Query 037278
Match_columns 449
No_of_seqs 568 out of 2374
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 10:36:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037278.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037278hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0498 K+-channel ERG and rel 100.0 1E-69 2.3E-74 580.4 24.3 370 51-433 63-622 (727)
2 PLN03192 Voltage-dependent pot 100.0 3E-36 6.5E-41 337.3 30.9 313 29-363 21-499 (823)
3 KOG0500 Cyclic nucleotide-gate 100.0 6.8E-33 1.5E-37 278.9 17.7 250 98-358 23-431 (536)
4 KOG0499 Cyclic nucleotide-gate 100.0 2.2E-30 4.7E-35 264.3 21.6 280 54-354 216-645 (815)
5 KOG0501 K+-channel KCNQ [Inorg 100.0 2.1E-30 4.6E-35 263.5 13.1 115 234-360 553-668 (971)
6 PRK09392 ftrB transcriptional 99.9 7.1E-20 1.5E-24 175.8 20.9 196 232-443 10-215 (236)
7 PRK11753 DNA-binding transcrip 99.8 4.9E-19 1.1E-23 166.7 21.9 192 238-442 6-210 (211)
8 PRK10402 DNA-binding transcrip 99.8 3.4E-19 7.3E-24 170.5 17.4 188 242-443 21-212 (226)
9 PRK11161 fumarate/nitrate redu 99.8 2.6E-18 5.6E-23 164.8 20.3 194 235-443 19-227 (235)
10 TIGR03697 NtcA_cyano global ni 99.8 1E-17 2.2E-22 155.4 16.5 172 260-443 1-186 (193)
11 PRK09391 fixK transcriptional 99.8 2.4E-17 5.1E-22 158.2 17.4 180 247-443 33-223 (230)
12 PRK13918 CRP/FNR family transc 99.8 6.4E-17 1.4E-21 151.3 18.8 172 251-443 5-192 (202)
13 COG0664 Crp cAMP-binding prote 99.7 3.4E-16 7.5E-21 145.9 21.6 194 234-441 5-212 (214)
14 cd00038 CAP_ED effector domain 99.6 2.3E-14 5.1E-19 119.2 13.7 110 236-355 1-112 (115)
15 smart00100 cNMP Cyclic nucleot 99.5 1.6E-13 3.5E-18 114.6 14.8 115 236-358 1-117 (120)
16 PF00027 cNMP_binding: Cyclic 99.5 1E-13 2.3E-18 111.7 11.6 88 255-352 2-91 (91)
17 PLN02868 acyl-CoA thioesterase 99.3 3.4E-11 7.5E-16 125.4 13.8 108 231-350 10-118 (413)
18 KOG0614 cGMP-dependent protein 99.2 3.7E-11 8.1E-16 123.2 7.2 122 232-363 275-400 (732)
19 COG2905 Predicted signal-trans 99.1 1.1E-09 2.3E-14 113.9 16.0 110 233-355 11-121 (610)
20 KOG1113 cAMP-dependent protein 99.1 3E-10 6.5E-15 112.0 7.5 105 233-350 126-230 (368)
21 KOG0614 cGMP-dependent protein 99.0 3.1E-10 6.6E-15 116.6 6.9 117 234-363 159-275 (732)
22 KOG1113 cAMP-dependent protein 98.7 4.1E-08 8.9E-13 97.0 8.0 112 231-354 242-353 (368)
23 KOG2968 Predicted esterase of 98.4 5.4E-07 1.2E-11 97.8 6.5 112 244-365 500-613 (1158)
24 PRK11832 putative DNA-binding 97.8 0.0014 3E-08 61.7 15.9 94 244-350 14-109 (207)
25 KOG2968 Predicted esterase of 97.4 0.00085 1.8E-08 73.7 9.7 130 224-360 91-222 (1158)
26 PF04831 Popeye: Popeye protei 97.2 0.0078 1.7E-07 53.5 12.5 108 239-354 14-123 (153)
27 PF00520 Ion_trans: Ion transp 97.0 0.00069 1.5E-08 61.8 4.1 48 108-166 1-49 (200)
28 KOG3542 cAMP-regulated guanine 93.4 0.12 2.6E-06 55.7 5.4 106 232-350 284-391 (1283)
29 PF13545 HTH_Crp_2: Crp-like h 93.0 0.084 1.8E-06 41.1 2.7 42 403-444 30-72 (76)
30 PF08412 Ion_trans_N: Ion tran 92.8 0.14 3.1E-06 40.6 3.8 32 51-82 32-66 (77)
31 PF00325 Crp: Bacterial regula 91.0 0.19 4E-06 33.0 2.1 27 403-429 4-31 (32)
32 KOG3713 Voltage-gated K+ chann 79.9 10 0.00023 40.0 9.2 46 105-162 241-287 (477)
33 TIGR03037 anthran_nbaC 3-hydro 79.5 6.8 0.00015 35.5 6.8 64 264-344 43-107 (159)
34 PF07883 Cupin_2: Cupin domain 76.5 12 0.00025 28.0 6.6 44 255-302 3-47 (71)
35 KOG3542 cAMP-regulated guanine 75.0 4.3 9.2E-05 44.4 4.8 85 234-339 42-126 (1283)
36 PRK13290 ectC L-ectoine syntha 74.6 22 0.00047 30.9 8.4 68 254-338 39-106 (125)
37 PF05899 Cupin_3: Protein of u 74.5 6.5 0.00014 30.6 4.7 42 257-303 14-55 (74)
38 PRK13264 3-hydroxyanthranilate 69.9 9.8 0.00021 35.1 5.4 65 268-348 52-117 (177)
39 smart00835 Cupin_1 Cupin. This 67.2 18 0.00039 31.8 6.5 52 252-303 32-86 (146)
40 KOG1545 Voltage-gated shaker-l 64.1 16 0.00035 37.3 5.9 48 102-161 251-299 (507)
41 cd00092 HTH_CRP helix_turn_hel 63.5 17 0.00038 26.8 4.9 37 403-439 27-65 (67)
42 TIGR01610 phage_O_Nterm phage 58.0 8.1 0.00017 31.7 2.3 32 403-434 49-81 (95)
43 COG0662 {ManC} Mannose-6-phosp 53.4 38 0.00083 29.1 5.9 47 252-302 38-85 (127)
44 PRK04190 glucose-6-phosphate i 53.0 64 0.0014 30.1 7.7 52 252-303 70-131 (191)
45 TIGR03404 bicupin_oxalic bicup 52.7 42 0.00091 34.7 7.0 51 253-303 70-121 (367)
46 TIGR03404 bicupin_oxalic bicup 50.1 48 0.0011 34.2 7.0 51 252-302 247-299 (367)
47 COG1654 BirA Biotin operon rep 47.8 32 0.00069 27.4 4.1 26 403-428 21-47 (79)
48 COG1917 Uncharacterized conser 44.0 61 0.0013 27.7 5.7 48 252-303 45-93 (131)
49 smart00419 HTH_CRP helix_turn_ 43.6 21 0.00046 24.4 2.3 32 403-434 10-42 (48)
50 COG3450 Predicted enzyme of th 43.2 84 0.0018 27.0 6.2 44 255-303 50-93 (116)
51 PF12973 Cupin_7: ChrR Cupin-l 39.7 80 0.0017 25.2 5.5 63 252-337 26-88 (91)
52 PRK10141 DNA-binding transcrip 37.5 37 0.00081 29.1 3.3 43 403-445 32-78 (117)
53 PHA00738 putative HTH transcri 36.3 55 0.0012 27.7 3.9 43 403-445 28-74 (108)
54 PRK11171 hypothetical protein; 35.1 1E+02 0.0023 30.1 6.5 49 251-303 185-234 (266)
55 PF06052 3-HAO: 3-hydroxyanthr 34.0 1.4E+02 0.003 26.8 6.3 61 268-344 51-112 (151)
56 PF13730 HTH_36: Helix-turn-he 34.0 90 0.0019 22.2 4.4 26 403-428 27-53 (55)
57 COG3837 Uncharacterized conser 33.2 58 0.0012 29.5 3.8 45 255-303 47-93 (161)
58 smart00345 HTH_GNTR helix_turn 31.6 58 0.0013 23.1 3.1 28 403-430 22-50 (60)
59 PF00190 Cupin_1: Cupin; Inte 30.1 1.1E+02 0.0024 26.7 5.2 51 253-303 37-95 (144)
60 PF06249 EutQ: Ethanolamine ut 29.7 2.1E+02 0.0046 25.7 6.9 50 270-338 95-144 (152)
61 COG2140 Thermophilic glucose-6 28.9 1.8E+02 0.0039 27.6 6.5 50 253-302 83-136 (209)
62 PF00612 IQ: IQ calmodulin-bin 25.9 97 0.0021 17.7 2.7 17 373-389 3-19 (21)
63 TIGR02451 anti_sig_ChrR anti-s 25.1 2E+02 0.0044 27.2 6.3 71 251-344 128-200 (215)
64 cd07377 WHTH_GntR Winged helix 25.1 1.7E+02 0.0038 20.9 4.8 28 403-430 27-55 (66)
65 TIGR03214 ura-cupin putative a 24.2 1.6E+02 0.0034 28.8 5.6 50 249-302 178-228 (260)
66 PRK11171 hypothetical protein; 24.0 1.8E+02 0.0039 28.4 6.0 47 253-303 64-112 (266)
67 COG3718 IolB Uncharacterized e 23.3 2.6E+02 0.0055 27.2 6.4 75 252-341 31-111 (270)
68 COG1220 HslU ATP-dependent pro 23.2 3.5E+02 0.0076 28.0 7.7 64 333-400 331-415 (444)
69 PF07697 7TMR-HDED: 7TM-HD ext 22.6 61 0.0013 30.1 2.2 33 239-271 173-207 (222)
70 PF00392 GntR: Bacterial regul 20.7 2.6E+02 0.0056 20.5 5.0 28 403-430 26-54 (64)
No 1
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1e-69 Score=580.37 Aligned_cols=370 Identities=38% Similarity=0.687 Sum_probs=331.4
Q ss_pred CcccCeeecCCCchh---HHHHHHHHHHHHhhhhhhhhhhhccCCccEEEecccchhhHHHHHHHHHHHHHHHHHHhhhe
Q 037278 51 CFRVKKILDPQRPFR---NLIFFILGVIAISVDPLFFYIPVVNDDKKCLRLDKALGTTIIAIRSVLDLFYIIYIILRLRI 127 (449)
Q Consensus 51 ~~~~~~iidP~~~~~---~~~~l~~~~~~~~v~Plf~y~~~i~~~~~c~~~d~~~~~~~~v~~~i~D~~f~~DIil~F~T 127 (449)
....++||||.|+|+ |+++|++|+|++++||+|||+|.+.+...| +|..+...++++|+++|++|++||++||||
T Consensus 63 ~~~~~~Ii~P~s~~~~~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~--~d~~~~~~l~v~d~ivD~fflvdIvL~Frt 140 (727)
T KOG0498|consen 63 DKSRKWILDPYSPFYRVWNKFFLLLVIYAAFVDPLFFYFLLIDDERKC--IDGKLAAPLTVLDTIVDIFFLVDIVLNFRT 140 (727)
T ss_pred ccccceeECCCChHHHHHHHHHHHHHHHHHHhccceeeEEeccccccc--ccccccCceeeHHHHHHHHHHHHHHHhheE
Confidence 456678999999999 999999999999999999999999888889 999999999999999999999999999999
Q ss_pred eEec-cc-eeecChHHHHHhcccccchhhhhhccCcchhhhhh-hcCCCccchhHHHhHHHHHHHHHhhhHHHhhhhhhh
Q 037278 128 SSLL-AG-NLHKTVRESAIKYFMGFFTIDLVAILPLPQVVILI-IPTTRGTTFLNATNLFKYFVIFQYVPRIIRIYPFFT 204 (449)
Q Consensus 128 ~~~~-~G-~lV~d~k~Ia~~Ylk~~F~~Dlls~lP~~~i~~~~-~~~~~~~~~~~~~~llr~~~l~q~~~rl~r~~~l~~ 204 (449)
+|.+ ++ ++|.||++||+||||+||++|++|++|+||+++|+ + +..........+..+.++||++|+.|+++++.
T Consensus 141 ayv~~~s~elV~dpk~IA~rYl~twFiiDlis~lP~~~i~~~~~~---~~~~~~~~~~~l~~il~~~rL~Rl~Rv~~l~~ 217 (727)
T KOG0498|consen 141 AYVDPSSYELVDDPKKIAKRYLKTWFLIDLISTLPFDQIVVLVVI---GSTSLALESTILVGILLLQRLPRLRRVIPLFA 217 (727)
T ss_pred EEECCCCceeeeCHHHHHHHHHhhhHHHHHHHhcChhhheeeeee---cccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 44 59999999999999999999999999999999998 5 22333445558889999999999999999999
Q ss_pred hhhcccCccccchHHHHHHHHHHHHHhcc---------------------------------------------------
Q 037278 205 KVRRNSDILPGATWPKAVFNLLLYMLAGH--------------------------------------------------- 233 (449)
Q Consensus 205 ~i~~~~g~~~~~~w~~~~~~l~~yml~s~--------------------------------------------------- 233 (449)
++.+.+|+..+++|+|++++++.||+++|
T Consensus 218 r~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~tw~~~l~~~~~~~~~~~~fg~~s~~~kY~~ 297 (727)
T KOG0498|consen 218 RLEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKATWLGSLGRLLSCYNLSFTFGIYSLALKYVY 297 (727)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccccccccccccccCcccccccchhHHHHHHH
Confidence 99999999999999999999999999988
Q ss_pred --------------------------------------------------------------------------------
Q 037278 234 -------------------------------------------------------------------------------- 233 (449)
Q Consensus 234 -------------------------------------------------------------------------------- 233 (449)
T Consensus 298 aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~L 377 (727)
T KOG0498|consen 298 ALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDL 377 (727)
T ss_pred HHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHH
Confidence
Q ss_pred ----------------------------------------------CCCCCCCcHHHHHHHHhhcceEEeCCCCEEecCC
Q 037278 234 ----------------------------------------------VPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEG 267 (449)
Q Consensus 234 ----------------------------------------------v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eG 267 (449)
+|+|+++|++.+++||.++++..|+|||+|++||
T Consensus 378 RqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireG 457 (727)
T KOG0498|consen 378 RQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLCLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREG 457 (727)
T ss_pred HHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHhHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecC
Confidence 9999999999999999999999999999999999
Q ss_pred CCcCeEEEEEEeEEEEEEeeCCCeeEE-EecCCCeecHHhHHHhhccCCCCCCCCCcceEEEEecceEEEEEcHHHHHHH
Q 037278 268 DPVSEMFFITRGQLLTMKTTNRKRTGV-YLQAGDFFGEELLMWALETQSSSENLPISTRTVRTLTEVEGLALMADDLKFA 346 (449)
Q Consensus 268 d~~~~myfI~~G~v~v~~~~~~G~e~~-~l~~Gd~fGE~~l~~~l~~~~~~~~~p~s~~tv~Alt~t~l~~L~~~df~~l 346 (449)
|++++||||++|.+++..++.+|.... .+++||+|||+.+.||+. .|. ++||+|+|+|+++.|++++|+++
T Consensus 458 d~v~~myFI~rG~le~~~~~~g~~~~~~~L~~Gd~~GeEl~~~~~~-~p~-------t~TVralt~~el~~L~~~dL~~V 529 (727)
T KOG0498|consen 458 DPVTDMYFIVRGSLESITTDGGGFFVVAILGPGDFFGEELLTWCLD-LPQ-------TRTVRALTYCELFRLSADDLKEV 529 (727)
T ss_pred CccceeEEEEeeeEEEEEccCCceEEEEEecCCCccchHHHHHHhc-CCC-------CceeehhhhhhHHhccHHHHHHH
Confidence 999999999999999994443433334 999999999777778874 232 89999999999999999999999
Q ss_pred HHHcHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC----CCC--CCcchhhhhhhcHHHHHH
Q 037278 347 ASRFRQMNGEQLEHILRFYAPEWRTWAASFIQAAWRRYIERKLKESMRGEINR----LPD--SSPSLGATIYASRFAATT 420 (449)
Q Consensus 347 l~~~~~l~~~~l~~~~r~~s~~~~~~~~~~iq~a~~r~~~r~~~~~~~~~~er----~~~--~~~~l~~~~~~sr~a~~~ 420 (449)
+++||++++++++|++|+|+++|++|+++++|.+|+++++|+....+...++. .++ .+..++++.+|+++++|+
T Consensus 530 ~~~f~~~~~~~l~~~~r~~s~~~r~~aa~~iq~a~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 609 (727)
T KOG0498|consen 530 LQQFRRLGSKFLQHTFRYYSHLWRTWAACFIQAAWRRHIKRKGEEELALEEEESAIRGDDRGSKSLLRAGILASRFAANG 609 (727)
T ss_pred HHHhHHHHHHHHHhHHHHhhhhhhhhhhhhHHHHHHHHHHhhccchhhhhcchhhhccccccchhhhhcccccccccccC
Confidence 99999999999999999999999999999999999999999876655553222 222 668899999999999999
Q ss_pred HHHHHHccccccC
Q 037278 421 LRATRRIGTRAFT 433 (449)
Q Consensus 421 ~~~~~~~~~~~~~ 433 (449)
.+.++.+.++...
