Query 037278
Match_columns 449
No_of_seqs 568 out of 2374
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 18:04:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037278.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037278hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ev0_A Transcription regulator 99.9 4.8E-23 1.7E-27 191.6 23.5 197 233-443 3-206 (216)
2 3d0s_A Transcriptional regulat 99.9 6.8E-23 2.3E-27 192.5 17.4 199 231-443 8-220 (227)
3 3dv8_A Transcriptional regulat 99.9 1.9E-22 6.5E-27 188.1 19.6 199 231-443 5-212 (220)
4 3dkw_A DNR protein; CRP-FNR, H 99.9 9.6E-23 3.3E-27 191.1 17.4 200 231-444 11-222 (227)
5 3iwz_A CAP-like, catabolite ac 99.9 3.8E-22 1.3E-26 187.3 21.0 198 231-442 13-229 (230)
6 2gau_A Transcriptional regulat 99.9 2E-22 6.8E-27 190.0 18.7 197 233-443 14-223 (232)
7 3e97_A Transcriptional regulat 99.9 2.3E-22 8E-27 189.3 18.3 196 232-443 9-218 (231)
8 3ryp_A Catabolite gene activat 99.9 4.4E-22 1.5E-26 184.3 19.8 195 235-443 2-210 (210)
9 3fx3_A Cyclic nucleotide-bindi 99.9 2.5E-22 8.7E-27 189.8 18.2 198 231-443 13-220 (237)
10 1zyb_A Transcription regulator 99.9 1.9E-22 6.4E-27 190.9 15.9 199 231-443 20-229 (232)
11 3dn7_A Cyclic nucleotide bindi 99.9 4.5E-22 1.5E-26 182.4 17.9 171 230-425 8-193 (194)
12 2oz6_A Virulence factor regula 99.9 1.1E-21 3.7E-26 181.2 19.1 189 240-442 1-206 (207)
13 1o5l_A Transcriptional regulat 99.9 1.7E-21 5.9E-26 181.8 12.9 196 235-444 5-208 (213)
14 3kcc_A Catabolite gene activat 99.9 1.1E-20 3.8E-25 182.2 18.6 191 238-442 55-259 (260)
15 2fmy_A COOA, carbon monoxide o 99.8 8.3E-21 2.8E-25 177.6 15.4 190 232-443 7-211 (220)
16 3e6c_C CPRK, cyclic nucleotide 99.8 1.6E-20 5.4E-25 179.4 15.6 192 234-443 15-220 (250)
17 1ft9_A Carbon monoxide oxidati 99.8 2.5E-20 8.4E-25 174.8 15.7 190 232-443 3-207 (222)
18 3la7_A Global nitrogen regulat 99.8 1.3E-19 4.4E-24 172.7 19.7 191 242-444 30-237 (243)
19 2bgc_A PRFA; bacterial infecti 99.8 5E-19 1.7E-23 167.9 19.2 193 238-443 2-213 (238)
20 3gyd_A CNMP-BD protein, cyclic 99.8 9.3E-18 3.2E-22 153.8 20.2 127 230-366 40-168 (187)
21 3mdp_A Cyclic nucleotide-bindi 99.8 2.4E-18 8.3E-23 148.7 11.8 125 232-366 9-138 (142)
22 3b02_A Transcriptional regulat 99.8 3.8E-18 1.3E-22 156.8 13.4 168 255-443 2-182 (195)
23 2pqq_A Putative transcriptiona 99.8 9.2E-18 3.1E-22 146.1 14.4 119 231-359 7-127 (149)
24 2z69_A DNR protein; beta barre 99.8 1.2E-17 4E-22 146.4 14.6 123 230-362 13-138 (154)
25 2zcw_A TTHA1359, transcription 99.7 8.9E-18 3E-22 155.0 12.9 174 248-443 1-189 (202)
26 3beh_A MLL3241 protein; transm 99.7 3E-19 1E-23 180.2 1.8 112 234-360 233-344 (355)
27 2ptm_A Hyperpolarization-activ 99.7 6.9E-17 2.3E-21 148.8 15.4 120 231-362 73-192 (198)
28 3idb_B CAMP-dependent protein 99.7 4.1E-17 1.4E-21 145.0 12.8 115 230-355 39-155 (161)
29 1wgp_A Probable cyclic nucleot 99.7 1.2E-17 4.1E-22 144.0 7.7 122 232-355 9-134 (137)
30 3ukn_A Novel protein similar t 99.7 7.6E-17 2.6E-21 150.1 12.7 125 233-370 79-205 (212)
31 3bpz_A Potassium/sodium hyperp 99.7 1.3E-16 4.5E-21 147.5 13.3 117 230-359 73-189 (202)
32 3ocp_A PRKG1 protein; serine/t 99.7 2.4E-16 8.1E-21 136.5 13.8 113 231-356 25-137 (139)
33 1vp6_A CNBD, cyclic-nucleotide 99.7 2.1E-16 7.3E-21 136.1 13.2 119 230-363 12-130 (138)
34 4f8a_A Potassium voltage-gated 99.7 6.9E-16 2.3E-20 136.1 14.8 117 231-361 29-148 (160)
35 4ava_A Lysine acetyltransferas 99.7 6E-16 2E-20 153.8 15.7 120 231-361 15-135 (333)
36 3pna_A CAMP-dependent protein 99.7 5.8E-16 2E-20 136.7 13.3 110 232-354 41-150 (154)
37 1o7f_A CAMP-dependent RAP1 gua 99.7 3.9E-16 1.3E-20 162.3 12.6 199 231-444 44-273 (469)
38 2qcs_B CAMP-dependent protein 99.6 1.4E-14 4.8E-19 140.7 14.6 121 231-361 159-282 (291)
39 3of1_A CAMP-dependent protein 99.6 9.7E-15 3.3E-19 137.6 12.9 117 231-360 9-125 (246)
40 3shr_A CGMP-dependent protein 99.6 2.6E-15 9E-20 146.7 8.8 121 231-361 159-282 (299)
41 3shr_A CGMP-dependent protein 99.6 3.3E-14 1.1E-18 138.9 16.1 120 230-362 40-159 (299)
42 3of1_A CAMP-dependent protein 99.6 2E-14 6.7E-19 135.5 13.0 113 231-356 127-240 (246)
43 2d93_A RAP guanine nucleotide 99.6 4.6E-15 1.6E-19 127.6 7.5 107 231-350 18-126 (134)
44 2qcs_B CAMP-dependent protein 99.6 3.1E-14 1E-18 138.3 14.0 120 231-363 41-160 (291)
45 3tnp_B CAMP-dependent protein 99.5 5.6E-14 1.9E-18 144.8 14.3 114 231-355 147-262 (416)
46 4din_B CAMP-dependent protein 99.5 1.5E-14 5.2E-19 147.3 8.8 123 231-363 250-375 (381)
47 4din_B CAMP-dependent protein 99.5 7.1E-14 2.4E-18 142.3 13.5 120 231-363 132-251 (381)
48 3tnp_B CAMP-dependent protein 99.5 3.9E-14 1.3E-18 146.0 11.0 117 232-358 270-394 (416)
49 1o7f_A CAMP-dependent RAP1 gua 99.4 9.8E-13 3.3E-17 136.6 13.1 113 231-356 339-454 (469)
50 4f7z_A RAP guanine nucleotide 99.3 5.9E-12 2E-16 143.0 14.7 112 231-353 44-159 (999)
51 3cf6_E RAP guanine nucleotide 99.3 7.7E-12 2.6E-16 136.7 11.9 110 231-353 34-146 (694)
52 4f7z_A RAP guanine nucleotide 99.2 8.5E-11 2.9E-15 133.5 13.2 107 231-350 339-448 (999)
53 1orq_C Potassium channel; volt 97.8 1.4E-05 4.9E-10 74.6 5.0 51 102-165 37-87 (223)
54 2r9r_B Paddle chimera voltage 97.2 0.00032 1.1E-08 73.8 6.4 49 103-163 238-287 (514)
55 2kyh_A KVAP, voltage-gated pot 95.0 0.051 1.7E-06 47.4 7.1 47 103-162 51-97 (147)
56 1ors_C Potassium channel; volt 94.8 0.054 1.8E-06 46.2 6.5 48 102-162 35-82 (132)
57 3rvy_A ION transport protein; 91.5 0.47 1.6E-05 45.3 8.0 46 102-161 59-105 (285)
58 2kxw_B Sodium channel protein 80.6 1.6 5.4E-05 26.6 3.1 20 368-387 3-22 (27)
59 2l53_B CAM, voltage-gated sodi 79.9 1.8 6.2E-05 27.2 3.2 22 368-389 3-24 (31)
60 3rns_A Cupin 2 conserved barre 79.7 7.4 0.00025 35.6 9.0 68 252-338 39-106 (227)
61 2ozj_A Cupin 2, conserved barr 78.1 11 0.00039 29.7 8.8 66 254-338 42-107 (114)
62 3fjs_A Uncharacterized protein 77.7 11 0.00038 30.2 8.6 66 253-337 39-104 (114)
63 3lwc_A Uncharacterized protein 72.5 26 0.00089 28.5 9.6 45 254-303 44-88 (119)
64 1yfu_A 3-hydroxyanthranilate-3 72.3 11 0.00037 33.4 7.5 58 269-342 54-113 (174)
65 1dgw_A Canavalin; duplicated s 70.0 5.5 0.00019 35.1 5.2 52 252-303 43-94 (178)
66 1yhf_A Hypothetical protein SP 69.2 26 0.00089 27.4 8.8 67 253-338 43-109 (115)
67 3bcw_A Uncharacterized protein 68.4 15 0.00051 30.3 7.2 45 255-303 54-98 (123)
68 1zvf_A 3-hydroxyanthranilate 3 68.4 12 0.00042 33.1 6.9 84 243-342 12-115 (176)
69 4dxw_A Navrh, ION transport pr 67.8 5.3 0.00018 36.4 4.8 49 100-160 38-87 (229)
70 2pfw_A Cupin 2, conserved barr 64.0 39 0.0013 26.4 8.9 67 253-338 37-103 (116)
71 2bnm_A Epoxidase; oxidoreducta 60.8 30 0.001 30.2 8.3 49 254-303 121-173 (198)
72 2qnk_A 3-hydroxyanthranilate 3 60.6 19 0.00065 34.3 7.1 62 267-344 48-110 (286)
73 1o5u_A Novel thermotoga mariti 60.1 61 0.0021 25.4 10.6 65 252-336 33-97 (101)
74 3rns_A Cupin 2 conserved barre 59.7 31 0.0011 31.2 8.4 68 252-338 155-223 (227)
75 3es4_A Uncharacterized protein 58.0 12 0.00041 30.8 4.6 45 255-303 47-91 (116)
76 4e2g_A Cupin 2 conserved barre 55.9 47 0.0016 26.4 8.1 77 252-347 43-123 (126)
77 3h8u_A Uncharacterized conserv 55.1 24 0.00082 28.2 6.1 49 252-303 41-90 (125)
78 3d0j_A Uncharacterized protein 53.4 20 0.00067 30.6 5.3 63 264-341 44-110 (140)
79 2vqa_A SLL1358 protein, MNCA; 53.4 22 0.00075 34.5 6.6 51 253-303 55-107 (361)
80 1j58_A YVRK protein; cupin, de 53.1 20 0.0007 35.2 6.4 52 252-303 81-133 (385)
81 2fqp_A Hypothetical protein BP 53.0 14 0.00047 28.5 4.1 49 253-303 21-70 (97)
82 4axo_A EUTQ, ethanolamine util 50.1 48 0.0016 28.4 7.4 51 269-338 83-133 (151)
83 1j58_A YVRK protein; cupin, de 49.1 29 0.00099 34.0 6.8 52 252-303 259-312 (385)
84 2pyt_A Ethanolamine utilizatio 47.5 56 0.0019 27.1 7.3 44 254-303 61-104 (133)
85 2vqa_A SLL1358 protein, MNCA; 47.5 32 0.0011 33.3 6.7 52 252-303 236-289 (361)
86 2cav_A Protein (canavalin); vi 47.3 19 0.00065 36.7 5.1 52 252-303 88-139 (445)
87 2q1z_B Anti-sigma factor CHRR, 47.2 42 0.0014 29.9 6.9 65 251-338 126-192 (195)
88 2q30_A Uncharacterized protein 47.0 90 0.0031 23.7 8.2 67 254-338 37-105 (110)
89 2gu9_A Tetracenomycin polyketi 45.6 41 0.0014 25.9 5.9 47 253-303 24-73 (113)
90 2d5f_A Glycinin A3B4 subunit; 45.4 38 0.0013 34.9 7.1 58 246-303 363-423 (493)
91 1fxz_A Glycinin G1; proglycini 45.1 32 0.0011 35.4 6.4 52 252-303 340-394 (476)
92 2i45_A Hypothetical protein; n 44.5 22 0.00076 27.6 4.2 68 258-343 36-103 (107)
93 1v70_A Probable antibiotics sy 43.8 45 0.0015 25.0 5.8 47 253-303 31-78 (105)
94 1fi2_A Oxalate oxidase, germin 43.7 45 0.0015 29.6 6.6 52 252-303 74-130 (201)
95 2ea7_A 7S globulin-1; beta bar 43.7 24 0.00082 35.8 5.2 53 251-303 62-114 (434)
96 1uij_A Beta subunit of beta co 43.4 23 0.00079 35.7 5.0 52 252-303 51-102 (416)
97 3c3v_A Arachin ARAH3 isoform; 43.4 35 0.0012 35.3 6.4 58 246-303 368-428 (510)
98 1sfn_A Conserved hypothetical 43.3 36 0.0012 31.3 6.0 49 251-303 166-215 (246)
99 3d82_A Cupin 2, conserved barr 43.1 71 0.0024 23.9 6.9 53 268-339 48-100 (102)
100 3fz3_A Prunin; TREE NUT allerg 42.6 45 0.0016 34.6 7.1 59 245-303 389-450 (531)
101 1sfn_A Conserved hypothetical 42.2 1.2E+02 0.0041 27.7 9.4 64 254-338 54-117 (246)
102 2o1q_A Putative acetyl/propion 41.9 29 0.001 29.2 4.7 48 252-303 46-95 (145)
103 3es1_A Cupin 2, conserved barr 40.8 33 0.0011 30.2 5.0 48 252-302 81-128 (172)
104 2ypj_A Eccel5A, endoglucanase 38.9 3.5 0.00012 33.7 -1.5 36 128-163 99-135 (155)
105 4ba6_A Endoglucanase CEL5A; ca 38.9 3.5 0.00012 33.3 -1.5 36 128-163 80-116 (144)
106 1sq4_A GLXB, glyoxylate-induce 38.9 47 0.0016 31.2 6.1 49 251-303 192-241 (278)
107 3ibm_A Cupin 2, conserved barr 38.7 53 0.0018 28.2 6.0 47 253-303 59-105 (167)
108 1lr5_A Auxin binding protein 1 38.3 34 0.0012 29.0 4.7 50 253-303 44-99 (163)
109 4e2q_A Ureidoglycine aminohydr 37.0 69 0.0024 30.1 6.9 69 253-339 73-141 (266)
110 2phl_A Phaseolin; plant SEED s 34.9 38 0.0013 33.9 4.9 50 252-301 54-103 (397)
111 3l2h_A Putative sugar phosphat 34.5 40 0.0014 28.4 4.5 46 253-302 49-96 (162)
112 1x82_A Glucose-6-phosphate iso 34.0 51 0.0018 29.0 5.2 51 253-303 70-130 (190)
113 3i7d_A Sugar phosphate isomera 33.8 42 0.0014 28.7 4.5 47 253-303 46-94 (163)
114 2e9q_A 11S globulin subunit be 33.8 51 0.0017 33.6 5.8 58 246-303 318-378 (459)
115 3lag_A Uncharacterized protein 33.8 14 0.00047 29.1 1.2 49 252-302 19-69 (98)
116 1y9q_A Transcriptional regulat 32.8 81 0.0028 27.2 6.4 45 255-303 109-155 (192)
117 3kgz_A Cupin 2 conserved barre 32.6 49 0.0017 28.2 4.7 46 254-303 48-93 (156)
118 3jzv_A Uncharacterized protein 32.1 46 0.0016 28.7 4.5 46 254-303 57-102 (166)
119 1o4t_A Putative oxalate decarb 31.6 61 0.0021 26.4 5.0 46 254-303 61-107 (133)
120 3bu7_A Gentisate 1,2-dioxygena 31.6 34 0.0012 34.2 4.0 48 253-303 126-173 (394)
121 2d40_A Z3393, putative gentisa 31.5 1.5E+02 0.0051 28.8 8.6 74 254-346 272-345 (354)
122 4b29_A Dimethylsulfoniopropion 31.5 73 0.0025 29.1 5.8 45 255-302 137-181 (217)
123 2opk_A Hypothetical protein; p 31.3 58 0.002 25.8 4.7 34 268-303 51-84 (112)
124 3ebr_A Uncharacterized RMLC-li 31.2 67 0.0023 27.6 5.3 66 252-338 44-113 (159)
125 3ksc_A LEGA class, prolegumin; 30.7 56 0.0019 33.7 5.5 53 251-303 359-414 (496)
126 3qac_A 11S globulin SEED stora 30.4 64 0.0022 33.0 5.8 53 251-303 324-379 (465)
127 3myx_A Uncharacterized protein 30.3 55 0.0019 30.3 4.9 31 270-303 186-216 (238)
128 3s7i_A Allergen ARA H 1, clone 30.2 54 0.0018 33.0 5.2 52 252-303 46-97 (418)
129 4i4a_A Similar to unknown prot 29.8 2E+02 0.0069 22.5 9.7 77 254-349 38-118 (128)
130 2phl_A Phaseolin; plant SEED s 29.6 1.3E+02 0.0043 30.0 7.8 72 252-338 241-321 (397)
131 3kgl_A Cruciferin; 11S SEED gl 29.6 61 0.0021 33.2 5.5 56 248-303 321-379 (466)
132 2f4p_A Hypothetical protein TM 29.5 2.3E+02 0.008 23.3 8.5 48 253-303 51-98 (147)
133 2b8m_A Hypothetical protein MJ 29.4 66 0.0023 25.2 4.7 46 255-303 32-77 (117)
134 2vpv_A Protein MIF2, MIF2P; nu 28.0 53 0.0018 28.7 4.1 32 268-303 108-139 (166)
135 3cew_A Uncharacterized cupin p 27.6 71 0.0024 25.4 4.7 47 253-303 29-77 (125)
136 1juh_A Quercetin 2,3-dioxygena 27.6 1E+02 0.0034 29.9 6.6 70 260-347 262-334 (350)
137 3bu7_A Gentisate 1,2-dioxygena 27.4 54 0.0018 32.7 4.6 77 253-348 297-376 (394)
138 1vj2_A Novel manganese-contain 27.4 68 0.0023 25.7 4.5 46 254-303 52-97 (126)
139 1sef_A Conserved hypothetical 26.6 95 0.0032 28.8 6.0 48 252-303 184-232 (274)
140 1juh_A Quercetin 2,3-dioxygena 26.6 84 0.0029 30.5 5.8 36 268-303 69-105 (350)
141 4e2q_A Ureidoglycine aminohydr 24.9 1.1E+02 0.0038 28.7 6.0 51 249-303 185-236 (266)
142 3nw4_A Gentisate 1,2-dioxygena 24.6 1.7E+02 0.0057 28.9 7.5 75 255-348 284-358 (368)
143 3ht1_A REMF protein; cupin fol 24.1 68 0.0023 26.0 4.0 32 270-303 59-90 (145)
144 1vr3_A Acireductone dioxygenas 23.8 1.1E+02 0.0039 27.2 5.5 34 270-303 104-138 (191)
145 4afm_A Endoglucanase CEL5A; hy 23.7 24 0.00083 28.1 0.9 35 129-163 78-114 (134)
146 2oa2_A BH2720 protein; 1017534 23.6 1.5E+02 0.0051 24.4 6.1 49 254-302 47-98 (148)
147 3h7j_A Bacilysin biosynthesis 23.6 1.9E+02 0.0063 26.2 7.3 46 254-303 149-195 (243)
148 3h7j_A Bacilysin biosynthesis 23.5 1E+02 0.0035 27.9 5.5 47 252-302 36-82 (243)
149 4ham_A LMO2241 protein; struct 23.4 57 0.002 26.8 3.3 46 395-441 33-82 (134)
150 2heo_A Z-DNA binding protein 1 23.1 66 0.0023 23.1 3.2 28 403-430 27-55 (67)
151 2qnk_A 3-hydroxyanthranilate 3 22.0 2.8E+02 0.0095 26.3 8.0 69 252-340 209-277 (286)
152 1rc6_A Hypothetical protein YL 21.3 92 0.0032 28.6 4.7 48 252-303 181-229 (261)
153 3rkx_A Biotin-[acetyl-COA-carb 21.2 80 0.0027 30.4 4.3 27 403-429 21-48 (323)
154 2o8q_A Hypothetical protein; c 21.0 1.2E+02 0.0042 24.2 5.0 31 270-303 64-94 (134)
155 1rc6_A Hypothetical protein YL 20.5 81 0.0028 29.0 4.1 46 254-303 63-110 (261)
156 1y3t_A Hypothetical protein YX 20.2 1.3E+02 0.0046 28.2 5.8 46 254-303 50-96 (337)
No 1
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.91 E-value=4.8e-23 Score=191.62 Aligned_cols=197 Identities=17% Similarity=0.178 Sum_probs=162.9
Q ss_pred cCCCCCCCcHHHHHHHHhhcceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEE--EecCCCeecHHhHHHh
Q 037278 233 HVPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGV--YLQAGDFFGEELLMWA 310 (449)
Q Consensus 233 ~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~--~l~~Gd~fGE~~l~~~ 310 (449)
++|+|.++++++++.+...++.+.|++|++|+++||+++++|+|.+|.++++..+++|++.+ .+++|++||+.++
T Consensus 3 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~--- 79 (216)
T 4ev0_A 3 GSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERTLALLGPGELFGEMSL--- 79 (216)
T ss_dssp -CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCEEEEEEECTTCEECHHHH---
T ss_pred CChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEeehhh---
Confidence 47999999999999999999999999999999999999999999999999998888999877 9999999999887
Q ss_pred hccCCCCCCCCCcceEEEEecceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHH
Q 037278 311 LETQSSSENLPISTRTVRTLTEVEGLALMADDLKFAASRFRQMNGEQLEHILRFYAPEWRTWAASFIQAAWRRYIERKLK 390 (449)
Q Consensus 311 l~~~~~~~~~p~s~~tv~Alt~t~l~~L~~~df~~ll~~~~~l~~~~l~~~~r~~s~~~~~~~~~~iq~a~~r~~~r~~~ 390 (449)
+.+.++ +++++|+++|+++.+++++|.++++++|.+....++...+. .+................|...
T Consensus 80 ~~~~~~-------~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~Rl~~ 148 (216)
T 4ev0_A 80 LDEGER-------SASAVAVEDTELLALFREDYLALIRRLPLVAHNLAALLARR----LREADLELDLLSFEEARNRVAY 148 (216)
T ss_dssp HHCCBC-------SSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCc-------ceEEEEcCCEEEEEEcHHHHHHHHHHCcHHHHHHHHHHHHH----HHHHHHHHHHHhcCCHHHHHHH
Confidence 676665 89999999999999999999999999999887766665543 3333333333333334455555
Q ss_pred HHHhhhcCCCCC----CCcchhhhhhhcHHH-HHHHHHHHHccccccCCccccccCcc
Q 037278 391 ESMRGEINRLPD----SSPSLGATIYASRFA-ATTLRATRRIGTRAFTGESSCHDNSE 443 (449)
Q Consensus 391 ~~~~~~~er~~~----~~~~l~~~~~~sr~a-~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (449)
.+..-+++...- ++.+||..+|++|.+ +++|+.|+++|-.+..+.++...|++
T Consensus 149 ~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i~d~~ 206 (216)
T 4ev0_A 149 ALLKLLRQGLGPLFQIRHHELAALAGTSRETVSRVLHALAEEGVVRLGPGTVEVREAA 206 (216)
T ss_dssp HHHHHHHTTCCSEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTEEEESCHH
T ss_pred HHHHHhhcCCccCCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecCCEEEEeCHH
Confidence 554443332111 899999999999999 99999999999888888899998876
No 2
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.90 E-value=6.8e-23 Score=192.50 Aligned_cols=199 Identities=17% Similarity=0.219 Sum_probs=160.6
Q ss_pred hccCCCCCCCcHHHHHHHHhhcceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEE--EecCCCeecHHhHH
Q 037278 231 AGHVPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGV--YLQAGDFFGEELLM 308 (449)
Q Consensus 231 ~s~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~--~l~~Gd~fGE~~l~ 308 (449)
...+|+|.++++++++.+...++.+.|++|++|+++||+++.+|||.+|.++++..+++|++.+ .+.+|++||+.++
T Consensus 8 l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~- 86 (227)
T 3d0s_A 8 LARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGELSI- 86 (227)
T ss_dssp HTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCHHH-
T ss_pred HhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEEecCCCEEeeHHH-
Confidence 3568999999999999999999999999999999999999999999999999998888999877 9999999999988
Q ss_pred HhhccCCCCCCCCCcceEEEEecceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHH
Q 037278 309 WALETQSSSENLPISTRTVRTLTEVEGLALMADDLKFAASRFRQMNGEQLEHILRFYAPEWRTWAASFIQAAWRRYIERK 388 (449)
Q Consensus 309 ~~l~~~~~~~~~p~s~~tv~Alt~t~l~~L~~~df~~ll~~~~~l~~~~l~~~~r~~s~~~~~~~~~~iq~a~~r~~~r~ 388 (449)
+.+.|+ +++++|+++|+++.|++++|.++++++|.+....++...+.+....+......... ...|.
T Consensus 87 --~~~~~~-------~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~l~~~~----~~~Rl 153 (227)
T 3d0s_A 87 --FDPGPR-------TSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVLARRLRRTNNNLADLIFTD----VPGRV 153 (227)
T ss_dssp --HSCSCC-------SSEEEESSCEEEEEEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHSC----HHHHH
T ss_pred --cCCCCc-------eeEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHhcCC----HHHHH
Confidence 676665 89999999999999999999999999999887776665543322222222222223 33333
Q ss_pred HHHHHh---hhcCCC------C--CCCcchhhhhhhcHHH-HHHHHHHHHccccccCCccccccCcc
Q 037278 389 LKESMR---GEINRL------P--DSSPSLGATIYASRFA-ATTLRATRRIGTRAFTGESSCHDNSE 443 (449)
Q Consensus 389 ~~~~~~---~~~er~------~--~~~~~l~~~~~~sr~a-~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (449)
...+.. ..+... . -++.+||..+|+||.+ +++|+.|++.|-....+.++...|++
T Consensus 154 ~~~L~~l~~~~~~~~~~~~~i~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i~d~~ 220 (227)
T 3d0s_A 154 AKQLLQLAQRFGTQEGGALRVTHDLTQEEIAQLVGASRETVNKALADFAHRGWIRLEGKSVLISDSE 220 (227)
T ss_dssp HHHHHHHHHHHEEEETTEEEEECCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTEEEESCHH
T ss_pred HHHHHHHHHHhCCcCCCceEEcCCCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEecCCEEEEcCHH
Confidence 333332 222211 1 1889999999999999 99999999999887888889988875
No 3
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.90 E-value=1.9e-22 Score=188.11 Aligned_cols=199 Identities=13% Similarity=0.080 Sum_probs=161.8
Q ss_pred hccCCCCCCCcHHHHHHHHhhcceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEE--EecCCCe--ecHHh
Q 037278 231 AGHVPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGV--YLQAGDF--FGEEL 306 (449)
Q Consensus 231 ~s~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~--~l~~Gd~--fGE~~ 306 (449)
..++|+|.++++++++.+...++.+.|++|++|+++||+++++|||.+|.++++..+++|++.+ .++|||+ ||+.+
T Consensus 5 l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~~~g~~~ 84 (220)
T 3dv8_A 5 ENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGREITLYRLFDMDMCLLSASC 84 (220)
T ss_dssp CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESGGGGG
T ss_pred HHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECCCCCEEEEEecCCCCeeehhHHH
Confidence 3568999999999999999999999999999999999999999999999999998889999887 9999999 78888
Q ss_pred HHHhhccCCCCCCCCCcceEEEEecceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHH
Q 037278 307 LMWALETQSSSENLPISTRTVRTLTEVEGLALMADDLKFAASRFRQMNGEQLEHILRFYAPEWRTWAASFIQAAWRRYIE 386 (449)
Q Consensus 307 l~~~l~~~~~~~~~p~s~~tv~Alt~t~l~~L~~~df~~ll~~~~~l~~~~l~~~~r~~s~~~~~~~~~~iq~a~~r~~~ 386 (449)
+ +.+.|+ +.+++|+++|+++.|++++|.+++.++|.+....++...+.+. .......+........
T Consensus 85 ~---~~~~~~-------~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~----~~~~~~~~~~~~~~~~ 150 (220)
T 3dv8_A 85 I---MRSIQF-------EVTIEAEKDTDLWIIPAEIYKGIMKDSAPVANYTNELMATRFS----DVMWLIEQIMWKSLDK 150 (220)
T ss_dssp G---CTTCCC-------CCEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHH----HHHHHHHHHHHSCHHH
T ss_pred H---hCCCCC-------ceEEEEeeeeEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHH----HHHHHHHHHhcCCHHH
Confidence 7 676665 8999999999999999999999999999988766665544332 2222222222333344
Q ss_pred HHHHHHHhhhcCCC----CCCCcchhhhhhhcHHH-HHHHHHHHHccccccCCccccccCcc
Q 037278 387 RKLKESMRGEINRL----PDSSPSLGATIYASRFA-ATTLRATRRIGTRAFTGESSCHDNSE 443 (449)
Q Consensus 387 r~~~~~~~~~~er~----~~~~~~l~~~~~~sr~a-~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (449)
|....+...++... +-++.+||..+|+||.+ +++|+.|+++|-.+..+.++..+|++
T Consensus 151 Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i~d~~ 212 (220)
T 3dv8_A 151 RVASFLLEETSIEGTNELKITHETIANHLGSHREVITRMLRYFQVEGLVKLSRGKITILDSK 212 (220)
T ss_dssp HHHHHHHHHHHHHTSSEECCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEESCHH
T ss_pred HHHHHHHHhhhhcCCceecCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeCCCEEEEeCHH
Confidence 44444444333211 11899999999999999 99999999999888888899998875
No 4
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.89 E-value=9.6e-23 Score=191.05 Aligned_cols=200 Identities=9% Similarity=0.103 Sum_probs=164.5
Q ss_pred hccCCCCCCCcHHHHHHHHhhcceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEE--EecCCCeecHHhHH
Q 037278 231 AGHVPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGV--YLQAGDFFGEELLM 308 (449)
Q Consensus 231 ~s~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~--~l~~Gd~fGE~~l~ 308 (449)
...+|+|.++++++++.+...++.+.|++|++|+++||+++++|+|.+|.++++..+++|++.+ .++||++||+.++
T Consensus 11 l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~- 89 (227)
T 3dkw_A 11 LQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEAMM- 89 (227)
T ss_dssp HTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCCBCCCEECTTEEESCTTT-
T ss_pred HhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeHHh-
Confidence 3568999999999999999999999999999999999999999999999999997778898877 9999999999988
Q ss_pred HhhccCC-CCCCCCCcceEEEEecceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHH
Q 037278 309 WALETQS-SSENLPISTRTVRTLTEVEGLALMADDLKFAASRFRQMNGEQLEHILRFYAPEWRTWAASFIQAAWRRYIER 387 (449)
Q Consensus 309 ~~l~~~~-~~~~~p~s~~tv~Alt~t~l~~L~~~df~~ll~~~~~l~~~~l~~~~r~~s~~~~~~~~~~iq~a~~r~~~r 387 (449)
+.+.| + +++++|+++|+++.+++++|.++++++|.+....++...+.. +................|
T Consensus 90 --~~~~~~~-------~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l----~~~~~~~~~~~~~~~~~R 156 (227)
T 3dkw_A 90 --FMDTPNY-------VATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLSTRL----HQRIDEIETLSLKNATHR 156 (227)
T ss_dssp --TTTCSBC-------SSCEEESSCCEEEEEESHHHHHHHSSCTHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred --cCCCCCC-------ceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHH----HHHHHHHHHHhcCCHHHH
Confidence 66666 4 899999999999999999999999999998877666655433 333333333333334455
Q ss_pred HHHHHHhhhcCC------CCC--CCcchhhhhhhcHHH-HHHHHHHHHccccccCCccccccCccc
Q 037278 388 KLKESMRGEINR------LPD--SSPSLGATIYASRFA-ATTLRATRRIGTRAFTGESSCHDNSEV 444 (449)
Q Consensus 388 ~~~~~~~~~~er------~~~--~~~~l~~~~~~sr~a-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (449)
....+...+.+. ... ++.+||..+|+||.+ +++++.|++.|-.+..+.++..+|++-
T Consensus 157 l~~~L~~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i~d~~~ 222 (227)
T 3dkw_A 157 VVRYLLTLAAHAPGENCRVEIPVAKQLVAGHLSIQPETFSRIMHRLGDEGIIHLDGREISILDRER 222 (227)
T ss_dssp HHHHHHHHHCSSSSSCCCCCCCSCTHHHHHHTTSCHHHHHHHHHHHHHHTSEEESSSCEEESCSTT
T ss_pred HHHHHHHhhhhcCCCCeEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHCCcEEecCCEEEEeCHHH
Confidence 555554444331 111 899999999999999 999999999998888899999998874
No 5
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.89 E-value=3.8e-22 Score=187.32 Aligned_cols=198 Identities=14% Similarity=0.158 Sum_probs=156.6
Q ss_pred hccCCCCCCCcHHHHHHHHhhcceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEE--EecCCCeecHHhHH
Q 037278 231 AGHVPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGV--YLQAGDFFGEELLM 308 (449)
Q Consensus 231 ~s~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~--~l~~Gd~fGE~~l~ 308 (449)
....++|.++++++++.+...++.+.|++|++|+++||+++++|+|.+|.++++..+++|++.+ ++.||++||+.++
T Consensus 13 lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~- 91 (230)
T 3iwz_A 13 VRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELVLGYFGSGEFVGEMGL- 91 (230)
T ss_dssp ---------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCGGG-
T ss_pred hhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEEehhh-
Confidence 3458999999999999999999999999999999999999999999999999998888999977 9999999999998
Q ss_pred HhhccC-CCCCCCCCcceEEEEecceEEEEEcHHHHHHHHHHc-----HHHHHHHHHHHHHhhchhHHHHHHHHHHHHHH
Q 037278 309 WALETQ-SSSENLPISTRTVRTLTEVEGLALMADDLKFAASRF-----RQMNGEQLEHILRFYAPEWRTWAASFIQAAWR 382 (449)
Q Consensus 309 ~~l~~~-~~~~~~p~s~~tv~Alt~t~l~~L~~~df~~ll~~~-----~~l~~~~l~~~~r~~s~~~~~~~~~~iq~a~~ 382 (449)
+.+. |+ +++++|+++|+++.|++++|.++++++ |.+....++...+ ..+............
