Query 037279
Match_columns 327
No_of_seqs 138 out of 536
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 10:37:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037279.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037279hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05770 Ins134_P3_kin: Inosit 100.0 5.2E-81 1.1E-85 585.4 23.7 305 1-316 1-307 (307)
2 PLN02941 inositol-tetrakisphos 100.0 2.4E-77 5.1E-82 567.4 33.5 314 1-322 13-328 (328)
3 PRK10446 ribosomal protein S6 100.0 2.6E-30 5.7E-35 244.4 27.2 251 26-324 15-296 (300)
4 COG0189 RimK Glutathione synth 100.0 3.4E-30 7.3E-35 245.0 24.8 221 54-320 78-317 (318)
5 TIGR02144 LysX_arch Lysine bio 100.0 7.5E-30 1.6E-34 238.0 26.1 245 26-319 12-280 (280)
6 TIGR00768 rimK_fam alpha-L-glu 100.0 5.5E-28 1.2E-32 224.1 25.3 251 12-313 2-276 (277)
7 PF08443 RimK: RimK-like ATP-g 100.0 9.1E-28 2E-32 212.9 15.7 175 94-314 2-190 (190)
8 TIGR01380 glut_syn glutathione 99.9 3.7E-24 7.9E-29 203.7 23.6 249 11-317 2-311 (312)
9 PRK01372 ddl D-alanine--D-alan 99.9 1.7E-23 3.6E-28 197.7 27.3 251 11-303 6-275 (304)
10 PRK12458 glutathione synthetas 99.9 1.8E-23 3.9E-28 201.0 23.1 246 22-320 9-327 (338)
11 PRK05246 glutathione synthetas 99.9 2.4E-23 5.3E-28 198.4 23.9 253 11-320 3-315 (316)
12 TIGR03103 trio_acet_GNAT GNAT- 99.9 2E-22 4.3E-27 204.8 26.6 251 27-314 245-540 (547)
13 TIGR01205 D_ala_D_alaTIGR D-al 99.9 5.3E-22 1.1E-26 188.2 25.3 239 25-304 19-291 (315)
14 PRK14571 D-alanyl-alanine synt 99.9 9.9E-21 2.1E-25 178.8 25.1 230 29-306 24-273 (299)
15 PRK02471 bifunctional glutamat 99.9 6.2E-21 1.3E-25 199.6 25.7 259 23-314 431-750 (752)
16 PRK14016 cyanophycin synthetas 99.9 6.2E-21 1.3E-25 199.7 23.9 245 26-302 162-451 (727)
17 PRK14569 D-alanyl-alanine synt 99.9 2.3E-20 5.1E-25 176.3 23.2 250 9-305 3-272 (296)
18 PRK01966 ddl D-alanyl-alanine 99.9 4.1E-20 8.8E-25 177.4 23.6 257 9-304 3-307 (333)
19 PRK14570 D-alanyl-alanine synt 99.9 4.2E-20 9.1E-25 179.3 22.9 218 54-305 87-323 (364)
20 TIGR02291 rimK_rel_E_lig alpha 99.8 1E-19 2.2E-24 172.4 18.5 199 82-301 24-273 (317)
21 PRK14568 vanB D-alanine--D-lac 99.8 8.7E-19 1.9E-23 168.9 25.1 256 9-304 3-316 (343)
22 TIGR02068 cya_phycin_syn cyano 99.8 4.6E-19 9.9E-24 188.9 25.0 246 25-303 160-451 (864)
23 PRK14572 D-alanyl-alanine synt 99.8 6.1E-19 1.3E-23 170.2 22.6 196 70-306 105-323 (347)
24 TIGR01435 glu_cys_lig_rel glut 99.8 1.6E-18 3.4E-23 179.7 21.6 258 23-314 419-736 (737)
25 PF07478 Dala_Dala_lig_C: D-al 99.7 2.1E-17 4.4E-22 148.2 14.4 164 113-307 5-184 (203)
26 PRK14573 bifunctional D-alanyl 99.7 4.2E-16 9.2E-21 165.6 24.8 265 8-304 450-762 (809)
27 TIGR01142 purT phosphoribosylg 99.7 4.2E-16 9.1E-21 151.6 21.6 227 26-304 11-278 (380)
28 KOG1057 Arp2/3 complex-interac 99.7 1.5E-16 3.3E-21 160.2 16.8 259 8-312 39-337 (1018)
29 TIGR01161 purK phosphoribosyla 99.7 2.3E-15 5.1E-20 145.3 23.9 227 26-302 11-269 (352)
30 PRK06849 hypothetical protein; 99.7 2.9E-15 6.4E-20 146.5 23.9 222 28-299 19-277 (389)
31 PRK06019 phosphoribosylaminoim 99.7 1.3E-15 2.8E-20 148.4 21.2 237 11-303 4-272 (372)
32 PF13535 ATP-grasp_4: ATP-gras 99.7 3.1E-16 6.8E-21 136.2 13.9 165 92-299 1-180 (184)
33 PRK12767 carbamoyl phosphate s 99.7 2.1E-15 4.6E-20 143.5 19.6 218 28-299 14-271 (326)
34 PRK07206 hypothetical protein; 99.7 5.6E-15 1.2E-19 145.5 22.6 229 27-304 15-294 (416)
35 COG1181 DdlA D-alanine-D-alani 99.7 8E-15 1.7E-19 139.6 21.6 247 26-307 23-295 (317)
36 PLN02948 phosphoribosylaminoim 99.7 1.8E-14 3.8E-19 147.6 24.7 241 7-302 20-294 (577)
37 PRK09288 purT phosphoribosylgl 99.7 2E-14 4.4E-19 140.5 22.6 240 8-304 11-291 (395)
38 PRK08462 biotin carboxylase; V 99.6 8E-15 1.7E-19 145.9 18.8 226 26-300 16-297 (445)
39 TIGR01369 CPSaseII_lrg carbamo 99.6 3.5E-14 7.6E-19 154.5 24.7 225 26-299 577-842 (1050)
40 PRK05294 carB carbamoyl phosph 99.6 1.9E-14 4.2E-19 156.8 22.4 227 24-299 575-842 (1066)
41 PRK12833 acetyl-CoA carboxylas 99.6 6.1E-14 1.3E-18 140.6 22.1 225 26-300 17-298 (467)
42 PRK13790 phosphoribosylamine-- 99.6 1.4E-13 3.1E-18 134.5 23.9 215 26-300 16-252 (379)
43 PRK05586 biotin carboxylase; V 99.6 5.5E-14 1.2E-18 140.1 21.2 177 79-301 98-296 (447)
44 TIGR00514 accC acetyl-CoA carb 99.6 6.2E-14 1.4E-18 139.8 21.2 224 26-300 14-295 (449)
45 PRK08591 acetyl-CoA carboxylas 99.6 8.7E-14 1.9E-18 138.6 21.0 227 26-300 14-295 (451)
46 PRK08654 pyruvate carboxylase 99.6 9.3E-14 2E-18 140.2 20.9 224 27-301 15-295 (499)
47 PRK02186 argininosuccinate lya 99.6 1.9E-13 4.2E-18 146.6 23.7 224 28-300 18-279 (887)
48 PLN02735 carbamoyl-phosphate s 99.6 1.5E-13 3.2E-18 149.8 22.3 235 24-304 44-325 (1102)
49 PRK07178 pyruvate carboxylase 99.6 2.6E-13 5.6E-18 136.3 21.2 223 27-300 15-294 (472)
50 PRK08463 acetyl-CoA carboxylas 99.5 8.1E-13 1.8E-17 132.9 22.6 226 26-301 14-296 (478)
51 PLN02735 carbamoyl-phosphate s 99.5 7.3E-13 1.6E-17 144.4 23.7 225 29-299 600-877 (1102)
52 PRK12815 carB carbamoyl phosph 99.5 8.5E-13 1.9E-17 143.9 24.2 222 28-299 580-840 (1068)
53 TIGR01235 pyruv_carbox pyruvat 99.5 4.3E-13 9.2E-18 145.9 20.9 223 28-300 13-295 (1143)
54 PRK05294 carB carbamoyl phosph 99.5 4E-13 8.8E-18 146.6 20.5 230 26-299 30-305 (1066)
55 TIGR01369 CPSaseII_lrg carbamo 99.5 3.9E-13 8.5E-18 146.4 20.1 232 24-299 27-303 (1050)
56 PLN02257 phosphoribosylamine-- 99.5 1.8E-12 3.9E-17 128.8 21.6 110 70-193 77-200 (434)
57 PRK06111 acetyl-CoA carboxylas 99.5 1.9E-12 4.1E-17 128.9 21.3 225 27-300 15-295 (450)
58 PRK00885 phosphoribosylamine-- 99.5 2.5E-12 5.4E-17 127.1 21.8 125 54-193 62-200 (420)
59 PF02655 ATP-grasp_3: ATP-gras 99.5 1.1E-13 2.3E-18 119.7 9.9 151 93-298 1-158 (161)
60 PF15632 ATPgrasp_Ter: ATP-gra 99.5 2.2E-12 4.8E-17 123.2 19.8 187 54-299 66-282 (329)
61 PRK06524 biotin carboxylase-li 99.5 1.9E-12 4.1E-17 128.9 17.7 188 71-300 118-325 (493)
62 PRK12815 carB carbamoyl phosph 99.5 3.7E-12 8.1E-17 138.9 21.1 235 23-303 27-306 (1068)
63 PRK13789 phosphoribosylamine-- 99.4 1.7E-11 3.7E-16 121.6 22.7 103 79-194 91-207 (426)
64 TIGR00877 purD phosphoribosyla 99.4 1.6E-11 3.5E-16 121.3 21.4 124 54-192 64-201 (423)
65 PRK12999 pyruvate carboxylase; 99.4 7.7E-12 1.7E-16 136.6 20.7 224 26-300 17-299 (1146)
66 COG0439 AccC Biotin carboxylas 99.4 4.6E-11 1E-15 118.3 19.7 180 69-297 89-292 (449)
67 TIGR02712 urea_carbox urea car 99.3 8.2E-11 1.8E-15 129.3 22.1 176 79-300 97-294 (1201)
68 PRK06395 phosphoribosylamine-- 99.3 7.4E-10 1.6E-14 110.2 22.8 204 54-299 65-294 (435)
69 COG0458 CarB Carbamoylphosphat 99.2 5.6E-10 1.2E-14 107.8 18.8 228 29-299 21-291 (400)
70 COG1821 Predicted ATP-utilizin 99.2 4.3E-10 9.4E-15 102.0 16.3 151 86-299 105-257 (307)
71 PF02750 Synapsin_C: Synapsin, 99.2 4.4E-10 9.6E-15 98.4 14.0 168 85-297 1-177 (203)
72 PF02786 CPSase_L_D2: Carbamoy 99.2 1.9E-10 4.1E-15 103.8 11.2 157 95-299 1-181 (211)
73 PRK05784 phosphoribosylamine-- 99.1 9.6E-09 2.1E-13 103.5 22.9 101 79-193 92-217 (486)
74 PF02955 GSH-S_ATP: Prokaryoti 99.1 9.1E-10 2E-14 96.2 11.8 138 116-297 11-161 (173)
75 COG0026 PurK Phosphoribosylami 99.1 8.8E-09 1.9E-13 98.6 19.4 224 29-302 16-271 (375)
76 COG0027 PurT Formate-dependent 99.0 1.1E-08 2.3E-13 95.6 16.6 228 28-304 26-291 (394)
77 PF14398 ATPgrasp_YheCD: YheC/ 99.0 3.5E-08 7.6E-13 91.9 18.4 187 75-306 3-241 (262)
78 PF02222 ATP-grasp: ATP-grasp 98.9 9E-09 2E-13 90.0 11.0 150 113-299 4-162 (172)
79 COG2232 Predicted ATP-dependen 98.9 1.4E-07 3E-12 88.7 16.8 223 25-304 20-278 (389)
80 PF14397 ATPgrasp_ST: Sugar-tr 98.8 1E-06 2.2E-11 83.2 19.9 193 85-302 16-264 (285)
81 PRK13278 purP 5-formaminoimida 98.8 4.4E-07 9.5E-12 88.1 17.7 166 9-201 18-225 (358)
82 PRK13277 5-formaminoimidazole- 98.7 7.3E-07 1.6E-11 86.0 15.4 167 93-296 124-317 (366)
83 KOG0238 3-Methylcrotonyl-CoA c 98.7 1.5E-06 3.2E-11 85.8 17.6 171 79-297 94-288 (670)
84 COG3919 Predicted ATP-grasp en 98.7 6.6E-08 1.4E-12 89.7 7.7 173 80-299 100-289 (415)
85 COG1038 PycA Pyruvate carboxyl 98.6 4.5E-06 9.8E-11 86.2 18.8 168 79-296 104-297 (1149)
86 KOG3895 Synaptic vesicle prote 98.6 1.1E-06 2.4E-11 83.1 12.8 217 55-318 156-390 (488)
87 COG4770 Acetyl/propionyl-CoA c 98.5 1.9E-06 4.1E-11 86.2 13.0 170 79-296 98-291 (645)
88 KOG0369 Pyruvate carboxylase [ 98.4 1.1E-05 2.4E-10 81.9 16.0 220 9-297 79-324 (1176)
89 PF03133 TTL: Tubulin-tyrosine 98.3 2.3E-06 4.9E-11 80.7 9.4 106 85-193 11-127 (292)
90 COG0151 PurD Phosphoribosylami 98.1 0.00045 9.8E-09 67.6 19.9 140 26-195 52-205 (428)
91 PF01071 GARS_A: Phosphoribosy 98.0 6.2E-05 1.4E-09 67.0 10.8 88 95-195 2-105 (194)
92 KOG0370 Multifunctional pyrimi 97.7 0.00013 2.9E-09 76.7 8.3 180 80-304 1017-1216(1435)
93 TIGR01016 sucCoAbeta succinyl- 97.5 0.00024 5.2E-09 69.8 7.5 90 97-195 6-117 (386)
94 PRK00696 sucC succinyl-CoA syn 97.3 0.00053 1.2E-08 67.4 7.6 93 95-196 4-118 (388)
95 PF14305 ATPgrasp_TupA: TupA-l 97.0 0.1 2.2E-06 48.0 18.2 180 85-301 10-221 (239)
96 PF14403 CP_ATPgrasp_2: Circul 96.9 0.0034 7.3E-08 62.6 8.3 147 25-181 201-385 (445)
97 KOG0368 Acetyl-CoA carboxylase 96.6 0.022 4.8E-07 63.0 12.3 185 73-295 156-374 (2196)
98 PF13549 ATP-grasp_5: ATP-gras 96.3 0.0035 7.5E-08 57.1 3.7 94 94-196 10-123 (222)
99 PF14243 DUF4343: Domain of un 96.1 0.25 5.5E-06 41.1 13.3 109 139-299 2-117 (130)
100 PF08442 ATP-grasp_2: ATP-gras 94.5 0.15 3.3E-06 45.7 7.6 86 98-191 6-113 (202)
101 KOG0237 Glycinamide ribonucleo 94.4 3.3 7.1E-05 42.7 17.2 137 26-193 57-207 (788)
102 PHA02117 glutathionylspermidin 93.6 2.1 4.5E-05 42.4 14.0 179 10-203 177-380 (397)
103 PRK14046 malate--CoA ligase su 93.5 0.31 6.8E-06 48.1 8.2 89 98-195 7-117 (392)
104 KOG2158 Tubulin-tyrosine ligas 91.2 0.14 3.1E-06 50.8 2.5 76 115-195 203-286 (565)
105 KOG2157 Predicted tubulin-tyro 91.1 0.24 5.3E-06 50.2 4.1 57 136-195 197-271 (497)
106 COG0045 SucC Succinyl-CoA synt 89.7 1.3 2.7E-05 43.4 7.5 82 99-188 8-108 (387)
107 PRK10507 bifunctional glutathi 89.7 6 0.00013 41.4 12.9 163 21-202 391-600 (619)
108 PF07065 D123: D123; InterPro 88.6 2.5 5.5E-05 40.2 8.7 93 170-302 149-243 (299)
109 PF02951 GSH-S_N: Prokaryotic 87.1 2 4.4E-05 35.2 6.1 79 11-91 2-119 (119)
110 COG1759 5-formaminoimidazole-4 84.6 1.2 2.6E-05 42.6 4.0 66 95-180 124-203 (361)
111 PLN00124 succinyl-CoA ligase [ 82.1 1.7 3.6E-05 43.5 4.1 43 97-147 33-78 (422)
112 KOG2156 Tubulin-tyrosine ligas 79.1 2.5 5.4E-05 42.9 4.2 72 116-191 282-360 (662)
113 KOG2156 Tubulin-tyrosine ligas 78.7 1.7 3.7E-05 44.1 2.9 47 272-320 476-526 (662)
114 PLN02235 ATP citrate (pro-S)-l 75.1 13 0.00028 37.1 8.0 70 113-182 23-114 (423)
115 KOG0370 Multifunctional pyrimi 71.2 8.1 0.00018 42.1 5.7 235 23-299 397-672 (1435)
116 PF02729 OTCace_N: Aspartate/o 52.3 58 0.0013 27.3 6.7 71 8-85 38-121 (142)
117 PF04174 CP_ATPgrasp_1: A circ 43.1 27 0.0006 33.7 3.7 27 271-299 67-93 (330)
118 TIGR02049 gshA_ferroox glutama 41.0 68 0.0015 31.6 5.9 59 140-201 258-340 (403)
119 PF02310 B12-binding: B12 bind 39.1 1.2E+02 0.0027 23.6 6.5 36 13-48 4-39 (121)
120 KOG2157 Predicted tubulin-tyro 37.8 51 0.0011 33.7 4.8 34 273-308 378-411 (497)
121 PF13380 CoA_binding_2: CoA bi 36.9 1.8E+02 0.004 23.2 7.2 75 12-87 3-88 (116)
122 COG1181 DdlA D-alanine-D-alani 35.7 5.4 0.00012 38.3 -2.4 107 80-199 36-156 (317)
123 PF04556 DpnII: DpnII restrict 35.6 62 0.0013 30.7 4.7 34 264-299 179-218 (286)
124 PF12058 DUF3539: Protein of u 35.6 23 0.0005 27.3 1.5 20 176-195 3-24 (88)
125 PRK12562 ornithine carbamoyltr 33.2 1.9E+02 0.0041 28.0 7.7 70 9-85 45-127 (334)
126 COG0754 Gsp Glutathionylspermi 32.9 26 0.00056 34.2 1.7 176 9-201 170-368 (387)
127 PF08886 GshA: Glutamate-cyste 31.6 1.8E+02 0.0039 28.8 7.2 59 140-201 261-343 (404)
128 PRK03515 ornithine carbamoyltr 30.0 2E+02 0.0044 27.8 7.3 70 9-85 45-127 (336)
129 PF08532 Glyco_hydro_42M: Beta 28.8 71 0.0015 28.3 3.8 66 29-98 35-103 (207)
130 KOG2799 Succinyl-CoA synthetas 27.8 1E+02 0.0022 30.4 4.7 63 100-170 31-102 (434)
131 PRK02102 ornithine carbamoyltr 26.8 2.3E+02 0.0049 27.4 7.1 70 9-85 46-128 (331)
132 PRK04284 ornithine carbamoyltr 26.6 2.6E+02 0.0056 27.0 7.4 71 8-85 44-127 (332)
133 PRK14805 ornithine carbamoyltr 25.8 2.7E+02 0.0058 26.5 7.3 70 9-85 38-120 (302)
134 PRK01713 ornithine carbamoyltr 25.6 2.8E+02 0.0061 26.8 7.5 71 8-85 45-128 (334)
135 KOG2983 Uncharacterized conser 25.3 3.6E+02 0.0078 25.5 7.6 32 268-301 224-255 (334)
136 PF00764 Arginosuc_synth: Argi 25.0 92 0.002 30.9 4.0 88 25-121 38-165 (388)
137 PRK00779 ornithine carbamoyltr 24.7 2.9E+02 0.0063 26.2 7.3 71 8-85 42-125 (304)
138 PF08886 GshA: Glutamate-cyste 23.2 1.9E+02 0.0041 28.7 5.7 49 272-323 25-75 (404)
139 TIGR00658 orni_carb_tr ornithi 22.7 3.7E+02 0.0081 25.5 7.6 71 8-85 38-121 (304)
140 TIGR00670 asp_carb_tr aspartat 22.5 3.8E+02 0.0082 25.4 7.6 81 9-96 39-138 (301)
141 COG0078 ArgF Ornithine carbamo 22.3 4.1E+02 0.0088 25.5 7.6 73 8-87 43-128 (310)
142 PRK03094 hypothetical protein; 21.4 1.8E+02 0.0038 22.2 4.0 34 28-64 12-45 (80)
143 PRK00856 pyrB aspartate carbam 21.0 4.2E+02 0.0092 25.2 7.6 73 8-87 44-130 (305)
144 cd06353 PBP1_BmpA_Med_like Per 20.9 2.8E+02 0.006 25.3 6.2 36 11-46 1-40 (258)
No 1
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=100.00 E-value=5.2e-81 Score=585.37 Aligned_cols=305 Identities=49% Similarity=0.855 Sum_probs=242.6
Q ss_pred CCccccCCceEEEEEeCCccccccchhHHHHHHHhCCCeEEEeCCCCCccccCCccEEEEccCchhHHHHHHHHHHhCCC
Q 037279 1 MSTQSQCQRFRIGYALAPKKGQSLIQPSLLTKASERGIDLIPIDPIKPLVEQGPFDCIVHKLYGPDWTRQLQQFSSQNPN 80 (327)
Q Consensus 1 ~~~~~~~~~~~vG~~~~~~k~~~~~~~~l~~~~~~~gi~~~~ld~~~~l~~q~~~Dvilhk~~~~~~~~~l~~~~~~~p~ 80 (327)
|++. +++++|||||++||+++|.|++|+..|+++|+++++||+++|+++|||||+||||+++..|.+.+++|.++||+
T Consensus 1 ~~~~--~~~~~VGy~l~~kK~~~~~~~~~~~~~~~~gi~~v~id~~~pl~~QgpfDvIlHKltd~~~~~~l~~y~~~hP~ 78 (307)
T PF05770_consen 1 MQTQ--RKRFRVGYALSPKKQKSFIQPSFIDLARSRGIDFVPIDLSKPLEEQGPFDVILHKLTDEDWVQQLEEYIKKHPE 78 (307)
T ss_dssp HGGG--GTT-EEEEE--HHHHHHHCCCHHCCCCCCCTTEEEEEECCSSSGCC--SCEEEE--CHCHHHHHHHHHHHH-TT
T ss_pred Cccc--ccceEEEEEECHHHHHHhhHHHHHHHHHhcCCEEEEcCCCCCcccCCCcEEEEEeCCCHHHHHHHHHHHHHCCC
Confidence 4544 45999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcC-ccchhHHH-hccCCCcEEEeeccCCCCccceeeE
Q 037279 81 VPIIDSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSE-MKSLTSIE-DLKLTFPVIAKPLVADGSVKSHQMY 158 (327)
Q Consensus 81 v~Vid~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~-~~~~~~~~-~~~l~~P~VvKP~~~~Gs~~sh~m~ 158 (327)
++||||+++|+.++||..|+++|.+++.......|.+|+++++.+ .+++.+.+ +++++||+||||++||||+.||.|+
T Consensus 79 v~viDp~~~i~~l~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Ma 158 (307)
T PF05770_consen 79 VVVIDPPDAIRPLLDRQSMLQVLSELELSEGDGRIRVPKFVVINSDAESLPELLKEAGLKFPLICKPLVACGSADSHKMA 158 (307)
T ss_dssp SEEET-HHHHHHHCCHHCCHHHHHHHHHHHTCTTEE-S-EEEESSSHCCHHHHHHCTTS-SSEEEEESB-SSTSCCCEEE
T ss_pred eEEEcCHHHHHHHHCHHHHHHHHHHhhccccCCcccCCceEEEcCCHHHHHHHHHHCCCcccEEeeehhhcCCccceEEE
Confidence 999999999999999999999999887766778999999999984 45555545 8999999999999999999999999
Q ss_pred EEeChhhhccCCCceEEEeccCCCCeEEEEEEECCEEEEEEeccCCCchhhhhhhcCCccccccccccccCCcccccCCC
Q 037279 159 LIFDSQGLESMTAPFVLQEFVNHGGFIFKVYVAGMNVKCVKRKSLPDISEEKLKSLKGFLPFSRISNLIDNDKKVHDDGK 238 (327)
Q Consensus 159 lv~~~~~l~~l~~p~vvQefI~h~g~d~KV~ViG~~v~~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~ 238 (327)
+|+++++|.++++||++||||||+|++|||||||++++++.|+|+||+..++.....+.|.|+++|+.++.+.. +.
T Consensus 159 ivf~~~gL~~L~~P~VlQeFVNHggvLfKVyVvGd~v~~v~R~SLpn~~~~~~~~~~~~f~~~~vs~~~~~~~~-~~--- 234 (307)
T PF05770_consen 159 IVFNEEGLKDLKPPCVLQEFVNHGGVLFKVYVVGDKVFVVKRPSLPNVSSGKLDREEIFFDFHQVSKLESSSDL-SD--- 234 (307)
T ss_dssp EE-SGGGGTT--SSEEEEE----TTEEEEEEEETTEEEEEEEE------SSS-TCGGCCCEGGGTCSTTTSSGG-GS---
T ss_pred EEECHHHHhhcCCCEEEEEeecCCCEEEEEEEecCEEEEEECCCCCCCCcccccccccceeccccCCccccCch-hh---
Confidence 99999999999999999999999999999999999999999999999987766666788999999998876511 11
Q ss_pred CCCCCCccccccCCCCcHHHHHHHHHHHHHHhCCcEeEEEEEEeCCCCCcEEEEEEcCCCCCCCCCChHHHHHHHHHH
Q 037279 239 KNSQGDEVDLESVEMPSQSFLCELARGMREALGLNLFNFDVMRDARDSNRYLIIDVNYFPGYAKMPGYESIMTDFFLQ 316 (327)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~l~~lA~~~~~~lGl~l~G~Dvi~~~~~g~~~~VidVN~fPg~~g~~~~~~~l~~~~~~ 316 (327)
.. ..+...++|+.+.++++|..+|++|||+|||||+|++++|+++|+||||||||||+|+|+|++.|.++|++
T Consensus 235 ---~d--~~~~~~~~p~~~~v~~la~~LR~~lgL~LFgfDvI~~~~t~~~~~VIDINyFPgY~~vp~f~~~l~~~~~~ 307 (307)
T PF05770_consen 235 ---LD--KDPSQVEMPPDELVEKLAKELRRALGLTLFGFDVIRENGTGGRYYVIDINYFPGYKKVPDFESVLTDFILD 307 (307)
T ss_dssp ---BS--S-TTTTTS--HHHHHHHHHHHHHHHT-SEEEEEEEEGCCT-SSEEEEEEEES--TTTSCTHHHHHHHHHH-
T ss_pred ---cc--cCcccccCCCHHHHHHHHHHHHHHhCcceeeeEEEEEcCCCCcEEEEEeccCCCccCCCChHHHHHHHhhC
Confidence 00 01233456778899999999999999999999999999984469999999999999999999999999874
No 2
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=100.00 E-value=2.4e-77 Score=567.38 Aligned_cols=314 Identities=54% Similarity=0.938 Sum_probs=279.9
Q ss_pred CCccccCCceEEEEEeCCccccccchhHHHHHHHhCCCeEEEeCCCCCccccCCccEEEEccCchhHHHHHHHHHHhCCC
Q 037279 1 MSTQSQCQRFRIGYALAPKKGQSLIQPSLLTKASERGIDLIPIDPIKPLVEQGPFDCIVHKLYGPDWTRQLQQFSSQNPN 80 (327)
Q Consensus 1 ~~~~~~~~~~~vG~~~~~~k~~~~~~~~l~~~~~~~gi~~~~ld~~~~l~~q~~~Dvilhk~~~~~~~~~l~~~~~~~p~ 80 (327)
||..+.+++++|||||++||.++|.|+.|+++|+++|+++++||+++++.+|+|||++|||++++.|.+.+++|..+|||
T Consensus 13 ~~~~~~~~~~~vGy~l~~kk~~~~~~~~l~~~~~~~Gi~~v~Id~~~pl~~qgpfDvilhK~~~~~~~~~~~~~~~e~pg 92 (328)
T PLN02941 13 LSSSSQQKRFVVGYALTPKKVKSFLQPSLEALARSKGIDLVAIDPSRPLSEQGPFDVILHKLYGKEWRQQLEEYREKHPD 92 (328)
T ss_pred ccccccCCceEEEEEECHHHHHHHhhHHHHHHHHHCCCeEEEecCCCCccccCCcCEEEEecCCHHHHHHHHHHHHHCCC
Confidence 45666788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchh-HHH-hccCCCcEEEeeccCCCCccceeeE
Q 037279 81 VPIIDSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLT-SIE-DLKLTFPVIAKPLVADGSVKSHQMY 158 (327)
Q Consensus 81 v~Vid~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~-~~~-~~~l~~P~VvKP~~~~Gs~~sh~m~ 158 (327)
++||||+++|++|+||+.|+++|.++..+.+..+|++|+|+++++.+... ... .++++||+||||++||||+|||+|+
T Consensus 93 v~vidp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~t~v~~~~~~al~~~~~~~~l~~P~V~KPl~g~Gss~gh~m~ 172 (328)
T PLN02941 93 VTVLDPPDAIQRLHNRQSMLQVVADLKLSDGYGSVGVPKQLVVYDDESSIPDAVALAGLKFPLVAKPLVADGSAKSHKMS 172 (328)
T ss_pred cEEECCHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCCCEEEEcCHHHHHHHHHHHhcCCCCEEEeecccCCCccccceE
Confidence 99999999999999999999999997766666779999999999976533 212 6899999999999999999999999
Q ss_pred EEeChhhhccCCCceEEEeccCCCCeEEEEEEECCEEEEEEeccCCCchhhhhhhcCCccccccccccccCCcccccCCC
Q 037279 159 LIFDSQGLESMTAPFVLQEFVNHGGFIFKVYVAGMNVKCVKRKSLPDISEEKLKSLKGFLPFSRISNLIDNDKKVHDDGK 238 (327)
Q Consensus 159 lv~~~~~l~~l~~p~vvQefI~h~g~d~KV~ViG~~v~~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~ 238 (327)
+++++++|..+++|+|+||||||+|+|||||||||++.+++|+|+|||..++..+..|.+.|+++||+++++ ..
T Consensus 173 lv~~~~~L~~l~~p~~lQEfVnh~g~d~RVfVvGd~v~~~~R~S~~n~~~~~~n~~~G~~~f~~vs~~~~~~---~~--- 246 (328)
T PLN02941 173 LAYDQEGLSKLEPPLVLQEFVNHGGVLFKVYVVGDYVKCVRRFSLPDVSEEELSSAEGVLPFPRVSNAAASA---DD--- 246 (328)
T ss_pred EecCHHHHHhcCCcEEEEEecCCCCEEEEEEEECCEEEEEEecCCccccccccccccccccccccccccccc---cc---
Confidence 999999999999999999999999999999999999988999999999754433445789999999987754 11
Q ss_pred CCCCCCccccccCCCCcHHHHHHHHHHHHHHhCCcEeEEEEEEeCCCCCcEEEEEEcCCCCCCCCCChHHHHHHHHHHHH
Q 037279 239 KNSQGDEVDLESVEMPSQSFLCELARGMREALGLNLFNFDVMRDARDSNRYLIIDVNYFPGYAKMPGYESIMTDFFLQVL 318 (327)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~l~~lA~~~~~~lGl~l~G~Dvi~~~~~g~~~~VidVN~fPg~~g~~~~~~~l~~~~~~~~ 318 (327)
+. +...++...++|+++++++||.+++++||++|||||+|++.++|++|+||||||||||+|+|+|+..|.++|++++
T Consensus 247 ~~--~~~~~~~~~~~p~~~~l~~La~~~r~alGl~l~GvDvI~~~~~~~~~~VidVN~fP~~k~~p~~~~~l~~~~~~~~ 324 (328)
T PLN02941 247 AD--NGGLDPEVAELPPRPFLEDLARELRRRLGLRLFNFDMIREHGTGDRYYVIDINYFPGYAKMPGYETVLTDFLLSLV 324 (328)
T ss_pred cc--ccccccccccCCChHHHHHHHHHHHHHhCCceEEEEEEeecCCCCceEEEEecCCCccccCCchHHHHHHHHHHHH
Confidence 00 0013344556777889999999999999999999999999766667999999999999999999999999999999
Q ss_pred hhcc
Q 037279 319 NKSA 322 (327)
Q Consensus 319 ~~~~ 322 (327)
++++
T Consensus 325 ~~~~ 328 (328)
T PLN02941 325 QKKY 328 (328)
T ss_pred hcCC
Confidence 8874
No 3
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=99.98 E-value=2.6e-30 Score=244.36 Aligned_cols=251 Identities=16% Similarity=0.226 Sum_probs=188.7
Q ss_pred hhHHHHHHHhCCCeEEEeCCCCC---cc-----------ccCCccEEEEccCch--hHHHHHHHHHHhCCCCcccCcHHH
Q 037279 26 QPSLLTKASERGIDLIPIDPIKP---LV-----------EQGPFDCIVHKLYGP--DWTRQLQQFSSQNPNVPIIDSPDS 89 (327)
Q Consensus 26 ~~~l~~~~~~~gi~~~~ld~~~~---l~-----------~q~~~Dvilhk~~~~--~~~~~l~~~~~~~p~v~Vid~~~a 89 (327)
.++++++++++|++++.+|+... +. ...++|+++.++..+ .......+.++ ..|+.++|++.+
T Consensus 15 ~~~~~~a~~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~~~~le-~~g~~v~n~~~a 93 (300)
T PRK10446 15 CKRLREAAIQRGHLVEILDPLSCYMNINPAASSIHYKGRKLPHFDAVIPRIGTAITFYGTAALRQFE-MLGSYPLNESVA 93 (300)
T ss_pred HHHHHHHHHHcCCeEEEEehHHceEecCCCcccEEECCcccCCCCEEEEcCCCchhhHHHHHHHHHH-HCCCceecCHHH
Confidence 45789999999999999998752 11 112689999988653 22222233333 347899999999
Q ss_pred HHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEEEeeccCCCCccceeeEEEeChhhhc--
Q 037279 90 IERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKPLVADGSVKSHQMYLIFDSQGLE-- 167 (327)
Q Consensus 90 i~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~~~~~l~-- 167 (327)
+.+|.||+.+.++|.+ .|||+|+|.++.+.+++.+......+||+|+||..|+ +|.++.++.+.+++.
T Consensus 94 ~~~~~dK~~~~~~l~~-------~gip~P~t~~~~~~~~~~~~~~~~~~~P~VvKP~~g~---~g~GV~~v~~~~~~~~~ 163 (300)
T PRK10446 94 IARARDKLRSMQLLAR-------QGIDLPVTGIAHSPDDTSDLIDMVGGAPLVVKLVEGT---QGIGVVLAETRQAAESV 163 (300)
T ss_pred HHhhhcHHHHHHHHHH-------cCCCCCCEEEeCCHHHHHHHHHHhCCCCEEEEECCCC---CcccEEEEcCHHHHHHH
Confidence 9999999999999998 6999999999887665544333223799999999973 578999999987764
Q ss_pred -----cCCCceEEEeccCC-CCeEEEEEEECCEEEEEE-eccCC-CchhhhhhhcCCccccccccccccCCcccccCCCC
Q 037279 168 -----SMTAPFVLQEFVNH-GGFIFKVYVAGMNVKCVK-RKSLP-DISEEKLKSLKGFLPFSRISNLIDNDKKVHDDGKK 239 (327)
Q Consensus 168 -----~l~~p~vvQefI~h-~g~d~KV~ViG~~v~~~~-R~S~~-~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~ 239 (327)
....++++||||++ .|+|+||+|+|++++++. |.+.. +|. +|+..+
T Consensus 164 ~~~~~~~~~~~lvQe~I~~~~g~d~rv~vig~~~~~~~~r~~~~~~~~----------------~n~~~g---------- 217 (300)
T PRK10446 164 IDAFRGLNAHILVQEYIKEAQGCDIRCLVVGDEVVAAIERRAKEGDFR----------------SNLHRG---------- 217 (300)
T ss_pred HHHHHhcCCCEEEEeeeccCCCceEEEEEECCEEEEEEEEecCCCchh----------------heeccC----------
Confidence 34568999999987 499999999999987654 43321 221 133211
Q ss_pred CCCCCccccccCCCCcHHHHHHHHHHHHHHhCCcEeEEEEEEeCCCCCcEEEEEEcCCCCCCCCC-----ChHHHHHHHH
Q 037279 240 NSQGDEVDLESVEMPSQSFLCELARGMREALGLNLFNFDVMRDARDSNRYLIIDVNYFPGYAKMP-----GYESIMTDFF 314 (327)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~l~~lA~~~~~~lGl~l~G~Dvi~~~~~g~~~~VidVN~fPg~~g~~-----~~~~~l~~~~ 314 (327)
+. ... .+..++++++|.++.++||+.++|||++.+. +| +||+|||..|||+++. ++.+.+.+++
T Consensus 218 ---~~---~~~--~~l~~~~~~~a~~a~~alg~~~~gvD~~~~~-~g--~~vlEvN~~pg~~~~~~~~g~~~~~~~~~~i 286 (300)
T PRK10446 218 ---GA---ASV--ASITPQEREIAIKAARTMALDVAGVDILRAN-RG--PLVMEVNASPGLEGIEKTTGIDIAGKMIRWI 286 (300)
T ss_pred ---Ce---ecc--CCCCHHHHHHHHHHHHHhCCCEEEEEEEEcC-CC--cEEEEEECCCChhhhHHHHCcCHHHHHHHHH
Confidence 10 011 2335678999999999999999999999874 34 6899999999998887 4788999999
Q ss_pred HHHHhhcccC
Q 037279 315 LQVLNKSAVG 324 (327)
Q Consensus 315 ~~~~~~~~~~ 324 (327)
++.+..+|.-
T Consensus 287 ~~~~~~~~~~ 296 (300)
T PRK10446 287 ERHATTEYCL 296 (300)
T ss_pred HHhcccccCC
Confidence 9998877754
No 4
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=3.4e-30 Score=245.00 Aligned_cols=221 Identities=21% Similarity=0.294 Sum_probs=165.5
Q ss_pred CccEEEEccCchhHH-HHHHHHHHhCCCCcccCcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHH
Q 037279 54 PFDCIVHKLYGPDWT-RQLQQFSSQNPNVPIIDSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSI 132 (327)
Q Consensus 54 ~~Dvilhk~~~~~~~-~~l~~~~~~~p~v~Vid~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~ 132 (327)
.+|+++.|....... -.+.+ ..+.-|++||||++++..|.||+.++++|.. .++|+|+|+++.++++....
T Consensus 78 ~~D~i~~R~~~~~~~~~~~~~-~~E~~G~~viN~p~~i~~~~nK~~~~~~l~~-------~~ipvP~T~i~~~~~~~~~~ 149 (318)
T COG0189 78 ELDVIIMRKDPPFDFATRFLR-LAERKGVPVINDPQSIRRCRNKLYTTQLLAK-------AGIPVPPTLITRDPDEAAEF 149 (318)
T ss_pred cCCEEEEecCCchhhHHHHHH-HHHHcCCeEECCHHHHHhhhhHHHHHHHHHh-------cCCCCCCEEEEcCHHHHHHH
Confidence 689999998765322 11112 2344689999999999999999999999998 69999999999997655554
Q ss_pred HhccCCCcEEEeeccCCCCccceeeEEEeChh-hhccC--------CCceEEEeccCCCCeEEEEEEECCEEEEEE---e
Q 037279 133 EDLKLTFPVIAKPLVADGSVKSHQMYLIFDSQ-GLESM--------TAPFVLQEFVNHGGFIFKVYVAGMNVKCVK---R 200 (327)
Q Consensus 133 ~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~~~~-~l~~l--------~~p~vvQefI~h~g~d~KV~ViG~~v~~~~---R 200 (327)
....++||+|+||+.| | ||+++.++.+.+ .|..+ ..++++||||+..++++|.+++||..++++ |
T Consensus 150 ~~~~~g~pvVlKp~~G--s-~G~gV~~v~~~d~~l~~~~e~~~~~~~~~~ivQeyi~~~~~~~rrivv~~~~~~~~y~~~ 226 (318)
T COG0189 150 VAEHLGFPVVLKPLDG--S-GGRGVFLVEDADPELLSLLETLTQEGRKLIIVQEYIPKAKRDDRRVLVGGGEVVAIYALA 226 (318)
T ss_pred HHHhcCCCEEEeeCCC--C-CccceEEecCCChhHHHHHHHHhccccceEehhhhcCcccCCcEEEEEeCCEEeEEeeec
Confidence 5788999999999997 4 889999999998 76533 136999999999987777777777766543 2
Q ss_pred ccCCCchhhhhhhcCCccccccccccccCCcccccCCCCCCCCCccccccCCCCcHHHHHHHHHHHHHHhCCcEeEEEEE
Q 037279 201 KSLPDISEEKLKSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVEMPSQSFLCELARGMREALGLNLFNFDVM 280 (327)
Q Consensus 201 ~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~~~lGl~l~G~Dvi 280 (327)
+-.. .++|+ +|++.+ . .....+.++++++||.+++++||+.++||||+
T Consensus 227 R~~~---~~~~R-----------~N~a~G--------------g----~~e~~~l~~e~~elA~kaa~~lGl~~~GVDii 274 (318)
T COG0189 227 RIPA---SGDFR-----------SNLARG--------------G----RAEPCELTEEEEELAVKAAPALGLGLVGVDII 274 (318)
T ss_pred cccC---CCCce-----------eecccc--------------c----cccccCCCHHHHHHHHHHHHHhCCeEEEEEEE
Confidence 3111 11222 244322 1 12233446789999999999999999999999
Q ss_pred EeCCCCCcEEEEEEcCCCCCCCC----C--ChHHHHHHHHHHHHhh
Q 037279 281 RDARDSNRYLIIDVNYFPGYAKM----P--GYESIMTDFFLQVLNK 320 (327)
Q Consensus 281 ~~~~~g~~~~VidVN~fPg~~g~----~--~~~~~l~~~~~~~~~~ 320 (327)
++. + ++||+|||..|++++. . +....+.+++++.+++
T Consensus 275 e~~-~--g~~V~EVN~sP~~~~~i~~~~g~~~~~~~~~~ie~~~~~ 317 (318)
T COG0189 275 EDK-D--GLYVTEVNVSPTGKGEIERVTGVNIAGLIIDAIEKFVRA 317 (318)
T ss_pred ecC-C--CcEEEEEeCCCccccchhhhcCCchHHHHHHHHHHHHhc
Confidence 984 3 3899999999988762 3 4567777777776653
No 5
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=99.97 E-value=7.5e-30 Score=237.97 Aligned_cols=245 Identities=20% Similarity=0.272 Sum_probs=185.0
Q ss_pred hhHHHHHHHhCCCeEEEeCCCCCcc-------ccCCccEEEEccCchhHHHHHHHHHHhCCCCcccCcHHHHHHhcCHHH
Q 037279 26 QPSLLTKASERGIDLIPIDPIKPLV-------EQGPFDCIVHKLYGPDWTRQLQQFSSQNPNVPIIDSPDSIERLHNRIS 98 (327)
Q Consensus 26 ~~~l~~~~~~~gi~~~~ld~~~~l~-------~q~~~Dvilhk~~~~~~~~~l~~~~~~~p~v~Vid~~~ai~~~~dR~~ 98 (327)
.+.|+++++++|+++..+|+..... +..++|+++.|.........+.. ..+.-|++++||+++++.+.||..
T Consensus 12 ~~~l~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~r~~~~~~~~~~~~-~le~~g~~~~n~~~~~~~~~dK~~ 90 (280)
T TIGR02144 12 EKMLIEELEKLGLPYRKIYVPALPLPFGERPKELEDVDVAIIRCVSQSRALYSAR-LLEALGVPVINSSHVIEACGDKIF 90 (280)
T ss_pred HHHHHHHHHHcCCceEEEEhhheEEEcCCCccccCCCCEEEEcCcchhhHHHHHH-HHHHCCCcEECcHHHHHHHhhHHH
Confidence 3568899999999999998775311 22368999998644322222223 334458999999999999999999
Q ss_pred HHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEEEeeccCCCCccceeeEEEeChhhhcc----------
Q 037279 99 MLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKPLVADGSVKSHQMYLIFDSQGLES---------- 168 (327)
Q Consensus 99 ~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~~~~~l~~---------- 168 (327)
++++|++ .|||+|+|+.+.+.+++.+. ...++||+|+||..|+ +++++.++.+.+++..