T Consensus 610 ~~~~~~~~~~~~~ 622 (727)
T KOG0498|consen 610 RPPLHTAASRGSS 622 (727)
T ss_pred CCccccccccCcc
Confidence 9998877544333
No 2
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=100.00 E-value=3e-36 Score=337.30 Aligned_cols=313 Identities=19% Similarity=0.246 Sum_probs=222.8
Q ss_pred cchhhhhhhhhccC--CCCCC--CCCCcccCeeecCCCchh---HHHHHHHHHHHHhhhhhhhhhhhccCCccEEEeccc
Q 037278 29 FALDYLENIRSRRK--SPKTC--GGFCFRVKKILDPQRPFR---NLIFFILGVIAISVDPLFFYIPVVNDDKKCLRLDKA 101 (449)
Q Consensus 29 ~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~iidP~~~~~---~~~~l~~~~~~~~v~Plf~y~~~i~~~~~c~~~d~~ 101 (449)
.++.+++++++.+. +|+.. +.....+++||+|.++++ +.++++++++++++.|+.+.+ . +..
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~P~~~~~~~Wd~~~~~~~~y~~~~~p~~~~F--~---------~~~ 89 (823)
T PLN03192 21 SGSLSLRNLSKVILPPLGVPSYNQNHIGSDGWIISPMDSRYRWWETLMVVLVAYSAWVYPFEVAF--L---------NAS 89 (823)
T ss_pred CcceehhhcchhhccccCCCccccCccccCCeEECCCCcHHHHHHHHHHHHHHHHHHHHHHHHHe--e---------CCC
Confidence 45677888888775 56542 444467789999999999 444556666888889976422 1 111
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhheeEec--cceeecChHHHHHhcccccchhhhhhccCcchhhhhhhcCCCccchh-
Q 037278 102 LGTTIIAIRSVLDLFYIIYIILRLRISSLL--AGNLHKTVRESAIKYFMGFFTIDLVAILPLPQVVILIIPTTRGTTFL- 178 (449)
Q Consensus 102 ~~~~~~v~~~i~D~~f~~DIil~F~T~~~~--~G~lV~d~k~Ia~~Ylk~~F~~Dlls~lP~~~i~~~~~~~~~~~~~~- 178 (449)
....+.+++.++|++|++||+++|+|+|++ +|++|.||++|++||+|+||++|++|++|++.+...+..........
T Consensus 90 ~~~~~~~~d~i~~~~F~iDi~l~f~~ay~d~~~~~lV~d~~~I~~~Yl~~~f~~Dlis~lP~~~i~~~~~~~~~~~~~~~ 169 (823)
T PLN03192 90 PKRGLEIADNVVDLFFAVDIVLTFFVAYIDPRTQLLVRDRKKIAVRYLSTWFLMDVASTIPFQALAYLITGTVKLNLSYS 169 (823)
T ss_pred CCCCeeeHHHHHHHHHHHHHHhheeEEEEeCCCcEEEeCHHHHHHHHHHHhHHHHHHHHhHHHHHHHHhcCCccchHHHH
Confidence 112466789999999999999999999998 67899999999999999999999999999987654432222211222
Q ss_pred --HHHhHHHHHHHHHhhhHH-------------HhhhhhhhhhhcccCcc----------ccchHHHH------------
Q 037278 179 --NATNLFKYFVIFQYVPRI-------------IRIYPFFTKVRRNSDIL----------PGATWPKA------------ 221 (449)
Q Consensus 179 --~~~~llr~~~l~q~~~rl-------------~r~~~l~~~i~~~~g~~----------~~~~w~~~------------ 221 (449)
...+++|+.++.+++.++ ++++.....+.+..|++ .+..|++.
T Consensus 170 ~l~llrl~Rl~ri~~~~~~le~~~~~~~~~~~~~kli~~~l~~~H~~aC~~y~i~~~~~~~~~~Wi~~~~~~~~~~s~~~ 249 (823)
T PLN03192 170 LLGLLRFWRLRRVKQLFTRLEKDIRFSYFWIRCARLLSVTLFLVHCAGCLYYLIADRYPHQGKTWIGAVIPNFRETSLWI 249 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchHHHhhhccccCcHHH
Confidence 333344443333333222 11111111111111110 11233332
Q ss_pred -----HHHHH-----------------------HHHHhcc----------------------------------------
Q 037278 222 -----VFNLL-----------------------LYMLAGH---------------------------------------- 233 (449)
Q Consensus 222 -----~~~l~-----------------------~yml~s~---------------------------------------- 233 (449)
.|..+ ++|+.+.
T Consensus 250 ~Yi~slYwai~TmtTVGYGDi~p~t~~E~i~~i~~ml~g~~~~a~~ig~i~~li~~~~~~~~~f~~~~~~~~~ym~~~~l 329 (823)
T PLN03192 250 RYISAIYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRL 329 (823)
T ss_pred HHHHHHHHHHHHHhhccCCCcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 00000 0011000
Q ss_pred -------------------------------------------------CCCCCCCcHHHHHHHHhhcceEEeCCCCEEe
Q 037278 234 -------------------------------------------------VPMFSDWNEQILSEMCDSLKQVLYTAESYIQ 264 (449)
Q Consensus 234 -------------------------------------------------v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~ 264 (449)
+++|++++++++.+|+..++++.|+|||.|+
T Consensus 330 p~~lq~ri~~y~~~~~~~~~~~~~~~l~~Lp~~Lr~~i~~~l~~~~l~~~~lF~~~s~~~l~~L~~~~~~~~~~pge~I~ 409 (823)
T PLN03192 330 PPRLKDQILAYMCLRFKAESLNQQQLIDQLPKSICKSICQHLFLPVVEKVYLFKGVSREILLLLVTKMKAEYIPPREDVI 409 (823)
T ss_pred CHHHHHHHHHHHHHHHhhccccHHHHHHHcCHHHHHHHHHHHHHHHHhhCcchhcCCHHHHHHHHHhhheeeeCCCCEEE
Confidence 8999999999999999999999999999999
Q ss_pred cCCCCcCeEEEEEEeEEEEEEeeCCCeeEE--EecCCCeecHHhHHHhhccCCCCCCCCCcceEEEEecceEEEEEcHHH
Q 037278 265 QEGDPVSEMFFITRGQLLTMKTTNRKRTGV--YLQAGDFFGEELLMWALETQSSSENLPISTRTVRTLTEVEGLALMADD 342 (449)
Q Consensus 265 ~eGd~~~~myfI~~G~v~v~~~~~~G~e~~--~l~~Gd~fGE~~l~~~l~~~~~~~~~p~s~~tv~Alt~t~l~~L~~~d 342 (449)
.|||+++++|||.+|.|+++ ..++|++.+ .+++||+|||.++ +.+.|+ +++++|.++|+++.|++++
T Consensus 410 ~qge~~~~lY~I~~G~V~i~-~~~~~~e~~l~~l~~Gd~FGE~~~---l~~~p~-------~~t~ra~~~s~ll~l~~~~ 478 (823)
T PLN03192 410 MQNEAPDDVYIVVSGEVEII-DSEGEKERVVGTLGCGDIFGEVGA---LCCRPQ-------SFTFRTKTLSQLLRLKTST 478 (823)
T ss_pred ECCCCCceEEEEEecEEEEE-EecCCcceeeEEccCCCEecchHH---hcCCCC-------CCeEEEcccEEEEEEEHHH
Confidence 99999999999999999998 456666665 8999999999999 566766 8999999999999999999
Q ss_pred HHHHHHHcHHHHHHHHHHHHH
Q 037278 343 LKFAASRFRQMNGEQLEHILR 363 (449)
Q Consensus 343 f~~ll~~~~~l~~~~l~~~~r 363 (449)
|.++++++|......+++..+
T Consensus 479 f~~ll~~~p~d~~~i~~~~l~ 499 (823)
T PLN03192 479 LIEAMQTRQEDNVVILKNFLQ 499 (823)
T ss_pred HHHHHHHhhHHHHHHHHHHHH
Confidence 999999999877766666554
No 3
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=6.8e-33 Score=278.93 Aligned_cols=250 Identities=23% Similarity=0.391 Sum_probs=191.3
Q ss_pred ecccchhhHHHHHHHHHHHHHHHHHHhhheeEeccceeecChHHHHHhcccc-cchhhhhhccCcchhhhhhhcCCCccc
Q 037278 98 LDKALGTTIIAIRSVLDLFYIIYIILRLRISSLLAGNLHKTVRESAIKYFMG-FFTIDLVAILPLPQVVILIIPTTRGTT 176 (449)
Q Consensus 98 ~d~~~~~~~~v~~~i~D~~f~~DIil~F~T~~~~~G~lV~d~k~Ia~~Ylk~-~F~~Dlls~lP~~~i~~~~~~~~~~~~ 176 (449)
+.......|.++|+++|++|++||++++||+|+++|++|.|-++.++||.+| .|.+|++|++|+|.++++..+. .
T Consensus 23 i~~~y~~~wl~ld~~~D~vyllDi~v~~R~gyleqGllV~~~~Kl~~hY~~s~~f~lD~l~liP~D~l~~~~~~~----~ 98 (536)
T KOG0500|consen 23 IQSSYLENWLPLDYLFDFVYLLDIIVRSRTGYLEQGLLVKDTSKLRKHYVHSTQFKLDVLSLIPLDLLLFKDGSA----S 98 (536)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhcCeeehhhHHHHHHHHHhhhhhhhhhhhcchhHHhhcCCcc----h
Confidence 3444556799999999999999999999999999999999999999999988 9999999999999988765221 1
Q ss_pred hhHHHhHHHHHHHHHhh---------hHHHhhh--------------hhhhhhhcccCccccchHH----------HH--
Q 037278 177 FLNATNLFKYFVIFQYV---------PRIIRIY--------------PFFTKVRRNSDILPGATWP----------KA-- 221 (449)
Q Consensus 177 ~~~~~~llr~~~l~q~~---------~rl~r~~--------------~l~~~i~~~~g~~~~~~w~----------~~-- 221 (449)
....++++|+.|++.++ |.++|+. |+|..+++..|+...+ |. .|
T Consensus 99 ~~r~nRllk~yRl~~F~~rTetrT~~Pn~fri~~lv~~~~ilfHWNaClYf~iS~~~g~~~d~-wvY~~i~d~~~~~c~~ 177 (536)
T KOG0500|consen 99 LERLNRLLKIYRLFEFFDRTETRTTYPNAFRISKLVHYCLILFHWNACLYFLISKAIGFTTDD-WVYPKINDPEFATCDA 177 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhHHHHhhhHhcCccccc-cccCCccCccccccch
Confidence 23345555555554442 4444442 4555555555543321 21 00
Q ss_pred -------HHHHHH----------------------------------------------------------------HHH
Q 037278 222 -------VFNLLL----------------------------------------------------------------YML 230 (449)
Q Consensus 222 -------~~~l~~----------------------------------------------------------------yml 230 (449)
++++.| ||-
T Consensus 178 ~n~~ReY~~S~YWStLTlTTiGe~P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVtnmna~r~EFq~~mDGiK~YM~ 257 (536)
T KOG0500|consen 178 GNLTREYLYSLYWSTLTLTTIGEQPPPVTSSEYAFVIVDTLIGVLIFATIVGNVGSMVTNMNAARTEFQAKMDGIKQYMR 257 (536)
T ss_pred hHHHHHHHHHHHHHhhhhhhccCCCCCCcCchhhHHHHHHHHHHHHHhhhhccHhHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 000000 110
Q ss_pred hcc---------------------------------------------------CCCCCCCcHHHHHHHHhhcceEEeCC
Q 037278 231 AGH---------------------------------------------------VPMFSDWNEQILSEMCDSLKQVLYTA 259 (449)
Q Consensus 231 ~s~---------------------------------------------------v~lF~~l~~~~l~~L~~~l~~~~~~~ 259 (449)
... |++|+.+++.++.+++.+++++.|.|
T Consensus 258 ~RkV~~~lq~rVikwfdYlwa~~~~~DEeevl~~LP~kL~aeIA~nvh~dTLkkV~iF~~ce~~lL~elVLklk~qvfSP 337 (536)
T KOG0500|consen 258 YRKVPKALQTRVIKWFDYLWAHKKIVDEEEVLKLLPDKLKAEIAINVHLDTLKKVRIFQDCEAGLLVELVLKLKPQVFSP 337 (536)
T ss_pred HhcccHHHHHHHHHHHHHHHhccccccHHHHHHhCCHHHHhHhHHHHHHHHHHhhhHHHhcchhHHHHHHHHhcceeeCC
Confidence 000 99999999999999999999999999
Q ss_pred CCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEE-EecCCCeecHHhHHHhhccCCCCCCCCCcceEEEEecceEEEEE
Q 037278 260 ESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGV-YLQAGDFFGEELLMWALETQSSSENLPISTRTVRTLTEVEGLAL 338 (449)
Q Consensus 260 ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~-~l~~Gd~fGE~~l~~~l~~~~~~~~~p~s~~tv~Alt~t~l~~L 338 (449)
||+|+++||.+.+||+|.+|.+++. ++||.++. .+++|++|||+++.| +.++ .++.+++++++++.+++++++
T Consensus 338 gDyICrKGdvgkEMyIVk~G~L~Vv--~dDg~t~~~~L~~G~~FGEisIln-i~g~---~~gNRRtanvrSvGYSDlfvL 411 (536)
T KOG0500|consen 338 GDYICRKGDVGKEMYIVKEGKLAVV--ADDGVTVFVTLKAGSVFGEISILN-IKGN---KNGNRRTANVRSVGYSDLFVL 411 (536)
T ss_pred CCeEEecCcccceEEEEEccEEEEE--ecCCcEEEEEecCCceeeeeEEEE-EcCc---ccCCcceeeeeeeccceeeEe
Confidence 9999999999999999999999997 66776666 999999999999842 2322 156677999999999999999
Q ss_pred cHHHHHHHHHHcHHHHHHHH
Q 037278 339 MADDLKFAASRFRQMNGEQL 358 (449)
Q Consensus 339 ~~~df~~ll~~~~~l~~~~l 358 (449)
+++|+.+++++||.-....+
T Consensus 412 skdDl~~aL~eYP~a~~~L~ 431 (536)
T KOG0500|consen 412 SKDDLWEALSEYPDARKRLE 431 (536)
T ss_pred eHHHHHHHHHhCCHHHHHHH
Confidence 99999999999998554443
No 4
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.97 E-value=2.2e-30 Score=264.28 Aligned_cols=280 Identities=21% Similarity=0.360 Sum_probs=200.5
Q ss_pred cCeeecCCC-chh--HHHHHHHHH-HHHhhhhhhhhhhhccCCccEEEecccchhhHHHHHHHHHHHHHHHHH-Hhhhee
Q 037278 54 VKKILDPQR-PFR--NLIFFILGV-IAISVDPLFFYIPVVNDDKKCLRLDKALGTTIIAIRSVLDLFYIIYII-LRLRIS 128 (449)
Q Consensus 54 ~~~iidP~~-~~~--~~~~l~~~~-~~~~v~Plf~y~~~i~~~~~c~~~d~~~~~~~~v~~~i~D~~f~~DIi-l~F~T~ 128 (449)
-+.-|||.+ ++| |-.+|.+|. +..|++||=.-+|+-.. +....|.+.|++||++|++||+ ++=|.-
T Consensus 216 ~~~sidp~~~r~Y~~WL~lVtlaf~~N~w~IPlR~sfPyQT~---------dN~~~Wli~Dy~cDiIYllDmlf~q~Rl~ 286 (815)
T KOG0499|consen 216 LPNSIDPYTDRLYLLWLLLVTLAFNWNCWFIPLRLSFPYQTA---------DNIHYWLIADYICDIIYLLDMLFIQPRLQ 286 (815)
T ss_pred CCcccCcccchHHHHHHHHHHHHHhhceeEEeeeccCCcccc---------ccchhhhhHHHHhhHHHHHHHhhhhhhhe
Confidence 367899999 777 444444443 66788887655554322 2235789999999999999995 677778
Q ss_pred EeccceeecChHHHHHhcccc-cchhhhhhccCcchhhhhhhcCCCccchhHHHhHHHHHHHHH----------------
Q 037278 129 SLLAGNLHKTVRESAIKYFMG-FFTIDLVAILPLPQVVILIIPTTRGTTFLNATNLFKYFVIFQ---------------- 191 (449)
Q Consensus 129 ~~~~G~lV~d~k~Ia~~Ylk~-~F~~Dlls~lP~~~i~~~~~~~~~~~~~~~~~~llr~~~l~q---------------- 191 (449)
|.-.|..|.|.+...+||+++ .|-+|++|+||+|.++..+ +....++.++.|+..-++.
T Consensus 287 fvrgG~~ik~kndtrk~Yl~sr~FklDllsiLPldllY~~~----G~~p~wR~~R~lK~~sF~e~~~~Le~i~s~~y~~R 362 (815)
T KOG0499|consen 287 FVRGGDIIKDKNDTRKHYLTSRKFKLDLLSILPLDLLYLFF----GFNPMWRANRMLKYTSFFEFNHHLESIMSKAYIYR 362 (815)
T ss_pred eeeCceEEEechHHHHHHHHhhhhhhhHHhhhhHHHHHHHh----ccchhhhhhhHHHHHHHHHHHHHHHHHhcchhhhh
Confidence 888999999999999999998 9999999999999887765 1111234444444333222
Q ss_pred ------hhhHHHhh-hhhhhhhhcccCc--------------cccchHHHH-----------------------------
Q 037278 192 ------YVPRIIRI-YPFFTKVRRNSDI--------------LPGATWPKA----------------------------- 221 (449)
Q Consensus 192 ------~~~rl~r~-~~l~~~i~~~~g~--------------~~~~~w~~~----------------------------- 221 (449)
|+.-++++ .|+|...+...|+ +...+|+..
