BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037278
(449 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WGP|A Chain A, Solution Structure Of The Cnmp-Binding Domain From
Arabidopsis Thaliana Cyclic Nucleotide-Regulated Ion
Channel
Length = 137
Score = 128 bits (322), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 66/124 (53%), Positives = 92/124 (74%), Gaps = 6/124 (4%)
Query: 233 HVPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRT 292
VP+F + +E++L +C+ LK L+T +SY+ +EGDPV+EM FI RG+L ++ TT+ R+
Sbjct: 10 RVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESV-TTDGGRS 68
Query: 293 GVY----LQAGDFFGEELLMWALETQSSSENLPISTRTVRTLTEVEGLALMADDLKFAAS 348
G Y L+ GDF G+ELL WAL+ +S S NLP STRTV+ LTEVE AL+AD+LKF AS
Sbjct: 69 GFYNRSLLKEGDFCGDELLTWALDPKSGS-NLPSSTRTVKALTEVEAFALIADELKFVAS 127
Query: 349 RFRQ 352
+FR+
Sbjct: 128 QFRR 131
>pdb|3BEH|A Chain A, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|B Chain B, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|C Chain C, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|3BEH|D Chain D, Structure Of A Bacterial Cyclic Nucleotide Regulated Ion
Channel
pdb|2ZD9|A Chain A, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|B Chain B, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|C Chain C, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
pdb|2ZD9|D Chain D, Structure Of A Bacterial Cyclic-Nucleotide Regulated Ion
Channel
Length = 355
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 64/148 (43%), Gaps = 20/148 (13%)
Query: 228 YMLAGHVPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTT 287
+ L VP+F +L E+ +L+ A + I + G+P MFF+ G +++ T
Sbjct: 227 WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGS-VSVATP 285
Query: 288 NRKRTGVYLQAGDFFGEELLMWALETQSSSENLPISTRTVRTLTEVEGLALMADDLKFAA 347
N V L G FFGE L+ S E + TV T V L+L + D +
Sbjct: 286 NP----VELGPGAFFGEMALI-------SGEP---RSATVSAATTVSLLSLHSADFQMLC 331
Query: 348 SRFRQMNGEQLEHILRFYAPEWRTWAAS 375
S + ++ I R A E R AAS
Sbjct: 332 S-----SSPEIAEIFRKTALERRGAAAS 354
>pdb|3CLP|A Chain A, M. Loti Cyclic-Nucleotide Binding Domain Mutant 2
pdb|3CLP|C Chain C, M. Loti Cyclic-Nucleotide Binding Domain Mutant 2
Length = 140
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 43/148 (29%), Positives = 66/148 (44%), Gaps = 20/148 (13%)
Query: 228 YMLAGHVPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTT 287
+ L VP+F +L E+ +L+ A + I + G+P MFF+ G +++ T
Sbjct: 12 WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGS-VSVATP 70
Query: 288 NRKRTGVYLQAGDFFGEELLMWALETQSSSENLPISTRTVRTLTEVEGLALMADDLKFAA 347
N V L G FFGE L+ + E +S+ TV T V L+L + D +
Sbjct: 71 NP----VELGPGAFFGEMALI-SGEPESA---------TVSAATTVSLLSLHSADFQMLC 116
Query: 348 SRFRQMNGEQLEHILRFYAPEWRTWAAS 375
S + ++ I R A E R AAS
Sbjct: 117 S-----SSPEIAEIFRKTALERRGAAAS 139
>pdb|1U12|A Chain A, M. Loti Cyclic Nucleotide Binding Domain Mutant
pdb|1U12|B Chain B, M. Loti Cyclic Nucleotide Binding Domain Mutant
Length = 138
Score = 42.4 bits (98), Expect = 5e-04, Method: Composition-based stats.
Identities = 43/148 (29%), Positives = 66/148 (44%), Gaps = 20/148 (13%)
Query: 228 YMLAGHVPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTT 287
+ L VP+F +L E+ +L+ A + I + G+P MFF+ G +++ T
Sbjct: 10 WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGS-VSVATP 68
Query: 288 NRKRTGVYLQAGDFFGEELLMWALETQSSSENLPISTRTVRTLTEVEGLALMADDLKFAA 347
N V L G FFGE L+ + E +S+ TV T V L+L + D +
Sbjct: 69 NP----VELGPGAFFGEMALI-SGEPRSA---------TVSAATTVSLLSLHSADFQMLC 114
Query: 348 SRFRQMNGEQLEHILRFYAPEWRTWAAS 375
S + ++ I R A E R AAS
Sbjct: 115 S-----SSPEIAEIFRKTALEARGAAAS 137
>pdb|1VP6|A Chain A, M.Loti Ion Channel Cylic Nucleotide Binding Domain
pdb|1VP6|C Chain C, M.Loti Ion Channel Cylic Nucleotide Binding Domain
Length = 138
Score = 42.4 bits (98), Expect = 6e-04, Method: Composition-based stats.
