Query 037272
Match_columns 327
No_of_seqs 215 out of 568
Neff 4.0
Searched_HMMs 13730
Date Mon Mar 25 17:57:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037272.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/037272hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2hx0a1 d.290.1.3 (A:6-141) Hy 100.0 6.8E-30 5E-34 215.0 16.5 125 106-235 2-128 (136)
2 d2h6la1 d.290.1.3 (A:1-138) Hy 99.9 5.8E-28 4.2E-32 202.1 10.7 119 111-233 10-133 (138)
3 d1c1yb_ d.15.1.5 (B:) c-Raf1 R 44.9 8.5 0.00062 28.0 3.4 32 111-142 12-45 (77)
4 d1wxma1 d.15.1.5 (A:8-80) A-Ra 40.7 8.2 0.00059 27.8 2.7 31 111-141 11-43 (73)
5 d1xv2a_ d.290.1.1 (A:) Hypothe 21.1 1.2E+02 0.0086 25.4 7.3 106 121-231 91-210 (232)
6 d2dexx3 d.126.1.5 (X:294-663) 16.2 43 0.0031 30.6 3.3 42 99-140 2-43 (370)
7 d1q7sa_ c.131.1.1 (A:) Bit1 (C 11.6 2.8E+02 0.02 20.5 6.7 45 108-153 49-100 (117)
8 d1khia2 b.40.4.5 (A:103-173) C 11.3 83 0.006 22.2 3.0 36 111-146 23-60 (71)
9 d1x6oa2 b.40.4.5 (A:87-165) C- 10.9 49 0.0035 24.0 1.6 33 115-147 36-69 (79)
10 d2pbea2 d.218.1.13 (A:1-135) A 10.8 68 0.005 24.9 2.6 33 121-153 5-38 (135)
No 1
>d2hx0a1 d.290.1.3 (A:6-141) Hypothetical protein STM3071 {Salmonella typhimurium [TaxId: 90371]}
Probab=99.97 E-value=6.8e-30 Score=214.97 Aligned_cols=125 Identities=19% Similarity=0.356 Sum_probs=116.0
Q ss_pred CCCCceEEEEEecCCChHHHHHHHHHHHcCC-cEEEEeeeceeeeEEEeCCC-CceeeeeccEeEEEeEeeecCCCCCCC
Q 037272 106 SPNALRSHVLEVSGGADIVESMRNYASRRGR-GVCVLSGSGTASNVTLRQPA-GSVLTLHGRFEILSLSGTVLPPPAPPG 183 (327)
Q Consensus 106 s~~~mr~hVIrL~~GEDIvesI~~fAr~~~i-~~~VLSaiGAVsnVTLr~p~-g~~~tleG~FEILSLsGnis~~d~~p~ 183 (327)
+.+..|.|++||++||||+++|.+||++++| +++|++++|++++|+|++|+ .....++|+|||+||+|||.+.+
T Consensus 2 ~~~~~R~~~lrl~~Gedl~~~i~~~~~~~~I~~a~V~~~iGs~~~~~~~~~~~~~~~~~~g~~Ei~sl~G~I~~~~---- 77 (136)
T d2hx0a1 2 NASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEATTSLTGTFEVISLNGTLELTG---- 77 (136)
T ss_dssp SCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCSSCEEEEEEEEEEEEEEEEETTE----
T ss_pred CCCCCcEEEEEECCCChHHHHHHHHHHHhCCCEEEEEEEeeeeEEEEEEeCCCCCcEEecCcEEEEEEEEEeccCC----
Confidence 4577899999999999999999999999998 67889999999999999999 56788999999999999999873
Q ss_pred CCceEEEEeCCCccEEceecCCceeeeccEEEEEeeccCCceeeccCCCCCC
Q 037272 184 AGGLSIFLSGGQGQVVGGTVVGPLVASGPVILIAASFANAVFERLPLPLDDN 235 (327)
Q Consensus 184 ~~HLHISLA~~dGqV~GGHL~G~lIAA~TVEVVI~sF~~~~yeRlp~e~~~~ 235 (327)
.|||++|++.||+|+||||+++++++.|+||+|.+|.+..++|.+|++..-
T Consensus 78 -~HlH~~~a~~~g~v~gGhL~~g~~v~~t~Eivi~~l~~~~~~R~~D~~tG~ 128 (136)
T d2hx0a1 78 -EHLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGELPALTFSRQPCAISGY 128 (136)
T ss_dssp -EEEEEEEECTTSCEEEEEECTTCEEEEEEEEEEEECTTEEEEEEECTTTSS
T ss_pred -CeEEEEEECCCCcEEeEEecCCcEEEEEEEEEEEEccCCceEEccCCCCCc
Confidence 799999999999999999999988998999999999999999999887653
No 2
>d2h6la1 d.290.1.3 (A:1-138) Hypothetical protein AF0104 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.95 E-value=5.8e-28 Score=202.09 Aligned_cols=119 Identities=21% Similarity=0.282 Sum_probs=109.7
Q ss_pred eEEEEEecCCChHHHHHHHHHHHcCCcEEEEeeeceeeeEEEeCCC-----CceeeeeccEeEEEeEeeecCCCCCCCCC
Q 037272 111 RSHVLEVSGGADIVESMRNYASRRGRGVCVLSGSGTASNVTLRQPA-----GSVLTLHGRFEILSLSGTVLPPPAPPGAG 185 (327)
Q Consensus 111 r~hVIrL~~GEDIvesI~~fAr~~~i~~~VLSaiGAVsnVTLr~p~-----g~~~tleG~FEILSLsGnis~~d~~p~~~ 185 (327)
|.|++||++||||+++|.+||++++|++|+++++|++++|+|++++ +..+.++|+|||+||+|||...+++| +.