T Consensus 363 V~rT~~YmlyilHinacvYY~~SayqglG~~rWVydg~Gn~YiRCyyfa~kt~~tiG~~P~P~~~~E~Vf~~~~w~mGVF 442 (815)
T KOG0499|consen 363 VIRTTGYLLYILHINACVYYWASAYQGLGTTRWVYDGEGNEYIRCYYFAVKTLITIGGLPEPQTLFEIVFQLLNWFMGVF 442 (815)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHhhcccccceeEEcCCCCceeeehhhHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHH
Confidence 22222222 1222222222221 111122111
Q ss_pred HHHHHH--------------------------HH----------------------------------------------
Q 037278 222 VFNLLL--------------------------YM---------------------------------------------- 229 (449)
Q Consensus 222 ~~~l~~--------------------------ym---------------------------------------------- 229 (449)
++.+++ ||
T Consensus 443 vFslliGQmRDvi~aAt~nq~~fr~~mD~tl~ym~~~~i~kevqnRVr~WyeyTW~sQr~LDEs~ll~~LP~klq~dlAi 522 (815)
T KOG0499|consen 443 VFSLLIGQMRDVIGAATANQNYFRACMDDTLAYMNNYSIPKEVQNRVRTWYEYTWDSQRMLDESDLLKTLPTKLQLDLAI 522 (815)
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhhhccccHHHHHHhcchhheeeeeE
Confidence 011100 00
Q ss_pred -----HhccCCCCCCCcHHHHHHHHhhcceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEE-EecCCCeec
Q 037278 230 -----LAGHVPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGV-YLQAGDFFG 303 (449)
Q Consensus 230 -----l~s~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~-~l~~Gd~fG 303 (449)
..|+|.+|++|+.+.+..++.+++...|-|||+|++.||.+.+||+|..|.|++. -.++|+.+. .|++|.+||
T Consensus 523 ~V~y~~lSKVqLFq~Cdr~mirDmllrLRsV~yLPgDfVCkKGeiGkEMYIIk~GqvQVl-GGp~~~~Vl~tL~~GsVFG 601 (815)
T KOG0499|consen 523 DVNYSILSKVQLFQGCDRQMIRDMLLRLRSVLYLPGDFVCKKGEIGKEMYIIKHGQVQVL-GGPDGTKVLVTLKAGSVFG 601 (815)
T ss_pred EeehhhhhHHHHhhhhHHHHHHHHHHHhhceeecCCceeeecccccceeEEeecceEEEe-cCCCCCEEEEEecccceee
Confidence 0011899999999999999999999999999999999999999999999999998 677787777 999999999
Q ss_pred HHhHHHhhccCCCCCCCCCcceEEEEecceEEEEEcHHHHHHHHHHcHHHH
Q 037278 304 EELLMWALETQSSSENLPISTRTVRTLTEVEGLALMADDLKFAASRFRQMN 354 (449)
Q Consensus 304 E~~l~~~l~~~~~~~~~p~s~~tv~Alt~t~l~~L~~~df~~ll~~~~~l~ 354 (449)
|++++ +++++.+ ++++|+|.+.|.++.++++|+.+++..||.-+
T Consensus 602 EISLL-aigG~nR------RTAnV~a~Gf~nLfvL~KkdLneil~~YP~sq 645 (815)
T KOG0499|consen 602 EISLL-AIGGGNR------RTANVVAHGFANLFVLDKKDLNEILVHYPDSQ 645 (815)
T ss_pred eeeee-eecCCCc------cchhhhhcccceeeEecHhHHHHHHHhCccHH
Confidence 99994 4444443 59999999999999999999999999997643
No 5
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=99.97 E-value=2.1e-30 Score=263.55 Aligned_cols=115 Identities=22% Similarity=0.346 Sum_probs=98.2
Q ss_pred CCCCCCCcHHHHHHHHhhcceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEE-EecCCCeecHHhHHHhhc
Q 037278 234 VPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGV-YLQAGDFFGEELLMWALE 312 (449)
Q Consensus 234 v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~-~l~~Gd~fGE~~l~~~l~ 312 (449)
.|-|.--++..+.+|...++..+..||+.|++.||.+|.++||++|.+++.+ + .|++ +++.||.||+. ||- +
T Consensus 553 HpaFRLASDGCLRaLAm~f~~~H~APGDLlYHtGESvDaLcFvVsGSLEVIQ-D---DEVVAILGKGDVFGD~--FWK-~ 625 (971)
T KOG0501|consen 553 HPAFRLASDGCLRALAMEFQTNHCAPGDLLYHTGESVDALCFVVSGSLEVIQ-D---DEVVAILGKGDVFGDE--FWK-E 625 (971)
T ss_pred CcceeeccchhHHHHHHHHHhccCCCcceeeecCCccceEEEEEecceEEee-c---CcEEEEeecCccchhH--Hhh-h
Confidence 7889889999999999999999999999999999999999999999999983 2 2666 99999999987 332 1
Q ss_pred cCCCCCCCCCcceEEEEecceEEEEEcHHHHHHHHHHcHHHHHHHHHH
Q 037278 313 TQSSSENLPISTRTVRTLTEVEGLALMADDLKFAASRFRQMNGEQLEH 360 (449)
Q Consensus 313 ~~~~~~~~p~s~~tv~Alt~t~l~~L~~~df~~ll~~~~~l~~~~l~~ 360 (449)
. .+..+.++|+|+|+|++..|.++.+.++++-|..+.+..-++
T Consensus 626 -~----t~~qs~ANVRALTYcDLH~IKrd~Ll~VLdFYtAFanSFaRN 668 (971)
T KOG0501|consen 626 -N----TLGQSAANVRALTYCDLHMIKRDKLLKVLDFYTAFANSFARN 668 (971)
T ss_pred -h----hhhhhhhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHhhhc
Confidence 1 233458999999999999999999999999887776654444
No 6
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=99.85 E-value=7.1e-20 Score=175.81 Aligned_cols=196 Identities=14% Similarity=0.151 Sum_probs=156.6
Q ss_pred ccCCCCCCCcHHHHHHHHhhcceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEE--EecCCCeecHHhHHH
Q 037278 232 GHVPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGV--YLQAGDFFGEELLMW 309 (449)
Q Consensus 232 s~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~--~l~~Gd~fGE~~l~~ 309 (449)
..+++|..+++++++.+....+.+.|++|+.|+++||+++++|+|.+|.++++... +|++.+ .+.+|++||+.++
T Consensus 10 ~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~-~~~~~~i~~~~~g~~~g~~~~-- 86 (236)
T PRK09392 10 RNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSASS-QDRETTLAILRPVSTFILAAV-- 86 (236)
T ss_pred hcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEcC-CCceEEEEEeCCCchhhhHHH--
Confidence 45899999999999999999999999999999999999999999999999999654 555555 9999999999987
Q ss_pred hhccCCCCCCCCCcceEEEEecceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHH
Q 037278 310 ALETQSSSENLPISTRTVRTLTEVEGLALMADDLKFAASRFRQMNGEQLEHILRFYAPEWRTWAASFIQAAWRRYIERKL 389 (449)
Q Consensus 310 ~l~~~~~~~~~p~s~~tv~Alt~t~l~~L~~~df~~ll~~~~~l~~~~l~~~~r~~s~~~~~~~~~~iq~a~~r~~~r~~ 389 (449)
+++.++ .++++|+++|+++.+++++|.+++.++|.+....++...+.+.... .............|..
T Consensus 87 -~~~~~~-------~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~Rla 154 (236)
T PRK09392 87 -VLDAPY-------LMSARTLTRSRVLMIPAELVREAMSEDPGFMRAVVFELAGCYRGLV----KSLKNQKLRSSAERLA 154 (236)
T ss_pred -hCCCCC-------ceEEEEcCceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH----HHHHHhhcCCHHHHHH
Confidence 676665 8999999999999999999999999999988776665544332223 3333333333445555
Q ss_pred HHHHhhhcCCCCC-------CCcchhhhhhhcHHH-HHHHHHHHHccccccCCccccccCcc
Q 037278 390 KESMRGEINRLPD-------SSPSLGATIYASRFA-ATTLRATRRIGTRAFTGESSCHDNSE 443 (449)
Q Consensus 390 ~~~~~~~~er~~~-------~~~~l~~~~~~sr~a-~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (449)
..++..++..... ++.++|..+|.+|.+ +++|+.|+++|- ...+..|+..|.+
T Consensus 155 ~~Ll~~~~~~~~~~~~~i~~t~~~iA~~lG~tretvsR~l~~L~~~gl-~~~~~~i~I~d~~ 215 (236)
T PRK09392 155 NYLLKQSLRQGGADVVTLPYEKRVLASYLGMTPENLSRAFAALASHGV-HVDGSAVTITDPA 215 (236)
T ss_pred HHHHHhccccCCCcEEEeeCCHHHHHHHhCCChhHHHHHHHHHHhCCe-EeeCCEEEEcCHH
Confidence 5555444322111 678999999999999 999999999996 4667788888765
No 7
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=99.83 E-value=4.9e-19 Score=166.70 Aligned_cols=192 Identities=16% Similarity=0.195 Sum_probs=148.0
Q ss_pred CCCcHHHHHHHHhhcceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEE--EecCCCeecHHhHHHhhccCC
Q 037278 238 SDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGV--YLQAGDFFGEELLMWALETQS 315 (449)
Q Consensus 238 ~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~--~l~~Gd~fGE~~l~~~l~~~~ 315 (449)
+.+++++++.+...++.+.|++|++|+++||+++.+|+|.+|.++++..+.+|++.+ .+.+||+||+..+ +.+.+
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~---~~~~~ 82 (211)
T PRK11753 6 KPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGL---FEEGQ 82 (211)
T ss_pred CCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehhh---ccCCC
Confidence 578999999999999999999999999999999999999999999998788898877 9999999999988 45332
Q ss_pred CCCCCCCcceEEEEecceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 037278 316 SSENLPISTRTVRTLTEVEGLALMADDLKFAASRFRQMNGEQLEHILRFYAPEWRTWAASFIQAAWRRYIERKLKESM-- 393 (449)
Q Consensus 316 ~~~~~p~s~~tv~Alt~t~l~~L~~~df~~ll~~~~~l~~~~l~~~~r~~s~~~~~~~~~~iq~a~~r~~~r~~~~~~-- 393 (449)
. ++.+++|.++|+++.+++++|.++++++|.+....++...+.. .................|....+.
T Consensus 83 ~------~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~l----~~~~~~~~~~~~~~~~~Rl~~~L~~l 152 (211)
T PRK11753 83 E------RSAWVRAKTACEVAEISYKKFRQLIQVNPDILMALSAQMARRL----QNTSRKVGDLAFLDVTGRIAQTLLDL 152 (211)
T ss_pred C------ceEEEEEcCcEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHH----HHHHHHHHHHHhcChhhHHHHHHHHH
Confidence 1 3789999999999999999999999999998766555444322 222222222222233344443332
Q ss_pred -hhhcCC-CCC------CCcchhhhhhhcHHH-HHHHHHHHHccccccCCccccccCc
Q 037278 394 -RGEINR-LPD------SSPSLGATIYASRFA-ATTLRATRRIGTRAFTGESSCHDNS 442 (449)
Q Consensus 394 -~~~~er-~~~------~~~~l~~~~~~sr~a-~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (449)
...++. .++ ++.+||..+|++|.+ +++|+.|++.|-.+..|..|-..|+
T Consensus 153 ~~~~~~~~~~~~~~~~~t~~~lA~~lG~tr~tvsR~l~~l~~~gii~~~~~~i~i~~~ 210 (211)
T PRK11753 153 AKQPDAMTHPDGMQIKITRQEIGRIVGCSREMVGRVLKMLEDQGLISAHGKTIVVYGT 210 (211)
T ss_pred HHhcCCcCCCCceecCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecCCEEEEecC
Confidence 222211 111 889999999999999 9999999999987777777766554
No 8
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=99.82 E-value=3.4e-19 Score=170.46 Aligned_cols=188 Identities=16% Similarity=0.115 Sum_probs=146.3
Q ss_pred HHHHHHHHhhcceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEE--EecCCCeecHHhHHHhhccCCCCCC
Q 037278 242 EQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGV--YLQAGDFFGEELLMWALETQSSSEN 319 (449)
Q Consensus 242 ~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~--~l~~Gd~fGE~~l~~~l~~~~~~~~ 319 (449)
+-+..+|.+..+.+.|++|++|+++||+++++|+|.+|.++++..+++|++.+ ++.||++||+.++ +.+.++
T Consensus 21 ~~~~~~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~~~~---~~~~~~--- 94 (226)
T PRK10402 21 DCFSFDVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGEIEL---IDKDHE--- 94 (226)
T ss_pred hcCCHHHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEeehh---hcCCCC---
Confidence 33445677888999999999999999999999999999999998889999887 8999999999887 666655
Q ss_pred CCCcceEEEEecceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-C
Q 037278 320 LPISTRTVRTLTEVEGLALMADDLKFAASRFRQMNGEQLEHILRFYAPEWRTWAASFIQAAWRRYIERKLKESMRGEI-N 398 (449)
Q Consensus 320 ~p~s~~tv~Alt~t~l~~L~~~df~~ll~~~~~l~~~~l~~~~r~~s~~~~~~~~~~iq~a~~r~~~r~~~~~~~~~~-e 398 (449)
+.+++|+++|+++.+++++|.+++.++|.+....++...+ ..........+........|....+...++ +
T Consensus 95 ----~~~~~A~~~~~i~~i~~~~~~~ll~~~p~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~Rla~~L~~~~~~~ 166 (226)
T PRK10402 95 ----TKAVQAIEECWCLALPMKDCRPLLLNDALFLRKLCKFLSH----KNYRNIVSLTQNQSFPLENRLAAFILLTQEGD 166 (226)
T ss_pred ----CccEEEeccEEEEEEEHHHHHHHHhcCHHHHHHHHHHHHH----HHHHHHHHHHHhccChHHHHHHHHHHhcccCC
Confidence 8999999999999999999999999999877665554433 212222222222112345566655554322 2
Q ss_pred CCCCCCcchhhhhhhcHHH-HHHHHHHHHccccccCCccccccCcc
Q 037278 399 RLPDSSPSLGATIYASRFA-ATTLRATRRIGTRAFTGESSCHDNSE 443 (449)
Q Consensus 399 r~~~~~~~l~~~~~~sr~a-~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (449)
..+.++.+||+.+|++|.+ +|+|+.|+++|-....|.++..+|.+
T Consensus 167 ~~~~t~~~lA~~lG~sretvsR~L~~L~~~G~I~~~~~~i~I~d~~ 212 (226)
T PRK10402 167 LYHEKHTQAAEYLGVSYRHLLYVLAQFIQDGYLKKSKRGYLIKNRK 212 (226)
T ss_pred cccchHHHHHHHHCCcHHHHHHHHHHHHHCCCEEeeCCEEEEeCHH
Confidence 2233889999999999999 99999999999877788889888754
No 9
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=99.81 E-value=2.6e-18 Score=164.76 Aligned_cols=194 Identities=12% Similarity=0.123 Sum_probs=147.4
Q ss_pred CCCCCCcHHHHHHHHhhcc-eEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEE--EecCCCeecHHhHHHhh
Q 037278 235 PMFSDWNEQILSEMCDSLK-QVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGV--YLQAGDFFGEELLMWAL 311 (449)
Q Consensus 235 ~lF~~l~~~~l~~L~~~l~-~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~--~l~~Gd~fGE~~l~~~l 311 (449)
+.|..+++++++.|....+ ...|++|+.|+++||+++++|+|.+|.+++++.+++|++.+ ++.|||+||+..+ +
T Consensus 19 ~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~~~~---~ 95 (235)
T PRK11161 19 CIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGFDAI---G 95 (235)
T ss_pred ccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEECCCCCEEEEEeccCCceeccccc---c
Confidence 3444699999999998886 46899999999999999999999999999998888999977 8899999998655 3
Q ss_pred ccCCCCCCCCCcceEEEEecceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHH
Q 037278 312 ETQSSSENLPISTRTVRTLTEVEGLALMADDLKFAASRFRQMNGEQLEHILRFYAPEWRTWAASFIQAAWRRYIERKLKE 391 (449)
Q Consensus 312 ~~~~~~~~~p~s~~tv~Alt~t~l~~L~~~df~~ll~~~~~l~~~~l~~~~r~~s~~~~~~~~~~iq~a~~r~~~r~~~~ 391 (449)
. .+. +.+++|+++++++.+|+++|.+++.++|.+....++...+ ...................|....