Identities = 43/148 (29%), Positives = 66/148 (44%), Gaps = 20/148 (13%)
Query: 228 YMLAGHVPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTT 287
+ L VP+F +L E+ +L+ A + I + G+P MFF+ G +++ T
Sbjct: 10 WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGS-VSVATP 68
Query: 288 NRKRTGVYLQAGDFFGEELLMWALETQSSSENLPISTRTVRTLTEVEGLALMADDLKFAA 347
N V L G FFGE L+ + E +S+ TV T V L+L + D +
Sbjct: 69 N----PVELGPGAFFGEMALI-SGEPRSA---------TVSAATTVSLLSLHSADFQMLC 114
Query: 348 SRFRQMNGEQLEHILRFYAPEWRTWAAS 375
S + ++ I R A E R AAS
Sbjct: 115 S-----SSPEIAEIFRKTALERRGAAAS 137
>pdb|2K0G|A Chain A, Solution Structure Of A Bacterial Cyclic Nucleotide-
Activated K+ Channel Binding Domain In Complex With Camp
pdb|2KXL|A Chain A, Solution Structure Of A Bacterial Cyclic
Nucleotide-Activated K+ Channel Binding Domain In The
Unliganded State
Length = 142
Score = 42.4 bits (98), Expect = 6e-04, Method: Composition-based stats.
Identities = 43/148 (29%), Positives = 66/148 (44%), Gaps = 20/148 (13%)
Query: 228 YMLAGHVPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTT 287
+ L VP+F +L E+ +L+ A + I + G+P MFF+ G +++ T
Sbjct: 14 WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGS-VSVATP 72
Query: 288 NRKRTGVYLQAGDFFGEELLMWALETQSSSENLPISTRTVRTLTEVEGLALMADDLKFAA 347
N V L G FFGE L+ + E +S+ TV T V L+L + D +
Sbjct: 73 NP----VELGPGAFFGEMALI-SGEPRSA---------TVSAATTVSLLSLHSADFQMLC 118
Query: 348 SRFRQMNGEQLEHILRFYAPEWRTWAAS 375
S + ++ I R A E R AAS
Sbjct: 119 S-----SSPEIAEIFRKTALERRGAAAS 141
>pdb|3CL1|A Chain A, M. Loti Cyclic-Nucleotide Binding Domain, Cyclic-Gmp Bound
pdb|3CL1|B Chain B, M. Loti Cyclic-Nucleotide Binding Domain, Cyclic-Gmp Bound
Length = 140
Score = 42.0 bits (97), Expect = 7e-04, Method: Composition-based stats.
Identities = 43/148 (29%), Positives = 66/148 (44%), Gaps = 20/148 (13%)
Query: 228 YMLAGHVPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTT 287
+ L VP+F +L E+ +L+ A + I + G+P MFF+ G +++ T
Sbjct: 12 WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGS-VSVATP 70
Query: 288 NRKRTGVYLQAGDFFGEELLMWALETQSSSENLPISTRTVRTLTEVEGLALMADDLKFAA 347
N V L G FFGE L+ + E +S+ TV T V L+L + D +
Sbjct: 71 N----PVELGPGAFFGEMALI-SGEPRSA---------TVSAATTVSLLSLHSADFQMLC 116
Query: 348 SRFRQMNGEQLEHILRFYAPEWRTWAAS 375
S + ++ I R A E R AAS
Sbjct: 117 S-----SSPEIAEIFRKTALERRGAAAS 139
>pdb|3CO2|A Chain A, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|B Chain B, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|C Chain C, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
pdb|3CO2|D Chain D, Mlotik1 Ion Channel Cyclic-Nucleotide Binding Domain
Mutant
Length = 140
Score = 42.0 bits (97), Expect = 8e-04, Method: Composition-based stats.
