEeeeceeeeEEEeCCCCceeeeeccEeEEE-------eEeeecC
Q 037272 137 GVCVLSGSGTASNVTLRQPAGSVLTLHGRFEILS-------LSGTVLP 177 (327)
Q Consensus 137 ~~~VLSaiGAVsnVTLr~p~g~~~tleG~FEILS-------LsGnis~ 177 (327)
..=|||.=|...|+++..-.+.+++..|.|||.| +..|+.+
T Consensus 37 ~lKIlSdDgtF~Ni~m~~~~~aiIt~~GtY~~~SD~~Y~E~IeKni~l 84 (142)
T 4i95_A 37 TFKVLSDDGRIVNFTIRPGTDAIITGYGTYRQISAAAYKESIEKNIHL 84 (142)
T ss_dssp EEEEECTTSEEEEEECCTTSCCEEEEEEEEEEEETTEEEEEEEEESSS
T ss_pred cEEEEcCCCcEEEEEEecCCCcEEEEeEEEEecCCcceeeeecccccC
Confidence 4568999999999999943478999999999986 5566554
No 11
>4gzv_A Hypothetical protein; AN eight-stranded beta barrel, lipocalin family, structural joint center for structural genomics, JCSG; 1.95A {Bacteroides ovatus}
Probab=25.64 E-value=54 Score=28.23 Aligned_cols=34 Identities=29% Similarity=0.371 Sum_probs=28.9
Q ss_pred cEEEEeeeceeeeEEEeCCCCceeeeeccEeEEE
Q 037272 137 GVCVLSGSGTASNVTLRQPAGSVLTLHGRFEILS 170 (327)
Q Consensus 137 ~~~VLSaiGAVsnVTLr~p~g~~~tleG~FEILS 170 (327)
..=|||.=|+..|+++..-.+.+++..|.|||.|
T Consensus 37 ~~KIlS~DgtF~N~~m~~~~~aiIt~yGtY~l~S 70 (142)
T 4gzv_A 37 TFKVLSDDGRIVNFTIIPGADAIITGYGTYKQLT 70 (142)
T ss_dssp EEEEECTTSEEEEEECCTTSCCEEEEEEEEEEEE
T ss_pred ceEEECCCCcEEEEEEeCCCCcEEEEeEEEEecC
Confidence 4568999999999999665578899999999987
No 12
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=21.01 E-value=63 Score=27.01 Aligned_cols=27 Identities=11% Similarity=0.178 Sum_probs=24.2
Q ss_pred ecCCChHHHHHHHHHHHcCCcEEEEee
Q 037272 117 VSGGADIVESMRNYASRRGRGVCVLSG 143 (327)
Q Consensus 117 L~~GEDIvesI~~fAr~~~i~~~VLSa 143 (327)
+.+|++|++.|.+..++-.+.++|||-
T Consensus 51 ~~~G~~i~~~i~~~I~~Sr~~IvVlS~ 77 (159)
T 1t3g_A 51 LIPTGTYIEDVARCVDQSKRLIIVMTP 77 (159)
T ss_dssp CCCCTTHHHHHHHHHHTBSEEEEEECH
T ss_pred ccCccchHHHHHHHHHHcCEEEEEEcc
Confidence 679999999999998888889999985
Done!