T Consensus 92 --~~~~~~~-------~~~~~a~~~~~v~~i~~~~~~~l~~~~~~~~~p~~~~~~~~~l~~----~l~~~~~~~~~l~~~ 158 (230)
T 3iwz_A 92 --FIESDTR-------EVILRTRTQCELAEISYERLQQLFQTSLSPDAPRILYAIGVQLSK----RLLDTTRKASRLAFL 158 (230)
T ss_dssp --TSCCSBC-------CSEEEESSCEEEEEEEHHHHHHHHHTTTGGGHHHHHHHHHHHHHH----HHHHHHHHHHHHHHC
T ss_pred --hcCCCCc-------eeEEEEcCcEEEEEEeHHHHHHHHHHhcccCCcHHHHHHHHHHHH----HHHHHHHHHHHHhcC
Confidence 5543 34 899999999999999999999999999 8887766665544 344444444444444
Q ss_pred HHHHHHHHHHHhhhcCCC----CC------CCcchhhhhhhcHHH-HHHHHHHHHccccccCCccccccCc
Q 037278 383 RYIERKLKESMRGEINRL----PD------SSPSLGATIYASRFA-ATTLRATRRIGTRAFTGESSCHDNS 442 (449)
Q Consensus 383 r~~~r~~~~~~~~~~er~----~~------~~~~l~~~~~~sr~a-~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (449)
....|....+..-+++.. ++ ++.+||..+|++|.+ +++|+.|+++|-.+..+.+|..+|+
T Consensus 159 ~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~lt~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i~d~ 229 (230)
T 3iwz_A 159 DVTDRIVRTLHDLSKEPEAMSHPQGTQLRVSRQELARLVGCSREMAGRVLKKLQADGLLHARGKTVVLYGT 229 (230)
T ss_dssp CHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEEEC-
T ss_pred CHHHHHHHHHHHHHHhhCCCCCCCceecCCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEECCCEEEEeeC
Confidence 455566655555443321 12 899999999999999 9999999999998888899988886
No 6
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.89 E-value=2e-22 Score=189.95 Aligned_cols=197 Identities=14% Similarity=0.094 Sum_probs=155.2
Q ss_pred cCCCCCCCcHHHHHHHHhhcceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEE--EecCCCeecHHhHHHh
Q 037278 233 HVPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGV--YLQAGDFFGEELLMWA 310 (449)
Q Consensus 233 ~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~--~l~~Gd~fGE~~l~~~ 310 (449)
.+|+|.++++++++.+...++.+.|++|++|+++||+++.+|+|.+|.++++..+++|++.+ .+.||++||+.++
T Consensus 14 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~--- 90 (232)
T 2gau_A 14 LRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHISRIVKPGQFFGMRPY--- 90 (232)
T ss_dssp SHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCEEEEECTTCEESHHHH---
T ss_pred ccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEeCCCCEeeeehh---
Confidence 47899999999999999999999999999999999999999999999999997778888876 9999999999988
Q ss_pred hccCCCCCCCCCcceEEEEecceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHH
Q 037278 311 LETQSSSENLPISTRTVRTLTEVEGLALMADDLKFAASRFRQMNGEQLEHILRFYAPEWRTWAASFIQAAWRRYIERKLK 390 (449)
Q Consensus 311 l~~~~~~~~~p~s~~tv~Alt~t~l~~L~~~df~~ll~~~~~l~~~~l~~~~r~~s~~~~~~~~~~iq~a~~r~~~r~~~ 390 (449)
+.+.|+ +++++|+++|+++.|++++|.++++++|.+....++...+.+....+......... ...|...
T Consensus 91 ~~~~~~-------~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~l~~~~----~~~Rl~~ 159 (232)
T 2gau_A 91 FAEETC-------SSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKALAKELGYAERRTVTLTQKH----VRGRLAE 159 (232)
T ss_dssp HHTSCC-------SSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHSC----HHHHHHH
T ss_pred hCCCCc-------ceEEEEecceEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----HHHHHHH
Confidence 666665 89999999999999999999999999999887776665553332222222222223 3334433
Q ss_pred HHHh---hhcC----C-CC-C-CCcchhhhhhhcHHH-HHHHHHHHHccccccCCccccccCcc
Q 037278 391 ESMR---GEIN----R-LP-D-SSPSLGATIYASRFA-ATTLRATRRIGTRAFTGESSCHDNSE 443 (449)
Q Consensus 391 ~~~~---~~~e----r-~~-~-~~~~l~~~~~~sr~a-~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (449)
.++. ..+. . .. . ++.+||..+|+||.+ +++|+.|+++|-.+..+.++..+|++
T Consensus 160 ~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i~d~~ 223 (232)
T 2gau_A 160 TLLILKENFGFENDGATLSIYLSREELATLSNMTVSNAIRTLSTFVSERMLALDGKRIKIIDCD 223 (232)
T ss_dssp HHHHHHHHHCBCTTSSBBSCCCCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEETTEEEESCHH
T ss_pred HHHHHHHHcCCCCCCcEEEcccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeeCCCEEEEeCHH
Confidence 3322 2221 1 11 1 899999999999999 99999999999887888889998875
No 7
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.89 E-value=2.3e-22 Score=189.33 Aligned_cols=196 Identities=15% Similarity=0.134 Sum_probs=158.4
Q ss_pred ccCCCCCCCcHHHHHHHHhhcceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEE--EecCCCeecHHhHHH
Q 037278 232 GHVPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGV--YLQAGDFFGEELLMW 309 (449)
Q Consensus 232 s~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~--~l~~Gd~fGE~~l~~ 309 (449)
..+|+|.++++++++.++..++.+.|++|++|+++||+++.+|+|.+|.++++..+++|++.+ .+.+|++||+.++
T Consensus 9 ~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~-- 86 (231)
T 3e97_A 9 KRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRERVLGDIYAPGVVGETAV-- 86 (231)
T ss_dssp HTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CEEEEEEEESSEEESTTTT--
T ss_pred hcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECCCCceEEEEecCCCCEEeeHHH--
Confidence 458999999999999999999999999999999999999999999999999998888999877 9999999999988
Q ss_pred hhccCCCCCCCCCcceEEEEecceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHH-HHH
Q 037278 310 ALETQSSSENLPISTRTVRTLTEVEGLALMADDLKFAASRFRQMNGEQLEHILRFYAPEWRTWAASFIQAAWRRYI-ERK 388 (449)
Q Consensus 310 ~l~~~~~~~~~p~s~~tv~Alt~t~l~~L~~~df~~ll~~~~~l~~~~l~~~~r~~s~~~~~~~~~~iq~a~~r~~-~r~ 388 (449)
+.+.|+ +++++|+++|+++.|++++|.++++++|.+....++...+.+....+... ...... .|.
T Consensus 87 -~~~~~~-------~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~------~~~~~~~~Rl 152 (231)
T 3e97_A 87 -LAHQER-------SASVRALTPVRTLMLHREHFELILRRHPRVLWNLAEMLARRVTFLNDELI------AFGQNTEAAL 152 (231)
T ss_dssp -TCCCCC-------CEEEEESSCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH------HHHHCHHHHH
T ss_pred -hCCCCc-------eEEEEECCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH------HhccChHHHH
Confidence 676665 89999999999999999999999999999887766665543322222111 222223 444
Q ss_pred HHHHHhhhcC--------CC--CCCCcchhhhhhhcHHH-HHHHHHHHHccccccCCccccccCcc
Q 037278 389 LKESMRGEIN--------RL--PDSSPSLGATIYASRFA-ATTLRATRRIGTRAFTGESSCHDNSE 443 (449)
Q Consensus 389 ~~~~~~~~~e--------r~--~~~~~~l~~~~~~sr~a-~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (449)
...+...++. .. +-++.+||..+|+||.+ +++|+.|++.|-.+..+.++..+|++
T Consensus 153 ~~~L~~~~~~~~~~~~~~~~~~~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i~d~~ 218 (231)
T 3e97_A 153 THVFANLYRQRLAAGVPQPEVLPLGTQDIMARTSSSRETVSRVLKRLEAHNILEVSPRSVTLLDLA 218 (231)
T ss_dssp HHHHHHHHHHHHHHTCSSTTEECCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSSCEEESCHH
T ss_pred HHHHHHHHHhcCCCCCCceEecCCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEecCCEEEEeCHH
Confidence 4444333321 11 11899999999999999 99999999999888889999998876
No 8
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.89 E-value=4.4e-22 Score=184.32 Aligned_cols=195 Identities=15% Similarity=0.177 Sum_probs=156.3
Q ss_pred CCCCCCcHHHHHHHHhhcceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEE--EecCCCeecHHhHHHhhc
Q 037278 235 PMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGV--YLQAGDFFGEELLMWALE 312 (449)
Q Consensus 235 ~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~--~l~~Gd~fGE~~l~~~l~ 312 (449)
++++.+++++++.+...++.+.|++|++|+++||+++++|+|.+|.++++..+++|++.+ .+.||++||+.++ +.
T Consensus 2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~---~~ 78 (210)
T 3ryp_A 2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGL---FE 78 (210)
T ss_dssp -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTCCEEEEEEEETTCEESCTTT---TS
T ss_pred cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeHHH---hc
Confidence 567789999999999999999999999999999999999999999999998888999877 9999999999998 56
Q ss_pred cC-CCCCCCCCcceEEEEecceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHH
Q 037278 313 TQ-SSSENLPISTRTVRTLTEVEGLALMADDLKFAASRFRQMNGEQLEHILRFYAPEWRTWAASFIQAAWRRYIERKLKE 391 (449)
Q Consensus 313 ~~-~~~~~~p~s~~tv~Alt~t~l~~L~~~df~~ll~~~~~l~~~~l~~~~r~~s~~~~~~~~~~iq~a~~r~~~r~~~~ 391 (449)
+. ++ +++++|+++|+++.+++++|.++++++|.+....++...+ ..+................|....
T Consensus 79 ~~~~~-------~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~----~l~~~~~~~~~~~~~~~~~Rl~~~ 147 (210)
T 3ryp_A 79 EGQER-------SAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMAR----RLQVTSEKVGNLAFLDVTGRIAQT 147 (210)
T ss_dssp TTCBC-------SSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHH----HHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CCCCc-------eEEEEECCcEEEEEEcHHHHHHHHHHChHHHHHHHHHHHH----HHHHHHHHHHHHhhCCHHHHHHHH
Confidence 55 44 8999999999999999999999999999988766665544 333333344444444455566655
Q ss_pred HHhhhcCCC----CC------CCcchhhhhhhcHHH-HHHHHHHHHccccccCCccccccCcc
Q 037278 392 SMRGEINRL----PD------SSPSLGATIYASRFA-ATTLRATRRIGTRAFTGESSCHDNSE 443 (449)
Q Consensus 392 ~~~~~~er~----~~------~~~~l~~~~~~sr~a-~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (449)
+..-+++.. ++ ++.+||..+|+||.+ +++|+.|+++|-.+..+.+|..+|.|
T Consensus 148 L~~l~~~~~~~~~~~~~~~~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i~d~d 210 (210)
T 3ryp_A 148 LLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR 210 (210)
T ss_dssp HHHHTTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEEEC--
T ss_pred HHHHHHhcCcCCCCCceEeccCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEeCCCEEEEEecC
Confidence 555444321 12 889999999999999 99999999999888888888888764
No 9
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.89 E-value=2.5e-22 Score=189.82 Aligned_cols=198 Identities=10% Similarity=0.056 Sum_probs=161.3
Q ss_pred hccCCCCCCCcHHHHHHHHhhcceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEE--EecCCCeecHHhHH
Q 037278 231 AGHVPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGV--YLQAGDFFGEELLM 308 (449)
Q Consensus 231 ~s~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~--~l~~Gd~fGE~~l~ 308 (449)
...+|+|.++++++++.+...++.+.|++|++|+++||+++++|||.+|.|+++..+++|++.+ .+++|++||+.++
T Consensus 13 l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~~~~- 91 (237)
T 3fx3_A 13 ARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAVVSVFTRGESFGEAVA- 91 (237)
T ss_dssp HTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEEEEEEEETTEEECHHHH-
T ss_pred HhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEeCCCCEechHHH-
Confidence 4568999999999999999999999999999999999999999999999999998888999877 9999999999998
Q ss_pred HhhccCCCCCCCCCcceEEEEecceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHH
Q 037278 309 WALETQSSSENLPISTRTVRTLTEVEGLALMADDLKFAASRFRQMNGEQLEHILRFYAPEWRTWAASFIQAAWRRYIERK 388 (449)
Q Consensus 309 ~~l~~~~~~~~~p~s~~tv~Alt~t~l~~L~~~df~~ll~~~~~l~~~~l~~~~r~~s~~~~~~~~~~iq~a~~r~~~r~ 388 (449)
+.+.|+ +++++|+++|+++.|++++|.++++++|.+....++...+. .+................|.
T Consensus 92 --~~~~~~-------~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~----l~~~~~~~~~l~~~~~~~Rl 158 (237)
T 3fx3_A 92 --LRNTPY-------PVSAEAVTPCEVMHIPSPVFVSLMRRDPEICISILATTFGH----LHSLVAQLEQLKAQTGAQRV 158 (237)
T ss_dssp --HHTCCC-------SSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH----HHHHHHHHHHCCCCCHHHHH
T ss_pred --hcCCCC-------CceEEECCceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHH----HHHHHHHHHHHhcCCHHHHH
Confidence 566665 89999999999999999999999999999887766665543 23333333222223334455
Q ss_pred HHHHHhhhcCCCC-------CCCcchhhhhhhcHHH-HHHHHHHHHccccccCCccccccCcc
Q 037278 389 LKESMRGEINRLP-------DSSPSLGATIYASRFA-ATTLRATRRIGTRAFTGESSCHDNSE 443 (449)
Q Consensus 389 ~~~~~~~~~er~~-------~~~~~l~~~~~~sr~a-~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (449)
...+..-+++..+ -|+.+||..+|++|.+ +++|+.|++.|- ...+.+|...|++
T Consensus 159 ~~~L~~~~~~~~~~~~~~l~~t~~~iA~~lg~sr~tvsR~l~~L~~~gi-~~~~~~i~I~d~~ 220 (237)
T 3fx3_A 159 AEFLLELCDCDTGACEVTLPYDKMLIAGRLGMKPESLSRAFSRLKAAGV-TVKRNHAEIEDIA 220 (237)
T ss_dssp HHHHHHHCCC-----EEECCSCTHHHHHHTTCCHHHHHHHHHHHGGGTE-ECCTTEEEESCHH
T ss_pred HHHHHHHhhhcCCCeEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHCCe-EeeCCEEEEcCHH
Confidence 5555554432211 1789999999999999 999999999995 6778889888875
No 10
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.89 E-value=1.9e-22 Score=190.87 Aligned_cols=199 Identities=11% Similarity=0.136 Sum_probs=161.8
Q ss_pred hccCCCCCCCcHHHHHHHHhh--cceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEE--EecCCCeecHHh
Q 037278 231 AGHVPMFSDWNEQILSEMCDS--LKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGV--YLQAGDFFGEEL 306 (449)
Q Consensus 231 ~s~v~lF~~l~~~~l~~L~~~--l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~--~l~~Gd~fGE~~ 306 (449)
...+|+|.++++++++.+... ++.+.|++|++|+++||+++.+|||.+|.++++..+++|++.+ .+.+|++||+.+
T Consensus 20 l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~l~~~~~G~~fG~~~ 99 (232)
T 1zyb_A 20 LLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTVIEQIEAPYLIEPQS 99 (232)
T ss_dssp GGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEEEEEEESSEEECGGG
T ss_pred HhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCEEEEEEccCCCeeeehH
Confidence 355899999999999999998 9999999999999999999999999999999998888898877 999999999999
Q ss_pred HHHhhccCC-CCCCCCCcceEEEEecceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHH
Q 037278 307 LMWALETQS-SSENLPISTRTVRTLTEVEGLALMADDLKFAASRFRQMNGEQLEHILRFYAPEWRTWAASFIQAAWRRYI 385 (449)
Q Consensus 307 l~~~l~~~~-~~~~~p~s~~tv~Alt~t~l~~L~~~df~~ll~~~~~l~~~~l~~~~r~~s~~~~~~~~~~iq~a~~r~~ 385 (449)
+ +.+.+ + +++++|+++|+++.|++++|.++++++|.+....++...+. .+...............
T Consensus 100 ~---~~~~~~~-------~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~----l~~~~~~~~~l~~~~~~ 165 (232)
T 1zyb_A 100 L---FGMNTNY-------ASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYMNIVSNR----AQNLYSRLWDEPTLDLK 165 (232)
T ss_dssp G---SSSCCBC-------SSEEEESSCEEEEEEEHHHHHHTGGGSHHHHHHHHHHHHHH----HHHHHHHTTSCCCCSHH
T ss_pred H---hCCCCCC-------ceEEEEccceEEEEEEHHHHHHHhccCHHHHHHHHHHHHHH----HHHHHHHHHHHhhcCHH
Confidence 8 66665 4 89999999999999999999999999999887766655442 22222222222222234
Q ss_pred HHHHHHHHhhhcCCCCC-----CCcchhhhhhhcHHH-HHHHHHHHHccccccCCccccccCcc
Q 037278 386 ERKLKESMRGEINRLPD-----SSPSLGATIYASRFA-ATTLRATRRIGTRAFTGESSCHDNSE 443 (449)
Q Consensus 386 ~r~~~~~~~~~~er~~~-----~~~~l~~~~~~sr~a-~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (449)
.|....+...+++.... ++.+||..+|++|.+ +++|+.|+++|-.+..+.++..+|++
T Consensus 166 ~Rl~~~L~~l~~~~~~~~~~~~t~~~lA~~lG~sr~tvsR~l~~l~~~glI~~~~~~i~I~d~~ 229 (232)
T 1zyb_A 166 SKIIRFFLSHCEKPQGEKTFKVKMDDLARCLDDTRLNISKTLNELQDNGLIELHRKEILIPDAQ 229 (232)
T ss_dssp HHHHHHHHTTCSSSSSCEEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSCEEETTEEEESCGG
T ss_pred HHHHHHHHHHHhhcCCeEEecCCHHHHHHHhCCChhHHHHHHHHHHHCCCEEecCCEEEEeChH
Confidence 45555555443332101 899999999999999 99999999999888888899998876
No 11
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.89 E-value=4.5e-22 Score=182.41 Aligned_cols=171 Identities=8% Similarity=0.051 Sum_probs=115.4
Q ss_pred HhccCCCCCCCcHHHHHHHHhhcceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEE--EecCCCeecHHhH
Q 037278 230 LAGHVPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGV--YLQAGDFFGEELL 307 (449)
Q Consensus 230 l~s~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~--~l~~Gd~fGE~~l 307 (449)
+..+++.|.++++++++.+...++.+.|++|++|+++||+++++|||.+|.++++..+++|++.+ ++.|||+|||...
T Consensus 8 l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~~~~~~~~g~~~ge~~~ 87 (194)
T 3dn7_A 8 LINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQTTQFAIENWWLSDYMA 87 (194)
T ss_dssp HHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEECCHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECCCCCEEEEEEccCCcEEeehHH
Confidence 34558999999999999999999999999999999999999999999999999998888999987 9999999998854
Q ss_pred HHhhccCCCCCCCCCcceEEEEecceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHH
Q 037278 308 MWALETQSSSENLPISTRTVRTLTEVEGLALMADDLKFAASRFRQMNGEQLEHILRFYAPEWRTWAASFIQAAWRRYIER 387 (449)
Q Consensus 308 ~~~l~~~~~~~~~p~s~~tv~Alt~t~l~~L~~~df~~ll~~~~~l~~~~l~~~~r~~s~~~~~~~~~~iq~a~~r~~~r 387 (449)
+ +.+.|+ +++++|+++|+++.|++++|.++++++|.+....++... .......++
T Consensus 88 ~--~~~~~~-------~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~----------------~~l~~~~~~ 142 (194)
T 3dn7_A 88 F--QKQQPA-------DFYIQSVENCELLSITYTEQENLFERIPALERYFRLVYQ----------------KSFAAAQLR 142 (194)
T ss_dssp H--HHTCBC-------SSEEEESSCEEEEEEEHHHHHHHHHHCTTHHHHHHHHHH----------------HHHHHHHHH
T ss_pred H--hcCCCC-------ceEEEEECCEEEEEEeHHHHHHHHHhCHHHHHHHHHHHH----------------HHHHHHHHH
Confidence 3 566665 899999999999999999999999998766554433332 222333444
Q ss_pred HHHHHHhhhcCCCCC------------CCcchhhhhhhcHHH-HHHHHHHH
Q 037278 388 KLKESMRGEINRLPD------------SSPSLGATIYASRFA-ATTLRATR 425 (449)
Q Consensus 388 ~~~~~~~~~~er~~~------------~~~~l~~~~~~sr~a-~~~~~~~~ 425 (449)
.......++++|+.. ++.+||..+|++|.+ +++++.+.
T Consensus 143 ~~~l~~~~~~~Rl~~~L~~~~~~~~~~t~~~iA~~lG~sretlsR~l~~l~ 193 (194)
T 3dn7_A 143 SKFQHMYSKEEQYHNFSSRFPEFIQRVPQYLLASYLGFTPEYLSEIRKKYI 193 (194)
T ss_dssp HHHHHHC--------------------------------------------
T ss_pred HHHHhcCCHHHHHHHHHHHChHHHHHCCHHHHHHHhCCCHHHHHHHHHhhc
Confidence 444555555555332 899999999999999 99988764
No 12
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.88 E-value=1.1e-21 Score=181.23 Aligned_cols=189 Identities=20% Similarity=0.233 Sum_probs=151.3
Q ss_pred CcHHHHHHHHhhcceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEE--EecCCCeecHHhHHHhhccC---
Q 037278 240 WNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGV--YLQAGDFFGEELLMWALETQ--- 314 (449)
Q Consensus 240 l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~--~l~~Gd~fGE~~l~~~l~~~--- 314 (449)
|++++++.+...++.+.|++|++|+++||+++++|||.+|.++++..+++|++.+ .+.+|++||+.++ +.+.
T Consensus 1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~---~~~~~~~ 77 (207)
T 2oz6_A 1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGL---FEKEGSE 77 (207)
T ss_dssp CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEESCTTT---CC-----
T ss_pred CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCCcccHHH---hcCCCCC
Confidence 6899999999999999999999999999999999999999999998888899877 9999999999988 5655
Q ss_pred -CCCCCCCCcceEEEEecceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037278 315 -SSSENLPISTRTVRTLTEVEGLALMADDLKFAASRFRQMNGEQLEHILRFYAPEWRTWAASFIQAAWRRYIERKLKESM 393 (449)
Q Consensus 315 -~~~~~~p~s~~tv~Alt~t~l~~L~~~df~~ll~~~~~l~~~~l~~~~r~~s~~~~~~~~~~iq~a~~r~~~r~~~~~~ 393 (449)
|+ +++++|+++|+++.|++++|.++++++|.+....++...+.+ +................|....+.
T Consensus 78 ~~~-------~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~~----~~~~~~~~~l~~~~~~~Rl~~~L~ 146 (207)
T 2oz6_A 78 QER-------SAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMADRL----RKTTRKVGDLAFLDVTGRVARTLL 146 (207)
T ss_dssp CBC-------CSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHH----HHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred CCc-------ceEEEECCcEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHH----HHHHHHHHHHhcCCHHHHHHHHHH
Confidence 44 899999999999999999999999999998877666654433 222222223333333445544444
Q ss_pred hhhcCCC----CC------CCcchhhhhhhcHHH-HHHHHHHHHccccccCCccccccCc
Q 037278 394 RGEINRL----PD------SSPSLGATIYASRFA-ATTLRATRRIGTRAFTGESSCHDNS 442 (449)
Q Consensus 394 ~~~~er~----~~------~~~~l~~~~~~sr~a-~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (449)
.-+++.. ++ ++.+||..+|+||.+ +++|+.|++.|-.+..+.+|..+|+
T Consensus 147 ~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i~d~ 206 (207)
T 2oz6_A 147 DLCQQPDAMTHPDGMQIKITRQEIGRIVGCSREMVGRVLKSLEEQGLVHVKGKTMVVFGT 206 (207)
T ss_dssp HHTTSTTCEEETTEEEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTEEEEETC
T ss_pred HHHHhcCCCCCCCceecccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecCCEEEEEeC
Confidence 3332211 11 889999999999999 9999999999988788888888875
No 13
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.86 E-value=1.7e-21 Score=181.82 Aligned_cols=196 Identities=11% Similarity=0.117 Sum_probs=105.4
Q ss_pred CCCCCCcHHHHHHHHhhcceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEE--EecCCCeecHHhHHHhhc
Q 037278 235 PMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGV--YLQAGDFFGEELLMWALE 312 (449)
Q Consensus 235 ~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~--~l~~Gd~fGE~~l~~~l~ 312 (449)
|.|+..++.+.+.+...++.+.|++|++|+++||+++++|||.+|.++++..+++|++.+ .+++|++||+..+ +.
T Consensus 5 ~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~~~~---~~ 81 (213)
T 1o5l_A 5 KIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQIIASGFI---FS 81 (213)
T ss_dssp --------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEEEEEECSSEESSGGGT---TS
T ss_pred ccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEecCCCEeeeHHH---hc
Confidence 778889999999999999999999999999999999999999999999998888999877 9999999999998 55
Q ss_pred cC-CCCCCCCCcceEEEEecceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHH
Q 037278 313 TQ-SSSENLPISTRTVRTLTEVEGLALMADDLKFAASRFRQMNGEQLEHILRFYAPEWRTWAASFIQAAWRRYIERKLKE 391 (449)
Q Consensus 313 ~~-~~~~~~p~s~~tv~Alt~t~l~~L~~~df~~ll~~~~~l~~~~l~~~~r~~s~~~~~~~~~~iq~a~~r~~~r~~~~ 391 (449)
+. ++ .++++|+++|+++.|++++|.++++++|.+....++...+. .+................|....
T Consensus 82 ~~~~~-------~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~----~~~~~~~~~~l~~~~~~~Rl~~~ 150 (213)
T 1o5l_A 82 SEPRF-------PVNVVAGENSKILSIPKEVFLDLLMKDRELLLFFLKDVSEH----FRVVSEKLFFLTTKTLREKLMNF 150 (213)
T ss_dssp SSCBC-------SSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH----HHHHHHHHHHHHCC---------
T ss_pred CCCCc-------eEEEEEccceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHH----HHHHHHHHHHHhhCCHHHHHHHH
Confidence 44 44 89999999999999999999999999999887666665442 22222222222223333444444
Q ss_pred HHhhhcCC--CC-C-CCcchhhhhhhcHHH-HHHHHHHHHccccccCCccccccCccc
Q 037278 392 SMRGEINR--LP-D-SSPSLGATIYASRFA-ATTLRATRRIGTRAFTGESSCHDNSEV 444 (449)
Q Consensus 392 ~~~~~~er--~~-~-~~~~l~~~~~~sr~a-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (449)
+...+++. .. . ++.+||..+|+||.+ +++|+.|++.|-.+..+.++..+|++-
T Consensus 151 L~~~~~~~g~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~G~I~~~~~~i~I~d~~~ 208 (213)
T 1o5l_A 151 LVRHMNEKRELTLPVTLEELSRLFGCARPALSRVFQELEREGYIEKHGRRIKVLKNPF 208 (213)
T ss_dssp ----------------------------------------------------------
T ss_pred HHHHhccCCcccCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCeEEEcCCEEEEechHH
Confidence 44433221 11 1 899999999999999 999999999998878888899888764
No 14
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.86 E-value=1.1e-20 Score=182.16 Aligned_cols=191 Identities=15% Similarity=0.183 Sum_probs=151.0
Q ss_pred CCCcHHHHHHHHhhcceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEE--EecCCCeecHHhHHHhhccC-
Q 037278 238 SDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGV--YLQAGDFFGEELLMWALETQ- 314 (449)
Q Consensus 238 ~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~--~l~~Gd~fGE~~l~~~l~~~- 314 (449)
..+++++++.+...++.+.|++|++|+++||+++.+|||.+|.++++..+++|++.+ ++.||++||+.++ +.+.
T Consensus 55 ~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~~~G~~~Ge~~~---~~~~~ 131 (260)
T 3kcc_A 55 KPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGL---FEEGQ 131 (260)
T ss_dssp ----CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECTTCCEEEEEEEETTCEESCTTT---TSTTC
T ss_pred CCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehHH---hCCCC
Confidence 568999999999999999999999999999999999999999999998888999877 9999999999998 5655
Q ss_pred CCCCCCCCcceEEEEecceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037278 315 SSSENLPISTRTVRTLTEVEGLALMADDLKFAASRFRQMNGEQLEHILRFYAPEWRTWAASFIQAAWRRYIERKLKESMR 394 (449)
Q Consensus 315 ~~~~~~p~s~~tv~Alt~t~l~~L~~~df~~ll~~~~~l~~~~l~~~~r~~s~~~~~~~~~~iq~a~~r~~~r~~~~~~~ 394 (449)
++ +++++|+++|+++.|++++|.++++++|.+....++...+ ..+................|....++.
T Consensus 132 ~~-------~~~~~A~~~~~l~~i~~~~~~~l~~~~p~l~~~l~~~l~~----~l~~~~~~~~~l~~~~~~~Rla~~Ll~ 200 (260)
T 3kcc_A 132 ER-------SAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMAR----RLQVTSEKVGNLAFLLVTGRIAQTLLN 200 (260)
T ss_dssp BC-------CSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHH----HHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred CC-------ceEEEECCCeEEEEEcHHHHHHHHHHCHHHHHHHHHHHHH----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 44 8999999999999999999999999999987766655544 333333333333333344455544444
Q ss_pred hhcCCC----CC------CCcchhhhhhhcHHH-HHHHHHHHHccccccCCccccccCc
Q 037278 395 GEINRL----PD------SSPSLGATIYASRFA-ATTLRATRRIGTRAFTGESSCHDNS 442 (449)
Q Consensus 395 ~~~er~----~~------~~~~l~~~~~~sr~a-~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (449)
-+++.. ++ ++.+||..+|+||.+ +++|+.|++.|-.+..+.+|..+|.
T Consensus 201 l~~~~~~~~~~~~~~l~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~~~~~i~I~d~ 259 (260)
T 3kcc_A 201 LAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGT 259 (260)
T ss_dssp HHTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSSEEEEC--
T ss_pred HHHhcCCCCCCCceeecCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEcCCEEEEEeC
Confidence 333221 11 889999999999999 9999999999988888888888764
No 15
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=99.85 E-value=8.3e-21 Score=177.56 Aligned_cols=190 Identities=8% Similarity=0.124 Sum_probs=152.6
Q ss_pred ccCCCCCCCcHHHHHHHHhhcceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEE--EecCCCeecHHhHHH
Q 037278 232 GHVPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGV--YLQAGDFFGEELLMW 309 (449)
Q Consensus 232 s~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~--~l~~Gd~fGE~~l~~ 309 (449)
..+|+|.++++++++.+...++.+.|++|++|+++||+++++|+|.+|.++++ .+++|++.+ .+.||++||+
T Consensus 7 ~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~-~~~~G~~~~~~~~~~G~~~G~----- 80 (220)
T 2fmy_A 7 TDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVY-LAYEDKEFTLAILEAGDIFCT----- 80 (220)
T ss_dssp CSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEE-EECSSCEEEEEEEETTCEEES-----
T ss_pred hcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEE-ECCCCCEEEEEEcCCCCEeCC-----
Confidence 45789999999999999999999999999999999999999999999999996 788899877 9999999997
Q ss_pred hhccCCCCCCCCCcceEEEEecceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHH
Q 037278 310 ALETQSSSENLPISTRTVRTLTEVEGLALMADDLKFAASRFRQMNGEQLEHILRFYAPEWRTWAASFIQAAWRRYIERKL 389 (449)
Q Consensus 310 ~l~~~~~~~~~p~s~~tv~Alt~t~l~~L~~~df~~ll~~~~~l~~~~l~~~~r~~s~~~~~~~~~~iq~a~~r~~~r~~ 389 (449)
|+ +++++|+++|+++.|++++|.++++++|.+....++...+.+ +................|..
T Consensus 81 -----~~-------~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~Rl~ 144 (220)
T 2fmy_A 81 -----HT-------RAFIQAMEDTTILYTDIRNFQNIVVEFPAFSLNMVKVLGDLL----KNSLTIINGLVFKDARLRLA 144 (220)
T ss_dssp -----CS-------SSEEEESSSEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHHHH----HHHHHHHHHHHTHHHHHHHH
T ss_pred -----cc-------ceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHH----HHHHHHHHHHHcCCHHHHHH
Confidence 33 889999999999999999999999999998877766655433 22222322333333334444
Q ss_pred HHHHhhhc---CCC--------CCCCcchhhhhhhcHHH-HHHHHHHHHccccccC-CccccccCcc
Q 037278 390 KESMRGEI---NRL--------PDSSPSLGATIYASRFA-ATTLRATRRIGTRAFT-GESSCHDNSE 443 (449)
Q Consensus 390 ~~~~~~~~---er~--------~~~~~~l~~~~~~sr~a-~~~~~~~~~~~~~~~~-~~~~~~~~~~ 443 (449)
..+...++ ... +-++.+||..+|+||.+ +++|+.|++.|-.+.. +.++..+|++
T Consensus 145 ~~L~~l~~~~g~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~~i~i~d~~ 211 (220)
T 2fmy_A 145 EFLVQAAMDTGLKVPQGIKLELGLNTEEIALMLGTTRQTVSVLLNDFKKMGILERVNQRTLLLKDLQ 211 (220)
T ss_dssp HHHHHHHHHHCEEETTEEEEECSSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEESSSSEEEESCHH
T ss_pred HHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEEcCCCEEEEcCHH
Confidence 44433322 111 11899999999999999 9999999999987776 7789988875
No 16
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.84 E-value=1.6e-20 Score=179.45 Aligned_cols=192 Identities=14% Similarity=0.103 Sum_probs=152.9
Q ss_pred CCCCCCCcHHHHHHHHhhcceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEE--EecCCCeecHHhHHHhh
Q 037278 234 VPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGV--YLQAGDFFGEELLMWAL 311 (449)
Q Consensus 234 v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~--~l~~Gd~fGE~~l~~~l 311 (449)
+|+ ..+++++++.+...++.+.|++|++|+++||+++.+|+|.+|.++++..+++|++.+ .++||++||+ + +
T Consensus 15 ~p~-~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~--~---l 88 (250)
T 3e6c_C 15 IPD-NFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLIGK--L---Y 88 (250)
T ss_dssp SSB-SCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECTTSCEEEEEEECTTCEECC--C---S
T ss_pred cch-hhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEee--e---c
Confidence 444 899999999999999999999999999999999999999999999998889999987 9999999999 4 5
Q ss_pred ccCCCCCCCCCcceEEEEecceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHH
Q 037278 312 ETQSSSENLPISTRTVRTLTEVEGLALMADDLKFAASRFRQMNGEQLEHILRFYAPEWRTWAASFIQAAWRRYIERKLKE 391 (449)
Q Consensus 312 ~~~~~~~~~p~s~~tv~Alt~t~l~~L~~~df~~ll~~~~~l~~~~l~~~~r~~s~~~~~~~~~~iq~a~~r~~~r~~~~ 391 (449)
.+. + +++++|+++|+++.|++++|.+++.++|.+....++...+.+. ................|....