T Consensus 10 r~~~~rl~~Gedl~~~l~~~~~~~~i~~a~is~iG~~~~~~l~~~~~~~~~~~~~~~~g~~Ei~sl~G~i~~~~g~p-~~ 88 (138)
T d2h6la1 10 KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKDSKP-FC 88 (138)
T ss_dssp EEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEETTEE-EE
T ss_pred CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEeecccceEEEecCCCCccceEecCCCEEEEEeEEEEEcCCCCc-EE
Confidence 8999999999999999999999999999999999999999999987 24779999999999999999888774 99
Q ss_pred ceEEEEeCCCccEEceecCCceeeeccEEEEEeeccCCceeeccCCCC
Q 037272 186 GLSIFLSGGQGQVVGGTVVGPLVASGPVILIAASFANAVFERLPLPLD 233 (327)
Q Consensus 186 HLHISLA~~dGqV~GGHL~G~lIAA~TVEVVI~sF~~~~yeRlp~e~~ 233 (327)
|+|+++++ +|+++||||..++++ ++|+++.++.+..++|.+|++.
T Consensus 89 HlH~~~~~-~g~~~gGHl~~~~v~--~~e~~i~~~~~~~~~R~~D~~t 133 (138)
T d2h6la1 89 HIHVLLGK-DGEVYGGHLFSAEVF--ACEVFVLPLSGEAPERAFDEQT 133 (138)
T ss_dssp EEEEEEEE-BTEEEEEEEEEEEEE--EEEEEEEECBSCCCBEEECTTT
T ss_pred EEEEEECC-CCCEEEEEeCccEEE--EEEEEEEEecCCceEEecCCcc
Confidence 99999997 799999999988765 5799999999999999998865
No 3
>d1c1yb_ d.15.1.5 (B:) c-Raf1 RBD {Human (Homo sapiens) [TaxId: 9606]}
Probab=44.93 E-value=8.5 Score=27.96 Aligned_cols=32 Identities=19% Similarity=0.378 Sum_probs=26.9
Q ss_pred eEEEEEecCCChHHHHHHHHHHHcCC--cEEEEe
Q 037272 111 RSHVLEVSGGADIVESMRNYASRRGR--GVCVLS 142 (327)
Q Consensus 111 r~hVIrL~~GEDIvesI~~fAr~~~i--~~~VLS 142 (327)
..=++.+.+|+-|-+.|.+.|+++++ ..|.+-
T Consensus 12 q~T~V~vrpG~tird~L~k~l~kRgl~~~~c~V~ 45 (77)
T d1c1yb_ 12 QRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVF 45 (77)
T ss_dssp EEEEEECCTTCBHHHHHHHHHHTTTCCGGGEEEE
T ss_pred CeEEEEecCCCCHHHHHHHHHHHcCCCHHHEEEE
Confidence 34578999999999999999999998 566553
No 4
>d1wxma1 d.15.1.5 (A:8-80) A-Raf proto-oncogene serine/threonine-protein kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.72 E-value=8.2 Score=27.79 Aligned_cols=31 Identities=26% Similarity=0.502 Sum_probs=26.2
Q ss_pred eEEEEEecCCChHHHHHHHHHHHcCC--cEEEE
Q 037272 111 RSHVLEVSGGADIVESMRNYASRRGR--GVCVL 141 (327)
Q Consensus 111 r~hVIrL~~GEDIvesI~~fAr~~~i--~~~VL 141 (327)
..=++.+.+|+-|-+.|.+.|+++++ ..|.+
T Consensus 11 q~T~V~vrpG~tir~~L~k~l~kRgl~~~~~~V 43 (73)
T d1wxma1 11 QRTVVTVRDGMSVYDSLDKALKVRGLNQDCCVV 43 (73)
T ss_dssp CEEEEECCSSCBSHHHHHHHHHTTTCCSSSEEE
T ss_pred CeEEEEecCCCCHHHHHHHHHHHcCCCHHHEEE
Confidence 34578999999999999999999998 45554
No 5
>d1xv2a_ d.290.1.1 (A:) Hypothetical protein SA2394 {Staphylococcus aureus [TaxId: 1280]}
Probab=21.06 E-value=1.2e+02 Score=25.37 Aligned_cols=106 Identities=16% Similarity=0.246 Sum_probs=59.0
Q ss_pred ChHHHHHHHHHHHcCCcEEEEeeeceeeeEEEeCCC-----C----ceeeeeccEeEEEeEeeec----CCCC-CCCCCc
Q 037272 121 ADIVESMRNYASRRGRGVCVLSGSGTASNVTLRQPA-----G----SVLTLHGRFEILSLSGTVL----PPPA-PPGAGG 186 (327)
Q Consensus 121 EDIvesI~~fAr~~~i~~~VLSaiGAVsnVTLr~p~-----g----~~~tleG~FEILSLsGnis----~~d~-~p~~~H 186 (327)
++|...|.+.....+ ..+-+-.-|..+.|++|--. + ..+.-+-.|+.-.++|++. |.-- .-....