T Consensus 96 ~-~~~-------~~~~~a~~~~~i~~ip~~~f~~l~~~~p~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~Rla~~ 163 (235)
T PRK11161 96 S-GQH-------PSFAQALETSMVCEIPFETLDDLSGKMPKLRQQIMRLMSG----EIKGDQEMILLLSKKNAEERLAAF 163 (235)
T ss_pred C-CCC-------cceEEEeccEEEEEEEHHHHHHHHHHChHHHHHHHHHHHH----HHHHHHHHHHHHhCCCHHHHHHHH
Confidence 3 222 5689999999999999999999999999987665555433 222222222112222223343333
Q ss_pred HHhhh---cCCC-------CC-CCcchhhhhhhcHHH-HHHHHHHHHccccccCCccccccCcc
Q 037278 392 SMRGE---INRL-------PD-SSPSLGATIYASRFA-ATTLRATRRIGTRAFTGESSCHDNSE 443 (449)
Q Consensus 392 ~~~~~---~er~-------~~-~~~~l~~~~~~sr~a-~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (449)
+..-+ +... .. |+.+||..+|++|.+ +|+|+.|+++|-.+..+.++..+|.+
T Consensus 164 L~~l~~~~~~~~~~~~~~~~~lt~~~iA~~lG~sr~tvsR~l~~l~~~g~I~~~~~~i~i~d~~ 227 (235)
T PRK11161 164 IYNLSRRFAQRGFSPREFRLTMTRGDIGNYLGLTVETISRLLGRFQKSGMLAVKGKYITIENND 227 (235)
T ss_pred HHHHHHHHhhcCCCCceeEccccHHHHHHHhCCcHHHHHHHHHHHHHCCCEEecCCEEEEcCHH
Confidence 33322 1111 11 889999999999999 99999999999988888899998764
No 10
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=99.77 E-value=1e-17 Score=155.36 Aligned_cols=172 Identities=16% Similarity=0.083 Sum_probs=134.0
Q ss_pred CCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEE--EecCCCeecHHhHHHhhccCCCCCCCCCcceEEEEecceEEEE
Q 037278 260 ESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGV--YLQAGDFFGEELLMWALETQSSSENLPISTRTVRTLTEVEGLA 337 (449)
Q Consensus 260 ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~--~l~~Gd~fGE~~l~~~l~~~~~~~~~p~s~~tv~Alt~t~l~~ 337 (449)
|+.|+++||+++++|+|.+|.|+++..+++|++.+ ++.||++||+.++ +.+.+. ++..+++|+++|+++.
T Consensus 1 g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G~~~~---~~~~~~-----~~~~~~~A~~~~~v~~ 72 (193)
T TIGR03697 1 GKTIFFPGDPAEKVYFLRRGAVKLSRVYESGEEITVALLRENSVFGVLSL---ITGHRS-----DRFYHAVAFTRVELLA 72 (193)
T ss_pred CCceecCCCCCCcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEeeeeee---ccCCCC-----ccceEEEEecceEEEE
Confidence 78999999999999999999999998889999987 9999999999877 554432 1257899999999999
Q ss_pred EcHHHHHHHHHHcHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cCCCC--------CCCcc
Q 037278 338 LMADDLKFAASRFRQMNGEQLEHILRFYAPEWRTWAASFIQAAWRRYIERKLKESMRGE---INRLP--------DSSPS 406 (449)
Q Consensus 338 L~~~df~~ll~~~~~l~~~~l~~~~r~~s~~~~~~~~~~iq~a~~r~~~r~~~~~~~~~---~er~~--------~~~~~ 406 (449)
+|+++|.+++.++|.+....++...+ ..+.........+......|....++..+ +.+.. -|+.+
T Consensus 73 i~~~~~~~l~~~~p~l~~~~~~~l~~----~l~~~~~~~~~l~~~~~~~Rla~~L~~l~~~~~~~~~~~~~~~~~~t~~~ 148 (193)
T TIGR03697 73 VPIEQVEKAIEEDPDLSMLLLQGLSS----RILQTEMMIETLAHRDMGSRLVSFLLILCRDFGVPGQRGVTIDLRLSHQA 148 (193)
T ss_pred eeHHHHHHHHHHChHHHHHHHHHHHH----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCCCCCeEEecCCCCHHH
Confidence 99999999999999988777766544 33333333333334444445554443322 21111 18999
Q ss_pred hhhhhhhcHHH-HHHHHHHHHccccccCCccccccCcc
Q 037278 407 LGATIYASRFA-ATTLRATRRIGTRAFTGESSCHDNSE 443 (449)
Q Consensus 407 l~~~~~~sr~a-~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (449)
||..+|++|.+ +++|+.|+++|-.+..+.+|...|.+
T Consensus 149 iA~~lG~tretvsR~l~~l~~~g~I~~~~~~i~I~d~~ 186 (193)
T TIGR03697 149 IAEAIGSTRVTITRLLGDLRKKKLISIHKKKITVHDPI 186 (193)
T ss_pred HHHHhCCcHHHHHHHHHHHHHCCCEEecCCEEEEeCHH
Confidence 99999999999 99999999999887888888888765
No 11
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=99.76 E-value=2.4e-17 Score=158.20 Aligned_cols=180 Identities=15% Similarity=0.135 Sum_probs=138.6
Q ss_pred HHHhhcceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEE--EecCCCeecHHhHHHhhccCCCCCCCCCcc
Q 037278 247 EMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGV--YLQAGDFFGEELLMWALETQSSSENLPIST 324 (449)
Q Consensus 247 ~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~--~l~~Gd~fGE~~l~~~l~~~~~~~~~p~s~ 324 (449)
.++...+.+.|++|++|+++||+++++|+|.+|.++++..+++|++.+ ++.+||+||+. .+.++ .
T Consensus 33 ~~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~------~~~~~-------~ 99 (230)
T PRK09391 33 HAGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLE------SGSTH-------R 99 (230)
T ss_pred cccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceeccc------CCCcC-------C
Confidence 345567889999999999999999999999999999998888999877 88999999953 22333 7
Q ss_pred eEEEEecceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC----
Q 037278 325 RTVRTLTEVEGLALMADDLKFAASRFRQMNGEQLEHILRFYAPEWRTWAASFIQAAWRRYIERKLKESMRGEINRL---- 400 (449)
Q Consensus 325 ~tv~Alt~t~l~~L~~~df~~ll~~~~~l~~~~l~~~~r~~s~~~~~~~~~~iq~a~~r~~~r~~~~~~~~~~er~---- 400 (449)
++++|+++|+++.+++++|.+++.++|.+....++.+.+.+ +.........+......|....+...+++..
T Consensus 100 ~~~~A~~ds~v~~i~~~~f~~l~~~~p~l~~~l~~~l~~~l----~~~~~~~~~l~~~~~~~Rla~~Ll~l~~~~g~~~~ 175 (230)
T PRK09391 100 FTAEAIVDTTVRLIKRRSLEQAAATDVDVARALLSLTAGGL----RHAQDHMLLLGRKTAMERVAAFLLEMDERLGGAGM 175 (230)
T ss_pred eEEEEcCceEEEEEEHHHHHHHHhhChHHHHHHHHHHHHHH----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCCE
Confidence 99999999999999999999999999998887777665432 2222223333333344555554444333211
Q ss_pred ---CCCCcchhhhhhhcHHH-HHHHHHHHHccccccCC-ccccccCcc
Q 037278 401 ---PDSSPSLGATIYASRFA-ATTLRATRRIGTRAFTG-ESSCHDNSE 443 (449)
Q Consensus 401 ---~~~~~~l~~~~~~sr~a-~~~~~~~~~~~~~~~~~-~~~~~~~~~ 443 (449)
+-++.+||..+|++|.+ +++|+.|+++|-....+ .++...|++
T Consensus 176 i~i~lt~~~IA~~lGisretlsR~L~~L~~~GlI~~~~~~~i~I~D~~ 223 (230)
T PRK09391 176 MALPMSRRDIADYLGLTIETVSRALSQLQDRGLIGLSGARQIELRNRQ 223 (230)
T ss_pred EEecCCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEecCCceEEEcCHH
Confidence 11889999999999999 99999999999876654 678877764
No 12
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=99.75 E-value=6.4e-17 Score=151.32 Aligned_cols=172 Identities=16% Similarity=0.147 Sum_probs=127.5
Q ss_pred hcceEEeCCCCEEecCCC--CcCeEEEEEEeEEEEEEeeCCCeeEE--EecCCCeecHHhHHHhhccCCCCCCCCCcceE
Q 037278 251 SLKQVLYTAESYIQQEGD--PVSEMFFITRGQLLTMKTTNRKRTGV--YLQAGDFFGEELLMWALETQSSSENLPISTRT 326 (449)
Q Consensus 251 ~l~~~~~~~ge~I~~eGd--~~~~myfI~~G~v~v~~~~~~G~e~~--~l~~Gd~fGE~~l~~~l~~~~~~~~~p~s~~t 326 (449)
.++...|++|++|+++|| +++++|+|++|.+++++.+++|++.+ .+.|||+||+..+ +. .++ +++
T Consensus 5 ~~~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~~~~---~~-~~~-------~~~ 73 (202)
T PRK13918 5 VVDTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGEEAL---AG-AER-------AYF 73 (202)
T ss_pred ccceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeechHHh---cC-CCC-------Cce
Confidence 467889999999999999 77999999999999998889999988 8899999999654 33 444 789
Q ss_pred EEEecceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC------CC
Q 037278 327 VRTLTEVEGLALMADDLKFAASRFRQMNGEQLEHILRFYAPEWRTWAASFIQAAWRRYIERKLKESMRGEIN------RL 400 (449)
Q Consensus 327 v~Alt~t~l~~L~~~df~~ll~~~~~l~~~~l~~~~r~~s~~~~~~~~~~iq~a~~r~~~r~~~~~~~~~~e------r~ 400 (449)
++|+++|+++.|++++| .|.+....+++..+......+ .+...+......|....+++-++. ..
T Consensus 74 ~~A~~~~~v~~i~~~~~------~~~~~~~l~~~l~~~~~~~~~----~~~~l~~~~~~~Rla~~Ll~l~~~~~~~~~~~ 143 (202)
T PRK13918 74 AEAVTDSRIDVLNPALM------SAEDNLVLTQHLVRTLARAYE----SIYRLVGQRLKNRIAAALLELSDTPLATQEDS 143 (202)
T ss_pred EEEcCceEEEEEEHHHc------ChhhHHHHHHHHHHHHHHHHH----HHHHHHhCchHHHHHHHHHHHHHHhCCCCCCC
Confidence 99999999999999987 344444444444332222222 222223333445555544332221 11
Q ss_pred CC-----CCcchhhhhhhcHHH-HHHHHHHHHccccccCCccccccCcc
Q 037278 401 PD-----SSPSLGATIYASRFA-ATTLRATRRIGTRAFTGESSCHDNSE 443 (449)
Q Consensus 401 ~~-----~~~~l~~~~~~sr~a-~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (449)
+. |+.+||..+|++|.+ +++|+.|++.|-....+.+|...|++
T Consensus 144 ~~~~~~~t~~~iA~~lG~tretvsR~l~~l~~~g~I~~~~~~i~I~d~~ 192 (202)
T PRK13918 144 GETMIYATHDELAAAVGSVRETVTKVIGELSREGYIRSGYGKIQLLDLK 192 (202)
T ss_pred CeEEecCCHHHHHHHhCccHHHHHHHHHHHHHCCCEEcCCCEEEEECHH
Confidence 11 899999999999999 99999999999887777788888765
No 13
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=99.74 E-value=3.4e-16 Score=145.87 Aligned_cols=194 Identities=20% Similarity=0.217 Sum_probs=147.8
Q ss_pred CCCCCCCcHHHHHHHHhhcceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEE--EecCCCeecHHhHHHhh
Q 037278 234 VPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGV--YLQAGDFFGEELLMWAL 311 (449)
Q Consensus 234 v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~--~l~~Gd~fGE~~l~~~l 311 (449)
.+.|..++++....+....+.+.+++|++|+++||+++.+|+|.+|.++++..+++|++.+ +++|||+||+.++ +
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~~l---~ 81 (214)
T COG0664 5 NPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGELAL---L 81 (214)
T ss_pred ccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhHHH---h
Confidence 4566667888888888889999999999999999999999999999999998888999887 8999999999999 5
Q ss_pred ccCCCCCCCCCcceEEEEecceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHH
Q 037278 312 ETQSSSENLPISTRTVRTLTEVEGLALMADDLKFAASRFRQMNGEQLEHILRFYAPEWRTWAASFIQAAWRRYIERKLKE 391 (449)
Q Consensus 312 ~~~~~~~~~p~s~~tv~Alt~t~l~~L~~~df~~ll~~~~~l~~~~l~~~~r~~s~~~~~~~~~~iq~a~~r~~~r~~~~ 391 (449)
.+.|+ +++++|+++++++.+++++|.+++.+.|.+....++...+.+ +...........+....|....
T Consensus 82 ~~~~~-------~~~~~a~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~~~~~l----~~~~~~~~~~~~~~~~~r~~~~ 150 (214)
T COG0664 82 GGDPR-------SASAVALTDVEVLEIPRKDFLELLAESPKLALALLRLLARRL----RQALERLSLLARKDVEERLARF 150 (214)
T ss_pred cCCCc-------cceEEEcceEEEEEecHHHHHHHHhhCcHHHHHHHHHHHHHH----HHHHHHHHHHhhccHHHHHHHH
Confidence 65555 899999999999999999999999886666655554444422 2222222222233333444433
Q ss_pred HHhhhcCC-----------CCCCCcchhhhhhhcHHH-HHHHHHHHHccccccCCccccccC
Q 037278 392 SMRGEINR-----------LPDSSPSLGATIYASRFA-ATTLRATRRIGTRAFTGESSCHDN 441 (449)
Q Consensus 392 ~~~~~~er-----------~~~~~~~l~~~~~~sr~a-~~~~~~~~~~~~~~~~~~~~~~~~ 441 (449)
+..-+... .+-++.+++...+.++.+ .+.+..|++.|.....+.++...+
T Consensus 151 l~~l~~~~~~~~~~~~~~~~~~~~~~ia~~~g~~~~~vsr~l~~l~~~g~i~~~~~~~~~~~ 212 (214)
T COG0664 151 LLNLGRRLGIATEDGILIPLPLTHKDLAEYLGLSRETVSRILKELRKDGLISVRGKKIIIID 212 (214)
T ss_pred HHHHhhccCCCCCCCcEEeccCCHHHHHHHhCCchhhHHHHHHHHHhCCcEeeCCceEEEec
Confidence 33333221 111889999999999999 999999999998777776665554
No 14
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=99.59 E-value=2.3e-14 Score=119.23 Aligned_cols=110 Identities=28% Similarity=0.512 Sum_probs=100.0
Q ss_pred CCCCCcHHHHHHHHhhcceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEE--EecCCCeecHHhHHHhhcc
Q 037278 236 MFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGV--YLQAGDFFGEELLMWALET 313 (449)
Q Consensus 236 lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~--~l~~Gd~fGE~~l~~~l~~ 313 (449)
+|..++++.+..++..++...+.+|++|+.+|++++++|+|.+|.++++..+++|++.. .+.+|+++|+..+ +.+
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~---~~~ 77 (115)
T cd00038 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGELAL---LGN 77 (115)
T ss_pred CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcChHHH---hcC
Confidence 57899999999999999999999999999999999999999999999998888888776 8999999999987 554
Q ss_pred CCCCCCCCCcceEEEEecceEEEEEcHHHHHHHHHHcHHHHH
Q 037278 314 QSSSENLPISTRTVRTLTEVEGLALMADDLKFAASRFRQMNG 355 (449)
Q Consensus 314 ~~~~~~~p~s~~tv~Alt~t~l~~L~~~df~~ll~~~~~l~~ 355 (449)
.++ ..+++|.++|+++.|+.++|.++++++|.+..
T Consensus 78 ~~~-------~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~ 112 (115)
T cd00038 78 GPR-------SATVRALTDSELLVLPRSDFRRLLQEYPELAR 112 (115)
T ss_pred CCC-------CceEEEcCceEEEEEeHHHHHHHHHHCcHhHH
Confidence 544 89999999999999999999999999876553
No 15
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=99.55 E-value=1.6e-13 Score=114.63 Aligned_cols=115 Identities=27% Similarity=0.362 Sum_probs=99.8
Q ss_pred CCCCCcHHHHHHHHhhcceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEE--EecCCCeecHHhHHHhhcc
Q 037278 236 MFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGV--YLQAGDFFGEELLMWALET 313 (449)
Q Consensus 236 lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~--~l~~Gd~fGE~~l~~~l~~ 313 (449)
+|.+++++.++.++..++.+.|++|++|+++|++++++|+|.+|.++++..+.+|++.. .+.+|++||+..+ +..
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~---~~~ 77 (120)
T smart00100 1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGELAL---LTN 77 (120)
T ss_pred CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEECCCCceEEEEeecCCceechhhh---ccC
Confidence 57899999999999999999999999999999999999999999999997777888766 9999999999988 521
Q ss_pred CCCCCCCCCcceEEEEecceEEEEEcHHHHHHHHHHcHHHHHHHH
Q 037278 314 QSSSENLPISTRTVRTLTEVEGLALMADDLKFAASRFRQMNGEQL 358 (449)
Q Consensus 314 ~~~~~~~p~s~~tv~Alt~t~l~~L~~~df~~ll~~~~~l~~~~l 358 (449)
.+. +...+++|.++|+++.++.+++...+.+++.+..+.+
T Consensus 78 ~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 117 (120)
T smart00100 78 SRR-----AASATAVALELATLLRIDFRDFLQLLQENPQLLLELL 117 (120)
T ss_pred CCc-----ccceEEEEEeeEEEEccCHHHHHHHHHHhHHHHHHHH
Confidence 111 1388999999999999999999999998877655443
No 16
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=99.53 E-value=1e-13 Score=111.68 Aligned_cols=88 Identities=26% Similarity=0.404 Sum_probs=80.9
Q ss_pred EEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEE--EecCCCeecHHhHHHhhccCCCCCCCCCcceEEEEecc
Q 037278 255 VLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGV--YLQAGDFFGEELLMWALETQSSSENLPISTRTVRTLTE 332 (449)
Q Consensus 255 ~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~--~l~~Gd~fGE~~l~~~l~~~~~~~~~p~s~~tv~Alt~ 332 (449)
+.|++|++|+++|++++++|+|++|.++++..+.+|+..+ .+.+|++||+..+ +.+.++ ..+++|.++
T Consensus 2 ~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~g~~~~---~~~~~~-------~~~~~a~~~ 71 (91)
T PF00027_consen 2 KTYKKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIFGEIEL---LTGKPS-------PFTVIALTD 71 (91)
T ss_dssp EEESTTEEEEETTSBESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEESGHHH---HHTSBB-------SSEEEESSS
T ss_pred eEECCCCEEEeCCCcCCEEEEEEECceEEEeceecceeeeecceeeeccccceee---cCCCcc-------EEEEEEccC
Confidence 6899999999999999999999999999998888888765 9999999999988 565554 999999999
Q ss_pred eEEEEEcHHHHHHHHHHcHH
Q 037278 333 VEGLALMADDLKFAASRFRQ 352 (449)
Q Consensus 333 t~l~~L~~~df~~ll~~~~~ 352 (449)
|+++.|++++|.++++++|.