T Consensus 91 ~~~~l~~-------~gip~P~t~~~~~~~~~~~~-~~~~~~P~vvKP~~g~---~g~gv~~v~~~~~l~~~~~~~~~~~~ 159 (280)
T TIGR02144 91 TYLKLAK-------AGVPTPRTYLAFDREAALKL-AEALGYPVVLKPVIGS---WGRLVALIRDKDELESLLEHKEVLGG 159 (280)
T ss_pred HHHHHHH-------CCcCCCCeEeeCCHHHHHHH-HHHcCCCEEEEECcCC---CcCCEEEECCHHHHHHHHHHHHhhcC
Confidence 9999998 69999999999876655443 3568999999999974 4688999999987643
Q ss_pred -CCCceEEEeccCCCCeEEEEEEECCEEEE-EEeccCCCchhhhhhhcCCccccccccccccCCcccccCCCCCCCCCcc
Q 037279 169 -MTAPFVLQEFVNHGGFIFKVYVAGMNVKC-VKRKSLPDISEEKLKSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEV 246 (327)
Q Consensus 169 -l~~p~vvQefI~h~g~d~KV~ViG~~v~~-~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~ 246 (327)
...++++||||++.|++++++|+|+++.+ +.|.+ .+|..+ ...+ +.
T Consensus 160 ~~~~~~ivQefI~~~~~d~~v~vig~~~~~~~~r~~-~~~~~~----------------~~~g-------------~~-- 207 (280)
T TIGR02144 160 SQHKLFYIQEYINKPGRDIRVFVIGDEAIAAIYRYS-NHWRTN----------------TARG-------------GK-- 207 (280)
T ss_pred CcCCeEEEEcccCCCCCceEEEEECCEEEEEEEEcC-Cchhhh----------------hhcC-------------Cc--
Confidence 12579999999988999999999999865 55665 233221 1000 00
Q ss_pred ccccCCCCcHHHHHHHHHHHHHHhCCcEeEEEEEEeCCCCCcEEEEEEcCCCCCCCCC-----ChHHHHHHHHHHHHh
Q 037279 247 DLESVEMPSQSFLCELARGMREALGLNLFNFDVMRDARDSNRYLIIDVNYFPGYAKMP-----GYESIMTDFFLQVLN 319 (327)
Q Consensus 247 ~~~~~~~~~~~~l~~lA~~~~~~lGl~l~G~Dvi~~~~~g~~~~VidVN~fPg~~g~~-----~~~~~l~~~~~~~~~ 319 (327)
..+ .+..++++++|.++.+++|+.++|||++.+.+ | .++|+|||..|||.++. |+.+.+++++.++++
T Consensus 208 -~~~--~~~~~~~~~~a~~~~~~lg~~~~~vD~~~~~~-g-~~~v~EvN~~p~~~~~~~~~g~~~~~~~~~~~~~~~~ 280 (280)
T TIGR02144 208 -AEP--CPLDEEVEELAVKAAEAVGGGVVAIDIFESKE-R-GLLVNEVNHVPEFKNSVRVTGVNVAGEILEYAVSLVK 280 (280)
T ss_pred -eec--cCCCHHHHHHHHHHHHHhCCCeEEEEEEEcCC-C-CEEEEEEeCCcchhhhhHhhCCCHHHHHHHHHHHhhC
Confidence 111 22356789999999999999999999998754 4 38999999999999875 688899998888764
No 6
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=99.96 E-value=5.5e-28 Score=224.13 Aligned_cols=251 Identities=21% Similarity=0.301 Sum_probs=183.1
Q ss_pred EEEEeCCccccccchhHHHHHHHhCCCeEEEeCCCCC---ccc----cCCccEEEEccCchhHHHHHHHHHHhCCCCccc
Q 037279 12 IGYALAPKKGQSLIQPSLLTKASERGIDLIPIDPIKP---LVE----QGPFDCIVHKLYGPDWTRQLQQFSSQNPNVPII 84 (327)
Q Consensus 12 vG~~~~~~k~~~~~~~~l~~~~~~~gi~~~~ld~~~~---l~~----q~~~Dvilhk~~~~~~~~~l~~~~~~~p~v~Vi 84 (327)
||++..+... ..+.|+++++++|+++..+++... +.. ...+|+++.|.........+.+.++. -|++++
T Consensus 2 ~~~~~~~~~~---~~~~l~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~r~~~~~~~~~~~~~l~~-~g~~~~ 77 (277)
T TIGR00768 2 LAILYDRIRL---DEKMLKEAAEELGIDYKVVTPPAIPLTFNEGPRELAELDVVIVRIVSMFRGLAVARYLES-LGVPVI 77 (277)
T ss_pred EEEEEcCCCH---HHHHHHHHHHHcCCceEEEEhHHcEEeccCCCccCCCCCEEEEechhHhhHHHHHHHHHH-CCCeee
Confidence 4555554322 566899999999999999998743 211 23589999998432222234444443 479999
Q ss_pred CcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEEEeeccCCCCccceeeEEEeChh
Q 037279 85 DSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKPLVADGSVKSHQMYLIFDSQ 164 (327)
Q Consensus 85 d~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~~~~ 164 (327)
|+++++..+.||+.++++|.+ .|+++|+|..+.+.+++.+. ...++||+|+||..|+ .|.++.++.+.+
T Consensus 78 ~~~~~~~~~~dK~~~~~~l~~-------~gi~~P~t~~~~~~~~~~~~-~~~~~~p~vvKP~~g~---~g~gv~~i~~~~ 146 (277)
T TIGR00768 78 NSSDAILNAGDKFLTSQLLAK-------AGLPQPRTGLAGSPEEALKL-IEEIGFPVVLKPVFGS---WGRLVSLARDKQ 146 (277)
T ss_pred CCHHHHHHHhhHHHHHHHHHH-------CCCCCCCEEEeCCHHHHHHH-HHhcCCCEEEEECcCC---CCCceEEEcCHH
Confidence 999999999999999999998 69999999999887766553 3567899999999975 358999999998
Q ss_pred hhccC-------C---CceEEEeccCCC-CeEEEEEEECCEEEEEEeccC-CCchhhhhhhcCCccccccccccccCCcc
Q 037279 165 GLESM-------T---APFVLQEFVNHG-GFIFKVYVAGMNVKCVKRKSL-PDISEEKLKSLKGFLPFSRISNLIDNDKK 232 (327)
Q Consensus 165 ~l~~l-------~---~p~vvQefI~h~-g~d~KV~ViG~~v~~~~R~S~-~~~~~~~~~~~~g~~~f~~~s~~~~~~~~ 232 (327)
++..+ . .++++||||++. |++++|+++|++++++.++.. ..|.. +...+
T Consensus 147 ~l~~~~~~~~~~~~~~~~~lvQe~I~~~~~~~~rv~v~~~~~~~~~~r~~~~~~~~----------------n~~~g--- 207 (277)
T TIGR00768 147 AAETLLEHFEQLNGPQNLFYVQEYIKKPGGRDIRVFVVGDEVIAAIYRITSGHWRT----------------NLARG--- 207 (277)
T ss_pred HHHHHHHHHHHhcccCCcEEEEeeecCCCCceEEEEEECCEEEEEEEEcCCCchhh----------------hhhcC---
Confidence 87422 2 379999999987 489999999999987543322 22221 11110
Q ss_pred cccCCCCCCCCCccccccCCCCcHHHHHHHHHHHHHHhCCcEeEEEEEEeCCCCCcEEEEEEcCCCCCCCCC-----ChH
Q 037279 233 VHDDGKKNSQGDEVDLESVEMPSQSFLCELARGMREALGLNLFNFDVMRDARDSNRYLIIDVNYFPGYAKMP-----GYE 307 (327)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~~~lGl~l~G~Dvi~~~~~g~~~~VidVN~fPg~~g~~-----~~~ 307 (327)
+. ..+ .+..++++++|.++.++||+.++|||++.+. +| .++|+|||..|||.++. ++.
T Consensus 208 ----------~~---~~~--~~l~~~~~~~a~~~~~~l~~~~~~vD~~~~~-~g-~~~viEiN~~p~~~~~~~~~g~~l~ 270 (277)
T TIGR00768 208 ----------GK---AEP--CPLTEEIEELAIKAAKALGLDVVGIDLLESE-DR-GLLVNEVNPNPEFKNSVKTTGVNIA 270 (277)
T ss_pred ----------Ce---eee--cCCCHHHHHHHHHHHHHhCCCeEEEEEEEcC-CC-CeEEEEEcCCcchhhhHHHHCCCHH
Confidence 00 011 1234578999999999999999999999986 34 49999999999998775 344
Q ss_pred HHHHHH
Q 037279 308 SIMTDF 313 (327)
Q Consensus 308 ~~l~~~ 313 (327)
..++++
T Consensus 271 ~~~~~~ 276 (277)
T TIGR00768 271 GKLLDY 276 (277)
T ss_pred HHHHhh
Confidence 555443
No 7
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=99.95 E-value=9.1e-28 Score=212.85 Aligned_cols=175 Identities=26% Similarity=0.458 Sum_probs=104.9
Q ss_pred cCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccC-CCcEEEeeccCCCCccceeeEEEeChhhhcc----
Q 037279 94 HNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKL-TFPVIAKPLVADGSVKSHQMYLIFDSQGLES---- 168 (327)
Q Consensus 94 ~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l-~~P~VvKP~~~~Gs~~sh~m~lv~~~~~l~~---- 168 (327)
.||+.++++|.+ +|||+|+|.++.+.+++.+.. ..+ +||+|+||..|+ .++++.++.+.+++..
T Consensus 2 ~dK~~~~~~l~~-------~gipvP~t~~~~~~~~~~~~~-~~~~~~p~ViKp~~g~---~G~gV~~i~~~~~~~~~l~~ 70 (190)
T PF08443_consen 2 EDKLLTLQLLAK-------AGIPVPETRVTNSPEEAKEFI-EELGGFPVVIKPLRGS---SGRGVFLINSPDELESLLDA 70 (190)
T ss_dssp HBHHHHHHHHHH-------TT-----EEEESSHHHHHHHH-HHH--SSEEEE-SB----------EEEESHCHHHHHHH-
T ss_pred CCHHHHHHHHHH-------CCcCCCCEEEECCHHHHHHHH-HHhcCCCEEEeeCCCC---CCCEEEEecCHHHHHHHHHH
Confidence 599999999999 699999999999988776654 223 899999999873 5789999999977754
Q ss_pred ---CCCceEEEeccCCCC-eEEEEEEECCEEEEEEeccCCCchhhhhhhcCCccccccccccccCCcccccCCCCCCCCC
Q 037279 169 ---MTAPFVLQEFVNHGG-FIFKVYVAGMNVKCVKRKSLPDISEEKLKSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGD 244 (327)
Q Consensus 169 ---l~~p~vvQefI~h~g-~d~KV~ViG~~v~~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~ 244 (327)
...++++|+||++.+ +|+||+|||++++++++++.++ ++|+ +|.+.+ |.
T Consensus 71 ~~~~~~~~~~Q~fI~~~~g~d~Rv~Vig~~vv~a~~r~~~~---~d~r-----------~n~~~g-------------~~ 123 (190)
T PF08443_consen 71 FKRLENPILVQEFIPKDGGRDLRVYVIGGKVVGAYRRSSPE---GDFR-----------TNLSRG-------------GK 123 (190)
T ss_dssp ----TTT-EEEE----SS---EEEEEETTEEEEEEE--------------------------------------------
T ss_pred HHhccCcceEeccccCCCCcEEEEEEECCEEEEEEEEecCc---ccch-----------hhhccC-------------ce
Confidence 357999999999985 9999999999999866655332 1232 122111 11
Q ss_pred ccccccCCCCcHHHHHHHHHHHHHHhCCcEeEEEEEEeCCCCCcEEEEEEcCCCCCCCCC-----ChHHHHHHHH
Q 037279 245 EVDLESVEMPSQSFLCELARGMREALGLNLFNFDVMRDARDSNRYLIIDVNYFPGYAKMP-----GYESIMTDFF 314 (327)
Q Consensus 245 ~~~~~~~~~~~~~~l~~lA~~~~~~lGl~l~G~Dvi~~~~~g~~~~VidVN~fPg~~g~~-----~~~~~l~~~~ 314 (327)
..+. ...++++++|.+++++||++++|||++..+ + +|||+|||.+|||++++ +++..+++||
T Consensus 124 ---~~~~--~l~~e~~~~a~~~~~~lgl~~~giDi~~~~--~-~~~v~EvN~~~~~~~~~~~~g~~i~~~i~~yi 190 (190)
T PF08443_consen 124 ---VEPY--DLPEEIKELALKAARALGLDFAGIDILDTN--D-GPYVLEVNPNPGFRGIEEATGIDIAEEIAEYI 190 (190)
T ss_dssp ----EE------HHHHHHHHHHHHHTT-SEEEEEEEEET--T-EEEEEEEETT---TTHHHHH---HHHHHHHH-
T ss_pred ---EEEe--cCCHHHHHHHHHHHHHhCCCEEEEEEEecC--C-CeEEEEecCCchHhHHHHHHCcCHHHHHHhhC
Confidence 1122 234678999999999999999999977654 2 49999999999999986 3556666654
No 8
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=99.93 E-value=3.7e-24 Score=203.74 Aligned_cols=249 Identities=15% Similarity=0.217 Sum_probs=173.9
Q ss_pred EEEEEeCC---ccccccchhHHHHHHHhCCCeEEEeCCCCCcc---------------c---------------cCCccE
Q 037279 11 RIGYALAP---KKGQSLIQPSLLTKASERGIDLIPIDPIKPLV---------------E---------------QGPFDC 57 (327)
Q Consensus 11 ~vG~~~~~---~k~~~~~~~~l~~~~~~~gi~~~~ld~~~~l~---------------~---------------q~~~Dv 57 (327)
+||+.|.+ .|..+..+.+|+.+|.++||++..+++++... + ...+|+
T Consensus 2 ~~~~~~~~~~~~~~~~~st~~L~~aa~~rG~~v~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~ 81 (312)
T TIGR01380 2 KVAFQMDPIESINIGKDTTFALMEEAQKRGHELFFYEPGDLSVVNGEVFARARPVRVGPNKQDWYTLGEKVRLSLGELDA 81 (312)
T ss_pred eEEEEeCCHHHCCCCcChHHHHHHHHHHcCCEEEEEehhheEEECCEEEEEEEEEEeccCCcceeecCcccccccccCCE
Confidence 58888886 34666677889999999999999999874210 0 026799
Q ss_pred EEEccCchh-----HHHHHHHHHHhCCCCcccCcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHH
Q 037279 58 IVHKLYGPD-----WTRQLQQFSSQNPNVPIIDSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSI 132 (327)
Q Consensus 58 ilhk~~~~~-----~~~~l~~~~~~~p~v~Vid~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~ 132 (327)
++.|..... ....+-++++. .|++|+||+++++.+.||..+++++ -++|+|.+..+.+++.+.
T Consensus 82 v~~R~~~~~~~~~~~~~~~l~~le~-~g~~viN~p~~i~~~~dK~~~~~~~-----------~~vP~T~v~~~~~~~~~~ 149 (312)
T TIGR01380 82 VLMRKDPPFDMEYIYATYLLELADP-TGTLVINSPQGLRDANEKLFTLQFP-----------KVIPPTLVTRDKAEIRAF 149 (312)
T ss_pred EEEeCCCCCChhhhHHHHHHHHHHh-CCCeEEeCHHHHHhhhhHHHHhhCc-----------CCCCCEEEeCCHHHHHHH
Confidence 999974321 11223333333 4899999999999999998877643 269999998887776654
Q ss_pred HhccCCCcEEEeeccCCCCccceeeEEEeCh-hhh-------ccC-CCceEEEeccCC-CCeEEEEEEECCEEEE-EE-e
Q 037279 133 EDLKLTFPVIAKPLVADGSVKSHQMYLIFDS-QGL-------ESM-TAPFVLQEFVNH-GGFIFKVYVAGMNVKC-VK-R 200 (327)
Q Consensus 133 ~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~~~-~~l-------~~l-~~p~vvQefI~h-~g~d~KV~ViG~~v~~-~~-R 200 (327)
. ...+ |+|+||+.|+ +++++.++.+. ..+ ..+ ..|+++|+||+. .+.|+||+|+|+++++ +. |
T Consensus 150 ~-~~~g-~vVvKPl~G~---~G~gv~~v~~~~~~~~~~~~~~~~~~~~~~~vQ~yI~~~~~~D~Rv~vv~g~vv~~ai~R 224 (312)
T TIGR01380 150 L-AEHG-DIVLKPLDGM---GGEGIFRLDPGDPNFNSILETMTQRGREPVMAQRYLPEIKEGDKRILLIDGEPIGAAVAR 224 (312)
T ss_pred H-HHcC-CEEEEECCCC---CCceEEEEcCCCccHHHHHHHHHhccCCcEEEEeccccccCCCEEEEEECCeEEEEEEEe
Confidence 4 2334 9999999973 67888888653 222 222 358999999986 3689999999999875 55 5
Q ss_pred ccCC-CchhhhhhhcCCccccccccccccCCcccccCCCCCCCCCccccccCCCCcHHHHHHHHHHHH---HHhCCcEeE
Q 037279 201 KSLP-DISEEKLKSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVEMPSQSFLCELARGMR---EALGLNLFN 276 (327)
Q Consensus 201 ~S~~-~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~---~~lGl~l~G 276 (327)
.+.+ +|.+ |+..+ |. ..+ .+++++..++|.++. +++|+.++|
T Consensus 225 ~~~~gd~r~----------------N~~~G-------------g~---~~~--~~l~~e~~~ia~~~~~~~~~~gl~~ag 270 (312)
T TIGR01380 225 IPAGGEFRG----------------NLAVG-------------GR---GEA--TELSERDREICADVAPELKRRGLLFVG 270 (312)
T ss_pred cCCCCCccc----------------cccCC-------------ce---eec--cCCCHHHHHHHHHHHHHHHhcCCcEEE
Confidence 4433 2322 32211 11 112 233556789999987 677999999
Q ss_pred EEEEEeCCCCCcEEEEEEcCC--CCCCCCC-----ChHHHHHHHHHHH
Q 037279 277 FDVMRDARDSNRYLIIDVNYF--PGYAKMP-----GYESIMTDFFLQV 317 (327)
Q Consensus 277 ~Dvi~~~~~g~~~~VidVN~f--Pg~~g~~-----~~~~~l~~~~~~~ 317 (327)
||++ | ++|+|||.. +||+++. +++..+++++++.
T Consensus 271 VDii-----g--~~v~EvN~~~p~~~~~~~~~~g~~ia~~i~d~l~~~ 311 (312)
T TIGR01380 271 IDVI-----G--GYLTEVNVTSPTGIREIDRQKGVNIAGMLWDAIEKA 311 (312)
T ss_pred EEEe-----C--CEEEEEecCCcchHHHHHhhhCCCHHHHHHHHHHhh
Confidence 9999 2 369999975 5998775 4677777777664
No 9
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=99.93 E-value=1.7e-23 Score=197.68 Aligned_cols=251 Identities=19% Similarity=0.249 Sum_probs=178.3
Q ss_pred EEEEEe-CCcccccc---chhHHHHHHHhCCCeEEEeCCCCCccc---cCCccEEEEccCchh-HHHHHHHHHHhCCCCc
Q 037279 11 RIGYAL-APKKGQSL---IQPSLLTKASERGIDLIPIDPIKPLVE---QGPFDCIVHKLYGPD-WTRQLQQFSSQNPNVP 82 (327)
Q Consensus 11 ~vG~~~-~~~k~~~~---~~~~l~~~~~~~gi~~~~ld~~~~l~~---q~~~Dvilhk~~~~~-~~~~l~~~~~~~p~v~ 82 (327)
+|++++ .++..... ....++++++++|++++.|+.+..+.. ...+|+++..+.+.. ....++.+++. -+++
T Consensus 6 ~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~~~~~~~~~~~~~D~v~~~~~g~~~~~~~~~~~le~-~gi~ 84 (304)
T PRK01372 6 KVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPGEDIAAQLKELGFDRVFNALHGRGGEDGTIQGLLEL-LGIP 84 (304)
T ss_pred EEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecCcchHHHhccCCCCEEEEecCCCCCCccHHHHHHHH-cCCC
Confidence 577666 23334433 335689999999999999998865443 346899998864321 12234555544 4899
Q ss_pred ccCc-HHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEEEeeccCCCCccceeeEEEe
Q 037279 83 IIDS-PDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKPLVADGSVKSHQMYLIF 161 (327)
Q Consensus 83 Vid~-~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~ 161 (327)
++.+ ..++..+.||..+.++|.+ .|||+|+++.+.+.+++... ...++||+|+||..|. +|.++.++.
T Consensus 85 ~~g~~~~~~~~~~dK~~~k~~l~~-------~gIp~p~~~~~~~~~~~~~~-~~~~~~P~ivKP~~g~---~s~Gv~~v~ 153 (304)
T PRK01372 85 YTGSGVLASALAMDKLRTKLVWQA-------AGLPTPPWIVLTREEDLLAA-IDKLGLPLVVKPAREG---SSVGVSKVK 153 (304)
T ss_pred ccCCCHHHHHHHhCHHHHHHHHHH-------CCCCCCCEEEEeCcchHHHH-HhhcCCCEEEeeCCCC---CCCCEEEeC
Confidence 9976 7999999999999999998 69999999999987765443 4678999999999975 457899999
Q ss_pred Chhhhcc-------CCCceEEEeccCCCCeEEEEEEECCEEEEEEeccCCCchhhhhhhcCCccccccccccccCCcccc
Q 037279 162 DSQGLES-------MTAPFVLQEFVNHGGFIFKVYVAGMNVKCVKRKSLPDISEEKLKSLKGFLPFSRISNLIDNDKKVH 234 (327)
Q Consensus 162 ~~~~l~~-------l~~p~vvQefI~h~g~d~KV~ViG~~v~~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~ 234 (327)
+.+++.. ...++++||||+ |+++.|.|+|+++....+...++ +.+.|.+ ++..+. .
T Consensus 154 ~~~el~~~~~~~~~~~~~~lvEe~i~--G~E~~v~vi~~~~~~~~~~~~~~----------~~~~~~~--~~~~g~---~ 216 (304)
T PRK01372 154 EEDELQAALELAFKYDDEVLVEKYIK--GRELTVAVLGGKALPVIEIVPAG----------EFYDYEA--KYLAGG---T 216 (304)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEcccC--CEEEEEEEECCCccceEEEEecC----------CEEeeec--cccCCC---e
Confidence 9988753 246899999996 89999999999876433322111 1112221 221110 0
Q ss_pred cCCCCCCCCCccccccCCCC--cHHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCcEEEEEEcCCCCCCCC
Q 037279 235 DDGKKNSQGDEVDLESVEMP--SQSFLCELARGMREALGLN-LFNFDVMRDARDSNRYLIIDVNYFPGYAKM 303 (327)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~--~~~~l~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~VidVN~fPg~~g~ 303 (327)
. ...+..++ ..+.++++|.++.++||+. +++||++.+.+ | ++||+|||..||+.+-
T Consensus 217 --------~---~~~p~~~~~~~~~~l~~~a~~~~~~lg~~g~~~iD~~~~~~-g-~~~viEvN~~p~~~~~ 275 (304)
T PRK01372 217 --------Q---YICPAGLPAEIEAELQELALKAYRALGCRGWGRVDFMLDED-G-KPYLLEVNTQPGMTSH 275 (304)
T ss_pred --------E---EEeCCCCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEcCC-C-CEEEEEecCCCCCCcc
Confidence 0 00111122 2456889999999999995 77899999863 5 4899999999999764
No 10
>PRK12458 glutathione synthetase; Provisional
Probab=99.92 E-value=1.8e-23 Score=201.01 Aligned_cols=246 Identities=16% Similarity=0.216 Sum_probs=171.4
Q ss_pred cccchhHHHHHHHhCCCeEEEeCCCCCccc--------------------------------------cCCccEEEEccC
Q 037279 22 QSLIQPSLLTKASERGIDLIPIDPIKPLVE--------------------------------------QGPFDCIVHKLY 63 (327)
Q Consensus 22 ~~~~~~~l~~~~~~~gi~~~~ld~~~~l~~--------------------------------------q~~~Dvilhk~~ 63 (327)
.+..+.+|+.+|.+|||++..+++.+.... ...+|+|++|..
T Consensus 9 ~~~st~~l~~~a~~rgh~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~V~~R~~ 88 (338)
T PRK12458 9 ETDTTLRLAHEAVNRGHEVAYTTPGDLTIRDDEALAFCAVTKKGKKYKKPENFLSFLKKAEFKKERLPLAGFDVIFLRAN 88 (338)
T ss_pred CCchHHHHHHHHHHcCCEEEEEecCcEEEECCEEEEEEEEEEecCcccCccchhhHhhccccccccCchhhCCEEEEeCC
Confidence 566777899999999999998887642100 024799999974
Q ss_pred c---hhHHHHHHH------HHHhCCCCcccCcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHh
Q 037279 64 G---PDWTRQLQQ------FSSQNPNVPIIDSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIED 134 (327)
Q Consensus 64 ~---~~~~~~l~~------~~~~~p~v~Vid~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~ 134 (327)
. ..+.+.+.+ ...+..+++++|++++++.+.||+.++.++ + +++|+|++..+.+++.+.+
T Consensus 89 ~~~~~~~~~~l~~~~~~~~~~~e~~g~~viN~p~~i~~~~dK~~~~~l~-~---------~~vP~T~v~~~~~~~~~~~- 157 (338)
T PRK12458 89 PPLDPLARNWADSVGIAFGRLAARDGVLVVNDPDGLRIANNKLYFQSFP-E---------EVRPTTHISRNKEYIREFL- 157 (338)
T ss_pred CCCChHHHHHHHHhchhHHHHHHhCCCeEecCHHHHHhccCHHHHHhhc-c---------CCCCCEEEeCCHHHHHHHH-
Confidence 3 223333332 223446899999999999999999875432 2 5799999998877665543
Q ss_pred ccCCC-cEEEeeccCCCCccceeeEEEeChhh--hccC------CCceEEEeccCCC-CeEEEEEEECCEEE------EE
Q 037279 135 LKLTF-PVIAKPLVADGSVKSHQMYLIFDSQG--LESM------TAPFVLQEFVNHG-GFIFKVYVAGMNVK------CV 198 (327)
Q Consensus 135 ~~l~~-P~VvKP~~~~Gs~~sh~m~lv~~~~~--l~~l------~~p~vvQefI~h~-g~d~KV~ViG~~v~------~~ 198 (327)
...++ |+|+||+.|. +++++.++.+.+. +..+ ..++++||||+.. +.|+||+|+|++++ ++
T Consensus 158 ~~~~~~pvVvKPl~G~---gG~gV~~v~~~~~~~~~~ile~~~~~~~~ivQeyI~~~~~gDiRv~vv~g~~v~~~g~~~a 234 (338)
T PRK12458 158 EESPGDKMILKPLQGS---GGQGVFLIEKSAQSNLNQILEFYSGDGYVIAQEYLPGAEEGDVRILLLNGEPLERDGHYAA 234 (338)
T ss_pred HHcCCCeEEEEECCCC---CccCeEEEecCChhhHHHHHHHHhhCCCEEEEEcccCCCCCCEEEEEECCEEEeeccceeE
Confidence 33444 5999999984 5688988876653 3211 4589999999863 67999999999999 76
Q ss_pred EeccCCCchhhhhhhcCCccccccccccccCCcccccCCCCCCCCCccccccCCCCcHHHHHHHHHHHHHHh---CCcEe
Q 037279 199 KRKSLPDISEEKLKSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVEMPSQSFLCELARGMREAL---GLNLF 275 (327)
Q Consensus 199 ~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~~~l---Gl~l~ 275 (327)
.++.... ++|+ +|...+ |. .. ..++.++.+++|.++..+| ||.++
T Consensus 235 ~~R~~~~---~d~R-----------sN~~~G-------------g~---~~--~~~l~~~~~~ia~~~~~~l~~~GL~~~ 282 (338)
T PRK12458 235 MRRVPAG---GDVR-----------SNVHAG-------------GS---VV--KHTLTKEELELCEAIRPKLVRDGLFFV 282 (338)
T ss_pred EEEecCC---CCee-----------ecccCC-------------Cc---cc--CcCCCHHHHHHHHHHHHHHhhcCCeEE
Confidence 5443211 1221 122211 11 11 2234567899999999988 99999
Q ss_pred EEEEEEeCCCCCcEEEEEEcC-CC-CCCCC-----CChHHHHHHHHHHHHhh
Q 037279 276 NFDVMRDARDSNRYLIIDVNY-FP-GYAKM-----PGYESIMTDFFLQVLNK 320 (327)
Q Consensus 276 G~Dvi~~~~~g~~~~VidVN~-fP-g~~g~-----~~~~~~l~~~~~~~~~~ 320 (327)
|||++. .+|+|||. +| |+.++ -|++..+++++++.++.
T Consensus 283 gVDli~-------~~l~EIN~~sp~g~~~~~~~~g~d~a~~i~~~i~~~~~~ 327 (338)
T PRK12458 283 GLDIVG-------DKLVEVNVFSPGGLTRINKLNKIDFVEDIIEALERKVQR 327 (338)
T ss_pred eEEEEC-------CEEEEEeCCCcchHHHHHHHhCCCHHHHHHHHHHHHHhH
Confidence 999981 15899998 68 55553 36789999999988754
No 11
>PRK05246 glutathione synthetase; Provisional
Probab=99.92 E-value=2.4e-23 Score=198.37 Aligned_cols=253 Identities=16% Similarity=0.251 Sum_probs=177.7
Q ss_pred EEEEEeCC---ccccccchhHHHHHHHhCCCeEEEeCCCCCcc---------------c---------------cCCccE
Q 037279 11 RIGYALAP---KKGQSLIQPSLLTKASERGIDLIPIDPIKPLV---------------E---------------QGPFDC 57 (327)
Q Consensus 11 ~vG~~~~~---~k~~~~~~~~l~~~~~~~gi~~~~ld~~~~l~---------------~---------------q~~~Dv 57 (327)
+||+.+.+ .|..+..+.+|+++|+++|+++...++.+... . ...+|+
T Consensus 3 ~~~~~~~~~~~~~~~~~st~~l~~aa~~~G~~v~~~~~~dl~~~~~~i~~~~~~~~~~~~~~~w~~~~~~~~~~l~~~D~ 82 (316)
T PRK05246 3 KVAFQMDPIESINIKKDSTFAMMLEAQRRGHELFYYEPDDLSLRGGEVVARARPLTVRDDKGDWYELGEEQRLPLADFDV 82 (316)
T ss_pred eEEEEeCCHHHCCCCCChHHHHHHHHHHcCCEEEEEehhhcEEECCEEEEEEEEEEeccCCccceeccccccCccccCCE
Confidence 68888886 35666777889999999999999998774210 0 013799
Q ss_pred EEEccCch-----hHHHHHHHHHHhCCCCcccCcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHH
Q 037279 58 IVHKLYGP-----DWTRQLQQFSSQNPNVPIIDSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSI 132 (327)
Q Consensus 58 ilhk~~~~-----~~~~~l~~~~~~~p~v~Vid~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~ 132 (327)
++.|.... .....+.+.++. .|++++|++++++.+.||+.+++++. ++|+|.+..+.+++.+.
T Consensus 83 v~~R~~~~~~~~~~~~~~~l~~le~-~g~~v~N~p~~l~~~~dK~~~~~l~~-----------~vP~T~~~~~~~~~~~~ 150 (316)
T PRK05246 83 ILMRKDPPFDMEYIYATYLLERAER-PGTLVVNKPQSLRDANEKLFTLWFPE-----------LMPPTLVTRDKAEIRAF 150 (316)
T ss_pred EEEcCCCCCChHHHHHHHHHHHHHh-CCCeEECCHHHHHhCccHHHHHhhhc-----------cCCCEEEeCCHHHHHHH
Confidence 99885332 112233333333 38999999999999999998876432 68999998887776654
Q ss_pred HhccCCCcEEEeeccCCCCccceeeEEEeCh-hhh-------ccC-CCceEEEeccCCC-CeEEEEEEECCEEEE-EE-e
Q 037279 133 EDLKLTFPVIAKPLVADGSVKSHQMYLIFDS-QGL-------ESM-TAPFVLQEFVNHG-GFIFKVYVAGMNVKC-VK-R 200 (327)
Q Consensus 133 ~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~~~-~~l-------~~l-~~p~vvQefI~h~-g~d~KV~ViG~~v~~-~~-R 200 (327)
+ ...+ |+|+||+.|+ +++++.++... ..+ ... ..|+++|+||+.. +.|+||+|+|+++++ +. |
T Consensus 151 ~-~~~~-~vVlKP~~G~---~G~gV~~i~~~~~~~~~~~~~l~~~~~~~~lvQ~~I~~~~~~D~Rv~vv~g~vv~~a~~R 225 (316)
T PRK05246 151 R-AEHG-DIILKPLDGM---GGAGIFRVKADDPNLGSILETLTEHGREPVMAQRYLPEIKEGDKRILLVDGEPVGYALAR 225 (316)
T ss_pred H-HHCC-CEEEEECCCC---CccceEEEeCCCccHHHHHHHHHHccCCeEEEEeccccCCCCCEEEEEECCEEhhheeEe
Confidence 4 2233 9999999974 56888888542 222 222 4699999999875 679999999999986 55 5
Q ss_pred ccCCCchhhhhhhcCCccccccccccccCCcccccCCCCCCCCCccccccCCCCcHHHHHHHHHHHH---HHhCCcEeEE
Q 037279 201 KSLPDISEEKLKSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVEMPSQSFLCELARGMR---EALGLNLFNF 277 (327)
Q Consensus 201 ~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~---~~lGl~l~G~ 277 (327)
.+..+ +|. +|++.+ |. ..+ .+.+++..++|.++. +.+|+.++||
T Consensus 226 ~~~~~----~~r-----------tN~~~G-------------g~---~~~--~~l~~~~~~ia~~~~~~l~~~gl~~~GV 272 (316)
T PRK05246 226 IPAGG----ETR-----------GNLAAG-------------GR---GEA--TPLTERDREICAAIGPELKERGLIFVGI 272 (316)
T ss_pred cCCCC----Ccc-----------cCccCC-------------ce---Eec--cCCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 44321 121 233221 11 112 233456789998888 5779999999
Q ss_pred EEEEeCCCCCcEEEEEEcCC-C-CCCCCC-----ChHHHHHHHHHHHHhh
Q 037279 278 DVMRDARDSNRYLIIDVNYF-P-GYAKMP-----GYESIMTDFFLQVLNK 320 (327)
Q Consensus 278 Dvi~~~~~g~~~~VidVN~f-P-g~~g~~-----~~~~~l~~~~~~~~~~ 320 (327)
|++ |. +|+|||.+ | ||++++ |++..+++++++.+.+
T Consensus 273 Dli-----~~--~l~EvN~~~p~~~~~~~~~tg~~ia~~i~~~~~~~~~~ 315 (316)
T PRK05246 273 DVI-----GD--YLTEINVTSPTGIREIERLTGVDIAGMLWDAIEAKLAA 315 (316)
T ss_pred EEe-----CC--EEEEEeCCCchHHHHHHHHhCCCHHHHHHHHHHHHhhc
Confidence 999 22 59999976 6 898886 5778888988887654
No 12
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.91 E-value=2e-22 Score=204.85 Aligned_cols=251 Identities=18% Similarity=0.292 Sum_probs=164.9
Q ss_pred hHHHHHHHhCCCeEEEeCCCCCccccC-CccEEEEccCchhHHHHHHHHHHhCCCCcccCcHHHHHHhcCHHHHHHHHHh
Q 037279 27 PSLLTKASERGIDLIPIDPIKPLVEQG-PFDCIVHKLYGPDWTRQLQQFSSQNPNVPIIDSPDSIERLHNRISMLEVVTQ 105 (327)
Q Consensus 27 ~~l~~~~~~~gi~~~~ld~~~~l~~q~-~~Dvilhk~~~~~~~~~l~~~~~~~p~v~Vid~~~ai~~~~dR~~~~~~L~~ 105 (327)
+.++++|+++|++++.+|.+..+-.-+ .-+.++.+ + ....++++.++.+|.||..|.++|.+
T Consensus 245 ~~Ii~~a~~~Gi~~~~~~se~~~~~L~~g~~~~~~~---------------~--s~~~~~s~~ai~~~~DK~~tk~lL~~ 307 (547)
T TIGR03103 245 RIIVDEARRRGIEVEVLDAEGGLFRLSLGGRSIRCR---------------E--SLSELTSAVAMSLCDDKRLTRRLVSE 307 (547)
T ss_pred HHHHHHHHHcCCcEEEECCCCCEEEecCCceEEEEE---------------e--ccCCCCCHHHHHHhcCHHHHHHHHHH
Confidence 679999999999999988554322110 11222211 1 23367899999999999999999998
Q ss_pred cccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEEEeeccCCCCccceeeEE-EeChhhhcc-------CCCceEEEe
Q 037279 106 LKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKPLVADGSVKSHQMYL-IFDSQGLES-------MTAPFVLQE 177 (327)
Q Consensus 106 ~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~VvKP~~~~Gs~~sh~m~l-v~~~~~l~~-------l~~p~vvQe 177 (327)
.|||+|++.++.+.+++.+.. ..++ |+|+||..|+ +|.+|.+ +.++++|.. ....+++|+
T Consensus 308 -------aGIpVP~~~~~~~~~~~~~~~-~~~G-~vVVKP~~G~---~G~Gv~v~v~~~~eL~~a~~~a~~~~~~vlvEe 375 (547)
T TIGR03103 308 -------AGLQVPEQQLAGNGEAVEAFL-AEHG-AVVVKPVRGE---QGKGISVDVRTPDDLEAAIAKARQFCDRVLLER 375 (547)
T ss_pred -------cCcCCCCEEEECCHHHHHHHH-HHhC-CEEEEECCCC---CCcCeEEecCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 699999999998876665433 3456 7999999873 6789987 899988753 245899999
Q ss_pred ccCCCCeEEEEEEECCEEEEEE-eccCCCc-hhh-----hh---h---h---cCCc-----------------ccccccc
Q 037279 178 FVNHGGFIFKVYVAGMNVKCVK-RKSLPDI-SEE-----KL---K---S---LKGF-----------------LPFSRIS 224 (327)
Q Consensus 178 fI~h~g~d~KV~ViG~~v~~~~-R~S~~~~-~~~-----~~---~---~---~~g~-----------------~~f~~~s 224 (327)
|| .|.|+|++|||++++++. |.. +++ ..+ ++ + . ..+. +.++++
T Consensus 376 ~i--~G~d~Rv~Vigg~vvaa~~R~~-~~V~GDG~~ti~~Lie~~n~~~~~~~~~~~~i~~d~~~~~~l~~~g~~~~~V- 451 (547)
T TIGR03103 376 YV--PGEDLRLVVIDFEVVAAAVRRP-PEVIGDGRSSIRDLIEKQSRRRAAATGGESRIPLDAETERCLAEAGLDLDDV- 451 (547)
T ss_pred ec--cCCeEEEEEECCEEEEEEEecC-cEEEeCCccCHHHHHHHHhcCccCCCCCcCccCCCHHHHHHHHHcCCCcccc-
Confidence 99 489999999999999855 543 321 000 00 0 0 0000 111111
Q ss_pred ccccCCcccccCCCCC-CCCCccccccCCCCcHHHHHHHHHHHHHHhCCcEeEEEEEEeCCCCCcEEEEEEcCCCCCCCC
Q 037279 225 NLIDNDKKVHDDGKKN-SQGDEVDLESVEMPSQSFLCELARGMREALGLNLFNFDVMRDARDSNRYLIIDVNYFPGYAKM 303 (327)
Q Consensus 225 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~lA~~~~~~lGl~l~G~Dvi~~~~~g~~~~VidVN~fPg~~g~ 303 (327)
+...+.+..+.++| +.|... ....-...+++.++|.++++++||.++|||+|.++.++..|+|||||..||+.+-
T Consensus 452 --~~~G~~v~l~~~~Nl~tGg~~--~dvtd~~~~~~~~~A~~aa~~~gl~~~GvD~i~~~~~~p~~~iiEvN~~Pgl~~h 527 (547)
T TIGR03103 452 --LPEGQRLRVRRTANLHTGGTI--HDVTEQLHPDLREAAERAARALDIPVVGIDFLVPDVTGPDYVIIEANERPGLANH 527 (547)
T ss_pred --CCCCCEEEEecCCcccCCCee--EecccccCHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCeEEEEecCCcccccc
Confidence 00000000000111 112111 1111123568899999999999999999999997644445899999999999876
Q ss_pred C--ChHHHHHHHH
Q 037279 304 P--GYESIMTDFF 314 (327)
Q Consensus 304 ~--~~~~~l~~~~ 314 (327)
+ +..+.++|++
T Consensus 528 ~~~~~~~~~~d~l 540 (547)
T TIGR03103 528 EPQPTAERFIDLL 540 (547)
T ss_pred CCCchHHHHHHHh
Confidence 4 4666666654
No 13
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=99.90 E-value=5.3e-22 Score=188.20 Aligned_cols=239 Identities=18% Similarity=0.242 Sum_probs=164.1
Q ss_pred chhHHHHHHHhCCCeEEEeCCCCC-------ccc--------cCCccEEEEccCchhH-HHHHHHHHHhCCCCcccCc-H
Q 037279 25 IQPSLLTKASERGIDLIPIDPIKP-------LVE--------QGPFDCIVHKLYGPDW-TRQLQQFSSQNPNVPIIDS-P 87 (327)
Q Consensus 25 ~~~~l~~~~~~~gi~~~~ld~~~~-------l~~--------q~~~Dvilhk~~~~~~-~~~l~~~~~~~p~v~Vid~-~ 87 (327)
....++++++++|++++.++.+.. +.+ ...+|+++.-+..... ...+++.++ ..|++++++ +
T Consensus 19 s~~~i~~al~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~g~~~~~~~~~~~le-~~gip~~g~~~ 97 (315)
T TIGR01205 19 SAAAVLKALRDLGYDVYPVDIDKMGSWTYKDLPQLILELGALLEGIDVVFPVLHGRYGEDGTIQGLLE-LMGIPYTGSGV 97 (315)
T ss_pred HHHHHHHHHhhcCCEEEEEeecCCccccccchHHHHhhccccCCCCCEEEEecCCCCCCCcHHHHHHH-HcCCCccCCCH
Confidence 344578999999999999998862 111 1368999986532210 123344433 458999996 8
Q ss_pred HHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEc-CccchhH----HHhccCCCcEEEeeccCCCCccceeeEEEeC
Q 037279 88 DSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVS-EMKSLTS----IEDLKLTFPVIAKPLVADGSVKSHQMYLIFD 162 (327)
Q Consensus 88 ~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~-~~~~~~~----~~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~~ 162 (327)
.++.+|.||..|.++|.+ .|||+|+++++. +.++..+ .....++||+|+||..++ +|+++.++.|
T Consensus 98 ~~~~~~~dK~~~~~~l~~-------~gip~p~~~~~~~~~~~~~~~~~~~~~~~~~~P~vvKP~~~~---~s~Gv~~v~~ 167 (315)
T TIGR01205 98 LASALSMDKLLTKLLWKA-------LGLPTPDYIVLTQNRASADELECEQVAEPLGFPVIVKPAREG---SSVGVSKVKS 167 (315)
T ss_pred HHHHHHHCHHHHHHHHHH-------CCCCCCCEEEEecccccchhhhHHHHHHhcCCCEEEEeCCCC---CccCEEEECC
Confidence 999999999999999998 699999999987 5443322 113578999999999974 3578999999
Q ss_pred hhhhcc-------CCCceEEEeccCCCCeEEEEEEEC-CEEEE-EEeccCCCchhhhhhhcCCccccccccccccCCccc
Q 037279 163 SQGLES-------MTAPFVLQEFVNHGGFIFKVYVAG-MNVKC-VKRKSLPDISEEKLKSLKGFLPFSRISNLIDNDKKV 233 (327)
Q Consensus 163 ~~~l~~-------l~~p~vvQefI~h~g~d~KV~ViG-~~v~~-~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~ 233 (327)
.++|.. ...++++||||+ |+++.|.|+| ++... +.+..... .++.|.. ++....
T Consensus 168 ~~el~~~~~~~~~~~~~~lvEe~i~--G~e~~v~vi~~~~~~~~~~~~~~~~----------~~~~~~~--~~~~~~--- 230 (315)
T TIGR01205 168 EEELQAALDEAFEYDEEVLVEQFIK--GRELEVSILGNEEALPIIEIVPEIE----------GFYDYEA--KYLDGS--- 230 (315)
T ss_pred HHHHHHHHHHHHhcCCcEEEEcCCC--CEEEEEEEECCCCccceEEecCCCC----------CeeCccc--ccCCCC---
Confidence 988753 356899999994 8999999999 54322 22111000 0111211 211110
Q ss_pred ccCCCCCCCCCccccccCCCC--cHHHHHHHHHHHHHHhCC-cEeEEEEEEeCCCCCcEEEEEEcCCCCCCCCC
Q 037279 234 HDDGKKNSQGDEVDLESVEMP--SQSFLCELARGMREALGL-NLFNFDVMRDARDSNRYLIIDVNYFPGYAKMP 304 (327)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~--~~~~l~~lA~~~~~~lGl-~l~G~Dvi~~~~~g~~~~VidVN~fPg~~g~~ 304 (327)
. . ...+...+ ..++++++|.++.++||+ ++++||++++.+ | +++|+|||..||+....