T Consensus 89 ~~~-~-------~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~----~~~~~~~~~~~~~~~~Rl~~~ 156 (250)
T 3e6c_C 89 PTG-N-------NIYATAMEPTRTCWFSEKSLRTVFRTDEDMIFEIFKNYLTKVA----YYARQVAEMNTYNPTIRILRL 156 (250)
T ss_dssp CCS-C-------CEEEEESSSEEEEEECHHHHHHHHHHCTHHHHHHHHHHHHHHH----HHHHHHHHHTTSCHHHHHHHH
T ss_pred CCC-C-------ceEEEEcccEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHHH----HHHHHHHHHhcCCHHHHHHHH
Confidence 555 5 8999999999999999999999999999988776666554332 222222222222233333333
Q ss_pred HHh---hhcCC--------CCCCCcchhhhhhhcHHH-HHHHHHHHHccccccCCccccccCcc
Q 037278 392 SMR---GEINR--------LPDSSPSLGATIYASRFA-ATTLRATRRIGTRAFTGESSCHDNSE 443 (449)
Q Consensus 392 ~~~---~~~er--------~~~~~~~l~~~~~~sr~a-~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (449)
+.. ..+.. .+-++.+||..+|+||.+ +++|+.|+++|-.+..+.++..+|++
T Consensus 157 L~~l~~~~~~~~~~~~~i~~~~t~~~iA~~lG~sr~tvsR~l~~L~~~g~I~~~~~~i~i~d~~ 220 (250)
T 3e6c_C 157 FYELCSSQGKRVGDTYEITMPLSQKSIGEITGVHHVTVSRVLASLKRENILDKKKNKIIVYNLG 220 (250)
T ss_dssp HHHHHHHHCEEETTEEEEECCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSSEEEESCHH
T ss_pred HHHHHHHhCCCCCCCcEecCCCCHHHHHHHhCCcHHHHHHHHHHHHHCCCeEeCCCEEEEecHH
Confidence 332 22211 111899999999999999 99999999999888888889888765
No 17
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=99.84 E-value=2.5e-20 Score=174.76 Aligned_cols=190 Identities=13% Similarity=0.047 Sum_probs=153.6
Q ss_pred ccCCCCCCCcHHHHHHHHhhcceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEE--EecCCCeecHHhHHH
Q 037278 232 GHVPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGV--YLQAGDFFGEELLMW 309 (449)
Q Consensus 232 s~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~--~l~~Gd~fGE~~l~~ 309 (449)
.++|+|.++++++++.+...++.+.|++|++|+++||+++++|+|.+|.++++ .+++|++.+ .+.||++||
T Consensus 3 ~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~-~~~~G~~~~~~~~~~G~~fG------ 75 (222)
T 1ft9_A 3 PRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVY-LVGEEREISLFYLTSGDMFC------ 75 (222)
T ss_dssp CCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEE-EEETTEEEEEEEEETTCEEE------
T ss_pred ccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEE-ECCCCCEEEEEEcCCCCEec------
Confidence 45789999999999999999999999999999999999999999999999997 788899877 999999999
Q ss_pred hhccCCCCCCCCCcceEEEEecceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHH
Q 037278 310 ALETQSSSENLPISTRTVRTLTEVEGLALMADDLKFAASRFRQMNGEQLEHILRFYAPEWRTWAASFIQAAWRRYIERKL 389 (449)
Q Consensus 310 ~l~~~~~~~~~p~s~~tv~Alt~t~l~~L~~~df~~ll~~~~~l~~~~l~~~~r~~s~~~~~~~~~~iq~a~~r~~~r~~ 389 (449)
.++ +++++|+++|+++.|++++|.++++++|.+....++...+. .+................|..
T Consensus 76 ----~~~-------~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~----l~~~~~~~~~l~~~~~~~Rl~ 140 (222)
T 1ft9_A 76 ----MHS-------GCLVEATERTEVRFADIRTFEQKLQTCPSMAWGLIAILGRA----LTSCMRTIEDLMFHDIKQRIA 140 (222)
T ss_dssp ----SCS-------SCEEEESSCEEEEEECHHHHHHHHHHCGGGHHHHHHHHHHH----HHHHHHHHHHHHTHHHHHHHH
T ss_pred ----CCC-------CEEEEEccceEEEEEeHHHHHHHHHHChHHHHHHHHHHHHH----HHHHHHHHHHHhcCCHHHHHH
Confidence 233 89999999999999999999999999999887776665543 333333333333344455555
Q ss_pred HHHHhhhcCCC---C---C-----CCcchhhhhhhcHHH-HHHHHHHHHccccccCCcc-ccccCcc
Q 037278 390 KESMRGEINRL---P---D-----SSPSLGATIYASRFA-ATTLRATRRIGTRAFTGES-SCHDNSE 443 (449)
Q Consensus 390 ~~~~~~~~er~---~---~-----~~~~l~~~~~~sr~a-~~~~~~~~~~~~~~~~~~~-~~~~~~~ 443 (449)
..+..-+++.. + . ++.+||..+|+||.+ +++|+.|++.|-.+..+.+ +..+|++
T Consensus 141 ~~L~~l~~~~~~~~~~~~~~~~~~t~~~lA~~lG~sr~tvsR~l~~L~~~g~I~~~~~~i~~i~d~~ 207 (222)
T 1ft9_A 141 GFFIDHANTTGRQTQGGVIVSVDFTVEEIANLIGSSRQTTSTALNSLIKEGYISRQGRGHYTIPNLV 207 (222)
T ss_dssp HHHHHTCBCCCSCC--CCCCEECCCHHHHHHHHCSCHHHHHHHHHHHHHTTSSEECSTTCEECSSHH
T ss_pred HHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEEcCCceEEEcCHH
Confidence 55555443211 1 1 889999999999999 9999999999987777777 5666654
No 18
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=99.83 E-value=1.3e-19 Score=172.68 Aligned_cols=191 Identities=14% Similarity=0.081 Sum_probs=146.6
Q ss_pred HHHHHHHHhhcc---eEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEE--EecCCCeecHHhHHHhhccCCC
Q 037278 242 EQILSEMCDSLK---QVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGV--YLQAGDFFGEELLMWALETQSS 316 (449)
Q Consensus 242 ~~~l~~L~~~l~---~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~--~l~~Gd~fGE~~l~~~l~~~~~ 316 (449)
+++++.|..... .+.|++|++|+++||+++.+|||.+|.++++..+++|++.+ +++||++||+.++ +.+.|.
T Consensus 30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~~l~~~~~g~~~G~~~~---~~~~~~ 106 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEITVALLRENSVFGVLSL---LTGNKS 106 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTCCEEEEEEECTTCEESCHHH---HSSCCS
T ss_pred HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEcchHH---hCCCCC
Confidence 577888888888 99999999999999999999999999999998889999977 9999999999988 565542
Q ss_pred CCCCCCcceEEEEecceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 037278 317 SENLPISTRTVRTLTEVEGLALMADDLKFAASRFRQMNGEQLEHILRFYAPEWRTWAASFIQAAWRRYIERKLKESMRGE 396 (449)
Q Consensus 317 ~~~~p~s~~tv~Alt~t~l~~L~~~df~~ll~~~~~l~~~~l~~~~r~~s~~~~~~~~~~iq~a~~r~~~r~~~~~~~~~ 396 (449)
.+.++++|+++|+++.|++++|.++++++|.+....++...+.. +................|....+..-+
T Consensus 107 -----~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l----~~~~~~~~~l~~~~~~~Rla~~L~~l~ 177 (243)
T 3la7_A 107 -----DRFYHAVAFTPVELLSAPIEQVEQALKENPELSMLMLRGLSSRI----LQTEMMIETLAHRDMGSRLVSFLLILC 177 (243)
T ss_dssp -----BCCEEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHHHH----HHHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred -----cceEEEEEccceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHHHH----HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 12589999999999999999999999999998877666554422 222222222222223334433333322
Q ss_pred c---CCCC--------CCCcchhhhhhhcHHH-HHHHHHHHHccccccCCccccccCccc
Q 037278 397 I---NRLP--------DSSPSLGATIYASRFA-ATTLRATRRIGTRAFTGESSCHDNSEV 444 (449)
Q Consensus 397 ~---er~~--------~~~~~l~~~~~~sr~a-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (449)
+ ...+ -++.+||..+|+||.+ +++|+.|+++|-.+..+.+|..+|++-
T Consensus 178 ~~~g~~~~~~~~i~~~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~~~~~i~I~d~~~ 237 (243)
T 3la7_A 178 RDFGVPCADGITIDLKLSHQAIAEAIGSTRVTVTRLLGDLREKKMISIHKKKITVHKPVT 237 (243)
T ss_dssp HHHEEECSSSEEECSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEECC---
T ss_pred HHhCCCCCCCeEEeccCCHHHHHHHHCCcHHHHHHHHHHHHHCCCEEEcCCEEEECCHHH
Confidence 2 1111 1889999999999999 999999999998888899999998864
No 19
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=99.82 E-value=5e-19 Score=167.87 Aligned_cols=193 Identities=11% Similarity=0.087 Sum_probs=146.4
Q ss_pred CCCcHHHHHHHHh--hcceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEE--EecCCCeecHHhHHHhhcc
Q 037278 238 SDWNEQILSEMCD--SLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGV--YLQAGDFFGEELLMWALET 313 (449)
Q Consensus 238 ~~l~~~~l~~L~~--~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~--~l~~Gd~fGE~~l~~~l~~ 313 (449)
+++++++++.+.. .++.+.|++|++|+++||+++++|||.+|.|+++..+++|++.+ ++ +|++||+.++ +.+
T Consensus 2 ~~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~-~G~~~Ge~~~---~~~ 77 (238)
T 2bgc_A 2 SNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYY-KGAFVIMSGF---IDT 77 (238)
T ss_dssp --CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEEEEEEE-ESSEEEESBC---TTT
T ss_pred CCCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEECCCCCEEEEEEc-CCCEecchhh---hcC
Confidence 4689999999885 59999999999999999999999999999999998889999987 77 9999999988 554
Q ss_pred CCCCCCCCCcceEEEEe-cceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 037278 314 QSSSENLPISTRTVRTL-TEVEGLALMADDLKFAASRFRQMNGEQLEHILRFYAPEWRTWAASFIQAAWRRYIERKLKES 392 (449)
Q Consensus 314 ~~~~~~~p~s~~tv~Al-t~t~l~~L~~~df~~ll~~~~~l~~~~l~~~~r~~s~~~~~~~~~~iq~a~~r~~~r~~~~~ 392 (449)
.+. .+.+++.|+ ++|+++.|++++|.++++++|.+....++...+.+. ................|....+
T Consensus 78 ~~~-----~~~~~~~a~~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~----~~~~~~~~~~~~~~~~Rla~~L 148 (238)
T 2bgc_A 78 ETS-----VGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQKQVS----YSLAKFNDFSINGKLGSICSQL 148 (238)
T ss_dssp CCB-----SCCCEEEECSSEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHH----HHHHHHHHHHTTHHHHHHHHHH
T ss_pred CCc-----CcceeEEEEEcceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHH----HHHHHHHHHHccCHHHHHHHHH
Confidence 431 015677777 599999999999999999999988777666554332 2222222222222333333333
Q ss_pred Hh---hhcC------C--C-CCCCcchhhhhhhcH-HH-HHHHHHHHHccccccCCccccccCcc
Q 037278 393 MR---GEIN------R--L-PDSSPSLGATIYASR-FA-ATTLRATRRIGTRAFTGESSCHDNSE 443 (449)
Q Consensus 393 ~~---~~~e------r--~-~~~~~~l~~~~~~sr-~a-~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (449)
.. ..+. . . +-++.+||..+|+|| .+ +++|+.|++.|-.+..+.+|..+|++
T Consensus 149 ~~l~~~~g~~~~~~~~i~~~~~t~~~lA~~lG~sr~etvsR~l~~l~~~glI~~~~~~i~I~d~~ 213 (238)
T 2bgc_A 149 LILTYVYGKETPDGIKITLDNLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYKNSCFYVQNLD 213 (238)
T ss_dssp HHHHHHHEEEETTEEEECCSCCCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEEEETTEEEESCHH
T ss_pred HHHHHHhCCCCCCceEEEeccCCHHHHHHHhCCChHHHHHHHHHHHHHCCCEEecCCEEEEeCHH
Confidence 22 2211 1 2 238899999999999 79 99999999999877778889998875
No 20
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.78 E-value=9.3e-18 Score=153.80 Aligned_cols=127 Identities=16% Similarity=0.300 Sum_probs=114.8
Q ss_pred HhccCCCCCCCcHHHHHHHHhhcceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEE--EecCCCeecHHhH
Q 037278 230 LAGHVPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGV--YLQAGDFFGEELL 307 (449)
Q Consensus 230 l~s~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~--~l~~Gd~fGE~~l 307 (449)
+...+|+|.++++++++.++..++.+.|++|++|+++||+++.+|+|.+|.++++..+++|++.+ .+.+|++|||.++
T Consensus 40 ~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~~ 119 (187)
T 3gyd_A 40 IVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVNVIKDIPNKGIQTIAKVGAGAIIGEMSM 119 (187)
T ss_dssp HHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEEETTTEEEEEEEEETTCEESHHHH
T ss_pred HHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCeEEEEEccCCCeeeeHHH
Confidence 34669999999999999999999999999999999999999999999999999998888998877 9999999999998
Q ss_pred HHhhccCCCCCCCCCcceEEEEecceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHhhc
Q 037278 308 MWALETQSSSENLPISTRTVRTLTEVEGLALMADDLKFAASRFRQMNGEQLEHILRFYA 366 (449)
Q Consensus 308 ~~~l~~~~~~~~~p~s~~tv~Alt~t~l~~L~~~df~~ll~~~~~l~~~~l~~~~r~~s 366 (449)
+.+.++ +++++|+++|+++.|++++|.++++++|.+....++...+..+
T Consensus 120 ---l~~~~~-------~~~v~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~ 168 (187)
T 3gyd_A 120 ---IDGMPR-------SASCVASLPTDFAVLSRDALYQLLANMPKLGNKVLIRLLQLLT 168 (187)
T ss_dssp ---HHCCCC-------SSEEEEEEEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred ---hCCCCe-------eEEEEECCCeEEEEEcHHHHHHHHHHChHHHHHHHHHHHHHHH
Confidence 676765 8999999999999999999999999999988777765554333
No 21
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.76 E-value=2.4e-18 Score=148.75 Aligned_cols=125 Identities=12% Similarity=0.193 Sum_probs=107.1
Q ss_pred ccCCCCCCCcHHHHHHHHhhcceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeE----E-EecCCCeecHHh
Q 037278 232 GHVPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTG----V-YLQAGDFFGEEL 306 (449)
Q Consensus 232 s~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~----~-~l~~Gd~fGE~~ 306 (449)
.++|+|+++++++++.++..++.+.|++|++|+++||+++.+|+|.+|.++++..+++|++. + .+.+|++||+.+
T Consensus 9 ~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~fG~~~ 88 (142)
T 3mdp_A 9 RVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIFGVSS 88 (142)
T ss_dssp GGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC---------CEEEEECTTCEECGGG
T ss_pred hhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEechHH
Confidence 45789999999999999999999999999999999999999999999999999777777653 4 899999999998
Q ss_pred HHHhhccCCCCCCCCCcceEEEEecceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHhhc
Q 037278 307 LMWALETQSSSENLPISTRTVRTLTEVEGLALMADDLKFAASRFRQMNGEQLEHILRFYA 366 (449)
Q Consensus 307 l~~~l~~~~~~~~~p~s~~tv~Alt~t~l~~L~~~df~~ll~~~~~l~~~~l~~~~r~~s 366 (449)
+ +.+.++ +++++|.++|+++.|++++|.++++++|.+....++...+..+
T Consensus 89 ~---~~~~~~-------~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~ 138 (142)
T 3mdp_A 89 L---IKPYHY-------TSSARATKPVRVVDINGARLREMSENNQALGQVLMNNVAAAVL 138 (142)
T ss_dssp S---STTCBC-------SSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred H---cCCCCc-------eEEEEECCcEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHH
Confidence 8 666655 8999999999999999999999999999998877777665443
No 22
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=99.76 E-value=3.8e-18 Score=156.75 Aligned_cols=168 Identities=16% Similarity=0.108 Sum_probs=128.3
Q ss_pred EEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEE--EecCCCeecHHhHHHhhccCCCCCCCCCcceEEEEecc
Q 037278 255 VLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGV--YLQAGDFFGEELLMWALETQSSSENLPISTRTVRTLTE 332 (449)
Q Consensus 255 ~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~--~l~~Gd~fGE~~l~~~l~~~~~~~~~p~s~~tv~Alt~ 332 (449)
+.|++|++|+++||+++.+|+|.+|.++++..+++|++.+ .+.||++||| ++ +.+.|+ +++++|+++
T Consensus 2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~Ge-~~---~~~~~~-------~~~~~A~~~ 70 (195)
T 3b02_A 2 KRFARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLITLRHVLPGDYFGE-EA---LEGKAY-------RYTAEAMTE 70 (195)
T ss_dssp EEECTTCEEECTTSBCCCEEEEEESCEEEEEECTTSCEEEEEEECTTCEECG-GG---GTCSBC-------SSEEEESSS
T ss_pred eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEecCCCEech-hh---hCCCCc-------eeEEEECCc
Confidence 6799999999999999999999999999998888998877 9999999999 87 676665 899999999
Q ss_pred eEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC-------CC---
Q 037278 333 VEGLALMADDLKFAASRFRQMNGEQLEHILRFYAPEWRTWAASFIQAAWRRYIERKLKESMRGEINRL-------PD--- 402 (449)
Q Consensus 333 t~l~~L~~~df~~ll~~~~~l~~~~l~~~~r~~s~~~~~~~~~~iq~a~~r~~~r~~~~~~~~~~er~-------~~--- 402 (449)
|+++.|++++|. |.+....++...+ +.+................|....+..-+++.. ..
T Consensus 71 ~~v~~i~~~~~~------p~~~~~~~~~l~~----~l~~~~~~~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~ 140 (195)
T 3b02_A 71 AVVQGLEPRAMD------HEALHRVARNLAR----QMRRVQAYEAHLQTGELRARIARYLLFLADTPLSARDRQGIYVTV 140 (195)
T ss_dssp EEEEEECGGGCC------HHHHHHHHHHHHH----HHHHHHHHHHHHTSSCHHHHHHHHHHHHTTSTTEEEETTEEEEEC
T ss_pred EEEEEEcHHHcC------HHHHHHHHHHHHH----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCCCCCeeeccC
Confidence 999999999998 5555444443332 222222232222223334444444444332211 11
Q ss_pred CCcchhhhhhhcHHH-HHHHHHHHHccccccCCccccccCcc
Q 037278 403 SSPSLGATIYASRFA-ATTLRATRRIGTRAFTGESSCHDNSE 443 (449)
Q Consensus 403 ~~~~l~~~~~~sr~a-~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (449)
++.+||..+++||.+ +++|+.|++.|-.+..+.++...|++
T Consensus 141 t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i~d~~ 182 (195)
T 3b02_A 141 SHEEIADATASIRESVSKVLADLRREGLIATAYRRVYLLDLA 182 (195)
T ss_dssp CHHHHHHTTTSCHHHHHHHHHHHHHHTSEEEETTEEEECCHH
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecCCEEEEeCHH
Confidence 889999999999999 99999999999887888889988875
No 23
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.76 E-value=9.2e-18 Score=146.07 Aligned_cols=119 Identities=24% Similarity=0.333 Sum_probs=107.6
Q ss_pred hccCCCCCCCcHHHHHHHHhhcceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEE--EecCCCeecHHhHH
Q 037278 231 AGHVPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGV--YLQAGDFFGEELLM 308 (449)
Q Consensus 231 ~s~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~--~l~~Gd~fGE~~l~ 308 (449)
...+|+|.++++++++.++..++.+.|++|++|+++||+++.+|||.+|.++++..+++|++.+ .+.+|++||+.++
T Consensus 7 l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~- 85 (149)
T 2pqq_A 7 LRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENMLAVVGPSELIGELSL- 85 (149)
T ss_dssp GTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTSSEEEEEEECTTCEESGGGG-
T ss_pred hhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcEEEEEEcCCcCEechHHh-
Confidence 3558999999999999999999999999999999999999999999999999998888898877 9999999999987
Q ss_pred HhhccCCCCCCCCCcceEEEEecceEEEEEcHHHHHHHHHHcHHHHHHHHH
Q 037278 309 WALETQSSSENLPISTRTVRTLTEVEGLALMADDLKFAASRFRQMNGEQLE 359 (449)
Q Consensus 309 ~~l~~~~~~~~~p~s~~tv~Alt~t~l~~L~~~df~~ll~~~~~l~~~~l~ 359 (449)
+.+.++ .++++|.++|+++.|++++|.++++++|.+....++
T Consensus 86 --~~~~~~-------~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~ 127 (149)
T 2pqq_A 86 --FDPGPR-------TATGTALTEVKLLALGHGDLQPWLNVRPEVATALLR 127 (149)
T ss_dssp --TSCEEC-------SSEEEESSCEEEEEEEGGGHHHHHHHCTHHHHHHHH
T ss_pred --cCCCCc-------ceEEEEccceEEEEEeHHHHHHHHHhCcHHHHHHHH
Confidence 666655 899999999999999999999999998776654433
No 24
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.75 E-value=1.2e-17 Score=146.43 Aligned_cols=123 Identities=12% Similarity=0.193 Sum_probs=106.6
Q ss_pred HhccCCCCCCCcHHHHHHHHhhcceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEE--EecCCCeecHHhH
Q 037278 230 LAGHVPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGV--YLQAGDFFGEELL 307 (449)
Q Consensus 230 l~s~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~--~l~~Gd~fGE~~l 307 (449)
+..++++|.++++++++.++..++.+.|++|++|+++||+++.+|||.+|.++++..+++|++.+ .+.+|++||+..+
T Consensus 13 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~ 92 (154)
T 2z69_A 13 LLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEAMM 92 (154)
T ss_dssp HHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-----CCEEECTTEEESGGGG
T ss_pred HhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCEEEEEEccCCCeeccHhh
Confidence 34668999999999999999999999999999999999999999999999999997777888876 9999999999998
Q ss_pred HHhhccCC-CCCCCCCcceEEEEecceEEEEEcHHHHHHHHHHcHHHHHHHHHHHH
Q 037278 308 MWALETQS-SSENLPISTRTVRTLTEVEGLALMADDLKFAASRFRQMNGEQLEHIL 362 (449)
Q Consensus 308 ~~~l~~~~-~~~~~p~s~~tv~Alt~t~l~~L~~~df~~ll~~~~~l~~~~l~~~~ 362 (449)
+.+.+ + .++++|.++|+++.|++++|.++++++|.+....++...
T Consensus 93 ---~~~~~~~-------~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~~~ 138 (154)
T 2z69_A 93 ---FMDTPNY-------VATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLS 138 (154)
T ss_dssp ---GSSCSBC-------SSEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---ccCCCCC-------ceEEEEccceEEEEECHHHHHHHHHHChHHHHHHHHHHH
Confidence 66665 4 899999999999999999999999999887766655443
No 25
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=99.74 E-value=8.9e-18 Score=154.95 Aligned_cols=174 Identities=16% Similarity=0.107 Sum_probs=129.4
Q ss_pred HHhhcceEEeCCCCEEecCCCCc--CeEEEEEEeEEEEEEeeCCCeeEE--EecCCCeecHHhHHHhhccCCCCCCCCCc
Q 037278 248 MCDSLKQVLYTAESYIQQEGDPV--SEMFFITRGQLLTMKTTNRKRTGV--YLQAGDFFGEELLMWALETQSSSENLPIS 323 (449)
Q Consensus 248 L~~~l~~~~~~~ge~I~~eGd~~--~~myfI~~G~v~v~~~~~~G~e~~--~l~~Gd~fGE~~l~~~l~~~~~~~~~p~s 323 (449)
|...++.+.|++|++|+++||++ +++|+|.+|.++++..+++|++.+ .+.|||+||+ ++ +.+.++
T Consensus 1 l~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~-~~---l~~~~~------- 69 (202)
T 2zcw_A 1 MTQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALTLRLVRPGGFFGE-EA---LFGQER------- 69 (202)
T ss_dssp -----CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEECTTSCEEEEEEECTTCEECT-HH---HHTCCB-------
T ss_pred CCccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCCEeee-hh---cCCCCc-------
Confidence 34567899999999999999999 999999999999998888999887 9999999999 66 555655
Q ss_pred ceEEEEecceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC---
Q 037278 324 TRTVRTLTEVEGLALMADDLKFAASRFRQMNGEQLEHILRFYAPEWRTWAASFIQAAWRRYIERKLKESMRGEINRL--- 400 (449)
Q Consensus 324 ~~tv~Alt~t~l~~L~~~df~~ll~~~~~l~~~~l~~~~r~~s~~~~~~~~~~iq~a~~r~~~r~~~~~~~~~~er~--- 400 (449)
+++++|+++|+++.| +++|. |.+....++...+ ..+................|....+..-+++..
T Consensus 70 ~~~~~A~~~~~v~~i-~~~~~------p~~~~~~~~~l~~----~l~~~~~~~~~~~~~~~~~Rl~~~L~~l~~~~~~~~ 138 (202)
T 2zcw_A 70 IYFAEAATDVRLEPL-PENPD------PELLKDLAQHLSQ----GLAEAYRRIERLATQRLKNRMAAALLELSETPLAHE 138 (202)
T ss_dssp CSEEEESSCEEEEEC-CSSCC------HHHHHHHHHHHHH----HHHHHHHHHHHHHHCCHHHHHHHHHHHHTTSTTEEE
T ss_pred ceEEEEcccEEEEEE-hHhcC------HHHHHHHHHHHHH----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCC
Confidence 899999999999999 88886 5544444433332 333333333333333344455555444333211
Q ss_pred --CC-----CCcchhhhhhhcHHH-HHHHHHHHHccccccCCccccccCcc
Q 037278 401 --PD-----SSPSLGATIYASRFA-ATTLRATRRIGTRAFTGESSCHDNSE 443 (449)
Q Consensus 401 --~~-----~~~~l~~~~~~sr~a-~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (449)
.. ++.+||..+++||.+ +++|+.|+++|-.+..+.++..+|++
T Consensus 139 ~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i~d~~ 189 (202)
T 2zcw_A 139 EEGKVVLKATHDELAAAVGSVRETVTKVIGELAREGYIRSGYGKIQLLDLK 189 (202)
T ss_dssp ETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEESCHH
T ss_pred CCcEEccCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeCCCEEEEeCHH
Confidence 11 899999999999999 99999999999887888899998875
No 26
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.73 E-value=3e-19 Score=180.20 Aligned_cols=112 Identities=27% Similarity=0.417 Sum_probs=0.0
Q ss_pred CCCCCCCcHHHHHHHHhhcceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeecHHhHHHhhcc
Q 037278 234 VPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFGEELLMWALET 313 (449)
Q Consensus 234 v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fGE~~l~~~l~~ 313 (449)
+|+|+++++++++.++..++.+.|+|||.|++|||+++++|+|.+|.++++..+ + ..+++||+|||.++ +.+
T Consensus 233 ~~lf~~ls~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~----~-~~l~~G~~fGe~~~---l~~ 304 (355)
T 3beh_A 233 VPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN----P-VELGPGAFFGEMAL---ISG 304 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeeEEEEEECC----e-eEECCCCEEeehHH---hCC
Confidence 899999999999999999999999999999999999999999999999998433 1 27999999999988 676
Q ss_pred CCCCCCCCCcceEEEEecceEEEEEcHHHHHHHHHHcHHHHHHHHHH
Q 037278 314 QSSSENLPISTRTVRTLTEVEGLALMADDLKFAASRFRQMNGEQLEH 360 (449)
Q Consensus 314 ~~~~~~~p~s~~tv~Alt~t~l~~L~~~df~~ll~~~~~l~~~~l~~ 360 (449)
.|+ +++++|.++|+++.+++++|.++++++|.+.....+.
T Consensus 305 ~~~-------~~~~~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~ 344 (355)
T 3beh_A 305 EPR-------SATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKT 344 (355)
T ss_dssp -----------------------------------------------
T ss_pred CCc-------ceEEEECccEEEEEEeHHHHHHHHHHCHHHHHHHHHH
Confidence 665 8999999999999999999999999998877655444
No 27
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=99.72 E-value=6.9e-17 Score=148.80 Aligned_cols=120 Identities=22% Similarity=0.338 Sum_probs=107.1
Q ss_pred hccCCCCCCCcHHHHHHHHhhcceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeecHHhHHHh
Q 037278 231 AGHVPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFGEELLMWA 310 (449)
Q Consensus 231 ~s~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fGE~~l~~~ 310 (449)
...+|+|.++++++++.++..++...|+||++|+++||+++++|||.+|.|+++. .+|+....+++|++|||.++
T Consensus 73 l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~--~~g~~~~~l~~G~~fGe~~~--- 147 (198)
T 2ptm_A 73 VASVPFFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIM--SDGVIATSLSDGSYFGEICL--- 147 (198)
T ss_dssp HHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEEC--TTSCEEEEECTTCEESCHHH---
T ss_pred HhcCcchhcCCHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEe--cCCeEEEEecCCCEechHHH---
Confidence 4558999999999999999999999999999999999999999999999999983 67773339999999999988
Q ss_pred hccCCCCCCCCCcceEEEEecceEEEEEcHHHHHHHHHHcHHHHHHHHHHHH
Q 037278 311 LETQSSSENLPISTRTVRTLTEVEGLALMADDLKFAASRFRQMNGEQLEHIL 362 (449)
Q Consensus 311 l~~~~~~~~~p~s~~tv~Alt~t~l~~L~~~df~~ll~~~~~l~~~~l~~~~ 362 (449)
+.+.++ +++++|.++|+++.|++++|.++++++|.+....++...
T Consensus 148 ~~~~~~-------~~~~~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~ 192 (198)
T 2ptm_A 148 LTRERR-------VASVKCETYCTLFSLSVQHFNQVLDEFPAMRKTMEEIAV 192 (198)
T ss_dssp HHSSCC-------SSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred cCCCcc-------ceEEEEeeEEEEEEEeHHHHHHHHHHChHHHHHHHHHHH
Confidence 676766 899999999999999999999999999988766655443
No 28
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.72 E-value=4.1e-17 Score=145.02 Aligned_cols=115 Identities=13% Similarity=0.157 Sum_probs=105.6
Q ss_pred HhccCCCCCCCcHHHHHHHHhhcceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEE--EecCCCeecHHhH
Q 037278 230 LAGHVPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGV--YLQAGDFFGEELL 307 (449)
Q Consensus 230 l~s~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~--~l~~Gd~fGE~~l 307 (449)
+...+|+|.++++++++.++..++.+.|++|++|+++||+++++|+|.+|.++++. ..+|++.+ .+.+|++|||.++
T Consensus 39 ~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~-~~~g~~~~~~~~~~G~~fGe~~~ 117 (161)
T 3idb_B 39 ACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYV-KCDGVGRCVGNYDNRGSFGELAL 117 (161)
T ss_dssp HHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEE-EETTEEEEEEEEESCCEECGGGG
T ss_pred HHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEE-cCCCCeEEEEEcCCCCEechHHH
Confidence 34568999999999999999999999999999999999999999999999999996 77888877 9999999999998
Q ss_pred HHhhccCCCCCCCCCcceEEEEecceEEEEEcHHHHHHHHHHcHHHHH
Q 037278 308 MWALETQSSSENLPISTRTVRTLTEVEGLALMADDLKFAASRFRQMNG 355 (449)
Q Consensus 308 ~~~l~~~~~~~~~p~s~~tv~Alt~t~l~~L~~~df~~ll~~~~~l~~ 355 (449)
+.+.++ +++++|+++|+++.|++++|.++++++|.+..
T Consensus 118 ---~~~~~~-------~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~ 155 (161)
T 3idb_B 118 ---MYNTPR-------AATITATSPGALWGLDRVTFRRIIVKNNAKKR 155 (161)
T ss_dssp ---TCCCCC-------SSEEEESSSEEEEEEEHHHHHHHHHHHHHTSC
T ss_pred ---HcCCCc-------ccEEEECCCeEEEEEeHHHHHHHHHHCHHHHH
Confidence 676765 89999999999999999999999999987653
No 29
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.71 E-value=1.2e-17 Score=144.04 Aligned_cols=122 Identities=53% Similarity=0.934 Sum_probs=104.0
Q ss_pred ccCCCCCCCcHHHHHHHHhhcceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEE----EecCCCeecHHhH
Q 037278 232 GHVPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGV----YLQAGDFFGEELL 307 (449)
Q Consensus 232 s~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~----~l~~Gd~fGE~~l 307 (449)
.++|+|.++++++++.++..++.+.|++|++|+++||+++.+|||.+|.+++. ..++|++.+ .+.+|++|||.++
T Consensus 9 ~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~-~~~~g~~~~~~~~~l~~G~~fGe~~l 87 (137)
T 1wgp_A 9 RRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESV-TTDGGRSGFYNRSLLKEGDFCGDELL 87 (137)
T ss_dssp SSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEE-CCSSCSSSSSCEEECCTTCBSSTHHH
T ss_pred HcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE-EcCCCcceeeeeeeecCCCEecHHHH
Confidence 45899999999999999999999999999999999999999999999999965 677887742 7899999999986
Q ss_pred HHhhccCCCCCCCCCcceEEEEecceEEEEEcHHHHHHHHHHcHHHHH
Q 037278 308 MWALETQSSSENLPISTRTVRTLTEVEGLALMADDLKFAASRFRQMNG 355 (449)
Q Consensus 308 ~~~l~~~~~~~~~p~s~~tv~Alt~t~l~~L~~~df~~ll~~~~~l~~ 355 (449)
+|++.+.++. ..|+++++++|+++|+++.|++++|.++++++|.+.+
T Consensus 88 ~~~~~~~~~~-~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~ 134 (137)
T 1wgp_A 88 TWALDPKSGS-NLPSSTRTVKALTEVEAFALIADELKFVASQFRRSGP 134 (137)
T ss_dssp HHHHCSSCCS-SSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHCCCTT
T ss_pred HHHhcccccc-ccccceeEEEEeEEEEEEEECHHHHHHHHHHCHhhHh
Confidence 3336766430 1223589999999999999999999999999876543
No 30
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=99.70 E-value=7.6e-17 Score=150.11 Aligned_cols=125 Identities=17% Similarity=0.313 Sum_probs=110.0
Q ss_pred cCCCCCCCcHHHHHHHHhhcceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeecHHhHHHhhc
Q 037278 233 HVPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFGEELLMWALE 312 (449)
Q Consensus 233 ~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fGE~~l~~~l~ 312 (449)
.+|+|.++++++++.++..++...|+|||+|+++||+++++|||.+|.|+++. +|.....+++||+|||.++ +.
