BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037279
(327 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QB5|A Chain A, Crystal Structure Of Human Inositol 1,3,4-Trisphosphate
56-Kinase (Itpk1) In Complex With Adp And Mn2+
pdb|2QB5|B Chain B, Crystal Structure Of Human Inositol 1,3,4-Trisphosphate
56-Kinase (Itpk1) In Complex With Adp And Mn2+
Length = 347
Score = 125 bits (314), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 87/332 (26%), Positives = 158/332 (47%), Gaps = 41/332 (12%)
Query: 11 RIGYALAPKKGQSLIQPSLLTKASERGXXXXXXXXXXXXVEQGPFDCIVHKLY------- 63
R+GY L+ KK + L + +RG EQGP D I+HKL
Sbjct: 21 RVGYWLSEKKIKKLNFQAFAELCRKRGMEVVQLNLSRPIEEQGPLDVIIHKLTDVILEAD 80
Query: 64 -----GPDWTRQLQQFSSQNPNVPIIDSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVP 118
+ + Q++ +P ++D +I L +R E++ +++ + ++++ P
Sbjct: 81 QNDSQSLELVHRFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMEDDRICSP 140
Query: 119 NQVVVSEM---KSLTSIEDLKLTFPVIAKPLVADGSVKSHQMYLIFDSQGLESMTAPFVL 175
+ ++ + ++ +E LTFP I K VA G+ SH+M ++F+ +GL ++ P V+
Sbjct: 141 PFMELTSLCGDDTMRLLEKNGLTFPFICKTRVAHGT-NSHEMAIVFNQEGLNAIQPPCVV 199
Query: 176 QEFVNHGGFIFKVYVAGMNVKCVKRKSLPDISEEKLKSLKGFLPFSRISNLIDNDKKVHD 235
Q F+NH ++KV+V G + V+R SL + S F H+
Sbjct: 200 QNFINHNAVLYKVFVVGESYTVVQRPSLKNFSAGTSDRESIFF-------------NSHN 246
Query: 236 DGKKNSQGDEVDLESV----EMPSQSFLCELARGMREALGLNLFNFDVMRDARDSNRYLI 291
K S +L+ + E PS + EL+R +R+ALG++LF D++ + + + ++ +
Sbjct: 247 VSKPESSSVLTELDKIEGVFERPSDEVIRELSRALRQALGVSLFGIDIIINNQ-TGQHAV 305
Query: 292 IDVNYFPGYAKMPGYESIMTDFFLQVLNKSAV 323
ID+N FPGY +++FF +LN A
Sbjct: 306 IDINAFPGYEG-------VSEFFTDLLNHIAT 330
>pdb|2Q7D|A Chain A, Crystal Structure Of Human Inositol 1,3,4-Trisphosphate
56-Kinase (Itpk1) In Complex With Amppnp And Mn2+
pdb|2Q7D|B Chain B, Crystal Structure Of Human Inositol 1,3,4-Trisphosphate
56-Kinase (Itpk1) In Complex With Amppnp And Mn2+
Length = 346
Score = 125 bits (314), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 87/332 (26%), Positives = 158/332 (47%), Gaps = 41/332 (12%)
Query: 11 RIGYALAPKKGQSLIQPSLLTKASERGXXXXXXXXXXXXVEQGPFDCIVHKLY------- 63
R+GY L+ KK + L + +RG EQGP D I+HKL
Sbjct: 20 RVGYWLSEKKIKKLNFQAFAELCRKRGMEVVQLNLSRPIEEQGPLDVIIHKLTDVILEAD 79
Query: 64 -----GPDWTRQLQQFSSQNPNVPIIDSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVP 118
+ + Q++ +P ++D +I L +R E++ +++ + ++++ P
Sbjct: 80 QNDSQSLELVHRFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMEDDRICSP 139
Query: 119 NQVVVSEM---KSLTSIEDLKLTFPVIAKPLVADGSVKSHQMYLIFDSQGLESMTAPFVL 175
+ ++ + ++ +E LTFP I K VA G+ SH+M ++F+ +GL ++ P V+
Sbjct: 140 PFMELTSLCGDDTMRLLEKNGLTFPFICKTRVAHGT-NSHEMAIVFNQEGLNAIQPPCVV 198
Query: 176 QEFVNHGGFIFKVYVAGMNVKCVKRKSLPDISEEKLKSLKGFLPFSRISNLIDNDKKVHD 235
Q F+NH ++KV+V G + V+R SL + S F H+
Sbjct: 199 QNFINHNAVLYKVFVVGESYTVVQRPSLKNFSAGTSDRESIFF-------------NSHN 245
Query: 236 DGKKNSQGDEVDLESV----EMPSQSFLCELARGMREALGLNLFNFDVMRDARDSNRYLI 291
K S +L+ + E PS + EL+R +R+ALG++LF D++ + + + ++ +