Identities = 45/148 (30%), Positives = 65/148 (43%), Gaps = 20/148 (13%)
Query: 228 YMLAGHVPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTT 287
+ L VP+F +L E+ +L+ A + I + G+P MFF+ G +++ T
Sbjct: 12 WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGS-VSVATP 70
Query: 288 NRKRTGVYLQAGDFFGEELLMWALETQSSSENLPISTRTVRTLTEVEGLALMADDLKFAA 347
N V L G FFGE L+ S E P S TV T V L+L + D +
Sbjct: 71 N----PVELGPGAFFGEMALI-------SGE--PWSA-TVSAATTVSLLSLHSADFQMLC 116
Query: 348 SRFRQMNGEQLEHILRFYAPEWRTWAAS 375
S + ++ I R A E R AAS
Sbjct: 117 S-----SSPEIAEIFRKTALERRGAAAS 139
>pdb|3SHR|A Chain A, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
pdb|3SHR|B Chain B, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
Novel Site Of Interchain Communication
Length = 299
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 234 VPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTG 293
VP F E+ILS++ D L++ Y YI ++G F I++G++ + +
Sbjct: 162 VPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDP 221
Query: 294 VYLQA---GDFFGEELL 307
V+L+ GD+FGE+ L
Sbjct: 222 VFLRTLGKGDWFGEKAL 238
>pdb|2OZ6|A Chain A, Crystal Structure Of Virulence Factor Regulator From
Pseudomonas Aeruginosa In Complex With Camp
Length = 207
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 257 YTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGV--YLQAGDFFGE 304
YTA+S I GD +FFI +G + + + R + YL +GDFFGE
Sbjct: 18 YTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGE 67
>pdb|3BPZ|A Chain A, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|B Chain B, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|C Chain C, Hcn2-I 443-460 E502k In The Presence Of Camp
pdb|3BPZ|D Chain D, Hcn2-I 443-460 E502k In The Presence Of Camp
Length = 202
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Query: 220 KAVFNLLLYMLAGHVPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRG 279
+ + N L +P+F++ + ++ M LK ++ YI +EG +M+FI G
Sbjct: 63 EKIVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHG 122
Query: 280 QLLTMKTTNRKRTGVYLQAGDFFGEELLM 308
+ + N++ + L G +FGE L+
Sbjct: 123 VVSVLTKGNKE---MKLSDGSYFGEICLL 148
>pdb|3U10|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 222 VFNLLLYMLAGHVPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQL 281
+ N L +P+F++ + ++ M LK ++ YI +EG +M+FI G +
Sbjct: 68 IVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVV 127
Query: 282 LTMKTTNRKRTGVYLQAGDFFGEELLM 308
+ N++ + L G +FGE L+
Sbjct: 128 SVLTKGNKE---MKLSDGSYFGEICLL 151
>pdb|2Q0A|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
pdb|2Q0A|B Chain B, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 200
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 222 VFNLLLYMLAGHVPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQL 281
+ N L +P+F++ + ++ M LK ++ YI +EG +M+FI G +
Sbjct: 63 IVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVV 122
Query: 282 LTMKTTNRKRTGVYLQAGDFFGEELLM 308
+ N++ + L G +FGE L+
Sbjct: 123 SVLTKGNKE---MKLSDGSYFGEICLL 146
>pdb|3FFQ|A Chain A, Hcn2i 443-640 Apo-State
pdb|3FFQ|B Chain B, Hcn2i 443-640 Apo-State
Length = 202
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 222 VFNLLLYMLAGHVPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQL 281
+ N L +P+F++ + ++ M LK ++ YI +EG +M+FI G +
Sbjct: 65 IVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVV 124
Query: 282 LTMKTTNRKRTGVYLQAGDFFGEELLM 308
+ N++ + L G +FGE L+
Sbjct: 125 SVLTKGNKE---MKLSDGSYFGEICLL 148
>pdb|1Q3E|A Chain A, Hcn2j 443-645 In The Presence Of Cgmp
pdb|1Q3E|B Chain B, Hcn2j 443-645 In The Presence Of Cgmp
Length = 207
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 222 VFNLLLYMLAGHVPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQL 281
+ N L +P+F++ + ++ M LK ++ YI +EG +M+FI G +
Sbjct: 65 IVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVV 124
Query: 282 LTMKTTNRKRTGVYLQAGDFFGEELLM 308
+ N++ + L G +FGE L+
Sbjct: 125 SVLTKGNKE---MKLSDGSYFGEICLL 148
>pdb|3ETQ|A Chain A, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C-
Terminal Region From Amino Acids 443-630 Including
C508n, C584s, And C601s Mutations
pdb|3ETQ|B Chain B, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C-
Terminal Region From Amino Acids 443-630 Including
C508n, C584s, And C601s Mutations
Length = 204
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 230 LAGHVPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNR 289
L +P+F++ + ++ M LK ++ YI +EG +M+FI G + + N+
Sbjct: 75 LVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNK 134
Query: 290 KRTGVYLQAGDFFGE 304
+ + L G +FGE