T Consensus 231 ~--------~---~~~p~~l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~~~~-g-~~~viEvN~~pg~~~~s 291 (315)
T TIGR01205 231 T--------E---YVIPAPLDEELEEKIKELALKAYKALGCRGLARVDFFLDEE-G-EIYLNEINTIPGMTAIS 291 (315)
T ss_pred e--------e---EEeCCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeCC-C-CEEEEEeeCCCCCCCcc
Confidence 0 0 00111122 245789999999999999 599999999853 4 48999999999998744
No 14
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=99.88 E-value=9.9e-21 Score=178.83 Aligned_cols=230 Identities=14% Similarity=0.210 Sum_probs=159.9
Q ss_pred HHHHHHhCCCeEEEeCCCCCcc----ccCCccEEEEccCchh-HHHHHHHHHHhCCCCcccCc-HHHHHHhcCHHHHHHH
Q 037279 29 LLTKASERGIDLIPIDPIKPLV----EQGPFDCIVHKLYGPD-WTRQLQQFSSQNPNVPIIDS-PDSIERLHNRISMLEV 102 (327)
Q Consensus 29 l~~~~~~~gi~~~~ld~~~~l~----~q~~~Dvilhk~~~~~-~~~~l~~~~~~~p~v~Vid~-~~ai~~~~dR~~~~~~ 102 (327)
+.+++++.|++++.++....+. ....+|+++..+.... -...++.++.. -|++++.+ +.++.+|+||..|.++
T Consensus 24 i~~al~~~g~~~~~i~~~~~~~~~~~~~~~~D~v~~~~~g~~ge~~~~~~~le~-~gip~~G~~~~a~~i~~DK~~~k~~ 102 (299)
T PRK14571 24 VKKALEKLGYEVTVFDVDEDFLKKVDQLKSFDVVFNVLHGTFGEDGTLQAILDF-LGIRYTGSDAFSSMICFDKLLTYRF 102 (299)
T ss_pred HHHHHHHcCCeEEEEccCchHHHHhhhccCCCEEEEeCCCCCCCccHHHHHHHH-cCCCccCCCHHHHHHHcCHHHHHHH
Confidence 7788899999999999775422 2246899999886531 12345565544 48999965 9999999999999988
Q ss_pred HHhcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEEEeeccCCCCccceeeEEEeChhhhccC-------CCceEE
Q 037279 103 VTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKPLVADGSVKSHQMYLIFDSQGLESM-------TAPFVL 175 (327)
Q Consensus 103 L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~~~~~l~~l-------~~p~vv 175 (327)
|+. +||+|++..+.+.. ....++||+|+||..|+| |.++.++++.++|... ..++++
T Consensus 103 l~~--------~ip~p~~~~~~~~~-----~~~~l~~P~vvKP~~g~~---s~Gv~~v~~~~el~~~~~~~~~~~~~vlV 166 (299)
T PRK14571 103 LKG--------TVEIPDFVEIKEFM-----KTSPLGYPCVVKPRREGS---SIGVFICESDEEFQHALKEDLPRYGSVIV 166 (299)
T ss_pred Hhc--------CCCCCCEEEEechh-----hhhhcCCCEEEecCCCCC---cCCEEEECCHHHHHHHHHHHHhhCCcEEE
Confidence 874 69999999886421 134689999999999753 5789999999887532 347999
Q ss_pred EeccCCCCeEEEEEEECCE----EEEEEeccCCCchhhhhhhcCCccccccccccccCCcccccCCCCCCCCCccccccC
Q 037279 176 QEFVNHGGFIFKVYVAGMN----VKCVKRKSLPDISEEKLKSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESV 251 (327)
Q Consensus 176 QefI~h~g~d~KV~ViG~~----v~~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (327)
||||+ |+++.|.|+|+. +......... .+++.|.. ++..+. . ....+.
T Consensus 167 EeyI~--G~E~sv~vl~~~~~~~vl~~~e~~~~----------~~~~~~~~--k~~~g~---~-----------~~~~p~ 218 (299)
T PRK14571 167 QEYIP--GREMTVSILETEKGFEVLPILELRPK----------RRFYDYVA--KYTKGE---T-----------EFILPA 218 (299)
T ss_pred Ecccc--ceEEEEEEEcCCCCeeeeceEEEecC----------CCcccccc--ccCCCC---e-----------eEEeCC
Confidence 99995 899999999863 2222211110 01122211 221100 0 000111
Q ss_pred CCC--cHHHHHHHHHHHHHHhCC-cEeEEEEEEeCCCCCcEEEEEEcCCCCCCCCCCh
Q 037279 252 EMP--SQSFLCELARGMREALGL-NLFNFDVMRDARDSNRYLIIDVNYFPGYAKMPGY 306 (327)
Q Consensus 252 ~~~--~~~~l~~lA~~~~~~lGl-~l~G~Dvi~~~~~g~~~~VidVN~fPg~~g~~~~ 306 (327)
..+ ..+.++++|.++.++||+ ++++||++.++ | ++||+|||..||+.....+
T Consensus 219 ~l~~~~~~~i~~~a~~~~~~lg~~g~~rvD~~~~~--~-~~~viEiN~~Pg~~~~s~~ 273 (299)
T PRK14571 219 PLNPEEERLVKETALKAFVEAGCRGFGRVDGIFSD--G-RFYFLEINTVPGLTELSDL 273 (299)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEC--C-cEEEEEeeCCCCCCccCHH
Confidence 222 245688999999999997 68899999863 3 4899999999999876543
No 15
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=99.88 E-value=6.2e-21 Score=199.58 Aligned_cols=259 Identities=17% Similarity=0.246 Sum_probs=166.8
Q ss_pred ccchhHHHHHHHhCCCeEEEeCCCCCccccC---CccEEEEccCchhHHHHHHHHHHhCCCCcccCcHHHHHHhcCHHHH
Q 037279 23 SLIQPSLLTKASERGIDLIPIDPIKPLVEQG---PFDCIVHKLYGPDWTRQLQQFSSQNPNVPIIDSPDSIERLHNRISM 99 (327)
Q Consensus 23 ~~~~~~l~~~~~~~gi~~~~ld~~~~l~~q~---~~Dvilhk~~~~~~~~~l~~~~~~~p~v~Vid~~~ai~~~~dR~~~ 99 (327)
.+.+..|+++|.++||++..+|.+..+...+ ..+.+.. ......|+..+...+.||..|
T Consensus 431 ~~sT~~li~aA~~rGi~v~~ld~~~~~l~l~~g~~~~~v~~------------------~~~t~~~s~~s~~~~~DK~~t 492 (752)
T PRK02471 431 ELSTQILLFDAIQRGIQVEILDEQDQFLKLQKGDHVEYVKN------------------GNMTSKDNYISPLIMENKVVT 492 (752)
T ss_pred ChhHHHHHHHHHHCCCeEEEEcCCcceehhccCCCeeEEEe------------------ccccCCCHHHHHHHhhCHHHH
Confidence 4567789999999999999999875533221 1222211 135678899999999999999
Q ss_pred HHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEEEeeccCCCCccceeeEEEeC---hhhhc-------cC
Q 037279 100 LEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKPLVADGSVKSHQMYLIFD---SQGLE-------SM 169 (327)
Q Consensus 100 ~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~~---~~~l~-------~l 169 (327)
.++|.+ +|||+|++.++.+.+++.+....-.+||+|+||..|+ +|.|+.++.+ .+++. ..
T Consensus 493 k~lL~~-------~GIpvP~~~~~~~~e~a~~~~~~~~g~PvVVKP~~g~---~G~GV~~~~~~~~~eel~~A~~~a~~~ 562 (752)
T PRK02471 493 KKILAE-------AGFPVPAGDEFTSLEEALADYSLFADKAIVVKPKSTN---FGLGISIFKEPASLEDYEKALEIAFRE 562 (752)
T ss_pred HHHHHH-------CCcCCCCEEEEcCHHHHHHHHHHhcCCCEEEEECCCC---CcCCeEEecCcCCHHHHHHHHHHHHhc
Confidence 999998 7999999999988666554433335899999999974 5688888654 44443 22
Q ss_pred CCceEEEeccCCCCeEEEEEEECCEEEEEEeccCCCchhhh------hh---hc---CC--c------ccccc-------
Q 037279 170 TAPFVLQEFVNHGGFIFKVYVAGMNVKCVKRKSLPDISEEK------LK---SL---KG--F------LPFSR------- 222 (327)
Q Consensus 170 ~~p~vvQefI~h~g~d~KV~ViG~~v~~~~R~S~~~~~~~~------~~---~~---~g--~------~~f~~------- 222 (327)
...+++|||| .|++|||+|+|++++++.++..+++.-++ +. .. .| . +.++.
T Consensus 563 ~~~vlVEEfI--~G~E~Rv~Viggkvvaa~~R~pa~V~GDG~~tI~eLi~~~n~~p~Rg~~~~~~l~~I~~d~~~~~~L~ 640 (752)
T PRK02471 563 DSSVLVEEFI--VGTEYRFFVLDGKVEAVLLRVPANVVGDGIHTVRELVAQKNQDPLRGTDHRTPLEKIQLGEIERLMLK 640 (752)
T ss_pred CCcEEEEecc--cCCEEEEEEECCEEEEEEEEeCCccccCcHhhHHHHHHHhcCCccccCcccccccccccCHHHHHHHH
Confidence 4579999999 49999999999999986554444432111 10 00 01 0 01111
Q ss_pred -----ccccccCCcccccCCCCC-C-CCCccccccCCCCcHHHHHHHHHHHHHHhCCcEeEEEEEEeCCC----CC--cE
Q 037279 223 -----ISNLIDNDKKVHDDGKKN-S-QGDEVDLESVEMPSQSFLCELARGMREALGLNLFNFDVMRDARD----SN--RY 289 (327)
Q Consensus 223 -----~s~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~l~~lA~~~~~~lGl~l~G~Dvi~~~~~----g~--~~ 289 (327)
....+...+.+..+.++| + +|...+.. . ...+...++|.++++++|+.++|||++.++-+ +. .+
T Consensus 641 ~qg~~l~sVp~~Ge~v~L~~~~NlstGg~~~dvt--d-~ih~~~~~lA~~aa~~igl~~~GvDii~~di~~p~~~~~~~~ 717 (752)
T PRK02471 641 QQGLTPDSIPKKGEIVYLRENSNISTGGDSIDMT--D-DMDDSYKQIAVKAAKALGAKICGVDLIIPDLTQPASPEHPNY 717 (752)
T ss_pred HcCCCccccCCCCCEEEecCCCccCCCCeeEecc--c-ccCHHHHHHHHHHHHhcCCCEEEEEEEeCCCcccccccCCCe
Confidence 000000000000000112 1 22211111 1 13567899999999999999999999997411 11 47
Q ss_pred EEEEEcCCCCCCCC--------CChHHHHHHHH
Q 037279 290 LIIDVNYFPGYAKM--------PGYESIMTDFF 314 (327)
Q Consensus 290 ~VidVN~fPg~~g~--------~~~~~~l~~~~ 314 (327)
.|||||..||+..- .++.+.+++++
T Consensus 718 ~IiEvN~~P~l~mH~~P~~G~~r~v~~~i~d~l 750 (752)
T PRK02471 718 GIIELNFNPAMYMHCFPYKGKGRRITPKILDKL 750 (752)
T ss_pred EEEEecCCCchhhccCccCCCCcchHHHHHHHh
Confidence 89999999997432 25666666654
No 16
>PRK14016 cyanophycin synthetase; Provisional
Probab=99.88 E-value=6.2e-21 Score=199.72 Aligned_cols=245 Identities=19% Similarity=0.301 Sum_probs=156.7
Q ss_pred hhHHHHHHHhCCCeEEEeCCCCCccccCCccEEEEccCchhHHHHHHHHHHhCCCCcccCcHHHHHHhcCHHHHHHHHHh
Q 037279 26 QPSLLTKASERGIDLIPIDPIKPLVEQGPFDCIVHKLYGPDWTRQLQQFSSQNPNVPIIDSPDSIERLHNRISMLEVVTQ 105 (327)
Q Consensus 26 ~~~l~~~~~~~gi~~~~ld~~~~l~~q~~~Dvilhk~~~~~~~~~l~~~~~~~p~v~Vid~~~ai~~~~dR~~~~~~L~~ 105 (327)
+..++++|.++|+.+..|+-. .+.. . -+.. ...+++.. ...-++..++.++.||..+.++|.+
T Consensus 162 t~~I~~~A~~~gi~~~~l~~~-~~v~--------l-gyG~-~~~~i~~~------~~~~~s~~a~~i~~DK~~tk~lL~~ 224 (727)
T PRK14016 162 TAAIVDAAEARGIPYIRLGDG-SLVQ--------L-GYGK-YQRRIQAA------ETDQTSAIAVDIACDKELTKRLLAA 224 (727)
T ss_pred HHHHHHHHHHcCCCEEEeCCC-CeEe--------c-CCcH-HHHHHHHh------cCCCCcHHHHHHhCCHHHHHHHHHH
Confidence 456888999999998887643 1111 1 0111 11222221 2237789999999999999999998
Q ss_pred cccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEEEeeccCCCCccceeeEE-EeChhhhccC-------CCceEEEe
Q 037279 106 LKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKPLVADGSVKSHQMYL-IFDSQGLESM-------TAPFVLQE 177 (327)
Q Consensus 106 ~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~VvKP~~~~Gs~~sh~m~l-v~~~~~l~~l-------~~p~vvQe 177 (327)
.|||+|++..+.+.+++.+. ...++||+|+||..|+ ++++|.+ +.++++|... ..++++|+
T Consensus 225 -------~GIPvP~~~~v~s~~~a~~~-a~~iG~PvVVKP~~G~---~G~GV~~~v~~~~el~~a~~~a~~~~~~viVEe 293 (727)
T PRK14016 225 -------AGVPVPEGRVVTSAEDAWEA-AEEIGYPVVVKPLDGN---HGRGVTVNITTREEIEAAYAVASKESSDVIVER 293 (727)
T ss_pred -------CCcCCCCeeEeCCHHHHHHH-HHHcCCCEEEEECCCC---CCCceEEecCCHHHHHHHHHHHHHhCCeEEEEE
Confidence 69999999999887766553 4578999999999863 5789998 8999887532 46899999
Q ss_pred ccCCCCeEEEEEEECCEEEEEEeccCCCchhhh------hhh------cCC--c------cccccc------------cc
Q 037279 178 FVNHGGFIFKVYVAGMNVKCVKRKSLPDISEEK------LKS------LKG--F------LPFSRI------------SN 225 (327)
Q Consensus 178 fI~h~g~d~KV~ViG~~v~~~~R~S~~~~~~~~------~~~------~~g--~------~~f~~~------------s~ 225 (327)
||+ |+||||+|+|++++++.|+-.+.+.-+. +.. ..| . +.++.. ..
T Consensus 294 ~I~--G~d~Rv~Vvgg~vvaa~~r~~~~v~GDG~~ti~~Li~~~n~~p~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~~s 371 (727)
T PRK14016 294 YIP--GKDHRLLVVGGKLVAAARREPPHVIGDGKHTIRELIEIVNQDPRRGEGHEKPLTKIKLDDIALLELAKQGYTLDS 371 (727)
T ss_pred ecC--CceEEEEEECCEEEEEEEecCcEEecCCcccHHHHHHHhhcCccccccccCcccccCCCHHHHHHHHHcCCCccc
Confidence 995 8999999999999987766545431100 000 000 0 011100 00
Q ss_pred cccCCcccccCCCCC-CCCCccccccCCCCcHHHHHHHHHHHHHHhCCcEeEEEEEEeCC----CCCcEEEEEEcCCCCC
Q 037279 226 LIDNDKKVHDDGKKN-SQGDEVDLESVEMPSQSFLCELARGMREALGLNLFNFDVMRDAR----DSNRYLIIDVNYFPGY 300 (327)
Q Consensus 226 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~lA~~~~~~lGl~l~G~Dvi~~~~----~g~~~~VidVN~fPg~ 300 (327)
.+...+..-.+.++| +.|.. .....-...+++.++|.++++++|++++|||++.++- .++.+.|||||..||+
T Consensus 372 V~~~G~~v~l~~~~N~s~Gg~--~~d~td~i~~~~~~~a~~aa~~~gl~~~GvDi~~~di~~p~~~~~~~iiEvN~sPgi 449 (727)
T PRK14016 372 VPPKGEKVYLRRNANLSTGGT--AIDVTDEVHPENAAIAERAAKIIGLDIAGVDVVCEDISKPLEEQGGAIVEVNAAPGL 449 (727)
T ss_pred cCCCCCEEEEeccccccCCCe--eEecccccCHHHHHHHHHHHHhcCCCEEEEEEEecCcccccccCCcEEEEEcCCcch
Confidence 000000000000111 11211 1111111356789999999999999999999999641 0123689999999999
Q ss_pred CC
Q 037279 301 AK 302 (327)
Q Consensus 301 ~g 302 (327)
..
T Consensus 450 ~~ 451 (727)
T PRK14016 450 RM 451 (727)
T ss_pred hh
Confidence 75
No 17
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=99.87 E-value=2.3e-20 Score=176.32 Aligned_cols=250 Identities=16% Similarity=0.193 Sum_probs=168.3
Q ss_pred ceEEEEEeCCc-cccccc---hhHHHHHHHhCCCeEEEeCCCC-Cccc---cCCccEEEEccCchhH-HHHHHHHHHhCC
Q 037279 9 RFRIGYALAPK-KGQSLI---QPSLLTKASERGIDLIPIDPIK-PLVE---QGPFDCIVHKLYGPDW-TRQLQQFSSQNP 79 (327)
Q Consensus 9 ~~~vG~~~~~~-k~~~~~---~~~l~~~~~~~gi~~~~ld~~~-~l~~---q~~~Dvilhk~~~~~~-~~~l~~~~~~~p 79 (327)
+.+|++++=-. -+.... ...+.++.++.|++++.+|.+. .+.. ..++|+++.=+..... ...++..++. -
T Consensus 3 ~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~~~~~~~~~l~~~~~d~vf~~lhG~~ge~~~i~~~le~-~ 81 (296)
T PRK14569 3 NEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDASGKELVAKLLELKPDKCFVALHGEDGENGRVSALLEM-L 81 (296)
T ss_pred CcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEcCCchhHHHHhhccCCCEEEEeCCCCCCCChHHHHHHHH-c
Confidence 44677765432 222222 2236778899999999999863 2111 2367888876543211 2345555544 4
Q ss_pred CCcccC-cHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEEEeeccCCCCccceeeE
Q 037279 80 NVPIID-SPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKPLVADGSVKSHQMY 158 (327)
Q Consensus 80 ~v~Vid-~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~VvKP~~~~Gs~~sh~m~ 158 (327)
|++++. ++.++.+|+||+.+-++|.+ .|||||++..+.+... ....++||+|+||..|++ |.++.
T Consensus 82 gip~~Gs~~~a~~l~~DK~~~k~~l~~-------~gIptp~~~~~~~~~~----~~~~~~~P~vVKP~~ggs---s~Gv~ 147 (296)
T PRK14569 82 EIKHTSSSMKSSVITMDKMISKEILMH-------HRMPTPMAKFLTDKLV----AEDEISFPVAVKPSSGGS---SIATF 147 (296)
T ss_pred CCCeeCCCHHHHHHHHCHHHHHHHHHH-------CCCCCCCeEEEchhhh----hHhhcCCCEEEEeCCCCC---CcCeE
Confidence 899875 67999999999999999998 6999999988865211 135689999999998743 58899
Q ss_pred EEeChhhhccC------CCceEEEeccCCCCeEEEEEEECCEEEE-EEeccCCCchhhhhhhcCCccccccccccccCCc
Q 037279 159 LIFDSQGLESM------TAPFVLQEFVNHGGFIFKVYVAGMNVKC-VKRKSLPDISEEKLKSLKGFLPFSRISNLIDNDK 231 (327)
Q Consensus 159 lv~~~~~l~~l------~~p~vvQefI~h~g~d~KV~ViG~~v~~-~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~ 231 (327)
++.++++|... ..++++|||| .|+++.|.|+|+.... +...+.. .++.|.. ++...+
T Consensus 148 ~v~~~~eL~~a~~~~~~~~~~lvEefI--~G~E~tv~vl~~~~~~~~~i~~~~-----------~~~~~~~--k~~~~~- 211 (296)
T PRK14569 148 KVKSIQELKHAYEEASKYGEVMIEQWV--TGKEITVAIVNDEVYSSVWIEPQN-----------EFYDYES--KYSGKS- 211 (296)
T ss_pred EcCCHHHHHHHHHHHHhcCCEEEEccc--ccEEEEEEEECCcCcceEEEecCC-----------CcCChhh--ccCCCc-
Confidence 99999888532 2479999999 4899999999997632 2222111 1112211 111100
Q ss_pred ccccCCCCCCCCCccccccCCCC--cHHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCcEEEEEEcCCCCCCCCCC
Q 037279 232 KVHDDGKKNSQGDEVDLESVEMP--SQSFLCELARGMREALGLN-LFNFDVMRDARDSNRYLIIDVNYFPGYAKMPG 305 (327)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~VidVN~fPg~~g~~~ 305 (327)
....+..++ ..++++++|.++.++||+. +++||++.+. +| .+||+|||..||+.....
T Consensus 212 --------------~~~~P~~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvD~~~~~-~g-~~~vlEIN~~Pg~t~~s~ 272 (296)
T PRK14569 212 --------------IYHSPSGLCEQKELEVRQLAKKAYDLLGCSGHARVDFIYDD-RG-NFYIMEINSSPGMTDNSL 272 (296)
T ss_pred --------------EEEeCCCCCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEcC-CC-CEEEEEeeCCCCCCCcCH
Confidence 000111122 2458999999999999986 7789999975 35 489999999999986543
No 18
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=99.86 E-value=4.1e-20 Score=177.42 Aligned_cols=257 Identities=17% Similarity=0.239 Sum_probs=171.9
Q ss_pred ceEEEEEeCC-ccccccch---hHHHHHHHhCCCeEEEeCCCCC------------cc---------------ccC--Cc
Q 037279 9 RFRIGYALAP-KKGQSLIQ---PSLLTKASERGIDLIPIDPIKP------------LV---------------EQG--PF 55 (327)
Q Consensus 9 ~~~vG~~~~~-~k~~~~~~---~~l~~~~~~~gi~~~~ld~~~~------------l~---------------~q~--~~ 55 (327)
+.+|++++=- +.+..... ..+.++.++.|+++.++|+.++ +. +.. .+
T Consensus 3 ~~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (333)
T PRK01966 3 KMRVALLFGGRSAEHEVSLVSAKSVLKALDKEKYEVVPIGITKDGRWYLIDADNMELADDDNDKEDLSLLILPSGGSEEV 82 (333)
T ss_pred CcEEEEEeCCCCCcchhhHHHHHHHHHHhcccCCEEEEEEECCCCCEeeccchhhhcccccccccccchhccccccCccC
Confidence 4467766633 33333332 2367778888999999987753 10 011 57
Q ss_pred cEEEEccCchhH-HHHHHHHHHhCCCCcccC-cHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccch---h
Q 037279 56 DCIVHKLYGPDW-TRQLQQFSSQNPNVPIID-SPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSL---T 130 (327)
Q Consensus 56 Dvilhk~~~~~~-~~~l~~~~~~~p~v~Vid-~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~---~ 130 (327)
|+++.-+..... ...++.+++. .|++.+- ++.+..+++||..|.++|.+ .|||+|+++.+.+.+.. .
T Consensus 83 D~vf~~lhG~~gedg~iq~lle~-~gipy~G~~~~a~~l~~DK~~~k~~l~~-------~GIp~p~~~~~~~~~~~~~~~ 154 (333)
T PRK01966 83 DVVFPVLHGPPGEDGTIQGLLEL-LGIPYVGCGVLASALSMDKILTKRLLAA-------AGIPVAPYVVLTRGDWEEASL 154 (333)
T ss_pred CEEEEccCCCCCCCcHHHHHHHH-cCCCccCCCHHHHHHHhCHHHHHHHHHH-------cCCCCCCEEEEeccccchhhH
Confidence 999876643211 1235566544 5899886 48899999999999999998 69999999999765442 1
Q ss_pred HHHhccCCCcEEEeeccCCCCccceeeEEEeChhhhcc-------CCCceEEEeccCCCCeEEEEEEECCEEEEEEeccC
Q 037279 131 SIEDLKLTFPVIAKPLVADGSVKSHQMYLIFDSQGLES-------MTAPFVLQEFVNHGGFIFKVYVAGMNVKCVKRKSL 203 (327)
Q Consensus 131 ~~~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~~~~~l~~-------l~~p~vvQefI~h~g~d~KV~ViG~~v~~~~R~S~ 203 (327)
......++||+|+||..++| |.++.++++.++|.. ...++++||||+ |+++.|.|+|+...+ +
T Consensus 155 ~~~~~~~~~P~vVKP~~~gs---S~Gv~~v~~~~el~~a~~~~~~~~~~vlvEefI~--G~E~~v~vl~~~~~~-----~ 224 (333)
T PRK01966 155 AEIEAKLGLPVFVKPANLGS---SVGISKVKNEEELAAALDLAFEYDRKVLVEQGIK--GREIECAVLGNDPKA-----S 224 (333)
T ss_pred HHHHHhcCCCEEEEeCCCCC---ccCEEEECCHHHHHHHHHHHHhcCCcEEEEcCcC--CEEEEEEEECCCCeE-----c
Confidence 22245789999999999753 578999999988753 357899999996 899999999963110 1
Q ss_pred CCchhhhhhhcCCccccccccccccCCcccccCCCCCCCCCccccccCCCC--cHHHHHHHHHHHHHHhCCc-EeEEEEE
Q 037279 204 PDISEEKLKSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVEMP--SQSFLCELARGMREALGLN-LFNFDVM 280 (327)
Q Consensus 204 ~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~lA~~~~~~lGl~-l~G~Dvi 280 (327)
+. ++.....+++.|+. ++..+. + . ...+..++ ...+++++|.++.++||+. ++.+|++
T Consensus 225 ~~---~ei~~~~~~~d~~~--ky~~~~---~--------~---~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~rvDf~ 285 (333)
T PRK01966 225 VP---GEIVKPDDFYDYEA--KYLDGS---A--------E---LIIPADLSEELTEKIRELAIKAFKALGCSGLARVDFF 285 (333)
T ss_pred cc---EEEecCCceEcHHH--ccCCCC---c--------e---EEeCCCCCHHHHHHHHHHHHHHHHHhCCcceEEEEEE
Confidence 10 01111112333332 332110 0 0 01122222 2467899999999999984 7789999
Q ss_pred EeCCCCCcEEEEEEcCCCCCCCCC
Q 037279 281 RDARDSNRYLIIDVNYFPGYAKMP 304 (327)
Q Consensus 281 ~~~~~g~~~~VidVN~fPg~~g~~ 304 (327)
.+.+ |+ +||+|||..||+....
T Consensus 286 ~~~~-g~-~~vlEiNt~Pg~t~~s 307 (333)
T PRK01966 286 LTED-GE-IYLNEINTMPGFTPIS 307 (333)
T ss_pred EcCC-CC-EEEEEeeCCCCCCccc
Confidence 9753 53 8999999999998754
No 19
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=99.86 E-value=4.2e-20 Score=179.30 Aligned_cols=218 Identities=14% Similarity=0.137 Sum_probs=147.4
Q ss_pred CccEEEEccCchhH-HHHHHHHHHhCCCCcccCcH-HHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCc-----
Q 037279 54 PFDCIVHKLYGPDW-TRQLQQFSSQNPNVPIIDSP-DSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEM----- 126 (327)
Q Consensus 54 ~~Dvilhk~~~~~~-~~~l~~~~~~~p~v~Vid~~-~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~----- 126 (327)
.+|+++.-+..... ...+|.++.. .|+|++.+- .+..+|+||..+-++|.+ .|||||++..+...
T Consensus 87 ~~D~vf~~lhG~~GEdg~iqglle~-~giPy~Gs~~~asal~~DK~~tK~~l~~-------~GIpt~p~~~~~~~~~~~~ 158 (364)
T PRK14570 87 EIDVVFPIVHGRTGEDGAIQGFLKV-MDIPCVGAGILGSAISINKYFCKLLLKS-------FNIPLVPFIGFRKYDYFLD 158 (364)
T ss_pred CCCEEEEcCCCCCCCcCHHHHHHHH-cCCCccCCCHHHHHHHHCHHHHHHHHHH-------cCCCCCCEEEEeccccccc
Confidence 47998877754211 2345555544 589999976 699999999999999998 69999998887542
Q ss_pred -cchhHHHhccCCCcEEEeeccCCCCccceeeEEEeChhhhcc-------CCCceEEEeccCCCCeEEEEEEECCEEEEE
Q 037279 127 -KSLTSIEDLKLTFPVIAKPLVADGSVKSHQMYLIFDSQGLES-------MTAPFVLQEFVNHGGFIFKVYVAGMNVKCV 198 (327)
Q Consensus 127 -~~~~~~~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~~~~~l~~-------l~~p~vvQefI~h~g~d~KV~ViG~~v~~~ 198 (327)
+++.+.+...++||+|+||..++ | |.|+.++.+.++|.. .+.++++||||. |+++.|.|+|+....+
T Consensus 159 ~~~~~~~~~~~lg~PviVKP~~~G-s--S~Gv~~v~~~~el~~al~~a~~~~~~vlVEefI~--GrEi~v~Vlg~~~~~v 233 (364)
T PRK14570 159 KEGIKKDIKEVLGYPVIVKPAVLG-S--SIGINVAYNENQIEKCIEEAFKYDLTVVIEKFIE--AREIECSVIGNEQIKI 233 (364)
T ss_pred hHHHHHHHHHhcCCCEEEEeCCCC-C--CCcEEEeCCHHHHHHHHHHHHhCCCCEEEECCcC--CEEEEEEEECCCCceE
Confidence 22222234578999999999864 3 568999999988753 346799999996 8999999999853111
Q ss_pred EeccCCCchhhhhhh-cCCccccccccccccCCcccccCCCCCCCCCccccccCCCC--cHHHHHHHHHHHHHHhCCc-E
Q 037279 199 KRKSLPDISEEKLKS-LKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVEMP--SQSFLCELARGMREALGLN-L 274 (327)
Q Consensus 199 ~R~S~~~~~~~~~~~-~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~lA~~~~~~lGl~-l 274 (327)
+ |. .+... ..+++.|+. |+.... . .+.....+..++ ..+.++++|.++.++||+. +
T Consensus 234 ---~-~~---~Ei~~~~~~f~dy~~--Ky~~~~---~--------~~~~~~~Pa~l~~e~~~~i~~~A~~~~~aLg~~G~ 293 (364)
T PRK14570 234 ---F-TP---GEIVVQDFIFYDYDA--KYSTIP---G--------NSIVFNIPAHLDTKHLLDIKEYAFLTYKNLELRGM 293 (364)
T ss_pred ---e-ee---EEEEeCCCCccCHHH--hcCCCC---C--------CceEEECCCCCCHHHHHHHHHHHHHHHHHhCCcce
Confidence 0 10 01100 012344432 331100 0 000001122222 2468999999999999996 7
Q ss_pred eEEEEEEeCCCCCcEEEEEEcCCCCCCCCCC
Q 037279 275 FNFDVMRDARDSNRYLIIDVNYFPGYAKMPG 305 (327)
Q Consensus 275 ~G~Dvi~~~~~g~~~~VidVN~fPg~~g~~~ 305 (327)
+.||++.+.++| .+||+|||..||+.....
T Consensus 294 ~RvDf~l~~~~g-~~yvlEiNt~PG~t~~S~ 323 (364)
T PRK14570 294 ARIDFLIEKDTG-LIYLNEINTIPGFTDISM 323 (364)
T ss_pred EEEEEEEECCCC-cEEEEEeeCCCCCCcccH
Confidence 789999985335 489999999999987643
No 20
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=99.84 E-value=1e-19 Score=172.43 Aligned_cols=199 Identities=15% Similarity=0.118 Sum_probs=127.1
Q ss_pred cccCcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHH-hccCCC-cEEEeeccCCCCccceeeEE
Q 037279 82 PIIDSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIE-DLKLTF-PVIAKPLVADGSVKSHQMYL 159 (327)
Q Consensus 82 ~Vid~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~-~~~l~~-P~VvKP~~~~Gs~~sh~m~l 159 (327)
.-.|+-+...+|.||+.+..+|.+ +|||+|+|+++.+.+...+.+ ..--++ |+|+||+.| | +++++.+
T Consensus 24 ~~~N~r~~~~~~~DK~~t~~lL~~-------aglpvP~T~~~~s~~~~~~~l~~~~~~~~~VVVKPl~G--s-~GrGI~~ 93 (317)
T TIGR02291 24 LRYNKRSLYPLVDDKLKTKIIAQA-------AGITVPELYGVIHNQAEVKTIHNIVKDHPDFVIKPAQG--S-GGKGILV 93 (317)
T ss_pred HhcCCchhccccccHHHHHHHHHH-------cCCCCCCEEEecCchhhHHHHHHHHccCCCEEEEECCC--C-CccCeEE
Confidence 346888899999999999999998 699999999999865433322 221245 699999997 4 8899999
Q ss_pred EeChhhhc--------------------------cCCCc--eEEEeccCCC-----------CeEEEEEEECCEEEE-EE
Q 037279 160 IFDSQGLE--------------------------SMTAP--FVLQEFVNHG-----------GFIFKVYVAGMNVKC-VK 199 (327)
Q Consensus 160 v~~~~~l~--------------------------~l~~p--~vvQefI~h~-----------g~d~KV~ViG~~v~~-~~ 199 (327)
+.+.++.. .+..+ .++|||+.++ ..|+||+|+|+++++ +.
T Consensus 94 i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ly~l~~~~~~~lvE~~i~~~~~~~~~~~~~v~diRV~vv~~~~vaa~~ 173 (317)
T TIGR02291 94 ITSRKDGRYRKPSGATINKEEIERHVSNILAGLYSLGGKNDVALIEYRVKFDPCFDGFSYEGVPDIRIIVFKGYPVMAMM 173 (317)
T ss_pred EEeccccccccccccccchHHHHHHHHHHHHHHHhccCCCcEEEEEeeccCCcchhccccCCCCCEEEEEECCEEEEEEE
Confidence 97763311 12222 5667886332 279999999999987 55
Q ss_pred eccCC--CchhhhhhhcCCc-cccccccccccCCcccccCCCCCCCCCccccc------cCCCCcHHHHHHHHHHHHHHh
Q 037279 200 RKSLP--DISEEKLKSLKGF-LPFSRISNLIDNDKKVHDDGKKNSQGDEVDLE------SVEMPSQSFLCELARGMREAL 270 (327)
Q Consensus 200 R~S~~--~~~~~~~~~~~g~-~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~lA~~~~~~l 270 (327)
|.+.. +|.+|-..+ |. ...+ +.++. ....+-.++.. ..+|. ....|..+++.++|.++.+++
T Consensus 174 R~~~~~~~~~tN~~~G--g~~~~vd----l~tG~--l~~~~~~~~~~-~~HP~t~~~~~g~~ip~~~el~~la~~A~~~~ 244 (317)
T TIGR02291 174 RLPTRASDGKANLHQG--AVGVGID----LATGK--TIRAVWFNQPI-THHPDTGKDLSGLQVPHWERLLELAASCWELT 244 (317)
T ss_pred EccCccCCcccccccC--Cceeeee----cCCCc--cccccccCCcc-ccCCCcccccccCCChhHHHHHHHHHHHHHhc
Confidence 65532 344331100 00 0000 00000 00000000000 00110 122344678999999999999
Q ss_pred CCcEeEEEEEEeCCCCCcEEEEEEcCCCCCC
Q 037279 271 GLNLFNFDVMRDARDSNRYLIIDVNYFPGYA 301 (327)
Q Consensus 271 Gl~l~G~Dvi~~~~~g~~~~VidVN~fPg~~ 301 (327)
|+.++|+|++++.++ +++|+|||..|||.
T Consensus 245 g~~~~GvDii~~~~~--g~~VlEVN~~Pg~t 273 (317)
T TIGR02291 245 GLGYMGVDMVLDKEE--GPLVLELNARPGLA 273 (317)
T ss_pred CCCeEEEEEEEeCCC--CEEEEEeCCCCCCC
Confidence 999999999997543 38999999999997
No 21
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=99.84 E-value=8.7e-19 Score=168.88 Aligned_cols=256 Identities=18% Similarity=0.228 Sum_probs=170.3
Q ss_pred ceEEEEEeCCcc-ccccch---hHHHHHHHhCCCeEEEeCCCCC------------c--------------------c--
Q 037279 9 RFRIGYALAPKK-GQSLIQ---PSLLTKASERGIDLIPIDPIKP------------L--------------------V-- 50 (327)
Q Consensus 9 ~~~vG~~~~~~k-~~~~~~---~~l~~~~~~~gi~~~~ld~~~~------------l--------------------~-- 50 (327)
+.+||+++=-.- +..... ..+.++.++.|++++++|+++. + .
T Consensus 3 ~~~i~vl~GG~S~E~evSl~s~~~v~~~l~~~~~~v~~i~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (343)
T PRK14568 3 RIKVGILFGGCSEEHPVSVKSAIEVARNLDTEKYEPFYIGITKSGVWKLCDGPCAEWENGSCRPAVLSPDRKVHGLLVLE 82 (343)
T ss_pred CcEEEEEECCCCCchHHHHHhHHHHHHhhcccCCeEEEEEECCCCcEEeCCccccccccccccceeeccccccccccccC
Confidence 456777765432 222222 2366777888999999987652 0 0
Q ss_pred ----ccCCccEEEEccCchhH-HHHHHHHHHhCCCCccc-CcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEc
Q 037279 51 ----EQGPFDCIVHKLYGPDW-TRQLQQFSSQNPNVPII-DSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVS 124 (327)
Q Consensus 51 ----~q~~~Dvilhk~~~~~~-~~~l~~~~~~~p~v~Vi-d~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~ 124 (327)
....+|+++.-+..... ...+|.++.. .|++.+ .++.+..+|+||..|.++|++ .|||+|+++.+.
T Consensus 83 ~~~~~~~~~d~vf~~lhG~~gedg~iq~lle~-~gipy~G~~~~asai~~DK~~~k~~l~~-------~GIp~p~~~~~~ 154 (343)
T PRK14568 83 QGEYETIRLDVVFPVLHGKLGEDGAIQGLLEL-SGIPYVGCDIQSSALCMDKSLAYIVAKN-------AGIATPAFWTVT 154 (343)
T ss_pred ccccccccCCEEEEcCCCCCCCchHHHHHHHH-cCCCccCCCHHHHHHHhCHHHHHHHHHH-------cCcCcCCEEEEE
Confidence 01246888877654211 2355666544 589988 468899999999999999998 699999999998
Q ss_pred CccchhHHHhccCCCcEEEeeccCCCCccceeeEEEeChhhhcc-------CCCceEEEeccCCCCeEEEEEEECCEE--
Q 037279 125 EMKSLTSIEDLKLTFPVIAKPLVADGSVKSHQMYLIFDSQGLES-------MTAPFVLQEFVNHGGFIFKVYVAGMNV-- 195 (327)
Q Consensus 125 ~~~~~~~~~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~~~~~l~~-------l~~p~vvQefI~h~g~d~KV~ViG~~v-- 195 (327)
+.+... ...++||+|+||..++ | |.++.++.+.++|.. ....+++||||+ |+.+.|.|+|+..
T Consensus 155 ~~~~~~---~~~l~~P~iVKP~~~g-s--S~Gv~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~--G~E~sv~vl~~~~~~ 226 (343)
T PRK14568 155 ADERPD---AATLTYPVFVKPARSG-S--SFGVSKVNSADELDYAIESARQYDSKVLIEEAVV--GSEVGCAVLGNGADL 226 (343)
T ss_pred CCchhh---hhhcCCCEEEEeCCCC-C--CCCEEEeCCHHHHHHHHHHHHhcCCcEEEECCcC--CEEEEEEEEcCCCCc
Confidence 654332 2468999999999974 3 589999999988853 356899999995 8999999998742
Q ss_pred EE--EEeccCCCchhhhhhhcCCccccccccccccCCcccccCCCCCCCCCccccccCCCCc--HHHHHHHHHHHHHHhC
Q 037279 196 KC--VKRKSLPDISEEKLKSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVEMPS--QSFLCELARGMREALG 271 (327)
Q Consensus 196 ~~--~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~lA~~~~~~lG 271 (327)
.+ ..+... ..+++.++. ++.... . . +......+..++. .++++++|.++.++||
T Consensus 227 ~~~~~~~i~~----------~~~~~~~~~--k~~~~~---g-----~--~~~~~~~Pa~l~~~~~~~i~~~a~~~~~~Lg 284 (343)
T PRK14568 227 VVGEVDQIRL----------SHGFFRIHQ--ENEPEK---G-----S--ENSTIIVPADISAEERSRVQETAKAIYRALG 284 (343)
T ss_pred ceecceEEec----------CCCccchhh--hhcccc---C-----C--CCeeEEeCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 11 111111 112333321 111000 0 0 0000111223332 4678999999999999
Q ss_pred C-cEeEEEEEEeCCCCCcEEEEEEcCCCCCCCCC
Q 037279 272 L-NLFNFDVMRDARDSNRYLIIDVNYFPGYAKMP 304 (327)
Q Consensus 272 l-~l~G~Dvi~~~~~g~~~~VidVN~fPg~~g~~ 304 (327)
+ .++.+|++.+. +|. +||+|||..||+....
T Consensus 285 ~~G~~rvDf~l~~-~g~-~~llEINt~Pg~t~~S 316 (343)
T PRK14568 285 CRGLARVDMFLQE-DGT-VVLNEVNTLPGFTSYS 316 (343)
T ss_pred CCcEEEEEEEEeC-CCC-EEEEEeeCCCCCCccC
Confidence 9 58889999985 354 8999999999998654
No 22
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=99.84 E-value=4.6e-19 Score=188.88 Aligned_cols=246 Identities=18% Similarity=0.278 Sum_probs=156.5
Q ss_pred chhHHHHHHHhCCCeEEEeCCCCCccccCCccEEEEccCchhHHHHHHHHHHhCCCCcccCcHHHHHHhcCHHHHHHHHH
Q 037279 25 IQPSLLTKASERGIDLIPIDPIKPLVEQGPFDCIVHKLYGPDWTRQLQQFSSQNPNVPIIDSPDSIERLHNRISMLEVVT 104 (327)
Q Consensus 25 ~~~~l~~~~~~~gi~~~~ld~~~~l~~q~~~Dvilhk~~~~~~~~~l~~~~~~~p~v~Vid~~~ai~~~~dR~~~~~~L~ 104 (327)
.+..|+++|.+|||.+..||-. .+... .+..--+++ +. ...=.|+..++.++.||..|.++|.
T Consensus 160 st~~i~~~a~~rgip~~~l~~~-~~~ql-g~g~~~~~~---------~~------~~t~~~s~ia~~ia~DK~~tk~lL~ 222 (864)
T TIGR02068 160 STAAIVDEAEKRGIPYMRLSAG-SLVQL-GYGSRQKRI---------QA------TETDRTSAIAVEIACDKDLTKEILS 222 (864)
T ss_pred cHHHHHHHHHHCCCCEEEECCC-CEEEe-cCCCEEEEE---------Ee------ecCCCCcHHHHHHHcCHHHHHHHHH
Confidence 5667899999999999999743 22211 111111111 11 1233567889999999999999999
Q ss_pred hcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEEEeeccCCCCccceeeEE-EeChhhhccC-------CCceEEE
Q 037279 105 QLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKPLVADGSVKSHQMYL-IFDSQGLESM-------TAPFVLQ 176 (327)
Q Consensus 105 ~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~VvKP~~~~Gs~~sh~m~l-v~~~~~l~~l-------~~p~vvQ 176 (327)
+ .|||+|++.++.+.+++.+. ...++||+|+||..|+ .+.++.+ +.+++++... ..++++|
T Consensus 223 ~-------~GIpvP~~~~~~s~~ea~~~-~~~ig~PvVVKP~~g~---~G~GV~l~v~s~~el~~a~~~a~~~~~~vlVE 291 (864)
T TIGR02068 223 D-------AGVPVPEGTVVQSAEDAWEA-AQDLGYPVVIKPYDGN---HGRGVTINILTRDEIESAYEAAVEESSGVIVE 291 (864)
T ss_pred H-------cCcCCCCEEEECCHHHHHHH-HHHcCCCEEEEECCCC---CccCEEEEeCCHHHHHHHHHHHHhhCCcEEEE
Confidence 8 69999999999887766543 4568999999999873 4688998 8999887532 4589999
Q ss_pred eccCCCCeEEEEEEECCEEEEEEeccCCCchhh------hhhh--------cCCc------cccccc------------c
Q 037279 177 EFVNHGGFIFKVYVAGMNVKCVKRKSLPDISEE------KLKS--------LKGF------LPFSRI------------S 224 (327)
Q Consensus 177 efI~h~g~d~KV~ViG~~v~~~~R~S~~~~~~~------~~~~--------~~g~------~~f~~~------------s 224 (327)
+||+ |++|||+|+|++++++.++-.+++.-+ ++.. ..+. +.++.. .