Sbjct: 246 VSKPESSSVLTELDKIEGVFERPSDEVIRELSRALRQALGVSLFGIDIIINNQ-TGQHAV 304
Query: 292 IDVNYFPGYAKMPGYESIMTDFFLQVLNKSAV 323
ID+N FPGY +++FF +LN A
Sbjct: 305 IDINAFPGYEG-------VSEFFTDLLNHIAT 329
>pdb|2ODT|X Chain X, Structure Of Human Inositol 1,3,4-Trisphosphate 56-Kinase
Length = 328
Score = 122 bits (305), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 92/344 (26%), Positives = 160/344 (46%), Gaps = 47/344 (13%)
Query: 2 STQSQCQRFRIGYALAPKKGQSLIQPSLLTKASERGXXXXXXXXXXXXVEQGPFDCIVHK 61
S Q+ + R+GY L+ KK + L + +RG EQGP D I+HK
Sbjct: 1 SXQTFLKGKRVGYWLSEKKIKKLNFQAFAELCRKRGXEVVQLNLSRPIEEQGPLDVIIHK 60
Query: 62 LY------------GPDWTRQLQQFSSQNPNVPIIDSPDSIERLHNRISMLEVVTQLKLH 109
L + + Q++ +P ++D +I L +R E++ +++ +
Sbjct: 61 LTDVILEADQNDSQSLELVHRFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAY 120
Query: 110 FDNEKFGVPNQVVVSEMKSLTS------IEDLKLTFPVIAKPLVADGSVKSHQMYLIFDS 163
++++ P E+ SL +E LTFP I K VA G+ SH+ ++F+
Sbjct: 121 XEDDRICSPP---FXELTSLCGDDTXRLLEKNGLTFPFICKTRVAHGT-NSHEXAIVFNQ 176
Query: 164 QGLESMTAPFVLQEFVNHGGFIFKVYVAGMNVKCVKRKSLPDISEEKLKSLKGFLPFSRI 223
+GL ++ P V+Q F+NH ++KV+V G + V+R SL + S F
Sbjct: 177 EGLNAIQPPCVVQNFINHNAVLYKVFVVGESYTVVQRPSLKNFSAGTSDRESIFF----- 231
Query: 224 SNLIDNDKKVHDDGKKNSQGDEVDLESV----EMPSQSFLCELARGMREALGLNLFNFDV 279
H+ K S +L+ + E PS + EL+R +R+ALG++LF D+
Sbjct: 232 --------NSHNVSKPESSSVLTELDKIEGVFERPSDEVIRELSRALRQALGVSLFGIDI 283
Query: 280 MRDARDSNRYLIIDVNYFPGYAKMPGYESIMTDFFLQVLNKSAV 323
+ + + + ++ +ID+N FPGY +++FF +LN A
Sbjct: 284 IINNQ-TGQHAVIDINAFPGYEG-------VSEFFTDLLNHIAT 319
>pdb|1Z2N|X Chain X, Inositol 1,3,4-trisphosphate 5/6-kinase Complexed Mg2+/adp
pdb|1Z2O|X Chain X, Inositol 1,3,4-Trisphosphate 56-Kinase In Complex With
Mg2+ADPINS(1,3,4,6)P4
pdb|1Z2P|X Chain X, Inositol 1,3,4-Trisphosphate 56-Kinase In Complex With
Mg2+AMP- PcpINS(1,3,4)P3
Length = 324
Score = 81.3 bits (199), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 115/240 (47%), Gaps = 18/240 (7%)
Query: 70 QLQQFSSQNPNVPIIDSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVV-SEMKS 128
+++++ +P V ++S +H+ +S E + L + +PN V S+ +
Sbjct: 73 EMRKYEKDHPKVLFLES----SAIHDMMSSREEINALLI---KNNIPIPNSFSVKSKEEV 125
Query: 129 LTSIEDLKLTFPVIAKPLVADGSVKSHQMYLIFDSQGLESMTAPFVLQEFVNHGGFIFKV 188
+ ++ +L P I KP A G+ +HQM ++ + +G++ + P + Q ++NH I KV
Sbjct: 126 IQLLQSKQLILPFIVKPENAQGTFNAHQMKIVLEQEGIDDIHFPCLCQHYINHNNKIVKV 185
Query: 189 YVAGMNVKCVKRKSLPDISEEKLKS-------LKGFLPFSRISNLIDNDKKVHDDGKKNS 241
+ G +K R SLP++ +KS L+ L + +ID + + +
Sbjct: 186 FCIGNTLKWQTRTSLPNVHRCGIKSVDFNNQHLEDILSWPE--GVIDKQDIIENSANRFG 243
Query: 242 QGDEVDLESVEMPSQSFLCELARGMREALGLNLFNFDVMRDARDSNRYLIIDVNYFPGYA 301
D + + S++ + +LA +R ALG+ L D +++ N L++DVN FP Y
Sbjct: 244 SKILEDPILLNLTSEAEMRDLAYKVRCALGVQLCGIDFIKENEQGNP-LVVDVNVFPSYG 302
>pdb|2ZKR|NN Chain n, Structure Of A Mammalian Ribosomal 60s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 297
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 236 DGKKNSQGDEVDLESVEMPSQSFLCELARGM-REALGLNLFNFDVMRDARDSNRYLIIDV 294