T Consensus 72 ~~~~~i~~~~~~~~~~~~p~ 91 (91)
T PF00027_consen 72 SEVLRIPREDFLQLLQQDPE 91 (91)
T ss_dssp EEEEEEEHHHHHHHHHHSHH
T ss_pred EEEEEEeHHHHHHHHHhCcC
Confidence 99999999999999999874
No 17
>PLN02868 acyl-CoA thioesterase family protein
Probab=99.28 E-value=3.4e-11 Score=125.41 Aligned_cols=108 Identities=19% Similarity=0.366 Sum_probs=95.2
Q ss_pred hccCCCCCCCcHHHHHHHHhhcceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEE-EecCCCeecHHhHHH
Q 037278 231 AGHVPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGV-YLQAGDFFGEELLMW 309 (449)
Q Consensus 231 ~s~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~-~l~~Gd~fGE~~l~~ 309 (449)
...+++|+++++++++.++..++.+.|++||+|+++||+++.+|+|++|.++++..+.+|+..+ .+++|++||+. +
T Consensus 10 L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~ge~~l~~l~~Gd~fG~~-l-- 86 (413)
T PLN02868 10 LGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEESRPEFLLKRYDYFGYG-L-- 86 (413)
T ss_pred HhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCCcEEEEEeCCCCEeehh-h--
Confidence 3568999999999999999999999999999999999999999999999999998777774444 88999999974 3
Q ss_pred hhccCCCCCCCCCcceEEEEecceEEEEEcHHHHHHHHHHc
Q 037278 310 ALETQSSSENLPISTRTVRTLTEVEGLALMADDLKFAASRF 350 (449)
Q Consensus 310 ~l~~~~~~~~~p~s~~tv~Alt~t~l~~L~~~df~~ll~~~ 350 (449)
.+.++ ..+++|.++|+++.|+++.|..+...+
T Consensus 87 --~~~~~-------~~~~~A~~d~~v~~ip~~~~~~~~~~~ 118 (413)
T PLN02868 87 --SGSVH-------SADVVAVSELTCLVLPHEHCHLLSPKS 118 (413)
T ss_pred --CCCCc-------ccEEEECCCEEEEEEcHHHHhhhcccc
Confidence 34444 899999999999999999998776653
No 18
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.17 E-value=3.7e-11 Score=123.19 Aligned_cols=122 Identities=25% Similarity=0.440 Sum_probs=104.2
Q ss_pred ccCCCCCCCcHHHHHHHHhhcceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCC-CeeEE--EecCCCeecHHhHH
Q 037278 232 GHVPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNR-KRTGV--YLQAGDFFGEELLM 308 (449)
Q Consensus 232 s~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~-G~e~~--~l~~Gd~fGE~~l~ 308 (449)
..+|+|++++++.+..+++.++...|..|++|++||+.++.+|+|.+|.|++.+.++. +.+.. .++.||+|||-++
T Consensus 275 rsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e~~~q~~~lr~l~kGd~FGE~al- 353 (732)
T KOG0614|consen 275 RSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDEGSTQPQELRTLNKGDYFGERAL- 353 (732)
T ss_pred HhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEeecCCCCCchhHHhhccccchhhHHHh-
Confidence 3489999999999999999999999999999999999999999999999999865544 33333 8999999999999
Q ss_pred HhhccCCCCCCCCCcceEEEEecc-eEEEEEcHHHHHHHHHHcHHHHHHHHHHHHH
Q 037278 309 WALETQSSSENLPISTRTVRTLTE-VEGLALMADDLKFAASRFRQMNGEQLEHILR 363 (449)
Q Consensus 309 ~~l~~~~~~~~~p~s~~tv~Alt~-t~l~~L~~~df~~ll~~~~~l~~~~l~~~~r 363 (449)
+....+ ++++.|..+ ++++.|+++.|..++.....+..+......|
T Consensus 354 --~~edvR-------tAniia~~~gv~cl~lDresF~~liG~l~~l~ek~~~D~~r 400 (732)
T KOG0614|consen 354 --LGEDVR-------TANIIAQAPGVECLTLDRESFKKLIGDLEELKEKDYGDEER 400 (732)
T ss_pred --hccCcc-------chhhhccCCCceEEEecHHHHHHhcccHHHhhhhhccchhh
Confidence 665655 999999988 9999999999999999877666554444433
No 19
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.14 E-value=1.1e-09 Score=113.91 Aligned_cols=110 Identities=19% Similarity=0.257 Sum_probs=98.1
Q ss_pred cCCCCCCCcHHHHHHHHhhcceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEE-EecCCCeecHHhHHHhh
Q 037278 233 HVPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGV-YLQAGDFFGEELLMWAL 311 (449)
Q Consensus 233 ~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~-~l~~Gd~fGE~~l~~~l 311 (449)
..|.|+.++++++++|...+....|.+||.|+..|.|.+++|+|.+|.|++. .++|+ .+ .+..||.||-.++ +
T Consensus 11 ~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~--~~~g~-v~~~~~~gdlFg~~~l---~ 84 (610)
T COG2905 11 QHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVR--SDGGE-VLDRLAAGDLFGFSSL---F 84 (610)
T ss_pred cCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEE--cCCCe-eeeeeccCccccchhh---c
Confidence 3699999999999999999999999999999999999999999999999987 45565 55 9999999999888 4
Q ss_pred ccCCCCCCCCCcceEEEEecceEEEEEcHHHHHHHHHHcHHHHH
Q 037278 312 ETQSSSENLPISTRTVRTLTEVEGLALMADDLKFAASRFRQMNG 355 (449)
Q Consensus 312 ~~~~~~~~~p~s~~tv~Alt~t~l~~L~~~df~~ll~~~~~l~~ 355 (449)
+..+. ...+.|.+|+-+|.||++.|.++++++|.+..
T Consensus 85 ~~~~~-------~~~~~aeedsl~y~lp~s~F~ql~~~n~~f~~ 121 (610)
T COG2905 85 TELNK-------QRYMAAEEDSLCYLLPKSVFMQLMEENPEFAD 121 (610)
T ss_pred ccCCC-------cceeEeeccceEEecCHHHHHHHHHhCcHHHH
Confidence 54432 67888899999999999999999999987664
No 20
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=99.06 E-value=3e-10 Score=111.98 Aligned_cols=105 Identities=16% Similarity=0.200 Sum_probs=93.9
Q ss_pred cCCCCCCCcHHHHHHHHhhcceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeecHHhHHHhhc
Q 037278 233 HVPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFGEELLMWALE 312 (449)
Q Consensus 233 ~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fGE~~l~~~l~ 312 (449)
..-+|.+++++.+..+.+.+..+.++.|+.|++|||.++.+|+|-+|.+.+++. |+-+..+.||..|||.++ +.
T Consensus 126 ~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVyv~---~~~v~~~~~g~sFGElAL---my 199 (368)
T KOG1113|consen 126 KNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVYVN---GTYVTTYSPGGSFGELAL---MY 199 (368)
T ss_pred hccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceEEEEEC---CeEEeeeCCCCchhhhHh---hh
Confidence 367899999999999999999999999999999999999999999999999942 433339999999999999 66
Q ss_pred cCCCCCCCCCcceEEEEecceEEEEEcHHHHHHHHHHc
Q 037278 313 TQSSSENLPISTRTVRTLTEVEGLALMADDLKFAASRF 350 (449)
Q Consensus 313 ~~~~~~~~p~s~~tv~Alt~t~l~~L~~~df~~ll~~~ 350 (449)
+.|+ .+|+.|.+++.+|.|++..|..++-..
T Consensus 200 n~PR-------aATv~a~t~~klWgldr~SFrrIi~~s 230 (368)
T KOG1113|consen 200 NPPR-------AATVVAKSLKKLWGLDRTSFRRIIMKS 230 (368)
T ss_pred CCCc-------ccceeeccccceEEEeeceeEEEeecc
Confidence 6666 999999999999999999998777654
No 21
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.04 E-value=3.1e-10 Score=116.61 Aligned_cols=117 Identities=26% Similarity=0.361 Sum_probs=100.3
Q ss_pred CCCCCCCcHHHHHHHHhhcceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeecHHhHHHhhcc
Q 037278 234 VPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFGEELLMWALET 313 (449)
Q Consensus 234 v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fGE~~l~~~l~~ 313 (449)
-.+.++++++.+.+++.+|-+..|.+|++|++|||+++++|.+.+|.+++.+ +|+-.-..++|..|||.++ +.+
T Consensus 159 NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs~~yV~aeG~~~V~~---~g~ll~~m~~gtvFGELAI---Lyn 232 (732)
T KOG0614|consen 159 NDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGSHLYVSAEGELQVSR---EGKLLGKMGAGTVFGELAI---LYN 232 (732)
T ss_pred hHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCceEEEeecceEEEee---CCeeeeccCCchhhhHHHH---HhC
Confidence 4667799999999999999999999999999999999999999999999983 4544448999999999999 677
Q ss_pred CCCCCCCCCcceEEEEecceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHH
Q 037278 314 QSSSENLPISTRTVRTLTEVEGLALMADDLKFAASRFRQMNGEQLEHILR 363 (449)
Q Consensus 314 ~~~~~~~p~s~~tv~Alt~t~l~~L~~~df~~ll~~~~~l~~~~l~~~~r 363 (449)
.++ +++|+|++++.++.|+++.|+.++...-.-..++..+.+|
T Consensus 233 ctR-------tAsV~alt~~~lWaidR~vFq~IM~~tg~~r~~~~~~fLr 275 (732)
T KOG0614|consen 233 CTR-------TASVRALTDVRLWAIDREVFQAIMMRTGLERHEQYMNFLR 275 (732)
T ss_pred Ccc-------hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776 9999999999999999999999998764444444444443
No 22
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=98.69 E-value=4.1e-08 Score=97.05 Aligned_cols=112 Identities=19% Similarity=0.270 Sum_probs=98.8
Q ss_pred hccCCCCCCCcHHHHHHHHhhcceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeecHHhHHHh
Q 037278 231 AGHVPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFGEELLMWA 310 (449)
Q Consensus 231 ~s~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fGE~~l~~~ 310 (449)
...+|+++.++..+...+.+.+.++.|.+|+.|+.+|++++.+|+|.+|.|.+.... +|-++ .++.||+|||.++
T Consensus 242 l~s~pil~~l~k~er~kv~dal~~k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~~-~~v~v-kl~~~dyfge~al--- 316 (368)
T KOG1113|consen 242 LESVPILESLEKLERAKVADALGTKSYKDGERVIVQGDQGEHFYIIEEGEVDVLKKR-DGVEV-KLKKGDYFGELAL--- 316 (368)
T ss_pred hhcchhhHHHHHHHHHhhhcccceeeccCCceEEeccCCcceEEEecccccchhhcc-CCeEE-EechhhhcchHHH---
Confidence 355899999999999999999999999999999999999999999999999998544 44333 8999999999999
Q ss_pred hccCCCCCCCCCcceEEEEecceEEEEEcHHHHHHHHHHcHHHH
Q 037278 311 LETQSSSENLPISTRTVRTLTEVEGLALMADDLKFAASRFRQMN 354 (449)
Q Consensus 311 l~~~~~~~~~p~s~~tv~Alt~t~l~~L~~~df~~ll~~~~~l~ 354 (449)
+...|+ .++|.|.+...+..++++.|+.++.--..+.
T Consensus 317 ~~~~pr-------~Atv~a~~~~kc~~~dk~~ferllgpc~dil 353 (368)
T KOG1113|consen 317 LKNLPR-------AATVVAKGRLKCAKLDKPRFERLLGPCQDIL 353 (368)
T ss_pred Hhhchh-------hceeeccCCceeeeeChHHHHHHhhHHHHHH
Confidence 677776 8999999999999999999999998754433
No 23
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=98.36 E-value=5.4e-07 Score=97.78 Aligned_cols=112 Identities=19% Similarity=0.252 Sum_probs=95.3
Q ss_pred HHHHHHhhcceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCee-EE-EecCCCeecHHhHHHhhccCCCCCCCC
Q 037278 244 ILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRT-GV-YLQAGDFFGEELLMWALETQSSSENLP 321 (449)
Q Consensus 244 ~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e-~~-~l~~Gd~fGE~~l~~~l~~~~~~~~~p 321 (449)
.+..+-..+......+|+.++++||..|++|+|++|.++......+|+. ++ .++.||.+|+... +..+|+
T Consensus 500 ~lr~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~~~~~~k~~i~~EygrGd~iG~~E~---lt~~~R----- 571 (1158)
T KOG2968|consen 500 FLRKLDFALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVIRQSGGKKEIVGEYGRGDLIGEVEM---LTKQPR----- 571 (1158)
T ss_pred HHhhhhhhcceEEeccccHHHhcCCccCcEEEEecCeehhhhhccCccchhhhhccCcceeehhHH---hhcCCc-----
Confidence 4455555678899999999999999999999999999999866566665 34 9999999999998 777877
Q ss_pred CcceEEEEecceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHhh
Q 037278 322 ISTRTVRTLTEVEGLALMADDLKFAASRFRQMNGEQLEHILRFY 365 (449)
Q Consensus 322 ~s~~tv~Alt~t~l~~L~~~df~~ll~~~~~l~~~~l~~~~r~~ 365 (449)
..|+.|+-++++..||..-|..+..+||.+..+..+-.++.+
T Consensus 572 --~tTv~AvRdSelariPe~l~~~ik~ryP~v~~rl~~ll~~~~ 613 (1158)
T KOG2968|consen 572 --ATTVMAVRDSELARIPEGLLNFIKLRYPQVVTRLIKLLAEKI 613 (1158)
T ss_pred --cceEEEEeehhhhhccHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 889999999999999999999999999988776666555543
No 24
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=97.76 E-value=0.0014 Score=61.66 Aligned_cols=94 Identities=12% Similarity=0.023 Sum_probs=71.0
Q ss_pred HHHHHHhhcceEEeCCCCEE-ecCCCCcCeEEEEEEeEEEEEEeeCCCeeEE-EecCCCeecHHhHHHhhccCCCCCCCC
Q 037278 244 ILSEMCDSLKQVLYTAESYI-QQEGDPVSEMFFITRGQLLTMKTTNRKRTGV-YLQAGDFFGEELLMWALETQSSSENLP 321 (449)
Q Consensus 244 ~l~~L~~~l~~~~~~~ge~I-~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~-~l~~Gd~fGE~~l~~~l~~~~~~~~~p 321 (449)
..+.+....++..+++|..+ ..+.+..+.+++|.+|.+.+. . .+| -.+ ...+..++|-... +.+...
T Consensus 14 L~~~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsir-r-~d~-ll~~t~~aP~IlGl~~~---~~~~~~----- 82 (207)
T PRK11832 14 LDKCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLR-R-EEN-VLIGITQAPYIMGLADG---LMKNDI----- 82 (207)
T ss_pred HHHHhhccCCeEecCCCcEEeccccCCCceEEEEEeceEEEE-e-cCC-eEEEeccCCeEeecccc---cCCCCc-----
Confidence 44555666778999999997 544444577999999999994 3 344 333 7788889995544 333322
Q ss_pred CcceEEEEecceEEEEEcHHHHHHHHHHc
Q 037278 322 ISTRTVRTLTEVEGLALMADDLKFAASRF 350 (449)
Q Consensus 322 ~s~~tv~Alt~t~l~~L~~~df~~ll~~~ 350 (449)
.+..+|.++|+++.+|.+++.+++++.
T Consensus 83 --~~~l~ae~~c~~~~i~~~~~~~iie~~ 109 (207)
T PRK11832 83 --PYKLISEGNCTGYHLPAKQTITLIEQN 109 (207)
T ss_pred --eEEEEEcCccEEEEeeHHHHHHHHHHh
Confidence 578999999999999999999999985
No 25
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=97.35 E-value=0.00085 Score=73.71 Aligned_cols=130 Identities=13% Similarity=0.221 Sum_probs=97.2
Q ss_pred HHHHHHHhccCCCCCCCcHHHHHHHHhhcceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEE--EecCCCe
Q 037278 224 NLLLYMLAGHVPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGV--YLQAGDF 301 (449)
Q Consensus 224 ~l~~yml~s~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~--~l~~Gd~ 301 (449)
+-++||+.+ +.+| .....-+++.+.+...+..|++|++.|++.+.+|.+.+|.+++.....+|++.. ...||+.