T Consensus 292 efI~--G~e~rvlVv~~~vvaa~~R~p~~V~GdG~~ti~eLi~~~n~~p~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~~ 369 (864)
T TIGR02068 292 RFIT--GRDHRLLVVGGKVVAVAERVPAHVIGDGVHTIEELIEQINTDPLRGDGHDKPLTKIRLDSTARLELAKQGLTLD 369 (864)
T ss_pred Eecc--CCEEEEEEECCEEEEEEEecCCceecCccccHHHHHHHhccCcccCccccCCccccCCCHHHHHHHHHcCCCcc
Confidence 9995 899999999999998665544442110 0000 0000 011100 0
Q ss_pred ccccCCcccccCCCCC-CC-CCccccccCCCCcHHHHHHHHHHHHHHhCCcEeEEEEEEeCCC----CCcEEEEEEcCCC
Q 037279 225 NLIDNDKKVHDDGKKN-SQ-GDEVDLESVEMPSQSFLCELARGMREALGLNLFNFDVMRDARD----SNRYLIIDVNYFP 298 (327)
Q Consensus 225 ~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~l~~lA~~~~~~lGl~l~G~Dvi~~~~~----g~~~~VidVN~fP 298 (327)
..+...+..-.+.++| +. |...+ . .. ...++..++|.++++++||+++|||++.++-+ +..+.|||||..|
T Consensus 370 sV~~~g~~v~l~~~~Nls~Gg~~~d-~-td-~i~~~~~~~a~~aa~~~gl~i~gvD~i~~di~~~~~~~~~~iiEvN~~p 446 (864)
T TIGR02068 370 SVPAKGRIVYLRATANLSTGGVAID-R-TD-EIHPENAATAVRAAKIIGLDIAGVDIVTEDISRPLRDTDGAIVEVNAAP 446 (864)
T ss_pred ccCCCCCEEEEeccccccCCCceEe-c-cc-ccCHHHHHHHHHHHHHhCCCeEEEEEEecCCCCCccccCcEEEEEcCCc
Confidence 0000000000000111 11 21111 1 11 23567899999999999999999999986311 1236899999999
Q ss_pred CCCCC
Q 037279 299 GYAKM 303 (327)
Q Consensus 299 g~~g~ 303 (327)
|+..-
T Consensus 447 ~~~~h 451 (864)
T TIGR02068 447 GLRMH 451 (864)
T ss_pred chhhc
Confidence 98643
No 23
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=99.83 E-value=6.1e-19 Score=170.20 Aligned_cols=196 Identities=18% Similarity=0.202 Sum_probs=134.4
Q ss_pred HHHHHHHhCCCCcccC-cHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCcc------chhHHHhccCCCcEE
Q 037279 70 QLQQFSSQNPNVPIID-SPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMK------SLTSIEDLKLTFPVI 142 (327)
Q Consensus 70 ~l~~~~~~~p~v~Vid-~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~------~~~~~~~~~l~~P~V 142 (327)
.+|.++.. .|++++- ++.++.+|+||+.|.++|.+ .|||||+++.+.+.+ .+.+. ...++||+|
T Consensus 105 ~iq~~le~-~gipy~Gs~~~a~~i~~DK~~~k~~l~~-------~GI~~p~~~~~~~~~~~~~~~~~~~~-~~~l~~Pvv 175 (347)
T PRK14572 105 RIQGFLDT-LGIPYTGSGVLASALAMDKTRANQIFLQ-------SGQKVAPFFELEKLKYLNSPRKTLLK-LESLGFPQF 175 (347)
T ss_pred HHHHHHHH-cCcCcCCCCHHHHHHHhCHHHHHHHHHH-------cCCCCCCEEEEEccccccChHHHHHH-HHhcCCCEE
Confidence 35555544 4899885 58999999999999999998 699999999986422 11121 346899999
Q ss_pred EeeccCCCCccceeeEEEeChhhhcc-------CCCceEEEeccCCCCeEEEEEEECC----EE--EEEEeccCCCchhh
Q 037279 143 AKPLVADGSVKSHQMYLIFDSQGLES-------MTAPFVLQEFVNHGGFIFKVYVAGM----NV--KCVKRKSLPDISEE 209 (327)
Q Consensus 143 vKP~~~~Gs~~sh~m~lv~~~~~l~~-------l~~p~vvQefI~h~g~d~KV~ViG~----~v--~~~~R~S~~~~~~~ 209 (327)
+||..|+ + |.++.++.+.++|.. ...++++||||+ |+++.|.|+|+ +. .+ +|-.
T Consensus 176 VKP~~gg-s--S~GV~~v~~~~el~~a~~~~~~~~~~vlVEefI~--G~E~sv~vi~~~~~g~~~~~~-----l~~~--- 242 (347)
T PRK14572 176 LKPVEGG-S--SVSTYKITNAEQLMTLLALIFESDSKVMSQSFLS--GTEVSCGVLERYRGGKRNPIA-----LPAT--- 242 (347)
T ss_pred EecCCCC-C--CCCEEEECCHHHHHHHHHHHHhcCCCEEEEcCcc--cEEEEEEEEeCccCCCCCcee-----cccE---
Confidence 9999974 3 589999999988753 246799999994 89999999973 21 11 0000
Q ss_pred hhhhcCCccccccccccccCCcccccCCCCCCCCCccccccCCCC--cHHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCC
Q 037279 210 KLKSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVEMP--SQSFLCELARGMREALGLN-LFNFDVMRDARDS 286 (327)
Q Consensus 210 ~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~lA~~~~~~lGl~-l~G~Dvi~~~~~g 286 (327)
+.....+++.|.+ ++..+. . ....+..++ ..++++++|.++.++||+. ++++|++.++ |
T Consensus 243 ei~~~~~~~d~~~--ky~~~~---~-----------~~~~Pa~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvD~~~~~--~ 304 (347)
T PRK14572 243 EIVPGGEFFDFES--KYKQGG---S-----------EEITPARISDQEMKRVQELAIRAHESLGCKGYSRTDFIIVD--G 304 (347)
T ss_pred EEecCCCccCHHH--ccCCCC---e-----------EEEECCCCCHHHHHHHHHHHHHHHHHhCCcceeEEEEEEEC--C
Confidence 0000112334432 332111 0 001122222 2457899999999999988 7789999973 3
Q ss_pred CcEEEEEEcCCCCCCCCCCh
Q 037279 287 NRYLIIDVNYFPGYAKMPGY 306 (327)
Q Consensus 287 ~~~~VidVN~fPg~~g~~~~ 306 (327)
.+||+|||..||+.....+
T Consensus 305 -~~~vlEiNt~PG~t~~S~~ 323 (347)
T PRK14572 305 -EPHILETNTLPGMTETSLI 323 (347)
T ss_pred -cEEEEeeeCCCCCCcccHH
Confidence 3899999999999876433
No 24
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=99.81 E-value=1.6e-18 Score=179.65 Aligned_cols=258 Identities=16% Similarity=0.220 Sum_probs=162.2
Q ss_pred ccchhHHHHHHHhCCCeEEEeCCCCCccccCCccEEEEccCchhHHHHHHHHHHhCCCCcccCcHHHHHHhcCHHHHHHH
Q 037279 23 SLIQPSLLTKASERGIDLIPIDPIKPLVEQGPFDCIVHKLYGPDWTRQLQQFSSQNPNVPIIDSPDSIERLHNRISMLEV 102 (327)
Q Consensus 23 ~~~~~~l~~~~~~~gi~~~~ld~~~~l~~q~~~Dvilhk~~~~~~~~~l~~~~~~~p~v~Vid~~~ai~~~~dR~~~~~~ 102 (327)
.+.++.|+..|-++| .+..+|-...+..-+ ... -++|+++ ..+.-.|+..+..+|.||..|-++
T Consensus 419 ~~stQ~Li~~Ai~rG-~v~vlD~~~~~~~L~----------~g~----~~~~v~~-~s~ts~tS~ia~~i~~DK~~TK~i 482 (737)
T TIGR01435 419 ELSTQWKLFDVIQKG-KVEILDEAEQFLRLQ----------KGD----HIEYVKN-ANMTSKDNYVSPLIMENKVVTKKV 482 (737)
T ss_pred cHhHHHHHHHHHHCC-CEEEeCCCCCeeEee----------cCC----cceEEec-ceecCCccHHHHHHhcCHHHHHHH
Confidence 456788999999999 999998775543211 000 0112111 135567889999999999999999
Q ss_pred HHhcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEEEeeccCCCCccceeeEEEeC---hhhhc-------cCCCc
Q 037279 103 VTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKPLVADGSVKSHQMYLIFD---SQGLE-------SMTAP 172 (327)
Q Consensus 103 L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~~---~~~l~-------~l~~p 172 (327)
|.+ +|||||++.++.+.+++.+....-.+||+||||..|+ .|.|+.++.+ .+++. .....
T Consensus 483 L~~-------aGIPVP~g~~~~~~~~a~~~~~~~~g~PVVVKP~~g~---~G~GVsi~~~~~~~eel~~Al~~A~~~~~~ 552 (737)
T TIGR01435 483 LAE-------AGFRVPFGDEFSSQALALEAFSLFENKAIVVKPKSTN---YGLGITIFKNGFTLEDFQEALNIAFSEDSS 552 (737)
T ss_pred HHH-------cCcCCCCEEEECCHHHHHHHHHHhcCCCEEEeeCCCC---CcCCeEEecCcCCHHHHHHHHHHHHhcCCe
Confidence 998 6999999999987554433322222799999999974 4678998876 44443 22457
Q ss_pred eEEEeccCCCCeEEEEEEECCEEEEEEeccCCCchhhh------hh--hc----CCc---c-------------------
Q 037279 173 FVLQEFVNHGGFIFKVYVAGMNVKCVKRKSLPDISEEK------LK--SL----KGF---L------------------- 218 (327)
Q Consensus 173 ~vvQefI~h~g~d~KV~ViG~~v~~~~R~S~~~~~~~~------~~--~~----~g~---~------------------- 218 (327)
+++||||+ |++|||+|||++++++.++..+++.-++ +. .. .|. .
T Consensus 553 VLVEefI~--G~EyRv~VIg~kvvaa~~R~Pa~ViGDG~~TI~eLI~~kN~~p~Rg~~~~~pl~~I~~d~~~~~L~~qg~ 630 (737)
T TIGR01435 553 VIIEEFLP--GTEYRFFVLNDKVEAVLLRVPANVTGDGIHTVRELVAEKNTDPLRGTDHRKPLEKITGPEETLMLKEQGL 630 (737)
T ss_pred EEEEeccc--CCEEEEEEECCeEEEEEEECCCCEEECCHHHHHHHHHHhccCcccCCcccCCcccccchHHHHHHHHcCC
Confidence 99999994 9999999999999986655445542111 10 00 010 0
Q ss_pred ccccccccccCCcccccCCCCC-C-CCCccccccCCCCcHHHHHHHHHHHHHHhCCcEeEEEEEEeCCCC------CcEE
Q 037279 219 PFSRISNLIDNDKKVHDDGKKN-S-QGDEVDLESVEMPSQSFLCELARGMREALGLNLFNFDVMRDARDS------NRYL 290 (327)
Q Consensus 219 ~f~~~s~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~l~~lA~~~~~~lGl~l~G~Dvi~~~~~g------~~~~ 290 (327)
.+++ .+...+.+-.+.+++ + +|...+.. + ...+..+++|.++++++|+.++|||+|.++-+. ..+.
T Consensus 631 tlds---Vp~~Ge~V~Lr~~aNlstGG~~iDvT--d-~ihp~~~~lA~~aa~algl~i~GVDii~~di~~p~~~~~~~~~ 704 (737)
T TIGR01435 631 TIDS---IPKKEQIVYLRENSNVSTGGDSIDMT--D-EMDDSYKQIAIRIATAVGAAICGVDLIIPDETIPDTDKHAIWG 704 (737)
T ss_pred Cccc---cCCCCCEEEEcCCCcccCCCceEecc--c-ccCHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCccccccceE
Confidence 0111 000000000000111 1 22211111 1 124678999999999999999999999864211 1278
Q ss_pred EEEEcCCCCCCC-------CC-ChHHHHHHHH
Q 037279 291 IIDVNYFPGYAK-------MP-GYESIMTDFF 314 (327)
Q Consensus 291 VidVN~fPg~~g-------~~-~~~~~l~~~~ 314 (327)
|||||..||+.. -+ ++...+++++
T Consensus 705 iiEvN~~P~l~mH~~P~~G~~r~v~~~ild~l 736 (737)
T TIGR01435 705 VIEANFNPAMHMHCFPYAGEKRRLTDKVIKFL 736 (737)
T ss_pred EEEEcCCcchhhhcCCCCCCCcchHHHHHHhh
Confidence 999999999643 22 4555555543
No 25
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=99.75 E-value=2.1e-17 Score=148.23 Aligned_cols=164 Identities=23% Similarity=0.323 Sum_probs=108.5
Q ss_pred CCcCCCeEEEEcCccchhHH---HhccCCCcEEEeeccCCCCccceeeEEEeChhhhc-------cCCCceEEEeccCCC
Q 037279 113 EKFGVPNQVVVSEMKSLTSI---EDLKLTFPVIAKPLVADGSVKSHQMYLIFDSQGLE-------SMTAPFVLQEFVNHG 182 (327)
Q Consensus 113 ~~i~~P~~~~~~~~~~~~~~---~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~~~~~l~-------~l~~p~vvQefI~h~ 182 (327)
.||+||+++++...+..... ....++||+++||..+ || |.|+.++++.++|. .++.++++|||| +
T Consensus 5 ~gI~tp~~~~~~~~~~~~~~~~~~~~~l~~P~~VKP~~~-Gs--S~Gi~~v~~~~el~~ai~~~~~~~~~vlVEefI--~ 79 (203)
T PF07478_consen 5 AGIPTPPYVVVKKNEDDSDSIEKILEDLGFPLFVKPASE-GS--SIGISKVHNEEELEEAIEKAFKYDDDVLVEEFI--S 79 (203)
T ss_dssp TT-BB-SEEEEETTSHHHHHHHHHHHHHSSSEEEEESST-ST--TTTEEEESSHHHHHHHHHHHTTTHSEEEEEE----S
T ss_pred cCCCCCCEEEEecccccchhHHHHHhhcCCCEEEEECCC-Cc--cEEEEEcCCHHHHHHHHHHHhhhcceEEEEeee--c
Confidence 69999999999876554322 2678999999999986 44 67899999998885 345799999999 7
Q ss_pred CeEEEEEEEC---CEEEEEEeccCCCchhhhhhhcCCccccccccccccCCcccccCCCCCCCCCccccccCCCC--cHH
Q 037279 183 GFIFKVYVAG---MNVKCVKRKSLPDISEEKLKSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVEMP--SQS 257 (327)
Q Consensus 183 g~d~KV~ViG---~~v~~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 257 (327)
|+++.|.|+| ..+........+ .+++.|+. |+.... ..+. ...+..++ ...
T Consensus 80 G~E~tv~vl~~~~~~~~~~~ei~~~----------~~~~d~~~--Ky~~~~-~~~~-----------~~~pa~l~~~~~~ 135 (203)
T PF07478_consen 80 GREFTVGVLGNGEPRVLPPVEIVFP----------SEFYDYEA--KYQPAD-SETE-----------YIIPADLSEELQE 135 (203)
T ss_dssp SEEEEEEEEESSSTEEEEEEEEEES----------SSEEEHHH--HHSGCC-SCEE-----------EESS-SS-HHHHH
T ss_pred ccceEEEEEecCCcccCceEEEEcC----------CCceehhh--eeccCC-CceE-----------EEecCCCCHHHHH
Confidence 9999999999 444332222211 13455543 332100 0000 11122222 256
Q ss_pred HHHHHHHHHHHHhCCcEe-EEEEEEeCCCCCcEEEEEEcCCCCCCCCCChH
Q 037279 258 FLCELARGMREALGLNLF-NFDVMRDARDSNRYLIIDVNYFPGYAKMPGYE 307 (327)
Q Consensus 258 ~l~~lA~~~~~~lGl~l~-G~Dvi~~~~~g~~~~VidVN~fPg~~g~~~~~ 307 (327)
.++++|.++.++||+.=+ -||++.++ +| .+|++|||..||+.....++
T Consensus 136 ~i~~~a~~a~~~lg~~~~~RiD~rv~~-~g-~~~~lEiNt~PGlt~~S~~p 184 (203)
T PF07478_consen 136 KIKEIAKKAFKALGCRGYARIDFRVDE-DG-KPYFLEINTIPGLTPTSLFP 184 (203)
T ss_dssp HHHHHHHHHHHHTTTCSEEEEEEEEET-TT-EEEEEEEESS-G-STTSHHH
T ss_pred HHHHHHHHHHHHHcCCCceeEEEEecc-CC-ceEEEeccCcccccCCCHHH
Confidence 899999999999999744 59999985 35 49999999999998765554
No 26
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=99.74 E-value=4.2e-16 Score=165.64 Aligned_cols=265 Identities=15% Similarity=0.137 Sum_probs=173.3
Q ss_pred CceEEEEEeCCc-cccccc---hhHHHHHHHhCCCeEEEeCCCCC--c--c---------------------c-cCCccE
Q 037279 8 QRFRIGYALAPK-KGQSLI---QPSLLTKASERGIDLIPIDPIKP--L--V---------------------E-QGPFDC 57 (327)
Q Consensus 8 ~~~~vG~~~~~~-k~~~~~---~~~l~~~~~~~gi~~~~ld~~~~--l--~---------------------~-q~~~Dv 57 (327)
++.+|++++=-. -+.... -..+.++.++.|++++++|+.+. . . . ...+|+
T Consensus 450 ~~~~i~vl~GG~S~E~~vSl~s~~~v~~al~~~~~~v~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 529 (809)
T PRK14573 450 KKLSLGLVCGGKSCEHDISLLSAKNIAKYLSPEFYDVSYFLINRQGLWETVSSLETAIEEDSGKSVLSSEIAQALAKVDV 529 (809)
T ss_pred CCcEEEEEECCCCCchHHHHHhHHHHHHhhcccCcEEEEEEECCCCeEEecccccccccccccccccchhhhhccccCCE
Confidence 356777777543 233333 23367778889999999987752 0 0 0 024688
Q ss_pred EEEccCchhH-HHHHHHHHHhCCCCcccC-cHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCcc------ch
Q 037279 58 IVHKLYGPDW-TRQLQQFSSQNPNVPIID-SPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMK------SL 129 (327)
Q Consensus 58 ilhk~~~~~~-~~~l~~~~~~~p~v~Vid-~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~------~~ 129 (327)
++.=+..... ...+|.+++. .|++.+- +..+...++||..+-++|.+ .|||||++..+...+ ..
T Consensus 530 vf~~lhG~~gedg~iq~~le~-~gipy~Gs~~~asal~~DK~~~K~~l~~-------~GIpt~~~~~~~~~~~~~~~~~~ 601 (809)
T PRK14573 530 VLPILHGPFGEDGTMQGFLEI-IGKPYTGPSLAFSAIAMDKVLTKRFASD-------VGVPVVPYQPLTLAGWKREPELC 601 (809)
T ss_pred EEEcCCCCCCCChHHHHHHHH-cCCCeeCCCHHHHHHHcCHHHHHHHHHH-------CCCCCCCEEEEechhcccChHHH
Confidence 8866644211 2356666544 4788776 78899999999999999998 699999999886421 11
Q ss_pred hHHHhccCCCcEEEeeccCCCCccceeeEEEeChhhhcc-------CCCceEEEeccCCCCeEEEEEEECCEEEEEEecc
Q 037279 130 TSIEDLKLTFPVIAKPLVADGSVKSHQMYLIFDSQGLES-------MTAPFVLQEFVNHGGFIFKVYVAGMNVKCVKRKS 202 (327)
Q Consensus 130 ~~~~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~~~~~l~~-------l~~p~vvQefI~h~g~d~KV~ViG~~v~~~~R~S 202 (327)
.......++||+|+||..++ | |.|+.+++++++|.. .+.++++||||. +|+.+-|.|+|+..-... .+
T Consensus 602 ~~~~~~~lg~P~iVKP~~~G-s--S~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~i~-~grEi~v~vl~~~~~~~~-~~ 676 (809)
T PRK14573 602 LAHIVEAFSFPMFVKTAHLG-S--SIGVFEVHNVEELRDKISEAFLYDTDVFVEESRL-GSREIEVSCLGDGSSAYV-IA 676 (809)
T ss_pred HHHHHHhcCCCEEEeeCCCC-C--CCCEEEECCHHHHHHHHHHHHhcCCcEEEEeccC-CCEEEEEEEEeCCCCceE-ec
Confidence 11124679999999999974 4 479999999988753 356899999986 479999999998631100 01
Q ss_pred CCCchhhhhhhcCCccccccccccccCCcccccCCCCCCCCCccccccCCCC--cHHHHHHHHHHHHHHhCCc-EeEEEE
Q 037279 203 LPDISEEKLKSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVEMP--SQSFLCELARGMREALGLN-LFNFDV 279 (327)
Q Consensus 203 ~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~lA~~~~~~lGl~-l~G~Dv 279 (327)
.+ . +.....+++.|.+ |+.... .. .. ....+..++ ..++++++|.++.++||+. ++.||+
T Consensus 677 ~~-~---e~~~~~~f~dy~~--Ky~~~g---~~-------~~-~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~riDf 739 (809)
T PRK14573 677 GP-H---ERRGSGGFIDYQE--KYGLSG---KS-------SA-QIVFDLDLSKESQEQVLELAERIYRLLQGKGSCRIDF 739 (809)
T ss_pred cc-e---EEccCCCeeCchh--cccCCC---CC-------ce-EEecCCCCCHHHHHHHHHHHHHHHHHhCCceEEEEEE
Confidence 11 0 1111123444442 442111 00 00 001122222 2468999999999999998 556999
Q ss_pred EEeCCCCCcEEEEEEcCCCCCCCCC
Q 037279 280 MRDARDSNRYLIIDVNYFPGYAKMP 304 (327)
Q Consensus 280 i~~~~~g~~~~VidVN~fPg~~g~~ 304 (327)
+.+.+ |+ +||+|||..||+....
T Consensus 740 ~v~~~-g~-~yv~EiNt~PG~t~~s 762 (809)
T PRK14573 740 FLDEE-GN-FWLSEMNPIPGMTEAS 762 (809)
T ss_pred EEcCC-CC-EEEEEeeCCCCCCccc
Confidence 99753 54 8999999999998754
No 27
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=99.73 E-value=4.2e-16 Score=151.61 Aligned_cols=227 Identities=14% Similarity=0.249 Sum_probs=152.2
Q ss_pred hhHHHHHHHhCCCeEEEeCCCCCc-----c---------c---------cCCccEEEEccCchhHHHHHHHHHHhCCCCc
Q 037279 26 QPSLLTKASERGIDLIPIDPIKPL-----V---------E---------QGPFDCIVHKLYGPDWTRQLQQFSSQNPNVP 82 (327)
Q Consensus 26 ~~~l~~~~~~~gi~~~~ld~~~~l-----~---------~---------q~~~Dvilhk~~~~~~~~~l~~~~~~~p~v~ 82 (327)
...++.+|+++|+++..+|.+..- . + ...+|+|+.-..+. ....+..+ .+ .|++
T Consensus 11 ~~~l~~aa~~~G~~v~~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~id~v~~~~e~v-~~~~~~~l-~~-~g~~ 87 (380)
T TIGR01142 11 GKEVAIEAQRLGVEVIAVDRYANAPAMQVAHRSYVINMLDGDALRAVIEREKPDYIVPEIEAI-ATDALFEL-EK-EGYF 87 (380)
T ss_pred HHHHHHHHHHcCCEEEEEeCCCCCchhhhCceEEEcCCCCHHHHHHHHHHhCCCEEEeccCcc-CHHHHHHH-Hh-cCCe
Confidence 345778899999999999876311 0 0 01356666533221 12223332 22 3677
Q ss_pred ccCcHHHHHHhcCHHHHHHHH-HhcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEEEeeccCCCCccceeeEEEe
Q 037279 83 IIDSPDSIERLHNRISMLEVV-TQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKPLVADGSVKSHQMYLIF 161 (327)
Q Consensus 83 Vid~~~ai~~~~dR~~~~~~L-~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~ 161 (327)
+..++++++++.||..+.+++ .+ .|||+|++..+.+.+++.+. ...++||+|+||..|. +|.++.++.
T Consensus 88 ~~~~~~~~~~~~dK~~~~~~~~~~-------~gip~p~~~~~~~~~~~~~~-~~~~g~P~VvKP~~g~---~s~gv~~v~ 156 (380)
T TIGR01142 88 VVPNARATKLTMNREGIRRLAAEE-------LGLPTSRYMFADSLDELREA-VEKIGYPCVVKPVMSS---SGKGQSVVR 156 (380)
T ss_pred eCCCHHHHHHhhCHHHHHHHHHHH-------CCCCCCCceEeCCHHHHHHH-HHHcCCCEEEEECCCc---CCCCeEEEC
Confidence 889999999999999998875 66 59999999999987766543 3578999999999764 468999999
Q ss_pred ChhhhccC-----------CCceEEEeccCCCCeEEEEEEE---CCEEEEEEeccCCCchhhhhhhcCCccccccccccc
Q 037279 162 DSQGLESM-----------TAPFVLQEFVNHGGFIFKVYVA---GMNVKCVKRKSLPDISEEKLKSLKGFLPFSRISNLI 227 (327)
Q Consensus 162 ~~~~l~~l-----------~~p~vvQefI~h~g~d~KV~Vi---G~~v~~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~ 227 (327)
++++|... ..++++||||+. ++.+.|.++ ++++... ....+.. ..+.+.
T Consensus 157 ~~~el~~~~~~~~~~~~~~~~~~ivEe~i~~-~~E~sv~~~~~~~g~~~~~--~~~~~~~------~~~~~~-------- 219 (380)
T TIGR01142 157 GPEDIEKAWEYAQEGARGGAGRVIVEEFIDF-DYEITLLTVRHVDGNTTFC--APIGHRQ------IDGDYH-------- 219 (380)
T ss_pred CHHHHHHHHHHHHhhccCCCCCEEEEEecCC-CEEEEEEEEEcCCCCEEEe--cCcceEE------eCCeeE--------
Confidence 99887532 357999999973 578888877 3333211 1111100 000000
Q ss_pred cCCcccccCCCCCCCCCccccccCCCC--cHHHHHHHHHHHHHHhCC-cEeEEEEEEeCCCCCcEEEEEEcCCCCCCCCC
Q 037279 228 DNDKKVHDDGKKNSQGDEVDLESVEMP--SQSFLCELARGMREALGL-NLFNFDVMRDARDSNRYLIIDVNYFPGYAKMP 304 (327)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~lA~~~~~~lGl-~l~G~Dvi~~~~~g~~~~VidVN~fPg~~g~~ 304 (327)
. ...+..++ ..++++++|.++.++||. .++++|++.+++ .+||+|||.-||-.+..
T Consensus 220 ~------------------~~~p~~l~~~~~~~i~~~a~~~~~~l~~~G~~~ie~~~~~~---~~~viEinpR~~~~~~~ 278 (380)
T TIGR01142 220 E------------------SWQPQEMSEKALEEAQRIAKRITDALGGYGLFGVELFVKGD---EVIFSEVSPRPHDTGMV 278 (380)
T ss_pred E------------------EECCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECC---cEEEEEeecCCCCCceE
Confidence 0 00011121 245788999999999998 578899999743 38999999999976554
No 28
>KOG1057 consensus Arp2/3 complex-interacting protein VIP1/Asp1, involved in regulation of actin cytoskeleton [Cytoskeleton]
Probab=99.72 E-value=1.5e-16 Score=160.23 Aligned_cols=259 Identities=20% Similarity=0.279 Sum_probs=181.2
Q ss_pred CceEEEEEeCCccccccchhHHHHHHHhCC-CeEEEeC----CCCCccccCCccEEEEccCchhHHHHHHHHHHhCCCCc
Q 037279 8 QRFRIGYALAPKKGQSLIQPSLLTKASERG-IDLIPID----PIKPLVEQGPFDCIVHKLYGPDWTRQLQQFSSQNPNVP 82 (327)
Q Consensus 8 ~~~~vG~~~~~~k~~~~~~~~l~~~~~~~g-i~~~~ld----~~~~l~~q~~~Dvilhk~~~~~~~~~l~~~~~~~p~v~ 82 (327)
...+||+|...+|..+=..+.+++..-..+ ++++..- ++.|++.+.-.|++|--.+...-....++|.+.... .
T Consensus 39 r~i~vGICaM~kK~~SKPm~~il~rli~f~~~~~vvf~e~viL~EpVENWP~CdcLIsFhSsGFPLdKAiaY~kLRnP-F 117 (1018)
T KOG1057|consen 39 RQIVVGICAMAKKSKSKPMKEILERLILFKYITVVVFEEEVILREPVENWPLCDCLISFHSKGFPLDKAVAYAKLRNP-F 117 (1018)
T ss_pred cceEEEEeechhhhccChHHHHHHHHHhcceeEEEEeccceeeccccccCcccceEEEeccCCCChHHHHHHHHhcCC-e
Confidence 346999999999855544444444333333 3333332 345666676679998776666557788899876643 4
Q ss_pred ccCcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCc--cc-hhHHH---------hccCCCcEEEeeccCCC
Q 037279 83 IIDSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEM--KS-LTSIE---------DLKLTFPVIAKPLVADG 150 (327)
Q Consensus 83 Vid~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~--~~-~~~~~---------~~~l~~P~VvKP~~~~G 150 (327)
|||.+.-+..+.||-..++.|+. .||++|+..++.+. .. ....+ .+-..-|+|-||+.|
T Consensus 118 viNdL~mQyll~DRR~Vy~iLe~-------~gI~~PRya~~nr~~pn~~~~~lie~eD~vEVnGevf~KPFVEKPVs~-- 188 (1018)
T KOG1057|consen 118 VINDLDMQYLLQDRREVYSILEA-------EGIPLPRYAILNRDPPNPKLCNLIEGEDHVEVNGEVFQKPFVEKPVSA-- 188 (1018)
T ss_pred eeccccHHHHHHHHHHHHHHHHH-------cCCCCceeEeecCCCCChHHhhhhcCCCeEEEcceeccCCcccCCCCc--
Confidence 79999999999999999999998 79999999999862 11 11111 244677999999997
Q ss_pred CccceeeEEEeChhh-------hccC---------------CCceEEEeccCCCCeEEEEEEECCEEE-EEEeccCCCch
Q 037279 151 SVKSHQMYLIFDSQG-------LESM---------------TAPFVLQEFVNHGGFIFKVYVAGMNVK-CVKRKSLPDIS 207 (327)
Q Consensus 151 s~~sh~m~lv~~~~~-------l~~l---------------~~p~vvQefI~h~g~d~KV~ViG~~v~-~~~R~S~~~~~ 207 (327)
+-|.++|.+--+. ++.+ ..-++.+||++.+|.|.|||.||..+. +-.|+|. -+.
T Consensus 189 --EDHNIYIYYPsSaGGGsqrLFRKIgnRSS~y~P~~~vRkeGSyIYEeFMptdgtDVKvYTVGp~YaHAEaRKSP-vvD 265 (1018)
T KOG1057|consen 189 --EDHNIYIYYPSSAGGGSQRLFRKIGNRSSEYHPDSSVRKEGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSP-VVD 265 (1018)
T ss_pred --ccccEEEEecCCCCccHHHHHHHhcccccccCCccccccccceehhhhcCCCCccceEEeeCcchhhhhhccCc-ccc
Confidence 7899999887622 1221 135999999999999999999999985 4568884 221
Q ss_pred hhhhhhcCCccccccccccccCCcccccCCCCCCCCCccccccCCCCcHHHHHHHHHHHHHHhCCcEeEEEEEEeCCCCC
Q 037279 208 EEKLKSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVEMPSQSFLCELARGMREALGLNLFNFDVMRDARDSN 287 (327)
Q Consensus 208 ~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~~~lGl~l~G~Dvi~~~~~g~ 287 (327)
|.. ..+ .+ |+.+. .++. ..+.-+.+|.+++-||+..++|||++..+ |.
T Consensus 266 -GkV---------------~Rn----s~-------GKEvR-Ypv~--Ls~~EK~iA~KVciAF~Q~VCGFDLLRa~--G~ 313 (1018)
T KOG1057|consen 266 -GKV---------------ERN----SD-------GKEVR-YPVI--LNSSEKQIARKVCIAFKQTVCGFDLLRAN--GK 313 (1018)
T ss_pred -cee---------------eec----CC-------Cceee-ceee--cChhhHHHHhHHHhhccccccchHHhhcC--Cc
Confidence 111 001 01 11000 1111 23445889999999999999999999985 43
Q ss_pred cEEEEEEcCCCCCCCCCChHHHHHH
Q 037279 288 RYLIIDVNYFPGYAKMPGYESIMTD 312 (327)
Q Consensus 288 ~~~VidVN~fPg~~g~~~~~~~l~~ 312 (327)
-||+|||.|.-.|+...++..-+.
T Consensus 314 -SYVcDVNGfSFVKns~kYYDd~Ak 337 (1018)
T KOG1057|consen 314 -SYVCDVNGFSFVKNSNKYYDDCAK 337 (1018)
T ss_pred -eEEEeccceeeeecchhhhHHHHH
Confidence 789999999999988877754433
No 29
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=99.71 E-value=2.3e-15 Score=145.32 Aligned_cols=227 Identities=20% Similarity=0.279 Sum_probs=150.6
Q ss_pred hhHHHHHHHhCCCeEEEeCCCCC--c---ccc----------------CCccEEEEccCchhHHHHHHHHHHhCCCCccc
Q 037279 26 QPSLLTKASERGIDLIPIDPIKP--L---VEQ----------------GPFDCIVHKLYGPDWTRQLQQFSSQNPNVPII 84 (327)
Q Consensus 26 ~~~l~~~~~~~gi~~~~ld~~~~--l---~~q----------------~~~Dvilhk~~~~~~~~~l~~~~~~~p~v~Vi 84 (327)
...|+.+|+++|++++.+|.+.. - .++ ...|++..-.... ....+..+ ++ -|+++.
T Consensus 11 ~~~l~~aa~~lG~~v~~~d~~~~~p~~~~ad~~~~~~~~d~~~i~~~a~~~dvit~e~e~i-~~~~l~~l-~~-~g~~~~ 87 (352)
T TIGR01161 11 GRMLALAARPLGIKVHVLDPDANSPAVQVADHVVLAPFFDPAAIRELAESCDVITFEFEHV-DVEALEKL-EA-RGVKLF 87 (352)
T ss_pred HHHHHHHHHHcCCEEEEECCCCCCChhHhCceeEeCCCCCHHHHHHHHhhCCEEEeCcCcC-CHHHHHHH-Hh-CCCeEC
Confidence 34578899999999999997641 1 110 0123332111000 01122332 33 257788
Q ss_pred CcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEEEeeccCCCCccceeeEEEeChh
Q 037279 85 DSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKPLVADGSVKSHQMYLIFDSQ 164 (327)
Q Consensus 85 d~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~~~~ 164 (327)
.++++++.++||..+-++|.+ .|||+|++..+.+.+++.+. ...++||+|+||..++ + +|.++.++.+.+
T Consensus 88 p~~~~~~~~~dK~~~k~~l~~-------~gip~p~~~~~~~~~~~~~~-~~~~g~P~vvKp~~~g-~-~g~Gv~~v~~~~ 157 (352)
T TIGR01161 88 PSPDALAIIQDRLTQKQFLQK-------LGLPVPPFLVIKDEEELDAA-LQELGFPVVLKARTGG-Y-DGRGQYRIRNEA 157 (352)
T ss_pred CCHHHHHHhcCHHHHHHHHHH-------cCCCCCCccEeCCHHHHHHH-HHHcCCCEEEEeCCCC-C-CCCCEEEECCHH
Confidence 999999999999999999998 69999999999987766543 3568999999999862 2 468999999998
Q ss_pred hhccC-----CCceEEEeccCCCCeEEEEEEEC---CEEEEEEeccCCCchhhhhhhcCCccccccccccccCCcccccC
Q 037279 165 GLESM-----TAPFVLQEFVNHGGFIFKVYVAG---MNVKCVKRKSLPDISEEKLKSLKGFLPFSRISNLIDNDKKVHDD 236 (327)
Q Consensus 165 ~l~~l-----~~p~vvQefI~h~g~d~KV~ViG---~~v~~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~ 236 (327)
++... ..++++||||+. ++.+.|.++. +++.... ...+.. ..|....+
T Consensus 158 el~~a~~~~~~~~~lvEe~I~~-~~E~sv~~~~~~~G~~~~~~--~~~~~~------~~g~~~~~--------------- 213 (352)
T TIGR01161 158 DLPQAAKELGDRECIVEEFVPF-ERELSVIVARSADGETAFYP--VVENIH------QDGILRYV--------------- 213 (352)
T ss_pred HHHHHHHhcCCCcEEEEecCCC-CeEEEEEEEEcCCCCEEEEC--CcccEE------eCCEEEEE---------------
Confidence 87532 248999999973 6888888763 3332210 000100 00110000
Q ss_pred CCCCCCCCccccccCCCC--cHHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCcEEEEEEcCCCCCCC
Q 037279 237 GKKNSQGDEVDLESVEMP--SQSFLCELARGMREALGLN-LFNFDVMRDARDSNRYLIIDVNYFPGYAK 302 (327)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~--~~~~l~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~VidVN~fPg~~g 302 (327)
..+...+ ..++++++|.++.++||+. ++++|++.+.+ | .+||+|||.-|+=.|
T Consensus 214 -----------~~p~~~~~~~~~~~~~~a~~i~~~l~~~G~~~ve~~~~~d-g-~~~v~EinpR~~~sg 269 (352)
T TIGR01161 214 -----------VAPAAVPDAIQARAEEIARRLMEELGYVGVLAVEMFVLPD-G-RLLINELAPRVHNSG 269 (352)
T ss_pred -----------ECCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeCC-C-cEEEEEecCCCCCcC
Confidence 0011122 2467899999999999985 88899999753 5 389999999998544
No 30
>PRK06849 hypothetical protein; Provisional
Probab=99.71 E-value=2.9e-15 Score=146.49 Aligned_cols=222 Identities=15% Similarity=0.199 Sum_probs=148.7
Q ss_pred HHHHHHHhCCCeEEEeCCCCC-cc------------------------------ccCCccEEEEccCchhHHHHHHHHHH
Q 037279 28 SLLTKASERGIDLIPIDPIKP-LV------------------------------EQGPFDCIVHKLYGPDWTRQLQQFSS 76 (327)
Q Consensus 28 ~l~~~~~~~gi~~~~ld~~~~-l~------------------------------~q~~~Dvilhk~~~~~~~~~l~~~~~ 76 (327)
.+++.+.+.|++++.+|.... +. ....+|++|+=..+....+...+.+.
T Consensus 19 ~iar~l~~~G~~Vi~~d~~~~~~~~~s~~~d~~~~~p~p~~d~~~~~~~L~~i~~~~~id~vIP~~e~~~~~a~~~~~l~ 98 (389)
T PRK06849 19 ELARLFHNAGHTVILADSLKYPLSRFSRAVDGFYTIPSPRWDPDAYIQALLSIVQRENIDLLIPTCEEVFYLSHAKEELS 98 (389)
T ss_pred HHHHHHHHCCCEEEEEeCCchHHHHHHHhhhheEEeCCCCCCHHHHHHHHHHHHHHcCCCEEEECChHHHhHHhhhhhhc
Confidence 567888888999998886631 10 01245777765532222222222222
Q ss_pred hCCCCcccCcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEEEeeccCCCCcccee
Q 037279 77 QNPNVPIIDSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKPLVADGSVKSHQ 156 (327)
Q Consensus 77 ~~p~v~Vid~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~VvKP~~~~Gs~~sh~ 156 (327)
.+- .....++++++.++||..+.+++++ .||++|+|+.+.+.+++.+......+||+|+||..|+| +++
T Consensus 99 ~~~-~v~~~~~~~~~~~~DK~~~~~~~~~-------~GipvP~t~~v~~~~~l~~~~~~~~~~P~vlKP~~~~~---~~~ 167 (389)
T PRK06849 99 AYC-EVLHFDFELLLLLHNKWEFAEQARS-------LGLSVPKTYLITDPEAIRNFMFKTPHTPYVLKPIYSRF---VRR 167 (389)
T ss_pred CCc-EEEcCCHHHHHHhhCHHHHHHHHHH-------cCCCCCCEEEeCCHHHHHHHhhcCCCCcEEEEeCcccC---CCe
Confidence 222 2346789999999999999999998 59999999999987776553333348999999999864 467
Q ss_pred eEEEeChhhhccC----CCceEEEeccCCCCeEEEEEEECCEEEEE-EeccCCCchhhhhhhcCCccccccccccccCCc
Q 037279 157 MYLIFDSQGLESM----TAPFVLQEFVNHGGFIFKVYVAGMNVKCV-KRKSLPDISEEKLKSLKGFLPFSRISNLIDNDK 231 (327)
Q Consensus 157 m~lv~~~~~l~~l----~~p~vvQefI~h~g~d~KV~ViG~~v~~~-~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~ 231 (327)
+.++.+.+.+..+ ..|+++||||+-.....-.++.++++.+. .+.. ....+ .
T Consensus 168 v~~~~~~~~l~~~~~~~~~~~ivQe~I~G~e~~~~~~~~~G~v~~~~~~~~--~~~~~----------------~----- 224 (389)
T PRK06849 168 VDLLPKEAALKELPISKDNPWVMQEFIQGKEYCSYSIVRSGELRAHSCYKP--EYCAG----------------S----- 224 (389)
T ss_pred EEEecCHHHhcccccCCCCCeEEEEEecCCeEEEEEEEECCEEEEEEEeec--cccCC----------------C-----
Confidence 8888888777655 25899999997544445667778887542 2211 10000 0
Q ss_pred ccccCCCCCCCCCccccccCCCCcHHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCcEEEEEEcCCCC
Q 037279 232 KVHDDGKKNSQGDEVDLESVEMPSQSFLCELARGMREALGLN-LFNFDVMRDARDSNRYLIIDVNYFPG 299 (327)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~VidVN~fPg 299 (327)
+..+..... ..+++.+++.++.++||++ .++||++.+. +|. +|+||||.=++
T Consensus 225 -----------~~~~~~~~~---~~~~l~~~~~~~~~~l~~~G~~~~df~~~~-~g~-~~~iEiNpR~~ 277 (389)
T PRK06849 225 -----------GAQIAFQPI---NHPRIEEFVTHFVKELNYTGQISFDFIETE-NGD-AYPIECNPRTT 277 (389)
T ss_pred -----------CceeEeEEC---CcHHHHHHHHHHHHhcCceeEEEEEEEECC-CCC-EEEEEecCCCC
Confidence 000000111 2468999999999999998 7889999874 564 99999996655
No 31
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=99.71 E-value=1.3e-15 Score=148.39 Aligned_cols=237 Identities=20% Similarity=0.256 Sum_probs=157.7
Q ss_pred EEEEEeCCccccccchhHHHHHHHhCCCeEEEeCCCCCccc-c--------------------CCccEEEEccCchhHHH
Q 037279 11 RIGYALAPKKGQSLIQPSLLTKASERGIDLIPIDPIKPLVE-Q--------------------GPFDCIVHKLYGPDWTR 69 (327)
Q Consensus 11 ~vG~~~~~~k~~~~~~~~l~~~~~~~gi~~~~ld~~~~l~~-q--------------------~~~Dvilhk~~~~~~~~ 69 (327)
+||+.-.- . ....|..+++++|+++..+|++..-.. + ...|++..-.... ...
T Consensus 4 ~igilG~G----q-l~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~e~e~i-~~~ 77 (372)
T PRK06019 4 TIGIIGGG----Q-LGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITYEFENV-PAE 77 (372)
T ss_pred EEEEECCC----H-HHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEeCcCCC-CHH
Confidence 45665552 1 234577889999999999998642110 0 0234443221111 112
Q ss_pred HHHHHHHhCCCCcccCcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEEEeeccCC
Q 037279 70 QLQQFSSQNPNVPIIDSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKPLVAD 149 (327)
Q Consensus 70 ~l~~~~~~~p~v~Vid~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~VvKP~~~~ 149 (327)
.+ +++++. ..+..+++++.++.||..+-++|.+ .|||+|++..+.+.+++.+. ...++||+|+||..+
T Consensus 78 ~l-~~l~~~--~~~~p~~~~~~~~~dK~~~k~~l~~-------~Gip~p~~~~v~s~~~l~~~-~~~~g~P~vlKp~~~- 145 (372)
T PRK06019 78 AL-DALAAR--VPVPPGPDALAIAQDRLTEKQFLDK-------LGIPVAPFAVVDSAEDLEAA-LADLGLPAVLKTRRG- 145 (372)
T ss_pred HH-HHHhcC--CeeCcCHHHHHHhcCHHHHHHHHHH-------CCCCCCCceEeCCHHHHHHH-HHHcCCcEEEEeCCC-
Confidence 22 334444 4678999999999999999999998 69999999999987776543 356899999999985
Q ss_pred CCccceeeEEEeChhhhccC-----CCceEEEeccCCCCeEEEEEEECC---EEEEEEeccCCCchhhhhhhcCCccccc
Q 037279 150 GSVKSHQMYLIFDSQGLESM-----TAPFVLQEFVNHGGFIFKVYVAGM---NVKCVKRKSLPDISEEKLKSLKGFLPFS 221 (327)
Q Consensus 150 Gs~~sh~m~lv~~~~~l~~l-----~~p~vvQefI~h~g~d~KV~ViG~---~v~~~~R~S~~~~~~~~~~~~~g~~~f~ 221 (327)
|+ +|+++.++.+.++|... ..++++||||+. ++.+.|.++.+ ++.. +-. ..+... .|...+.