Sbjct: 135 E---MKLSDGSYFGE 146
>pdb|4HBN|A Chain A, Crystal Structure Of The Human Hcn4 Channel C-terminus
Carrying The S672r Mutation
Length = 205
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 220 KAVFNLLLYMLAGHVPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRG 279
+ + N L +P+F++ + ++ M L+ ++ YI +EG +M+FI G
Sbjct: 60 EEIINFNCRKLVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHG 119
Query: 280 QLLTMKTTNRKRTGVYLQAGDFFGEELLM 308
+ + N++ L G +FGE L+
Sbjct: 120 VVSVLTKGNKE---TKLADGSYFGEICLL 145
>pdb|3U11|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
pdb|3U11|B Chain B, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 220 KAVFNLLLYMLAGHVPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRG 279
+ + N L +P+F++ + ++ M L+ ++ YI +EG +M+FI G
Sbjct: 66 EEIINFNXRKLVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHG 125
Query: 280 QLLTMKTTNRKRTGVYLQAGDFFGEELLM 308
+ + N++ L G +FGE L+
Sbjct: 126 VVSVLTKGNKE---TKLADGSYFGEICLL 151
>pdb|3OTF|A Chain A, Structural Basis For The Camp-Dependent Gating In Human
Hcn4 Channel
Length = 220
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 220 KAVFNLLLYMLAGHVPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRG 279
+ + N L +P+F++ + ++ M L+ ++ YI +EG +M+FI G
Sbjct: 60 EEIINFNCRKLVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHG 119
Query: 280 QLLTMKTTNRKRTGVYLQAGDFFGEELLM 308
++++ T K T L G +FGE L+
Sbjct: 120 -VVSVLTKGNKETK--LADGSYFGEICLL 145
>pdb|3U0Z|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
pdb|3U0Z|B Chain B, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 222 VFNLLLYMLAGHVPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQL 281
+ N L +P+F++ + ++ M L+ ++ YI +EG +M+FI G
Sbjct: 68 IVNFNCRKLVATMPLFANADPNFVTAMLSKLRFEVFQPGDYIIREGAVGKKMYFIQHGVA 127
Query: 282 LTMKTTNRKRTGVYLQAGDFFGEELLM 308
+ ++++ + L G +FGE L+
Sbjct: 128 GVITKSSKE---MKLTDGSYFGEICLL 151
>pdb|1Q43|A Chain A, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine
Derivative
pdb|1Q43|B Chain B, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine
Derivative
pdb|1Q5O|A Chain A, Hcn2j 443-645 In The Presence Of Camp, Selenomethionine
Derivative
Length = 207
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Query: 222 VFNLLLYMLAGHVPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQL 281
+ N L P+F++ + ++ LK ++ YI +EG + +FI G +
Sbjct: 65 IVNFNCRKLVASXPLFANADPNFVTAXLTKLKFEVFQPGDYIIREGTIGKKXYFIQHGVV 124
Query: 282 LTMKTTNRKRTGVYLQAGDFFGEELLM 308
+ N++ L G +FGE L+
Sbjct: 125 SVLTKGNKEXK---LSDGSYFGEICLL 148
>pdb|2PQQ|A Chain A, Structural Genomics, The Crystal Structure Of The
N-Terminal Domain Of A Transcriptional Regulator From
Streptomyces Coelicolor A3(2)
pdb|2PQQ|B Chain B, Structural Genomics, The Crystal Structure Of The
N-Terminal Domain Of A Transcriptional Regulator From
Streptomyces Coelicolor A3(2)
pdb|2PQQ|C Chain C, Structural Genomics, The Crystal Structure Of The
N-Terminal Domain Of A Transcriptional Regulator From
Streptomyces Coelicolor A3(2)
pdb|2PQQ|D Chain D, Structural Genomics, The Crystal Structure Of The
N-Terminal Domain Of A Transcriptional Regulator From
Streptomyces Coelicolor A3(2)
Length = 149
Score = 30.4 bits (67), Expect = 2.2, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 12/112 (10%)
Query: 235 PMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGV 294
P+F+ +++ +E+ S +V + EGDP ++ +T G++ +T+ R
Sbjct: 11 PLFAALDDEQSAELRASXSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENX 70
Query: 295 YLQAG--DFFGEELLMWALETQSSSENLPISTRTVRTLTEVEGLALMADDLK 344
G + GE L + T T LTEV+ LAL DL+
Sbjct: 71 LAVVGPSELIGELSLF----------DPGPRTATGTALTEVKLLALGHGDLQ 112
>pdb|2PTM|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 198
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 230 LAGHVPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNR 289
L VP F + ++ + L+ ++ Y+ QEG MFFI +G + + +
Sbjct: 72 LVASVPFFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIMSDGV 131
Query: 290 KRTGVYLQAGDFFGEELLM 308
T L G +FGE L+
Sbjct: 132 IATS--LSDGSYFGEICLL 148
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,010,905
Number of Sequences: 62578
Number of extensions: 397704
Number of successful extensions: 1444
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1420
Number of HSP's gapped (non-prelim): 30
length of query: 449
length of database: 14,973,337
effective HSP length: 102
effective length of query: 347
effective length of database: 8,590,381
effective search space: 2980862207
effective search space used: 2980862207
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)