T Consensus 91 ~eil~~L~~-i~~~---EkP~fl~L~rh~~t~~l~~Gd~i~~~~~~dd~i~vv~sg~l~v~~~~~~g~~~llk~V~~G~~ 166 (1158)
T KOG2968|consen 91 PEILYMLSA-IRIL---EKPVFLELDRHIETLSLDAGDYIFKPGESDDSIYVVISGELTVHIRNGDGKEYLLKTVPPGGS 166 (1158)
T ss_pred hHHHHHHHH-hHhh---ccceeeeechhhhhhcccCCceeccCCCCCceEEEEeccceEEEecCCCCceeeEeeccCCCc
Confidence 345566544 3333 112223445778889999999999999999999999999999997788899987 9999988
Q ss_pred ecHHhHHHhhccCCCCCCCCCcceEEEEecceEEEEEcHHHHHHHHHHcHHHHHHHHHH
Q 037278 302 FGEELLMWALETQSSSENLPISTRTVRTLTEVEGLALMADDLKFAASRFRQMNGEQLEH 360 (449)
Q Consensus 302 fGE~~l~~~l~~~~~~~~~p~s~~tv~Alt~t~l~~L~~~df~~ll~~~~~l~~~~l~~ 360 (449)
|-....+ ++-.|.... +..+..++|.++|.+..+|.+.|.++...||+-..+.+|-
T Consensus 167 ~tSllSi--Ld~l~~~ps-~~~~i~akA~t~~tv~~~p~~sF~~~~~k~P~s~iriiQv 222 (1158)
T KOG2968|consen 167 FTSLLSI--LDSLPGFPS-LSRTIAAKAATDCTVARIPYTSFRESFHKNPESSIRIIQV 222 (1158)
T ss_pred hHhHHHH--HHhccCCCc-ccceeeeeeecCceEEEeccchhhhhhccChHHHHHHHHH
Confidence 7766543 443332111 2347889999999999999999999999999865554444
No 26
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=97.21 E-value=0.0078 Score=53.55 Aligned_cols=108 Identities=11% Similarity=0.091 Sum_probs=82.2
Q ss_pred CCcHHHHHHHHhh-cceEEeCCCCEEecCCC-CcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeecHHhHHHhhccCCC
Q 037278 239 DWNEQILSEMCDS-LKQVLYTAESYIQQEGD-PVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFGEELLMWALETQSS 316 (449)
Q Consensus 239 ~l~~~~l~~L~~~-l~~~~~~~ge~I~~eGd-~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fGE~~l~~~l~~~~~ 316 (449)
+.+.....+|+.+ .+.....+|+.-.-||. +.|.+-++++|.+++. .+|+..-.+.|.+|....... .-++.
T Consensus 14 ~Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs---~~g~fLH~I~p~qFlDSPEW~---s~~~s 87 (153)
T PF04831_consen 14 KVSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVS---CDGRFLHYIYPYQFLDSPEWE---SLRPS 87 (153)
T ss_pred CCCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEE---ECCEeeEeecccccccChhhh---ccccC
Confidence 5688888999888 77789999999988885 6689999999999987 355544366777766655542 21111
Q ss_pred CCCCCCcceEEEEecceEEEEEcHHHHHHHHHHcHHHH
Q 037278 317 SENLPISTRTVRTLTEVEGLALMADDLKFAASRFRQMN 354 (449)
Q Consensus 317 ~~~~p~s~~tv~Alt~t~l~~L~~~df~~ll~~~~~l~ 354 (449)
....-..|+.|.++|..+..+++.+..++.+.|.+.
T Consensus 88 --~~~~FQVTitA~~~Cryl~W~R~kL~~~l~~~~~L~ 123 (153)
T PF04831_consen 88 --EDDKFQVTITAEEDCRYLCWPREKLYLLLAKDPFLA 123 (153)
T ss_pred --CCCeEEEEEEEcCCcEEEEEEHHHHHHHHhhCHHHH
Confidence 122348999999999999999999999999875543
No 27
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=97.00 E-value=0.00069 Score=61.76 Aligned_cols=48 Identities=23% Similarity=0.488 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHhhheeEeccceeecChHHHHHhcccc-cchhhhhhccCcchhhh
Q 037278 108 AIRSVLDLFYIIYIILRLRISSLLAGNLHKTVRESAIKYFMG-FFTIDLVAILPLPQVVI 166 (449)
Q Consensus 108 v~~~i~D~~f~~DIil~F~T~~~~~G~lV~d~k~Ia~~Ylk~-~F~~Dlls~lP~~~i~~ 166 (449)
+++.++|++|.+|+++++.+.... +++|+++ |.++|+++++|......
T Consensus 1 ~~~~~~~~~f~~e~~l~~~~~~~~-----------~~~y~~~~~~~~d~~~~~~~~~~~~ 49 (200)
T PF00520_consen 1 ILEIIFDVIFILEIVLRFFALGFK-----------RRRYFRSWWNWFDFISVIPSIVSVI 49 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCG------------GCCCCSHHHHHHHHHHHHHCCHHC
T ss_pred CChHHHHHHHHHHHHHHHHHhccH-----------HHHHhcChhhccccccccccccccc
Confidence 367899999999999999984443 8999998 77799999999865443
No 28
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=93.38 E-value=0.12 Score=55.68 Aligned_cols=106 Identities=14% Similarity=0.235 Sum_probs=80.9
Q ss_pred ccCCCCCCCcHHHHHHHHhhcceE-EeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeecHHhHHHh
Q 037278 232 GHVPMFSDWNEQILSEMCDSLKQV-LYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFGEELLMWA 310 (449)
Q Consensus 232 s~v~lF~~l~~~~l~~L~~~l~~~-~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fGE~~l~~~ 310 (449)
.++|-|.+|+-....+||..|... .-.+|.+|+..|+..+..+.|+.|+|++. .++|+.. .+.-|+.||...-
T Consensus 284 hqlpAFAnmtMSvrReLC~vMvFaVVe~AGtivL~dgeeLDSWsVIlNG~VEv~--~PdGk~e-~l~mGnSFG~~PT--- 357 (1283)
T KOG3542|consen 284 HQLPAFANMTMSVRRELCLVMVFAVVEDAGTIVLADGEELDSWSVILNGCVEVV--KPDGKRE-ELKMGNSFGAEPT--- 357 (1283)
T ss_pred HhchHhhcccHHHHHHHHHHHHHHHHhhcCeEEecCCcccceeEEEecceEEEe--cCCCceE-EeecccccCCCCC---
Confidence 568999999999999999987644 44689999999999999999999999998 3555543 5788999995433
Q ss_pred hccCCCCCCCCCcceEE-EEecceEEEEEcHHHHHHHHHHc
Q 037278 311 LETQSSSENLPISTRTV-RTLTEVEGLALMADDLKFAASRF 350 (449)
Q Consensus 311 l~~~~~~~~~p~s~~tv-~Alt~t~l~~L~~~df~~ll~~~ 350 (449)
.+.+ + ..--. .-+.+|+...|...|+-.++.+-
T Consensus 358 ~dkq-y------m~G~mRTkVDDCqFVciaqqDycrIln~v 391 (1283)
T KOG3542|consen 358 PDKQ-Y------MIGEMRTKVDDCQFVCIAQQDYCRILNTV 391 (1283)
T ss_pred cchh-h------hhhhhheecccceEEEeehhhHHHHHHHH
Confidence 2211 1 01122 34678999999999999888753
No 29
>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A ....
Probab=92.96 E-value=0.084 Score=41.07 Aligned_cols=42 Identities=12% Similarity=0.068 Sum_probs=38.9
Q ss_pred CCcchhhhhhhcHHH-HHHHHHHHHccccccCCccccccCccc
Q 037278 403 SSPSLGATIYASRFA-ATTLRATRRIGTRAFTGESSCHDNSEV 444 (449)
Q Consensus 403 ~~~~l~~~~~~sr~a-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (449)
++++||..+++||.+ +++|+.|++.|-....+..++..|++.
T Consensus 30 t~~~iA~~~g~sr~tv~r~l~~l~~~g~I~~~~~~i~I~d~~~ 72 (76)
T PF13545_consen 30 TQEEIADMLGVSRETVSRILKRLKDEGIIEVKRGKIIILDPER 72 (76)
T ss_dssp SHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTEEEESSHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEcCCEEEECCHHH
Confidence 899999999999999 999999999999888888999988763
No 30
>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels.
Probab=92.81 E-value=0.14 Score=40.58 Aligned_cols=32 Identities=22% Similarity=0.248 Sum_probs=21.2
Q ss_pred CcccCeeecCCCchh--HHH-HHHHHHHHHhhhhh
Q 037278 51 CFRVKKILDPQRPFR--NLI-FFILGVIAISVDPL 82 (449)
Q Consensus 51 ~~~~~~iidP~~~~~--~~~-~l~~~~~~~~v~Pl 82 (449)
.+...+||||.|+|. |.+ +++.+++.+++.|+
T Consensus 32 ~~~~~~IIHP~S~fR~~WD~~m~~~~~~~~~~iP~ 66 (77)
T PF08412_consen 32 RSSGPWIIHPFSKFRFYWDLIMLILLLYNLIIIPF 66 (77)
T ss_pred hcCCCeEEcCCccHHHHHHHHHHHHHHHHHHHHhh
Confidence 345578999999999 544 44444455555664
No 31
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=90.96 E-value=0.19 Score=32.96 Aligned_cols=27 Identities=15% Similarity=0.212 Sum_probs=23.2
Q ss_pred CCcchhhhhhhcHHH-HHHHHHHHHccc
Q 037278 403 SSPSLGATIYASRFA-ATTLRATRRIGT 429 (449)
Q Consensus 403 ~~~~l~~~~~~sr~a-~~~~~~~~~~~~ 429 (449)
+++|+|..+|.+|++ +++|+.|+++|-
T Consensus 4 tr~diA~~lG~t~ETVSR~l~~l~~~gl 31 (32)
T PF00325_consen 4 TRQDIADYLGLTRETVSRILKKLERQGL 31 (32)
T ss_dssp -HHHHHHHHTS-HHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHhCCcHHHHHHHHHHHHHcCC
Confidence 568999999999999 999999999883
No 32
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=79.94 E-value=10 Score=40.04 Aligned_cols=46 Identities=24% Similarity=0.483 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhheeEeccceeecChHHHHHhcccc-cchhhhhhccCcc
Q 037278 105 TIIAIRSVLDLFYIIYIILRLRISSLLAGNLHKTVRESAIKYFMG-FFTIDLVAILPLP 162 (449)
Q Consensus 105 ~~~v~~~i~D~~f~~DIil~F~T~~~~~G~lV~d~k~Ia~~Ylk~-~F~~Dlls~lP~~ 162 (449)
.+.+++++|-+.|-+..+++|-.+- |+ .+++|+ ==++|++|++|+-
T Consensus 241 ~l~~vE~vCi~WFT~E~llR~~~~P--------~k----~~F~k~pLNIIDllAIlPFY 287 (477)
T KOG3713|consen 241 ILTYVETVCIAWFTFEYLLRFLVAP--------NK----LEFFKSPLNIIDLLAILPFY 287 (477)
T ss_pred chHHHHHHHHHHHHHHHHHHHHcCc--------hH----HHHHhCcchHHHHHHHHHHH
Confidence 5888999999999999999997632 12 334444 3489999999974
No 33
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=79.47 E-value=6.8 Score=35.48 Aligned_cols=64 Identities=17% Similarity=0.296 Sum_probs=43.0
Q ss_pred ecCCCCcCeEEEEEEeEEEEEEeeCCCeeEE-EecCCCeecHHhHHHhhccCCCCCCCCCcceEEEEecceEEEEEcHHH
Q 037278 264 QQEGDPVSEMFFITRGQLLTMKTTNRKRTGV-YLQAGDFFGEELLMWALETQSSSENLPISTRTVRTLTEVEGLALMADD 342 (449)
Q Consensus 264 ~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~-~l~~Gd~fGE~~l~~~l~~~~~~~~~p~s~~tv~Alt~t~l~~L~~~d 342 (449)
++.. +.++++++++|.+.+- ..++|+... .+++||+|= +. ... +++-++.++|.++.|.+..
T Consensus 43 ~H~~-~tdE~FyqleG~~~l~-v~d~g~~~~v~L~eGd~fl-------vP-~gv-------pHsP~r~~~t~~LvIE~~r 105 (159)
T TIGR03037 43 FHDD-PGEEFFYQLKGEMYLK-VTEEGKREDVPIREGDIFL-------LP-PHV-------PHSPQRPAGSIGLVIERKR 105 (159)
T ss_pred cccC-CCceEEEEEcceEEEE-EEcCCcEEEEEECCCCEEE-------eC-CCC-------CcccccCCCcEEEEEEeCC
Confidence 4443 3799999999999987 444554333 899999873 22 221 5566667788888887654
Q ss_pred HH
Q 037278 343 LK 344 (449)
Q Consensus 343 f~ 344 (449)
-.
T Consensus 106 ~~ 107 (159)
T TIGR03037 106 PQ 107 (159)
T ss_pred CC
Confidence 43
No 34
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=76.55 E-value=12 Score=27.99 Aligned_cols=44 Identities=23% Similarity=0.327 Sum_probs=32.0
Q ss_pred EEeCCCCEEecCCCCcC-eEEEEEEeEEEEEEeeCCCeeEEEecCCCee
Q 037278 255 VLYTAESYIQQEGDPVS-EMFFITRGQLLTMKTTNRKRTGVYLQAGDFF 302 (449)
Q Consensus 255 ~~~~~ge~I~~eGd~~~-~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~f 302 (449)
..++||+..-..-.+.. ++++|++|.+.+. . +|+. ..+++||.+
T Consensus 3 ~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~-~--~~~~-~~l~~Gd~~ 47 (71)
T PF07883_consen 3 VTLPPGGSIPPHRHPGEDEFFYVLSGEGTLT-V--DGER-VELKPGDAI 47 (71)
T ss_dssp EEEETTEEEEEEEESSEEEEEEEEESEEEEE-E--TTEE-EEEETTEEE
T ss_pred EEECCCCCCCCEECCCCCEEEEEEECCEEEE-E--ccEE-eEccCCEEE
Confidence 46778887665555555 9999999999886 2 3332 279999975
No 35
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=75.00 E-value=4.3 Score=44.35 Aligned_cols=85 Identities=16% Similarity=0.259 Sum_probs=67.6
Q ss_pred CCCCCCCcHHHHHHHHhhcceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeecHHhHHHhhcc
Q 037278 234 VPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFGEELLMWALET 313 (449)
Q Consensus 234 v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fGE~~l~~~l~~ 313 (449)
+..|+++-...+.++|...+...++...++++.||.+...|++++|.|-+. |. ++-|-..||.. .+
T Consensus 42 ld~~snl~~~~lk~l~~~aryer~~g~~ilf~~~~var~wyillsgsv~v~-----gq---i~mp~~~fgkr------~g 107 (1283)
T KOG3542|consen 42 LDTFSNLFIGPLKALCKTARYERHPGQYILFRDGDVARSWYILLSGSVFVE-----GQ---IYMPYGCFGKR------TG 107 (1283)
T ss_pred hhhhhhhhhhhHHHhhhhhhhhcCCCceEEecccchhhheeeeeccceEee-----cc---eecCccccccc------cc
Confidence 677788888899999999999999999999999999999999999998664 22 24455556643 22
Q ss_pred CCCCCCCCCcceEEEEecceEEEEEc
Q 037278 314 QSSSENLPISTRTVRTLTEVEGLALM 339 (449)
Q Consensus 314 ~~~~~~~p~s~~tv~Alt~t~l~~L~ 339 (449)
+.+ ++++-.+++++..+++
T Consensus 108 ~~r-------~~nclllq~semivid 126 (1283)
T KOG3542|consen 108 QNR-------THNCLLLQESEMIVID 126 (1283)
T ss_pred ccc-------ccceeeecccceeeee
Confidence 323 8888889999998883
No 36
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=74.58 E-value=22 Score=30.85 Aligned_cols=68 Identities=9% Similarity=0.102 Sum_probs=42.7
Q ss_pred eEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeecHHhHHHhhccCCCCCCCCCcceEEEEecce
Q 037278 254 QVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFGEELLMWALETQSSSENLPISTRTVRTLTEV 333 (449)
Q Consensus 254 ~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fGE~~l~~~l~~~~~~~~~p~s~~tv~Alt~t 333 (449)
...++||..+-..-....++++|++|.+.+. ..++|++. .+.+||.+- +.+.. ++.+++.+++
T Consensus 39 ~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~-~i~~g~~~-~L~aGD~i~-------~~~~~--------~H~~~N~e~~ 101 (125)
T PRK13290 39 ETTIYAGTETHLHYKNHLEAVYCIEGEGEVE-DLATGEVH-PIRPGTMYA-------LDKHD--------RHYLRAGEDM 101 (125)
T ss_pred EEEECCCCcccceeCCCEEEEEEEeCEEEEE-EcCCCEEE-EeCCCeEEE-------ECCCC--------cEEEEcCCCE
Confidence 3577888755332222247999999999875 12235444 799999875 33221 5566666787
Q ss_pred EEEEE
Q 037278 334 EGLAL 338 (449)
Q Consensus 334 ~l~~L 338 (449)
+++.+
T Consensus 102 ~~l~v 106 (125)
T PRK13290 102 RLVCV 106 (125)
T ss_pred EEEEE
Confidence 77665
No 37
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=74.51 E-value=6.5 Score=30.63 Aligned_cols=42 Identities=21% Similarity=0.291 Sum_probs=29.7
Q ss_pred eCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeec
Q 037278 257 YTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFG 303 (449)
Q Consensus 257 ~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fG 303 (449)
..||..-..-. .+++.+|++|.+.+. .++|... .+++||.+-
T Consensus 14 ~~pg~~~~~~~--~~E~~~vleG~v~it--~~~G~~~-~~~aGD~~~ 55 (74)
T PF05899_consen 14 CTPGKFPWPYP--EDEFFYVLEGEVTIT--DEDGETV-TFKAGDAFF 55 (74)
T ss_dssp EECEEEEEEES--SEEEEEEEEEEEEEE--ETTTEEE-EEETTEEEE
T ss_pred ECCceeEeeCC--CCEEEEEEEeEEEEE--ECCCCEE-EEcCCcEEE
Confidence 45555433332 288999999999986 5577664 699999874
No 38
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=69.94 E-value=9.8 Score=35.07 Aligned_cols=65 Identities=15% Similarity=0.225 Sum_probs=43.6
Q ss_pred CCcCeEEEEEEeEEEEEEeeCCCeeEE-EecCCCeecHHhHHHhhccCCCCCCCCCcceEEEEecceEEEEEcHHHHHHH
Q 037278 268 DPVSEMFFITRGQLLTMKTTNRKRTGV-YLQAGDFFGEELLMWALETQSSSENLPISTRTVRTLTEVEGLALMADDLKFA 346 (449)
Q Consensus 268 d~~~~myfI~~G~v~v~~~~~~G~e~~-~l~~Gd~fGE~~l~~~l~~~~~~~~~p~s~~tv~Alt~t~l~~L~~~df~~l 346 (449)
++.++++++++|.+.+.. .++|+... .+++||+|= +. ... +++-++.++|..+.+.+..-...