+G+ GDE ++ES++ +F C L G+ R G +F ++ A D +
Sbjct: 120 EGQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFG--ALKGAVDGGLSIPHST 177
Query: 295 NYFPGY 300
FPGY
Sbjct: 178 KRFPGY 183
>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|B Chain B, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|C Chain C, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|D Chain D, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIC|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OID|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
Length = 301
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 22/128 (17%)
Query: 182 GGF--IFKVYVAGMNVKCVKRKSLPDISEEKLKSLKGFLPFSRISNLIDNDKKVHDDGKK 239
GGF ++K YV V K ++ DI+ E+LK + F ++ ++ V G
Sbjct: 36 GGFGVVYKGYVNNTTVAVKKLAAMVDITTEELK--QQFDQEIKVMAKCQHENLVELLG-F 92
Query: 240 NSQGDEVDLESVEMPSQSFL-----------------CELARGMREALGLNLFNFDVMRD 282
+S GD++ L V MP+ S L C++A+G + N + RD
Sbjct: 93 SSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHENHHIHRD 152
Query: 283 ARDSNRYL 290
+ +N L
Sbjct: 153 IKSANILL 160
>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4
pdb|2NRU|B Chain B, Crystal Structure Of Irak-4
pdb|2NRU|C Chain C, Crystal Structure Of Irak-4
pdb|2NRU|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 22/128 (17%)
Query: 182 GGF--IFKVYVAGMNVKCVKRKSLPDISEEKLKSLKGFLPFSRISNLIDNDKKVHDDGKK 239
GGF ++K YV V K ++ DI+ E+LK + F ++ ++ V G
Sbjct: 42 GGFGVVYKGYVNNTTVAVKKLAAMVDITTEELK--QQFDQEIKVMAKCQHENLVELLG-F 98
Query: 240 NSQGDEVDLESVEMPSQSFL-----------------CELARGMREALGLNLFNFDVMRD 282
+S GD++ L V MP+ S L C++A+G + N + RD
Sbjct: 99 SSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHENHHIHRD 158
Query: 283 ARDSNRYL 290
+ +N L
Sbjct: 159 IKSANILL 166
>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4
pdb|2NRY|B Chain B, Crystal Structure Of Irak-4
pdb|2NRY|C Chain C, Crystal Structure Of Irak-4
pdb|2NRY|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 22/128 (17%)
Query: 182 GGF--IFKVYVAGMNVKCVKRKSLPDISEEKLKSLKGFLPFSRISNLIDNDKKVHDDGKK 239
GGF ++K YV V K ++ DI+ E+LK + F ++ ++ V G
Sbjct: 42 GGFGVVYKGYVNNTTVAVKKLAAMVDITTEELK--QQFDQEIKVMAKCQHENLVELLG-F 98
Query: 240 NSQGDEVDLESVEMPSQSFL-----------------CELARGMREALGLNLFNFDVMRD 282
+S GD++ L V MP+ S L C++A+G + N + RD
Sbjct: 99 SSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHENHHIHRD 158
Query: 283 ARDSNRYL 290
+ +N L
Sbjct: 159 IKSANILL 166
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,992,749
Number of Sequences: 62578
Number of extensions: 345396
Number of successful extensions: 934
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 919
Number of HSP's gapped (non-prelim): 13
length of query: 327
length of database: 14,973,337
effective HSP length: 99
effective length of query: 228
effective length of database: 8,778,115
effective search space: 2001410220
effective search space used: 2001410220
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)