T Consensus 79 ~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~---~~~~~~~l~~G~~fGe~~~---~~ 152 (212)
T 3ukn_A 79 QLPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLK---DNTVLAILGKGDLIGSDSL---TK 152 (212)
T ss_dssp GSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEES---SSCEEEEECTTCEEECSCC---SS
T ss_pred hcHHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEE---CCeEEEEecCCCCcCcHHh---cc
Confidence 58999999999999999999999999999999999999999999999999983 4433339999999999988 56
Q ss_pred cC--CCCCCCCCcceEEEEecceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHhhchhHH
Q 037278 313 TQ--SSSENLPISTRTVRTLTEVEGLALMADDLKFAASRFRQMNGEQLEHILRFYAPEWR 370 (449)
Q Consensus 313 ~~--~~~~~~p~s~~tv~Alt~t~l~~L~~~df~~ll~~~~~l~~~~l~~~~r~~s~~~~ 370 (449)
+. ++ +++++|+++|+++.|++++|.++++++|.+....++...+..+...+
T Consensus 153 ~~~~~~-------~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~~l~~~lr 205 (212)
T 3ukn_A 153 EQVIKT-------NANVKALTYCDLQYISLKGLREVLRLYPEYAQKFVSEIQHDLTYNLR 205 (212)
T ss_dssp SSCCBB-------CSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHEEEECB
T ss_pred CCCCCc-------ceEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHhhccccc
Confidence 55 44 89999999999999999999999999999998888777665554443
No 31
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=99.69 E-value=1.3e-16 Score=147.50 Aligned_cols=117 Identities=25% Similarity=0.394 Sum_probs=104.2
Q ss_pred HhccCCCCCCCcHHHHHHHHhhcceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeecHHhHHH
Q 037278 230 LAGHVPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFGEELLMW 309 (449)
Q Consensus 230 l~s~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fGE~~l~~ 309 (449)
+...+|+|.++++++++.++..++...|+||++|+++||+++++|||.+|.|+++ .++|++. .+++|++|||.++
T Consensus 73 ~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~--~~~g~~~-~l~~G~~fGe~~~-- 147 (202)
T 3bpz_A 73 LVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVL--TKGNKEM-KLSDGSYFGEICL-- 147 (202)
T ss_dssp HHHTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEE--CTTSCCE-EEETTCEECHHHH--
T ss_pred HHhcCCchhcCCHHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEEEE--ECCCeEE-EEcCCCEeccHHH--
Confidence 4456999999999999999999999999999999999999999999999999997 4667665 6899999999988
Q ss_pred hhccCCCCCCCCCcceEEEEecceEEEEEcHHHHHHHHHHcHHHHHHHHH
Q 037278 310 ALETQSSSENLPISTRTVRTLTEVEGLALMADDLKFAASRFRQMNGEQLE 359 (449)
Q Consensus 310 ~l~~~~~~~~~p~s~~tv~Alt~t~l~~L~~~df~~ll~~~~~l~~~~l~ 359 (449)
+.+.++ +++++|.++|+++.|++++|.++++++|.+....++
T Consensus 148 -~~~~~~-------~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~ 189 (202)
T 3bpz_A 148 -LTRGRR-------TASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFET 189 (202)
T ss_dssp -HHCSBC-------SSEEEESSCEEEEEEEHHHHHHHHHHSGGGHHHHHH
T ss_pred -hcCCCc-------ccEEEEeeEEEEEEEEHHHHHHHHHHCHHHHHHHHH
Confidence 666665 899999999999999999999999999776654433
No 32
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.69 E-value=2.4e-16 Score=136.48 Aligned_cols=113 Identities=22% Similarity=0.251 Sum_probs=96.6
Q ss_pred hccCCCCCCCcHHHHHHHHhhcceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeecHHhHHHh
Q 037278 231 AGHVPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFGEELLMWA 310 (449)
Q Consensus 231 ~s~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fGE~~l~~~ 310 (449)
...+++|.++++++++.++..++.+.|++|++|+++||+++.+|+|.+|.+++.. +|+....+.+|++|||.++
T Consensus 25 l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~---~g~~~~~~~~G~~fGe~~~--- 98 (139)
T 3ocp_A 25 ILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK---EGVKLCTMGPGKVFGELAI--- 98 (139)
T ss_dssp HHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEE---TTEEEEEECTTCEESCHHH---
T ss_pred HhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEE---CCEEEEEeCCCCEeccHHH---
Confidence 3458999999999999999999999999999999999999999999999999963 5553339999999999998
Q ss_pred hccCCCCCCCCCcceEEEEecceEEEEEcHHHHHHHHHHcHHHHHH
Q 037278 311 LETQSSSENLPISTRTVRTLTEVEGLALMADDLKFAASRFRQMNGE 356 (449)
Q Consensus 311 l~~~~~~~~~p~s~~tv~Alt~t~l~~L~~~df~~ll~~~~~l~~~ 356 (449)
+.+.++ +++++|+++|+++.|++++|.++++++|.+..+
T Consensus 99 l~~~~~-------~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~r~ 137 (139)
T 3ocp_A 99 LYNCTR-------TATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHT 137 (139)
T ss_dssp HHCCCC-------SSEEEESSCEEEEEEEHHHHHHHHTC-------
T ss_pred HCCCCc-------ceEEEECcceEEEEEcHHHHHHHHhhChHhhhh
Confidence 676665 899999999999999999999999999876644
No 33
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.69 E-value=2.1e-16 Score=136.11 Aligned_cols=119 Identities=27% Similarity=0.413 Sum_probs=105.2
Q ss_pred HhccCCCCCCCcHHHHHHHHhhcceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeecHHhHHH
Q 037278 230 LAGHVPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFGEELLMW 309 (449)
Q Consensus 230 l~s~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fGE~~l~~ 309 (449)
+..++|+|.++++++++.++..++.+.|++|++|+++||+++.+|||.+|.++++..+ + ..+.+|++||+.++
T Consensus 12 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~----~-~~~~~G~~~G~~~~-- 84 (138)
T 1vp6_A 12 LVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN----P-VELGPGAFFGEMAL-- 84 (138)
T ss_dssp HHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSS----C-EEECTTCEECHHHH--
T ss_pred HHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeCC----c-ceECCCCEeeehHh--
Confidence 3466899999999999999999999999999999999999999999999999998322 2 27999999999988
Q ss_pred hhccCCCCCCCCCcceEEEEecceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHH
Q 037278 310 ALETQSSSENLPISTRTVRTLTEVEGLALMADDLKFAASRFRQMNGEQLEHILR 363 (449)
Q Consensus 310 ~l~~~~~~~~~p~s~~tv~Alt~t~l~~L~~~df~~ll~~~~~l~~~~l~~~~r 363 (449)
+.+.++ +++++|.++|+++.|++++|.++++++|.+....++...+
T Consensus 85 -~~~~~~-------~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~ 130 (138)
T 1vp6_A 85 -ISGEPR-------SATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALE 130 (138)
T ss_dssp -HHCCCC-------SSCEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred -ccCCCc-------eeEEEECCCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 676665 8999999999999999999999999998887766665544
No 34
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.67 E-value=6.9e-16 Score=136.11 Aligned_cols=117 Identities=21% Similarity=0.298 Sum_probs=103.7
Q ss_pred hccCCCCCCCcHHHHHHHHhhcceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEE-EecCCCeecHHhHHH
Q 037278 231 AGHVPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGV-YLQAGDFFGEELLMW 309 (449)
Q Consensus 231 ~s~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~-~l~~Gd~fGE~~l~~ 309 (449)
...+|+|.++++++++.+...++.+.|++|++|+++||+++++|+|.+|.++++. ++ ... .+++|++||+.++
T Consensus 29 l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~---~~-~~~~~~~~G~~fG~~~~-- 102 (160)
T 4f8a_A 29 FKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQ---DD-EVVAILGKGDVFGDVFW-- 102 (160)
T ss_dssp HTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEE---TT-EEEEEEETTCEEECCTT--
T ss_pred HHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEE---CC-EEEEEecCCCEeCcHHH--
Confidence 4568999999999999999999999999999999999999999999999999984 22 334 9999999999988
Q ss_pred hhcc--CCCCCCCCCcceEEEEecceEEEEEcHHHHHHHHHHcHHHHHHHHHHH
Q 037278 310 ALET--QSSSENLPISTRTVRTLTEVEGLALMADDLKFAASRFRQMNGEQLEHI 361 (449)
Q Consensus 310 ~l~~--~~~~~~~p~s~~tv~Alt~t~l~~L~~~df~~ll~~~~~l~~~~l~~~ 361 (449)
+.+ .++ +++++|.++|+++.|++++|.++++++|.+....++..
T Consensus 103 -~~~~~~~~-------~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l 148 (160)
T 4f8a_A 103 -KEATLAQS-------CANVRALTYCDLHVIKRDALQKVLEFYTAFSHSFSRNL 148 (160)
T ss_dssp -TCSSCCBC-------SSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHC
T ss_pred -hcCcccce-------EEEEEECCceEEEEEcHHHHHHHHHHHHHHHHHHHHHH
Confidence 555 344 89999999999999999999999999998887666553
No 35
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.67 E-value=6e-16 Score=153.76 Aligned_cols=120 Identities=15% Similarity=0.201 Sum_probs=108.9
Q ss_pred hccCCCCCCCcHHHHHHHHhhcceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEE-EecCCCeecHHhHHH
Q 037278 231 AGHVPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGV-YLQAGDFFGEELLMW 309 (449)
Q Consensus 231 ~s~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~-~l~~Gd~fGE~~l~~ 309 (449)
..++|+|+++++++++.+...++.+.|++|++|+++||+++.+|||.+|.+++++.+.+|++.+ .+.+|++|||.++
T Consensus 15 l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~G~~fGe~~l-- 92 (333)
T 4ava_A 15 LAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVAIIARALPGMIVGEIAL-- 92 (333)
T ss_dssp HTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTTCCEEEEEECTTCEESHHHH--
T ss_pred HhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEecCCCEeeHHHh--
Confidence 3568999999999999999999999999999999999999999999999999998888898866 9999999999988
Q ss_pred hhccCCCCCCCCCcceEEEEecceEEEEEcHHHHHHHHHHcHHHHHHHHHHH
Q 037278 310 ALETQSSSENLPISTRTVRTLTEVEGLALMADDLKFAASRFRQMNGEQLEHI 361 (449)
Q Consensus 310 ~l~~~~~~~~~p~s~~tv~Alt~t~l~~L~~~df~~ll~~~~~l~~~~l~~~ 361 (449)
+.+.|+ +++++|+++|+++.|++++|.+++ ++|.+....++..
T Consensus 93 -~~~~~~-------~~~v~A~~~~~~~~i~~~~~~~l~-~~p~~~~~~~~~~ 135 (333)
T 4ava_A 93 -LRDSPR-------SATVTTIEPLTGWTGGRGAFATMV-HIPGVGERLLRTA 135 (333)
T ss_dssp -HHTCBC-------SSEEEESSCEEEEEECHHHHHHHH-HSTTHHHHHHHHH
T ss_pred -cCCCCc-------eEEEEEecCEEEEEEcHHHHHHHH-hChHHHHHHHHHH
Confidence 676766 899999999999999999999999 8888766554443
No 36
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.66 E-value=5.8e-16 Score=136.66 Aligned_cols=110 Identities=19% Similarity=0.244 Sum_probs=99.7
Q ss_pred ccCCCCCCCcHHHHHHHHhhcceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeecHHhHHHhh
Q 037278 232 GHVPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFGEELLMWAL 311 (449)
Q Consensus 232 s~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fGE~~l~~~l 311 (449)
..+|+|.++++++++.++..++.+.|++|++|+++||+++++|||.+|.++++. +|+....+.+|++||+.++ +
T Consensus 41 ~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~---~~~~~~~~~~G~~fGe~~~---~ 114 (154)
T 3pna_A 41 EKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV---NNEWATSVGEGGSFGELAL---I 114 (154)
T ss_dssp HHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEE---TTEEEEEECTTCEECCHHH---H
T ss_pred HhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEE---CCEEEEEecCCCEeeehHh---h
Confidence 458999999999999999999999999999999999999999999999999984 5554449999999999998 6
Q ss_pred ccCCCCCCCCCcceEEEEecceEEEEEcHHHHHHHHHHcHHHH
Q 037278 312 ETQSSSENLPISTRTVRTLTEVEGLALMADDLKFAASRFRQMN 354 (449)
Q Consensus 312 ~~~~~~~~~p~s~~tv~Alt~t~l~~L~~~df~~ll~~~~~l~ 354 (449)
.+.++ +++++|+++|+++.|++++|.+++++++.+.
T Consensus 115 ~~~~~-------~~~v~A~~~~~~~~i~~~~~~~ll~~~~~~~ 150 (154)
T 3pna_A 115 YGTPR-------AATVKAKTNVKLWGIDRDSYRRILMGSTLRK 150 (154)
T ss_dssp HCCCC-------SSEEEESSCEEEEEEEHHHHHHHTHHHHHHC
T ss_pred cCCCc-------ceEEEECcceEEEEEeHHHHHHHHHhChHHH
Confidence 66765 8999999999999999999999999976554
No 37
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.65 E-value=3.9e-16 Score=162.29 Aligned_cols=199 Identities=15% Similarity=0.109 Sum_probs=147.2
Q ss_pred hccCCCCCCCcHHHHHHHHhhcceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCe--eEE--EecCCCeecHHh
Q 037278 231 AGHVPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKR--TGV--YLQAGDFFGEEL 306 (449)
Q Consensus 231 ~s~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~--e~~--~l~~Gd~fGE~~ 306 (449)
...+++|.++++++++.++..++.+.|++|++|+++||+++.+|+|.+|.++++....+|+ +.+ .+++|++|||.+
T Consensus 44 l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~~~~g~~~~~~~~~~~~G~~fGe~~ 123 (469)
T 1o7f_A 44 LKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTAFGESI 123 (469)
T ss_dssp HTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSSCGGGCEEEEEECTTCEECGGG
T ss_pred HhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEecCCCCCcceEEEEccCCCCcchhh
Confidence 4568999999999999999999999999999999999999999999999999998777885 244 999999999986
Q ss_pred HHHhhccCCCCCCCCCcceEEEEecceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHhhchhHHHHHHH--------HHH
Q 037278 307 LMWALETQSSSENLPISTRTVRTLTEVEGLALMADDLKFAASRFRQMNGEQLEHILRFYAPEWRTWAAS--------FIQ 378 (449)
Q Consensus 307 l~~~l~~~~~~~~~p~s~~tv~Alt~t~l~~L~~~df~~ll~~~~~l~~~~l~~~~r~~s~~~~~~~~~--------~iq 378 (449)
+ .+.|+ +++++|.++|+++.|++++|.++++++|.+....++.+.+.. +.+... ...
T Consensus 124 -l---~~~~~-------~~tv~A~~~~~l~~i~~~~~~~l~~~~p~~~~~l~~~~~~~l----~~~~~~~~l~~~~~~~~ 188 (469)
T 1o7f_A 124 -L---DNTPR-------HATIVTRESSELLRIEQEDFKALWEKYRQYMAGLLAPPYGVM----ETGSNNDRIPDKENVPS 188 (469)
T ss_dssp -G---GTCBC-------SSEEEESSSEEEEEEEHHHHHHHHHHHGGGTTTTSCTTTSCS----CC------------CCC
T ss_pred -h---CCCCc-------cceEEEccceeEEEEcHHHHHHHHHhCHHHHHHHHHHHHHHH----HhccCcccCCCcCCCch
Confidence 3 44555 899999999999999999999999999886544433222211 111110 001
Q ss_pred HHHHHHHHHHHHHHHhhhcC----CCC--C------CCcchhhhh-h-----hcHHH-HHHHHHHHHccccccCCccccc
Q 037278 379 AAWRRYIERKLKESMRGEIN----RLP--D------SSPSLGATI-Y-----ASRFA-ATTLRATRRIGTRAFTGESSCH 439 (449)
Q Consensus 379 ~a~~r~~~r~~~~~~~~~~e----r~~--~------~~~~l~~~~-~-----~sr~a-~~~~~~~~~~~~~~~~~~~~~~ 439 (449)
.+..+..+|....++..+.. +.. . ++.++|..+ + .||.. .++++.|+++|.....+.++..
T Consensus 189 ~~~~~~~~rla~~Ll~~~~~~~~~~~~~~~~~~~~~t~~ela~~llg~~~~t~SR~~~~~~l~~L~~~G~I~~~~~~i~i 268 (469)
T 1o7f_A 189 EKILRAGKILRIAILSRAPHMIRDRKYHLKTYRQCCVGTELVDWMIQQTSCVHSRTQAVGMWQVLLEDGVLNHVDQERHF 268 (469)
T ss_dssp SHHHHHHHHHHHHHHHHCGGGSEEEECSSCEEEEEEEHHHHHHHHHHSSSCCSCHHHHHHHHHHHHHTTSEEESSCCSSC
T ss_pred HHHHHHHHHHHHHHHhcCCcceeeccccceEeeeeccccchHHHHHhcCCCCCCHHHHHHHHHHHHhccceeecccccee
Confidence 12233444555444444321 111 1 667888855 5 47775 7789999999988888888888
Q ss_pred cCccc
Q 037278 440 DNSEV 444 (449)
Q Consensus 440 ~~~~~ 444 (449)
+|++.
T Consensus 269 ~d~~~ 273 (469)
T 1o7f_A 269 QDKYL 273 (469)
T ss_dssp CSSSC
T ss_pred eecce
Confidence 87653
No 38
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.58 E-value=1.4e-14 Score=140.68 Aligned_cols=121 Identities=17% Similarity=0.260 Sum_probs=107.8
Q ss_pred hccCCCCCCCcHHHHHHHHhhcceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCC-eeEE--EecCCCeecHHhH
Q 037278 231 AGHVPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRK-RTGV--YLQAGDFFGEELL 307 (449)
Q Consensus 231 ~s~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G-~e~~--~l~~Gd~fGE~~l 307 (449)
...+++|..++++.+..++..++...|++|++|+++||+++.+|+|.+|.+++++...+| ++.. .+++|++|||.++
T Consensus 159 l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~~l~~G~~fGe~~l 238 (291)
T 2qcs_B 159 LSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFGEIAL 238 (291)
T ss_dssp HHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCEEEEEEECTTCEECSGGG
T ss_pred HhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCccEEEEEeCCCCEecHHHH
Confidence 456899999999999999999999999999999999999999999999999999766555 3333 9999999999998
Q ss_pred HHhhccCCCCCCCCCcceEEEEecceEEEEEcHHHHHHHHHHcHHHHHHHHHHH
Q 037278 308 MWALETQSSSENLPISTRTVRTLTEVEGLALMADDLKFAASRFRQMNGEQLEHI 361 (449)
Q Consensus 308 ~~~l~~~~~~~~~p~s~~tv~Alt~t~l~~L~~~df~~ll~~~~~l~~~~l~~~ 361 (449)
+.+.|+ +++++|.++|+++.|++++|.+++.++|.+..+.++..
T Consensus 239 ---l~~~~~-------~~tv~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~~~~~ 282 (291)
T 2qcs_B 239 ---LMNRPK-------AATVVARGPLKCVKLDRPRFERVLGPCSDILKRNIQQY 282 (291)
T ss_dssp ---TCCCCC-------SSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTTSHHHH
T ss_pred ---cCCCCc-------ceEEEECCcEEEEEEcHHHHHHHhccHHHHHHHHHHHH
Confidence 677766 89999999999999999999999999998877666544
No 39
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.58 E-value=9.7e-15 Score=137.64 Aligned_cols=117 Identities=13% Similarity=0.079 Sum_probs=102.8
Q ss_pred hccCCCCCCCcHHHHHHHHhhcceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeecHHhHHHh
Q 037278 231 AGHVPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFGEELLMWA 310 (449)
Q Consensus 231 ~s~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fGE~~l~~~ 310 (449)
..++|+|.++++++++.++..++.+.|++|++|+++||+++++|+|.+|.++++. +|++...+.+|++|||.++
T Consensus 9 l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~---~~~~~~~~~~g~~fGe~~l--- 82 (246)
T 3of1_A 9 IRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYV---NDNKVNSSGPGSSFGELAL--- 82 (246)
T ss_dssp HHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEES---TTSCCEEECTTCEECHHHH---
T ss_pred HhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEE---CCEEEEecCCCCeeehhHH---
Confidence 3568999999999999999999999999999999999999999999999999983 4555448999999999988
Q ss_pred hccCCCCCCCCCcceEEEEecceEEEEEcHHHHHHHHHHcHHHHHHHHHH
Q 037278 311 LETQSSSENLPISTRTVRTLTEVEGLALMADDLKFAASRFRQMNGEQLEH 360 (449)
Q Consensus 311 l~~~~~~~~~p~s~~tv~Alt~t~l~~L~~~df~~ll~~~~~l~~~~l~~ 360 (449)
+.+.|+ +++++|.++|+++.|++++|..++.++|.........
T Consensus 83 ~~~~~~-------~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 125 (246)
T 3of1_A 83 MYNSPR-------AATVVATSDCLLWALDRLTFRKILLGSSFKKRLMYDD 125 (246)
T ss_dssp HHTCCC-------SSEEEESSCEEEEEEEHHHHHHTTTTTTSHHHHHSHH
T ss_pred hcCCCC-------CcEEEECCCeEEEEEEhHHHHHHHHHhHHHHHHHHHH
Confidence 666766 8999999999999999999999999887655444333
No 40
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.57 E-value=2.6e-15 Score=146.71 Aligned_cols=121 Identities=25% Similarity=0.408 Sum_probs=107.6
Q ss_pred hccCCCCCCCcHHHHHHHHhhcceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEee-CCCeeEE--EecCCCeecHHhH
Q 037278 231 AGHVPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTT-NRKRTGV--YLQAGDFFGEELL 307 (449)
Q Consensus 231 ~s~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~-~~G~e~~--~l~~Gd~fGE~~l 307 (449)
...+++|.+++++.+..++..++.+.|++|++|+++||+++.+|+|.+|.++++... ++|++.+ .+++||+|||.++
T Consensus 159 l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~~~~~l~~G~~fGe~~l 238 (299)
T 3shr_A 159 LKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVFLRTLGKGDWFGEKAL 238 (299)
T ss_dssp HTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCEEEEEEETTCEECGGGG
T ss_pred HhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcceEEEEcCCCCEeChHHH
Confidence 455788899999999999999999999999999999999999999999999999765 5777766 9999999999988
Q ss_pred HHhhccCCCCCCCCCcceEEEEecceEEEEEcHHHHHHHHHHcHHHHHHHHHHH
Q 037278 308 MWALETQSSSENLPISTRTVRTLTEVEGLALMADDLKFAASRFRQMNGEQLEHI 361 (449)
Q Consensus 308 ~~~l~~~~~~~~~p~s~~tv~Alt~t~l~~L~~~df~~ll~~~~~l~~~~l~~~ 361 (449)
+.+.|+ +++++|.++|+++.|++++|.+++.++|.+..+.++..
T Consensus 239 ---l~~~~~-------~~tv~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l 282 (299)
T 3shr_A 239 ---QGEDVR-------TANVIAAEAVTCLVIDRDSFKHLIGGLDDVSNKAYEDA 282 (299)
T ss_dssp ---SSSEEC-------SSEEEESSSEEEEEEEHHHHHHHHTTCCCCCHHHHHHH
T ss_pred ---hCCCCc-------ceEEEECCCEEEEEEeHHHHHHHHccHHHHHHHHHHHH
Confidence 676666 89999999999999999999999999877665554443
No 41
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.57 E-value=3.3e-14 Score=138.89 Aligned_cols=120 Identities=22% Similarity=0.247 Sum_probs=104.5
Q ss_pred HhccCCCCCCCcHHHHHHHHhhcceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeecHHhHHH
Q 037278 230 LAGHVPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFGEELLMW 309 (449)
Q Consensus 230 l~s~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fGE~~l~~ 309 (449)
+..++++|.++++++++.++..++.+.|++|++|+++||+++.+|||++|.++++. +|+....+.+|++|||.++
T Consensus 40 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~---~g~~~~~~~~G~~fGe~~l-- 114 (299)
T 3shr_A 40 AILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK---EGVKLCTMGPGKVFGELAI-- 114 (299)
T ss_dssp HHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEE---TTEEEEEECTTCEESCSGG--
T ss_pred HHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEE---CCEEEEEeCCCCeeeHhHH--
Confidence 34568999999999999999999999999999999999999999999999999862 4544339999999999988
Q ss_pred hhccCCCCCCCCCcceEEEEecceEEEEEcHHHHHHHHHHcHHHHHHHHHHHH
Q 037278 310 ALETQSSSENLPISTRTVRTLTEVEGLALMADDLKFAASRFRQMNGEQLEHIL 362 (449)
Q Consensus 310 ~l~~~~~~~~~p~s~~tv~Alt~t~l~~L~~~df~~ll~~~~~l~~~~l~~~~ 362 (449)
+.+.|+ ++|++|.++|+++.|++++|.+++.+++...........
T Consensus 115 -l~~~~~-------~~tv~a~~~~~l~~i~~~~~~~i~~~~~~~~~~~~~~~l 159 (299)
T 3shr_A 115 -LYNCTR-------TATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTEYMEFL 159 (299)
T ss_dssp -GTTTBC-------CSEEEESSCEEEEEECHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -hcCCCC-------CcEEEEcCCeEEEEEcHHHHHHHhhHhHHHHHHHHHHHH
Confidence 676665 899999999999999999999999998866555444433
No 42
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.56 E-value=2e-14 Score=135.53 Aligned_cols=113 Identities=19% Similarity=0.249 Sum_probs=100.9
Q ss_pred hccCCCCCCCcHHHHHHHHhhcceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEE-EecCCCeecHHhHHH
Q 037278 231 AGHVPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGV-YLQAGDFFGEELLMW 309 (449)
Q Consensus 231 ~s~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~-~l~~Gd~fGE~~l~~ 309 (449)
...+++|.+++++.+..++..++.+.|++|++|+++||+++.+|+|.+|.++++. ..++ .+ .+.+||+|||.++
T Consensus 127 l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~-~~~~--~~~~l~~g~~fGe~~~-- 201 (246)
T 3of1_A 127 LKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSK-KGQG--VINKLKDHDYFGEVAL-- 201 (246)
T ss_dssp HHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEE-TTTE--EEEEEETTCEECHHHH--
T ss_pred HhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEE-cCCc--eEEEcCCCCcccHHHH--
Confidence 3458999999999999999999999999999999999999999999999999984 3332 44 9999999999998
Q ss_pred hhccCCCCCCCCCcceEEEEecceEEEEEcHHHHHHHHHHcHHHHHH
Q 037278 310 ALETQSSSENLPISTRTVRTLTEVEGLALMADDLKFAASRFRQMNGE 356 (449)
Q Consensus 310 ~l~~~~~~~~~p~s~~tv~Alt~t~l~~L~~~df~~ll~~~~~l~~~ 356 (449)
+.+.|+ +++++|.++|+++.|++++|.+++..+|.+..+
T Consensus 202 -~~~~~~-------~~~v~a~~~~~~~~i~~~~f~~ll~~~~~~~~~ 240 (246)
T 3of1_A 202 -LNDLPR-------QATVTATKRTKVATLGKSGFQRLLGPAVDVLKL 240 (246)
T ss_dssp -HHTCBC-------SSEEEESSCEEEEEEEHHHHHHHCTTHHHHHHH
T ss_pred -hCCCCc-------ccEEEECCCEEEEEEeHHHHHHHhccHHHHHhc
Confidence 666766 899999999999999999999999998776543
No 43
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.55 E-value=4.6e-15 Score=127.61 Aligned_cols=107 Identities=16% Similarity=0.257 Sum_probs=96.2
Q ss_pred hccCCCCCCCcHHHHHHHHhhcceEEeC-CCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeecHHhHHH
Q 037278 231 AGHVPMFSDWNEQILSEMCDSLKQVLYT-AESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFGEELLMW 309 (449)
Q Consensus 231 ~s~v~lF~~l~~~~l~~L~~~l~~~~~~-~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fGE~~l~~ 309 (449)
..++++|..++++.++.++..++.+.|+ +|++|+++||+++.+|||.+|.++++ ..+|++ ..+.+|++||+.++
T Consensus 18 l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~--~~~g~~-~~l~~G~~fG~~~~-- 92 (134)
T 2d93_A 18 MHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEIS--HPDGKV-ENLFMGNSFGITPT-- 92 (134)
T ss_dssp HHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEE--CSSSCE-EEECTTCEESCCSS--
T ss_pred HhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEE--cCCCcE-EEecCCCccChhHh--
Confidence 3458999999999999999999999999 99999999999999999999999998 367776 46899999999988
Q ss_pred hhccCCCCCCCCCcceEE-EEecceEEEEEcHHHHHHHHHHc
Q 037278 310 ALETQSSSENLPISTRTV-RTLTEVEGLALMADDLKFAASRF 350 (449)
Q Consensus 310 ~l~~~~~~~~~p~s~~tv-~Alt~t~l~~L~~~df~~ll~~~ 350 (449)
+.+.++ .+++ +|+++|+++.|++++|.++++++
T Consensus 93 -~~~~~~-------~~~~~~a~~~~~~~~i~~~~~~~l~~~~ 126 (134)
T 2d93_A 93 -LDKQYM-------HGIVRTKVDDCQFVCIAQQDYWRILNHV 126 (134)
T ss_dssp -SCCEEC-------CSEEEESSSSEEEEEEEHHHHHHHSSCC
T ss_pred -cCCCcc-------eeEEEEEecceEEEEEeHHHHHHHHHHH
Confidence 666654 7788 99999999999999999998765
No 44
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.55 E-value=3.1e-14 Score=138.26 Aligned_cols=120 Identities=19% Similarity=0.243 Sum_probs=106.2
Q ss_pred hccCCCCCCCcHHHHHHHHhhcceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeecHHhHHHh
Q 037278 231 AGHVPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFGEELLMWA 310 (449)
Q Consensus 231 ~s~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fGE~~l~~~ 310 (449)
...+|+|.++++++++.++..++.+.|++|++|+++||+++.+|+|.+|.++++. +|+....+.+||+|||.++
T Consensus 41 l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~---~g~~~~~l~~G~~fGe~~l--- 114 (291)
T 2qcs_B 41 IEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV---NNEWATSVGEGGSFGELAL--- 114 (291)
T ss_dssp TTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEE---TTEEEEEECTTCEECGGGG---
T ss_pred HhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEE---CCeEEEEcCCCCccchHHH---
Confidence 3457889999999999999999999999999999999999999999999999984 5644339999999999988
Q ss_pred hccCCCCCCCCCcceEEEEecceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHH
Q 037278 311 LETQSSSENLPISTRTVRTLTEVEGLALMADDLKFAASRFRQMNGEQLEHILR 363 (449)
Q Consensus 311 l~~~~~~~~~p~s~~tv~Alt~t~l~~L~~~df~~ll~~~~~l~~~~l~~~~r 363 (449)
+.+.|+ +++++|.++|+++.|++++|.+++.++|.+....+....+
T Consensus 115 ~~~~~~-------~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (291)
T 2qcs_B 115 IYGTPR-------AATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYEEFLS 160 (291)
T ss_dssp TCCCBC-------SSEEEESSCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCC-------ceEEEECCCEEEEEEEhHHHHHHHhhhHHHHHHHHHHHHh
Confidence 676665 8999999999999999999999999998887766665554
No 45
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.53 E-value=5.6e-14 Score=144.81 Aligned_cols=114 Identities=13% Similarity=0.162 Sum_probs=104.4
Q ss_pred hccCCCCCCCcHHHHHHHHhhcceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEE--EecCCCeecHHhHH
Q 037278 231 AGHVPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGV--YLQAGDFFGEELLM 308 (449)
Q Consensus 231 ~s~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~--~l~~Gd~fGE~~l~ 308 (449)
..++++|++++++.++.|+..++.+.|++|++|+++||+++.+|+|++|.++++. ..+|++.+ .+.+|++|||.++
T Consensus 147 L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~-~~~G~~~~v~~l~~G~~fGe~al- 224 (416)
T 3tnp_B 147 CKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYV-KCDGVGRCVGNYDNRGSFGELAL- 224 (416)
T ss_dssp HTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEE-ECSSCEEEEEEEESCCEECGGGG-
T ss_pred HhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEE-ecCCCEEEEEEecCCCEEeeHHH-
Confidence 4568999999999999999999999999999999999999999999999999995 67787766 9999999999998
Q ss_pred HhhccCCCCCCCCCcceEEEEecceEEEEEcHHHHHHHHHHcHHHHH
Q 037278 309 WALETQSSSENLPISTRTVRTLTEVEGLALMADDLKFAASRFRQMNG 355 (449)
Q Consensus 309 ~~l~~~~~~~~~p~s~~tv~Alt~t~l~~L~~~df~~ll~~~~~l~~ 355 (449)
+.+.|+ ++|++|.++|+++.|++++|..++.+++....