T Consensus 52 ~~tdE~FyqleG~~~l~v-~d~g~~~~v~L~eGd~fl-------lP-~gv-------pHsP~r~~~tv~LviE~~r~~~~ 115 (177)
T PRK13264 52 DPGEEFFYQLEGDMYLKV-QEDGKRRDVPIREGEMFL-------LP-PHV-------PHSPQREAGSIGLVIERKRPEGE 115 (177)
T ss_pred CCCceEEEEECCeEEEEE-EcCCceeeEEECCCCEEE-------eC-CCC-------CcCCccCCCeEEEEEEeCCCCCC
Confidence 567899999999998873 34554333 899999873 22 221 45556678888888876654443
Q ss_pred HH
Q 037278 347 AS 348 (449)
Q Consensus 347 l~ 348 (449)
++
T Consensus 116 ~d 117 (177)
T PRK13264 116 LD 117 (177)
T ss_pred cc
Confidence 33
No 39
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=67.24 E-value=18 Score=31.81 Aligned_cols=52 Identities=17% Similarity=0.253 Sum_probs=36.6
Q ss_pred cceEEeCCCCEEecCCCC-cCeEEEEEEeEEEEEEeeCCCeeEE--EecCCCeec
Q 037278 252 LKQVLYTAESYIQQEGDP-VSEMFFITRGQLLTMKTTNRKRTGV--YLQAGDFFG 303 (449)
Q Consensus 252 l~~~~~~~ge~I~~eGd~-~~~myfI~~G~v~v~~~~~~G~e~~--~l~~Gd~fG 303 (449)
+....+.||...-..-.+ .+++++|++|...+.....+|++.. .+.+||.+-
T Consensus 32 ~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~ 86 (146)
T smart00835 32 AARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFV 86 (146)
T ss_pred EEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEE
Confidence 445677888876544433 6789999999999985444444433 899999764
No 40
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=64.12 E-value=16 Score=37.32 Aligned_cols=48 Identities=15% Similarity=0.353 Sum_probs=34.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhheeEeccceeecChHHH-HHhcccccchhhhhhccCc
Q 037278 102 LGTTIIAIRSVLDLFYIIYIILRLRISSLLAGNLHKTVRES-AIKYFMGFFTIDLVAILPL 161 (449)
Q Consensus 102 ~~~~~~v~~~i~D~~f~~DIil~F~T~~~~~G~lV~d~k~I-a~~Ylk~~F~~Dlls~lP~ 161 (449)
+.-.+.+++++|=+.|-+..+++|...-- |.. ++|- -=++|++|++|+
T Consensus 251 f~dPFFiVEt~CIiWFtfEllvRf~aCPs---------K~~Ff~ni---mNiIDiVaI~Py 299 (507)
T KOG1545|consen 251 FTDPFFIVETLCIIWFTFELLVRFFACPS---------KATFFRNI---MNIIDIVAIIPY 299 (507)
T ss_pred cCCchHhHHHHHHHHHhHHHHHHHhcCcc---------HHHHHHHH---HHHHHHHHHHHH
Confidence 34457889999999999999999987321 111 1121 238999999996
No 41
>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family.
Probab=63.47 E-value=17 Score=26.81 Aligned_cols=37 Identities=14% Similarity=0.094 Sum_probs=30.6
Q ss_pred CCcchhhhhhhcHHH-HHHHHHHHHccccccCC-ccccc
Q 037278 403 SSPSLGATIYASRFA-ATTLRATRRIGTRAFTG-ESSCH 439 (449)
Q Consensus 403 ~~~~l~~~~~~sr~a-~~~~~~~~~~~~~~~~~-~~~~~ 439 (449)
+..+|+..++.|+.+ .+.|+.|++.|-....+ ..+++
T Consensus 27 s~~ela~~~g~s~~tv~r~l~~L~~~g~i~~~~~~~~~l 65 (67)
T cd00092 27 TRQEIADYLGLTRETVSRTLKELEEEGLISRRGRGKYRV 65 (67)
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCeEEe
Confidence 889999999999999 99999999999765544 34444
No 42
>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain. This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins.
Probab=58.03 E-value=8.1 Score=31.69 Aligned_cols=32 Identities=13% Similarity=0.081 Sum_probs=28.3
Q ss_pred CCcchhhhhhhcHHH-HHHHHHHHHccccccCC
Q 037278 403 SSPSLGATIYASRFA-ATTLRATRRIGTRAFTG 434 (449)
Q Consensus 403 ~~~~l~~~~~~sr~a-~~~~~~~~~~~~~~~~~ 434 (449)
++.+||..++++|.+ +++|+.|.+.|-....+
T Consensus 49 s~~eLa~~~g~sr~tVsr~L~~Le~~GlI~r~~ 81 (95)
T TIGR01610 49 TATVIAELTGLSRTHVSDAIKSLARRRIIFRQG 81 (95)
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCCeeeec
Confidence 889999999999999 99999999999754444
No 43
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=53.40 E-value=38 Score=29.11 Aligned_cols=47 Identities=17% Similarity=0.223 Sum_probs=34.4
Q ss_pred cceEEeCCCCEE-ecCCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCee
Q 037278 252 LKQVLYTAESYI-QQEGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFF 302 (449)
Q Consensus 252 l~~~~~~~ge~I-~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~f 302 (449)
.+...+++|+-+ .+--...+++|+|++|...+.. +|++ +.+++||.+
T Consensus 38 ~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~---~~~~-~~v~~gd~~ 85 (127)
T COG0662 38 IARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTI---GGEE-VEVKAGDSV 85 (127)
T ss_pred EEEEEECCCcccCcccccCcceEEEEEeeEEEEEE---CCEE-EEecCCCEE
Confidence 556777888875 5555558999999999999872 2333 368888875
No 44
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=53.03 E-value=64 Score=30.13 Aligned_cols=52 Identities=8% Similarity=0.054 Sum_probs=35.5
Q ss_pred cceEEeCCCCEE---------ecCCCCcCeEEEEEEeEEEEEEeeCCCeeEE-EecCCCeec
Q 037278 252 LKQVLYTAESYI---------QQEGDPVSEMFFITRGQLLTMKTTNRKRTGV-YLQAGDFFG 303 (449)
Q Consensus 252 l~~~~~~~ge~I---------~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~-~l~~Gd~fG 303 (449)
+-...+.||... +++.....++|++++|...+...+.+|.... .+.+||.+=
T Consensus 70 ~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~~~~~v~pGd~v~ 131 (191)
T PRK04190 70 FGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEARWIEMEPGTVVY 131 (191)
T ss_pred EEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcEEEEEECCCCEEE
Confidence 345666777743 3444445699999999999885455554333 899999763
No 45
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=52.72 E-value=42 Score=34.66 Aligned_cols=51 Identities=12% Similarity=0.106 Sum_probs=36.5
Q ss_pred ceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEE-EecCCCeec
Q 037278 253 KQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGV-YLQAGDFFG 303 (449)
Q Consensus 253 ~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~-~l~~Gd~fG 303 (449)
....+.+|...-.---...++.++++|.+++...+.+|+..+ .+++||.+-
T Consensus 70 ~~~~l~pG~~~~~HwH~~~E~~yVl~G~~~v~~~d~~g~~~~~~L~~GD~~~ 121 (367)
T TIGR03404 70 VNMRLEPGAIRELHWHKEAEWAYVLYGSCRITAVDENGRNYIDDVGAGDLWY 121 (367)
T ss_pred eEEEEcCCCCCCcccCCCceEEEEEeeEEEEEEEcCCCcEEEeEECCCCEEE
Confidence 345667777543222245689999999999986666788776 899999874
No 46
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=50.07 E-value=48 Score=34.19 Aligned_cols=51 Identities=16% Similarity=0.054 Sum_probs=36.9
Q ss_pred cceEEeCCCCEEecC-CCCcCeEEEEEEeEEEEEEeeCCCeeEE-EecCCCee
Q 037278 252 LKQVLYTAESYIQQE-GDPVSEMFFITRGQLLTMKTTNRKRTGV-YLQAGDFF 302 (449)
Q Consensus 252 l~~~~~~~ge~I~~e-Gd~~~~myfI~~G~v~v~~~~~~G~e~~-~l~~Gd~f 302 (449)
+....+.||...-.- -...+++++|++|.+++...+.+|+..+ .+++||.+
T Consensus 247 ~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~v~d~~g~~~~~~l~~GD~~ 299 (367)
T TIGR03404 247 AAIVTVEPGAMRELHWHPNADEWQYFIQGQARMTVFAAGGNARTFDYQAGDVG 299 (367)
T ss_pred EEEEEECCCCccCCeeCcCCCeEEEEEEEEEEEEEEecCCcEEEEEECCCCEE
Confidence 456677788765332 2336799999999999986566666545 89999975
No 47
>COG1654 BirA Biotin operon repressor [Transcription]
Probab=47.84 E-value=32 Score=27.41 Aligned_cols=26 Identities=27% Similarity=0.254 Sum_probs=25.0
Q ss_pred CCcchhhhhhhcHHH-HHHHHHHHHcc
Q 037278 403 SSPSLGATIYASRFA-ATTLRATRRIG 428 (449)
Q Consensus 403 ~~~~l~~~~~~sr~a-~~~~~~~~~~~ 428 (449)
+.+.||..++.||-| .+.++.||+.|
T Consensus 21 SGe~La~~LgiSRtaVwK~Iq~Lr~~G 47 (79)
T COG1654 21 SGEKLAEELGISRTAVWKHIQQLREEG 47 (79)
T ss_pred cHHHHHHHHCccHHHHHHHHHHHHHhC
Confidence 789999999999999 99999999999
No 48
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=43.97 E-value=61 Score=27.70 Aligned_cols=48 Identities=17% Similarity=0.220 Sum_probs=37.6
Q ss_pred cceEEeCCCCEEecCCCC-cCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeec
Q 037278 252 LKQVLYTAESYIQQEGDP-VSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFG 303 (449)
Q Consensus 252 l~~~~~~~ge~I~~eGd~-~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fG 303 (449)
.....+.||+.+-.---+ .+...+|++|.++.. .. |... .+.+||++-
T Consensus 45 ~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~-~~--g~~~-~l~~Gd~i~ 93 (131)
T COG1917 45 VVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQ-LE--GEKK-ELKAGDVII 93 (131)
T ss_pred EEEEEECCCcccccccCCCcceEEEEEecEEEEE-ec--CCce-EecCCCEEE
Confidence 446788999998887777 779999999999987 22 3333 699999876
No 49
>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein.
Probab=43.62 E-value=21 Score=24.35 Aligned_cols=32 Identities=16% Similarity=0.207 Sum_probs=27.3
Q ss_pred CCcchhhhhhhcHHH-HHHHHHHHHccccccCC
Q 037278 403 SSPSLGATIYASRFA-ATTLRATRRIGTRAFTG 434 (449)
Q Consensus 403 ~~~~l~~~~~~sr~a-~~~~~~~~~~~~~~~~~ 434 (449)
++.+++..++.|+-+ .++|+.|.+.|-....+
T Consensus 10 s~~~la~~l~~s~~tv~~~l~~L~~~g~l~~~~ 42 (48)
T smart00419 10 TRQEIAELLGLTRETVSRTLKRLEKEGLISREG 42 (48)
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeC
Confidence 678999999999999 99999999999654333
No 50
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=43.19 E-value=84 Score=26.97 Aligned_cols=44 Identities=20% Similarity=0.222 Sum_probs=31.3
Q ss_pred EEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeec
Q 037278 255 VLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFG 303 (449)
Q Consensus 255 ~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fG 303 (449)
-..+||+.=..-++ ++..-|++|.+++. .++| +.+.+++||.|=
T Consensus 50 We~TpG~~r~~y~~--~E~chil~G~v~~T--~d~G-e~v~~~aGD~~~ 93 (116)
T COG3450 50 WECTPGKFRVTYDE--DEFCHILEGRVEVT--PDGG-EPVEVRAGDSFV 93 (116)
T ss_pred EEecCccceEEccc--ceEEEEEeeEEEEE--CCCC-eEEEEcCCCEEE
Confidence 34566666555555 88899999999875 4454 445799999763
No 51
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=39.71 E-value=80 Score=25.23 Aligned_cols=63 Identities=17% Similarity=0.209 Sum_probs=42.7
Q ss_pred cceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeecHHhHHHhhccCCCCCCCCCcceEEEEec
Q 037278 252 LKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFGEELLMWALETQSSSENLPISTRTVRTLT 331 (449)
Q Consensus 252 l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fGE~~l~~~l~~~~~~~~~p~s~~tv~Alt 331 (449)
.....+.||..+=...-++.+..||++|.+. +++| .+.+||+.= .+.. +..+..+-+
T Consensus 26 ~~L~r~~pG~~~p~H~H~g~ee~~VLeG~~~----d~~~----~~~~G~~~~--------~p~g-------~~h~~~s~~ 82 (91)
T PF12973_consen 26 VSLLRLEPGASLPRHRHPGGEEILVLEGELS----DGDG----RYGAGDWLR--------LPPG-------SSHTPRSDE 82 (91)
T ss_dssp EEEEEE-TTEEEEEEEESS-EEEEEEECEEE----ETTC----EEETTEEEE--------E-TT-------EEEEEEESS
T ss_pred EEEEEECCCCCcCccCCCCcEEEEEEEEEEE----ECCc----cCCCCeEEE--------eCCC-------CccccCcCC
Confidence 4557788888887767777888899999975 2333 378898853 2111 377888888
Q ss_pred ceEEEE
Q 037278 332 EVEGLA 337 (449)
Q Consensus 332 ~t~l~~ 337 (449)
.|.++.
T Consensus 83 gc~~~v 88 (91)
T PF12973_consen 83 GCLILV 88 (91)
T ss_dssp CEEEEE
T ss_pred CEEEEE
Confidence 888765
No 52
>PRK10141 DNA-binding transcriptional repressor ArsR; Provisional
Probab=37.53 E-value=37 Score=29.09 Aligned_cols=43 Identities=14% Similarity=0.037 Sum_probs=34.3
Q ss_pred CCcchhhhhhhcHHH-HHHHHHHHHccc---cccCCccccccCcccc
Q 037278 403 SSPSLGATIYASRFA-ATTLRATRRIGT---RAFTGESSCHDNSEVS 445 (449)
Q Consensus 403 ~~~~l~~~~~~sr~a-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 445 (449)
+-.+|+..++.++-+ ++-|+.|++.|- ++..+++.+.+|+++.
T Consensus 32 ~v~ela~~l~lsqstvS~HL~~L~~AGLV~~~r~Gr~~~Y~l~~~~~ 78 (117)
T PRK10141 32 CVCDLCTALDQSQPKISRHLALLRESGLLLDRKQGKWVHYRLSPHIP 78 (117)
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEEEcCEEEEEECchHH
Confidence 456899999999999 999999999994 3445566788888653
No 53
>PHA00738 putative HTH transcription regulator
Probab=36.27 E-value=55 Score=27.70 Aligned_cols=43 Identities=12% Similarity=-0.007 Sum_probs=33.0
Q ss_pred CCcchhhhhhhcHHH-HHHHHHHHHccc---cccCCccccccCcccc
Q 037278 403 SSPSLGATIYASRFA-ATTLRATRRIGT---RAFTGESSCHDNSEVS 445 (449)
Q Consensus 403 ~~~~l~~~~~~sr~a-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 445 (449)
+--+|+..+.+|+-| ++-|+.|++.|- ++....+.+.+|+|..
T Consensus 28 ~V~eLae~l~lSQptVS~HLKvLreAGLV~srK~Gr~vyY~Ln~~~~ 74 (108)
T PHA00738 28 SASLISHTLLLSYTTVLRHLKILNEQGYIELYKEGRTLYAKIRENSK 74 (108)
T ss_pred cHHHHHHhhCCCHHHHHHHHHHHHHCCceEEEEECCEEEEEECCCcc
Confidence 345799999999999 999999999993 4445556677776653
No 54
>PRK11171 hypothetical protein; Provisional
Probab=35.11 E-value=1e+02 Score=30.12 Aligned_cols=49 Identities=16% Similarity=0.192 Sum_probs=37.8
Q ss_pred hcceEEeCCCCEEec-CCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeec
Q 037278 251 SLKQVLYTAESYIQQ-EGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFG 303 (449)
Q Consensus 251 ~l~~~~~~~ge~I~~-eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fG 303 (449)
.+....++||..+-. +.....+.++|++|++.+. .+|++. .+.+||++-
T Consensus 185 ~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~---~~~~~~-~l~~GD~i~ 234 (266)
T PRK11171 185 HVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYR---LNNDWV-EVEAGDFIW 234 (266)
T ss_pred EEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEE---ECCEEE-EeCCCCEEE
Confidence 456688999999876 4677779999999999986 344443 699999764
No 55
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=34.05 E-value=1.4e+02 Score=26.84 Aligned_cols=61 Identities=11% Similarity=0.225 Sum_probs=34.8
Q ss_pred CCcCeEEEEEEeEEEEEEeeCCCeeEE-EecCCCeecHHhHHHhhccCCCCCCCCCcceEEEEecceEEEEEcHHHHH
Q 037278 268 DPVSEMFFITRGQLLTMKTTNRKRTGV-YLQAGDFFGEELLMWALETQSSSENLPISTRTVRTLTEVEGLALMADDLK 344 (449)
Q Consensus 268 d~~~~myfI~~G~v~v~~~~~~G~e~~-~l~~Gd~fGE~~l~~~l~~~~~~~~~p~s~~tv~Alt~t~l~~L~~~df~ 344 (449)
++..++++-++|.+.+-. .++|+... .+++||.|= -+... +++-+=-.+|..+++.++.-.