T Consensus 91 ~~l~~~i~~~~~~~N-~f~airi~G~F~~v~~R~vp~q~~py~~l~e~~~~Q~~f~~~~v~GtlvGF~sP~~~~gi~v~G 169 (232)
T d1xv2a_ 91 DDVFAQIKNEMLSEN-LFSAVKIYGTFKHMHVRMMPAQQPPYTRLIDSARRQPEEKRQDIRGAIVGFFTPELFHGVGSAG 169 (232)
T ss_dssp HHHHHHHHHHSSCTT-SCEEEEEEEEEEEEEEECCCCCCSSCCCTHHHHTTCCEEEEEEEEEEEEEEEECGGGBTTBCSE
T ss_pred HHHHHHHHHhCcccc-ceEEEEEEEEeeeEEEEeecCCCCCCCCHHHHhccCceEEecccEEEEEEEecccccccccCCc
Confidence 444444444433222 57778889999999998754 1 1222344577777777764 3311 111234
Q ss_pred eEEEEeCCCccEEceecCCceeeeccEEEEEeeccCCceeeccCC
Q 037272 187 LSIFLSGGQGQVVGGTVVGPLVASGPVILIAASFANAVFERLPLP 231 (327)
Q Consensus 187 LHISLA~~dGqV~GGHL~G~lIAA~TVEVVI~sF~~~~yeRlp~e 231 (327)
+|+-+-+.| +.+||||.+-.+- -+.|.+..+.+.. -.+|.+
T Consensus 170 ~HlHFis~D-r~~GGHVld~~~~--~~~~~~~~~~~~~-l~lP~~ 210 (232)
T d1xv2a_ 170 FHIHFADDE-RAYGGHVLDFEVD--DVVVEIQNFETFQ-QHFPVN 210 (232)
T ss_dssp EEEEEEETT-SSCEEEEEEEEEE--EEEEEEEECSEEE-EECCTT
T ss_pred EEEEEECCC-CCCCCceeEEEee--eEEEEEEecCcEE-EECCCC
Confidence 555555443 5579999875543 4555565554433 355533
No 6
>d2dexx3 d.126.1.5 (X:294-663) Peptidylarginine deiminase Pad4, catalytic C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.23 E-value=43 Score=30.63 Aligned_cols=42 Identities=12% Similarity=0.202 Sum_probs=36.2
Q ss_pred CeeeecCCCCCceEEEEEecCCChHHHHHHHHHHHcCCcEEE
Q 037272 99 PIVVTRDSPNALRSHVLEVSGGADIVESMRNYASRRGRGVCV 140 (327)
Q Consensus 99 p~~it~~s~~~mr~hVIrL~~GEDIvesI~~fAr~~~i~~~V 140 (327)
|.|++..+-.....||.++...++.+++|++++++-++++.|
T Consensus 2 Pwimtpnt~~p~eV~v~~~~~n~~Fi~~v~~l~~~a~~~l~i 43 (370)
T d2dexx3 2 PWIMTPNTQPPQEVYACSIFENEDFLKSVTTLAMKAKCKLTI 43 (370)
T ss_dssp CCBCCCTTSCEEEEEECCCSSCHHHHHHHHHHHHHTTCEEEE
T ss_pred CeEecCCCCCceEEEEEeeccHHHHHHHHHHHHHHcCCceEe
Confidence 567777777888999999999999999999999998776654
No 7
>d1q7sa_ c.131.1.1 (A:) Bit1 (Cgi-147) {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.57 E-value=2.8e+02 Score=20.47 Aligned_cols=45 Identities=11% Similarity=0.169 Sum_probs=32.5
Q ss_pred CCceEEEEEecCCChHHHHHHHHHHHcCCcEEEEe-------eeceeeeEEEe
Q 037272 108 NALRSHVLEVSGGADIVESMRNYASRRGRGVCVLS-------GSGTASNVTLR 153 (327)
Q Consensus 108 ~~mr~hVIrL~~GEDIvesI~~fAr~~~i~~~VLS-------aiGAVsnVTLr 153 (327)
.+++.+|++++. ++-+..|.+-|++.++...++. .-|+++-+-|+
T Consensus 49 ~g~~KIvl~v~~-e~~l~~l~~~a~~~~l~~~~i~DAG~Tei~~gt~Tvlaig 100 (117)