T Consensus 225 --l~~~pr-------~atv~A~~d~~l~~i~r~~f~~ll~~~~~~~~ 262 (416)
T 3tnp_B 225 --MYNTPK-------AATITATSPGALWGLDRVTFRRIIVKNNAKKR 262 (416)
T ss_dssp --TSCCCC-------SSEEEESSSEEEEEEEHHHHHHHHHHHHHHHS
T ss_pred --hcCCCc-------ccEEEEccCeEEEEEeehhhhhhhhcchhHHH
Confidence 677776 99999999999999999999999999877654
No 46
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.52 E-value=1.5e-14 Score=147.27 Aligned_cols=123 Identities=17% Similarity=0.252 Sum_probs=108.8
Q ss_pred hccCCCCCCCcHHHHHHHHhhcceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCe-eE-E-EecCCCeecHHhH
Q 037278 231 AGHVPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKR-TG-V-YLQAGDFFGEELL 307 (449)
Q Consensus 231 ~s~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~-e~-~-~l~~Gd~fGE~~l 307 (449)
..++++|..++++++..++..++...|++|++|+++||+++.+|||.+|.+++++...+|+ +. + .+++||+|||.++
T Consensus 250 L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~~~v~~l~~Gd~fGe~al 329 (381)
T 4din_B 250 LSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVEVGRLGPSDYFGEIAL 329 (381)
T ss_dssp HHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCCCEEEEECTTCEECTTGG
T ss_pred hhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCceEEEEEeCCCCEechHHH
Confidence 4568999999999999999999999999999999999999999999999999996655554 33 3 9999999999998
Q ss_pred HHhhccCCCCCCCCCcceEEEEecceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHH
Q 037278 308 MWALETQSSSENLPISTRTVRTLTEVEGLALMADDLKFAASRFRQMNGEQLEHILR 363 (449)
Q Consensus 308 ~~~l~~~~~~~~~p~s~~tv~Alt~t~l~~L~~~df~~ll~~~~~l~~~~l~~~~r 363 (449)
+.+.|+ +++++|.++|+++.|++++|..++..+|.+..+.+++.-+
T Consensus 330 ---l~~~~r-------~~tv~A~~~~~ll~i~~~~f~~ll~~~~~i~~~~~~~~~~ 375 (381)
T 4din_B 330 ---LLNRPR-------AATVVARGPLKCVKLDRPRFERVLGPCSEILKRNIQRYNS 375 (381)
T ss_dssp ---GSCCBC-------SSEEEESSCBEEEEEEHHHHHHHHCCHHHHHHTTHHHHHH
T ss_pred ---hCCCCc-------eeEEEEcCCEEEEEEeHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 777776 8999999999999999999999999998887766655443
No 47
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.51 E-value=7.1e-14 Score=142.32 Aligned_cols=120 Identities=16% Similarity=0.206 Sum_probs=105.9
Q ss_pred hccCCCCCCCcHHHHHHHHhhcceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeecHHhHHHh
Q 037278 231 AGHVPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFGEELLMWA 310 (449)
Q Consensus 231 ~s~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fGE~~l~~~ 310 (449)
..++++|.++++++++.++..++.+.|++|++|+++||+++.+|+|.+|.++++. +|+....+.+|++|||.++
T Consensus 132 l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~---~~~~v~~l~~G~~fGe~al--- 205 (381)
T 4din_B 132 ISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYV---NGEWVTNISEGGSFGELAL--- 205 (381)
T ss_dssp HTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEE---TTEEEEEEESSCCBCGGGG---
T ss_pred HhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEE---CCeEeeeCCCCCEEEchHH---
Confidence 4568999999999999999999999999999999999999999999999999984 5554449999999999998
Q ss_pred hccCCCCCCCCCcceEEEEecceEEEEEcHHHHHHHHHHcHHHHHHHHHHHHH
Q 037278 311 LETQSSSENLPISTRTVRTLTEVEGLALMADDLKFAASRFRQMNGEQLEHILR 363 (449)
Q Consensus 311 l~~~~~~~~~p~s~~tv~Alt~t~l~~L~~~df~~ll~~~~~l~~~~l~~~~r 363 (449)
+.+.|+ ++|++|.++|+++.|++++|..++.+++....+.+....+
T Consensus 206 l~~~~r-------~atv~A~~~~~l~~i~~~~f~~ll~~~~~~~~~~~~~~L~ 251 (381)
T 4din_B 206 IYGTPR-------AATVKAKTDLKLWGIDRDSYRRILMGSTLRKRKMYEEFLS 251 (381)
T ss_dssp TSCCBC-------SSEEEESSSCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCc-------ceEEEECCCEEEEEEchHHHHHhhhhhhHHHHHHHHHHhh
Confidence 677766 8999999999999999999999999988776555444333
No 48
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.51 E-value=3.9e-14 Score=146.01 Aligned_cols=117 Identities=14% Similarity=0.243 Sum_probs=101.1
Q ss_pred ccCCCCCCCcHHHHHHHHhhcceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCC------CeeEE--EecCCCeec
Q 037278 232 GHVPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNR------KRTGV--YLQAGDFFG 303 (449)
Q Consensus 232 s~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~------G~e~~--~l~~Gd~fG 303 (449)
..+++|..++++++..++..++.+.|.+|++|+++||+++.+|||.+|.+++++...+ |++.+ .+++|++||
T Consensus 270 ~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~~l~~l~~G~~fG 349 (416)
T 3tnp_B 270 ESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVEIARCFRGQYFG 349 (416)
T ss_dssp GGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC------------CEEEEECTTCEES
T ss_pred hhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCceeEEEEeCCCCEec
Confidence 4478999999999999999999999999999999999999999999999999965554 66655 999999999
Q ss_pred HHhHHHhhccCCCCCCCCCcceEEEEecceEEEEEcHHHHHHHHHHcHHHHHHHH
Q 037278 304 EELLMWALETQSSSENLPISTRTVRTLTEVEGLALMADDLKFAASRFRQMNGEQL 358 (449)
Q Consensus 304 E~~l~~~l~~~~~~~~~p~s~~tv~Alt~t~l~~L~~~df~~ll~~~~~l~~~~l 358 (449)
|.++ +.+.|+ +++|+|+++|+++.|++++|.+++.++|.+..+.+
T Consensus 350 E~al---l~~~~r-------~~tv~A~~~~~ll~I~~~~f~~ll~~~p~i~~~~~ 394 (416)
T 3tnp_B 350 ELAL---VTNKPR-------AASAHAIGTVKCLAMDVQAFERLLGPCMEIMKRNI 394 (416)
T ss_dssp GGGG---TCCSCC-------SSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTCC-
T ss_pred HHHH---hCCCCc-------eeEEEEcCCeEEEEEEHHHHHHHhcchHHHHHHHH
Confidence 9999 777776 99999999999999999999999999887654443
No 49
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.41 E-value=9.8e-13 Score=136.57 Aligned_cols=113 Identities=14% Similarity=0.170 Sum_probs=98.6
Q ss_pred hccCCCCCCCcHHHHHHHHhhcce-EEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEE-EecCCCeecHHhHH
Q 037278 231 AGHVPMFSDWNEQILSEMCDSLKQ-VLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGV-YLQAGDFFGEELLM 308 (449)
Q Consensus 231 ~s~v~lF~~l~~~~l~~L~~~l~~-~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~-~l~~Gd~fGE~~l~ 308 (449)
..++++|.+++++.++.++..++. +.|++|++|+++||+++.+|||.+|.++++. +|+..+ .+.+||+|||.++
T Consensus 339 l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~---~~~~~~~~l~~G~~fGe~~l- 414 (469)
T 1o7f_A 339 LLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVI---YGKGVVCTLHEGDDFGKLAL- 414 (469)
T ss_dssp HTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEE---TTTEEEEEEETTCEECGGGG-
T ss_pred HhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEE---cCCeeEEEecCCCEEEEehh-
Confidence 456999999999999999999985 5999999999999999999999999999984 233344 9999999999998
Q ss_pred HhhccCCCCCCCCCcceEEEEec-ceEEEEEcHHHHHHHHHHcHHHHHH
Q 037278 309 WALETQSSSENLPISTRTVRTLT-EVEGLALMADDLKFAASRFRQMNGE 356 (449)
Q Consensus 309 ~~l~~~~~~~~~p~s~~tv~Alt-~t~l~~L~~~df~~ll~~~~~l~~~ 356 (449)
+.+.|+ ++|++|++ +|+++.|++++|.+++.++|.+..+
T Consensus 415 --l~~~~~-------~~tv~a~~~~~~~~~i~~~~f~~ll~~~p~~~~~ 454 (469)
T 1o7f_A 415 --VNDAPR-------AASIVLREDNCHFLRVDKEDFNRILRDVEANTVR 454 (469)
T ss_dssp --TCCSCC-------SSEEEESSSSEEEEEEEHHHHHHHHHHTTCC---
T ss_pred --hcCCCc-------eEEEEEecCCEEEEEEcHHHHHHHHHHChHHHHH
Confidence 777776 99999998 7999999999999999998776543
No 50
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.34 E-value=5.9e-12 Score=143.03 Aligned_cols=112 Identities=20% Similarity=0.265 Sum_probs=98.8
Q ss_pred hccCCCCCCCcHHHHHHHHhhcceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCC--CeeE-E-EecCCCeecHHh
Q 037278 231 AGHVPMFSDWNEQILSEMCDSLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNR--KRTG-V-YLQAGDFFGEEL 306 (449)
Q Consensus 231 ~s~v~lF~~l~~~~l~~L~~~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~--G~e~-~-~l~~Gd~fGE~~ 306 (449)
...+++|+++++.++.+||..++...|++|++|+++||+++.+|+|++|.|.++....+ +.+. + .+.+|+.||| +
T Consensus 44 Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~~~~~~~~~v~~l~~G~sFGE-a 122 (999)
T 4f7z_A 44 LKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTAFGE-S 122 (999)
T ss_dssp HTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSSSCTTSCEEEEEEETTCEECG-G
T ss_pred HhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecCCCCCCceeEEEecCCcchhh-h
Confidence 35689999999999999999999999999999999999999999999999999854322 2233 3 8999999999 5
Q ss_pred HHHhhccCCCCCCCCCcceEEEEecceEEEEEcHHHHHHHHHHcHHH
Q 037278 307 LMWALETQSSSENLPISTRTVRTLTEVEGLALMADDLKFAASRFRQM 353 (449)
Q Consensus 307 l~~~l~~~~~~~~~p~s~~tv~Alt~t~l~~L~~~df~~ll~~~~~l 353 (449)
+ +.+.|+ ++||+|.++|++++|++++|..++.++|..
T Consensus 123 l---l~n~pR-------taTv~a~~~s~l~~l~r~~F~~i~~~~~e~ 159 (999)
T 4f7z_A 123 I---LDNTPR-------HATIVTRESSELLRIEQEDFKALWEKYRQY 159 (999)
T ss_dssp G---GGTCCC-------SSEEEESSSEEEEEEEHHHHHHHHHHHHHH
T ss_pred h---ccCCCc-------ceEEEeccceEEEEEEHHHHHHHHHhChHH
Confidence 6 676776 999999999999999999999999988763
No 51
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.29 E-value=7.7e-12 Score=136.72 Aligned_cols=110 Identities=15% Similarity=0.195 Sum_probs=97.7
Q ss_pred hccCCCCCCCcHHHHHHHHhhcc-eEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEE-EecCCCeecHHhHH
Q 037278 231 AGHVPMFSDWNEQILSEMCDSLK-QVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGV-YLQAGDFFGEELLM 308 (449)
Q Consensus 231 ~s~v~lF~~l~~~~l~~L~~~l~-~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~-~l~~Gd~fGE~~l~ 308 (449)
..++++|.++++++++.++..+. .+.|++|++|+++||+++.+|+|++|.|+++.. |+..+ .+.+||+|||.++
T Consensus 34 L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~~---g~~il~~l~~Gd~fGe~al- 109 (694)
T 3cf6_E 34 LLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIY---GKGVVCTLHEGDDFGKLAL- 109 (694)
T ss_dssp HTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEET---TTEEEEEEETTCEECHHHH-
T ss_pred HHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEEe---CCEEEEEeCCCCEeehHHH-
Confidence 45799999999999999999998 789999999999999999999999999999842 33444 9999999999988
Q ss_pred HhhccCCCCCCCCCcceEEEEec-ceEEEEEcHHHHHHHHHHcHHH
Q 037278 309 WALETQSSSENLPISTRTVRTLT-EVEGLALMADDLKFAASRFRQM 353 (449)
Q Consensus 309 ~~l~~~~~~~~~p~s~~tv~Alt-~t~l~~L~~~df~~ll~~~~~l 353 (449)
+.+.++ +++++|++ +|+++.|++++|.++++++|.+
T Consensus 110 --~~~~~~-------~~tv~A~edd~~ll~I~~~~f~~ll~~~p~l 146 (694)
T 3cf6_E 110 --VNDAPR-------AASIVLREDNCHFLRVDKEDFNRILRDVEAN 146 (694)
T ss_dssp --HHTCBC-------SSEEEECSSSEEEEEEEHHHHHHHTTTTCCC
T ss_pred --hCCCCc-------eEEEEEeeCceEEEEEeHHHHHHHHHHCHHH
Confidence 566665 89999999 5999999999999999977653
No 52
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.18 E-value=8.5e-11 Score=133.52 Aligned_cols=107 Identities=15% Similarity=0.175 Sum_probs=94.4
Q ss_pred hccCCCCCCCcHHHHHHHHhhcceEE-eCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEE-EecCCCeecHHhHH
Q 037278 231 AGHVPMFSDWNEQILSEMCDSLKQVL-YTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGV-YLQAGDFFGEELLM 308 (449)
Q Consensus 231 ~s~v~lF~~l~~~~l~~L~~~l~~~~-~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~-~l~~Gd~fGE~~l~ 308 (449)
..++|.|.+++...+..|+..+.... +++|++|++|||.++.+|||++|.|++++ +++..+ .+++||+|||.++
T Consensus 339 L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~---~~~~~v~~L~~Gd~FGElAL- 414 (999)
T 4f7z_A 339 LLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVI---YGKGVVCTLHEGDDFGKLAL- 414 (999)
T ss_dssp HTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEE---TTTEEEEEEETTCEECGGGG-
T ss_pred HHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEE---cCCcceEEecCCCcccchhh-
Confidence 45699999999999999999998654 57899999999999999999999999983 233334 8999999999999
Q ss_pred HhhccCCCCCCCCCcceEEEEecc-eEEEEEcHHHHHHHHHHc
Q 037278 309 WALETQSSSENLPISTRTVRTLTE-VEGLALMADDLKFAASRF 350 (449)
Q Consensus 309 ~~l~~~~~~~~~p~s~~tv~Alt~-t~l~~L~~~df~~ll~~~ 350 (449)
+.+.|+ .+|++|.++ |+++++++++|.+++.+-
T Consensus 415 --L~~~PR-------~aTV~a~~d~c~fl~i~k~df~~il~~~ 448 (999)
T 4f7z_A 415 --VNDAPR-------AASIVLREDNCHFLRVDKEDGNRILRDV 448 (999)
T ss_dssp --TCSCBC-------SSEEEESSSSEEEEEEEHHHHHHHHHHH
T ss_pred --ccCCCe-------eEEEEEecCceEEEEeeHHHHHHHHhHH
Confidence 888887 999999985 999999999999999863
No 53
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=97.81 E-value=1.4e-05 Score=74.63 Aligned_cols=51 Identities=12% Similarity=0.105 Sum_probs=43.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhheeEeccceeecChHHHHHhcccccchhhhhhccCcchhh
Q 037278 102 LGTTIIAIRSVLDLFYIIYIILRLRISSLLAGNLHKTVRESAIKYFMGFFTIDLVAILPLPQVV 165 (449)
Q Consensus 102 ~~~~~~v~~~i~D~~f~~DIil~F~T~~~~~G~lV~d~k~Ia~~Ylk~~F~~Dlls~lP~~~i~ 165 (449)
....+.++|.++|++|.+|++++|.++. + .++|+|+ +++|++|++|+....
T Consensus 37 ~~~~l~~~d~~~~~iF~~e~~lr~~~~~--------~----~~~y~~~-~iiDllailP~~~~~ 87 (223)
T 1orq_C 37 YLVRLYLVDLILVIILWADYAYRAYKSG--------D----PAGYVKK-TLYEIPALVPAGLLA 87 (223)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHTTS--------C----HHHHHHH-HHHHCTTHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHcccc--------c----HHHHHHH-hHHHHHHHHHHHHHH
Confidence 4457888999999999999999999962 1 3799998 999999999986543
No 54
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=97.23 E-value=0.00032 Score=73.84 Aligned_cols=49 Identities=16% Similarity=0.373 Sum_probs=41.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhheeEeccceeecChHHHHHhcccc-cchhhhhhccCcch
Q 037278 103 GTTIIAIRSVLDLFYIIYIILRLRISSLLAGNLHKTVRESAIKYFMG-FFTIDLVAILPLPQ 163 (449)
Q Consensus 103 ~~~~~v~~~i~D~~f~~DIil~F~T~~~~~G~lV~d~k~Ia~~Ylk~-~F~~Dlls~lP~~~ 163 (449)
...+.+++.++.++|.+|++++|.++- + .++|+++ |.++|+++++|+..
T Consensus 238 ~~~l~~ie~i~~~iFtiE~ilR~~~~~--------~----k~~Y~ks~wniiDli~iip~~i 287 (514)
T 2r9r_B 238 TDPFFIVETLCIIWFSFEFLVRFFACP--------S----KAGFFTNIMNIIDIVAIIPYYV 287 (514)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHSS--------C----SSSSTTSHHHHHHHHTTHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhCC--------c----HHHHHhchhHHHHHHHHHHHHH
Confidence 456788999999999999999999842 1 2589999 89999999999743
No 55
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=95.01 E-value=0.051 Score=47.36 Aligned_cols=47 Identities=13% Similarity=0.111 Sum_probs=38.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhheeEeccceeecChHHHHHhcccccchhhhhhccCcc
Q 037278 103 GTTIIAIRSVLDLFYIIYIILRLRISSLLAGNLHKTVRESAIKYFMGFFTIDLVAILPLP 162 (449)
Q Consensus 103 ~~~~~v~~~i~D~~f~~DIil~F~T~~~~~G~lV~d~k~Ia~~Ylk~~F~~Dlls~lP~~ 162 (449)
...+..+|+++=++|.+|.++++-.+- | .++|+++ =++|++|++|+-
T Consensus 51 ~~~~~~id~~~~~iF~~Ey~lRl~~a~--------~----k~~f~~~-~iiDllailP~~ 97 (147)
T 2kyh_A 51 LVRLYLVDLILVIILWADYAYRAYKSG--------D----PAGYVKK-TLYEIPALVPAG 97 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT--------C----HHHHHHH-STTTHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC--------c----HHHHHHH-HHHHHHHHHHHH
Confidence 446778999999999999999998742 2 2478887 589999999974
No 56
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=94.78 E-value=0.054 Score=46.16 Aligned_cols=48 Identities=13% Similarity=0.094 Sum_probs=39.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhheeEeccceeecChHHHHHhcccccchhhhhhccCcc
Q 037278 102 LGTTIIAIRSVLDLFYIIYIILRLRISSLLAGNLHKTVRESAIKYFMGFFTIDLVAILPLP 162 (449)
Q Consensus 102 ~~~~~~v~~~i~D~~f~~DIil~F~T~~~~~G~lV~d~k~Ia~~Ylk~~F~~Dlls~lP~~ 162 (449)
....+..+|+++-++|.+|.++++-.+- | .++|++ |=++|+++++|.-
T Consensus 35 ~~~~l~~~d~~~~~iFt~E~~lRl~~~~--------~----~~~y~~-~niiDllailp~~ 82 (132)
T 1ors_C 35 YLVRLYLVDLILVIILWADYAYRAYKSG--------D----PAGYVK-KTLYEIPALVPAG 82 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT--------S----TTTTTT-TCGGGTGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCC--------C----HHHHHH-HHHHHHHHHHHHH
Confidence 3456778999999999999999998631 1 258999 9999999999963
No 57
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=91.48 E-value=0.47 Score=45.30 Aligned_cols=46 Identities=20% Similarity=0.374 Sum_probs=38.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhheeEeccceeecChHHHHHhcccc-cchhhhhhccCc
Q 037278 102 LGTTIIAIRSVLDLFYIIYIILRLRISSLLAGNLHKTVRESAIKYFMG-FFTIDLVAILPL 161 (449)
Q Consensus 102 ~~~~~~v~~~i~D~~f~~DIil~F~T~~~~~G~lV~d~k~Ia~~Ylk~-~F~~Dlls~lP~ 161 (449)
....+..++.++=++|.+|+++++... | ++|+++ |=++|+++++|.
T Consensus 59 ~~~~l~~~e~~~~~iF~~E~~lrl~~~----~----------~~y~~~~wn~~Dl~~v~~~ 105 (285)
T 3rvy_A 59 FGVYTTLFNQIVITIFTIEIILRIYVH----R----------ISFFKDPWSLFDFFVVAIS 105 (285)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHTT----G----------GGGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----h----------HHHHcCChHHhHHHHHHHH
Confidence 345677899999999999999998772 2 689998 899999987763
No 58
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=80.61 E-value=1.6 Score=26.56 Aligned_cols=20 Identities=35% Similarity=0.509 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 037278 368 EWRTWAASFIQAAWRRYIER 387 (449)
Q Consensus 368 ~~~~~~~~~iq~a~~r~~~r 387 (449)
+-++++|..||.||+++..+
T Consensus 3 k~Ee~aA~vIQrA~R~yl~~ 22 (27)
T 2kxw_B 3 KQEEVSAIVIQRAYRRYLLK 22 (27)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34689999999999999765
No 59
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=79.91 E-value=1.8 Score=27.20 Aligned_cols=22 Identities=27% Similarity=0.262 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 037278 368 EWRTWAASFIQAAWRRYIERKL 389 (449)
Q Consensus 368 ~~~~~~~~~iq~a~~r~~~r~~ 389 (449)
+-+++++..||.||+++..+..
T Consensus 3 k~Ee~aA~vIQrA~R~yl~rr~ 24 (31)
T 2l53_B 3 GSEEVSAMVIQRAFRRHLLQRS 24 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 4578999999999999976543
No 60
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=79.72 E-value=7.4 Score=35.59 Aligned_cols=68 Identities=9% Similarity=0.196 Sum_probs=52.8
Q ss_pred cceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeecHHhHHHhhccCCCCCCCCCcceEEEEec
Q 037278 252 LKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFGEELLMWALETQSSSENLPISTRTVRTLT 331 (449)
Q Consensus 252 l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fGE~~l~~~l~~~~~~~~~p~s~~tv~Alt 331 (449)
+....+.||+.+=..--+.+.+.+|++|.+++. . +|++. .+++||++= +.++ .++.++|.+
T Consensus 39 ~~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~-i--~~~~~-~l~~Gd~~~-------~p~~--------~~H~~~a~~ 99 (227)
T 3rns_A 39 ISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIF-I--ENNKK-TISNGDFLE-------ITAN--------HNYSIEARD 99 (227)
T ss_dssp EEEEEECTTCEEEECSCSSCEEEEEEESEEEEE-E--SSCEE-EEETTEEEE-------ECSS--------CCEEEEESS
T ss_pred EEEEEECCCCccCccccCCCEEEEEEeCEEEEE-E--CCEEE-EECCCCEEE-------ECCC--------CCEEEEECC
Confidence 345678999999887788999999999999987 2 34443 699999863 3322 278999999
Q ss_pred ceEEEEE
Q 037278 332 EVEGLAL 338 (449)
Q Consensus 332 ~t~l~~L 338 (449)
++.++.+
T Consensus 100 ~~~~l~i 106 (227)
T 3rns_A 100 NLKLIEI 106 (227)
T ss_dssp SEEEEEE
T ss_pred CcEEEEE
Confidence 9999877
No 61
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=78.13 E-value=11 Score=29.75 Aligned_cols=66 Identities=9% Similarity=0.122 Sum_probs=43.5
Q ss_pred eEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeecHHhHHHhhccCCCCCCCCCcceEEEEecce
Q 037278 254 QVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFGEELLMWALETQSSSENLPISTRTVRTLTEV 333 (449)
Q Consensus 254 ~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fGE~~l~~~l~~~~~~~~~p~s~~tv~Alt~t 333 (449)
...+.+|+.+-....+..++++|++|.+.+. . +|++. .+.+||.+= +.+. ..+.+.+.+++
T Consensus 42 ~~~~~~g~~~~~H~h~~~e~~~vl~G~~~~~-i--~~~~~-~l~~Gd~i~-------i~~~--------~~H~~~~~~~~ 102 (114)
T 2ozj_A 42 LFSFADGESVSEEEYFGDTLYLILQGEAVIT-F--DDQKI-DLVPEDVLM-------VPAH--------KIHAIAGKGRF 102 (114)
T ss_dssp EEEEETTSSCCCBCCSSCEEEEEEEEEEEEE-E--TTEEE-EECTTCEEE-------ECTT--------CCBEEEEEEEE
T ss_pred EEEECCCCccccEECCCCeEEEEEeCEEEEE-E--CCEEE-EecCCCEEE-------ECCC--------CcEEEEeCCCc
Confidence 3345677765544556789999999999976 2 34332 799999763 3322 15666777777
Q ss_pred EEEEE
Q 037278 334 EGLAL 338 (449)
Q Consensus 334 ~l~~L 338 (449)
.++.+
T Consensus 103 ~~~~i 107 (114)
T 2ozj_A 103 KMLQI 107 (114)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 76654
No 62
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=77.74 E-value=11 Score=30.23 Aligned_cols=66 Identities=14% Similarity=0.135 Sum_probs=46.7
Q ss_pred ceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeecHHhHHHhhccCCCCCCCCCcceEEEEecc
Q 037278 253 KQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFGEELLMWALETQSSSENLPISTRTVRTLTE 332 (449)
Q Consensus 253 ~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fGE~~l~~~l~~~~~~~~~p~s~~tv~Alt~ 332 (449)
....+++|+.+-..-.+..++++|++|.+++. . +|++ ..+.+||.+- +.+. ....+.+.++
T Consensus 39 ~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~-i--~~~~-~~l~~Gd~i~-------ip~~--------~~H~~~~~~~ 99 (114)
T 3fjs_A 39 MRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIG-V--DGAQ-RRLHQGDLLY-------LGAG--------AAHDVNAITN 99 (114)
T ss_dssp EEEEECTTCEEEEECCSSCEEEEEEESCEEEE-E--TTEE-EEECTTEEEE-------ECTT--------CCEEEEESSS
T ss_pred EEEEECCCCccCceeCCCcEEEEEEECEEEEE-E--CCEE-EEECCCCEEE-------ECCC--------CcEEEEeCCC
Confidence 45677888887665556679999999999986 2 3443 3799999864 3322 1678888888
Q ss_pred eEEEE
Q 037278 333 VEGLA 337 (449)
Q Consensus 333 t~l~~ 337 (449)
+.++.
T Consensus 100 ~~~~~ 104 (114)
T 3fjs_A 100 TSLLV 104 (114)
T ss_dssp EEEEE
T ss_pred cEEEE
Confidence 77554
No 63
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=72.54 E-value=26 Score=28.50 Aligned_cols=45 Identities=16% Similarity=0.192 Sum_probs=33.3
Q ss_pred eEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeec
Q 037278 254 QVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFG 303 (449)
Q Consensus 254 ~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fG 303 (449)
...+.||..+-.. ...+++++|++|.+++. . +|++. .+++||.+-
T Consensus 44 ~~~~~pG~~~~~H-~~~~E~~~Vl~G~~~~~-~--~g~~~-~l~~GD~v~ 88 (119)
T 3lwc_A 44 YGRYAPGQSLTET-MAVDDVMIVLEGRLSVS-T--DGETV-TAGPGEIVY 88 (119)
T ss_dssp EEEECTTCEEEEE-CSSEEEEEEEEEEEEEE-E--TTEEE-EECTTCEEE
T ss_pred EEEECCCCCcCcc-CCCCEEEEEEeCEEEEE-E--CCEEE-EECCCCEEE
Confidence 4567788765443 37889999999999987 2 45443 799999874
No 64
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=72.35 E-value=11 Score=33.40 Aligned_cols=58 Identities=21% Similarity=0.255 Sum_probs=39.6
Q ss_pred CcCeEEEEEEeEEEEEEeeCCCeeEE-EecCCCeecHHhHHHhhccCCCCCCCCCcceEEEEec-ceEEEEEcHHH
Q 037278 269 PVSEMFFITRGQLLTMKTTNRKRTGV-YLQAGDFFGEELLMWALETQSSSENLPISTRTVRTLT-EVEGLALMADD 342 (449)
Q Consensus 269 ~~~~myfI~~G~v~v~~~~~~G~e~~-~l~~Gd~fGE~~l~~~l~~~~~~~~~p~s~~tv~Alt-~t~l~~L~~~d 342 (449)
+.++++++++|.+.+- ..++|+... .+++||+|= +. ... ..+-++-+ ++..+.+.+..
T Consensus 54 ~~dE~FyvlkG~m~i~-v~d~g~~~~v~l~eGE~f~-------lP-~gv-------pH~P~r~~~e~~~lviE~~r 113 (174)
T 1yfu_A 54 PLEEFFYQLRGNAYLN-LWVDGRRERADLKEGDIFL-------LP-PHV-------RHSPQRPEAGSACLVIERQR 113 (174)
T ss_dssp SSCEEEEEEESCEEEE-EEETTEEEEEEECTTCEEE-------EC-TTC-------CEEEEBCCTTCEEEEEEECC
T ss_pred CCceEEEEEeeEEEEE-EEcCCceeeEEECCCCEEE-------eC-CCC-------CcCccccCCCCEEEEEEeCC
Confidence 5789999999999987 344564444 899999984 32 222 55666666 77777765543
No 65
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=70.04 E-value=5.5 Score=35.13 Aligned_cols=52 Identities=12% Similarity=0.160 Sum_probs=37.9
Q ss_pred cceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeec
Q 037278 252 LKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFG 303 (449)
Q Consensus 252 l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fG 303 (449)
+....+.||......-...+++++|++|.+++...+.+|.+...+++||.+-
T Consensus 43 ~~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v~~~~~~~~~~l~~GDv~~ 94 (178)
T 1dgw_A 43 VLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRDTYKLDQGDAIK 94 (178)
T ss_dssp EEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETTEEEEEEEETTEEEE
T ss_pred EEEEEecCCcEecCcCCCCCEEEEEEeEEEEEEEEeCCCcEEEEECCCCEEE
Confidence 4456778887664443446899999999999885555555444899999864
No 66
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=69.15 E-value=26 Score=27.44 Aligned_cols=67 Identities=12% Similarity=0.101 Sum_probs=44.4
Q ss_pred ceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeecHHhHHHhhccCCCCCCCCCcceEEEEecc
Q 037278 253 KQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFGEELLMWALETQSSSENLPISTRTVRTLTE 332 (449)
Q Consensus 253 ~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fGE~~l~~~l~~~~~~~~~p~s~~tv~Alt~ 332 (449)
....+.||..+-.---+..++++|++|.+.+. . +|++ ..+.+||.+- +.+. ......+.++
T Consensus 43 ~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~-~--~~~~-~~l~~Gd~~~-------ip~~--------~~H~~~~~~~ 103 (115)
T 1yhf_A 43 TVFSLDKGQEIGRHSSPGDAMVTILSGLAEIT-I--DQET-YRVAEGQTIV-------MPAG--------IPHALYAVEA 103 (115)
T ss_dssp EEEEECTTCEEEEECCSSEEEEEEEESEEEEE-E--TTEE-EEEETTCEEE-------ECTT--------SCEEEEESSC
T ss_pred EEEEECCCCccCCEECCCcEEEEEEeCEEEEE-E--CCEE-EEECCCCEEE-------ECCC--------CCEEEEECCC
Confidence 34567788766433334679999999999886 2 3433 2799999864 3322 1567777777
Q ss_pred eEEEEE
Q 037278 333 VEGLAL 338 (449)
Q Consensus 333 t~l~~L 338 (449)
++++.+
T Consensus 104 ~~~~~v 109 (115)
T 1yhf_A 104 FQMLLV 109 (115)
T ss_dssp EEEEEE
T ss_pred ceEEEE
Confidence 776654
No 67
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=68.42 E-value=15 Score=30.35 Aligned_cols=45 Identities=20% Similarity=0.153 Sum_probs=32.0
Q ss_pred EEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeec
Q 037278 255 VLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFG 303 (449)
Q Consensus 255 ~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fG 303 (449)
...+||..-.+..+ .+++++|++|.+.+. .++|+.. .+++||.+-
T Consensus 54 w~~~pG~~~~~~~~-~~E~~~Vl~G~~~l~--~~~g~~~-~l~~GD~~~ 98 (123)
T 3bcw_A 54 WESTSGSFQSNTTG-YIEYCHIIEGEARLV--DPDGTVH-AVKAGDAFI 98 (123)
T ss_dssp EEEEEEEEECCCTT-EEEEEEEEEEEEEEE--CTTCCEE-EEETTCEEE
T ss_pred EEECCCceeeEcCC-CcEEEEEEEEEEEEE--ECCCeEE-EECCCCEEE
Confidence 45566766655433 389999999999986 3455443 799999875
No 68
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=68.38 E-value=12 Score=33.09 Aligned_cols=84 Identities=18% Similarity=0.280 Sum_probs=51.7
Q ss_pred HHHHHHHhhcce----EEeCCCCEEec-CC----------CCcCeEEEEEEeEEEEEEeeCCC----eeEE-EecCCCee
Q 037278 243 QILSEMCDSLKQ----VLYTAESYIQQ-EG----------DPVSEMFFITRGQLLTMKTTNRK----RTGV-YLQAGDFF 302 (449)
Q Consensus 243 ~~l~~L~~~l~~----~~~~~ge~I~~-eG----------d~~~~myfI~~G~v~v~~~~~~G----~e~~-~l~~Gd~f 302 (449)
+-+++....+++ +..-.+++++. -| ++.++++++++|.+.+-.. ++| +... .+++||+|
T Consensus 12 ~wl~e~~~~~~PPV~Nk~v~~~~~~V~~vgGPn~r~D~H~~~~eE~Fy~lkG~m~l~v~-d~g~~~~~~~dv~i~eGdmf 90 (176)
T 1zvf_A 12 KWLKENEGLLKPPVNNYCLHKGGFTVMIVGGPNERTDYHINPTPEWFYQKKGSMLLKVV-DETDAEPKFIDIIINEGDSY 90 (176)
T ss_dssp HHHHHHGGGGSSSSCEEEEECSSEEEEEECSSBCCSCEEECSSCEEEEEEESCEEEEEE-ECSSSSCEEEEEEECTTEEE
T ss_pred HHHHHhHhhcCCCcCCEEEecCCEEEEEEcCCCcCCcCcCCCCceEEEEEeCEEEEEEE-cCCCcccceeeEEECCCCEE
Confidence 345566666666 43333555432 22 3456999999999998843 445 2222 89999998
Q ss_pred cHHhHHHhhccCCCCCCCCCcceEEEEecceEEEEEcHHH
Q 037278 303 GEELLMWALETQSSSENLPISTRTVRTLTEVEGLALMADD 342 (449)
Q Consensus 303 GE~~l~~~l~~~~~~~~~p~s~~tv~Alt~t~l~~L~~~d 342 (449)
= +.++ . +++-++-+++..+.+.+..
T Consensus 91 l-------lP~g-v-------pHsP~r~~e~v~lviErkR 115 (176)
T 1zvf_A 91 L-------LPGN-V-------PHSPVRFADTVGIVVEQDR 115 (176)
T ss_dssp E-------ECTT-C-------CEEEEECTTCEEEEEEECC
T ss_pred E-------cCCC-C-------CcCCcccCCcEEEEEEecC
Confidence 4 3322 1 5566566778777776543
No 69
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=67.84 E-value=5.3 Score=36.42 Aligned_cols=49 Identities=18% Similarity=0.297 Sum_probs=32.8
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhheeEeccceeecChHHHHHhcccc-cchhhhhhccC
Q 037278 100 KALGTTIIAIRSVLDLFYIIYIILRLRISSLLAGNLHKTVRESAIKYFMG-FFTIDLVAILP 160 (449)
Q Consensus 100 ~~~~~~~~v~~~i~D~~f~~DIil~F~T~~~~~G~lV~d~k~Ia~~Ylk~-~F~~Dlls~lP 160 (449)
......+..++.++=++|.+|+++++-.. | -.++|+++ |=++|+++++|
T Consensus 38 ~~~~~~l~~~e~~~~~iF~~E~~lri~~~----~--------~~~~y~~~~wni~D~~~v~~ 87 (229)
T 4dxw_A 38 PLFLETIHLLDYGITIFFVIEILIRFIGE----K--------QKADFFKSGWNIFDTVIVAI 87 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC---------------------CHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHc----C--------chhHHhcCCcHHHHHHHHHH
Confidence 34445677899999999999999998762 1 13689988 88999877665
No 70
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=64.00 E-value=39 Score=26.40 Aligned_cols=67 Identities=12% Similarity=0.060 Sum_probs=44.7
Q ss_pred ceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeecHHhHHHhhccCCCCCCCCCcceEEEEecc
Q 037278 253 KQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFGEELLMWALETQSSSENLPISTRTVRTLTE 332 (449)
Q Consensus 253 ~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fGE~~l~~~l~~~~~~~~~p~s~~tv~Alt~ 332 (449)
....+.||..+-.---+..++++|++|.+.+. . +|++ ..+.+||.+= +.+. ....+.+.++
T Consensus 37 ~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~-~--~~~~-~~l~~Gd~~~-------ip~~--------~~H~~~~~~~ 97 (116)
T 2pfw_A 37 VKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVN-V--DGVI-KVLTAGDSFF-------VPPH--------VDHGAVCPTG 97 (116)
T ss_dssp EEEEECTTEEEEEECCSSEEEEEEEEECEEEE-E--TTEE-EEECTTCEEE-------ECTT--------CCEEEEESSC
T ss_pred EEEEECCCCcCCcEECCcceEEEEEeeEEEEE-E--CCEE-EEeCCCCEEE-------ECcC--------CceeeEeCCC
Confidence 44567788765332334678999999999886 2 4433 3799999853 3322 1677777778
Q ss_pred eEEEEE
Q 037278 333 VEGLAL 338 (449)
Q Consensus 333 t~l~~L 338 (449)
++++.+
T Consensus 98 ~~~l~v 103 (116)
T 2pfw_A 98 GILIDT 103 (116)
T ss_dssp EEEEEE
T ss_pred cEEEEE
Confidence 877766
No 71
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=60.85 E-value=30 Score=30.23 Aligned_cols=49 Identities=14% Similarity=0.196 Sum_probs=31.8
Q ss_pred eEEeCCCCEEe---cCCCCcCeEEEEEEeEEEEEEeeCCCe-eEEEecCCCeec
Q 037278 254 QVLYTAESYIQ---QEGDPVSEMFFITRGQLLTMKTTNRKR-TGVYLQAGDFFG 303 (449)
Q Consensus 254 ~~~~~~ge~I~---~eGd~~~~myfI~~G~v~v~~~~~~G~-e~~~l~~Gd~fG 303 (449)
...+.||...- .-..+..++++|++|.+++. ..++|. +...+.+||.+-
T Consensus 121 ~~~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~-~~~~~~~~~~~l~~GD~~~ 173 (198)
T 2bnm_A 121 VVDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMK-WGDKENPKEALLPTGASMF 173 (198)
T ss_dssp EEEECCCCGGGCCCCCCCSSCEEEEEEESCEEEE-ESCTTSCEEEEECTTCEEE
T ss_pred EEEEcCCCCCcccccccCCCeEEEEEEeeeEEEE-ECCcCCcccEEECCCCEEE
Confidence 34667776543 22334579999999999987 332222 222899999874
No 72
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=60.59 E-value=19 Score=34.30 Aligned_cols=62 Identities=13% Similarity=0.242 Sum_probs=44.1
Q ss_pred CCCcCeEEEEEEeEEEEEEeeCCCeeEE-EecCCCeecHHhHHHhhccCCCCCCCCCcceEEEEecceEEEEEcHHHHH
Q 037278 267 GDPVSEMFFITRGQLLTMKTTNRKRTGV-YLQAGDFFGEELLMWALETQSSSENLPISTRTVRTLTEVEGLALMADDLK 344 (449)
Q Consensus 267 Gd~~~~myfI~~G~v~v~~~~~~G~e~~-~l~~Gd~fGE~~l~~~l~~~~~~~~~p~s~~tv~Alt~t~l~~L~~~df~ 344 (449)
-+..++++++++|.+.+-.. ++|+... .+++|++|= -+... +++=++-++|..+.|.+..-.