T Consensus 146 g~-~g~Gv~~v~~~~el~~a~~~~~~~~~ivEe~I~~-~~E~sv~~~~~~~G~~~~-~p~-~e~~~~------~gi~~~~ 215 (372)
T PRK06019 146 GY-DGKGQWVIRSAEDLEAAWALLGSVPCILEEFVPF-EREVSVIVARGRDGEVVF-YPL-VENVHR------NGILRTS 215 (372)
T ss_pred Cc-CCCCeEEECCHHHHHHHHHhcCCCCEEEEecCCC-CeEEEEEEEECCCCCEEE-eCC-cccEEe------CCEEEEE
Confidence 33 57899999999888643 358999999973 68888887754 2321 111 111110 0111110
Q ss_pred cccccccCCcccccCCCCCCCCCccccccCCCC--cHHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCcEEEEEEcCCC
Q 037279 222 RISNLIDNDKKVHDDGKKNSQGDEVDLESVEMP--SQSFLCELARGMREALGLN-LFNFDVMRDARDSNRYLIIDVNYFP 298 (327)
Q Consensus 222 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~VidVN~fP 298 (327)
..+...+ ..++++++|.++.++||+. ++++|++.+. +| .+||+|+|.-|
T Consensus 216 --------------------------~~pa~~~~~~~~~~~~~a~~i~~~L~~~G~~~vEff~~~-dg-~~~v~EinpR~ 267 (372)
T PRK06019 216 --------------------------IAPARISAELQAQAEEIASRIAEELDYVGVLAVEFFVTG-DG-ELLVNEIAPRP 267 (372)
T ss_pred --------------------------ECCCCCCHHHHHHHHHHHHHHHHHcCccceeEEEEEEcC-CC-eEEEEEecCCc
Confidence 0011111 2567899999999999986 7789999974 35 48999999999
Q ss_pred CCCCC
Q 037279 299 GYAKM 303 (327)
Q Consensus 299 g~~g~ 303 (327)
+-.|.
T Consensus 268 ~~sg~ 272 (372)
T PRK06019 268 HNSGH 272 (372)
T ss_pred cCccc
Confidence 86543
No 32
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=99.70 E-value=3.1e-16 Score=136.17 Aligned_cols=165 Identities=24% Similarity=0.397 Sum_probs=106.9
Q ss_pred HhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEEEeeccCCCCccceeeEEEeChhhhccC--
Q 037279 92 RLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKPLVADGSVKSHQMYLIFDSQGLESM-- 169 (327)
Q Consensus 92 ~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~~~~~l~~l-- 169 (327)
+|.||..|.+++.+ .||++|+++.+.+.+++.+. ...++||+|+||..|.| |.++.++.++++|...
T Consensus 1 ~~~dK~~~~~~~~~-------~gv~~P~~~~~~~~~~~~~~-~~~~~~p~vvKp~~g~g---s~gv~~~~~~~~l~~~~~ 69 (184)
T PF13535_consen 1 RCNDKYRMRELLKK-------AGVPVPKTRIVDSEEELRAF-AEDLGFPFVVKPVDGSG---SRGVFIVHSPEELEAALA 69 (184)
T ss_dssp -TCCHHHHHHHHHH-------HTS----EEEECSHHHHHHH-HHHSSSSEEEEESS-ST---TTT-EEESSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH-------cCcCCCCEEEECCHHHHHHH-HHHcCCCEEEEcCcccc---CCCEEEeCCHHHHHHHHH
Confidence 47899999999998 59999999999987777654 45677999999999854 5899999999998644
Q ss_pred ---------CCceEEEeccCCCCeEEEEEEECCEEEE--EEeccCCCchhhhhhhcCCccccccccccccCCcccccCCC
Q 037279 170 ---------TAPFVLQEFVNHGGFIFKVYVAGMNVKC--VKRKSLPDISEEKLKSLKGFLPFSRISNLIDNDKKVHDDGK 238 (327)
Q Consensus 170 ---------~~p~vvQefI~h~g~d~KV~ViG~~v~~--~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~ 238 (327)
..++++||||+.....+.+++.++++++ +.+... ... . .+.. .... .
T Consensus 70 ~~~~~~~~~~~~~ivqe~i~g~e~~~~~~~~~G~~~~~~~~~~~~-~~~--------~--~~~~--~~~~-----~---- 127 (184)
T PF13535_consen 70 EIREDSPLGNGPVIVQEYIPGDEYSVDGVVDDGEVVFAGISRYVR-QSP--------G--HFSG--GVPT-----G---- 127 (184)
T ss_dssp HHHHHHS-HSSSEEEEE---SEEEEEEEEEETTEEEEEEEEEEEE-EET--------C--CCSS--SEEE-----E----
T ss_pred HHHHhcccCCccEEEEEeeeeeeEEEEEEEEcceEEEEEEEEEec-ccc--------c--cccc--ceee-----e----
Confidence 2479999999854566777788888854 233221 000 0 0000 0000 0
Q ss_pred CCCCCCccccccCCCCcHHHHHHHHHHHHHHhCC--cEeEEEEEEeCCCCCcEEEEEEcCCCC
Q 037279 239 KNSQGDEVDLESVEMPSQSFLCELARGMREALGL--NLFNFDVMRDARDSNRYLIIDVNYFPG 299 (327)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~l~~lA~~~~~~lGl--~l~G~Dvi~~~~~g~~~~VidVN~fPg 299 (327)
.....+.+..+.+++++.++.+++|+ .++++|++.+.+ | .++++|||.-+|
T Consensus 128 --------~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~id~~~~~~-g-~~~~iEiN~R~~ 180 (184)
T PF13535_consen 128 --------YSVPSEPPLPEELRDLARKLLRALGYRNGFFHIDFIVDPD-G-ELYFIEINPRFG 180 (184)
T ss_dssp --------EEES--CEHHHHHHHHHHHHHHHHT--SEEEEEEEEEETC-C-EEEEEEEESS--
T ss_pred --------eecccccccHHHHHHHHHHHHHHcCCceEEEEEEEEEeCC-C-CEEEEEECccCC
Confidence 00111112247899999999999998 789999999975 5 489999998765
No 33
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=99.69 E-value=2.1e-15 Score=143.53 Aligned_cols=218 Identities=19% Similarity=0.241 Sum_probs=144.5
Q ss_pred HHHHHHHhC--CCeEEEeCCCCCc-----cc----------------------cCCccEEEEccCch-hHHHHHHHHHHh
Q 037279 28 SLLTKASER--GIDLIPIDPIKPL-----VE----------------------QGPFDCIVHKLYGP-DWTRQLQQFSSQ 77 (327)
Q Consensus 28 ~l~~~~~~~--gi~~~~ld~~~~l-----~~----------------------q~~~Dvilhk~~~~-~~~~~l~~~~~~ 77 (327)
.+++.+++. |++++.+|.+..- .+ .-.+|+++.-.-.. .+.+.+.+.+..
T Consensus 14 ~~~~~l~~~~~g~~vi~~d~~~~~~~~~~~d~~~~~p~~~~~~~~~~l~~~~~~~~id~ii~~~d~~~~~~a~~~~~l~~ 93 (326)
T PRK12767 14 QLVKALKKSLLKGRVIGADISELAPALYFADKFYVVPKVTDPNYIDRLLDICKKEKIDLLIPLIDPELPLLAQNRDRFEE 93 (326)
T ss_pred HHHHHHHHhccCCEEEEECCCCcchhhHhccCcEecCCCCChhHHHHHHHHHHHhCCCEEEECCcHHHHHHHHHHHHHHH
Confidence 456777777 5999998866210 00 01345655532111 122223333333
Q ss_pred CCCC-cccCcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHH-hccCCCcEEEeeccCCCCccce
Q 037279 78 NPNV-PIIDSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIE-DLKLTFPVIAKPLVADGSVKSH 155 (327)
Q Consensus 78 ~p~v-~Vid~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~-~~~l~~P~VvKP~~~~Gs~~sh 155 (327)
+ |+ .+.++++++..+.||..|.+.|.+ .|+|+|+++.+.+.+++.+.. ...++||+|+||..|. .|.
T Consensus 94 ~-g~~~~~~~~~~~~~~~dK~~~~~~l~~-------~gip~p~~~~~~~~~~~~~~~~~~~~~~P~viKP~~g~---~s~ 162 (326)
T PRK12767 94 I-GVKVLVSSKEVIEICNDKWLTYEFLKE-------NGIPTPKSYLPESLEDFKAALAKGELQFPLFVKPRDGS---ASI 162 (326)
T ss_pred c-CcEEEeCCHHHHHHHhcHHHHHHHHHH-------cCCCCCCEEcccCHHHHHhhhhcccCCCCEEEEeCCCC---Ccc
Confidence 3 55 467999999999999999999998 599999999998876665432 4578999999998875 458
Q ss_pred eeEEEeChhhhccC---CCceEEEeccCCCCeEEEEEEE---CCEEEE-EEeccCCCchhhhhhhcCCcccccccccccc
Q 037279 156 QMYLIFDSQGLESM---TAPFVLQEFVNHGGFIFKVYVA---GMNVKC-VKRKSLPDISEEKLKSLKGFLPFSRISNLID 228 (327)
Q Consensus 156 ~m~lv~~~~~l~~l---~~p~vvQefI~h~g~d~KV~Vi---G~~v~~-~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~ 228 (327)
++.++.+.+++... ..++++|||| .|..+.+-++ ++++++ ..+..+.. .. | .
T Consensus 163 gv~~v~~~~el~~~~~~~~~~lvqeyi--~G~e~~v~~~~~~~G~~~~~~~~~~~~~-~~-------g--------~--- 221 (326)
T PRK12767 163 GVFKVNDKEELEFLLEYVPNLIIQEFI--EGQEYTVDVLCDLNGEVISIVPRKRIEV-RA-------G--------E--- 221 (326)
T ss_pred CeEEeCCHHHHHHHHHhCCCeEEEecc--CCceEEEEEEEcCCCCEEEEEEeeeeee-cC-------C--------c---
Confidence 89999999888643 3589999999 4566665444 556644 33332110 00 0 0
Q ss_pred CCcccccCCCCCCCCCccccccCCCCcHHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCcEEEEEEcCCCC
Q 037279 229 NDKKVHDDGKKNSQGDEVDLESVEMPSQSFLCELARGMREALGLN-LFNFDVMRDARDSNRYLIIDVNYFPG 299 (327)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~VidVN~fPg 299 (327)
+ . ... ....+++.+++.++.++||++ +++||++.++ | +++++|+|.-++
T Consensus 222 -~---~------------~~~---~~~~~~i~~~~~~i~~~lg~~G~~~vd~~~~~--g-~~~viEiNpR~~ 271 (326)
T PRK12767 222 -T---S------------KGV---TVKDPELFKLAERLAEALGARGPLNIQCFVTD--G-EPYLFEINPRFG 271 (326)
T ss_pred -e---e------------EEE---EcCCHHHHHHHHHHHHhcCCeeeEEEEEEEEC--C-eEEEEEEeCCCC
Confidence 0 0 000 112467899999999999995 8899999985 3 489999997443
No 34
>PRK07206 hypothetical protein; Provisional
Probab=99.68 E-value=5.6e-15 Score=145.45 Aligned_cols=229 Identities=16% Similarity=0.192 Sum_probs=151.5
Q ss_pred hHHHHHHHhCCCeEEEeCCCCCc----------cc------------------cCCccEEEEccCchhHHHHHHHHHHhC
Q 037279 27 PSLLTKASERGIDLIPIDPIKPL----------VE------------------QGPFDCIVHKLYGPDWTRQLQQFSSQN 78 (327)
Q Consensus 27 ~~l~~~~~~~gi~~~~ld~~~~l----------~~------------------q~~~Dvilhk~~~~~~~~~l~~~~~~~ 78 (327)
..++++++++|++++.++..... .+ ...+|+++.- .+.... +.+.+.++
T Consensus 15 ~~~~~a~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~d~vi~~--~e~~~~-~~a~l~~~ 91 (416)
T PRK07206 15 KFLAPAFKKRGIEPIAVTSSCLLDPYYYASFDTSDFIEVIINGDIDDLVEFLRKLGPEAIIAG--AESGVE-LADRLAEI 91 (416)
T ss_pred HHHHHHHHHcCCeEEEEEcCCCCchhhhcccCcccchhhhcCCCHHHHHHHHHHcCCCEEEEC--CCccHH-HHHHHHHh
Confidence 35778899999999988744211 00 1245666663 222222 23334455
Q ss_pred CCCcccCcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccCCC---cEEEeeccCCCCccce
Q 037279 79 PNVPIIDSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTF---PVIAKPLVADGSVKSH 155 (327)
Q Consensus 79 p~v~Vid~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~---P~VvKP~~~~Gs~~sh 155 (327)
.+.+.-++++++..++||+.|.+.|.+ .||++|++..+.+.+++.+.. ..++| |+|+||..|.| |.
T Consensus 92 l~l~~~~~~~~~~~~~dK~~~r~~l~~-------~gi~~p~~~~~~~~~e~~~~~-~~~g~~~~P~VvKP~~g~g---s~ 160 (416)
T PRK07206 92 LTPQYSNDPALSSARRNKAEMINALAE-------AGLPAARQINTADWEEAEAWL-RENGLIDRPVVIKPLESAG---SD 160 (416)
T ss_pred cCCCcCCChhhHHHhhCHHHHHHHHHH-------cCCCcccEEecCCHHHHHHHH-HhcCCCCCCEEEeCCCCCC---CC
Confidence 677778999999999999999999998 699999999998877665543 45666 99999999754 47
Q ss_pred eeEEEeChhhhccC--------------CCceEEEeccCCCCeEEEE--EEECCEEEE--EEeccCCCchhhhhhhcCCc
Q 037279 156 QMYLIFDSQGLESM--------------TAPFVLQEFVNHGGFIFKV--YVAGMNVKC--VKRKSLPDISEEKLKSLKGF 217 (327)
Q Consensus 156 ~m~lv~~~~~l~~l--------------~~p~vvQefI~h~g~d~KV--~ViG~~v~~--~~R~S~~~~~~~~~~~~~g~ 217 (327)
++.++.+.++|... ..++++||||+ |..|-| ++.+++++. ..+..-.... .+.
T Consensus 161 gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~~lvEe~i~--G~E~sv~~~~~~G~~~~~~~~~~~~~~~~-------~~~ 231 (416)
T PRK07206 161 GVFICPAKGDWKHAFNAILGKANKLGLVNETVLVQEYLI--GTEYVVNFVSLDGNHLVTEIVRYHKTSLN-------SGS 231 (416)
T ss_pred CEEEeCCHHHHHHHHHHHHhccccCCCCCCeEEEEEccc--cEEEEEEEEEECCEEEEEEeEEeeecccC-------CCC
Confidence 99999999887431 24799999996 555554 555677643 2332111110 011
Q ss_pred cccccccccccCCcccccCCCCCCCCCccccccCCCCcHHHHHHHHHHHHHHhCC--cEeEEEEEEeCCCCCcEEEEEEc
Q 037279 218 LPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVEMPSQSFLCELARGMREALGL--NLFNFDVMRDARDSNRYLIIDVN 295 (327)
Q Consensus 218 ~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~~~lGl--~l~G~Dvi~~~~~g~~~~VidVN 295 (327)
..++. + ...+...+..+++.+++.++.++||+ ..+.+|++.+++ | +++||||
T Consensus 232 ~~~~~--------------------~---~~~p~~~~~~~~i~~~~~~~~~alg~~~G~~h~E~~~~~~-g--~~liEin 285 (416)
T PRK07206 232 TVYDY--------------------D---EFLDYSEPEYQELVDYTKQALDALGIKNGPAHAEVMLTAD-G--PRLIEIG 285 (416)
T ss_pred ceecc--------------------c---ccCCccHHHHHHHHHHHHHHHHHcCCccCCceEEEEEcCC-C--CEEEEEC
Confidence 00000 0 00011112356788999999999998 478899999753 3 6899999
Q ss_pred CCCCCCCCC
Q 037279 296 YFPGYAKMP 304 (327)
Q Consensus 296 ~fPg~~g~~ 304 (327)
.-||=...+
T Consensus 286 ~R~~G~~~~ 294 (416)
T PRK07206 286 ARLDGGLHP 294 (416)
T ss_pred CccCCCCcc
Confidence 998844444
No 35
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=99.67 E-value=8e-15 Score=139.62 Aligned_cols=247 Identities=19% Similarity=0.230 Sum_probs=169.9
Q ss_pred hhHHHHHHHhCCCeEEEeCCCCCcc---cc-------CCccEEEEccCchhH-HHHHHHHHHhCCCC-cccCcHHHHHHh
Q 037279 26 QPSLLTKASERGIDLIPIDPIKPLV---EQ-------GPFDCIVHKLYGPDW-TRQLQQFSSQNPNV-PIIDSPDSIERL 93 (327)
Q Consensus 26 ~~~l~~~~~~~gi~~~~ld~~~~l~---~q-------~~~Dvilhk~~~~~~-~~~l~~~~~~~p~v-~Vid~~~ai~~~ 93 (327)
-..++++.+..|.+...+|...... .. ..+|++++.+..... ...+|.+++.. ++ .|.-|..+-..+
T Consensus 23 a~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvfp~lhG~~gEDg~iqg~le~~-giPyvg~gv~~Sa~~ 101 (317)
T COG1181 23 AKAVLRALKGFGYDVTPVDITEAGLWMLDKEVTKRVLQKADVVFPVLHGPYGEDGTIQGLLELL-GIPYVGKGVLASAGA 101 (317)
T ss_pred HHHHHHHHhhcCceeEEEeccccceEEeccccchhhcccCCEEEEeCCCCCCCCchHHHHHHHh-CCCEecCchhhhhhc
Confidence 3447777888999999999876321 11 367888877754311 23455555443 43 466789999999
Q ss_pred cCHHHHHHHHHhcccccCCCCcCCCeEEEEcCc---cchhHHHhccCCCcEEEeeccCCCCccceeeEEEeChhhhcc--
Q 037279 94 HNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEM---KSLTSIEDLKLTFPVIAKPLVADGSVKSHQMYLIFDSQGLES-- 168 (327)
Q Consensus 94 ~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~---~~~~~~~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~~~~~l~~-- 168 (327)
+||..+-.++.. .+++++..+++... +.+.+....+++||++|||... || |-++..+++.+++..
T Consensus 102 mdk~~~K~~~~~-------~g~~~a~~~~~~~~~~~~~~~e~~~~~l~~p~~Vkp~~~-gS--Svg~~~v~~~~d~~~~~ 171 (317)
T COG1181 102 MDKIVTKRLFKA-------EGLPVAPYVALTRDEYSSVIVEEVEEGLGFPLFVKPARE-GS--SVGRSPVNVEGDLQSAL 171 (317)
T ss_pred ccHHHHHHHHHH-------CCCCccceeeeecccchhHHHHHhhcccCCCEEEEcCCc-cc--eeeEEEeeeccchHHHH
Confidence 999999888877 59999999998753 2222334789999999999985 45 678888888877763
Q ss_pred -----CCCceEEEeccCCCCeEEEEEEECCEEEEEEeccCCCchhhhhhhc-CCccccccccccccCCcccccCCCCCCC
Q 037279 169 -----MTAPFVLQEFVNHGGFIFKVYVAGMNVKCVKRKSLPDISEEKLKSL-KGFLPFSRISNLIDNDKKVHDDGKKNSQ 242 (327)
Q Consensus 169 -----l~~p~vvQefI~h~g~d~KV~ViG~~v~~~~R~S~~~~~~~~~~~~-~g~~~f~~~s~~~~~~~~~~~~~~~~~~ 242 (327)
.+..+++|+|++ |+.+.|-++|+.. ....-++ ++.... ..++.|.+ ++.+..
T Consensus 172 e~a~~~d~~vl~e~~~~--~rei~v~vl~~~~-~~~~l~~-----~eI~~~~~~fydye~--Ky~~~g------------ 229 (317)
T COG1181 172 ELAFKYDRDVLREQGIT--GREIEVGVLGNDY-EEQALPL-----GEIPPKGEEFYDYEA--KYLSTG------------ 229 (317)
T ss_pred HHHHHhCCceeeccCCC--cceEEEEecCCcc-cceecCc-----eEEecCCCeEEeeec--cccCCC------------
Confidence 357899999997 9999999999966 2111111 111111 23455553 332211
Q ss_pred CCccccccCCCC--cHHHHHHHHHHHHHHhC-CcEeEEEEEEeCCCCCcEEEEEEcCCCCCCCCCChH
Q 037279 243 GDEVDLESVEMP--SQSFLCELARGMREALG-LNLFNFDVMRDARDSNRYLIIDVNYFPGYAKMPGYE 307 (327)
Q Consensus 243 ~~~~~~~~~~~~--~~~~l~~lA~~~~~~lG-l~l~G~Dvi~~~~~g~~~~VidVN~fPg~~g~~~~~ 307 (327)
|+. ...+..++ ..++++++|.++.++|| ..+.++|++.++.+|+ +|++|||..|||....-|+
T Consensus 230 g~~-~~~pa~lt~~~~~~i~~lA~~a~~alg~~g~~rvDf~~~~~~g~-~~l~EvNt~PG~t~~sl~P 295 (317)
T COG1181 230 GAQ-YDIPAGLTDEIHEEIKELALRAYKALGCLGLARVDFFVDDDEGE-FVLLEVNTNPGMTAMSLFP 295 (317)
T ss_pred Cce-eeCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEEEECCCCC-EEEEEEeCCCCCcccccch
Confidence 110 01111222 25789999999999999 8899999999874554 8999999999988776543
No 36
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=99.67 E-value=1.8e-14 Score=147.60 Aligned_cols=241 Identities=13% Similarity=0.167 Sum_probs=160.9
Q ss_pred CCceEEEEEeCCccccccchhHHHHHHHhCCCeEEEeCCCCCccc-c--------------------CCccEEEEccCch
Q 037279 7 CQRFRIGYALAPKKGQSLIQPSLLTKASERGIDLIPIDPIKPLVE-Q--------------------GPFDCIVHKLYGP 65 (327)
Q Consensus 7 ~~~~~vG~~~~~~k~~~~~~~~l~~~~~~~gi~~~~ld~~~~l~~-q--------------------~~~Dvilhk~~~~ 65 (327)
....+||+...- ..-..++.+|++.|++++.+|.+..-.. + ...|++..-....
T Consensus 20 ~~~k~IgIIGgG-----qlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt~e~e~v 94 (577)
T PLN02948 20 VSETVVGVLGGG-----QLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDVLTVEIEHV 94 (577)
T ss_pred CCCCEEEEECCC-----HHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCEEEEecCCC
Confidence 445688888877 2334577899999999999998642100 0 0134432211111
Q ss_pred hHHHHHHHHHHhCCCCcccCcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEEEee
Q 037279 66 DWTRQLQQFSSQNPNVPIIDSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKP 145 (327)
Q Consensus 66 ~~~~~l~~~~~~~p~v~Vid~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~VvKP 145 (327)
. ...+ +.+..+ ++++..+++++.+++||+.+-++|.+ .|||+|++..+.+.+++.+. ...++||+|+||
T Consensus 95 ~-~~~l-~~le~~-gi~v~ps~~al~i~~DK~~~K~~l~~-------~GIptp~~~~v~~~~el~~~-~~~ig~P~VvKP 163 (577)
T PLN02948 95 D-VDTL-EALEKQ-GVDVQPKSSTIRIIQDKYAQKVHFSK-------HGIPLPEFMEIDDLESAEKA-GDLFGYPLMLKS 163 (577)
T ss_pred C-HHHH-HHHHhc-CCccCCCHHHHHHhcCHHHHHHHHHH-------CCcCCCCeEEeCCHHHHHHH-HHhcCCcEEEEe
Confidence 1 1222 333333 67788999999999999999999998 69999999999887666443 457899999999
Q ss_pred ccCCCCccceeeEEEeChhhhccC-------CCceEEEeccCCCCeEEEEEEECC---EEEEEEeccCCCchhhhhhhcC
Q 037279 146 LVADGSVKSHQMYLIFDSQGLESM-------TAPFVLQEFVNHGGFIFKVYVAGM---NVKCVKRKSLPDISEEKLKSLK 215 (327)
Q Consensus 146 ~~~~Gs~~sh~m~lv~~~~~l~~l-------~~p~vvQefI~h~g~d~KV~ViG~---~v~~~~R~S~~~~~~~~~~~~~ 215 (327)
..+ |+ +|+++.++.++++|... ..++++|+||+. .+.+-|.|+++ ++.+. +..-+... .
T Consensus 164 ~~g-gs-~g~Gv~~v~~~~eL~~a~~~~~~~~~~vlvEefI~~-~~EisV~v~r~~~G~i~~~--p~~E~~~~------~ 232 (577)
T PLN02948 164 RRL-AY-DGRGNAVAKTEEDLSSAVAALGGFERGLYAEKWAPF-VKELAVMVARSRDGSTRCY--PVVETIHK------D 232 (577)
T ss_pred CCC-CC-CCCCeEEECCHHHHHHHHHHhhCCCCcEEEEecCCC-CeEEEEEEEECCCCCEEEe--cCcccEEE------C
Confidence 985 23 57899999999887532 358999999953 48899988853 33221 11101000 0
Q ss_pred CccccccccccccCCcccccCCCCCCCCCccccccCCCC--cHHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCcEEEE
Q 037279 216 GFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVEMP--SQSFLCELARGMREALGLN-LFNFDVMRDARDSNRYLII 292 (327)
Q Consensus 216 g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~Vi 292 (327)
+.+.+ ...+..++ ..++++++|.++.++||.. ++.+|++.+.+ | .+||+
T Consensus 233 ~~~~~--------------------------~~~Pa~l~~~~~~~~~~~A~~~~~aLg~~Gv~~vEffv~~d-G-~v~v~ 284 (577)
T PLN02948 233 NICHV--------------------------VEAPANVPWKVAKLATDVAEKAVGSLEGAGVFGVELFLLKD-G-QILLN 284 (577)
T ss_pred CeeEE--------------------------EEECCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEcCC-C-cEEEE
Confidence 00000 00111222 2568899999999999876 66899999753 5 38999
Q ss_pred EEcCCCCCCC
Q 037279 293 DVNYFPGYAK 302 (327)
Q Consensus 293 dVN~fPg~~g 302 (327)
|||.-||..|
T Consensus 285 EInpRpg~sG 294 (577)
T PLN02948 285 EVAPRPHNSG 294 (577)
T ss_pred EEeCCCCCCC
Confidence 9999999655
No 37
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=99.65 E-value=2e-14 Score=140.49 Aligned_cols=240 Identities=13% Similarity=0.220 Sum_probs=158.2
Q ss_pred CceEEEEEeCCccccccchhHHHHHHHhCCCeEEEeCCCCCc-----c---------c---------cCCccEEEEccCc
Q 037279 8 QRFRIGYALAPKKGQSLIQPSLLTKASERGIDLIPIDPIKPL-----V---------E---------QGPFDCIVHKLYG 64 (327)
Q Consensus 8 ~~~~vG~~~~~~k~~~~~~~~l~~~~~~~gi~~~~ld~~~~l-----~---------~---------q~~~Dvilhk~~~ 64 (327)
.+.+|++.-+-. ....++.+++++|+++..+|.+... . + ...+|+++.-..+
T Consensus 11 ~~~~ilIiG~g~-----~~~~~~~a~~~~G~~v~~~~~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~id~vi~~~e~ 85 (395)
T PRK09288 11 SATRVMLLGSGE-----LGKEVAIEAQRLGVEVIAVDRYANAPAMQVAHRSHVIDMLDGDALRAVIEREKPDYIVPEIEA 85 (395)
T ss_pred CCCEEEEECCCH-----HHHHHHHHHHHCCCEEEEEeCCCCCchHHhhhheEECCCCCHHHHHHHHHHhCCCEEEEeeCc
Confidence 344666664431 3445778899999999999865311 0 0 1146777765433
Q ss_pred hhHHHHHHHHHHhCCCCcccCcHHHHHHhcCHHHHHHHHH-hcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEEE
Q 037279 65 PDWTRQLQQFSSQNPNVPIIDSPDSIERLHNRISMLEVVT-QLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIA 143 (327)
Q Consensus 65 ~~~~~~l~~~~~~~p~v~Vid~~~ai~~~~dR~~~~~~L~-~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~Vv 143 (327)
.. ...+.++ .+. ++++..+++++++++||..+.++|. + .|||+|++..+.+.+++.+. ...++||+|+
T Consensus 86 ~~-~~~~~~l-~~~-g~~~~~~~~a~~~~~dK~~~k~~l~~~-------~gip~p~~~~~~s~~~l~~~-~~~~g~P~Vv 154 (395)
T PRK09288 86 IA-TDALVEL-EKE-GFNVVPTARATRLTMNREGIRRLAAEE-------LGLPTSPYRFADSLEELRAA-VEEIGYPCVV 154 (395)
T ss_pred CC-HHHHHHH-Hhc-CCeeCCCHHHHHHHhCHHHHHHHHHHh-------CCCCCCCceEECCHHHHHHH-HHhcCCCEEE
Confidence 21 2223333 333 7877889999999999999999884 5 59999999999987776553 3568999999
Q ss_pred eeccCCCCccceeeEEEeChhhhccC-----------CCceEEEeccCCCCeEEEEEEECCE---EEEEEeccCCCchhh
Q 037279 144 KPLVADGSVKSHQMYLIFDSQGLESM-----------TAPFVLQEFVNHGGFIFKVYVAGMN---VKCVKRKSLPDISEE 209 (327)
Q Consensus 144 KP~~~~Gs~~sh~m~lv~~~~~l~~l-----------~~p~vvQefI~h~g~d~KV~ViG~~---v~~~~R~S~~~~~~~ 209 (327)
||..|. .|.++.++.+.++|... ..++++||||+. +..+.|.++.+. .+.. ....++.
T Consensus 155 KP~~g~---~s~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEefi~~-~~E~sv~~~~~~~~~~~~~--~~~~~~~-- 226 (395)
T PRK09288 155 KPVMSS---SGKGQSVVRSPEDIEKAWEYAQEGGRGGAGRVIVEEFIDF-DYEITLLTVRAVDGGTHFC--APIGHRQ-- 226 (395)
T ss_pred EeCCCc---CCCCeEEECCHHHHHHHHHHHHhhccccCCCEEEEEecCC-CEEEEEEEEEcCCCCEEEe--cCcccEE--
Confidence 998754 46899999999887532 258999999973 678888877432 2111 1111110
Q ss_pred hhhhcCCccccccccccccCCcccccCCCCCCCCCccccccCCCC--cHHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCC
Q 037279 210 KLKSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVEMP--SQSFLCELARGMREALGLN-LFNFDVMRDARDS 286 (327)
Q Consensus 210 ~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~lA~~~~~~lGl~-l~G~Dvi~~~~~g 286 (327)
..+.+. .. ..+..++ ..++++++|.++.++||.. ++.+|++.+++
T Consensus 227 ----~~~~~~----~~----------------------~~p~~l~~~~~~~i~~~~~~~~~~L~~~G~~~ve~~~~~~-- 274 (395)
T PRK09288 227 ----EDGDYR----ES----------------------WQPQPMSPAALEEAQEIAKKVTDALGGRGLFGVELFVKGD-- 274 (395)
T ss_pred ----ECCEEE----EE----------------------ECCCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeCC--
Confidence 001000 00 0011111 2456789999999999964 66799999753
Q ss_pred CcEEEEEEcCCCCCCCCC
Q 037279 287 NRYLIIDVNYFPGYAKMP 304 (327)
Q Consensus 287 ~~~~VidVN~fPg~~g~~ 304 (327)
++||+|+|.-||-.+..
T Consensus 275 -~~~viEinpR~~~~~~~ 291 (395)
T PRK09288 275 -EVYFSEVSPRPHDTGMV 291 (395)
T ss_pred -eEEEEEecCCCCCCcce
Confidence 38999999999865544
No 38
>PRK08462 biotin carboxylase; Validated
Probab=99.64 E-value=8e-15 Score=145.90 Aligned_cols=226 Identities=19% Similarity=0.218 Sum_probs=146.6
Q ss_pred hhHHHHHHHhCCCeEEEeCC--CC--C----------c---------cc---------cCCccEEEEccCchhHHHHHHH
Q 037279 26 QPSLLTKASERGIDLIPIDP--IK--P----------L---------VE---------QGPFDCIVHKLYGPDWTRQLQQ 73 (327)
Q Consensus 26 ~~~l~~~~~~~gi~~~~ld~--~~--~----------l---------~~---------q~~~Dvilhk~~~~~~~~~l~~ 73 (327)
.-+++++|++.|++.+.++- +. + + .+ ...+|+|++-.....-...+.+
T Consensus 16 ~~~~~~~~~~~G~~~v~~~~~~d~~~~~~~~ad~~~~~~~~~~~~~y~~~~~l~~~~~~~~~D~i~pg~g~lse~~~~a~ 95 (445)
T PRK08462 16 ALRAIRTIQEMGKEAIAIYSTADKDALYLKYADAKICIGGAKSSESYLNIPAIISAAEIFEADAIFPGYGFLSENQNFVE 95 (445)
T ss_pred HHHHHHHHHHcCCCEEEEechhhcCCchhhhCCEEEEeCCCchhcccCCHHHHHHHHHHcCCCEEEECCCccccCHHHHH
Confidence 44788999999999998842 22 1 1 00 1245666665421100122233
Q ss_pred HHHhCCCCcc-cCcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEE--EEcCccchhHHHhccCCCcEEEeeccCCC
Q 037279 74 FSSQNPNVPI-IDSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQV--VVSEMKSLTSIEDLKLTFPVIAKPLVADG 150 (327)
Q Consensus 74 ~~~~~p~v~V-id~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~--~~~~~~~~~~~~~~~l~~P~VvKP~~~~G 150 (327)
..++ -|+++ -.++++++.+.||..|.++|.+ .|||+|++. .+.+.+++.+. ...++||+|+||..|+
T Consensus 96 ~~e~-~Gi~~~g~~~~~~~~~~dK~~~r~~l~~-------~gIp~pp~~~~~~~~~~~~~~~-~~~~g~PvvvKP~~g~- 165 (445)
T PRK08462 96 ICSH-HNIKFIGPSVEVMALMSDKSKAKEVMKR-------AGVPVIPGSDGALKSYEEAKKI-AKEIGYPVILKAAAGG- 165 (445)
T ss_pred HHHH-CCCeEECcCHHHHHHhCCHHHHHHHHHH-------CCCCCCCCcccccCCHHHHHHH-HHHcCCCEEEEeCCCC-
Confidence 3333 47765 4889999999999999999998 699998864 45565554443 4568999999999975
Q ss_pred CccceeeEEEeChhhhccC-------------CCceEEEeccCCCCeEEEEEEECCE---EEEE-Ee-ccCCCchhhhhh
Q 037279 151 SVKSHQMYLIFDSQGLESM-------------TAPFVLQEFVNHGGFIFKVYVAGMN---VKCV-KR-KSLPDISEEKLK 212 (327)
Q Consensus 151 s~~sh~m~lv~~~~~l~~l-------------~~p~vvQefI~h~g~d~KV~ViG~~---v~~~-~R-~S~~~~~~~~~~ 212 (327)
+|++|.++.++++|... +.++++||||+. ++.+.+.++++. ++.. .| .+....
T Consensus 166 --gs~Gv~~v~~~~eL~~~~~~~~~~~~~~~~~~~vlvEe~i~g-~~e~~v~v~~~~~g~~~~~g~~~~~~~~~------ 236 (445)
T PRK08462 166 --GGRGMRVVEDESDLENLYLAAESEALSAFGDGTMYMEKFINN-PRHIEVQILGDKHGNVIHVGERDCSLQRR------ 236 (445)
T ss_pred --CCCCeEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeccCCC-CeEEEEEEEECCCCCEEEEEeccccceec------
Confidence 45899999999888532 246999999964 577888888653 2221 11 111000
Q ss_pred hcCCccccccccccccCCcccccCCCCCCCCCccccccCCCC--cHHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCCcE
Q 037279 213 SLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVEMP--SQSFLCELARGMREALGLNLFN-FDVMRDARDSNRY 289 (327)
Q Consensus 213 ~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~lA~~~~~~lGl~l~G-~Dvi~~~~~g~~~ 289 (327)
. .+.-..+ +. ..++ ..+++.++|.++.++||+.-++ ||++.+.+ | .+
T Consensus 237 ---------~-~~~~~~~-----------------p~-~~l~~~~~~~i~~~a~~~~~alg~~G~~~ve~~~~~~-g-~~ 286 (445)
T PRK08462 237 ---------H-QKLIEES-----------------PA-VVLDEKTRERLHETAIKAAKAIGYEGAGTFEFLLDSN-L-DF 286 (445)
T ss_pred ---------c-cceEEEc-----------------CC-CCCCHHHHHHHHHHHHHHHHHcCCCCcceEEEEEeCC-C-CE
Confidence 0 0000000 00 0111 2467899999999999997444 99999854 3 48
Q ss_pred EEEEEcCCCCC
Q 037279 290 LIIDVNYFPGY 300 (327)
Q Consensus 290 ~VidVN~fPg~ 300 (327)
||+|||.-++-
T Consensus 287 ~viEiNpR~~~ 297 (445)
T PRK08462 287 YFMEMNTRLQV 297 (445)
T ss_pred EEEEEECCcCc
Confidence 99999988864
No 39
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=99.64 E-value=3.5e-14 Score=154.52 Aligned_cols=225 Identities=15% Similarity=0.257 Sum_probs=152.7
Q ss_pred hhHHHHHHHhCCCeEEEeCCCCCc-------cc-----------------cCCccEEEEccCchhHHHHHHHHHHhCCCC
Q 037279 26 QPSLLTKASERGIDLIPIDPIKPL-------VE-----------------QGPFDCIVHKLYGPDWTRQLQQFSSQNPNV 81 (327)
Q Consensus 26 ~~~l~~~~~~~gi~~~~ld~~~~l-------~~-----------------q~~~Dvilhk~~~~~~~~~l~~~~~~~p~v 81 (327)
.-.+++++++.|++++.+|.+-.. .+ .-.+|.++.-..++. ...+...+.+ .|+
T Consensus 577 ~v~~i~al~~~G~~vI~v~~npetvs~d~~~~D~ly~ep~~~e~vl~i~~~e~idgVI~~~gg~~-~~~la~~le~-~Gi 654 (1050)
T TIGR01369 577 CVHAVLALRELGYETIMINYNPETVSTDYDTSDRLYFEPLTFEDVMNIIELEKPEGVIVQFGGQT-PLNLAKALEE-AGV 654 (1050)
T ss_pred HHHHHHHHHhCCCEEEEEecCCccccccccccceEEEecCCHHHHHHHHhhcCCCEEEEccCcHh-HHHHHHHHHH-CCC
Confidence 345789999999999999865211 10 013566665544432 2223333333 378
Q ss_pred ccc-CcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEEEeeccCCCCccceeeEEE
Q 037279 82 PII-DSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKPLVADGSVKSHQMYLI 160 (327)
Q Consensus 82 ~Vi-d~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~VvKP~~~~Gs~~sh~m~lv 160 (327)
+++ ++++++..+.||..+.++|.+ .|||+|++..+.+.+++.+. ...++||+|+||..+. +|++|.++
T Consensus 655 ~i~G~s~~~i~~~~DK~~f~~lL~~-------~GIp~P~~~~v~s~ee~~~~-~~~igyPvIVKP~~~~---Gg~gv~iv 723 (1050)
T TIGR01369 655 PILGTSPESIDRAEDREKFSELLDE-------LGIPQPKWKTATSVEEAVEF-ASEIGYPVLVRPSYVL---GGRAMEIV 723 (1050)
T ss_pred cEECCCHHHHHHHCCHHHHHHHHHH-------CCcCCCCeEEECCHHHHHHH-HHhcCCCEEEEECCCC---CCCCeEEE
Confidence 776 799999999999999999998 59999999999987776553 4578999999999875 45899999
Q ss_pred eChhhhccC---------CCceEEEeccCCC-CeEEEEEEECCEEEE--EEeccCCCchhhhhhhcCCcccccccccccc
Q 037279 161 FDSQGLESM---------TAPFVLQEFVNHG-GFIFKVYVAGMNVKC--VKRKSLPDISEEKLKSLKGFLPFSRISNLID 228 (327)
Q Consensus 161 ~~~~~l~~l---------~~p~vvQefI~h~-g~d~KV~ViG~~v~~--~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~ 228 (327)
+|+++|... ..|+++||||+.+ ...+-+++-|+++++ ....-... |. + +
T Consensus 724 ~~~eeL~~~l~~a~~~s~~~~vlVeefI~~G~E~~Vd~l~d~g~v~i~~i~e~~~~~----------gv---~------s 784 (1050)
T TIGR01369 724 YNEEELRRYLEEAVEVSPEHPVLIDKYLEDAVEVDVDAVSDGEEVLIPGIMEHIEEA----------GV---H------S 784 (1050)
T ss_pred CCHHHHHHHHHHHHHhCCCCCEEEeecCCCCeEEEEEEEEeCCEEEEEEEEEeeccc----------CC---c------C
Confidence 999888532 4689999999742 345556666777754 22211000 00 0 0
Q ss_pred CCcccccCCCCCCCCCccccccC-CCC--cHHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCcEEEEEEcCCCC
Q 037279 229 NDKKVHDDGKKNSQGDEVDLESV-EMP--SQSFLCELARGMREALGLN-LFNFDVMRDARDSNRYLIIDVNYFPG 299 (327)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~l~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~VidVN~fPg 299 (327)
+. . ....+. .++ ..++++++|.++.++||+. ++++|++.++ + .+||||||.-++
T Consensus 785 Gd-------------s-~~~~P~~~l~~~~~~~i~~~a~ki~~aLgi~G~~~vqf~~~~--~-~~yvIEvNpR~s 842 (1050)
T TIGR01369 785 GD-------------S-TCVLPPQTLSAEIVDRIKDIVRKIAKELNVKGLMNIQFAVKD--G-EVYVIEVNPRAS 842 (1050)
T ss_pred CC-------------c-eEEecCCCCCHHHHHHHHHHHHHHHHHCCCcceEEEEEEEEC--C-eEEEEEEeCCCC
Confidence 00 0 000111 111 1357899999999999986 6679999974 3 489999998876
No 40
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.64 E-value=1.9e-14 Score=156.84 Aligned_cols=227 Identities=15% Similarity=0.225 Sum_probs=152.8
Q ss_pred cchhHHHHHHHhCCCeEEEeCCCCCc-------cc-----------------cCCccEEEEccCchhHHHHHHHHHHhCC
Q 037279 24 LIQPSLLTKASERGIDLIPIDPIKPL-------VE-----------------QGPFDCIVHKLYGPDWTRQLQQFSSQNP 79 (327)
Q Consensus 24 ~~~~~l~~~~~~~gi~~~~ld~~~~l-------~~-----------------q~~~Dvilhk~~~~~~~~~l~~~~~~~p 79 (327)
+....++++++++|++.+.+|.+-.. .+ .-..|.++.-+..+... .+...+.+ .
T Consensus 575 y~~v~~i~alk~~G~~vi~v~~npetvs~~~~~aD~~y~e~~~~e~v~~i~~~e~~dgVi~~~g~~~~~-~la~~le~-~ 652 (1066)
T PRK05294 575 YCCVHAVLALREAGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIIEKEKPKGVIVQFGGQTPL-KLAKALEA-A 652 (1066)
T ss_pred hhHHHHHHHHHHCCCEEEEEeCCccccccccchhhheeecCCCHHHHHHHHHHcCCCEEEEEeCchhHH-HHHHHHHH-C
Confidence 33455789999999999999966311 11 01356666655544323 33333333 3
Q ss_pred CCccc-CcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEEEeeccCCCCccceeeE
Q 037279 80 NVPII-DSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKPLVADGSVKSHQMY 158 (327)
Q Consensus 80 ~v~Vi-d~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~VvKP~~~~Gs~~sh~m~ 158 (327)
|++++ +++++++.+.||..+.++|.+ .|||+|++..+.+.+++.+. ...++||+|+||..+. +|.+|.
T Consensus 653 Gi~ilg~s~~ai~~~~DK~~~~~~L~~-------~GIp~P~~~~~~s~ee~~~~-~~~igyPvvVKP~~~~---Gg~Gv~ 721 (1066)
T PRK05294 653 GVPILGTSPDAIDLAEDRERFSKLLEK-------LGIPQPPNGTATSVEEALEV-AEEIGYPVLVRPSYVL---GGRAME 721 (1066)
T ss_pred CCceeCCCHHHHHHhCCHHHHHHHHHH-------cCcCCCCeEEECCHHHHHHH-HHhcCCCeEEEeCCCC---CCCcEE
Confidence 78876 689999999999999999998 59999999999987666543 4678999999998864 458999
Q ss_pred EEeChhhhccC---------CCceEEEeccCCC-CeEEEEEEECCEEEE--EEeccCCCchhhhhhhcCCcccccccccc
Q 037279 159 LIFDSQGLESM---------TAPFVLQEFVNHG-GFIFKVYVAGMNVKC--VKRKSLPDISEEKLKSLKGFLPFSRISNL 226 (327)
Q Consensus 159 lv~~~~~l~~l---------~~p~vvQefI~h~-g~d~KV~ViG~~v~~--~~R~S~~~~~~~~~~~~~g~~~f~~~s~~ 226 (327)
++.|+++|..+ ..|+++||||+.. ...+-+++-|+.+.. ..+.-.+. | .