T d1q7sa_ 49 CGQPKVVVKAPD-EETLIALLAHAKMLGLTVSLIQDAGRTQIAPGSQTVLGIG 100 (117)
T ss_dssp TTCCEEEEEESS-HHHHHHHHHHHHHTTCCEEEEEECSSSSEEEEEEEEEEEE
T ss_pred CCCcEEEEecCC-HHHHHHHHHHHHHCCCCEEEEEcCCCcccCCCCeEEEEEC
Confidence 678999999965 6667789999999998665544 44555555554
No 8
>d1khia2 b.40.4.5 (A:103-173) C-terminal domain of eIF5a homologue (Hex1) {Filamentous fungi (Neurospora crassa) [TaxId: 5141]}
Probab=11.34 E-value=83 Score=22.21 Aligned_cols=36 Identities=17% Similarity=0.141 Sum_probs=26.7
Q ss_pred eEEEEEecCCChHHHHHHHHHHHcC--CcEEEEeeece
Q 037272 111 RSHVLEVSGGADIVESMRNYASRRG--RGVCVLSGSGT 146 (327)
Q Consensus 111 r~hVIrL~~GEDIvesI~~fAr~~~--i~~~VLSaiGA 146 (327)
..-=|+|.+..||.+.|.+-..... +.+.|+|+.|-
T Consensus 23 ~keDlkv~~~~el~~~I~~~F~~gkd~v~VtV~samGe 60 (71)
T d1khia2 23 VKQNLPVIDQSSLWNRLQKAFESGRGSVRVLVVSDHGR 60 (71)
T ss_dssp EEEEEEBCCSTTHHHHHHHHHTTTGGGEEEEEEEETTE
T ss_pred ccccccCCChhHHHHHHHHHHHcCCCcEEEEEEccCCE
Confidence 3445677677799999998766543 57899999885
No 9
>d1x6oa2 b.40.4.5 (A:87-165) C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a) {Leishmania infantum [TaxId: 5671]}
Probab=10.86 E-value=49 Score=24.02 Aligned_cols=33 Identities=21% Similarity=0.382 Sum_probs=24.8
Q ss_pred EEecCCChHHHHHHH-HHHHcCCcEEEEeeecee
Q 037272 115 LEVSGGADIVESMRN-YASRRGRGVCVLSGSGTA 147 (327)
Q Consensus 115 IrL~~GEDIvesI~~-fAr~~~i~~~VLSaiGAV 147 (327)
|+|++..||.+.|.+ |-....+-+.|+||.|-=
T Consensus 36 lkLP~d~elg~~I~~~f~~gkdl~VtVlsAmGEE 69 (79)
T d1x6oa2 36 LDMPPDPALATQIKEQFDSGKDVLVVVVSAMGTE 69 (79)
T ss_dssp CBCCSCHHHHHHHHHHHHTTCCEEEEEEEETTEE
T ss_pred cCCCCchHHHHHHHHHHhCCCcEEEEEehhCCcc
Confidence 556677899999987 544456789999998853
No 10
>d2pbea2 d.218.1.13 (A:1-135) Aminoglycoside 6-adenylyltransferase AadK {Bacillus subtilis [TaxId: 1423]}
Probab=10.79 E-value=68 Score=24.88 Aligned_cols=33 Identities=18% Similarity=0.310 Sum_probs=19.1
Q ss_pred ChHHHHHHHHHHHcC-CcEEEEeeeceeeeEEEe
Q 037272 121 ADIVESMRNYASRRG-RGVCVLSGSGTASNVTLR 153 (327)
Q Consensus 121 EDIvesI~~fAr~~~-i~~~VLSaiGAVsnVTLr 153 (327)
+++++.|.+||++.. |.+.+|+|+=+=.++.--
T Consensus 5 ~eml~~I~~~a~~d~~I~Av~L~GSRan~~~~~D 38 (135)
T d2pbea2 5 QEMMDIFLDFALNDERIRLVTLEGSRTNRNIPPD 38 (135)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEC-----------
T ss_pred HHHHHHHHHHHhcCCCEEEEEEecccCCCCCCCC
Confidence 689999999998765 599999988665555443
Done!