T Consensus 48 ~~~~dE~FyqlkG~m~l~~~-d~g~~~~V~i~eGemfl--------lP~gv-------~HsP~r~~et~gLviE~~R~~ 110 (286)
T 2qnk_A 48 IEEGEEVFYQLEGDMVLRVL-EQGKHRDVVIRQGEIFL--------LPARV-------PHSPQRFANTVGLVVERRRLE 110 (286)
T ss_dssp ECSSCEEEEEEESCEEEEEE-ETTEEEEEEECTTEEEE--------ECTTC-------CEEEEECTTCEEEEEEECCCT
T ss_pred CCCCCeEEEEEeCeEEEEEE-eCCceeeEEECCCeEEE--------eCCCC-------CcCCcccCCeEEEEEeecCCC
Confidence 45688999999999998744 4564333 899999873 33322 566677888888888765443
No 73
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=60.06 E-value=61 Score=25.45 Aligned_cols=65 Identities=12% Similarity=0.090 Sum_probs=43.1
Q ss_pred cceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeecHHhHHHhhccCCCCCCCCCcceEEEEec
Q 037278 252 LKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFGEELLMWALETQSSSENLPISTRTVRTLT 331 (449)
Q Consensus 252 l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fGE~~l~~~l~~~~~~~~~p~s~~tv~Alt 331 (449)
.....+++|+.-.. -+..++++|++|.+.+. .++|++. .+++||.+- +.+. .+.+.++.+
T Consensus 33 ~~~~~~~pg~~~~h--H~~~E~~~Vl~G~~~~~--i~~g~~~-~l~~GD~i~-------ip~g--------~~H~~~n~~ 92 (101)
T 1o5u_A 33 WPIWEKEVSEFDWY--YDTNETCYILEGKVEVT--TEDGKKY-VIEKGDLVT-------FPKG--------LRCRWKVLE 92 (101)
T ss_dssp SCEEEECSEEEEEE--CSSCEEEEEEEEEEEEE--ETTCCEE-EEETTCEEE-------ECTT--------CEEEEEEEE
T ss_pred EEEEEeCCCccccc--CCceEEEEEEeCEEEEE--ECCCCEE-EECCCCEEE-------ECCC--------CcEEEEeCC
Confidence 44667788876554 44789999999999987 2324433 799999874 3322 156666666
Q ss_pred ceEEE
Q 037278 332 EVEGL 336 (449)
Q Consensus 332 ~t~l~ 336 (449)
++...
T Consensus 93 ~~~~~ 97 (101)
T 1o5u_A 93 PVRKH 97 (101)
T ss_dssp EEEEE
T ss_pred CeeEE
Confidence 65443
No 74
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=59.66 E-value=31 Score=31.25 Aligned_cols=68 Identities=9% Similarity=0.097 Sum_probs=48.1
Q ss_pred cceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeecHHhHHHhhccCCCCCCCCCcceEEEE-e
Q 037278 252 LKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFGEELLMWALETQSSSENLPISTRTVRT-L 330 (449)
Q Consensus 252 l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fGE~~l~~~l~~~~~~~~~p~s~~tv~A-l 330 (449)
+....++||+.+-..--+.+++++|++|.+++. . +|++. .+.+||.+= +.+. .+..+.+ .
T Consensus 155 ~~~~~~~~G~~~~~H~H~~~e~~~Vl~G~~~~~-i--~g~~~-~l~~Gd~i~-------ip~~--------~~H~~~~~~ 215 (227)
T 3rns_A 155 MTIMSFWKGESLDPHKAPGDALVTVLDGEGKYY-V--DGKPF-IVKKGESAV-------LPAN--------IPHAVEAET 215 (227)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEEEEEEE-E--TTEEE-EEETTEEEE-------ECTT--------SCEEEECCS
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeEEEEEE-E--CCEEE-EECCCCEEE-------ECCC--------CcEEEEeCC
Confidence 346788999987655556778999999999986 2 34433 799999863 3322 1677888 8
Q ss_pred cceEEEEE
Q 037278 331 TEVEGLAL 338 (449)
Q Consensus 331 t~t~l~~L 338 (449)
++++++.+
T Consensus 216 ~~~~~ll~ 223 (227)
T 3rns_A 216 ENFKMLLI 223 (227)
T ss_dssp SCEEEEEE
T ss_pred CCEEEEEE
Confidence 88776643
No 75
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=57.98 E-value=12 Score=30.84 Aligned_cols=45 Identities=13% Similarity=0.178 Sum_probs=32.3
Q ss_pred EEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeec
Q 037278 255 VLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFG 303 (449)
Q Consensus 255 ~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fG 303 (449)
-..+||..-.... ..++++.|++|.+.+. .++|... .+++||.+-
T Consensus 47 We~tPG~~~~~~~-~~~E~~~iLeG~~~lt--~ddG~~~-~l~aGD~~~ 91 (116)
T 3es4_A 47 WMAEPGIYNYAGR-DLEETFVVVEGEALYS--QADADPV-KIGPGSIVS 91 (116)
T ss_dssp EEECSEEEEECCC-SEEEEEEEEECCEEEE--ETTCCCE-EECTTEEEE
T ss_pred EecCCceeECeeC-CCcEEEEEEEeEEEEE--eCCCeEE-EECCCCEEE
Confidence 3566776655543 3469999999999986 4556533 799999875
No 76
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=55.87 E-value=47 Score=26.40 Aligned_cols=77 Identities=17% Similarity=0.162 Sum_probs=48.0
Q ss_pred cceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeecHHhHHHhhccCCCCCCCCCcceEEEEec
Q 037278 252 LKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFGEELLMWALETQSSSENLPISTRTVRTLT 331 (449)
Q Consensus 252 l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fGE~~l~~~l~~~~~~~~~p~s~~tv~Alt 331 (449)
+....+.||..+-..--+..++++|++|.+++.. +|++ ..+.+||.+- +.+. ..+.+.+.+
T Consensus 43 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~---~~~~-~~l~~Gd~~~-------ip~~--------~~H~~~~~~ 103 (126)
T 4e2g_A 43 LNWVRIEPNTEMPAHEHPHEQAGVMLEGTLELTI---GEET-RVLRPGMAYT-------IPGG--------VRHRARTFE 103 (126)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEECEEEEE---TTEE-EEECTTEEEE-------ECTT--------CCEEEECCT
T ss_pred EEEEEECCCCcCCCccCCCceEEEEEEeEEEEEE---CCEE-EEeCCCCEEE-------ECCC--------CcEEeEECC
Confidence 3456777887764444446889999999999862 3333 3799999863 3322 156677766
Q ss_pred c-eEEEEE---cHHHHHHHH
Q 037278 332 E-VEGLAL---MADDLKFAA 347 (449)
Q Consensus 332 ~-t~l~~L---~~~df~~ll 347 (449)
+ +.++.+ +++++...+
T Consensus 104 ~~~~~l~v~~p~~~d~~~~~ 123 (126)
T 4e2g_A 104 DGCLVLDIFSPPREDYARMA 123 (126)
T ss_dssp TCEEEEEEEESCCHHHHHHH
T ss_pred CCEEEEEEECCCCcchhhhh
Confidence 6 555433 345555443
No 77
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=55.14 E-value=24 Score=28.24 Aligned_cols=49 Identities=14% Similarity=0.062 Sum_probs=32.8
Q ss_pred cceEEeCCCCEEecCCCC-cCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeec
Q 037278 252 LKQVLYTAESYIQQEGDP-VSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFG 303 (449)
Q Consensus 252 l~~~~~~~ge~I~~eGd~-~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fG 303 (449)
+....+.||..+-..--+ ..++++|++|.+++. ..+|++. .+++||.+-
T Consensus 41 ~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~--~~~~~~~-~l~~Gd~~~ 90 (125)
T 3h8u_A 41 VVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYH--QGNGIVT-HLKAGDIAI 90 (125)
T ss_dssp EEEEEECTTCEECCC-CTTCEEEEEEEECEEEEE--CSTTCEE-EEETTEEEE
T ss_pred EEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEE--ECCCeEE-EeCCCCEEE
Confidence 344667888776544444 368899999999875 2244443 689999763
No 78
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=53.43 E-value=20 Score=30.58 Aligned_cols=63 Identities=8% Similarity=0.129 Sum_probs=42.3
Q ss_pred ecCCCCcCeEEEEEEeEEEEEEeeC-CC---eeEEEecCCCeecHHhHHHhhccCCCCCCCCCcceEEEEecceEEEEEc
Q 037278 264 QQEGDPVSEMFFITRGQLLTMKTTN-RK---RTGVYLQAGDFFGEELLMWALETQSSSENLPISTRTVRTLTEVEGLALM 339 (449)
Q Consensus 264 ~~eGd~~~~myfI~~G~v~v~~~~~-~G---~e~~~l~~Gd~fGE~~l~~~l~~~~~~~~~p~s~~tv~Alt~t~l~~L~ 339 (449)
++.-+..|++|+|++|.+.+..... ++ ...+.+++|+++- -|+.. .++-.|.++|.++.+.
T Consensus 44 ~h~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d~~V~l~~Ge~yv--------VPkGv-------eH~p~a~~e~~vLLiE 108 (140)
T 3d0j_A 44 LEIHHSTDEQFILSAGKAILITAEKENDKFNIELTLMEKGKVYN--------VPAEC-------WFYSITQKDTKMMYVQ 108 (140)
T ss_dssp EEEESSCCEEEEEEESCEEEEEEEEETTEEEEEEEECCTTCCEE--------ECTTC-------EEEEEECTTCEEEEEE
T ss_pred hccCCCCCeEEEEEecEEEEEEecCcCCCCccceEEecCCCEEE--------eCCCc-------cCcccCCCceEEEEEE
Confidence 4455678999999999999874321 11 1122899999874 22322 6677778888888876
Q ss_pred HH
Q 037278 340 AD 341 (449)
Q Consensus 340 ~~ 341 (449)
..
T Consensus 109 p~ 110 (140)
T 3d0j_A 109 DS 110 (140)
T ss_dssp ES
T ss_pred eC
Confidence 54
No 79
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=53.38 E-value=22 Score=34.50 Aligned_cols=51 Identities=8% Similarity=0.085 Sum_probs=36.1
Q ss_pred ceEEeCCCCEEec-CCCCcCeEEEEEEeEEEEEEeeCCCeeEE-EecCCCeec
Q 037278 253 KQVLYTAESYIQQ-EGDPVSEMFFITRGQLLTMKTTNRKRTGV-YLQAGDFFG 303 (449)
Q Consensus 253 ~~~~~~~ge~I~~-eGd~~~~myfI~~G~v~v~~~~~~G~e~~-~l~~Gd~fG 303 (449)
....+.||...-. -....+++++|++|.+++...+.+|+... .+++||++-
T Consensus 55 ~~~~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~g~~~~~~l~~GD~~~ 107 (361)
T 2vqa_A 55 VYMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKVEIADVDKGGLWY 107 (361)
T ss_dssp EEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECTTSCEEEEEEETTEEEE
T ss_pred EEEEEcCCCCCCceeCCCCCEEEEEEEeEEEEEEEeCCCcEEEEEEcCCCEEE
Confidence 3556778876532 23337899999999999985555665444 899999763
No 80
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=53.06 E-value=20 Score=35.16 Aligned_cols=52 Identities=10% Similarity=0.086 Sum_probs=37.6
Q ss_pred cceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEE-EecCCCeec
Q 037278 252 LKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGV-YLQAGDFFG 303 (449)
Q Consensus 252 l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~-~l~~Gd~fG 303 (449)
+....+.||...-..--+..++++|++|.+++...+.+|+... .+++||++=
T Consensus 81 ~~~~~l~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~g~~~~~~l~~GD~~~ 133 (385)
T 1j58_A 81 SVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWY 133 (385)
T ss_dssp EEEEEECTTCEEEEEEESSCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEEE
T ss_pred EEEEEECCCCCCCCccCChheEEEEEeeeEEEEEEeCCCcEEEEEeCCCCEEE
Confidence 3456778888653332337899999999999985555677544 899999863
No 81
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=52.96 E-value=14 Score=28.52 Aligned_cols=49 Identities=14% Similarity=0.085 Sum_probs=31.3
Q ss_pred ceEEeCCCCEEecCCCCc-CeEEEEEEeEEEEEEeeCCCeeEEEecCCCeec
Q 037278 253 KQVLYTAESYIQQEGDPV-SEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFG 303 (449)
Q Consensus 253 ~~~~~~~ge~I~~eGd~~-~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fG 303 (449)
....++||...-..--+. +++++|++|.+++. .++|.+...+.+||.+-
T Consensus 21 ~~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~--~~~g~~~~~l~~Gd~~~ 70 (97)
T 2fqp_A 21 TEWRFPPGGETGWHRHSMDYVVVPMTTGPLLLE--TPEGSVTSQLTRGVSYT 70 (97)
T ss_dssp EEEEECTTCBCCSEECCSCEEEEESSCEEEEEE--ETTEEEEEEECTTCCEE
T ss_pred EEEEECCCCCCCCEECCCCcEEEEEeecEEEEE--eCCCCEEEEEcCCCEEE
Confidence 345677877642222233 45999999999986 34442223799999864
No 82
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=50.05 E-value=48 Score=28.42 Aligned_cols=51 Identities=12% Similarity=0.098 Sum_probs=33.7
Q ss_pred CcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeecHHhHHHhhccCCCCCCCCCcceEEEEecceEEEEE
Q 037278 269 PVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFGEELLMWALETQSSSENLPISTRTVRTLTEVEGLAL 338 (449)
Q Consensus 269 ~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fGE~~l~~~l~~~~~~~~~p~s~~tv~Alt~t~l~~L 338 (449)
..+++++|++|.+++. . +|++. .+++||.+= +... . +.+..+.++++.+.+
T Consensus 83 ~~eE~~yVLeG~~~l~-i--~g~~~-~l~~GD~i~-------iP~G-~-------~h~~~n~~~a~~l~V 133 (151)
T 4axo_A 83 NYDEIDYVIDGTLDII-I--DGRKV-SASSGELIF-------IPKG-S-------KIQFSVPDYARFIYV 133 (151)
T ss_dssp SSEEEEEEEEEEEEEE-E--TTEEE-EEETTCEEE-------ECTT-C-------EEEEEEEEEEEEEEE
T ss_pred CCcEEEEEEEeEEEEE-E--CCEEE-EEcCCCEEE-------ECCC-C-------EEEEEeCCCEEEEEE
Confidence 4678999999999987 2 55443 799999863 3322 1 444455566766554
No 83
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=49.15 E-value=29 Score=34.03 Aligned_cols=52 Identities=15% Similarity=0.043 Sum_probs=36.7
Q ss_pred cceEEeCCCCEEecCCCCc-CeEEEEEEeEEEEEEeeCCCeeEE-EecCCCeec
Q 037278 252 LKQVLYTAESYIQQEGDPV-SEMFFITRGQLLTMKTTNRKRTGV-YLQAGDFFG 303 (449)
Q Consensus 252 l~~~~~~~ge~I~~eGd~~-~~myfI~~G~v~v~~~~~~G~e~~-~l~~Gd~fG 303 (449)
+....++||...-..-.+. +++++|++|.+++.....+|+... .+++||.+-
T Consensus 259 ~~~~~l~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~~~~g~~~~~~l~~GD~~~ 312 (385)
T 1j58_A 259 SALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGY 312 (385)
T ss_dssp EEEEEECTTCEEEEEECSSSCEEEEEEESEEEEEEEEETTEEEEEEEESSCEEE
T ss_pred EEEEEECCCcccCceeCCCCCEEEEEEeCeEEEEEEcCCCcEEEEEEcCCCEEE
Confidence 3456778887764333344 899999999999875446665333 899999874
No 84
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=47.48 E-value=56 Score=27.06 Aligned_cols=44 Identities=16% Similarity=0.116 Sum_probs=30.7
Q ss_pred eEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeec
Q 037278 254 QVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFG 303 (449)
Q Consensus 254 ~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fG 303 (449)
...+.||+.-.+ ...+++++|++|.+.+. . +|++. .+++||.+-
T Consensus 61 ~~~~~pG~~~~h--~~~~E~~~VLeG~~~l~--~-~g~~~-~l~~GD~i~ 104 (133)
T 2pyt_A 61 FMQWDNAFFPWT--LNYDEIDMVLEGELHVR--H-EGETM-IAKAGDVMF 104 (133)
T ss_dssp EEEEEEEEEEEE--CSSEEEEEEEEEEEEEE--E-TTEEE-EEETTCEEE
T ss_pred EEEECCCCcccc--CCCCEEEEEEECEEEEE--E-CCEEE-EECCCcEEE
Confidence 446677743222 24689999999999987 2 35544 799999875
No 85
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=47.46 E-value=32 Score=33.29 Aligned_cols=52 Identities=17% Similarity=0.140 Sum_probs=36.8
Q ss_pred cceEEeCCCCEEecCCCC-cCeEEEEEEeEEEEEEeeCCCeeEE-EecCCCeec
Q 037278 252 LKQVLYTAESYIQQEGDP-VSEMFFITRGQLLTMKTTNRKRTGV-YLQAGDFFG 303 (449)
Q Consensus 252 l~~~~~~~ge~I~~eGd~-~~~myfI~~G~v~v~~~~~~G~e~~-~l~~Gd~fG 303 (449)
+....+.||..+-..-.+ .+++++|++|.+++...+.+|+... .+++||++-
T Consensus 236 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~v~~~~g~~~~~~l~~GD~~~ 289 (361)
T 2vqa_A 236 GALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVFASEGKASVSRLQQGDVGY 289 (361)
T ss_dssp EEEEEECTTCEEEEEECSSCCEEEEEEESCEEEEEECSTTCEEEEEECTTCEEE
T ss_pred EEEEEECCCcccccccCCCCCEEEEEEeCEEEEEEEcCCCcEEEEEECCCCEEE
Confidence 445678888876433233 4899999999999874455666323 899999874
No 86
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B
Probab=47.34 E-value=19 Score=36.65 Aligned_cols=52 Identities=12% Similarity=0.160 Sum_probs=38.9
Q ss_pred cceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeec
Q 037278 252 LKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFG 303 (449)
Q Consensus 252 l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fG 303 (449)
+....+.||..+-..-...+++++|++|.+.+...+.++++...+++||++-
T Consensus 88 ~~~~~l~Pgg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~~~~l~~GDv~~ 139 (445)
T 2cav_A 88 VLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRDTYKLDQGDAIK 139 (445)
T ss_dssp EEEEEECSSEEEEEEEESSEEEEEEEESEEEEEEEETTEEEEEEEETTEEEE
T ss_pred EEEEEECCCcCccCcCCCCceEEEEEeCEEEEEEEeCCCCEEEEecCCCEEE
Confidence 4557888887766555567899999999999875555555433899999874
No 87
>2q1z_B Anti-sigma factor CHRR, transcriptional activator; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_B
Probab=47.19 E-value=42 Score=29.88 Aligned_cols=65 Identities=14% Similarity=0.115 Sum_probs=46.7
Q ss_pred hcceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeecHHhHHHhhccCCCCCCCCCcceEEEE-
Q 037278 251 SLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFGEELLMWALETQSSSENLPISTRTVRT- 329 (449)
Q Consensus 251 ~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fGE~~l~~~l~~~~~~~~~p~s~~tv~A- 329 (449)
......+.||..+-.-.-++.++.+|++|..+ +++| .+.+||++= +.++ +..+..+
T Consensus 126 ~v~l~~~~pG~~~p~H~H~g~E~~~VL~G~f~----de~~----~~~~Gd~~~-------~p~g--------~~H~p~a~ 182 (195)
T 2q1z_B 126 IARLLWIPGGQAVPDHGHRGLELTLVLQGAFR----DETD----RFGAGDIEI-------ADQE--------LEHTPVAE 182 (195)
T ss_dssp EEEEEEECTTCBCCCCCCSSCEEEEEEESEEE----CSSS----EEETTCEEE-------ECSS--------CCCCCEEC
T ss_pred EEEEEEECCCCCCCCcCCCCeEEEEEEEEEEE----CCcE----EECCCeEEE-------eCcC--------CccCCEeC
Confidence 44678899999998888889999999999954 3333 488999863 2222 2555666
Q ss_pred -ecceEEEEE
Q 037278 330 -LTEVEGLAL 338 (449)
Q Consensus 330 -lt~t~l~~L 338 (449)
.++|.++..
T Consensus 183 ~~~gc~~l~~ 192 (195)
T 2q1z_B 183 RGLDCICLAA 192 (195)
T ss_dssp SSSCEEEEEE
T ss_pred CCCCEEEEEE
Confidence 667777654
No 88
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=46.96 E-value=90 Score=23.71 Aligned_cols=67 Identities=12% Similarity=0.131 Sum_probs=41.2
Q ss_pred eEEeCCCCEEecCCCC-cCeE-EEEEEeEEEEEEeeCCCeeEEEecCCCeecHHhHHHhhccCCCCCCCCCcceEEEEec
Q 037278 254 QVLYTAESYIQQEGDP-VSEM-FFITRGQLLTMKTTNRKRTGVYLQAGDFFGEELLMWALETQSSSENLPISTRTVRTLT 331 (449)
Q Consensus 254 ~~~~~~ge~I~~eGd~-~~~m-yfI~~G~v~v~~~~~~G~e~~~l~~Gd~fGE~~l~~~l~~~~~~~~~p~s~~tv~Alt 331 (449)
...+.+|..+-..--+ ..++ ++|++|.+++. .++|++. .+.+||.+- +.+. ....+.+.+
T Consensus 37 ~~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~--~~~~~~~-~l~~Gd~~~-------ip~~--------~~H~~~~~~ 98 (110)
T 2q30_A 37 SFTFKAGQELPVHSHNIEGELNIVVLEGEGEFV--GDGDAVI-PAPRGAVLV-------APIS--------TPHGVRAVT 98 (110)
T ss_dssp EEEECTTCEEEEECCSSSCEEEEEEEESCEEEE--CGGGCEE-EECTTEEEE-------EETT--------SCEEEEESS
T ss_pred EEEECCCCcCCcccCCCCccEEEEEEeCEEEEE--eCCCEEE-EECCCCEEE-------eCCC--------CcEEEEEcC
Confidence 4466788766432222 2466 89999999876 2223333 699999763 3322 156777777
Q ss_pred ceEEEEE
Q 037278 332 EVEGLAL 338 (449)
Q Consensus 332 ~t~l~~L 338 (449)
++.++.+
T Consensus 99 ~~~~l~~ 105 (110)
T 2q30_A 99 DMKVLVT 105 (110)
T ss_dssp SEEEEEE
T ss_pred CcEEEEE
Confidence 7765543
No 89
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=45.58 E-value=41 Score=25.85 Aligned_cols=47 Identities=15% Similarity=0.209 Sum_probs=32.7
Q ss_pred ceEEeCCCCEEecC--CCC-cCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeec
Q 037278 253 KQVLYTAESYIQQE--GDP-VSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFG 303 (449)
Q Consensus 253 ~~~~~~~ge~I~~e--Gd~-~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fG 303 (449)
....+.+|..+-.. --+ ..++++|++|.+.+. . +|++ ..+.+||.+-
T Consensus 24 ~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~-~--~~~~-~~l~~Gd~~~ 73 (113)
T 2gu9_A 24 AEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAI-V--DGHT-QALQAGSLIA 73 (113)
T ss_dssp EEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEE-E--TTEE-EEECTTEEEE
T ss_pred EEEEECCCCccCCcccccCCCcEEEEEEeCEEEEE-E--CCEE-EEeCCCCEEE
Confidence 34567888876543 333 679999999999886 2 3333 2789999763
No 90
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=45.40 E-value=38 Score=34.92 Aligned_cols=58 Identities=12% Similarity=0.131 Sum_probs=40.9
Q ss_pred HHHHhhcceEEeCCCCEEecC-CCCcCeEEEEEEeEEEEEEeeCCCeeEE--EecCCCeec
Q 037278 246 SEMCDSLKQVLYTAESYIQQE-GDPVSEMFFITRGQLLTMKTTNRKRTGV--YLQAGDFFG 303 (449)
Q Consensus 246 ~~L~~~l~~~~~~~ge~I~~e-Gd~~~~myfI~~G~v~v~~~~~~G~e~~--~l~~Gd~fG 303 (449)
..+--.+....+.||..+-.- ....+++++|++|.+++...+.+|+..+ .+++||++=
T Consensus 363 ~~lgls~a~v~l~pG~~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~g~~~~~~~l~~GDv~v 423 (493)
T 2d5f_A 363 RQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNAQGNAVFDGELRRGQLLV 423 (493)
T ss_dssp HHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEE
T ss_pred cccceEEEEEEccCCceeeeeECCCCCEEEEEEeceEEEEEEcCCCCEEEeEEEcCCCEEE
Confidence 344344566778888755332 2336899999999999886666666655 799999874
No 91
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A
Probab=45.07 E-value=32 Score=35.36 Aligned_cols=52 Identities=10% Similarity=0.018 Sum_probs=38.0
Q ss_pred cceEEeCCCCEEecCC-CCcCeEEEEEEeEEEEEEeeCCCeeEE--EecCCCeec
Q 037278 252 LKQVLYTAESYIQQEG-DPVSEMFFITRGQLLTMKTTNRKRTGV--YLQAGDFFG 303 (449)
Q Consensus 252 l~~~~~~~ge~I~~eG-d~~~~myfI~~G~v~v~~~~~~G~e~~--~l~~Gd~fG 303 (449)
+....+.||..+-.-= ...+++++|++|.+++...+++|.+.+ .+++||++=
T Consensus 340 ~~~v~l~pGa~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~G~~~~~~~l~~GDv~v 394 (476)
T 1fxz_A 340 AEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQEGRVLI 394 (476)
T ss_dssp EEEEEECTTCEEEEEEETTCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEE
T ss_pred EEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEecCCCEEeeeEEcCCCEEE
Confidence 4567788887653322 236899999999999986666776655 799999873
No 92
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=44.48 E-value=22 Score=27.64 Aligned_cols=68 Identities=9% Similarity=0.076 Sum_probs=41.0
Q ss_pred CCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeecHHhHHHhhccCCCCCCCCCcceEEEEecceEEEE
Q 037278 258 TAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFGEELLMWALETQSSSENLPISTRTVRTLTEVEGLA 337 (449)
Q Consensus 258 ~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fGE~~l~~~l~~~~~~~~~p~s~~tv~Alt~t~l~~ 337 (449)
.+|+...+..+...++++|++|.+++. .++|+.. .+.+||.+- +.++. .....+.+++.++.
T Consensus 36 ~~g~~~~H~H~~~~E~~~Vl~G~~~~~--~~~~~~~-~l~~Gd~~~-------ip~~~--------~H~~~~~~~~~~l~ 97 (107)
T 2i45_A 36 LLGDYGWHTHGYSDKVLFAVEGDMAVD--FADGGSM-TIREGEMAV-------VPKSV--------SHRPRSENGCSLVL 97 (107)
T ss_dssp EEEECCCBCC--CCEEEEESSSCEEEE--ETTSCEE-EECTTEEEE-------ECTTC--------CEEEEEEEEEEEEE
T ss_pred CCCCCcceeCCCCCEEEEEEeCEEEEE--ECCCcEE-EECCCCEEE-------ECCCC--------cEeeEeCCCeEEEE
Confidence 455543344433489999999999986 2332332 799999863 33221 55566667788877
Q ss_pred EcHHHH
Q 037278 338 LMADDL 343 (449)
Q Consensus 338 L~~~df 343 (449)
+.....