T Consensus 722 iv~~~eeL~~~~~~a~~~s~~~~vlIEefI~G~~E~sV~~v~dg~~v~i~~i~e~i~~~----------g---------v 782 (1066)
T PRK05294 722 IVYDEEELERYMREAVKVSPDHPVLIDKFLEGAIEVDVDAICDGEDVLIGGIMEHIEEA----------G---------V 782 (1066)
T ss_pred EECCHHHHHHHHHHHHhhCCCCcEEEEecCCCCEEEEEEEEecCCeEEEeeeEEeeeec----------c---------c
Confidence 99999888532 4689999999754 445555554554432 11110000 0 0
Q ss_pred ccCCcccccCCCCCCCCCcccccc-CCCC--cHHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCcEEEEEEcCCCC
Q 037279 227 IDNDKKVHDDGKKNSQGDEVDLES-VEMP--SQSFLCELARGMREALGLN-LFNFDVMRDARDSNRYLIIDVNYFPG 299 (327)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~l~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~VidVN~fPg 299 (327)
.++. . ....+ ..++ ..++++++|.++.++||+. ++++|++.++ + .+||+|||.-|+
T Consensus 783 ~~Gd-------------s-~~~~p~~~l~~~~~~~i~~~a~~i~~aLg~~G~~~vqf~~~~--~-~~yViEiNpR~s 842 (1066)
T PRK05294 783 HSGD-------------S-ACSLPPQTLSEEIIEEIREYTKKLALELNVVGLMNVQFAVKD--D-EVYVIEVNPRAS 842 (1066)
T ss_pred cCCC-------------C-cEEecCCCCCHHHHHHHHHHHHHHHHHcCCeeeEEEEEEEEC--C-eEEEEEEecCCC
Confidence 0000 0 00001 1111 2457899999999999995 7779999974 3 489999998776
No 41
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=99.62 E-value=6.1e-14 Score=140.58 Aligned_cols=225 Identities=12% Similarity=0.181 Sum_probs=148.0
Q ss_pred hhHHHHHHHhCCCeEEEeCC--CC--C---ccc-------------------------cCCccEEEEccC--chhHHHHH
Q 037279 26 QPSLLTKASERGIDLIPIDP--IK--P---LVE-------------------------QGPFDCIVHKLY--GPDWTRQL 71 (327)
Q Consensus 26 ~~~l~~~~~~~gi~~~~ld~--~~--~---l~~-------------------------q~~~Dvilhk~~--~~~~~~~l 71 (327)
.-+++++|++.|++++.+.. +. + +.+ ...+|+|+.-.. .+ .. .+
T Consensus 17 a~~ii~aa~~lG~~~v~~~s~~d~~~~~~~~aD~~~~i~p~~~~~~y~d~~~i~~~a~~~~~daI~pg~g~lsE-~~-~~ 94 (467)
T PRK12833 17 AVRIIRAARELGMRTVAACSDADRDSLAARMADEAVHIGPSHAAKSYLNPAAILAAARQCGADAIHPGYGFLSE-NA-AF 94 (467)
T ss_pred HHHHHHHHHHcCCeEEEEECCCCCCChhHHhCCEEEecCCCCccccccCHHHHHHHHHHhCCCEEEECCCcccc-CH-HH
Confidence 34688999999999998732 21 0 000 013466665321 11 11 12
Q ss_pred HHHHHhCCCCc-ccCcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEE--EEcCccchhHHHhccCCCcEEEeeccC
Q 037279 72 QQFSSQNPNVP-IIDSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQV--VVSEMKSLTSIEDLKLTFPVIAKPLVA 148 (327)
Q Consensus 72 ~~~~~~~p~v~-Vid~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~--~~~~~~~~~~~~~~~l~~P~VvKP~~~ 148 (327)
.+.+.+ .|++ +-.++++++.+.||..+.++|.+ .|||+|++. .+.+.+++.+. ...++||+|+||..|
T Consensus 95 ~~~~e~-~gi~~igps~~ai~~~~DK~~~r~~l~~-------~GIp~~p~~~~~v~~~~e~~~~-~~~igyPvvvKp~~g 165 (467)
T PRK12833 95 AEAVEA-AGLIFVGPDAQTIRTMGDKARARRTARR-------AGVPTVPGSDGVVASLDAALEV-AARIGYPLMIKAAAG 165 (467)
T ss_pred HHHHHH-cCCCccCCCHHHHHHhcCHHHHHHHHHH-------cCCCCCCCcCcCcCCHHHHHHH-HHHhCCCEEEEECCC
Confidence 222223 3665 45688999999999999999998 699998875 66666655443 456899999999997
Q ss_pred CCCccceeeEEEeChhhhccC-------------CCceEEEeccCCCCeEEEEEEECCEE--EE-EEec-cCCCchhhhh
Q 037279 149 DGSVKSHQMYLIFDSQGLESM-------------TAPFVLQEFVNHGGFIFKVYVAGMNV--KC-VKRK-SLPDISEEKL 211 (327)
Q Consensus 149 ~Gs~~sh~m~lv~~~~~l~~l-------------~~p~vvQefI~h~g~d~KV~ViG~~v--~~-~~R~-S~~~~~~~~~ 211 (327)
+ +|++|.++.++++|... ..++++|+||+. |+.+-|-|+||.- +. ..|. +.....
T Consensus 166 g---gg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~vlvEefi~~-~~ei~v~v~~dg~~~~~~~~~~~~~~r~~---- 237 (467)
T PRK12833 166 G---GGRGIRVAHDAAQLAAELPLAQREAQAAFGDGGVYLERFIAR-ARHIEVQILGDGERVVHLFERECSLQRRR---- 237 (467)
T ss_pred C---CCCeEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCC-CEEEEEEEEeCCCcEEEEEEeecccccCC----
Confidence 5 45899999999888531 357999999975 6899998998743 32 2231 211000
Q ss_pred hhcCCccccccccccccCCcccccCCCCCCCCCccccccCCCC--cHHHHHHHHHHHHHHhCCcE-eEEEEEEeCCCCCc
Q 037279 212 KSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVEMP--SQSFLCELARGMREALGLNL-FNFDVMRDARDSNR 288 (327)
Q Consensus 212 ~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~lA~~~~~~lGl~l-~G~Dvi~~~~~g~~ 288 (327)
.+.-..+ +. ..++ ..+.+.++|.++.++||+.- +.+|++.+..+| .
T Consensus 238 ------------~ki~e~~-----------------p~-~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~~g-~ 286 (467)
T PRK12833 238 ------------QKILEEA-----------------PS-PSLTPAQRDALCASAVRLARQVGYRGAGTLEYLFDDARG-E 286 (467)
T ss_pred ------------ccEEEEC-----------------CC-CCCCHHHHHHHHHHHHHHHHHcCCcCcceEEEEEecCCC-C
Confidence 0000000 00 0111 24678999999999999984 349999975445 4
Q ss_pred EEEEEEcCCCCC
Q 037279 289 YLIIDVNYFPGY 300 (327)
Q Consensus 289 ~~VidVN~fPg~ 300 (327)
+|++|||.-++-
T Consensus 287 ~~~iEvNpR~~~ 298 (467)
T PRK12833 287 FYFIEMNTRIQV 298 (467)
T ss_pred EEEEEEECCCCc
Confidence 899999988864
No 42
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=99.62 E-value=1.4e-13 Score=134.45 Aligned_cols=215 Identities=14% Similarity=0.179 Sum_probs=135.3
Q ss_pred hhHHHHHHHhCCCeEEEeCCCCCccccCCccEEEEccCchhHHHHHHHHHHhCCCCccc-CcHHHHHHhcCHHHHHHHHH
Q 037279 26 QPSLLTKASERGIDLIPIDPIKPLVEQGPFDCIVHKLYGPDWTRQLQQFSSQNPNVPII-DSPDSIERLHNRISMLEVVT 104 (327)
Q Consensus 26 ~~~l~~~~~~~gi~~~~ld~~~~l~~q~~~Dvilhk~~~~~~~~~l~~~~~~~p~v~Vi-d~~~ai~~~~dR~~~~~~L~ 104 (327)
..++++.|++.+++++.+.++.++ ...+...+.+ .|++++ .+.++++++.||..+-++|+
T Consensus 16 ~~~l~~~~~~~~id~vi~g~E~~l------------------~~~~~d~l~~-~Gi~~~g~s~~a~~l~~dK~~~k~~l~ 76 (379)
T PRK13790 16 HQAILDFAKQQNVDWVVIGPEQPL------------------IDGLADILRA-NGFKVFGPNKQAAQIEGSKLFAKKIME 76 (379)
T ss_pred HHHHHHHHHHhCCCEEEECCcHHH------------------HHHHHHHHHh-CCCcEECCCHHHHHHhCCHHHHHHHHH
Confidence 346778888888888877666433 2233333333 478877 56699999999999999999
Q ss_pred hcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEEEeeccCCCCccceeeEEEeChhhhccC---------CCceEE
Q 037279 105 QLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKPLVADGSVKSHQMYLIFDSQGLESM---------TAPFVL 175 (327)
Q Consensus 105 ~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~~~~~l~~l---------~~p~vv 175 (327)
+ .|||+|++..+.+.+++.+. ...++||+|+||..+. +|+++.++.+.+++... ..++++
T Consensus 77 ~-------~gIptp~~~~~~~~~ea~~~-~~~~g~PvVvKp~~~~---~gkGV~iv~~~~el~~a~~~~~~~~~~~~vlv 145 (379)
T PRK13790 77 K-------YNIPTADYKEVERKKDALTY-IENCELPVVVKKDGLA---AGKGVIIADTIEAARSAIEIMYGDEEEGTVVF 145 (379)
T ss_pred H-------CCCCCCCEEEECCHHHHHHH-HHhcCCCEEEEeCCCC---CCCCEEEECCHHHHHHHHHHHHhcCCCCeEEE
Confidence 8 69999999998886655443 3468999999998653 56899999999887421 347999
Q ss_pred EeccCCCCeEEEEEEE--CCEEEEEEeccCCCchhhhhhhcCCccccccccccccCCcccccCCCCCCCCCccccccC-C
Q 037279 176 QEFVNHGGFIFKVYVA--GMNVKCVKRKSLPDISEEKLKSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESV-E 252 (327)
Q Consensus 176 QefI~h~g~d~KV~Vi--G~~v~~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 252 (327)
||||. |..+-|.++ |+..+. ...+ .. +.+ ..+..+ .+..++. .+. ..+. .
T Consensus 146 Ee~i~--G~E~sv~~~~~g~~~~~--~~~~---~~-~~k---r~~~~d--~g~~tgg-----------~~~---~~p~~~ 198 (379)
T PRK13790 146 ETFLE--GEEFSLMTFVNGDLAVP--FDCI---AQ-DHK---RAFDHD--EGPNTGG-----------MGA---YCPVPH 198 (379)
T ss_pred EEccc--CceEEEEEEeeCCEEEe--cccc---cc-ccc---ccccCC--CCCcCCC-----------Cce---EeeCCC
Confidence 99996 455555544 443321 1000 00 000 000000 0000000 011 1111 1
Q ss_pred CCc--HHH-HHHHHHHHHHHh---CCcEeE---EEEEEeCCCCCcEEEEEEcCCCCC
Q 037279 253 MPS--QSF-LCELARGMREAL---GLNLFN---FDVMRDARDSNRYLIIDVNYFPGY 300 (327)
Q Consensus 253 ~~~--~~~-l~~lA~~~~~~l---Gl~l~G---~Dvi~~~~~g~~~~VidVN~fPg~ 300 (327)
+++ .++ .++++.++.++| |+.++| +|++.++ +| ++|+|+|.-||=
T Consensus 199 l~~~~~~~~~~~i~~~~~~aL~~~g~~~~Gvl~~e~~lt~-~g--~~viEiN~R~G~ 252 (379)
T PRK13790 199 ISDDVLKLTNETIAQPIAKAMLNEGYQFFGVLYIGAILTK-DG--PKVIEFNARFGD 252 (379)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeC-CC--eEEEEEEcccCC
Confidence 111 122 378888888888 666666 6999974 33 899999998764
No 43
>PRK05586 biotin carboxylase; Validated
Probab=99.61 E-value=5.5e-14 Score=140.13 Aligned_cols=177 Identities=13% Similarity=0.201 Sum_probs=122.4
Q ss_pred CCCc-ccCcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEE--EEcCccchhHHHhccCCCcEEEeeccCCCCccce
Q 037279 79 PNVP-IIDSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQV--VVSEMKSLTSIEDLKLTFPVIAKPLVADGSVKSH 155 (327)
Q Consensus 79 p~v~-Vid~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~--~~~~~~~~~~~~~~~l~~P~VvKP~~~~Gs~~sh 155 (327)
-|++ +-.+++++..++||..+.++|.+ .|||+|++. .+.+.+++.+. ...++||+|+||..|+ +|+
T Consensus 98 ~gi~~~g~s~~~~~~~~DK~~~k~~l~~-------~GIpvp~~~~~~~~~~~e~~~~-~~~igyPvvvKP~~gg---gg~ 166 (447)
T PRK05586 98 CNIVFIGPDSETIELMGNKSNAREIMIK-------AGVPVVPGSEGEIENEEEALEI-AKEIGYPVMVKASAGG---GGR 166 (447)
T ss_pred CCCcEECcCHHHHHhhCCHHHHHHHHHH-------CCCCCCCCcccccCCHHHHHHH-HHHcCCCEEEEECCCC---CCC
Confidence 4665 55789999999999999999998 699999874 46666555443 4578999999999874 468
Q ss_pred eeEEEeChhhhccC-------------CCceEEEeccCCCCeEEEEEEECCE---EEEEEeccCCCchhhhhhhcCCccc
Q 037279 156 QMYLIFDSQGLESM-------------TAPFVLQEFVNHGGFIFKVYVAGMN---VKCVKRKSLPDISEEKLKSLKGFLP 219 (327)
Q Consensus 156 ~m~lv~~~~~l~~l-------------~~p~vvQefI~h~g~d~KV~ViG~~---v~~~~R~S~~~~~~~~~~~~~g~~~ 219 (327)
++.++.++++|... +.++++||||+. ++.+.|.|+++. ++....+... + .
T Consensus 167 Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~vivEe~i~g-~~ei~v~v~~d~~G~~~~~~~~~~~-~------------~ 232 (447)
T PRK05586 167 GIRIVRSEEELIKAFNTAKSEAKAAFGDDSMYIEKFIEN-PKHIEFQILGDNYGNVVHLGERDCS-L------------Q 232 (447)
T ss_pred eeEEECCHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCC-CeEEEEEEEECCCCCEEEEeceecc-e------------E
Confidence 99999999887532 357999999973 478999888753 3222111000 0 0
Q ss_pred cccccccccCCcccccCCCCCCCCCccccccCCCC--cHHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCCcEEEEEEcC
Q 037279 220 FSRISNLIDNDKKVHDDGKKNSQGDEVDLESVEMP--SQSFLCELARGMREALGLNLFN-FDVMRDARDSNRYLIIDVNY 296 (327)
Q Consensus 220 f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~lA~~~~~~lGl~l~G-~Dvi~~~~~g~~~~VidVN~ 296 (327)
-.++ +.- .. .+.+ .++ ..+.++++|.++.++||+.-.+ +|++.+. +| .+|++|||.
T Consensus 233 ~~~~-~~~------~~-----------~p~~-~l~~~~~~~l~~~a~~i~~aLg~~g~~~vEf~~~~-~g-~~~~iEvNp 291 (447)
T PRK05586 233 RRNQ-KVL------EE-----------APSP-VMTEELRKKMGEIAVKAAKAVNYKNAGTIEFLLDK-DG-NFYFMEMNT 291 (447)
T ss_pred eccc-ceE------EE-----------cCCC-CCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEcC-CC-CEEEEEEEC
Confidence 0000 000 00 0111 111 1457899999999999998655 9999975 35 489999998
Q ss_pred CCCCC
Q 037279 297 FPGYA 301 (327)
Q Consensus 297 fPg~~ 301 (327)
-|+..
T Consensus 292 R~~~~ 296 (447)
T PRK05586 292 RIQVE 296 (447)
T ss_pred CCCCC
Confidence 88643
No 44
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=99.61 E-value=6.2e-14 Score=139.76 Aligned_cols=224 Identities=13% Similarity=0.194 Sum_probs=146.1
Q ss_pred hhHHHHHHHhCCCeEEEeCCCC--C-----ccc-------------------------cCCccEEEEccC--chhHHHHH
Q 037279 26 QPSLLTKASERGIDLIPIDPIK--P-----LVE-------------------------QGPFDCIVHKLY--GPDWTRQL 71 (327)
Q Consensus 26 ~~~l~~~~~~~gi~~~~ld~~~--~-----l~~-------------------------q~~~Dvilhk~~--~~~~~~~l 71 (327)
.-+++++|+++|++++.+|.+. + +.+ ...+|+|++-.. .+. . .+
T Consensus 14 ~~~~~~aa~~lG~~vv~~~~~~d~~a~~~~~aD~~~~~~~~~~~~~y~d~~~l~~~a~~~~id~I~pg~g~~se~-~-~~ 91 (449)
T TIGR00514 14 ALRILRACKELGIKTVAVHSTADRDALHVLLADEAVCIGPAPSAKSYLNIPNIISAAEITGADAIHPGYGFLSEN-A-NF 91 (449)
T ss_pred HHHHHHHHHHcCCeEEEEEChhhhcccccccCCEEEEcCCCCchhchhCHHHHHHHHHHhCCCEEEeCCCccccC-H-HH
Confidence 4468899999999999996531 1 010 014566666441 111 1 12
Q ss_pred HHHHHhCCCCcc-cCcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEE--EEcCccchhHHHhccCCCcEEEeeccC
Q 037279 72 QQFSSQNPNVPI-IDSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQV--VVSEMKSLTSIEDLKLTFPVIAKPLVA 148 (327)
Q Consensus 72 ~~~~~~~p~v~V-id~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~--~~~~~~~~~~~~~~~l~~P~VvKP~~~ 148 (327)
.+..++ -|+++ -.+++++++++||..+.++|.+ .|||+|++. .+.+.+++.+. ...++||+|+||..|
T Consensus 92 a~~~e~-~Gi~~~g~~~~~~~~~~DK~~~r~~l~~-------~gip~pp~~~~~~~~~~e~~~~-~~~ig~PvvvKP~~g 162 (449)
T TIGR00514 92 AEQCER-SGFTFIGPSAESIRLMGDKVSAIETMKK-------AGVPCVPGSDGLVEDEEENVRI-AKRIGYPVIIKATAG 162 (449)
T ss_pred HHHHHH-CCCcEECcCHHHHHHhCCHHHHHHHHHH-------CCCCCCCCcccCcCCHHHHHHH-HHHhCCCEEEEeCCC
Confidence 333333 47765 4789999999999999999998 699998874 55565554433 457899999999997
Q ss_pred CCCccceeeEEEeChhhhccC-------------CCceEEEeccCCCCeEEEEEEECC---EEEEEE-e-ccCCCchhhh
Q 037279 149 DGSVKSHQMYLIFDSQGLESM-------------TAPFVLQEFVNHGGFIFKVYVAGM---NVKCVK-R-KSLPDISEEK 210 (327)
Q Consensus 149 ~Gs~~sh~m~lv~~~~~l~~l-------------~~p~vvQefI~h~g~d~KV~ViG~---~v~~~~-R-~S~~~~~~~~ 210 (327)
+ +|+++.++.++++|... ..++++||||+. ++.+-|-|+++ ++.... + .+...
T Consensus 163 ~---gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g-~~e~~v~v~~d~~g~~~~~~~~~~~~~~----- 233 (449)
T TIGR00514 163 G---GGRGMRVVREPDELVKSISMTRAEAKAAFGNDGVYIEKYIEN-PRHVEIQVLADKYGNAIYLGERDCSIQR----- 233 (449)
T ss_pred C---CCCccEEECCHHHHHHHHHHHHHHHHHhCCCCCEEEEECCCC-CeEEEEEEEEcCCCCEEEEeccccCcee-----
Confidence 5 45899999999887532 247999999963 57788877765 332211 1 00000
Q ss_pred hhhcCCccccccccccccCCcccccCCCCCCCCCccccccCCCC--cHHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCC
Q 037279 211 LKSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVEMP--SQSFLCELARGMREALGLN-LFNFDVMRDARDSN 287 (327)
Q Consensus 211 ~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~ 287 (327)
.. .+. ... + +. ..++ ..++++++|.++.++||+. ++.+|++.+.+ |
T Consensus 234 ----------~~-~~~------~~~-------~----p~-~~l~~~~~~~i~~~a~~~~~~lg~~G~~~vef~~~~~-g- 282 (449)
T TIGR00514 234 ----------RH-QKL------LEE-------A----PS-PALTPELRRKMGDAAVKAAVSIGYRGAGTVEFLLDKN-G- 282 (449)
T ss_pred ----------cc-cce------EEE-------C----CC-CCCCHHHHHHHHHHHHHHHHHCCCcceEEEEEEEeCC-C-
Confidence 00 000 000 0 00 0111 2467899999999999998 44599999743 4
Q ss_pred cEEEEEEcCCCCC
Q 037279 288 RYLIIDVNYFPGY 300 (327)
Q Consensus 288 ~~~VidVN~fPg~ 300 (327)
.+||+|||.-++-
T Consensus 283 ~~~viEiNpR~~~ 295 (449)
T TIGR00514 283 EFYFMEMNTRIQV 295 (449)
T ss_pred CEEEEEEECCCCC
Confidence 3899999987764
No 45
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=99.60 E-value=8.7e-14 Score=138.60 Aligned_cols=227 Identities=11% Similarity=0.180 Sum_probs=145.1
Q ss_pred hhHHHHHHHhCCCeEEEeCCCCCc-------c----------------c---------cCCccEEEEccC--chhHHHHH
Q 037279 26 QPSLLTKASERGIDLIPIDPIKPL-------V----------------E---------QGPFDCIVHKLY--GPDWTRQL 71 (327)
Q Consensus 26 ~~~l~~~~~~~gi~~~~ld~~~~l-------~----------------~---------q~~~Dvilhk~~--~~~~~~~l 71 (327)
...++++|++.|++++.++.+.+- . + ...+|+|+.-.. .+. . .+
T Consensus 14 a~~i~~aa~~~G~~vv~~~~~~d~~a~~~~~ad~~~~~~~~~~~~~y~d~~~l~~~a~~~~id~I~p~~~~~~e~-~-~~ 91 (451)
T PRK08591 14 ALRIIRACKELGIKTVAVHSTADRDALHVQLADEAVCIGPAPSKKSYLNIPAIISAAEITGADAIHPGYGFLSEN-A-DF 91 (451)
T ss_pred HHHHHHHHHHcCCeEEEEcChhhccCCCHhHCCEEEEeCCCCcccccCCHHHHHHHHHHhCCCEEEECCCccccC-H-HH
Confidence 346788999999999988543210 0 0 013566665431 111 1 12
Q ss_pred HHHHHhCCCCccc-CcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeE--EEEcCccchhHHHhccCCCcEEEeeccC
Q 037279 72 QQFSSQNPNVPII-DSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQ--VVVSEMKSLTSIEDLKLTFPVIAKPLVA 148 (327)
Q Consensus 72 ~~~~~~~p~v~Vi-d~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~--~~~~~~~~~~~~~~~~l~~P~VvKP~~~ 148 (327)
....+ .-|++++ .+++++..+.||..|.++|.+ .|||+|++ ..+.+.+++.+. ...++||+|+||..|
T Consensus 92 ~~~~e-~~gi~~~g~~~~~~~~~~DK~~~r~~l~~-------~gIp~pp~~~~~v~~~~~~~~~-~~~~g~PvvvKP~~g 162 (451)
T PRK08591 92 AEICE-DSGFTFIGPSAETIRLMGDKVTAKATMKK-------AGVPVVPGSDGPVDDEEEALAI-AKEIGYPVIIKATAG 162 (451)
T ss_pred HHHHH-HCCCceECcCHHHHHHhcCHHHHHHHHHH-------cCCCCCCCcccccCCHHHHHHH-HHHcCCCEEEEECCC
Confidence 22223 3477754 789999999999999999998 69999886 355665554443 457899999999987
Q ss_pred CCCccceeeEEEeChhhhccC-------------CCceEEEeccCCCCeEEEEEEECCE---EEEEEeccCCCchhhhhh
Q 037279 149 DGSVKSHQMYLIFDSQGLESM-------------TAPFVLQEFVNHGGFIFKVYVAGMN---VKCVKRKSLPDISEEKLK 212 (327)
Q Consensus 149 ~Gs~~sh~m~lv~~~~~l~~l-------------~~p~vvQefI~h~g~d~KV~ViG~~---v~~~~R~S~~~~~~~~~~ 212 (327)
+ +|+++.++.++++|... ...+++||||+. ++.+-+-+++|. +....-+.. .+.
T Consensus 163 ~---gs~Gv~iv~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g-~~e~~v~v~~d~~g~~~~~~~~~~-~~~----- 232 (451)
T PRK08591 163 G---GGRGMRVVRTEAELEKAFSMARAEAKAAFGNPGVYMEKYLEN-PRHIEIQVLADGHGNAIHLGERDC-SLQ----- 232 (451)
T ss_pred C---CCceEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCC-CcEEEEEEEEcCCCCEEEEecccc-cce-----
Confidence 4 45899999999887522 246999999964 567887777643 322211100 000
Q ss_pred hcCCccccccccccccCCcccccCCCCCCCCCccccc-cCCCCcHHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCcEE
Q 037279 213 SLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLE-SVEMPSQSFLCELARGMREALGLN-LFNFDVMRDARDSNRYL 290 (327)
Q Consensus 213 ~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~ 290 (327)
..+ .+....+ +. .......+.+.++|.++.++||+. ++.||++.+. +| ++|
T Consensus 233 ------~~~--~~~~~~~-----------------p~~~l~~~~~~~l~~~a~~~~~~lg~~G~~~vEf~~~~-~g-~~~ 285 (451)
T PRK08591 233 ------RRH--QKVLEEA-----------------PSPAITEELRRKIGEAAVKAAKAIGYRGAGTIEFLYEK-NG-EFY 285 (451)
T ss_pred ------ecc--eeEEEEC-----------------CCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEcC-CC-CEE
Confidence 000 0000000 00 001112568899999999999998 4459999975 34 489
Q ss_pred EEEEcCCCCC
Q 037279 291 IIDVNYFPGY 300 (327)
Q Consensus 291 VidVN~fPg~ 300 (327)
|+|||.-++.
T Consensus 286 viEINpR~~~ 295 (451)
T PRK08591 286 FIEMNTRIQV 295 (451)
T ss_pred EEEEECCCCc
Confidence 9999988864
No 46
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=99.60 E-value=9.3e-14 Score=140.19 Aligned_cols=224 Identities=13% Similarity=0.211 Sum_probs=147.2
Q ss_pred hHHHHHHHhCCCeEEEeCCCCC-------ccc-------------------------cCCccEEEEccC--chhHHHHHH
Q 037279 27 PSLLTKASERGIDLIPIDPIKP-------LVE-------------------------QGPFDCIVHKLY--GPDWTRQLQ 72 (327)
Q Consensus 27 ~~l~~~~~~~gi~~~~ld~~~~-------l~~-------------------------q~~~Dvilhk~~--~~~~~~~l~ 72 (327)
-+++++|++.|++++.++.+.+ +.+ +..+|+|++-.. ++. . .+.
T Consensus 15 ~~iiraar~lGi~~V~v~s~~d~~a~~~~~AD~~~~i~~~~~~~syld~~~i~~~a~~~~~daI~pg~gflsE~-~-~~a 92 (499)
T PRK08654 15 IRVMRACRELGIKTVAVYSEADKNALFVKYADEAYPIGPAPPSKSYLNIERIIDVAKKAGADAIHPGYGFLAEN-P-EFA 92 (499)
T ss_pred HHHHHHHHHcCCeEEEEeccccccccchhhCCEEEEcCCCCcccCccCHHHHHHHHHHhCCCEEEECCCccccC-H-HHH
Confidence 3678999999999888843311 010 013466655421 111 1 223
Q ss_pred HHHHhCCCCccc-CcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEE--EcCccchhHHHhccCCCcEEEeeccCC
Q 037279 73 QFSSQNPNVPII-DSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVV--VSEMKSLTSIEDLKLTFPVIAKPLVAD 149 (327)
Q Consensus 73 ~~~~~~p~v~Vi-d~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~--~~~~~~~~~~~~~~l~~P~VvKP~~~~ 149 (327)
+...+ .|++++ .++++++.+.||..+.+++.+ .|||+|++.. +.+.+++.+. ...++||+|+||..|+
T Consensus 93 ~~~e~-~gi~~iGps~~~i~~~~DK~~~k~~l~~-------~GVpv~p~~~~~v~~~~e~~~~-a~~igyPvvIKp~~Gg 163 (499)
T PRK08654 93 KACEK-AGIVFIGPSSDVIEAMGSKINAKKLMKK-------AGVPVLPGTEEGIEDIEEAKEI-AEEIGYPVIIKASAGG 163 (499)
T ss_pred HHHHH-CCCcEECCCHHHHHHhCCHHHHHHHHHH-------cCcCCCCCcCcCCCCHHHHHHH-HHHhCCCEEEEeCCCC
Confidence 33333 377766 578999999999999999998 6999988764 4555555443 4678999999999875
Q ss_pred CCccceeeEEEeChhhhccC-------------CCceEEEeccCCCCeEEEEEEECCE---EEE-EEec-cCCCchhhhh
Q 037279 150 GSVKSHQMYLIFDSQGLESM-------------TAPFVLQEFVNHGGFIFKVYVAGMN---VKC-VKRK-SLPDISEEKL 211 (327)
Q Consensus 150 Gs~~sh~m~lv~~~~~l~~l-------------~~p~vvQefI~h~g~d~KV~ViG~~---v~~-~~R~-S~~~~~~~~~ 211 (327)
+|++|.++.++++|... +.++++|+||+. ++.+.|-|++|. ++. ..|- |....
T Consensus 164 ---GG~Gv~iv~~~~eL~~a~~~~~~~a~~~f~~~~v~vE~~I~~-~r~ieVqvl~d~~G~vv~l~~recsiqrr----- 234 (499)
T PRK08654 164 ---GGIGMRVVYSEEELEDAIESTQSIAQSAFGDSTVFIEKYLEK-PRHIEIQILADKHGNVIHLGDRECSIQRR----- 234 (499)
T ss_pred ---CCCeEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCCC-CcEEEEEEEEcCCCCEEEEeeeccccccC-----
Confidence 46899999999887522 357999999974 578899888764 332 2232 22100
Q ss_pred hhcCCccccccccccccCCcccccCCCCCCCCCccccccC-CCCcHHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCCcE
Q 037279 212 KSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESV-EMPSQSFLCELARGMREALGLNLFN-FDVMRDARDSNRY 289 (327)
Q Consensus 212 ~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~lA~~~~~~lGl~l~G-~Dvi~~~~~g~~~ 289 (327)
.+ ++...+ |.+. .....+++.++|.++.+++|+.-+| ||++.++ | .+
T Consensus 235 ----------~q-k~ie~~-----------------Pa~~l~~~~~~~l~~~A~~l~~algy~g~gtVEfl~~~--g-~~ 283 (499)
T PRK08654 235 ----------HQ-KLIEEA-----------------PSPIMTPELRERMGEAAVKAAKAINYENAGTVEFLYSN--G-NF 283 (499)
T ss_pred ----------cc-ceEEEC-----------------CCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEEEEC--C-cE
Confidence 00 110000 1110 0012567899999999999999766 9999863 4 49
Q ss_pred EEEEEcCCCCCC
Q 037279 290 LIIDVNYFPGYA 301 (327)
Q Consensus 290 ~VidVN~fPg~~ 301 (327)
|++|||.-++..
T Consensus 284 yflEiNpRlqve 295 (499)
T PRK08654 284 YFLEMNTRLQVE 295 (499)
T ss_pred EEEEEECCCCCC
Confidence 999999888643
No 47
>PRK02186 argininosuccinate lyase; Provisional
Probab=99.59 E-value=1.9e-13 Score=146.64 Aligned_cols=224 Identities=16% Similarity=0.176 Sum_probs=145.2
Q ss_pred HHHHHHHhCCCeEEEeCCCCCc-cc-c------------------------CCccEEEEccCchhHHHHHHHHHHhCCCC
Q 037279 28 SLLTKASERGIDLIPIDPIKPL-VE-Q------------------------GPFDCIVHKLYGPDWTRQLQQFSSQNPNV 81 (327)
Q Consensus 28 ~l~~~~~~~gi~~~~ld~~~~l-~~-q------------------------~~~Dvilhk~~~~~~~~~l~~~~~~~p~v 81 (327)
.++.+++++|++++.++.+... .. + .++|.|+.- ++.+. .+...+.++-|+
T Consensus 18 ~l~~aa~~lG~~vi~v~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~~~i~~V~~~--se~~v-~~aa~lae~lgl 94 (887)
T PRK02186 18 LLLRKALLRGFTPYFLTANRGKYPFLDAIRVVTISADTSDPDRIHRFVSSLDGVAGIMSS--SEYFI-EVASEVARRLGL 94 (887)
T ss_pred HHHHHHHHcCCEEEEEeCCchhhchhhhcceeEEEcCCCCHHHHHHHHHhcCCCCEEEeC--chhhH-HHHHHHHHHhCc
Confidence 4778999999999998754311 00 0 022333321 11112 222233444467
Q ss_pred cccCcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEEEeeccCCCCccceeeEEEe
Q 037279 82 PIIDSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKPLVADGSVKSHQMYLIF 161 (327)
Q Consensus 82 ~Vid~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~ 161 (327)
+. ++++++..++||..|-+.|.+ .||++|++..+.+.+++.+. ...++||+|+||..|.| |.++.++.
T Consensus 95 pg-~~~ea~~~~~dK~~~r~~L~~-------~GIp~P~~~~v~~~~e~~~~-~~~~~~PvVVKP~~g~g---S~GV~~v~ 162 (887)
T PRK02186 95 PA-ANTEAIRTCRDKKRLARTLRD-------HGIDVPRTHALALRAVALDA-LDGLTYPVVVKPRMGSG---SVGVRLCA 162 (887)
T ss_pred CC-CCHHHHHHhcCHHHHHHHHHH-------cCCCCCCEEEeCCHHHHHHH-HHhCCCCEEEEeCCCCC---CCCeEEEC
Confidence 64 678999999999999999998 69999999999887666543 35689999999999754 47899999
Q ss_pred ChhhhccC--------CCceEEEeccCCCCeEEEEEEECCEEE--EEEeccCCCchhhhhhhcCCccccccccccccCCc
Q 037279 162 DSQGLESM--------TAPFVLQEFVNHGGFIFKVYVAGMNVK--CVKRKSLPDISEEKLKSLKGFLPFSRISNLIDNDK 231 (327)
Q Consensus 162 ~~~~l~~l--------~~p~vvQefI~h~g~d~KV~ViG~~v~--~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~ 231 (327)
|.++|... ..++++||||+..-..+-+++.++++. .+.++.... .+ .|-. .
T Consensus 163 ~~~el~~a~~~~~~~~~~~~lvEEfI~G~E~sVe~i~~~g~~~i~~i~~k~~~~----------~~-~~ve-----~--- 223 (887)
T PRK02186 163 SVAEAAAHCAALRRAGTRAALVQAYVEGDEYSVETLTVARGHQVLGITRKHLGP----------PP-HFVE-----I--- 223 (887)
T ss_pred CHHHHHHHHHHHHhcCCCcEEEeecccCCcEEEEEEEECCcEEEEEEEeeecCC----------CC-CeEE-----e---
Confidence 99887532 468999999974444444555555543 244443210 00 0100 0
Q ss_pred ccccCCCCCCCCCccccccCCCCcHHHHHHHHHHHHHHhCC--cEeEEEEEEeCCCCCcEEEEEEcCCCCC
Q 037279 232 KVHDDGKKNSQGDEVDLESVEMPSQSFLCELARGMREALGL--NLFNFDVMRDARDSNRYLIIDVNYFPGY 300 (327)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~~~lGl--~l~G~Dvi~~~~~g~~~~VidVN~fPg~ 300 (327)
|.. .|.....+..+++.+++.++.++||+ ..+++|++.++ + +++|||||.-++=
T Consensus 224 -----------g~~-~P~~l~~~~~~~l~~~~~~~l~aLG~~~G~~hvE~~~t~-~--g~~liEIn~R~~G 279 (887)
T PRK02186 224 -----------GHD-FPAPLSAPQRERIVRTVLRALDAVGYAFGPAHTELRVRG-D--TVVIIEINPRLAG 279 (887)
T ss_pred -----------ccc-cCCCCCHHHHHHHHHHHHHHHHHcCCCcCceEEEEEEEC-C--CEEEEEECCCCCC
Confidence 000 01111111246789999999999998 46889999974 2 3899999987663
No 48
>PLN02735 carbamoyl-phosphate synthase
Probab=99.58 E-value=1.5e-13 Score=149.77 Aligned_cols=235 Identities=15% Similarity=0.224 Sum_probs=155.1
Q ss_pred cchhHHHHHHHhCCCeEEEeCCCCCc---------------------c---ccCCccEEEEccCchhHH---HHHH-HHH
Q 037279 24 LIQPSLLTKASERGIDLIPIDPIKPL---------------------V---EQGPFDCIVHKLYGPDWT---RQLQ-QFS 75 (327)
Q Consensus 24 ~~~~~l~~~~~~~gi~~~~ld~~~~l---------------------~---~q~~~Dvilhk~~~~~~~---~~l~-~~~ 75 (327)
+.-..+++++++.|++++.+|.+-.. . ....+|+|++-+..+... ..+. +..
T Consensus 44 ~SG~q~~kaLke~G~~Vi~vd~np~t~~~~~~~aD~~yi~p~~~e~v~~ii~~e~~D~Iip~~gg~~gl~la~~l~~~g~ 123 (1102)
T PLN02735 44 YSGTQACKALKEEGYEVVLINSNPATIMTDPETADRTYIAPMTPELVEQVIAKERPDALLPTMGGQTALNLAVALAESGI 123 (1102)
T ss_pred chHHHHHHHHHHcCCEEEEEeCCcccccCChhhCcEEEeCCCCHHHHHHHHHHhCCCEEEECCCchhhHHHHHHHhhhCH
Confidence 34456789999999999999976310 0 113578888866443211 1222 222
Q ss_pred HhCCCCccc-CcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccCC-CcEEEeeccCCCCcc
Q 037279 76 SQNPNVPII-DSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLT-FPVIAKPLVADGSVK 153 (327)
Q Consensus 76 ~~~p~v~Vi-d~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~-~P~VvKP~~~~Gs~~ 153 (327)
.+..|++++ .+++++..+.||..+-++|.+ .|+|+|++..+.+.+++.+. ...++ ||+|+||..+.|
T Consensus 124 Le~~GI~~~G~~~~ai~~~~DK~~~k~~l~~-------~GIpvp~~~~v~s~eea~~~-~~~iG~yPvVVKP~~~~G--- 192 (1102)
T PLN02735 124 LEKYGVELIGAKLDAIKKAEDRELFKQAMEK-------IGLKTPPSGIATTLDECFEI-AEDIGEFPLIIRPAFTLG--- 192 (1102)
T ss_pred HHHCCCEEECCCHHHHHHhcCHHHHHHHHHH-------CCCCCCCeeEeCCHHHHHHH-HHHhCCCCEEEEeCCCCC---
Confidence 233477655 589999999999999999998 69999999999886655443 45677 999999998644
Q ss_pred ceeeEEEeChhhhccC---------CCceEEEeccCCCCeEEEEEEECCE---EEEEEeccCCCchhhhhhhcCCccccc
Q 037279 154 SHQMYLIFDSQGLESM---------TAPFVLQEFVNHGGFIFKVYVAGMN---VKCVKRKSLPDISEEKLKSLKGFLPFS 221 (327)
Q Consensus 154 sh~m~lv~~~~~l~~l---------~~p~vvQefI~h~g~d~KV~ViG~~---v~~~~R~S~~~~~~~~~~~~~g~~~f~ 221 (327)
++++.+++|+++|... ..++++||||. +.+.|-|-|++|. ++.. .+..++... | .+
T Consensus 193 G~Gv~iv~n~eEL~~a~~~a~~~s~~~~VLVEe~I~-G~kE~ev~Vl~D~~g~~i~v--~~ie~~dp~------g---vh 260 (1102)
T PLN02735 193 GTGGGIAYNKEEFETICKAGLAASITSQVLVEKSLL-GWKEYELEVMRDLADNVVII--CSIENIDPM------G---VH 260 (1102)
T ss_pred CCceEEECCHHHHHHHHHHHHhcCCCCeEEEEEecC-CCeEEEEEEEEcCCCCEEEE--eeEEEEcCC------c---cc
Confidence 4688899999888532 35799999995 2378999999762 2211 111111000 0 00
Q ss_pred cccccccCCcccccCCCCCCCCCccccccC-CCC--cHHHHHHHHHHHHHHhCC--cEeEEEEEEeCCCCCcEEEEEEcC
Q 037279 222 RISNLIDNDKKVHDDGKKNSQGDEVDLESV-EMP--SQSFLCELARGMREALGL--NLFNFDVMRDARDSNRYLIIDVNY 296 (327)
Q Consensus 222 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~l~~lA~~~~~~lGl--~l~G~Dvi~~~~~g~~~~VidVN~ 296 (327)
++ ......+. .++ ..+.++++|.++.++||+ ..+.+|++.+..+| ++||+|||
T Consensus 261 ------~G--------------~s~~vaPa~tL~~~~~q~l~~~A~ki~~aLgi~~G~~nVqf~l~~~~g-~~~ViEVN- 318 (1102)
T PLN02735 261 ------TG--------------DSITVAPAQTLTDKEYQRLRDYSVAIIREIGVECGGSNVQFAVNPVDG-EVMIIEMN- 318 (1102)
T ss_pred ------cC--------------CEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCCcCceEEEEEEECCCC-cEEEEEec-
Confidence 00 00000111 112 245789999999999998 58899999985345 49999999
Q ss_pred CCCCCCCC
Q 037279 297 FPGYAKMP 304 (327)
Q Consensus 297 fPg~~g~~ 304 (327)
|.+.+..
T Consensus 319 -PR~s~ss 325 (1102)
T PLN02735 319 -PRVSRSS 325 (1102)
T ss_pred -CCCCCcc
Confidence 4444443
No 49
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=99.57 E-value=2.6e-13 Score=136.26 Aligned_cols=223 Identities=14% Similarity=0.210 Sum_probs=145.8
Q ss_pred hHHHHHHHhCCCeEEEeCCCCCc-------ccc------------------------CCccEEEEcc--CchhHHHHHHH
Q 037279 27 PSLLTKASERGIDLIPIDPIKPL-------VEQ------------------------GPFDCIVHKL--YGPDWTRQLQQ 73 (327)
Q Consensus 27 ~~l~~~~~~~gi~~~~ld~~~~l-------~~q------------------------~~~Dvilhk~--~~~~~~~~l~~ 73 (327)
.+++++|+++|++++.++.+.+- .++ ...|+|++-. ..+. ..+.+
T Consensus 15 ~~ii~a~~~~Gi~~v~v~~~~d~~a~~~~~aD~~~~i~~~~~~~y~d~~~i~~~a~~~~~D~I~pg~g~lse~--~~~a~ 92 (472)
T PRK07178 15 VRIVRACAEMGIRSVAIYSEADRHALHVKRADEAYSIGADPLAGYLNPRRLVNLAVETGCDALHPGYGFLSEN--AELAE 92 (472)
T ss_pred HHHHHHHHHcCCeEEEEeCCCccCCccHhhCCEEEEcCCCchhhhcCHHHHHHHHHHHCCCEEEeCCCCcccC--HHHHH
Confidence 46889999999999998755210 000 1356666532 1111 12233
Q ss_pred HHHhCCCCccc-CcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEE--EcCccchhHHHhccCCCcEEEeeccCCC
Q 037279 74 FSSQNPNVPII-DSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVV--VSEMKSLTSIEDLKLTFPVIAKPLVADG 150 (327)
Q Consensus 74 ~~~~~p~v~Vi-d~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~--~~~~~~~~~~~~~~l~~P~VvKP~~~~G 150 (327)
..++ .|++++ .++++++.+.||..+.++|.+ .|||+|++.. +.+.+++.+. ...++||+|+||..|+
T Consensus 93 ~~e~-~Gi~~igps~~~i~~~~DK~~~r~~l~~-------~GIp~pp~~~~~~~~~~e~~~~-~~~igyPvvvKp~~gg- 162 (472)
T PRK07178 93 ICAE-RGIKFIGPSAEVIRRMGDKTEARRAMIK-------AGVPVTPGSEGNLADLDEALAE-AERIGYPVMLKATSGG- 162 (472)
T ss_pred HHHH-cCCCccCCCHHHHHHhcCHHHHHHHHHH-------CCCCCCCCcCcCCCCHHHHHHH-HHHcCCcEEEEeCCCC-
Confidence 3333 377755 679999999999999999998 6999988753 4554444332 4678999999999975
Q ss_pred CccceeeEEEeChhhhccC-------------CCceEEEeccCCCCeEEEEEEECCE---EEEE-Eec-cCCCchhhhhh
Q 037279 151 SVKSHQMYLIFDSQGLESM-------------TAPFVLQEFVNHGGFIFKVYVAGMN---VKCV-KRK-SLPDISEEKLK 212 (327)
Q Consensus 151 s~~sh~m~lv~~~~~l~~l-------------~~p~vvQefI~h~g~d~KV~ViG~~---v~~~-~R~-S~~~~~~~~~~ 212 (327)
+|++|.++.++++|... ..++++|+||+. ++.+-|-|+++. ++.. .|. |.