T Consensus 51 ne~eE~FyQ~kG~m~Lkv-~e~g~~kdi~I~EGe~fL--------LP~~v-------pHsP~R~~~tiGLViEr~R~~ 112 (151)
T PF06052_consen 51 NETEEFFYQLKGDMCLKV-VEDGKFKDIPIREGEMFL--------LPANV-------PHSPQRPADTIGLVIERKRPE 112 (151)
T ss_dssp -SS-EEEEEEES-EEEEE-EETTEEEEEEE-TTEEEE--------E-TT---------EEEEE-TT-EEEEEEE---T
T ss_pred CCcceEEEEEeCcEEEEE-EeCCceEEEEeCCCcEEe--------cCCCC-------CCCCcCCCCcEEEEEEeccCC
Confidence 456689999999988874 44566555 999999884 22211 455555578888888776443
No 56
>PF13730 HTH_36: Helix-turn-helix domain
Probab=34.03 E-value=90 Score=22.16 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=24.4
Q ss_pred CCcchhhhhhhcHHH-HHHHHHHHHcc
Q 037278 403 SSPSLGATIYASRFA-ATTLRATRRIG 428 (449)
Q Consensus 403 ~~~~l~~~~~~sr~a-~~~~~~~~~~~ 428 (449)
++..|+...+.|+-+ .++++.|.+.|
T Consensus 27 S~~~la~~~g~s~~Tv~~~i~~L~~~G 53 (55)
T PF13730_consen 27 SQETLAKDLGVSRRTVQRAIKELEEKG 53 (55)
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCc
Confidence 778999999999999 99999999987
No 57
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=33.25 E-value=58 Score=29.45 Aligned_cols=45 Identities=18% Similarity=0.222 Sum_probs=30.9
Q ss_pred EEeCCCC--EEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeec
Q 037278 255 VLYTAES--YIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFG 303 (449)
Q Consensus 255 ~~~~~ge--~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fG 303 (449)
..++||- ...+--...+++..|++|..... .++|.. .++|||+.|
T Consensus 47 ~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~--~d~~e~--~lrpGD~~g 93 (161)
T COG3837 47 EIVEPGGESSLRHWHSAEDEFVYILEGEGTLR--EDGGET--RLRPGDSAG 93 (161)
T ss_pred EEeCCCCccccccccccCceEEEEEcCceEEE--ECCeeE--EecCCceee
Confidence 3444443 33444466789999999998876 344444 699999988
No 58
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=31.57 E-value=58 Score=23.06 Aligned_cols=28 Identities=25% Similarity=0.181 Sum_probs=25.1
Q ss_pred CCcchhhhhhhcHHH-HHHHHHHHHcccc
Q 037278 403 SSPSLGATIYASRFA-ATTLRATRRIGTR 430 (449)
Q Consensus 403 ~~~~l~~~~~~sr~a-~~~~~~~~~~~~~ 430 (449)
+..+|+...+.|+-+ .++++.|.+.|-.
T Consensus 22 s~~~la~~~~vs~~tv~~~l~~L~~~g~i 50 (60)
T smart00345 22 SERELAAQLGVSRTTVREALSRLEAEGLV 50 (60)
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCCE
Confidence 567899999999999 9999999999953
No 59
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=30.06 E-value=1.1e+02 Score=26.67 Aligned_cols=51 Identities=18% Similarity=0.163 Sum_probs=35.3
Q ss_pred ceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCe-----eEE-E--ecCCCeec
Q 037278 253 KQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKR-----TGV-Y--LQAGDFFG 303 (449)
Q Consensus 253 ~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~-----e~~-~--l~~Gd~fG 303 (449)
....++||....-.=..+.++.+|.+|...+....+++. ... . +++||++-
T Consensus 37 ~~~~i~pg~~~~Ph~h~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~~~~v~l~~Gdv~~ 95 (144)
T PF00190_consen 37 RRVLIEPGGLRAPHYHNADEIVYVIEGRGRVGVVGPGGPQEEFRDFSQKVRLKAGDVFV 95 (144)
T ss_dssp EEEEEETTEEEEEEEESSEEEEEEEESEEEEEEEETTCSSSEEEEEEEEEEEETTEEEE
T ss_pred EeeehhcCCccceeEeeeeEEeeeeccceEEEEEecCCccccceeeeceeeeeccccee
Confidence 345557777664443478999999999999765566541 222 5 99999885
No 60
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=29.73 E-value=2.1e+02 Score=25.72 Aligned_cols=50 Identities=20% Similarity=0.142 Sum_probs=32.2
Q ss_pred cCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeecHHhHHHhhccCCCCCCCCCcceEEEEecceEEEEE
Q 037278 270 VSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFGEELLMWALETQSSSENLPISTRTVRTLTEVEGLAL 338 (449)
Q Consensus 270 ~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fGE~~l~~~l~~~~~~~~~p~s~~tv~Alt~t~l~~L 338 (449)
.++|.+|++|.+.+. .+|+.. ..++||.+= +. +. ++.+..+-+.+.++..
T Consensus 95 YDEi~~VlEG~L~i~---~~G~~~-~A~~GDvi~-------iP-kG-------s~I~fst~~~a~~~Yv 144 (152)
T PF06249_consen 95 YDEIKYVLEGTLEIS---IDGQTV-TAKPGDVIF-------IP-KG-------STITFSTPDYARFFYV 144 (152)
T ss_dssp SEEEEEEEEEEEEEE---ETTEEE-EEETT-EEE-------E--TT--------EEEEEEEEEEEEEEE
T ss_pred cceEEEEEEeEEEEE---ECCEEE-EEcCCcEEE-------EC-CC-------CEEEEecCCCEEEEEE
Confidence 588999999999886 346554 689999863 33 32 2556666666666654
No 61
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=28.89 E-value=1.8e+02 Score=27.60 Aligned_cols=50 Identities=16% Similarity=0.290 Sum_probs=34.3
Q ss_pred ceEEeCCCC---EEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEE-EecCCCee
Q 037278 253 KQVLYTAES---YIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGV-YLQAGDFF 302 (449)
Q Consensus 253 ~~~~~~~ge---~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~-~l~~Gd~f 302 (449)
.....++|+ .=++++-.-.++|++++|..+......+|+-.+ ..++||.+
T Consensus 83 ~e~~~t~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~~~G~~~v~~~~~Gd~i 136 (209)
T COG2140 83 AEVFKTPGAMRELHYHPNADEPEIYYVLKGEGRMLVQKPEGEARVIAVRAGDVI 136 (209)
T ss_pred eEEEecCCcccccccCCCCCcccEEEEEeccEEEEEEcCCCcEEEEEecCCcEE
Confidence 344555551 123344444469999999999887778888777 88889865
No 62
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=25.92 E-value=97 Score=17.69 Aligned_cols=17 Identities=53% Similarity=0.858 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 037278 373 AASFIQAAWRRYIERKL 389 (449)
Q Consensus 373 ~~~~iq~a~~r~~~r~~ 389 (449)
++..+|..|+.+..|+.
T Consensus 3 aai~iQ~~~R~~~~Rk~ 19 (21)
T PF00612_consen 3 AAIIIQSYWRGYLARKR 19 (21)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 57889999999887764
No 63
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=25.14 E-value=2e+02 Score=27.22 Aligned_cols=71 Identities=18% Similarity=0.231 Sum_probs=51.1
Q ss_pred hcceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeecHHhHHHhhccCCCCCCCCCcceEEEEe
Q 037278 251 SLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFGEELLMWALETQSSSENLPISTRTVRTL 330 (449)
Q Consensus 251 ~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fGE~~l~~~l~~~~~~~~~p~s~~tv~Al 330 (449)
......+.||..+-.....+.++.+|++|... +++| .+.+||+.= +.+. +..+.+|.
T Consensus 128 ~v~Ll~i~pG~~~p~H~H~G~E~tlVLeG~f~----de~g----~y~~Gd~i~-------~p~~--------~~H~p~a~ 184 (215)
T TIGR02451 128 RVRLLYIEAGQSIPQHTHKGFELTLVLHGAFS----DETG----VYGVGDFEE-------ADGS--------VQHQPRTV 184 (215)
T ss_pred EEEEEEECCCCccCCCcCCCcEEEEEEEEEEE----cCCC----ccCCCeEEE-------CCCC--------CCcCcccC
Confidence 45678899999999999999999999999953 3333 388999864 2322 25666777
Q ss_pred cc--eEEEEEcHHHHH
Q 037278 331 TE--VEGLALMADDLK 344 (449)
Q Consensus 331 t~--t~l~~L~~~df~ 344 (449)
++ |.++.+.-..++
T Consensus 185 ~~~~Cicl~v~dapl~ 200 (215)
T TIGR02451 185 SGGDCLCLAVLDAPLR 200 (215)
T ss_pred CCCCeEEEEEecCCcc
Confidence 44 888887665553
No 64
>cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators. This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is
Probab=25.12 E-value=1.7e+02 Score=20.90 Aligned_cols=28 Identities=25% Similarity=0.216 Sum_probs=25.2
Q ss_pred CCcchhhhhhhcHHH-HHHHHHHHHcccc
Q 037278 403 SSPSLGATIYASRFA-ATTLRATRRIGTR 430 (449)
Q Consensus 403 ~~~~l~~~~~~sr~a-~~~~~~~~~~~~~ 430 (449)
+..+|+..++.|+.+ .++++.|.+.|-.
T Consensus 27 ~~~~la~~~~is~~~v~~~l~~L~~~G~i 55 (66)
T cd07377 27 SERELAEELGVSRTTVREALRELEAEGLV 55 (66)
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCCE
Confidence 467899999999999 9999999999964
No 65
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=24.18 E-value=1.6e+02 Score=28.76 Aligned_cols=50 Identities=10% Similarity=0.109 Sum_probs=37.6
Q ss_pred HhhcceEEeCCCCEEe-cCCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCee
Q 037278 249 CDSLKQVLYTAESYIQ-QEGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFF 302 (449)
Q Consensus 249 ~~~l~~~~~~~ge~I~-~eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~f 302 (449)
...+....++||..+- .+-..-.+.++|++|+.... .||++. .+.+||++
T Consensus 178 ~~~~~~~~~~PG~~~~~~~~H~~eh~~yiL~G~G~~~---~~g~~~-~V~~GD~i 228 (260)
T TIGR03214 178 DMNVHILSFEPGASHPYIETHVMEHGLYVLEGKGVYN---LDNNWV-PVEAGDYI 228 (260)
T ss_pred CcEEEEEEECCCcccCCcccccceeEEEEEeceEEEE---ECCEEE-EecCCCEE
Confidence 4456778999999994 45555678999999998865 345443 68999986
No 66
>PRK11171 hypothetical protein; Provisional
Probab=23.95 E-value=1.8e+02 Score=28.44 Aligned_cols=47 Identities=15% Similarity=0.153 Sum_probs=32.0
Q ss_pred ceEEeCCCCEEecCCC--CcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeec
Q 037278 253 KQVLYTAESYIQQEGD--PVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFG 303 (449)
Q Consensus 253 ~~~~~~~ge~I~~eGd--~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fG 303 (449)
....++||...-.... ..+++++|++|.+++. . +|++. .+.+||.+=
T Consensus 64 ~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~-~--~g~~~-~L~~GDsi~ 112 (266)
T PRK11171 64 YLVEVEPGGGSDQPEPDEGAETFLFVVEGEITLT-L--EGKTH-ALSEGGYAY 112 (266)
T ss_pred EEEEECCCCcCCCCCCCCCceEEEEEEeCEEEEE-E--CCEEE-EECCCCEEE
Confidence 4567788775433332 2468999999999987 2 44443 699999764
No 67
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=23.26 E-value=2.6e+02 Score=27.17 Aligned_cols=75 Identities=17% Similarity=0.170 Sum_probs=46.4
Q ss_pred cceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeecHHh----HHHhhccCCCCC--CCCCcce
Q 037278 252 LKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFGEEL----LMWALETQSSSE--NLPISTR 325 (449)
Q Consensus 252 l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fGE~~----l~~~l~~~~~~~--~~p~s~~ 325 (449)
++...+.+|+..-.+-...+....++.|++.+.. + |+.||++. . |+..|... --.-++.
T Consensus 31 F~~~~L~~Ges~~~~~~~~E~clV~v~Gk~~vs~---~---------g~~f~~iG~R~Sv---Fe~~p~~~vYvp~g~~~ 95 (270)
T COG3718 31 FRLLRLAAGESATEETGDRERCLVLVTGKATVSA---H---------GSTFGEIGTRMSV---FERKPPDSVYVPAGSAF 95 (270)
T ss_pred EEEEEccCCCcccccCCCceEEEEEEeeeEEEee---c---------cchHhhccccccc---ccCCCCCeEEecCCceE
Confidence 3556778899887777777788889999998862 2 22333322 1 23222000 0001378
Q ss_pred EEEEecceEEEEEcHH
Q 037278 326 TVRTLTEVEGLALMAD 341 (449)
Q Consensus 326 tv~Alt~t~l~~L~~~ 341 (449)
++.|.+++++...++-
T Consensus 96 ~vtA~t~~~vAvC~AP 111 (270)
T COG3718 96 SVTATTDLEVAVCSAP 111 (270)
T ss_pred EEEeecceEEEEEeCC
Confidence 9999999887776543
No 68
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=23.20 E-value=3.5e+02 Score=28.02 Aligned_cols=64 Identities=16% Similarity=0.134 Sum_probs=36.1
Q ss_pred eEEEEEcHHHHHHHHHH--------cHHHHH-------------HHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHH
Q 037278 333 VEGLALMADDLKFAASR--------FRQMNG-------------EQLEHILRFYAPEWRTWAASFIQAAWRRYIERKLKE 391 (449)
Q Consensus 333 t~l~~L~~~df~~ll~~--------~~~l~~-------------~~l~~~~r~~s~~~~~~~~~~iq~a~~r~~~r~~~~ 391 (449)
+++-.|+.+||..++.+ |..+.. +.+....-...+...+.||.-++. ...|.++.
T Consensus 331 VEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhT----vlErlLed 406 (444)
T COG1220 331 VELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHT----VLERLLED 406 (444)
T ss_pred EEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHHhcccccchhHHHHHH----HHHHHHHH
Confidence 67888999999987764 433221 222222222334445566655555 45566666
Q ss_pred HHhhhcCCC
Q 037278 392 SMRGEINRL 400 (449)
Q Consensus 392 ~~~~~~er~ 400 (449)
+.-+|.++.
T Consensus 407 iSFeA~d~~ 415 (444)
T COG1220 407 ISFEAPDMS 415 (444)
T ss_pred hCccCCcCC
Confidence 666666553
No 69
>PF07697 7TMR-HDED: 7TM-HD extracellular; InterPro: IPR011624 This entry represents the extracellular domain of the 7TM-HD (7TM Receptors with HD hydrolase) protein family []. These proteins are known or predicted, to posses metal-dependent phospohydrolase activity.
Probab=22.57 E-value=61 Score=30.14 Aligned_cols=33 Identities=21% Similarity=0.222 Sum_probs=27.5
Q ss_pred CCcHHHHHHHHhhcceEE--eCCCCEEecCCCCcC
Q 037278 239 DWNEQILSEMCDSLKQVL--YTAESYIQQEGDPVS 271 (449)
Q Consensus 239 ~l~~~~l~~L~~~l~~~~--~~~ge~I~~eGd~~~ 271 (449)
..++...++..+...+.. +.+||.|+++|+.++
T Consensus 173 ~~T~~~~~~a~~~V~pv~~~V~~Ge~IV~kGe~VT 207 (222)
T PF07697_consen 173 EATEKAREEALASVSPVRGMVKKGEVIVRKGEIVT 207 (222)
T ss_pred HHHHHHHHHHHhcCCchHhhccCCCEEecCCcEeC
Confidence 456667777888888887 999999999999765
No 70
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=20.69 E-value=2.6e+02 Score=20.55 Aligned_cols=28 Identities=25% Similarity=0.162 Sum_probs=23.5
Q ss_pred CCcchhhhhhhcHHH-HHHHHHHHHcccc
Q 037278 403 SSPSLGATIYASRFA-ATTLRATRRIGTR 430 (449)
Q Consensus 403 ~~~~l~~~~~~sr~a-~~~~~~~~~~~~~ 430 (449)
+..+|+...++||-+ .+|++.|.+.|-.
T Consensus 26 s~~~la~~~~vsr~tvr~al~~L~~~g~i 54 (64)
T PF00392_consen 26 SERELAERYGVSRTTVREALRRLEAEGLI 54 (64)
T ss_dssp -HHHHHHHHTS-HHHHHHHHHHHHHTTSE
T ss_pred CHHHHHHHhccCCcHHHHHHHHHHHCCcE
Confidence 568899999999999 8899999999953
Done!