T Consensus 98 i~~~~~ 103 (107)
T 2i45_A 98 IELSDP 103 (107)
T ss_dssp EECC--
T ss_pred EECCCc
Confidence 765443
No 93
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=43.81 E-value=45 Score=25.03 Aligned_cols=47 Identities=6% Similarity=0.055 Sum_probs=31.2
Q ss_pred ceEEeCCCCEEecCCCC-cCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeec
Q 037278 253 KQVLYTAESYIQQEGDP-VSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFG 303 (449)
Q Consensus 253 ~~~~~~~ge~I~~eGd~-~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fG 303 (449)
....+.||..+-..--+ .+++++|++|.+.+. . +|++ ..+.+||.+=
T Consensus 31 ~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~-~--~~~~-~~l~~Gd~~~ 78 (105)
T 1v70_A 31 DLYALLPGQAQKVHVHEGSDKVYYALEGEVVVR-V--GEEE-ALLAPGMAAF 78 (105)
T ss_dssp EEEEECTTCEEEEECCSSCEEEEEEEESCEEEE-E--TTEE-EEECTTCEEE
T ss_pred EEEEECCCCcCCccCCCCCcEEEEEEeCEEEEE-E--CCEE-EEeCCCCEEE
Confidence 34567788776433223 357999999999886 2 3332 3799999863
No 94
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=43.74 E-value=45 Score=29.56 Aligned_cols=52 Identities=15% Similarity=0.183 Sum_probs=34.5
Q ss_pred cceEEeCCCCEEec-CCCCcCeEEEEEEeEEEEEEeeCC---CeeEE-EecCCCeec
Q 037278 252 LKQVLYTAESYIQQ-EGDPVSEMFFITRGQLLTMKTTNR---KRTGV-YLQAGDFFG 303 (449)
Q Consensus 252 l~~~~~~~ge~I~~-eGd~~~~myfI~~G~v~v~~~~~~---G~e~~-~l~~Gd~fG 303 (449)
+....+.+|...-. .....+++++|++|.+++...+.+ ++... .+.+||.+-
T Consensus 74 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~~~~~~~~~l~~GD~~~ 130 (201)
T 1fi2_A 74 MNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFV 130 (201)
T ss_dssp EEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECCGGGTTCEEEEEEETTCEEE
T ss_pred EEEEEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCCCCCeEEEEEECCCCEEE
Confidence 34567788876532 233357999999999998733332 34223 899999874
No 95
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=43.74 E-value=24 Score=35.77 Aligned_cols=53 Identities=8% Similarity=0.100 Sum_probs=39.4
Q ss_pred hcceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeec
Q 037278 251 SLKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFG 303 (449)
Q Consensus 251 ~l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fG 303 (449)
.+....+.||..+-.--...+++++|++|...+...++++.+...+++||++-
T Consensus 62 s~~~~~l~PGg~~~pHh~~a~Ei~yVl~G~g~v~~v~~~~~~~~~l~~GDv~~ 114 (434)
T 2ea7_A 62 RVVEFKSKPNTLLLPHHADADFLLVVLNGTAVLTLVNPDSRDSYILEQGHAQK 114 (434)
T ss_dssp EEEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEECSSCEEEEEEETTEEEE
T ss_pred EEEEEEecCCcCccCccCCCceEEEEEecEEEEEEEeCCCCEEEEeCCCCEEE
Confidence 35567888998876665667899999999999875444443333899999864
No 96
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Probab=43.42 E-value=23 Score=35.66 Aligned_cols=52 Identities=15% Similarity=0.228 Sum_probs=38.4
Q ss_pred cceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeec
Q 037278 252 LKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFG 303 (449)
Q Consensus 252 l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fG 303 (449)
+....+.||..+..--...+++++|++|...+...++++.+...+++||++-
T Consensus 51 ~~~~~l~PGg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~~~~l~~GDv~~ 102 (416)
T 1uij_A 51 IVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDDRDSYNLHPGDAQR 102 (416)
T ss_dssp EEEEEECTTEEEEEEEESEEEEEEEEESCEEEEEECSSCEEEEEECTTEEEE
T ss_pred EEEEEeccCcCcccccCCCceEEEEEeeEEEEEEEECCCCeEEEecCCCEEE
Confidence 5567888988765555667899999999999875445333333899999874
No 97
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}
Probab=43.42 E-value=35 Score=35.32 Aligned_cols=58 Identities=10% Similarity=0.028 Sum_probs=40.9
Q ss_pred HHHHhhcceEEeCCCCEEecC-CCCcCeEEEEEEeEEEEEEeeCCCeeEE--EecCCCeec
Q 037278 246 SEMCDSLKQVLYTAESYIQQE-GDPVSEMFFITRGQLLTMKTTNRKRTGV--YLQAGDFFG 303 (449)
Q Consensus 246 ~~L~~~l~~~~~~~ge~I~~e-Gd~~~~myfI~~G~v~v~~~~~~G~e~~--~l~~Gd~fG 303 (449)
..+--.+....+.||..+-.- ...++++++|++|.+++...+++|++.+ .+++||++=
T Consensus 368 ~~l~is~a~v~L~PG~~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~G~~~~~~~l~~GDv~v 428 (510)
T 3c3v_A 368 RWLGLSAEYGNLYRNALFVPHYNTNAHSIIYALRGRAHVQVVDSNGNRVYDEELQEGHVLV 428 (510)
T ss_dssp HHHTCEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEE
T ss_pred ccceEEEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEeCCCCEEEeEEEcCCcEEE
Confidence 333334566788888865332 2236899999999999986667776654 799999873
No 98
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=43.33 E-value=36 Score=31.33 Aligned_cols=49 Identities=12% Similarity=0.105 Sum_probs=36.7
Q ss_pred hcceEEeCCCCEEec-CCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeec
Q 037278 251 SLKQVLYTAESYIQQ-EGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFG 303 (449)
Q Consensus 251 ~l~~~~~~~ge~I~~-eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fG 303 (449)
.+...+++||..+=. +-....+.++|++|++.+. .+|++. .+++||++-
T Consensus 166 ~~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~---~~~~~~-~l~~GD~~~ 215 (246)
T 1sfn_A 166 MVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYK---LEENYY-PVTAGDIIW 215 (246)
T ss_dssp EEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEE---ETTEEE-EEETTCEEE
T ss_pred EEEEEEECCCCccCcccCCCceEEEEEEECEEEEE---ECCEEE-EcCCCCEEE
Confidence 356778899987764 4455678999999999876 345544 799999864
No 99
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=43.10 E-value=71 Score=23.94 Aligned_cols=53 Identities=19% Similarity=0.318 Sum_probs=35.9
Q ss_pred CCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeecHHhHHHhhccCCCCCCCCCcceEEEEecceEEEEEc
Q 037278 268 DPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFGEELLMWALETQSSSENLPISTRTVRTLTEVEGLALM 339 (449)
Q Consensus 268 d~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fGE~~l~~~l~~~~~~~~~p~s~~tv~Alt~t~l~~L~ 339 (449)
+...++++|++|.+.+. . +|++ ..+.+||.+- +.+. ......+.+++.++.++
T Consensus 48 ~~~~e~~~v~~G~~~~~-~--~~~~-~~l~~Gd~~~-------ip~~--------~~H~~~~~~~~~~l~i~ 100 (102)
T 3d82_A 48 ADTDEVFIVMEGTLQIA-F--RDQN-ITLQAGEMYV-------IPKG--------VEHKPMAKEECKIMIIE 100 (102)
T ss_dssp TTCCEEEEEEESEEEEE-C--SSCE-EEEETTEEEE-------ECTT--------CCBEEEEEEEEEEEEEE
T ss_pred CCCcEEEEEEeCEEEEE-E--CCEE-EEEcCCCEEE-------ECCC--------CeEeeEcCCCCEEEEEE
Confidence 33479999999999876 2 3333 2689999763 3332 15666667788887765
No 100
>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A
Probab=42.62 E-value=45 Score=34.64 Aligned_cols=59 Identities=12% Similarity=0.146 Sum_probs=42.8
Q ss_pred HHHHHhhcceEEeCCCCEEecC-CCCcCeEEEEEEeEEEEEEeeCCCeeEE--EecCCCeec
Q 037278 245 LSEMCDSLKQVLYTAESYIQQE-GDPVSEMFFITRGQLLTMKTTNRKRTGV--YLQAGDFFG 303 (449)
Q Consensus 245 l~~L~~~l~~~~~~~ge~I~~e-Gd~~~~myfI~~G~v~v~~~~~~G~e~~--~l~~Gd~fG 303 (449)
+..+--.+....+.||-++-.- .-.++++.+|++|.+++...+.+|+..+ .+.+||++=
T Consensus 389 L~~LgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~G~~v~~~~L~~GDV~v 450 (531)
T 3fz3_A 389 LRFLRLSAERGFFYRNGIYSPHWNVNAHSVVYVIRGNARVQVVNENGDAILDQEVQQGQLFI 450 (531)
T ss_dssp HHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEE
T ss_pred cccCceeEEEEEeecCccccceEcCCCCEEEEEEeCcEEEEEEeCCCcEEEEEEecCCeEEE
Confidence 3444344567788888876432 2336899999999999987777777654 899999873
No 101
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=42.16 E-value=1.2e+02 Score=27.67 Aligned_cols=64 Identities=13% Similarity=0.095 Sum_probs=42.3
Q ss_pred eEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeecHHhHHHhhccCCCCCCCCCcceEEEEecce
Q 037278 254 QVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFGEELLMWALETQSSSENLPISTRTVRTLTEV 333 (449)
Q Consensus 254 ~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fGE~~l~~~l~~~~~~~~~p~s~~tv~Alt~t 333 (449)
...++||...-..- .+++++|++|.+++. .+|++. .+++||++- +.... ++..+..+++
T Consensus 54 ~~~l~Pg~~~~~~~--~ee~~~Vl~G~~~~~---~~~~~~-~l~~Gd~~~-------~p~~~--------~H~~~n~~~~ 112 (246)
T 1sfn_A 54 TAEMPAGAQATESV--YQRFAFVLSGEVDVA---VGGETR-TLREYDYVY-------LPAGE--------KHMLTAKTDA 112 (246)
T ss_dssp EEEECTTCEEECCS--SEEEEEEEEEEEEEE---CSSCEE-EECTTEEEE-------ECTTC--------CCEEEEEEEE
T ss_pred EEEECCCCcCCCCc--eeEEEEEEECEEEEE---ECCEEE-EECCCCEEE-------ECCCC--------CEEEEeCCCE
Confidence 45778887665442 778999999999986 244443 799999864 33221 4455554677
Q ss_pred EEEEE
Q 037278 334 EGLAL 338 (449)
Q Consensus 334 ~l~~L 338 (449)
+++.+
T Consensus 113 ~~l~v 117 (246)
T 1sfn_A 113 RVSVF 117 (246)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 76665
No 102
>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21
Probab=41.87 E-value=29 Score=29.23 Aligned_cols=48 Identities=13% Similarity=0.020 Sum_probs=34.7
Q ss_pred cceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeE--EEecCCCeec
Q 037278 252 LKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTG--VYLQAGDFFG 303 (449)
Q Consensus 252 l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~--~~l~~Gd~fG 303 (449)
+....++||..+-.-.-+..+.++|++|..+. .+|... ..+++||++=
T Consensus 46 ~~~~~~~pG~~~p~H~H~~~ee~~VL~G~~~~----~~g~~~~~~~~~~Gd~~~ 95 (145)
T 2o1q_A 46 TAIFDCPAGSSFAAHVHVGPGEYFLTKGKMDV----RGGKAAGGDTAIAPGYGY 95 (145)
T ss_dssp EEEEEECTTEEECCEEESSCEEEEEEEEEEEE----TTCGGGTSEEEESSEEEE
T ss_pred EEEEEECCCCCCCccCCCCCEEEEEEEeEEEE----cCCCEecceEeCCCEEEE
Confidence 45678899988877666678889999999873 233332 2578898864
No 103
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=40.84 E-value=33 Score=30.18 Aligned_cols=48 Identities=6% Similarity=0.037 Sum_probs=31.9
Q ss_pred cceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCee
Q 037278 252 LKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFF 302 (449)
Q Consensus 252 l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~f 302 (449)
+....++||...-.--....+..+|++|.+++. .++|++. .+++||.+
T Consensus 81 ~~~v~l~PG~~~~~H~H~~eE~~~VLeGel~l~--ld~ge~~-~L~~GDsi 128 (172)
T 3es1_A 81 IRVVDMLPGKESPMHRTNSIDYGIVLEGEIELE--LDDGAKR-TVRQGGII 128 (172)
T ss_dssp EEEEEECTTCBCCCBCCSEEEEEEEEESCEEEE--CGGGCEE-EECTTCEE
T ss_pred EEEEEECCCCCCCCeecCceEEEEEEeCEEEEE--ECCCeEE-EECCCCEE
Confidence 345667777644333334567889999999986 2324433 69999997
No 104
>2ypj_A Eccel5A, endoglucanase CEL5A; hydrolase, cellulase, xyloglucan, ITC; HET: BGC; 2.35A {Eubacterium cellulosolvens}
Probab=38.92 E-value=3.5 Score=33.70 Aligned_cols=36 Identities=28% Similarity=0.346 Sum_probs=30.4
Q ss_pred eEeccceeecChHHHHHhcccccc-hhhhhhccCcch
Q 037278 128 SSLLAGNLHKTVRESAIKYFMGFF-TIDLVAILPLPQ 163 (449)
Q Consensus 128 ~~~~~G~lV~d~k~Ia~~Ylk~~F-~~Dlls~lP~~~ 163 (449)
.|.++|.-|.-..+|||.|-...| -+|-+++=|+|.
T Consensus 99 yyvvdgtavftkeqiakaygsddfs~ldyi~vkplps 135 (155)
T 2ypj_A 99 YYVVDGTAVFTKEQIAKAYGSDDFSGLDYIAVKPLPS 135 (155)
T ss_dssp SEEETTEEEEEHHHHHHHHTSSCCTTCCEEEEEECSC
T ss_pred eEEEcceEEecHHHHHHHhCCCcccCcceEEeecCCc
Confidence 444499999999999999999866 489999988864
No 105
>4ba6_A Endoglucanase CEL5A; carbohydrate-binding protein, plant cell WALL degradation, beta-jelly roll; 1.42A {Eubacterium cellulosolvens}
Probab=38.88 E-value=3.5 Score=33.33 Aligned_cols=36 Identities=28% Similarity=0.346 Sum_probs=30.5
Q ss_pred eEeccceeecChHHHHHhcccccc-hhhhhhccCcch
Q 037278 128 SSLLAGNLHKTVRESAIKYFMGFF-TIDLVAILPLPQ 163 (449)
Q Consensus 128 ~~~~~G~lV~d~k~Ia~~Ylk~~F-~~Dlls~lP~~~ 163 (449)
.|.++|.-|.-..+|||.|-...| -+|-+++=|+|.
T Consensus 80 yyvvdgtavftkeqiakaygsddfs~ldyi~vkplps 116 (144)
T 4ba6_A 80 YYVVDGTAVFTKEQIAKAYGSDDFSGLDYIAVKPLPS 116 (144)
T ss_dssp SEEETTEEEEEHHHHHHHHTCSCCTTCCEEEEEECSC
T ss_pred eEEEcceEEecHHHHHHHhCCCcccCcceEEeecCCc
Confidence 344499999999999999999866 589999999874
No 106
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=38.86 E-value=47 Score=31.24 Aligned_cols=49 Identities=16% Similarity=0.212 Sum_probs=37.1
Q ss_pred hcceEEeCCCCEEec-CCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeec
Q 037278 251 SLKQVLYTAESYIQQ-EGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFG 303 (449)
Q Consensus 251 ~l~~~~~~~ge~I~~-eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fG 303 (449)
.+....++||..|-. +-..-.+.++|++|+..+. .+|+.. .+++||++-
T Consensus 192 ~~~~~~l~pG~~i~~~~~h~~e~~~~il~G~~~~~---~~~~~~-~v~~GD~~~ 241 (278)
T 1sq4_A 192 HVNIVNFEPGGVIPFAETHVMEHGLYVLEGKAVYR---LNQDWV-EVEAGDFMW 241 (278)
T ss_dssp EEEEEEECSSSEESCCCCCSEEEEEEEEECEEEEE---ETTEEE-EEETTCEEE
T ss_pred EEEEEEECCCCCcCCCCCCCccEEEEEEeCEEEEE---ECCEEE-EeCCCCEEE
Confidence 466788999999975 4555568899999999875 345443 699999864
No 107
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=38.71 E-value=53 Score=28.24 Aligned_cols=47 Identities=15% Similarity=0.144 Sum_probs=32.0
Q ss_pred ceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeec
Q 037278 253 KQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFG 303 (449)
Q Consensus 253 ~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fG 303 (449)
....+.||..+-..--+..++++|++|.+.+. . +|++ ..+.+||++-
T Consensus 59 ~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~-i--~~~~-~~l~~Gd~i~ 105 (167)
T 3ibm_A 59 RYFEVEPGGYTTLERHEHTHVVMVVRGHAEVV-L--DDRV-EPLTPLDCVY 105 (167)
T ss_dssp EEEEECTTCBCCCBBCSSCEEEEEEESEEEEE-E--TTEE-EEECTTCEEE
T ss_pred EEEEECCCCCCCCccCCCcEEEEEEeCEEEEE-E--CCEE-EEECCCCEEE
Confidence 34566777655433345789999999999876 2 3333 2799999864
No 108
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=38.34 E-value=34 Score=28.99 Aligned_cols=50 Identities=8% Similarity=0.079 Sum_probs=31.1
Q ss_pred ceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCC-----e-eEEEecCCCeec
Q 037278 253 KQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRK-----R-TGVYLQAGDFFG 303 (449)
Q Consensus 253 ~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G-----~-e~~~l~~Gd~fG 303 (449)
....+++|..+-..--...++++|++|.+.+. ..+.| + +...+.+||++-
T Consensus 44 ~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~-~~~~~~~~~~~~~~~~l~~Gd~i~ 99 (163)
T 1lr5_A 44 WLQTISPGQRTPIHRHSCEEVFTVLKGKGTLL-MGSSSLKYPGQPQEIPFFQNTTFS 99 (163)
T ss_dssp EEEEECTTCBCCEEEESSCEEEEEEECCEEEE-ECCSSSSSCCSCEEEEECTTEEEE
T ss_pred EEEEECCCCcCCCeECCCCeEEEEEeCEEEEE-ECCccccccCccEEEEeCCCCEEE
Confidence 34566777654221223567999999999987 33311 1 223899999863
No 109
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=36.96 E-value=69 Score=30.13 Aligned_cols=69 Identities=7% Similarity=0.077 Sum_probs=44.4
Q ss_pred ceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeecHHhHHHhhccCCCCCCCCCcceEEEEecc
Q 037278 253 KQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFGEELLMWALETQSSSENLPISTRTVRTLTE 332 (449)
Q Consensus 253 ~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fGE~~l~~~l~~~~~~~~~p~s~~tv~Alt~ 332 (449)
-...+.||..--......+++.+|++|.+++. .++|++. .+++||++= +.+. ...+.+..++
T Consensus 73 ~lv~l~PGg~s~~~~h~~EEfiyVleG~l~l~--l~~g~~~-~L~~Gds~y-------~p~~--------~~H~~~N~~~ 134 (266)
T 4e2q_A 73 YLAKMKEMSSSGLPPQDIERLIFVVEGAVTLT--NTSSSSK-KLTVDSYAY-------LPPN--------FHHSLDCVES 134 (266)
T ss_dssp EEEEECSSEECCCCCTTEEEEEEEEEECEEEE--C--CCCE-EECTTEEEE-------ECTT--------CCCEEEESSC
T ss_pred EEEEECcCCcCCCCCCCCeEEEEEEEEEEEEE--ECCCcEE-EEcCCCEEE-------ECCC--------CCEEEEeCCC
Confidence 35677887764333445789999999999987 2224443 699999863 3322 1455555677
Q ss_pred eEEEEEc
Q 037278 333 VEGLALM 339 (449)
Q Consensus 333 t~l~~L~ 339 (449)
++++.+.
T Consensus 135 Ar~l~V~ 141 (266)
T 4e2q_A 135 ATLVVFE 141 (266)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 8877764
No 110
>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*
Probab=34.93 E-value=38 Score=33.93 Aligned_cols=50 Identities=10% Similarity=0.189 Sum_probs=40.1
Q ss_pred cceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCe
Q 037278 252 LKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDF 301 (449)
Q Consensus 252 l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~ 301 (449)
+....+.||..+...--.++++++|++|...+...+.+|++...+++||+
T Consensus 54 ~~~~~l~pgg~~~ph~~~a~ei~yVl~G~~~v~~v~~~~~~~~~l~~GDv 103 (397)
T 2phl_A 54 LVEFRSKPETLLLPQQADAELLLVVRSGSAILVLVKPDDRREYFFLTSDN 103 (397)
T ss_dssp EEEEEECSSEEEEEEEESEEEEEEEEESEEEEEEEETTTEEEEEEEESSC
T ss_pred EEEEEECCCcCccCEecCCCeEEEEEeeeEEEEEEeCCCcEEEEECCCCc
Confidence 45678888888766555788999999999998877777776339999998
No 111
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=34.45 E-value=40 Score=28.44 Aligned_cols=46 Identities=11% Similarity=0.096 Sum_probs=31.1
Q ss_pred ceEEeCCCCE-E-ecCCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCee
Q 037278 253 KQVLYTAESY-I-QQEGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFF 302 (449)
Q Consensus 253 ~~~~~~~ge~-I-~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~f 302 (449)
....+.||.. . .+.-....++++|++|.+.+. .+|++ ..+++||++
T Consensus 49 ~~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~---~~~~~-~~l~~Gd~i 96 (162)
T 3l2h_A 49 HLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLT---MENDQ-YPIAPGDFV 96 (162)
T ss_dssp EEEEECTTCBSSSSBEESSCCEEEEEEESCEEEE---ETTEE-EEECTTCEE
T ss_pred EEEEECCCCcCCCCccCCCCCEEEEEEEEEEEEE---ECCEE-EEeCCCCEE
Confidence 3466778773 2 222235689999999999986 23433 379999986
No 112
>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*
Probab=33.97 E-value=51 Score=28.97 Aligned_cols=51 Identities=8% Similarity=0.019 Sum_probs=33.4
Q ss_pred ceEEeCCCCEEe-------cCCC--CcCeEEEEEEeEEEEEEeeCCCeeEE-EecCCCeec
Q 037278 253 KQVLYTAESYIQ-------QEGD--PVSEMFFITRGQLLTMKTTNRKRTGV-YLQAGDFFG 303 (449)
Q Consensus 253 ~~~~~~~ge~I~-------~eGd--~~~~myfI~~G~v~v~~~~~~G~e~~-~l~~Gd~fG 303 (449)
....++||...- +.-. ...++++|++|.+.+......|+... .+++||.+=
T Consensus 70 ~~~~l~PG~~~~E~~~~~~H~H~~~~~~E~~~Vl~G~~~~~i~~~~g~~~~~~l~~GD~v~ 130 (190)
T 1x82_A 70 ATTVLYPGKVGKEFFFTKGHFHAKLDRAEVYVALKGKGGMLLQTPEGDAKWISMEPGTVVY 130 (190)
T ss_dssp EEEEECCCEETTEECBCCCBBCSSTTCCEEEEEEESCEEEEEECTTCCEEEEEECTTCEEE
T ss_pred EEEEECCCcCCCcccCCCCeECCCCCCCEEEEEEcCEEEEEEcCcCCcEEEEEECCCcEEE
Confidence 345777876521 1111 23699999999999884444455444 899999863
No 113
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=33.83 E-value=42 Score=28.69 Aligned_cols=47 Identities=15% Similarity=0.147 Sum_probs=31.3
Q ss_pred ceEEeCCCCEEe--cCCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeec
Q 037278 253 KQVLYTAESYIQ--QEGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFG 303 (449)
Q Consensus 253 ~~~~~~~ge~I~--~eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fG 303 (449)
....+.||.... +..+..+++++|++|.+++. . +|++ ..+.+||.+-
T Consensus 46 ~~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~-~--~~~~-~~l~~GD~i~ 94 (163)
T 3i7d_A 46 NLVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLV-D--DQGE-HPMVPGDCAA 94 (163)
T ss_dssp EEEEECTTCBSSSSEEESSCCEEEEEEESCEEEE-E--TTEE-EEECTTCEEE
T ss_pred EEEEECCCCcCCCCccCCCCcEEEEEEECEEEEE-E--CCEE-EEeCCCCEEE
Confidence 356677877542 22333479999999999987 2 3333 3789999764
No 114
>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A
Probab=33.82 E-value=51 Score=33.62 Aligned_cols=58 Identities=10% Similarity=0.113 Sum_probs=41.3
Q ss_pred HHHHhhcceEEeCCCCEEecC-CCCcCeEEEEEEeEEEEEEeeCCCeeEE--EecCCCeec
Q 037278 246 SEMCDSLKQVLYTAESYIQQE-GDPVSEMFFITRGQLLTMKTTNRKRTGV--YLQAGDFFG 303 (449)
Q Consensus 246 ~~L~~~l~~~~~~~ge~I~~e-Gd~~~~myfI~~G~v~v~~~~~~G~e~~--~l~~Gd~fG 303 (449)
..+---+....+.||.+..-- .-.++++++|++|.+++...+.+|+..+ .+.+||+|=
T Consensus 318 ~~l~iS~a~v~l~pG~~~~pH~Hp~A~Ei~yV~~G~~~v~vv~~~g~~~~~~~l~~GDv~v 378 (459)
T 2e9q_A 318 RQVRLSAERGVLYSNAMVAPHYTVNSHSVMYATRGNARVQVVDNFGQSVFDGEVREGQVLM 378 (459)
T ss_dssp HHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEE
T ss_pred cccccceEEEEeeCCcCccceECCCCCEEEEEEeeEEEEEEEeCCCCEEEeeEEeCCcEEE
Confidence 333334556677777765322 2336899999999999987777787766 799999873
No 115
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=33.82 E-value=14 Score=29.06 Aligned_cols=49 Identities=8% Similarity=0.097 Sum_probs=32.6
Q ss_pred cceEEeCCCCEEecCCCC-cCeEEEEEEeEEEEEEeeCCCeeEE-EecCCCee
Q 037278 252 LKQVLYTAESYIQQEGDP-VSEMFFITRGQLLTMKTTNRKRTGV-YLQAGDFF 302 (449)
Q Consensus 252 l~~~~~~~ge~I~~eGd~-~~~myfI~~G~v~v~~~~~~G~e~~-~l~~Gd~f 302 (449)
.+...++||+.+=..--+ ....++|.+|.+++. ..+|+... .+.+|+.+
T Consensus 19 V~r~~i~PG~~~~~H~H~~~~e~~~v~~G~~~v~--~~d~~~~~~~l~~G~~~ 69 (98)
T 3lag_A 19 VTEWRLPPGSATGHHTHGMDYVVVPMADGEMTIV--APDGTRSLAQLKTGRSY 69 (98)
T ss_dssp EEEEEECTTEECCSEECCSCEEEEESSCBC-CEE--CTTSCEECCCBCTTCCE
T ss_pred EEEEEECCCCccCcEECCCcEEEEEEeccEEEEE--eCCCceEEEEecCCcEE
Confidence 345678888877555444 446788889999886 45555444 67888864
No 116
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=32.77 E-value=81 Score=27.22 Aligned_cols=45 Identities=13% Similarity=0.111 Sum_probs=30.6
Q ss_pred EEeCCCCEEec--CCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeec
Q 037278 255 VLYTAESYIQQ--EGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFG 303 (449)
Q Consensus 255 ~~~~~ge~I~~--eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fG 303 (449)
..++||...-. -.....++++|++|.+.+. . +|++. .+.+||.+=
T Consensus 109 ~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~-~--~~~~~-~l~~GD~i~ 155 (192)
T 1y9q_A 109 ITLLDHHQQMSSPHALGVIEYIHVLEGIMKVF-F--DEQWH-ELQQGEHIR 155 (192)
T ss_dssp EEECTTCEEEECCCSTTCEEEEEEEESCEEEE-E--TTEEE-EECTTCEEE
T ss_pred EEECCCCCccCCCCCCCCEEEEEEEEeEEEEE-E--CCEEE-EeCCCCEEE
Confidence 45677766542 2233579999999999986 2 34333 799999863
No 117
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=32.60 E-value=49 Score=28.24 Aligned_cols=46 Identities=15% Similarity=0.142 Sum_probs=30.2
Q ss_pred eEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeec
Q 037278 254 QVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFG 303 (449)
Q Consensus 254 ~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fG 303 (449)
...+.||...-..--+..++++|++|.+++. . +|++. .+.+||++=
T Consensus 48 ~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~v~-v--~g~~~-~l~~Gd~i~ 93 (156)
T 3kgz_A 48 YFEVDEGGYSTLERHAHVHAVMIHRGHGQCL-V--GETIS-DVAQGDLVF 93 (156)
T ss_dssp EEEEEEEEECCCBBCSSCEEEEEEEEEEEEE-E--TTEEE-EEETTCEEE
T ss_pred EEEECCCCccCceeCCCcEEEEEEeCEEEEE-E--CCEEE-EeCCCCEEE
Confidence 3445666654333344578999999999987 2 34433 689999763
No 118
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=32.09 E-value=46 Score=28.74 Aligned_cols=46 Identities=11% Similarity=0.026 Sum_probs=30.4
Q ss_pred eEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeec
Q 037278 254 QVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFG 303 (449)
Q Consensus 254 ~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fG 303 (449)
...+.||..+-..--...++++|++|.+++. . +|++. .+.+||++=
T Consensus 57 ~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~-v--~g~~~-~l~~GD~i~ 102 (166)
T 3jzv_A 57 YFEVGPGGHSTLERHQHAHGVMILKGRGHAM-V--GRAVS-AVAPYDLVT 102 (166)
T ss_dssp EEEEEEEEECCCBBCSSCEEEEEEEECEEEE-E--TTEEE-EECTTCEEE
T ss_pred EEEECCCCccCceeCCCcEEEEEEeCEEEEE-E--CCEEE-EeCCCCEEE
Confidence 3455666655333344578999999999976 2 34432 789999763
No 119
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=31.65 E-value=61 Score=26.37 Aligned_cols=46 Identities=15% Similarity=0.165 Sum_probs=30.9
Q ss_pred eEEeCCCCEEecCCCC-cCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeec
Q 037278 254 QVLYTAESYIQQEGDP-VSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFG 303 (449)
Q Consensus 254 ~~~~~~ge~I~~eGd~-~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fG 303 (449)
...++||..+-.---+ ..++++|++|.+.+. . +|++. .+.+||.+-
T Consensus 61 ~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~-i--~~~~~-~l~~Gd~i~ 107 (133)
T 1o4t_A 61 RMKLPPGSSVGLHKHEGEFEIYYILLGEGVFH-D--NGKDV-PIKAGDVCF 107 (133)
T ss_dssp EEEECTTCEEEEEECCSEEEEEEEEESEEEEE-E--TTEEE-EEETTEEEE
T ss_pred EEEECCCCccCceECCCccEEEEEEeCEEEEE-E--CCEEE-EeCCCcEEE
Confidence 4567888765322222 468999999999886 2 34333 789999763
No 120
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=31.61 E-value=34 Score=34.19 Aligned_cols=48 Identities=19% Similarity=0.053 Sum_probs=35.3
Q ss_pred ceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeec
Q 037278 253 KQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFG 303 (449)
Q Consensus 253 ~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fG 303 (449)
....++||+.+-..--...++|||++|.-..+ ..+|++. .+++||++-
T Consensus 126 ~~~~l~PG~~~~~HrH~~~ev~~IleG~G~~t--~v~G~~~-~~~~GD~i~ 173 (394)
T 3bu7_A 126 GIQTMKAGERAGAHRHAASALRFIMEGSGAYT--IVDGHKV-ELGANDFVL 173 (394)
T ss_dssp EEEEECTTCBCCCEEESSCEEEEEEECSCEEE--EETTEEE-EECTTCEEE
T ss_pred EEEEECCCCCcCCccCCcceEEEEEEeeEEEE--EECCEEE-EEcCCCEEE
Confidence 56788999888655555668999999986543 3456543 799999874
No 121
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23
Probab=31.53 E-value=1.5e+02 Score=28.80 Aligned_cols=74 Identities=12% Similarity=0.074 Sum_probs=48.6
Q ss_pred eEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeecHHhHHHhhccCCCCCCCCCcceEEEEecce
Q 037278 254 QVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFGEELLMWALETQSSSENLPISTRTVRTLTEV 333 (449)
Q Consensus 254 ~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fGE~~l~~~l~~~~~~~~~p~s~~tv~Alt~t 333 (449)
...+++|..--.--.+..++|+|++|..++.. +|++ ..+++||.|- .. .. ....+.+.+++
T Consensus 272 ~~~l~pG~~~~~H~h~~~ev~~v~~G~g~~~v---~~~~-~~~~~GD~~~-------vP-~~-------~~H~~~n~e~~ 332 (354)
T 2d40_A 272 LQLLPKGFASRVARTTDSTIYHVVEGSGQVII---GNET-FSFSAKDIFV-------VP-TW-------HGVSFQTTQDS 332 (354)
T ss_dssp EEEECTTCBCCCBEESSCEEEEEEEEEEEEEE---TTEE-EEEETTCEEE-------EC-TT-------CCEEEEEEEEE
T ss_pred EEEECCCCCCCceecCCcEEEEEEeCeEEEEE---CCEE-EEEcCCCEEE-------EC-CC-------CeEEEEeCCCE
Confidence 45666666544433456689999999999873 4433 3799999874 22 11 14556666888
Q ss_pred EEEEEcHHHHHHH
Q 037278 334 EGLALMADDLKFA 346 (449)
Q Consensus 334 ~l~~L~~~df~~l 346 (449)
.++.+.-..+.+-
T Consensus 333 ~l~~~~d~p~~~~ 345 (354)
T 2d40_A 333 VLFSFSDRPVQEA 345 (354)
T ss_dssp EEEEEESHHHHHH
T ss_pred EEEEEcCHHHHHH
Confidence 8888876655543
No 122
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=31.52 E-value=73 Score=29.09 Aligned_cols=45 Identities=11% Similarity=0.096 Sum_probs=29.2
Q ss_pred EEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCee
Q 037278 255 VLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFF 302 (449)
Q Consensus 255 ~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~f 302 (449)
..+.||..+=.--.+.+++|+|++|.++.. . ++|+. ..+++||.+
T Consensus 137 v~l~PG~~yP~HsHp~EEiy~VLsG~~e~~-v-~~g~~-~~l~pGd~v 181 (217)
T 4b29_A 137 GYWGPGLDYGWHEHLPEELYSVVSGRALFH-L-RNAPD-LMLEPGQTR 181 (217)
T ss_dssp EEECSSCEEEEEECSSEEEEEEEEECEEEE-E-TTSCC-EEECTTCEE
T ss_pred EEECCCCcCCCCCCCCceEEEEEeCCEEEE-E-CCCCE-EecCCCCEE
Confidence 344555443333356789999999999886 2 33333 268999976
No 123
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=31.31 E-value=58 Score=25.81 Aligned_cols=34 Identities=15% Similarity=0.282 Sum_probs=24.0
Q ss_pred CCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeec
Q 037278 268 DPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFG 303 (449)
Q Consensus 268 d~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fG 303 (449)
...+++++|++|.+++. . +++.+...+++||.+-
T Consensus 51 ~~~~E~~~Vl~G~~~l~-~-~~~~~~~~l~~Gd~i~ 84 (112)
T 2opk_A 51 SPQDEWVMVVSGSAGIE-C-EGDTAPRVMRPGDWLH 84 (112)
T ss_dssp CSSEEEEEEEESCEEEE-E-TTCSSCEEECTTEEEE
T ss_pred CCccEEEEEEeCeEEEE-E-CCEEEEEEECCCCEEE
Confidence 45679999999999987 2 2222112699999864
No 124
>3ebr_A Uncharacterized RMLC-like cupin; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.60A {Ralstonia eutropha JMP134}
Probab=31.19 E-value=67 Score=27.60 Aligned_cols=66 Identities=9% Similarity=0.138 Sum_probs=45.5
Q ss_pred cceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeecHHhHHHhhccCCCCCCCCCcceEEEEe-
Q 037278 252 LKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFGEELLMWALETQSSSENLPISTRTVRTL- 330 (449)
Q Consensus 252 l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fGE~~l~~~l~~~~~~~~~p~s~~tv~Al- 330 (449)
.....++||..+-.-.-+..+..+|++|..+. +++|. .+.+||++=+ .+. +..+..+.
T Consensus 44 v~lvr~~pG~~~p~H~H~g~ee~~VL~G~~~~---~e~~~---~~~~Gd~~~~-------P~g--------~~H~~~~~~ 102 (159)
T 3ebr_A 44 ITLLKAPAGMEMPRHHHTGTVIVYTVQGSWRY---KEHDW---VAHAGSVVYE-------TAS--------TRHTPQSAY 102 (159)
T ss_dssp EEEEEECSSCBCCCEEESSCEEEEEEESCEEE---TTSSC---CBCTTCEEEE-------CSS--------EEECEEESS
T ss_pred EEEEEECCCCCcccccCCCCEEEEEEEeEEEE---eCCCe---EECCCeEEEE-------CCC--------CcceeEeCC
Confidence 45678899988877666678889999999764 34443 3889998531 111 26677776
Q ss_pred ---cceEEEEE
Q 037278 331 ---TEVEGLAL 338 (449)
Q Consensus 331 ---t~t~l~~L 338 (449)
++|.++..
T Consensus 103 ~~~e~~~~~~~ 113 (159)
T 3ebr_A 103 AEGPDIITFNI 113 (159)
T ss_dssp SSSSCEEEEEE
T ss_pred CCCCCEEEEEE
Confidence 67877773
No 125
>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum}
Probab=30.72 E-value=56 Score=33.71 Aligned_cols=53 Identities=11% Similarity=0.066 Sum_probs=39.2
Q ss_pred hcceEEeCCCCEEec-CCCCcCeEEEEEEeEEEEEEeeCCCeeEE--EecCCCeec
Q 037278 251 SLKQVLYTAESYIQQ-EGDPVSEMFFITRGQLLTMKTTNRKRTGV--YLQAGDFFG 303 (449)
Q Consensus 251 ~l~~~~~~~ge~I~~-eGd~~~~myfI~~G~v~v~~~~~~G~e~~--~l~~Gd~fG 303 (449)
.+....+.||-+.-- =.-.++++.+|++|.+++...+.+|+..+ .+.+||+|=
T Consensus 359 S~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~g~~~f~~~l~~GDV~v 414 (496)
T 3ksc_A 359 SAEHGSLHKNAMFVPHYNLNANSIIYALKGRARLQVVNCNGNTVFDGELEAGRALT 414 (496)
T ss_dssp EEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEE
T ss_pred eEEEEEeeCCeEECCeeCCCCCEEEEEEeceEEEEEEeCCCcEEEEEEecCCeEEE
Confidence 355567777765522 22347899999999999987777787766 799999873
No 126
>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus}
Probab=30.35 E-value=64 Score=32.98 Aligned_cols=53 Identities=9% Similarity=0.105 Sum_probs=38.6
Q ss_pred hcceEEeCCCCEEec-CCCCcCeEEEEEEeEEEEEEeeCCCeeEE--EecCCCeec
Q 037278 251 SLKQVLYTAESYIQQ-EGDPVSEMFFITRGQLLTMKTTNRKRTGV--YLQAGDFFG 303 (449)
Q Consensus 251 ~l~~~~~~~ge~I~~-eGd~~~~myfI~~G~v~v~~~~~~G~e~~--~l~~Gd~fG 303 (449)
.+....+.||-+.-- =.-.++++.+|++|.+++...+.+|+..+ .+.+||+|=
T Consensus 324 S~a~v~l~pGgm~~PHwHp~A~Ei~yV~~G~~~v~vV~~~g~~~f~~~l~~GDVfv 379 (465)
T 3qac_A 324 SAAKGVLYRNAMMAPHYNLNAHNIMYCVRGRGRIQIVNDQGQSVFDEELSRGQLVV 379 (465)
T ss_dssp EEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEE
T ss_pred eEEEEEecCCcEeeeEECCCCCEEEEEEeCCEEEEEEeCCCcEEEEEEecCCeEEE
Confidence 345567777765522 22337899999999999987777777666 799999873
No 127
>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}
Probab=30.31 E-value=55 Score=30.33 Aligned_cols=31 Identities=13% Similarity=0.220 Sum_probs=24.8
Q ss_pred cCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeec
Q 037278 270 VSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFG 303 (449)
Q Consensus 270 ~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fG 303 (449)
.+++..|++|.+.+. .++|... .+++||.+-
T Consensus 186 ~~E~~~ILeG~v~lt--~~~G~~~-~~~aGD~~~ 216 (238)
T 3myx_A 186 IHELMNLIEGRVVLS--LENGSSL-TVNTGDTVF 216 (238)
T ss_dssp SCEEEEEEECCEEEE--ETTSCEE-EECTTCEEE
T ss_pred CCEEEEEEEeEEEEE--eCCCCEE-EECCCCEEE
Confidence 568999999999986 5566543 799999875
No 128
>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A
Probab=30.22 E-value=54 Score=33.01 Aligned_cols=52 Identities=13% Similarity=0.245 Sum_probs=38.9
Q ss_pred cceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeec
Q 037278 252 LKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFG 303 (449)
Q Consensus 252 l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fG 303 (449)
+....+.||..+.-.--.++++++|++|...+...+.++.....+++||++-
T Consensus 46 l~~~~l~p~gl~~Phh~~A~ei~yV~~G~g~~g~V~~~~~~~~~l~~GDv~~ 97 (418)
T 3s7i_A 46 IVQIEAKPNTLVLPKHADADNILVIQQGQATVTVANGNNRKSFNLDEGHALR 97 (418)
T ss_dssp EEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEECSSCEEEEEEETTEEEE
T ss_pred EEEEEecCCceeeeeeCCCCeEEEEEEeeEEEEEEecCCEEEEEecCCCEEE
Confidence 3345677888777665568899999999998876666554434899999874
No 129
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=29.77 E-value=2e+02 Score=22.49 Aligned_cols=77 Identities=12% Similarity=0.097 Sum_probs=46.7
Q ss_pred eEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeecHHhHHHhhccCCCCCCCCCcceEEEEe--c
Q 037278 254 QVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFGEELLMWALETQSSSENLPISTRTVRTL--T 331 (449)
Q Consensus 254 ~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fGE~~l~~~l~~~~~~~~~p~s~~tv~Al--t 331 (449)
...+++|...-..--...++++|++|.+.+.. +|++. .+.+||++- +.++. .....+. +
T Consensus 38 ~~~~~pg~~~~~H~H~~~Ei~~v~~G~~~~~i---~~~~~-~l~~Gd~~~-------i~~~~--------~H~~~~~~~~ 98 (128)
T 4i4a_A 38 WCIVRPETKSFRHSHNEYELFIVIQGNAIIRI---NDEDF-PVTKGDLII-------IPLDS--------EHHVINNNQE 98 (128)
T ss_dssp EEEECTTEECCCBCCSSEEEEEEEESEEEEEE---TTEEE-EEETTCEEE-------ECTTC--------CEEEEECSSS
T ss_pred EEEECCCCccCCEecCCeEEEEEEeCEEEEEE---CCEEE-EECCCcEEE-------ECCCC--------cEEeEeCCCC
Confidence 44566666443333356789999999998872 44433 789999864 33221 4555554 3
Q ss_pred ceE--EEEEcHHHHHHHHHH
Q 037278 332 EVE--GLALMADDLKFAASR 349 (449)
Q Consensus 332 ~t~--l~~L~~~df~~ll~~ 349 (449)
+++ ++.++.+-+..++.+
T Consensus 99 ~~~~~~i~f~~~~~~~~~~~ 118 (128)
T 4i4a_A 99 DFHFYTIWWDKESTLNFLTR 118 (128)
T ss_dssp CEEEEEEEECHHHHHHHHHH
T ss_pred CEEEEEEEECHHHHHHHHHh
Confidence 333 456677777666554
No 130
>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*
Probab=29.61 E-value=1.3e+02 Score=30.04 Aligned_cols=72 Identities=7% Similarity=0.044 Sum_probs=47.5
Q ss_pred cceEEeCCCCEEec-CCCCcCeEEEEEEeEEEEEEeeC------CCeeEE--EecCCCeecHHhHHHhhccCCCCCCCCC
Q 037278 252 LKQVLYTAESYIQQ-EGDPVSEMFFITRGQLLTMKTTN------RKRTGV--YLQAGDFFGEELLMWALETQSSSENLPI 322 (449)
Q Consensus 252 l~~~~~~~ge~I~~-eGd~~~~myfI~~G~v~v~~~~~------~G~e~~--~l~~Gd~fGE~~l~~~l~~~~~~~~~p~ 322 (449)
+....+.||....- =.-.++++++|++|..++...+. +|.... .+.+||+|= -+...