T Consensus 163 --Gg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~v~iE~~i~~-~~eiev~v~~d~~G~~v~~~er~~s~--------- 230 (472)
T PRK07178 163 --GGRGIRRCNSREELEQNFPRVISEATKAFGSAEVFLEKCIVN-PKHIEVQILADSHGNVVHLFERDCSI--------- 230 (472)
T ss_pred --CCCCceEeCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCC-CeEEEEEEEEECCCCEEEEEccccce---------
Confidence 46899999999888531 347999999964 688888888652 3222 121 10
Q ss_pred hcCCccccccccccccCCcccccCCCCCCCCCccccccCCCC--cHHHHHHHHHHHHHHhCCcEe-EEEEEEeCCCCCcE
Q 037279 213 SLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVEMP--SQSFLCELARGMREALGLNLF-NFDVMRDARDSNRY 289 (327)
Q Consensus 213 ~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~lA~~~~~~lGl~l~-G~Dvi~~~~~g~~~ 289 (327)
.-.. .+.... . |. ..++ ...+++++|.++.++||+.-. .+|++.+.+ | .+
T Consensus 231 ------~~~~-~~~~e~----~-------------P~-~~l~~~~~~~i~~~a~~~~~aLg~~g~~~vEf~~d~~-g-~~ 283 (472)
T PRK07178 231 ------QRRN-QKLIEI----A-------------PS-PQLTPEQRAYIGDLAVRAAKAVGYENAGTVEFLLDAD-G-EV 283 (472)
T ss_pred ------EecC-cceEEE----C-------------CC-CCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEeCC-C-CE
Confidence 0000 000000 0 10 0121 245788999999999999754 499999753 4 38
Q ss_pred EEEEEcCCCCC
Q 037279 290 LIIDVNYFPGY 300 (327)
Q Consensus 290 ~VidVN~fPg~ 300 (327)
|++|||.-++-
T Consensus 284 y~iEiNpRl~~ 294 (472)
T PRK07178 284 YFMEMNTRVQV 294 (472)
T ss_pred EEEEEeCCcCC
Confidence 99999987754
No 50
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=99.55 E-value=8.1e-13 Score=132.86 Aligned_cols=226 Identities=12% Similarity=0.149 Sum_probs=144.8
Q ss_pred hhHHHHHHHhCCCeEEEeCCCCC-------cc---------------c---------cCCccEEEEccCch-hHHHHHHH
Q 037279 26 QPSLLTKASERGIDLIPIDPIKP-------LV---------------E---------QGPFDCIVHKLYGP-DWTRQLQQ 73 (327)
Q Consensus 26 ~~~l~~~~~~~gi~~~~ld~~~~-------l~---------------~---------q~~~Dvilhk~~~~-~~~~~l~~ 73 (327)
.-+++++|+++|++.+.++.+.+ +. + ...+|+|+.-.... ... .+.+
T Consensus 14 a~~~i~aa~~lG~~~v~v~~~~d~~~~~~~~AD~~~~i~~~~~~~y~d~~~i~~~a~~~~iDaI~pg~g~lsE~~-~~a~ 92 (478)
T PRK08463 14 AVRVIRACRDLHIKSVAIYTEPDRECLHVKIADEAYRIGTDPIKGYLDVKRIVEIAKACGADAIHPGYGFLSENY-EFAK 92 (478)
T ss_pred HHHHHHHHHHcCCeEEEEECCCccCCcchhhcCEEEEcCCCchhcccCHHHHHHHHHHhCCCEEEECCCccccCH-HHHH
Confidence 34688999999999887774311 00 0 01356666533110 111 1223
Q ss_pred HHHhCCCCccc-CcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCe-EEEE--cCccchhHHHhccCCCcEEEeeccCC
Q 037279 74 FSSQNPNVPII-DSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPN-QVVV--SEMKSLTSIEDLKLTFPVIAKPLVAD 149 (327)
Q Consensus 74 ~~~~~p~v~Vi-d~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~-~~~~--~~~~~~~~~~~~~l~~P~VvKP~~~~ 149 (327)
...+ -|++++ .++++++.++||..+.+++.+ .|||+|+ +... .+.+++.+. ...++||+|+||..|+
T Consensus 93 ~~e~-~Gi~~iGps~~~i~~~~DK~~~k~~l~~-------~gIpvpp~~~~~~~~~~~~~~~~-~~~igyPvvvKP~~gg 163 (478)
T PRK08463 93 AVED-AGIIFIGPKSEVIRKMGNKNIARYLMKK-------NGIPIVPGTEKLNSESMEEIKIF-ARKIGYPVILKASGGG 163 (478)
T ss_pred HHHH-CCCceecCCHHHHHhhCcHHHHHHHHHH-------cCCCCCCCccccCCCCHHHHHHH-HHHhCCCEEEEeCCCC
Confidence 3333 478776 679999999999999999998 6999977 4433 233444332 4678999999999874
Q ss_pred CCccceeeEEEeChhhhccC-------------CCceEEEeccCCCCeEEEEEEECCE---EEE-EEec-cCCCchhhhh
Q 037279 150 GSVKSHQMYLIFDSQGLESM-------------TAPFVLQEFVNHGGFIFKVYVAGMN---VKC-VKRK-SLPDISEEKL 211 (327)
Q Consensus 150 Gs~~sh~m~lv~~~~~l~~l-------------~~p~vvQefI~h~g~d~KV~ViG~~---v~~-~~R~-S~~~~~~~~~ 211 (327)
+|++|.+++++++|... +.++++|+||+. ++.+-+-|+|+. ++. ..|- |..
T Consensus 164 ---Gg~Gv~iv~~~~eL~~a~~~~~~~a~~~~~~~~vlvEefI~~-~~~iev~v~~d~~g~v~~~~er~~s~~------- 232 (478)
T PRK08463 164 ---GGRGIRVVHKEEDLENAFESCKREALAYFNNDEVFMEKYVVN-PRHIEFQILGDNYGNIIHLCERDCSIQ------- 232 (478)
T ss_pred ---CCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCC-CeEEEEEEEEcCCCCEEEEeccCCccc-------
Confidence 45899999999887531 357999999974 577788788764 322 2221 110
Q ss_pred hhcCCccccccccccccCCcccccCCCCCCCCCccccccCCCC--cHHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCCc
Q 037279 212 KSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVEMP--SQSFLCELARGMREALGLNLFN-FDVMRDARDSNR 288 (327)
Q Consensus 212 ~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~lA~~~~~~lGl~l~G-~Dvi~~~~~g~~ 288 (327)
...+ +.. .. .+.+ .++ ....++++|.++.++||+.-+| +|++.+. +| .
T Consensus 233 --------~~~~-~~i------e~-----------~P~~-~l~~~~~~~i~~~a~~~~~alg~~g~~~vEf~~~~-~~-~ 283 (478)
T PRK08463 233 --------RRHQ-KVI------EI-----------APCP-SISDNLRKTMGVTAVAAAKAVGYTNAGTIEFLLDD-YN-R 283 (478)
T ss_pred --------cccC-ceE------EE-----------CCCC-CCCHHHHHHHHHHHHHHHHHcCCCCceeEEEEEcC-CC-C
Confidence 0000 000 00 0110 111 2456789999999999998655 9999975 34 4
Q ss_pred EEEEEEcCCCCCC
Q 037279 289 YLIIDVNYFPGYA 301 (327)
Q Consensus 289 ~~VidVN~fPg~~ 301 (327)
+||+|||.-++-.
T Consensus 284 ~y~iEiN~R~~~~ 296 (478)
T PRK08463 284 FYFMEMNTRIQVE 296 (478)
T ss_pred EEEEEEECCcCCC
Confidence 9999999877643
No 51
>PLN02735 carbamoyl-phosphate synthase
Probab=99.55 E-value=7.3e-13 Score=144.40 Aligned_cols=225 Identities=16% Similarity=0.252 Sum_probs=153.2
Q ss_pred HHHHHHhCCCeEEEeCCCCCc-------cc-----------------cCCccEEEEccCchh---HHHHHHHHHHhCC--
Q 037279 29 LLTKASERGIDLIPIDPIKPL-------VE-----------------QGPFDCIVHKLYGPD---WTRQLQQFSSQNP-- 79 (327)
Q Consensus 29 l~~~~~~~gi~~~~ld~~~~l-------~~-----------------q~~~Dvilhk~~~~~---~~~~l~~~~~~~p-- 79 (327)
.+.++++.|++.+.+|-+-.. .+ ...+|.|+.-+..+. ....+.+++.+++
T Consensus 600 ~~~alr~~G~~tI~v~~npetvstd~~~aD~~y~~pl~~e~vl~i~~~e~~d~Vi~~~Ggq~~l~la~~l~~~L~e~~~f 679 (1102)
T PLN02735 600 ASFALQDAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPDGIIVQFGGQTPLKLALPIQKYLDKNPPP 679 (1102)
T ss_pred HHHHHHHcCCeEEEEeCCCccccCCcccCCeEEEEeCCHHHHHHHHHHhCCCEEEECCCchHHHHHHHHHHHHHHhccch
Confidence 678899999999999855211 11 124677776654432 2344445544432
Q ss_pred ------CC-cccCcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEEEeeccCCCCc
Q 037279 80 ------NV-PIIDSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKPLVADGSV 152 (327)
Q Consensus 80 ------~v-~Vid~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~VvKP~~~~Gs~ 152 (327)
|+ .+-.++++++++.||..+-++|.+ .|||+|++..+.+.+++.+. ...++||+|+||..+.
T Consensus 680 a~~~~~gi~i~G~s~e~i~i~~DK~~~k~~l~~-------~GIp~p~~~~v~s~eea~~~-a~~iGyPvvVKP~~g~--- 748 (1102)
T PLN02735 680 SASGNGNVKIWGTSPDSIDAAEDRERFNAILNE-------LKIEQPKGGIARSEADALAI-AKRIGYPVVVRPSYVL--- 748 (1102)
T ss_pred hhhhcCCeEEECCCHHHHHHhcCHHHHHHHHHH-------cCCCCCCeeEeCCHHHHHHH-HHhcCCCeEEEeCCCC---
Confidence 43 345789999999999999999998 59999999998886655443 4679999999999864
Q ss_pred cceeeEEEeChhhhccC---------CCceEEEeccCCCCeEEEEEEECC---EEEE-EEeccCCCchhhhhhhcCCccc
Q 037279 153 KSHQMYLIFDSQGLESM---------TAPFVLQEFVNHGGFIFKVYVAGM---NVKC-VKRKSLPDISEEKLKSLKGFLP 219 (327)
Q Consensus 153 ~sh~m~lv~~~~~l~~l---------~~p~vvQefI~h~g~d~KV~ViG~---~v~~-~~R~S~~~~~~~~~~~~~g~~~ 219 (327)
+|++|.++++.++|... ..|+++|+||+. |+.+-|-+++| +++. ..+.-... .|
T Consensus 749 gG~G~~iV~~~eeL~~al~~a~~~~~~~~vlVEefI~~-g~Ei~V~vl~D~~G~vv~~~i~e~~~~---------~g--- 815 (1102)
T PLN02735 749 GGRAMEIVYSDDKLKTYLETAVEVDPERPVLVDKYLSD-ATEIDVDALADSEGNVVIGGIMEHIEQ---------AG--- 815 (1102)
T ss_pred CCCcEEEECCHHHHHHHHHHHHHhcCCCCEEEEEecCC-cEEEEEEEEECCCCCEEEecceEeeec---------cC---
Confidence 45799999999988532 358999999963 78999999975 2321 11110000 00
Q ss_pred cccccccccCCcccccCCCCCCCCCccccccC-CCC--cHHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCcEEEEEEc
Q 037279 220 FSRISNLIDNDKKVHDDGKKNSQGDEVDLESV-EMP--SQSFLCELARGMREALGLN-LFNFDVMRDARDSNRYLIIDVN 295 (327)
Q Consensus 220 f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~l~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~VidVN 295 (327)
..++. ..+ ..+. .++ ..++++++|.++.++||+. ++.+|++++.+ | .+||+|||
T Consensus 816 ------vhsGd-------------s~~-~~P~~~L~~e~~~~i~~~a~ki~~~L~~~G~~~vqf~v~~d-g-~~yviEiN 873 (1102)
T PLN02735 816 ------VHSGD-------------SAC-SLPTQTIPSSCLATIRDWTTKLAKRLNVCGLMNCQYAITPS-G-EVYIIEAN 873 (1102)
T ss_pred ------ccCCC-------------ccE-EecCCCCCHHHHHHHHHHHHHHHHHcCCcceeeEEEEEcCC-C-cEEEEEEe
Confidence 00000 000 0111 122 1457889999999999987 66799999643 4 48999999
Q ss_pred CCCC
Q 037279 296 YFPG 299 (327)
Q Consensus 296 ~fPg 299 (327)
.-||
T Consensus 874 pR~s 877 (1102)
T PLN02735 874 PRAS 877 (1102)
T ss_pred CCCC
Confidence 9998
No 52
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.55 E-value=8.5e-13 Score=143.90 Aligned_cols=222 Identities=15% Similarity=0.278 Sum_probs=149.0
Q ss_pred HHHHHHHhCCCeEEEeCCCCC-------ccc-----------------cCCccEEEEccCchhHHHHHHHHHHhCCCCcc
Q 037279 28 SLLTKASERGIDLIPIDPIKP-------LVE-----------------QGPFDCIVHKLYGPDWTRQLQQFSSQNPNVPI 83 (327)
Q Consensus 28 ~l~~~~~~~gi~~~~ld~~~~-------l~~-----------------q~~~Dvilhk~~~~~~~~~l~~~~~~~p~v~V 83 (327)
..++++++.|++.+.+|.+-. +.+ ...+|.|+.-+.++. ...+...+.+ .|+++
T Consensus 580 ~~~~aLk~~G~~vI~vn~npetvs~~~~~aD~~y~ep~~~e~vl~I~~~e~~dgVI~~~g~~~-~~~la~~le~-~Gi~i 657 (1068)
T PRK12815 580 HAAFALKKEGYETIMINNNPETVSTDYDTADRLYFEPLTLEDVLNVAEAENIKGVIVQFGGQT-AINLAKGLEE-AGLTI 657 (1068)
T ss_pred HHHHHHHHcCCEEEEEeCCccccccccccCceEEEccCCHHHHHHHHhhcCCCEEEEecCcHH-HHHHHHHHHH-CCCeE
Confidence 357889999999999996621 111 124566666544442 2233333333 47776
Q ss_pred c-CcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEEEeeccCCCCccceeeEEEeC
Q 037279 84 I-DSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKPLVADGSVKSHQMYLIFD 162 (327)
Q Consensus 84 i-d~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~~ 162 (327)
+ .+++++..+.||..+.++|.+ .|||+|++..+.+.+++.+. ...++||+|+||..+. ++++|.++++
T Consensus 658 lG~s~e~i~~~~DK~~f~~ll~~-------~GIp~P~~~~~~s~ee~~~~-~~~igyPvVVKP~~~~---Gg~gv~iv~~ 726 (1068)
T PRK12815 658 LGTSPDTIDRLEDRDRFYQLLDE-------LGLPHVPGLTATDEEEAFAF-AKRIGYPVLIRPSYVI---GGQGMAVVYD 726 (1068)
T ss_pred ECCcHHHHHHHcCHHHHHHHHHH-------cCcCCCCeEEeCCHHHHHHH-HHhcCCCEEEEeCCCC---CCCCEEEECC
Confidence 5 679999999999999999998 59999999999987766553 4678999999998874 4589999999
Q ss_pred hhhhcc-------CCCceEEEeccCCCCeEEEEEEECC--EEEE--EEeccCCCchhhhhhhcCCccccccccccccCCc
Q 037279 163 SQGLES-------MTAPFVLQEFVNHGGFIFKVYVAGM--NVKC--VKRKSLPDISEEKLKSLKGFLPFSRISNLIDNDK 231 (327)
Q Consensus 163 ~~~l~~-------l~~p~vvQefI~h~g~d~KV~ViG~--~v~~--~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~ 231 (327)
+++|.. ...|+++||||+ |..+-|-++.| .+.. .... +.. .|...-++
T Consensus 727 ~eeL~~~l~~~~s~~~~vlIeefI~--G~E~~Vd~i~dg~~v~i~~i~e~-~e~---------~gv~sGds--------- 785 (1068)
T PRK12815 727 EPALEAYLAENASQLYPILIDQFID--GKEYEVDAISDGEDVTIPGIIEH-IEQ---------AGVHSGDS--------- 785 (1068)
T ss_pred HHHHHHHHHHhhcCCCCEEEEEeec--CceEEEEEEEcCCceEEeeEEEE-eec---------cCCcCCCe---------
Confidence 988853 246899999994 56666666643 3321 1110 000 00000000
Q ss_pred ccccCCCCCCCCCccccccCCCC--cHHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCcEEEEEEcCCCC
Q 037279 232 KVHDDGKKNSQGDEVDLESVEMP--SQSFLCELARGMREALGLN-LFNFDVMRDARDSNRYLIIDVNYFPG 299 (327)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~VidVN~fPg 299 (327)
. .... +..++ ..+++++++.++.++||+. +++||++.++ + .+||||||.-+|
T Consensus 786 --~---------~v~p--p~~l~~~~~~~i~~~a~ki~~~L~~~G~~niqf~v~~--~-~~yviEiNpR~s 840 (1068)
T PRK12815 786 --I---------AVLP--PQSLSEEQQEKIRDYAIKIAKKLGFRGIMNIQFVLAN--D-EIYVLEVNPRAS 840 (1068)
T ss_pred --e---------EEEC--CCCCCHHHHHHHHHHHHHHHHHcCCccEEEEEEEEEC--C-cEEEEEEeCCCC
Confidence 0 0000 11111 2468899999999999977 7789999974 3 389999998887
No 53
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=99.54 E-value=4.3e-13 Score=145.89 Aligned_cols=223 Identities=13% Similarity=0.198 Sum_probs=147.5
Q ss_pred HHHHHHHhCCCeEEEeCCCCCcc-------c----------------------------cCCccEEEEcc--CchhHHHH
Q 037279 28 SLLTKASERGIDLIPIDPIKPLV-------E----------------------------QGPFDCIVHKL--YGPDWTRQ 70 (327)
Q Consensus 28 ~l~~~~~~~gi~~~~ld~~~~l~-------~----------------------------q~~~Dvilhk~--~~~~~~~~ 70 (327)
+++++|++.|++.+.++.+.+.. + ...+|+|++-. .++. . .
T Consensus 13 ri~ra~~elGi~tVav~s~~D~~s~~~~~ADe~y~v~~~~d~~~~~~Yldid~Ii~iak~~~iDaI~PGyGflsE~-~-~ 90 (1143)
T TIGR01235 13 RVFRAANELGIRTVAIYSEEDKLSLHRQKADESYQVGEGPDLGPIEAYLSIDEIIRVAKLNGVDAIHPGYGFLSEN-S-E 90 (1143)
T ss_pred HHHHHHHHcCCEEEEEECcccccCcchhhcCEEEEcCCccccCcccccCCHHHHHHHHHHhCCCEEEECCCccccC-H-H
Confidence 67899999999999997653210 0 01346666532 1111 1 2
Q ss_pred HHHHHHhCCCCccc-CcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEE--EEcCccchhHHHhccCCCcEEEeecc
Q 037279 71 LQQFSSQNPNVPII-DSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQV--VVSEMKSLTSIEDLKLTFPVIAKPLV 147 (327)
Q Consensus 71 l~~~~~~~p~v~Vi-d~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~--~~~~~~~~~~~~~~~l~~P~VvKP~~ 147 (327)
+.+...+ .|++++ .++++++.+.||..+..++.+ .|||+|++. .+.+.+++.+. ...++||+|+||..
T Consensus 91 ~a~~le~-~Gi~fiGps~e~i~~~~DK~~ar~la~~-------~GVPvpp~t~~~v~~~eea~~~-ae~iGyPvIVKP~~ 161 (1143)
T TIGR01235 91 FADACNK-AGIIFIGPKAEVMDQLGDKVAARNLAIK-------AGVPVVPGTDGPPETMEEVLDF-AAAIGYPVIIKASW 161 (1143)
T ss_pred HHHHHHH-cCCcccCCCHHHHHHhcCHHHHHHHHHH-------cCCCCCCCcccCcCCHHHHHHH-HHHcCCCEEEEECC
Confidence 2232233 367766 568999999999999999998 699999875 34555554443 46789999999988
Q ss_pred CCCCccceeeEEEeChhhhccC-------------CCceEEEeccCCCCeEEEEEEECCE---EEE-EEec-cCCCchhh
Q 037279 148 ADGSVKSHQMYLIFDSQGLESM-------------TAPFVLQEFVNHGGFIFKVYVAGMN---VKC-VKRK-SLPDISEE 209 (327)
Q Consensus 148 ~~Gs~~sh~m~lv~~~~~l~~l-------------~~p~vvQefI~h~g~d~KV~ViG~~---v~~-~~R~-S~~~~~~~ 209 (327)
|+ +|++|.++.++++|... ..++++|+||+. ++.+.|-|+||. ++. ..|- |....
T Consensus 162 GG---GGrG~riV~~~eEL~~a~~~a~~ea~~~fg~~~vlIEefI~g-~reIeVqVlgD~~G~vv~l~eRdcsvqrr--- 234 (1143)
T TIGR01235 162 GG---GGRGMRVVRSEADVADAFQRAKSEAKAAFGNDEVYVEKLIER-PRHIEVQLLGDKHGNVVHLFERDCSVQRR--- 234 (1143)
T ss_pred CC---CCCccEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCC-CeEEEEEEEEeCCCCEEEEEecccccccc---
Confidence 75 46899999999887522 357999999964 688999999775 232 3332 21100
Q ss_pred hhhhcCCccccccccccccCCcccccCCCCCCCCCcccccc-CCCCcHHHHHHHHHHHHHHhCCcEe-EEEEEEeCCCCC
Q 037279 210 KLKSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLES-VEMPSQSFLCELARGMREALGLNLF-NFDVMRDARDSN 287 (327)
Q Consensus 210 ~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~lA~~~~~~lGl~l~-G~Dvi~~~~~g~ 287 (327)
+ .+.... + +.. ......+++.++|.++.+++|+.-+ .||++++.+ |
T Consensus 235 -----------~--qk~ie~----a-------------Pa~~L~~e~r~~I~~~A~kla~aLgy~G~gtVEFlvd~d-g- 282 (1143)
T TIGR01235 235 -----------H--QKVVEV----A-------------PAPYLSREVRDEIAEYAVKLAKAVNYINAGTVEFLVDND-G- 282 (1143)
T ss_pred -----------C--ceEEEE----e-------------CCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEeCC-C-
Confidence 0 000000 0 000 0001246789999999999998755 499999853 4
Q ss_pred cEEEEEEcCCCCC
Q 037279 288 RYLIIDVNYFPGY 300 (327)
Q Consensus 288 ~~~VidVN~fPg~ 300 (327)
.+|++|||.-++.
T Consensus 283 ~~yfIEVNPRiqv 295 (1143)
T TIGR01235 283 KFYFIEVNPRIQV 295 (1143)
T ss_pred cEEEEEeecCCCc
Confidence 4899999988864
No 54
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.53 E-value=4e-13 Score=146.60 Aligned_cols=230 Identities=16% Similarity=0.248 Sum_probs=152.8
Q ss_pred hhHHHHHHHhCCCeEEEeCCCCCc------------------------cccCCccEEEEccCchhHH---HHHH-HHHHh
Q 037279 26 QPSLLTKASERGIDLIPIDPIKPL------------------------VEQGPFDCIVHKLYGPDWT---RQLQ-QFSSQ 77 (327)
Q Consensus 26 ~~~l~~~~~~~gi~~~~ld~~~~l------------------------~~q~~~Dvilhk~~~~~~~---~~l~-~~~~~ 77 (327)
-..+++++++.|++++.+|.+-.. .++..+|+|+.-+..+... ..+. +-..+
T Consensus 30 g~~~~~aLke~G~~vi~v~~~p~~~~~~~~~aD~~y~~p~~~e~l~~ii~~e~~D~Iip~~gg~~~l~~~~~l~~~~~le 109 (1066)
T PRK05294 30 GTQACKALREEGYRVVLVNSNPATIMTDPEMADATYIEPITPEFVEKIIEKERPDAILPTMGGQTALNLAVELAESGVLE 109 (1066)
T ss_pred HHHHHHHHHHcCCEEEEEcCCcccccCCcccCCEEEECCCCHHHHHHHHHHHCcCEEEECCCCchhhhhhHHHHhhCHHH
Confidence 346788999999999999965310 0112578888776443221 1111 11122
Q ss_pred CCCCccc-CcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEEEeeccCCCCcccee
Q 037279 78 NPNVPII-DSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKPLVADGSVKSHQ 156 (327)
Q Consensus 78 ~p~v~Vi-d~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~VvKP~~~~Gs~~sh~ 156 (327)
.-|++++ .++++++.+.||..+.++|.+ .|+|+|++..+.+.+++.+. ...++||+|+||..|. ++++
T Consensus 110 ~~Gv~~~g~~~~~i~~~~DK~~~k~~l~~-------~Gipvp~~~~v~s~~e~~~~-~~~ig~PvVVKP~~g~---gg~G 178 (1066)
T PRK05294 110 KYGVELIGAKLEAIDKAEDRELFKEAMKK-------IGLPVPRSGIAHSMEEALEV-AEEIGYPVIIRPSFTL---GGTG 178 (1066)
T ss_pred HCCCEEECCCHHHHHHhcCHHHHHHHHHH-------CCcCCCCeeeeCCHHHHHHH-HHHcCCCeEEEcCCCC---CCCC
Confidence 3477776 589999999999999999998 69999999999987766543 4678999999999764 5579
Q ss_pred eEEEeChhhhccC---------CCceEEEeccCCCCeEEEEEEECC---EEEEEEeccCCCchhhhhhhcCCcccccccc
Q 037279 157 MYLIFDSQGLESM---------TAPFVLQEFVNHGGFIFKVYVAGM---NVKCVKRKSLPDISEEKLKSLKGFLPFSRIS 224 (327)
Q Consensus 157 m~lv~~~~~l~~l---------~~p~vvQefI~h~g~d~KV~ViG~---~v~~~~R~S~~~~~~~~~~~~~g~~~f~~~s 224 (327)
+.++.++++|..+ ..++++||||+ +.+.+-+-|+.| ++..+. +..|+.. ...+
T Consensus 179 v~iv~~~eeL~~a~~~~~~~s~~~~vlvEe~I~-G~~Eisv~v~rd~~g~~~~~~--~~e~~dp---------~gih--- 243 (1066)
T PRK05294 179 GGIAYNEEELEEIVERGLDLSPVTEVLIEESLL-GWKEYEYEVMRDKNDNCIIVC--SIENIDP---------MGVH--- 243 (1066)
T ss_pred eEEECCHHHHHHHHHHHHhhCCCCeEEEEEccc-CceEEEEEEEEcCCCCEEEEe--eeeeccc---------ccee---
Confidence 9999999888532 24799999996 226777777754 222211 1111100 0000
Q ss_pred ccccCCcccccCCCCCCCCCccccccC-CCC--cHHHHHHHHHHHHHHhCCc--EeEEEEEEeCCCCCcEEEEEEcCCCC
Q 037279 225 NLIDNDKKVHDDGKKNSQGDEVDLESV-EMP--SQSFLCELARGMREALGLN--LFNFDVMRDARDSNRYLIIDVNYFPG 299 (327)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~l~~lA~~~~~~lGl~--l~G~Dvi~~~~~g~~~~VidVN~fPg 299 (327)
.+ ......+. .++ ..++++++|.++.++||+. .+.||++.+..+| ++||+|||.-++
T Consensus 244 ---~g--------------~~~~~~Pa~~l~~~~~~~l~~~a~ki~~aLg~~~G~~~vef~~~~~~g-~~~viEiNPR~~ 305 (1066)
T PRK05294 244 ---TG--------------DSITVAPAQTLTDKEYQMLRDASIAIIREIGVETGGCNVQFALNPKDG-RYIVIEMNPRVS 305 (1066)
T ss_pred ---cC--------------CeEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCccCceEEEEEEECCCC-cEEEEEeecCCC
Confidence 00 00000111 111 2457899999999999998 7789999985455 499999995554
No 55
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=99.53 E-value=3.9e-13 Score=146.39 Aligned_cols=232 Identities=15% Similarity=0.209 Sum_probs=154.7
Q ss_pred cchhHHHHHHHhCCCeEEEeCCCCCc-------c-----------------ccCCccEEEEccCchhHH--H-HH-HHHH
Q 037279 24 LIQPSLLTKASERGIDLIPIDPIKPL-------V-----------------EQGPFDCIVHKLYGPDWT--R-QL-QQFS 75 (327)
Q Consensus 24 ~~~~~l~~~~~~~gi~~~~ld~~~~l-------~-----------------~q~~~Dvilhk~~~~~~~--~-~l-~~~~ 75 (327)
+.-..+++++++.|++++.+|.+-.. . ....+|+++.-+..+... + .+ .+-.
T Consensus 27 ~sg~q~~kalke~G~~vi~v~~np~~~~~~~~~aD~~y~~p~~~~~v~~ii~~e~~DaIlp~~gg~~~l~la~~l~~~~~ 106 (1050)
T TIGR01369 27 YSGSQACKALKEEGYRVILVNSNPATIMTDPEMADKVYIEPLTPEAVEKIIEKERPDAILPTFGGQTALNLAVELEESGV 106 (1050)
T ss_pred chHHHHHHHHHHcCCEEEEEecchhhccCChhcCCEEEECCCCHHHHHHHHHHhCCCEEEECCCChhHHHHHhhHHHHhH
Confidence 33446889999999999999977311 0 113578888765433211 1 11 1222
Q ss_pred HhCCCCccc-CcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEEEeeccCCCCccc
Q 037279 76 SQNPNVPII-DSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKPLVADGSVKS 154 (327)
Q Consensus 76 ~~~p~v~Vi-d~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~VvKP~~~~Gs~~s 154 (327)
.+.-|++++ .+++++..+.||..+.++|.+ .|+|+|++..+.+.+++.+. ...++||+|+||..|. +|
T Consensus 107 le~~Gv~~~G~~~~ai~~~~DK~~~k~~l~~-------~Gipvp~~~~v~s~~e~~~~-~~~igyPvIVKP~~g~---gg 175 (1050)
T TIGR01369 107 LEKYGVEVLGTPVEAIKKAEDRELFREAMKE-------IGEPVPESEIAHSVEEALAA-AKEIGYPVIVRPAFTL---GG 175 (1050)
T ss_pred HHHCCCEEECCCHHHHHHhCCHHHHHHHHHH-------CCCCCCCeeecCCHHHHHHH-HHHhCCCeEEECCCCC---CC
Confidence 333478776 789999999999999999998 69999999999887665443 4578999999999764 56
Q ss_pred eeeEEEeChhhhccC-----C----CceEEEeccCCCCeEEEEEEECC---EEEEEEeccCCCchhhhhhhcCCcccccc
Q 037279 155 HQMYLIFDSQGLESM-----T----APFVLQEFVNHGGFIFKVYVAGM---NVKCVKRKSLPDISEEKLKSLKGFLPFSR 222 (327)
Q Consensus 155 h~m~lv~~~~~l~~l-----~----~p~vvQefI~h~g~d~KV~ViG~---~v~~~~R~S~~~~~~~~~~~~~g~~~f~~ 222 (327)
+++.++.++++|... . .++++||||+ +.+.+-+-|++| +.... .+..|+.+. | .+
T Consensus 176 ~Gv~iv~~~eeL~~~~~~~~~~s~~~~vlVEe~I~-G~~Eiev~v~rd~~g~~~~~--~~~e~~~p~------g---vh- 242 (1050)
T TIGR01369 176 TGGGIAYNREELKEIAERALSASPINQVLVEKSLA-GWKEIEYEVMRDSNDNCITV--CNMENFDPM------G---VH- 242 (1050)
T ss_pred CCeEEECCHHHHHHHHHHHHhcCCCCcEEEEEccc-CceEEEEEEEEeCCCCEEEE--eeceeccCc------c---ee-
Confidence 889999999888533 1 4799999996 236777777754 22211 111121100 0 00
Q ss_pred ccccccCCcccccCCCCCCCCCccccccCC-CC--cHHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCcEEEEEEcCCC
Q 037279 223 ISNLIDNDKKVHDDGKKNSQGDEVDLESVE-MP--SQSFLCELARGMREALGLN-LFNFDVMRDARDSNRYLIIDVNYFP 298 (327)
Q Consensus 223 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~l~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~VidVN~fP 298 (327)
++ ......+.. ++ ..+.++++|.++.++||+. .+.||++.+.++| ++||+|||.-+
T Consensus 243 -----~g--------------~~i~v~Pa~tl~~~~~~~l~~~a~~i~~~Lg~~G~~~Vef~l~~~~g-~~~viEiNPR~ 302 (1050)
T TIGR01369 243 -----TG--------------DSIVVAPSQTLTDKEYQMLRDASIKIIRELGIEGGCNVQFALNPDSG-RYYVIEVNPRV 302 (1050)
T ss_pred -----cC--------------ceEEEecCCCCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEECCCC-cEEEEEeecCc
Confidence 00 000001111 11 2357899999999999997 6679999986445 49999999766
Q ss_pred C
Q 037279 299 G 299 (327)
Q Consensus 299 g 299 (327)
+
T Consensus 303 ~ 303 (1050)
T TIGR01369 303 S 303 (1050)
T ss_pred C
Confidence 5
No 56
>PLN02257 phosphoribosylamine--glycine ligase
Probab=99.51 E-value=1.8e-12 Score=128.76 Aligned_cols=110 Identities=10% Similarity=0.078 Sum_probs=85.2
Q ss_pred HHHHHHHhCCCCccc-CcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEEEeeccC
Q 037279 70 QLQQFSSQNPNVPII-DSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKPLVA 148 (327)
Q Consensus 70 ~l~~~~~~~p~v~Vi-d~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~VvKP~~~ 148 (327)
.+.+.+.+ .|++++ .+.++++++.||..+-++|.+ .|||||++..+.+.+++.+. ...++||+|+||..+
T Consensus 77 ~~~d~l~~-~Gi~~~Gps~~aa~l~~dK~~~K~~l~~-------~GIptp~~~~~~~~~e~~~~-~~~~g~PvVVKp~~~ 147 (434)
T PLN02257 77 GLADDLVK-AGIPTFGPSAEAAALEGSKNFMKDLCDK-------YKIPTAKYETFTDPAAAKKY-IKEQGAPIVVKADGL 147 (434)
T ss_pred HHHHHHHH-CCCCEECChHHHHHHHcCHHHHHHHHHH-------cCCCCCCeEEeCCHHHHHHH-HHHcCCCEEEEcCCC
Confidence 34444444 378866 778899999999999999998 69999999999887666543 356899999999854
Q ss_pred CCCccceeeEEEeChhhhcc-------------CCCceEEEeccCCCCeEEEEEEECC
Q 037279 149 DGSVKSHQMYLIFDSQGLES-------------MTAPFVLQEFVNHGGFIFKVYVAGM 193 (327)
Q Consensus 149 ~Gs~~sh~m~lv~~~~~l~~-------------l~~p~vvQefI~h~g~d~KV~ViG~ 193 (327)
. .|.++.++.+.+++.. ...++++||||. |..+-|.++.|
T Consensus 148 ~---~GkGV~iv~~~~el~~a~~~~~~~~~fg~~~~~vlIEefi~--G~E~Sv~~~~d 200 (434)
T PLN02257 148 A---AGKGVVVAMTLEEAYEAVDSMLVKGAFGSAGSEVVVEEFLD--GEEASFFALVD 200 (434)
T ss_pred C---CCCCEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCC--CCEEEEEEEEC
Confidence 2 4689999999987642 125799999995 77888866533
No 57
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=99.51 E-value=1.9e-12 Score=128.90 Aligned_cols=225 Identities=12% Similarity=0.196 Sum_probs=141.8
Q ss_pred hHHHHHHHhCCCeEEEeCCCCCc-------cc-------------------------cCCccEEEEccC--chhHHHHHH
Q 037279 27 PSLLTKASERGIDLIPIDPIKPL-------VE-------------------------QGPFDCIVHKLY--GPDWTRQLQ 72 (327)
Q Consensus 27 ~~l~~~~~~~gi~~~~ld~~~~l-------~~-------------------------q~~~Dvilhk~~--~~~~~~~l~ 72 (327)
..++.+|++.|+.++.+|.+... .+ ....|+|+.-.. .+. . .+.
T Consensus 15 ~~~~~~a~~lG~~~v~~~~~~~~~a~~~~~ad~~~~~~~~~~~~~~~d~~~l~~~~~~~~id~I~p~~~~~~e~-~-~~~ 92 (450)
T PRK06111 15 VRIIRTCQKLGIRTVAIYSEADRDALHVKMADEAYLIGGPRVQESYLNLEKIIEIAKKTGAEAIHPGYGLLSEN-A-SFA 92 (450)
T ss_pred HHHHHHHHHcCCeEEEEechhhccCcchhhCCEEEEcCCCCccccccCHHHHHHHHHHhCCCEEEeCCCccccC-H-HHH
Confidence 35678899999999988743210 00 013466665321 111 1 122
Q ss_pred HHHHhCCCCccc-CcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeE--EEEcCccchhHHHhccCCCcEEEeeccCC
Q 037279 73 QFSSQNPNVPII-DSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQ--VVVSEMKSLTSIEDLKLTFPVIAKPLVAD 149 (327)
Q Consensus 73 ~~~~~~p~v~Vi-d~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~--~~~~~~~~~~~~~~~~l~~P~VvKP~~~~ 149 (327)
...+. -|++++ .++++++++.||..+.++|.+ .|||+|++ ..+.+.+++.+. ...++||+|+||..|+
T Consensus 93 ~~~~~-~g~~~~g~~~~~~~~~~dK~~~k~~l~~-------~gIp~p~~~~~~~~~~~e~~~~-~~~~~~P~VvKP~~g~ 163 (450)
T PRK06111 93 ERCKE-EGIVFIGPSADIIAKMGSKIEARRAMQA-------AGVPVVPGITTNLEDAEEAIAI-ARQIGYPVMLKASAGG 163 (450)
T ss_pred HHHHH-CCCeEECCCHHHHHHhCCHHHHHHHHHH-------CCCCCCCCcCcCcCCHHHHHHH-HHHhCCCEEEEeCCCC
Confidence 22233 367655 679999999999999999998 69999986 444555544433 3568999999998875
Q ss_pred CCccceeeEEEeChhhhccC-------------CCceEEEeccCCCCeEEEEEEECC---EEEEE-EeccCCCchhhhhh
Q 037279 150 GSVKSHQMYLIFDSQGLESM-------------TAPFVLQEFVNHGGFIFKVYVAGM---NVKCV-KRKSLPDISEEKLK 212 (327)
Q Consensus 150 Gs~~sh~m~lv~~~~~l~~l-------------~~p~vvQefI~h~g~d~KV~ViG~---~v~~~-~R~S~~~~~~~~~~ 212 (327)
+|+++.++.+.++|... ..++++||||+. ++.+.+.++++ ++... .+.. .+..
T Consensus 164 ---gs~Gv~iv~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~i~g-~~e~~v~v~~~~~g~~~~~~~~~~--~~~~---- 233 (450)
T PRK06111 164 ---GGIGMQLVETEQELTKAFESNKKRAANFFGNGEMYIEKYIED-PRHIEIQLLADTHGNTVYLWEREC--SVQR---- 233 (450)
T ss_pred ---CCceEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEcccCC-CcEEEEEEEEcCCCCEEEEEeecc--cccc----
Confidence 46899999999887521 347999999973 45677666653 23322 2210 0000
Q ss_pred hcCCccccccccccccCCcccccCCCCCCCCCcccccc-CCCCcHHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCcEE
Q 037279 213 SLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLES-VEMPSQSFLCELARGMREALGLN-LFNFDVMRDARDSNRYL 290 (327)
Q Consensus 213 ~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~ 290 (327)
.+ .+.-.. . +.+ ........++++|.++.++||+. ++.+|++.+.+ | ++|
T Consensus 234 -------~~--~~~~~~----~-------------p~~~~~~~~~~~i~~~a~~~~~~lg~~g~~~ve~~~~~~-g-~~~ 285 (450)
T PRK06111 234 -------RH--QKVIEE----A-------------PSPFLDEETRKAMGERAVQAAKAIGYTNAGTIEFLVDEQ-K-NFY 285 (450)
T ss_pred -------cc--cceEEe----c-------------CCCCCCHHHHHHHHHHHHHHHHHcCCCCceeEEEEEcCC-C-CEE
Confidence 00 000000 0 000 00012457889999999999996 66699999753 4 389
Q ss_pred EEEEcCCCCC
Q 037279 291 IIDVNYFPGY 300 (327)
Q Consensus 291 VidVN~fPg~ 300 (327)
|+|||.-++-
T Consensus 286 viEiN~R~~~ 295 (450)
T PRK06111 286 FLEMNTRLQV 295 (450)
T ss_pred EEEEECCcCC
Confidence 9999988863
No 58
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=99.51 E-value=2.5e-12 Score=127.14 Aligned_cols=125 Identities=10% Similarity=0.068 Sum_probs=92.3
Q ss_pred CccEEEEccCchhHHHHHHHHHHhCCCCccc-CcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHH
Q 037279 54 PFDCIVHKLYGPDWTRQLQQFSSQNPNVPII-DSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSI 132 (327)
Q Consensus 54 ~~Dvilhk~~~~~~~~~l~~~~~~~p~v~Vi-d~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~ 132 (327)
.+|+++.-.... ....+...+.+ .|++++ .++++++++.||..|.++|.+ .|||+|++..+.+.+++.+.
T Consensus 62 ~id~vi~~~e~~-l~~~~~~~l~~-~gi~~~g~~~~~~~~~~dK~~~k~~l~~-------~gip~p~~~~~~~~~~~~~~ 132 (420)
T PRK00885 62 GIDLTVVGPEAP-LVAGIVDAFRA-AGLPIFGPTKAAAQLEGSKAFAKDFMAR-------YGIPTAAYETFTDAEEALAY 132 (420)
T ss_pred CCCEEEECCchH-HHHHHHHHHHH-CCCcEECcCHHHHHHHcCHHHHHHHHHH-------cCCCCCCeEEeCCHHHHHHH
Confidence 467777432212 22233333333 478876 578899999999999999998 69999999999887766554
Q ss_pred HhccCCCcEEEeeccCCCCccceeeEEEeChhhhcc-------------CCCceEEEeccCCCCeEEEEEEECC
Q 037279 133 EDLKLTFPVIAKPLVADGSVKSHQMYLIFDSQGLES-------------MTAPFVLQEFVNHGGFIFKVYVAGM 193 (327)
Q Consensus 133 ~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~~~~~l~~-------------l~~p~vvQefI~h~g~d~KV~ViG~ 193 (327)
...++||+|+||..+. +|.++.++.+++++.. ...++++||||+ |..+-|.++.+
T Consensus 133 -~~~~~~P~VvKP~~~~---gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~--G~E~sv~~~~~ 200 (420)
T PRK00885 133 -LDEKGAPIVVKADGLA---AGKGVVVAMTLEEAKAAVDDMLAGNKFGDAGARVVIEEFLD--GEEASFFAFVD 200 (420)
T ss_pred -HHHcCCCEEEEeCCCC---CCCcEEEeCCHHHHHHHHHHHhhcccccCCCCeEEEEEccC--CcEEEEEEEEC
Confidence 3568999999998764 4579999999987742 124799999996 67888877744
No 59
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=99.50 E-value=1.1e-13 Score=119.65 Aligned_cols=151 Identities=22% Similarity=0.331 Sum_probs=79.3
Q ss_pred hcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEEEeeccCCCCccceeeEEEeChhhhccC-CC
Q 037279 93 LHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKPLVADGSVKSHQMYLIFDSQGLESM-TA 171 (327)
Q Consensus 93 ~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~~~~~l~~l-~~ 171 (327)
|.||+.+++.|.+ .+|++|.++..... ....+|+|+||..|+|+ .++.++.+.+.+... ..