T Consensus 241 ~a~v~l~pG~~~~PH~h~~A~Ei~yVl~G~g~v~vv~~~~~~~~~g~~~~~~~l~~GDV~v--------vP~G~------ 306 (397)
T 2phl_A 241 ISSIEMEEGALFVPHYYSKAIVILVVNEGEAHVELVGPKGNKETLEYESYRAELSKDDVFV--------IPAAY------ 306 (397)
T ss_dssp EEEEEECTTEEEEEEEESSCEEEEEEEESEEEEEEEEECC--CCSCEEEEEEEEETTCEEE--------ECTTC------
T ss_pred EEEEEEcCCcEeeeeEcCCCCEEEEEEeeeEEEEEEeccccccCCCceEEEEEecCCCEEE--------ECCCC------
Confidence 34456666654432 12346899999999988876665 554444 899999874 22322
Q ss_pred cceEEEEecceEEEEE
Q 037278 323 STRTVRTLTEVEGLAL 338 (449)
Q Consensus 323 s~~tv~Alt~t~l~~L 338 (449)
....++.++.+++.+
T Consensus 307 -~h~~~n~~~l~~l~f 321 (397)
T 2phl_A 307 -PVAIKATSNVNFTGF 321 (397)
T ss_dssp -CEEEEESSSEEEEEE
T ss_pred -eEEEEeCCCeEEEEE
Confidence 566777778887776
No 131
>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus}
Probab=29.57 E-value=61 Score=33.15 Aligned_cols=56 Identities=7% Similarity=0.099 Sum_probs=39.8
Q ss_pred HHhhcceEEeCCCCEEec-CCCCcCeEEEEEEeEEEEEEeeCCCeeEE--EecCCCeec
Q 037278 248 MCDSLKQVLYTAESYIQQ-EGDPVSEMFFITRGQLLTMKTTNRKRTGV--YLQAGDFFG 303 (449)
Q Consensus 248 L~~~l~~~~~~~ge~I~~-eGd~~~~myfI~~G~v~v~~~~~~G~e~~--~l~~Gd~fG 303 (449)
+---+....+.||-+.-- =.-.++++.+|++|.+++...+.+|+..+ .+.+||+|=
T Consensus 321 lgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~g~~~f~~~l~~GDV~v 379 (466)
T 3kgl_A 321 LRLSALRGSIRQNAMVLPQWNANANAVLYVTDGEAHVQVVNDNGDRVFDGQVSQGQLLS 379 (466)
T ss_dssp HTCEEEEEEEETTEEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEE
T ss_pred CceeeEEEEeecCcEeeeeECCCCCEEEEEEeceEEEEEEeCCCcEEEEeEecCCcEEE
Confidence 333455667777765422 12347899999999999987777787655 899999873
No 132
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=29.53 E-value=2.3e+02 Score=23.25 Aligned_cols=48 Identities=19% Similarity=0.361 Sum_probs=31.7
Q ss_pred ceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeec
Q 037278 253 KQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFG 303 (449)
Q Consensus 253 ~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fG 303 (449)
....+.||..+-..--+..++++|++|.+.+. . +|++...+.+||.+-
T Consensus 51 ~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~-~--~~~~~~~l~~Gd~i~ 98 (147)
T 2f4p_A 51 YDVVFEPGARTHWHSHPGGQILIVTRGKGFYQ-E--RGKPARILKKGDVVE 98 (147)
T ss_dssp EEEEECTTCEECSEECTTCEEEEEEEEEEEEE-E--TTSCCEEEETTCEEE
T ss_pred EEEEECCCCccCceECCCceEEEEEeCEEEEE-E--CCEEEEEECCCCEEE
Confidence 34566777766333334478999999999886 2 333312689999864
No 133
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=29.40 E-value=66 Score=25.19 Aligned_cols=46 Identities=7% Similarity=0.119 Sum_probs=29.0
Q ss_pred EEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeec
Q 037278 255 VLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFG 303 (449)
Q Consensus 255 ~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fG 303 (449)
..+.+|...-.---+..++++|++|.+.+. . +|++...+.+||.+=
T Consensus 32 ~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~-i--~~~~~~~l~~Gd~i~ 77 (117)
T 2b8m_A 32 IVLPRGEQMPKHYSNSYVHLIIIKGEMTLT-L--EDQEPHNYKEGNIVY 77 (117)
T ss_dssp EEEETTCBCCCEECSSCEEEEEEESEEEEE-E--TTSCCEEEETTCEEE
T ss_pred EEECCCCcCCCEeCCCcEEEEEEeCEEEEE-E--CCEEEEEeCCCCEEE
Confidence 455666654222224568999999999886 2 333332588999763
No 134
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=28.03 E-value=53 Score=28.65 Aligned_cols=32 Identities=16% Similarity=0.052 Sum_probs=24.2
Q ss_pred CCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeec
Q 037278 268 DPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFG 303 (449)
Q Consensus 268 d~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fG 303 (449)
..+++++||++|.+++.. +|++. .+.+||.+=
T Consensus 108 h~gEE~~yVLeG~v~vtl---~g~~~-~L~~Gds~~ 139 (166)
T 2vpv_A 108 FRTYITFHVIQGIVEVTV---CKNKF-LSVKGSTFQ 139 (166)
T ss_dssp CSEEEEEEEEESEEEEEE---TTEEE-EEETTCEEE
T ss_pred CCceEEEEEEEeEEEEEE---CCEEE-EEcCCCEEE
Confidence 346789999999999872 44433 799999864
No 135
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=27.64 E-value=71 Score=25.39 Aligned_cols=47 Identities=19% Similarity=0.168 Sum_probs=29.4
Q ss_pred ceEEeCCCCEEe--cCCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeec
Q 037278 253 KQVLYTAESYIQ--QEGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFG 303 (449)
Q Consensus 253 ~~~~~~~ge~I~--~eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fG 303 (449)
....++||..+- ..-+....+|+|++|.+.+. . +|++. .+.+||++=
T Consensus 29 ~~~~~~pg~~~~~~H~H~~~e~~~~vl~G~~~~~-i--~~~~~-~l~~Gd~i~ 77 (125)
T 3cew_A 29 SINHLPAGAGVPFVHSHKQNEEIYGILSGKGFIT-I--DGEKI-ELQAGDWLR 77 (125)
T ss_dssp EEEEECTTCBCSSEEEESSEEEEEEEEEEEEEEE-E--TTEEE-EEETTEEEE
T ss_pred EEEEECCCCCCCCCccCCCceEEEEEEeCEEEEE-E--CCEEE-EeCCCCEEE
Confidence 345667776542 22233345777999999876 2 34332 689999763
No 136
>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*
Probab=27.58 E-value=1e+02 Score=29.93 Aligned_cols=70 Identities=13% Similarity=0.028 Sum_probs=47.6
Q ss_pred CCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeecHHhHHHhhccCCCCCCCCCcceEEEEecc-eEEEEE
Q 037278 260 ESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFGEELLMWALETQSSSENLPISTRTVRTLTE-VEGLAL 338 (449)
Q Consensus 260 ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fGE~~l~~~l~~~~~~~~~p~s~~tv~Alt~-t~l~~L 338 (449)
|+.+-.--.+.+++++|++|.+++.. +|.+...+++||.+= -+... ++++.+.++ ..++.+
T Consensus 262 g~~~~~h~~~~~~~~~vleG~~~i~i---~g~~~~~l~~Gd~~~--------iPag~-------~h~~~~~~~~~~~l~~ 323 (350)
T 1juh_A 262 TVTVPTWSFPGACAFQVQEGRVVVQI---GDYAATELGSGDVAF--------IPGGV-------EFKYYSEAYFSKVLFV 323 (350)
T ss_dssp TSCCCCBCCSSCEEEEEEESCEEEEE---TTSCCEEECTTCEEE--------ECTTC-------CEEEEESSSSEEEEEE
T ss_pred CCCCCcccCCCcEEEEEEeeEEEEEE---CCeEEEEeCCCCEEE--------ECCCC-------CEEEEecCCeEEEEEE
Confidence 55665556788999999999999872 342223799999873 22222 778888755 777777
Q ss_pred cH--HHHHHHH
Q 037278 339 MA--DDLKFAA 347 (449)
Q Consensus 339 ~~--~df~~ll 347 (449)
.+ +.+...+
T Consensus 324 ~~g~~g~~~~~ 334 (350)
T 1juh_A 324 SSGSDGLDQNL 334 (350)
T ss_dssp EESSSSHHHHH
T ss_pred ecCccchhhee
Confidence 66 5665543
No 137
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=27.45 E-value=54 Score=32.74 Aligned_cols=77 Identities=5% Similarity=-0.002 Sum_probs=47.9
Q ss_pred ceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeecHHhHHHhhccCCCCCCCCCcceEEEEe--
Q 037278 253 KQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFGEELLMWALETQSSSENLPISTRTVRTL-- 330 (449)
Q Consensus 253 ~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fGE~~l~~~l~~~~~~~~~p~s~~tv~Al-- 330 (449)
....++||+..-..-....++|+|++|...+. .+|++ ..+++||+|- ..+. . .......
T Consensus 297 ~~~~l~PG~~~~~HrH~~~~v~~VleG~G~~~---V~ge~-~~~~~GD~~~-------iP~g-~-------~H~~~N~g~ 357 (394)
T 3bu7_A 297 SMQMLRPGEHTKAHRHTGNVIYNVAKGQGYSI---VGGKR-FDWSEHDIFC-------VPAW-T-------WHEHCNTQE 357 (394)
T ss_dssp EEEEECTTCBCCCEEESSCEEEEEEECCEEEE---ETTEE-EEECTTCEEE-------ECTT-C-------CEEEEECCS
T ss_pred EEEEECCCCcCCCcccCCcEEEEEEeCeEEEE---ECCEE-EEEeCCCEEE-------ECCC-C-------eEEeEeCCC
Confidence 34566677665544455678999999998554 35543 3799999874 2211 1 3444443
Q ss_pred -cceEEEEEcHHHHHHHHH
Q 037278 331 -TEVEGLALMADDLKFAAS 348 (449)
Q Consensus 331 -t~t~l~~L~~~df~~ll~ 348 (449)
+++.++.+.-..+.+.+.
T Consensus 358 ~e~~~ll~i~D~Pl~~~Lg 376 (394)
T 3bu7_A 358 RDDACLFSFNDFPVMEKLG 376 (394)
T ss_dssp SCCEEEEEEESHHHHHHTT
T ss_pred CCCeEEEEeeCHHHHHHhh
Confidence 467888887666655443
No 138
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=27.42 E-value=68 Score=25.72 Aligned_cols=46 Identities=13% Similarity=0.276 Sum_probs=29.9
Q ss_pred eEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeec
Q 037278 254 QVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFG 303 (449)
Q Consensus 254 ~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fG 303 (449)
...++||...-.---+..++++|++|.+++. . +|++. .+.+||.+=
T Consensus 52 ~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~-i--~~~~~-~l~~Gd~i~ 97 (126)
T 1vj2_A 52 LFTVEPGGLIDRHSHPWEHEIFVLKGKLTVL-K--EQGEE-TVEEGFYIF 97 (126)
T ss_dssp EEEEEEEEEEEEECCSSCEEEEEEESEEEEE-C--SSCEE-EEETTEEEE
T ss_pred EEEECCCCcCCceeCCCcEEEEEEEeEEEEE-E--CCEEE-EECCCCEEE
Confidence 3455666554332334679999999999876 2 33332 688998763
No 139
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=26.63 E-value=95 Score=28.82 Aligned_cols=48 Identities=10% Similarity=0.093 Sum_probs=33.8
Q ss_pred cceEEeCCCCEEec-CCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeec
Q 037278 252 LKQVLYTAESYIQQ-EGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFG 303 (449)
Q Consensus 252 l~~~~~~~ge~I~~-eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fG 303 (449)
+....+.||..+-. .--...++++|++|.+.+. . +|++ ..+++||++=
T Consensus 184 ~~~~~l~pg~~~~~~H~H~~~E~~yVl~G~~~~~-i--~~~~-~~l~~GD~i~ 232 (274)
T 1sef_A 184 MHILSFEPGASHAYIETHVQEHGAYLISGQGMYN-L--DNEW-YPVEKGDYIF 232 (274)
T ss_dssp EEEEEECTTCBCSSCBCCSCCEEEEEEECEEEEE-E--TTEE-EEEETTCEEE
T ss_pred EEEEEECCCCccCcceeccCeEEEEEEeCEEEEE-E--CCEE-EEECCCCEEE
Confidence 34567888887643 3335679999999999987 2 3433 3799999864
No 140
>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*
Probab=26.58 E-value=84 Score=30.49 Aligned_cols=36 Identities=17% Similarity=0.321 Sum_probs=26.1
Q ss_pred CCcCeEEEEEEeEEEEEEeeCCCeeEE-EecCCCeec
Q 037278 268 DPVSEMFFITRGQLLTMKTTNRKRTGV-YLQAGDFFG 303 (449)
Q Consensus 268 d~~~~myfI~~G~v~v~~~~~~G~e~~-~l~~Gd~fG 303 (449)
...+++++|++|.+++.....+|.... .+.+||++-
T Consensus 69 ~~~~E~~~Vl~G~~~~~v~~~~g~~~~~~L~~GD~v~ 105 (350)
T 1juh_A 69 QKHYENFYCNKGSFQLWAQSGNETQQTRVLSSGDYGS 105 (350)
T ss_dssp SSCEEEEEEEESEEEEEEEETTSCCEEEEEETTCEEE
T ss_pred CCceEEEEEEEEEEEEEECCcCCceEEEEECCCCEEE
Confidence 336799999999999984432454333 899999863
No 141
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=24.93 E-value=1.1e+02 Score=28.67 Aligned_cols=51 Identities=14% Similarity=0.088 Sum_probs=37.8
Q ss_pred HhhcceEEeCCCCEEe-cCCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeec
Q 037278 249 CDSLKQVLYTAESYIQ-QEGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFG 303 (449)
Q Consensus 249 ~~~l~~~~~~~ge~I~-~eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fG 303 (449)
.-.+...++.||..+= .+--.-.+-++|++|+.... .+|+.. .+++||++=
T Consensus 185 d~~~~~~t~~PG~~~p~~e~H~~eh~~~vL~G~g~y~---l~~~~~-~V~~GD~i~ 236 (266)
T 4e2q_A 185 DFNIHTMDFQPGEFLNVKEVHYNQHGLLLLEGQGIYR---LGDNWY-PVQAGDVIW 236 (266)
T ss_dssp SEEEEEEEECTTCBCSSCCCCSCCEEEEEEECEEEEE---ETTEEE-EEETTCEEE
T ss_pred ceEEEEEEECCCcCcCCceEcccceEEEEEeceEEEE---ECCEEE-EecCCCEEE
Confidence 3346678899999984 46666779999999998865 344333 689999864
No 142
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A
Probab=24.64 E-value=1.7e+02 Score=28.90 Aligned_cols=75 Identities=16% Similarity=0.137 Sum_probs=51.6
Q ss_pred EEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeecHHhHHHhhccCCCCCCCCCcceEEEEecceE
Q 037278 255 VLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFGEELLMWALETQSSSENLPISTRTVRTLTEVE 334 (449)
Q Consensus 255 ~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fGE~~l~~~l~~~~~~~~~p~s~~tv~Alt~t~ 334 (449)
..+++|+..-..-..+..+|.|.+|.-.+.. +|++ +..++||.|- +-+. ...+..+.+++.
T Consensus 284 ~~L~pG~~t~~hRht~s~Vy~V~eG~G~~~I---~~~~-~~w~~gD~fv-------vP~w--------~~h~~~n~~~a~ 344 (368)
T 3nw4_A 284 HRLRAGTETATRNEVGSTVFQVFEGAGAVVM---NGET-TKLEKGDMFV-------VPSW--------VPWSLQAETQFD 344 (368)
T ss_dssp EEECTTCBCCCEEESSCEEEEEEESCEEEEE---TTEE-EEECTTCEEE-------ECTT--------CCEEEEESSSEE
T ss_pred EEECCCCccCCeeccccEEEEEEeCcEEEEE---CCEE-EEecCCCEEE-------ECCC--------CcEEEEeCCCEE
Confidence 4445555543333556789999999988762 4433 3799999985 2211 267778889999
Q ss_pred EEEEcHHHHHHHHH
Q 037278 335 GLALMADDLKFAAS 348 (449)
Q Consensus 335 l~~L~~~df~~ll~ 348 (449)
++.++-.-+.+-+.
T Consensus 345 Lf~~~D~Pl~~~LG 358 (368)
T 3nw4_A 345 LFRFSDAPIMEALS 358 (368)
T ss_dssp EEEEESHHHHHHTT
T ss_pred EEEEeCHHHHHHhC
Confidence 99999887776554
No 143
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A
Probab=24.13 E-value=68 Score=25.97 Aligned_cols=32 Identities=13% Similarity=0.198 Sum_probs=21.5
Q ss_pred cCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeec
Q 037278 270 VSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFG 303 (449)
Q Consensus 270 ~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fG 303 (449)
..++++|++|.+.+. ...+|++. .+.+||++-
T Consensus 59 ~~e~~~vl~G~~~~~-~~~~~~~~-~l~~Gd~~~ 90 (145)
T 3ht1_A 59 WEHEIYVLEGSMGLV-LPDQGRTE-EVGPGEAIF 90 (145)
T ss_dssp SCEEEEEEEECEEEE-EGGGTEEE-EECTTCEEE
T ss_pred CceEEEEEEeEEEEE-EeECCEEE-EECCCCEEE
Confidence 445677999999875 22344332 799999763
No 144
>1vr3_A Acireductone dioxygenase; 13543033, structural genomics, JOI for structural genomics, JCSG, protein structure initiative oxidoreductase; 2.06A {Mus musculus} SCOP: b.82.1.6
Probab=23.78 E-value=1.1e+02 Score=27.17 Aligned_cols=34 Identities=15% Similarity=0.131 Sum_probs=24.1
Q ss_pred cCeEEEEEEeEEEEEEeeCCCeeEE-EecCCCeec
Q 037278 270 VSEMFFITRGQLLTMKTTNRKRTGV-YLQAGDFFG 303 (449)
Q Consensus 270 ~~~myfI~~G~v~v~~~~~~G~e~~-~l~~Gd~fG 303 (449)
.+++++|++|.........+|+... .+++||++-
T Consensus 104 ~~Ei~yVleG~G~f~i~d~~d~~~~i~v~~GDlIi 138 (191)
T 1vr3_A 104 DEEIRYILEGSGYFDVRDKEDKWIRISMEKGDMIT 138 (191)
T ss_dssp SCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEEE
T ss_pred cceEEEEEeceEEEEECCCCCeEEEEEECCCCEEE
Confidence 3689999999998873333344432 789999873
No 145
>4afm_A Endoglucanase CEL5A; hydrolase, carbohydrate binding module, family 5 glycoside H; HET: MSE; 1.25A {Eubacterium cellulosolvens}
Probab=23.75 E-value=24 Score=28.12 Aligned_cols=35 Identities=26% Similarity=0.349 Sum_probs=29.9
Q ss_pred Eec-cceeecChHHHHHhcccccc-hhhhhhccCcch
Q 037278 129 SLL-AGNLHKTVRESAIKYFMGFF-TIDLVAILPLPQ 163 (449)
Q Consensus 129 ~~~-~G~lV~d~k~Ia~~Ylk~~F-~~Dlls~lP~~~ 163 (449)
||+ +|.-|.-..+||+.|-...| -+|-+++=|+|.
T Consensus 78 yyvvdgtavftkeqiakaygsddfs~ldyi~vkplps 114 (134)
T 4afm_A 78 YYVVDGTAVFTKEQIAKAYGSDDFSDLDYIGVKPLPS 114 (134)
T ss_dssp SEEETTEEEEEHHHHHHHHTSSCCTTCCEEEEEECCC
T ss_pred eEEEcceEEecHHHHHHHhCCCcccCcceEEeecCCc
Confidence 444 99999999999999999866 489999988864
No 146
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}
Probab=23.57 E-value=1.5e+02 Score=24.36 Aligned_cols=49 Identities=6% Similarity=-0.054 Sum_probs=29.4
Q ss_pred eEEeCCCCEEec-CCCCcCeEEEEEEeEEEEEEeeCCCee--EEEecCCCee
Q 037278 254 QVLYTAESYIQQ-EGDPVSEMFFITRGQLLTMKTTNRKRT--GVYLQAGDFF 302 (449)
Q Consensus 254 ~~~~~~ge~I~~-eGd~~~~myfI~~G~v~v~~~~~~G~e--~~~l~~Gd~f 302 (449)
...++||..+-. .-+..+++++|++|.+.+......+.. ...+.+||.+
T Consensus 47 ~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~~~~~~~~~~~~l~~Gd~i 98 (148)
T 2oa2_A 47 LMSIQVGEDIGLEIHPHLDQFLRVEEGRGLVQMGHRQDNLHFQEEVFDDYAI 98 (148)
T ss_dssp EEEECTTCBCCCBCCTTCEEEEEEEESEEEEEEESBTTBCCEEEEEETTCEE
T ss_pred EEEECCCCccCceECCCCcEEEEEEeCEEEEEECCccccceeeEEECCCCEE
Confidence 345677765422 223346899999999998732111110 1268999975
No 147
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=23.57 E-value=1.9e+02 Score=26.16 Aligned_cols=46 Identities=7% Similarity=-0.090 Sum_probs=32.6
Q ss_pred eEEeCC-CCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeec
Q 037278 254 QVLYTA-ESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFG 303 (449)
Q Consensus 254 ~~~~~~-ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fG 303 (449)
...++| |..+-..--+..++++|++|.+++. . +|++. .+.+||.+-
T Consensus 149 ~~~~~p~g~~~~~H~H~~~e~~~Vl~G~~~~~--i-~~~~~-~l~~Gd~i~ 195 (243)
T 3h7j_A 149 LAKIPGNGGEMPFHKHRNEQIGICIGGGYDMT--V-EGCTV-EMKFGTAYF 195 (243)
T ss_dssp EEEECTTTEEEEEECCSSEEEEEECSSCEEEE--E-TTEEE-EECTTCEEE
T ss_pred EEEECCCCCcCCCEeCCCcEEEEEEECEEEEE--E-CCEEE-EECCCCEEE
Confidence 446788 7766544445678999999999986 2 33333 699999875
No 148
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=23.46 E-value=1e+02 Score=27.94 Aligned_cols=47 Identities=9% Similarity=0.081 Sum_probs=33.4
Q ss_pred cceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCee
Q 037278 252 LKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFF 302 (449)
Q Consensus 252 l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~f 302 (449)
+....+.||..+-.---+..++++|++|.+++. . +|++. .+.+||.+
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~-~--~~~~~-~l~~Gd~i 82 (243)
T 3h7j_A 36 VLMSYVPPHTNVEPHQHKEVQIGMVVSGELMMT-V--GDVTR-KMTALESA 82 (243)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEESEEEEE-E--TTEEE-EEETTTCE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEEeEEEEE-E--CCEEE-EECCCCEE
Confidence 344567888877554455788999999999987 2 34333 79999943
No 149
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=23.38 E-value=57 Score=26.83 Aligned_cols=46 Identities=11% Similarity=0.037 Sum_probs=32.3
Q ss_pred hhcCCCCCCCcchhhhhhhcHHH-HHHHHHHHHccc---cccCCccccccC
Q 037278 395 GEINRLPDSSPSLGATIYASRFA-ATTLRATRRIGT---RAFTGESSCHDN 441 (449)
Q Consensus 395 ~~~er~~~~~~~l~~~~~~sr~a-~~~~~~~~~~~~---~~~~~~~~~~~~ 441 (449)
.++++.| +..+|+...++||-+ .+|++.|.+.|- +.-+|-.++-..
T Consensus 33 ~pG~~LP-ser~La~~~gVSr~tVReAl~~L~~eGlv~~~~g~G~~V~~~~ 82 (134)
T 4ham_A 33 QEGEKIL-SIREFASRIGVNPNTVSKAYQELERQEVIITVKGKGTFIANQT 82 (134)
T ss_dssp CTTCEEC-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEECCCS
T ss_pred CCCCCCc-cHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEEcCcEEEEeCCc
Confidence 3444433 345899999999999 999999999995 333444454433
No 150
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=23.12 E-value=66 Score=23.14 Aligned_cols=28 Identities=7% Similarity=-0.064 Sum_probs=25.4
Q ss_pred CCcchhhhhhhcHHH-HHHHHHHHHcccc
Q 037278 403 SSPSLGATIYASRFA-ATTLRATRRIGTR 430 (449)
Q Consensus 403 ~~~~l~~~~~~sr~a-~~~~~~~~~~~~~ 430 (449)
+..+||..++.||-+ .+.++.|++.|-.
T Consensus 27 s~~eLA~~lglsr~tv~~~l~~L~~~G~I 55 (67)
T 2heo_A 27 AIFQLVKKCQVPKKTLNQVLYRLKKEDRV 55 (67)
T ss_dssp EHHHHHHHHCSCHHHHHHHHHHHHHTTSE
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCcE
Confidence 567899999999999 9999999999964
No 151
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=21.98 E-value=2.8e+02 Score=26.29 Aligned_cols=69 Identities=10% Similarity=0.025 Sum_probs=52.2
Q ss_pred cceEEeCCCCEEecCCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeecHHhHHHhhccCCCCCCCCCcceEEEEec
Q 037278 252 LKQVLYTAESYIQQEGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFGEELLMWALETQSSSENLPISTRTVRTLT 331 (449)
Q Consensus 252 l~~~~~~~ge~I~~eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fGE~~l~~~l~~~~~~~~~p~s~~tv~Alt 331 (449)
.+...|.+|+.+..+.+. +..+.+++|...+. .+|.+. .|++||..- +..+ ..++..+.+
T Consensus 209 teV~l~G~Ges~~~~~~~-d~wiWqLEGss~Vt---~~~q~~-~L~~~DsLL-------Ipa~--------~~y~~~r~~ 268 (286)
T 2qnk_A 209 TQVIAYGQGSSEGLRQNV-DVWLWQLEGSSVVT---MGGRRL-SLAPDDSLL-------VLAG--------TSYAWERTQ 268 (286)
T ss_dssp EEEEEECSEEEEECCCSS-CEEEEEEESCEEEE---ETTEEE-EECTTEEEE-------ECTT--------CCEEEEECT
T ss_pred eEEEEEcCCccccccCcC-cEEEEEEcCceEEE---ECCeEE-eccCCCEEE-------ecCC--------CeEEEEecC
Confidence 356679999999999988 99999999998754 344443 688988642 3322 278999999
Q ss_pred ceEEEEEcH
Q 037278 332 EVEGLALMA 340 (449)
Q Consensus 332 ~t~l~~L~~ 340 (449)
+|.++.+..
T Consensus 269 gsv~L~I~~ 277 (286)
T 2qnk_A 269 GSVALSVTQ 277 (286)
T ss_dssp TCEEEEEEE
T ss_pred CeEEEEEEE
Confidence 999988753
No 152
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=21.33 E-value=92 Score=28.59 Aligned_cols=48 Identities=13% Similarity=0.052 Sum_probs=33.0
Q ss_pred cceEEeCCCCEEec-CCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeec
Q 037278 252 LKQVLYTAESYIQQ-EGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFG 303 (449)
Q Consensus 252 l~~~~~~~ge~I~~-eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fG 303 (449)
+....++||..+-. .-....++++|++|.+++. .+|++. .+++||++=
T Consensus 181 ~~~~~~~pG~~~~~h~H~~~~E~~~Vl~G~~~~~---i~~~~~-~l~~GD~i~ 229 (261)
T 1rc6_A 181 MHILSFAPGASHGYIETHVQEHGAYILSGQGVYN---LDNNWI-PVKKGDYIF 229 (261)
T ss_dssp EEEEEECTTCCBEEEEEESSCEEEEEEESEEEEE---SSSCEE-EEETTCEEE
T ss_pred EEEEEECCCCccCcccCCCceEEEEEEEeEEEEE---ECCEEE-EeCCCCEEE
Confidence 35667888876532 2224578999999999976 234433 799999864
No 153
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=21.17 E-value=80 Score=30.44 Aligned_cols=27 Identities=22% Similarity=0.270 Sum_probs=25.3
Q ss_pred CCcchhhhhhhcHHH-HHHHHHHHHccc
Q 037278 403 SSPSLGATIYASRFA-ATTLRATRRIGT 429 (449)
Q Consensus 403 ~~~~l~~~~~~sr~a-~~~~~~~~~~~~ 429 (449)
+.++||..++.||-| .+.++.||+.|-
T Consensus 21 Sg~eLa~~lgvSr~aV~k~i~~L~~~G~ 48 (323)
T 3rkx_A 21 SGQSIAESLNISRTAVKKVIDQLKLEGC 48 (323)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 678999999999999 999999999995
No 154
>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}
Probab=21.04 E-value=1.2e+02 Score=24.18 Aligned_cols=31 Identities=23% Similarity=0.213 Sum_probs=22.8
Q ss_pred cCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeec
Q 037278 270 VSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFG 303 (449)
Q Consensus 270 ~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fG 303 (449)
..++++|++|.+++. .++|++ ..+.+||.+=
T Consensus 64 ~~E~~~vl~G~~~~~--~~~~~~-~~l~~Gd~~~ 94 (134)
T 2o8q_A 64 GFQLFYVLRGWVEFE--YEDIGA-VMLEAGGSAF 94 (134)
T ss_dssp SCEEEEEEESEEEEE--ETTTEE-EEEETTCEEE
T ss_pred CcEEEEEEeCEEEEE--ECCcEE-EEecCCCEEE
Confidence 379999999999987 233233 3799999763
No 155
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=20.54 E-value=81 Score=29.01 Aligned_cols=46 Identities=17% Similarity=0.289 Sum_probs=31.0
Q ss_pred eEEeCCCCEEecC-C-CCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeec
Q 037278 254 QVLYTAESYIQQE-G-DPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFG 303 (449)
Q Consensus 254 ~~~~~~ge~I~~e-G-d~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fG 303 (449)
...++||...-.. . ...+++++|++|.+++.. +|++. .+++||.+-
T Consensus 63 ~~~l~pg~~~~~~~~~~~~ee~~~Vl~G~l~~~~---~~~~~-~L~~Gd~~~ 110 (261)
T 1rc6_A 63 LVTLHQNGGNQQGFGGEGIETFLYVISGNITAKA---EGKTF-ALSEGGYLY 110 (261)
T ss_dssp EEEEEEEEEESSCSCCTTEEEEEEEEESEEEEEE---TTEEE-EEETTEEEE
T ss_pred EEEEcCCCccCCCCCCCCceEEEEEEEeEEEEEE---CCEEE-EECCCCEEE
Confidence 4566777655332 1 235689999999999872 44443 799999864
No 156
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*
Probab=20.16 E-value=1.3e+02 Score=28.20 Aligned_cols=46 Identities=13% Similarity=0.107 Sum_probs=32.5
Q ss_pred eEEeCCCCEEe-cCCCCcCeEEEEEEeEEEEEEeeCCCeeEEEecCCCeec
Q 037278 254 QVLYTAESYIQ-QEGDPVSEMFFITRGQLLTMKTTNRKRTGVYLQAGDFFG 303 (449)
Q Consensus 254 ~~~~~~ge~I~-~eGd~~~~myfI~~G~v~v~~~~~~G~e~~~l~~Gd~fG 303 (449)
.....+|...- +..+..+++++|++|.+++. . +|++ ..+.+||++=
T Consensus 50 ~~~~~pg~~~~~h~H~~~~e~~~Vl~G~~~~~-~--~~~~-~~l~~Gd~~~ 96 (337)
T 1y3t_A 50 LLSGGKGDAFPLHVHKDTHEGILVLDGKLELT-L--DGER-YLLISGDYAN 96 (337)
T ss_dssp EEEECTTCEEEEEECTTCCEEEEEEESCEEEE-E--TTEE-EEECTTCEEE
T ss_pred EEEeCCCCCCCceeCCCceEEEEEEECEEEEE-E--CCEE-EEECCCCEEE
Confidence 45678887653 33333789999999999987 2 3443 3799999863
Done!