T Consensus 1 ~~dK~~~~~~L~~-------~gi~~P~~~~~~~~--------~~~~~~~viKp~~G~Gg---~~i~~~~~~~~~~~~~~~ 62 (161)
T PF02655_consen 1 CSDKLKTYKFLKE-------LGIPVPTTLRDSEP--------EPIDGPWVIKPRDGAGG---EGIRIVDSEDELEEFLNK 62 (161)
T ss_dssp -TSHHHHHHHHTT-------T-S--------EES--------S--SSSEEEEESS----------B--SS--TTE-----
T ss_pred CCCHHHHHHHHHc-------cCCCCCCccccccc--------cccCCcEEEEeCCCCCC---CCeEEECCchhhcccccc
Confidence 6899999999998 59999954433321 23478999999998655 789999999888744 33
Q ss_pred ceEEEeccCCCCeEEEEEEECCE----EEEEEeccCCCchhhhhhhcCCccccccccccccCCcccccCCCCCCCCCccc
Q 037279 172 PFVLQEFVNHGGFIFKVYVAGMN----VKCVKRKSLPDISEEKLKSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVD 247 (327)
Q Consensus 172 p~vvQefI~h~g~d~KV~ViG~~----v~~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~ 247 (327)
..++||||+ |..+-+.++.+. +.++.|..+..- . ..+.|. |.
T Consensus 63 ~~i~Qe~i~--G~~~Sv~~l~~~~~~~~l~~~rq~i~~~-~-------~~~~~~---------------------G~--- 108 (161)
T PF02655_consen 63 LRIVQEFIE--GEPYSVSFLASGGGARLLGVNRQLIGND-D-------GRFRYC---------------------GG--- 108 (161)
T ss_dssp --EEEE-----SEEEEEEEEE-SSSEEEEEEEEEEEET------------TEEE---------------------EE---
T ss_pred ceEEeeeeC--CEEeEEEEEEeCCceEEEEechHhhccc-c-------ceeeec---------------------cc---
Confidence 349999995 888888888654 233455543210 0 001111 00
Q ss_pred cccCCCCcHHHHHHHHHHHHHHh-CCc-EeEEEEEEeCCCCCcEEEEEEcCCC
Q 037279 248 LESVEMPSQSFLCELARGMREAL-GLN-LFNFDVMRDARDSNRYLIIDVNYFP 298 (327)
Q Consensus 248 ~~~~~~~~~~~l~~lA~~~~~~l-Gl~-l~G~Dvi~~~~~g~~~~VidVN~fP 298 (327)
..+...+..+++.++|.+++++| ||. ++|||+|.++ + ++||||||-=|
T Consensus 109 ~~~~~~~~~~~~~~~~~~i~~~l~gl~G~~giD~I~~~--~-~~~viEINPR~ 158 (161)
T PF02655_consen 109 IVPADTPLKEEIIELARRIAEALPGLRGYVGIDFILDD--G-GPYVIEINPRF 158 (161)
T ss_dssp EES----HHHHHHHHHHHHHTTSTT--EEEEEEEEESS----SEEEEEEESS-
T ss_pred ccccCCchHHHHHHHHHHHHHHcCCCeeeEeEEEEEeC--C-cEEEEEEcCCC
Confidence 01112233678999999999999 988 8899999975 2 48999999644
No 60
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=99.50 E-value=2.2e-12 Score=123.18 Aligned_cols=187 Identities=22% Similarity=0.351 Sum_probs=135.3
Q ss_pred CccEEEEccCchhHHHHHHHHHHhCCCCccc--CcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhH
Q 037279 54 PFDCIVHKLYGPDWTRQLQQFSSQNPNVPII--DSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTS 131 (327)
Q Consensus 54 ~~Dvilhk~~~~~~~~~l~~~~~~~p~v~Vi--d~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~ 131 (327)
.+|+++++.......++-.+|.+. |+.++ -+.+++..+.||+.+++.+++ .++++|+++.+.+.+++..
T Consensus 66 ~Idv~~P~~~~~~l~~~r~~F~a~--Gv~l~~~~~~~~l~~~~dK~~~y~~~~~-------~~ipvp~~~~v~t~~el~~ 136 (329)
T PF15632_consen 66 GIDVFVPGRNRELLAAHRDEFEAL--GVKLLTASSAETLELADDKAAFYEFMEA-------NGIPVPPYWRVRTADELKA 136 (329)
T ss_pred CCeEEEcCccHHHHHHHHHHHHHh--CCEEEecCCHHHHHHHhhHHHHHHHHHh-------CCCCCCCEEEeCCHHHHHH
Confidence 578888887655444455566555 44444 569999999999999999998 6999999999999888866
Q ss_pred HHhccCCCc---EEEeeccCCCCccceeeEEEe-ChhhhccC----------------------CCceEEEeccCCCCeE
Q 037279 132 IEDLKLTFP---VIAKPLVADGSVKSHQMYLIF-DSQGLESM----------------------TAPFVLQEFVNHGGFI 185 (327)
Q Consensus 132 ~~~~~l~~P---~VvKP~~~~Gs~~sh~m~lv~-~~~~l~~l----------------------~~p~vvQefI~h~g~d 185 (327)
+. +.+++| +.+||..|.| +.|..++. +.+.+..+ -+|++++||++-+-+-
T Consensus 137 a~-~~l~~~~~~~CvKP~~g~g---g~GFr~l~~~~~~l~~l~~~~~~~i~~~~~~~~l~~~~~~~~llvMeyL~G~EyS 212 (329)
T PF15632_consen 137 AY-EELRFPGQPLCVKPAVGIG---GRGFRVLDESRDELDALFEPDSRRISLDELLAALQRSEEFPPLLVMEYLPGPEYS 212 (329)
T ss_pred HH-HhcCCCCceEEEecccCCC---cceEEEEccCcchHHHhcCCCcceeCHHHHHHHHhccCCCCCcEEecCCCCCeEE
Confidence 54 345555 9999999864 47899988 44444322 2589999999644333
Q ss_pred EEEEEECCEEEE-EEeccCCCchhhhhhhcCCccccccccccccCCcccccCCCCCCCCCccccccCCCCcHHHHHHHHH
Q 037279 186 FKVYVAGMNVKC-VKRKSLPDISEEKLKSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVEMPSQSFLCELAR 264 (327)
Q Consensus 186 ~KV~ViG~~v~~-~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~ 264 (327)
+=|.+-++++.+ +.|+-. .. .+ ....++++-++|.
T Consensus 213 VD~l~~~G~viaaV~R~K~-G~---------------------------~q----------------~l~~~~~l~e~a~ 248 (329)
T PF15632_consen 213 VDCLADEGRVIAAVPRRKL-GR---------------------------RQ----------------VLENDEELIELAR 248 (329)
T ss_pred EEEEecCCEEEEEEEEEec-Cc---------------------------ee----------------EEEECHHHHHHHH
Confidence 344555567764 556643 10 00 0112457889999
Q ss_pred HHHHHhCCc-EeEEEEEEeCCCCCcEEEEEEcCCCC
Q 037279 265 GMREALGLN-LFNFDVMRDARDSNRYLIIDVNYFPG 299 (327)
Q Consensus 265 ~~~~~lGl~-l~G~Dvi~~~~~g~~~~VidVN~fPg 299 (327)
++++.|||+ +++|++..+. +|. ++++|||.=|+
T Consensus 249 ~l~~~~~l~g~~NiQ~r~d~-~g~-p~LLEINpR~s 282 (329)
T PF15632_consen 249 RLAEAFGLDGLFNIQFRYDE-DGN-PKLLEINPRPS 282 (329)
T ss_pred HHHHHhCCCceEEEEEEEcC-CCC-EEEEEeCCCCc
Confidence 999999999 8899999975 454 89999998776
No 61
>PRK06524 biotin carboxylase-like protein; Validated
Probab=99.47 E-value=1.9e-12 Score=128.91 Aligned_cols=188 Identities=12% Similarity=0.174 Sum_probs=120.5
Q ss_pred HHHHHHhCCCCcc-cCcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEc--CccchhHHH-hccCCCcEEEeec
Q 037279 71 LQQFSSQNPNVPI-IDSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVS--EMKSLTSIE-DLKLTFPVIAKPL 146 (327)
Q Consensus 71 l~~~~~~~p~v~V-id~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~--~~~~~~~~~-~~~l~~P~VvKP~ 146 (327)
+|..++. -|+++ .-++.++.+|+||..+.+++++ .|||||++..+. +.+++.... ...++||+|+||.
T Consensus 118 iQ~lLE~-lGIpy~gP~a~asai~mDK~~tK~l~~~-------aGIPtpp~~~~~~~~~eel~~~~~~~~IGyPvVVKP~ 189 (493)
T PRK06524 118 TEALARQ-AGLEVMHPPAELRHRLDSKIVTTRLANE-------AGVPSVPHVLGRVDSYDELSALAHGAGLGDDLVVQTP 189 (493)
T ss_pred HHHHHHH-CCCeEECcCHHHHHHhCCHHHHHHHHHH-------cCCCCCCcccccCCCHHHHHHHHHhccCCCcEEEEEC
Confidence 4444433 37888 7889999999999999999987 699999998853 333332222 2249999999999
Q ss_pred cCCCCccceeeEEEeChhhhccC-----C-CceEEEeccCCCCeEEEE--EEECCE-EEE-EEeccCCCchhhhhhhcCC
Q 037279 147 VADGSVKSHQMYLIFDSQGLESM-----T-APFVLQEFVNHGGFIFKV--YVAGMN-VKC-VKRKSLPDISEEKLKSLKG 216 (327)
Q Consensus 147 ~~~Gs~~sh~m~lv~~~~~l~~l-----~-~p~vvQefI~h~g~d~KV--~ViG~~-v~~-~~R~S~~~~~~~~~~~~~g 216 (327)
.| + .|+++.+|.++++|..+ . ..+++|+||+ |+.+-| ++.++. +.. ..+..++.. +..
T Consensus 190 ~G--G-SS~GV~~Vkn~eELe~a~~~~~~~~~viVEe~I~--GrEitVev~vd~dG~Vv~~~~~e~vg~~---Ei~---- 257 (493)
T PRK06524 190 YG--D-SGSTTFFVRGQRDWDKYAGGIVGQPEIKVMKRIR--NVEVCIEACVTRHGTVIGPAMTSLVGYP---ELT---- 257 (493)
T ss_pred CC--C-CCcCEEEeCCHHHHHHHHHHhcCCCCEEEEeccC--cEEEEEEEEEeCCCCEEeccccccccce---EEE----
Confidence 75 3 47999999999988643 2 4589999995 676655 554442 322 112111110 000
Q ss_pred ccccccccccccCCcccccCCCCCCCCCccccccCCCC--cHHHHHHHHHHHHHHh---CC-cEeEEEEEEeCCCCCcEE
Q 037279 217 FLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVEMP--SQSFLCELARGMREAL---GL-NLFNFDVMRDARDSNRYL 290 (327)
Q Consensus 217 ~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~lA~~~~~~l---Gl-~l~G~Dvi~~~~~g~~~~ 290 (327)
.+.+ .... . ...+..++ ...+++++|.++.++| |+ .+++||++.+.++| .+|
T Consensus 258 --~yr~--G~~~-----~------------~i~PA~L~~ei~eeIqeiA~ka~~aL~~lG~~Gv~rVDFfvd~ddg-evY 315 (493)
T PRK06524 258 --PYRG--GWCG-----N------------DIWPGALPPAQTRKAREMVRKLGDVLSREGYRGYFEVDLLHDLDAD-ELY 315 (493)
T ss_pred --EccC--CeEE-----E------------EEccCCCCHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEEEEECCCC-eEE
Confidence 0000 0000 0 00111222 2457899999999999 33 36679999985445 489
Q ss_pred EEEEcCCCCC
Q 037279 291 IIDVNYFPGY 300 (327)
Q Consensus 291 VidVN~fPg~ 300 (327)
++|||.-|+=
T Consensus 316 fnEINPR~~G 325 (493)
T PRK06524 316 LGEVNPRLSG 325 (493)
T ss_pred EEEEeCCccc
Confidence 9999977663
No 62
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.46 E-value=3.7e-12 Score=138.94 Aligned_cols=235 Identities=16% Similarity=0.218 Sum_probs=154.4
Q ss_pred ccchhHHHHHHHhCCCeEEEeCCCCCc-------c-----------------ccCCccEEEEccCchhHH---HHHH-HH
Q 037279 23 SLIQPSLLTKASERGIDLIPIDPIKPL-------V-----------------EQGPFDCIVHKLYGPDWT---RQLQ-QF 74 (327)
Q Consensus 23 ~~~~~~l~~~~~~~gi~~~~ld~~~~l-------~-----------------~q~~~Dvilhk~~~~~~~---~~l~-~~ 74 (327)
.+.-..+++++++.|++++.+|.+-.. . ..-.+|+|+.-+..+... ..+. +-
T Consensus 27 d~sg~q~~~aL~e~G~~vi~v~~np~~~~~d~~~ad~~y~ep~~~e~l~~ii~~e~~D~Iip~~gg~~~l~~a~~l~~~g 106 (1068)
T PRK12815 27 DYSGTQACLALKEEGYQVVLVNPNPATIMTDPAPADTVYFEPLTVEFVKRIIAREKPDALLATLGGQTALNLAVKLHEDG 106 (1068)
T ss_pred hhHHHHHHHHHHHcCCEEEEEeCCcchhhcCcccCCeeEECCCCHHHHHHHHHHhCcCEEEECCCCchHHHHHHHHHhcC
Confidence 334456889999999999999966320 0 112578888755333221 1121 11
Q ss_pred HHhCCCCccc-CcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEEEeeccCCCCcc
Q 037279 75 SSQNPNVPII-DSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKPLVADGSVK 153 (327)
Q Consensus 75 ~~~~p~v~Vi-d~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~VvKP~~~~Gs~~ 153 (327)
..+.-|++++ .+++++..+.||..+.++|.+ .|+|+|++..+.+.+++.+. ...++||+|+||..|. +
T Consensus 107 ~Le~~gv~l~g~~~~~i~~~~DK~~~k~~l~~-------~GIpvp~~~~v~s~ee~~~~-~~~igyPvVVKP~~g~---g 175 (1068)
T PRK12815 107 ILEQYGVELLGTNIEAIQKGEDRERFRALMKE-------LGEPVPESEIVTSVEEALAF-AEKIGFPIIVRPAYTL---G 175 (1068)
T ss_pred HHHHCCCEEECCCHHHHHHhcCHHHHHHHHHH-------cCcCCCCceeeCCHHHHHHH-HHHcCCCEEEEECcCC---C
Confidence 1233478776 688999999999999999998 59999999999987666543 4578999999999864 4
Q ss_pred ceeeEEEeChhhhccC---------CCceEEEeccCCCCeEEEEEEECCE---EEEEEeccCCCchhhhhhhcCCccccc
Q 037279 154 SHQMYLIFDSQGLESM---------TAPFVLQEFVNHGGFIFKVYVAGMN---VKCVKRKSLPDISEEKLKSLKGFLPFS 221 (327)
Q Consensus 154 sh~m~lv~~~~~l~~l---------~~p~vvQefI~h~g~d~KV~ViG~~---v~~~~R~S~~~~~~~~~~~~~g~~~f~ 221 (327)
++++.++.++++|... ..++++||||+ +...+-|-|+.|. +.... +..|+..... +
T Consensus 176 G~Gv~iv~~~eEL~~a~~~~~~~s~~~~vLVEe~I~-G~~E~sv~v~rD~~g~~~~~~--~~e~~~p~gi---------~ 243 (1068)
T PRK12815 176 GTGGGIAENLEELEQLFKQGLQASPIHQCLLEESIA-GWKEIEYEVMRDRNGNCITVC--NMENIDPVGI---------H 243 (1068)
T ss_pred CCceEEECCHHHHHHHHHHHHhcCCCCeEEEEEccC-CCeEEEEEEEEcCCCCEEEEE--eceecccccc---------c
Confidence 5788899999888532 14799999996 2367888888652 32211 1111111000 0
Q ss_pred cccccccCCcccccCCCCCCCCCccccccC-CCC--cHHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCcEEEEEEcCC
Q 037279 222 RISNLIDNDKKVHDDGKKNSQGDEVDLESV-EMP--SQSFLCELARGMREALGLN-LFNFDVMRDARDSNRYLIIDVNYF 297 (327)
Q Consensus 222 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~l~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~VidVN~f 297 (327)
++. . ....+. .++ ..++++++|.++.++||+. .++||+..+.++| +++|+|||
T Consensus 244 ------tG~-------------s-~~v~Pa~~l~~~~~~~l~~~a~ki~~~Lg~~G~~~vef~l~~~~g-~~~ViEIN-- 300 (1068)
T PRK12815 244 ------TGD-------------S-IVVAPSQTLTDDEYQMLRSASLKIISALGVVGGCNIQFALDPKSK-QYYLIEVN-- 300 (1068)
T ss_pred ------CCc-------------e-EEEecCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEEEECCCC-cEEEEEEe--
Confidence 000 0 000111 111 1356899999999999995 6679999986545 49999999
Q ss_pred CCCCCC
Q 037279 298 PGYAKM 303 (327)
Q Consensus 298 Pg~~g~ 303 (327)
|.+.+.
T Consensus 301 PR~~~s 306 (1068)
T PRK12815 301 PRVSRS 306 (1068)
T ss_pred cCcccc
Confidence 555443
No 63
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=99.45 E-value=1.7e-11 Score=121.59 Aligned_cols=103 Identities=11% Similarity=0.096 Sum_probs=81.4
Q ss_pred CCCcccCcH-HHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEEEeeccCCCCccceee
Q 037279 79 PNVPIIDSP-DSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKPLVADGSVKSHQM 157 (327)
Q Consensus 79 p~v~Vid~~-~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~VvKP~~~~Gs~~sh~m 157 (327)
.|++++-|. .+.+++.||..+-++|.+ .|||||++..+.+.+++.+. ...++||+|+||..+. .|.++
T Consensus 91 ~Gip~~Gp~~~aa~le~dK~~~K~~l~~-------~gIpt~~~~~~~~~~ea~~~-~~~~~~PvVVKp~~~~---~gkGV 159 (426)
T PRK13789 91 LGIPCFGPDSYCAQVEGSKHFAKSLMKE-------AKIPTASYKTFTEYSSSLSY-LESEMLPIVIKADGLA---AGKGV 159 (426)
T ss_pred cCCCcCCCHHHHHHHHcCHHHHHHHHHH-------cCCCCCCeEeeCCHHHHHHH-HHhcCCCEEEEeCCCC---CCCcE
Confidence 378887544 577899999999999998 69999999998886666554 3468999999998643 46899
Q ss_pred EEEeChhhhccC-------------CCceEEEeccCCCCeEEEEEEECCE
Q 037279 158 YLIFDSQGLESM-------------TAPFVLQEFVNHGGFIFKVYVAGMN 194 (327)
Q Consensus 158 ~lv~~~~~l~~l-------------~~p~vvQefI~h~g~d~KV~ViG~~ 194 (327)
.++.+.+++... ...+++||||+ |..+-|.++.+.
T Consensus 160 ~vv~~~eel~~a~~~~~~~~~~g~~~~~vlIEEfl~--G~E~Sv~~~~dg 207 (426)
T PRK13789 160 TVATEKKMAKRALKEIFKDKKFGQSGNQVVIEEFME--GQEASIFAISDG 207 (426)
T ss_pred EEECCHHHHHHHHHHHHhhccccCCCCeEEEEECcC--CeEEEEEEEECC
Confidence 999999876421 13699999995 789999888653
No 64
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=99.43 E-value=1.6e-11 Score=121.32 Aligned_cols=124 Identities=10% Similarity=0.060 Sum_probs=90.4
Q ss_pred CccEEEEccCchhHHHHHHHHHHhCCCCccc-CcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHH
Q 037279 54 PFDCIVHKLYGPDWTRQLQQFSSQNPNVPII-DSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSI 132 (327)
Q Consensus 54 ~~Dvilhk~~~~~~~~~l~~~~~~~p~v~Vi-d~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~ 132 (327)
.+|+++.-.- ......+.+.+.++ +++++ .+.++++++.||+.|.++|.+ .|||+|++..+.+.+++.+.
T Consensus 64 ~id~vi~~~e-~~l~~~~~~~l~~~-gi~~~g~~~~~~~~~~dK~~~k~~l~~-------~gIp~p~~~~~~~~~~~~~~ 134 (423)
T TIGR00877 64 KIDLAVIGPE-APLVLGLVDALEEA-GIPVFGPTKEAAQLEGSKAFAKDFMKR-------YGIPTAEYEVFTDPEEALSY 134 (423)
T ss_pred CCCEEEECCc-hHHHHHHHHHHHHC-CCeEECCCHHHHHHHCCHHHHHHHHHH-------CCCCCCCeEEECCHHHHHHH
Confidence 4566654221 11122333344443 67765 688999999999999999998 69999999999987766543
Q ss_pred HhccCCCc-EEEeeccCCCCccceeeEEEeChhhhccC------------CCceEEEeccCCCCeEEEEEEEC
Q 037279 133 EDLKLTFP-VIAKPLVADGSVKSHQMYLIFDSQGLESM------------TAPFVLQEFVNHGGFIFKVYVAG 192 (327)
Q Consensus 133 ~~~~l~~P-~VvKP~~~~Gs~~sh~m~lv~~~~~l~~l------------~~p~vvQefI~h~g~d~KV~ViG 192 (327)
...++|| +|+||..+. +|+++.++.+.+++... ..++++||||+ |..+-|.++.
T Consensus 135 -~~~~g~P~~VvKp~~~~---gg~Gv~~v~~~~el~~~~~~~~~~~~g~~~~~~lvEe~i~--G~E~sv~~~~ 201 (423)
T TIGR00877 135 -IQEKGAPAIVVKADGLA---AGKGVIVAKTNEEAIKAVEEILEQKFGDAGERVVIEEFLD--GEEVSLLAFV 201 (423)
T ss_pred -HHhcCCCeEEEEECCCC---CCCCEEEECCHHHHHHHHHHHHHHhcCCCCCeEEEEECcc--CceEEEEEEE
Confidence 3568999 999998764 45799999999876421 24799999996 6788877763
No 65
>PRK12999 pyruvate carboxylase; Reviewed
Probab=99.43 E-value=7.7e-12 Score=136.60 Aligned_cols=224 Identities=15% Similarity=0.230 Sum_probs=145.8
Q ss_pred hhHHHHHHHhCCCeEEEeCCCCCc-------c--------------c------------cCCccEEEEccC--chhHHHH
Q 037279 26 QPSLLTKASERGIDLIPIDPIKPL-------V--------------E------------QGPFDCIVHKLY--GPDWTRQ 70 (327)
Q Consensus 26 ~~~l~~~~~~~gi~~~~ld~~~~l-------~--------------~------------q~~~Dvilhk~~--~~~~~~~ 70 (327)
.-+++++|++.|++.+.++.+.+. . . ...+|+|++-.. ++. . .
T Consensus 17 avri~raa~elGi~~Vav~s~~D~~a~~~~~ADe~~~i~~~~~~~~~Yldid~Ii~iAk~~~iDaI~PgyGflsE~-~-~ 94 (1146)
T PRK12999 17 AIRIFRAATELGIRTVAIYSEEDKLSLHRFKADEAYLIGEGKHPVRAYLDIDEIIRVAKQAGVDAIHPGYGFLSEN-P-E 94 (1146)
T ss_pred HHHHHHHHHHcCCEEEEEECCCCcCCchHHhCCEEEEcCCCCCcccCccCHHHHHHHHHHhCCCEEEeCCCccccC-H-H
Confidence 346889999999999977433110 0 0 113566666421 111 1 1
Q ss_pred HHHHHHhCCCCccc-CcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEE--EEcCccchhHHHhccCCCcEEEeecc
Q 037279 71 LQQFSSQNPNVPII-DSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQV--VVSEMKSLTSIEDLKLTFPVIAKPLV 147 (327)
Q Consensus 71 l~~~~~~~p~v~Vi-d~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~--~~~~~~~~~~~~~~~l~~P~VvKP~~ 147 (327)
+.+..++ .|++++ .++++++.+.||..+.+++.+ .|||+|++. .+.+.+++.+. ...++||+|+||..
T Consensus 95 ~a~~~e~-~Gi~fiGps~eai~~~~DK~~~r~~l~~-------~GVPv~P~~~~~v~s~eea~~~-a~~iGyPvVVKP~~ 165 (1146)
T PRK12999 95 FARACAE-AGITFIGPTAEVLRLLGDKVAARNAAIK-------AGVPVIPGSEGPIDDIEEALEF-AEEIGYPIMLKASA 165 (1146)
T ss_pred HHHHHHH-cCCcccCCCHHHHHHhCCHHHHHHHHHH-------CCCCCCCCcccCCCCHHHHHHH-HHHhCCCEEEEECC
Confidence 2222233 367755 679999999999999999998 699997655 46666555443 46789999999999
Q ss_pred CCCCccceeeEEEeChhhhccC-------------CCceEEEeccCCCCeEEEEEEECCE---EEEE-Eec-cCCCchhh
Q 037279 148 ADGSVKSHQMYLIFDSQGLESM-------------TAPFVLQEFVNHGGFIFKVYVAGMN---VKCV-KRK-SLPDISEE 209 (327)
Q Consensus 148 ~~Gs~~sh~m~lv~~~~~l~~l-------------~~p~vvQefI~h~g~d~KV~ViG~~---v~~~-~R~-S~~~~~~~ 209 (327)
|+ +|++|.++.++++|... +.++++|+||+. ++.+.|-++|+. ++.. .|- |..
T Consensus 166 Gg---GGrGv~vV~~~eEL~~a~~~a~~ea~~~fg~~~vlVEefI~g-~~~ieVqvl~D~~G~vv~l~erdcsvq----- 236 (1146)
T PRK12999 166 GG---GGRGMRIVRSEEELEEAFERAKREAKAAFGNDEVYLEKYVEN-PRHIEVQILGDKHGNVVHLYERDCSVQ----- 236 (1146)
T ss_pred CC---CCCCeEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCC-CeEEEEEEEEECCCCEEEEEcccccee-----
Confidence 75 46899999999887531 357999999974 577888787653 3222 221 110
Q ss_pred hhhhcCCccccccccccccCCcccccCCCCCCCCCccccccCCCC--cHHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCC
Q 037279 210 KLKSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVEMP--SQSFLCELARGMREALGLNLFN-FDVMRDARDS 286 (327)
Q Consensus 210 ~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~lA~~~~~~lGl~l~G-~Dvi~~~~~g 286 (327)
...+ +.... + +. ..++ ..+++.++|.++.+++|+.-+| +|++.+.+ |
T Consensus 237 ----------rr~q-k~ie~----a-------------P~-~~L~~~~~~~l~~~A~kl~~algy~G~gtVEflvd~d-g 286 (1146)
T PRK12999 237 ----------RRHQ-KVVEI----A-------------PA-PGLSEELRERICEAAVKLARAVGYVNAGTVEFLVDAD-G 286 (1146)
T ss_pred ----------ecCc-cEEEE----c-------------CC-CCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEECC-C
Confidence 0000 00000 0 00 0111 2467899999999999998555 99999864 4
Q ss_pred CcEEEEEEcCCCCC
Q 037279 287 NRYLIIDVNYFPGY 300 (327)
Q Consensus 287 ~~~~VidVN~fPg~ 300 (327)
.+|++|||.-++.
T Consensus 287 -~~yfIEINpRlqv 299 (1146)
T PRK12999 287 -NFYFIEVNPRIQV 299 (1146)
T ss_pred -CEEEEEEECCCCC
Confidence 3899999977753
No 66
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=99.37 E-value=4.6e-11 Score=118.26 Aligned_cols=180 Identities=16% Similarity=0.257 Sum_probs=123.3
Q ss_pred HHHHHHHHhCCCCcccC-cHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEE--cCccchhHHHhccCCCcEEEee
Q 037279 69 RQLQQFSSQNPNVPIID-SPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVV--SEMKSLTSIEDLKLTFPVIAKP 145 (327)
Q Consensus 69 ~~l~~~~~~~p~v~Vid-~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~--~~~~~~~~~~~~~l~~P~VvKP 145 (327)
+.+.+...++ |+..+- ++++++.++||+.+-+++.+ .|||+|+...- .+.+++.+ ....++||+|+||
T Consensus 89 ~~fae~~~~~-gl~fiGP~~~~i~~mgdK~~ar~~~~~-------aGVP~vpgs~~~~~~~ee~~~-~a~~iGyPVivKa 159 (449)
T COG0439 89 AAFAEACAEA-GLTFIGPSAEAIRRMGDKITARRLMAK-------AGVPVVPGSDGAVADNEEALA-IAEEIGYPVIVKA 159 (449)
T ss_pred HHHHHHHHHc-CCeeeCcCHHHHHHhhhHHHHHHHHHH-------cCCCcCCCCCCCcCCHHHHHH-HHHHcCCCEEEEE
Confidence 3344444443 677777 67889999999999999998 69999998721 12223322 2677899999999
Q ss_pred ccCCCCccceeeEEEeChhhhccC------------CCc-eEEEeccCCCCeEEEEEEECCEE-EE---EEec-cCCCch
Q 037279 146 LVADGSVKSHQMYLIFDSQGLESM------------TAP-FVLQEFVNHGGFIFKVYVAGMNV-KC---VKRK-SLPDIS 207 (327)
Q Consensus 146 ~~~~Gs~~sh~m~lv~~~~~l~~l------------~~p-~vvQefI~h~g~d~KV~ViG~~v-~~---~~R~-S~~~~~ 207 (327)
..|.| |.||.++.+.++|.+. ..| +++|+||+.. +=+=+-|+||.. .+ ..|- |++...
T Consensus 160 ~~GgG---g~G~r~v~~~~el~~a~~~~~~ea~~~fg~~~v~iEk~i~~~-rhievqv~gD~~g~~i~l~eRdcsiqrr~ 235 (449)
T COG0439 160 AAGGG---GRGMRVVRNEEELEAAFEAARGEAEAAFGNPRVYLEKFIEGP-RHIEVQVLGDGHGNVIHLGERDCSIQRRH 235 (449)
T ss_pred CCCCC---cccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEeeeeccCC-ceEEEEEEEcCcccEEEEEeccCCCcCCc
Confidence 98754 5899999999998532 244 9999999865 557888999876 22 3343 443211
Q ss_pred hhhhhhcCCccccccccccccCCcccccCCCCCCCCCccccccCCCC--cHHHHHHHHHHHHHHhCCcEeE-EEEEEeCC
Q 037279 208 EEKLKSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVEMP--SQSFLCELARGMREALGLNLFN-FDVMRDAR 284 (327)
Q Consensus 208 ~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~lA~~~~~~lGl~l~G-~Dvi~~~~ 284 (327)
.++... + |.+ .++ ....+.+.|.++.+.+|..-+| +.++.+.
T Consensus 236 ----------------qkviee----a-------------psp-~~~~e~r~~i~~~a~~a~~~~gY~gagtvEfl~~~- 280 (449)
T COG0439 236 ----------------QKVIEE----A-------------PSP-LLTEELREKIGEAAVRAAKLIGYRGAGTVEFLYDS- 280 (449)
T ss_pred ----------------cceeee----c-------------CCC-CCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeC-
Confidence 011110 0 111 111 1456778889999999988887 9999986
Q ss_pred CCCcEEEEEEcCC
Q 037279 285 DSNRYLIIDVNYF 297 (327)
Q Consensus 285 ~g~~~~VidVN~f 297 (327)
+| ++|++|+|.-
T Consensus 281 ~~-~~yfiEmN~R 292 (449)
T COG0439 281 NG-EFYFIEMNTR 292 (449)
T ss_pred CC-CEEEEEEecc
Confidence 44 3899999954
No 67
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=99.35 E-value=8.2e-11 Score=129.25 Aligned_cols=176 Identities=15% Similarity=0.211 Sum_probs=121.6
Q ss_pred CCCccc-CcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCe-EEEEcCccchhHHHhccCCCcEEEeeccCCCCcccee
Q 037279 79 PNVPII-DSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPN-QVVVSEMKSLTSIEDLKLTFPVIAKPLVADGSVKSHQ 156 (327)
Q Consensus 79 p~v~Vi-d~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~-~~~~~~~~~~~~~~~~~l~~P~VvKP~~~~Gs~~sh~ 156 (327)
-|++++ .++++++.+.||..+-++|.+ .|||+|+ +.++.+.+++.+. ...++||+|+||..|+ +|.+
T Consensus 97 ~Gi~~iGps~ea~~~~~DK~~ar~ll~~-------~GVPt~p~~~lv~s~dea~~~-a~~igyPvVVKP~~gg---GG~G 165 (1201)
T TIGR02712 97 AGIVFVGPTPEQIRKFGLKHTARELAEA-------AGVPLLPGTGLLSSLDEALEA-AKEIGYPVMLKSTAGG---GGIG 165 (1201)
T ss_pred cCCcEECCCHHHHHHhcCHHHHHHHHHH-------CCCCCCCceeecCCHHHHHHH-HHhcCCeEEEEECCCC---CCCC
Confidence 367654 678999999999999999998 6999855 7677776665443 4678999999999875 4589
Q ss_pred eEEEeChhhhccC-------------CCceEEEeccCCCCeEEEEEEECC---EEEEE-Eec-cCCCchhhhhhhcCCcc
Q 037279 157 MYLIFDSQGLESM-------------TAPFVLQEFVNHGGFIFKVYVAGM---NVKCV-KRK-SLPDISEEKLKSLKGFL 218 (327)
Q Consensus 157 m~lv~~~~~l~~l-------------~~p~vvQefI~h~g~d~KV~ViG~---~v~~~-~R~-S~~~~~~~~~~~~~g~~ 218 (327)
|.++.++++|... +.++++||||+. ++.+-|.+++| +++.. .|- |...
T Consensus 166 V~iv~~~eEL~~a~~~~~~~~~~~f~~~~vlVEefI~g-~~eveV~v~~Dg~g~vv~lg~rd~s~qr------------- 231 (1201)
T TIGR02712 166 MQKCDSAAELAEAFETVKRLGESFFGDAGVFLERFVEN-ARHVEVQIFGDGKGKVVALGERDCSLQR------------- 231 (1201)
T ss_pred EEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCC-CEEEEEEEEECCCCeEEEeeEEEeeeEe-------------
Confidence 9999999887521 246999999974 68899988875 33332 121 1100
Q ss_pred ccccccccccCCcccccCCCCCCCCCcccccc-CCCCcHHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCcEEEEEEcC
Q 037279 219 PFSRISNLIDNDKKVHDDGKKNSQGDEVDLES-VEMPSQSFLCELARGMREALGLN-LFNFDVMRDARDSNRYLIIDVNY 296 (327)
Q Consensus 219 ~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~VidVN~ 296 (327)
.++ +.-..+ +.+ ......+++.++|.++.++||+. ...+|++.+..+| .+||+|||.
T Consensus 232 --~~~-k~vee~-----------------Pap~l~~~~~~~l~~~a~~l~~aLgy~G~~~VEfild~~~g-~~y~lEVNp 290 (1201)
T TIGR02712 232 --RNQ-KVVEET-----------------PAPNLPPETRQALLAAAERLGEAVNYRSAGTVEFIYDEARD-EFYFLEVNT 290 (1201)
T ss_pred --cCc-cEEEEc-----------------CCCCCCHHHHHHHHHHHHHHHHhcCccceEEEEEEEECCCC-CEEEEEEEC
Confidence 000 000000 000 00112467899999999999987 4459999986445 489999998
Q ss_pred CCCC
Q 037279 297 FPGY 300 (327)
Q Consensus 297 fPg~ 300 (327)
-++-
T Consensus 291 Rlq~ 294 (1201)
T TIGR02712 291 RLQV 294 (1201)
T ss_pred CcCc
Confidence 7753
No 68
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=99.28 E-value=7.4e-10 Score=110.22 Aligned_cols=204 Identities=9% Similarity=0.058 Sum_probs=119.1
Q ss_pred CccEEEEccCchhHHHHHHHHHHhCCCCccc-CcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEE-EEcCccchhH
Q 037279 54 PFDCIVHKLYGPDWTRQLQQFSSQNPNVPII-DSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQV-VVSEMKSLTS 131 (327)
Q Consensus 54 ~~Dvilhk~~~~~~~~~l~~~~~~~p~v~Vi-d~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~-~~~~~~~~~~ 131 (327)
.+|.++.-...+.......++.+. |++++ .+.++++++.||..|.++|.+ .+||+|+++ .+.+.+++..
T Consensus 65 ~id~Vi~~~d~~l~~~~~~~l~~~--Gi~v~gps~~~a~~e~dK~~~k~~l~~-------~gIptp~~~~~~~~~~e~~~ 135 (435)
T PRK06395 65 NVDIVFVGPDPVLATPLVNNLLKR--GIKVASPTMEAAMIETSKMFMRYLMER-------HNIPGNINFNACFSEKDAAR 135 (435)
T ss_pred CCCEEEECCChHHHHHHHHHHHHC--CCcEECCCHHHHHHhhCHHHHHHHHHH-------CCcCCCcccceeCChHHHHH
Confidence 456666543222222223343322 78886 889999999999999999998 699998554 5655444333
Q ss_pred HHhccCCCcEEEeeccCCCCccceeeEEEeC----hhh-hc------cCCCceEEEeccCCCCeEEE--EEEECCEEEEE
Q 037279 132 IEDLKLTFPVIAKPLVADGSVKSHQMYLIFD----SQG-LE------SMTAPFVLQEFVNHGGFIFK--VYVAGMNVKCV 198 (327)
Q Consensus 132 ~~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~~----~~~-l~------~l~~p~vvQefI~h~g~d~K--V~ViG~~v~~~ 198 (327)
. ...++||+|+||..+. .|.+|.++.+ .++ +. +...++++|||+. |..+- +|+=|+.++..
T Consensus 136 ~-~~~~~~PvVVKP~~~s---ggkGV~v~~~~~~~~~ea~~~~~~~~~~~~~viIEEfl~--G~E~Svd~~~dg~~~~~l 209 (435)
T PRK06395 136 D-YITSMKDVAVKPIGLT---GGKGVKVTGEQLNSVDEAIRYAIEILDRDGVVLIEKKMT--GEEFSLQAFSDGKHLSFM 209 (435)
T ss_pred H-HHhhCCCEEEEeCCCC---CCCCeEEecCchhhHHHHHHHHHHHhCCCCcEEEEeecC--CceEEEEEEEcCCeEEEe
Confidence 2 2456999999998864 4578988853 222 21 1235799999995 55555 45545555321
Q ss_pred EeccCCCchhhhhhh-cCCccccccccccccCCcccccCCCCCCCCCcccc--ccCCCC--cHHHHHHHHHHHHHHhCC-
Q 037279 199 KRKSLPDISEEKLKS-LKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDL--ESVEMP--SQSFLCELARGMREALGL- 272 (327)
Q Consensus 199 ~R~S~~~~~~~~~~~-~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~l~~lA~~~~~~lGl- 272 (327)
+-. ...+. .+|..--+ + .+-|+..+. ..+.++ ..+++++++.++.++|+.
T Consensus 210 -----~~~--~d~~r~~~~d~gp~------t-----------GgmG~~s~~~~~~p~l~~~~~~~i~~i~~~~~~~l~~~ 265 (435)
T PRK06395 210 -----PIV--QDYKRAYEGDHGPN------T-----------GGMGSISDRDFSLPFLSKDAPERAKHILNDIIRAMKDE 265 (435)
T ss_pred -----ccc--ceeeecccCCCCCc------c-----------CCCccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 000 00000 00000000 0 001111000 001111 145678999999999994
Q ss_pred -----cEeEEEEEEeCCCCCcEEEEEEcCCCC
Q 037279 273 -----NLFNFDVMRDARDSNRYLIIDVNYFPG 299 (327)
Q Consensus 273 -----~l~G~Dvi~~~~~g~~~~VidVN~fPg 299 (327)
.++.++++.++ +| ++|||+|.-+|
T Consensus 266 ~~~~~G~l~~~~~lt~-~g--p~ViE~n~R~g 294 (435)
T PRK06395 266 NNPFKGIMYGQFMDTP-NG--VKVIEINARFA 294 (435)
T ss_pred CCceEEEEEEEEEEeC-CC--cEEEEEeCCCC
Confidence 35569999964 33 89999998888
No 69
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=99.24 E-value=5.6e-10 Score=107.77 Aligned_cols=228 Identities=16% Similarity=0.247 Sum_probs=140.1
Q ss_pred HHHHHHhCCCeEEEeCCCCC-cc-----------------------ccCCccEEEEccCchhH---HHHHH-HHHHhCCC
Q 037279 29 LLTKASERGIDLIPIDPIKP-LV-----------------------EQGPFDCIVHKLYGPDW---TRQLQ-QFSSQNPN 80 (327)
Q Consensus 29 l~~~~~~~gi~~~~ld~~~~-l~-----------------------~q~~~Dvilhk~~~~~~---~~~l~-~~~~~~p~ 80 (327)
-..+.++.|+.++.+|.+-. +. ..-..|.+++-+..+.. ...+. ....+.-|
T Consensus 21 ac~aLkeeg~~vvlvnsnpAti~td~e~AD~~y~eP~~~E~v~~Ii~~E~~Dailp~~ggqt~Ln~~~~l~e~g~l~~~g 100 (400)
T COG0458 21 ACKALKEEGYGVVLVNSNPATIMTDPELADKVYIEPITKEPVEKIIEKERPDAILPTLGGQTALNAALELKEKGVLEKYG 100 (400)
T ss_pred HHHHHHhcCCeEEEEcCCCccccCCchhcceeeeecCcHHHHHHHHHhcCcceeecccCCcchhhHHHHHHHhcchhhcC
Confidence 35677899999999997731 11 11246888887765421 11222 11222235
Q ss_pred Ccc-cCcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEEEeeccCCCCccceeeEE
Q 037279 81 VPI-IDSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKPLVADGSVKSHQMYL 159 (327)
Q Consensus 81 v~V-id~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~VvKP~~~~Gs~~sh~m~l 159 (327)
|.| ..++++|+++.||+.+.+++.+ .++++| +.+..+.+...+. ...++||+|+||..+-| +.+-.+
T Consensus 101 V~vvgs~~eaI~iaeDr~~fke~m~e-------igi~~P-~~~~~~~~e~~~~-~~~ig~PvIVrP~~~lG---G~G~~i 168 (400)
T COG0458 101 VEVVGSDPEAIEIAEDKKLFKEAMRE-------IGIPVP-SRIAHSVEEADEI-ADEIGYPVIVKPSFGLG---GSGGGI 168 (400)
T ss_pred CEEEecCHHHhhhhhhHHHHHHHHHH-------cCCCCC-ccccccHHHHhhh-HhhcCCCEEEecCcCCC---CCceeE
Confidence 654 5699999999999999999999 599999 5455554444332 57799999999999754 468889
Q ss_pred EeChhhhccC---------CCceEEEeccCCCCeEEEEEEECCEE-EEEEeccCCCchhhhhhhcCCccccccccccccC
Q 037279 160 IFDSQGLESM---------TAPFVLQEFVNHGGFIFKVYVAGMNV-KCVKRKSLPDISEEKLKSLKGFLPFSRISNLIDN 229 (327)
Q Consensus 160 v~~~~~l~~l---------~~p~vvQefI~h~g~d~KV~ViG~~v-~~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~ 229 (327)
++|+++|..+ -.+++++|+|. ++..+..-|+-|.. .+..=.++-|+.+. .+++.
T Consensus 169 ~~n~eel~~~~~~~l~~s~~~~vl~eesi~-G~ke~e~ev~rd~~~n~ivvc~men~dp~---------------gvhtg 232 (400)
T COG0458 169 AYNEEELEEIIEEGLRASPVEEVLIEESII-GWKEFEYEVVRDGKDNCIVVCNMENLDPM---------------GVHTG 232 (400)
T ss_pred EeCHHHHHHHHHhccccCccccceeeeeec-CceEEEEEEEEeCCCCEEEEEeCCccccc---------------ccccc
Confidence 9999998643 14789999996 34445444443221 01111111121110 00000
Q ss_pred CcccccCCCCCCCCCccccccCCCCc---HHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCcEEEEEEcCCCC
Q 037279 230 DKKVHDDGKKNSQGDEVDLESVEMPS---QSFLCELARGMREALGLN-LFNFDVMRDARDSNRYLIIDVNYFPG 299 (327)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~VidVN~fPg 299 (327)
. .....+..... ...++..+.++.+.+|.. =..|++..++++| +|||||||.-++
T Consensus 233 d--------------si~vapaqtl~d~eyq~~r~~~~~iir~igi~G~~niQ~av~~~~~-~~~viEvNpRvS 291 (400)
T COG0458 233 D--------------SITVAPAQTLTDKEYQMLRDAAIKVIREIGIEGGCNIQFAVDPGGG-ELYVIEINPRVS 291 (400)
T ss_pred c--------------eeeeccccccccHHHHHHHHHHHHHHHHhcccCCCceeEEEcCCCc-eEEEEEecCCcC
Confidence 0 00001111111 335667889999999998 2239999988766 599999994443
No 70
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=99.23 E-value=4.3e-10 Score=101.98 Aligned_cols=151 Identities=21% Similarity=0.244 Sum_probs=98.1
Q ss_pred cHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEEEeeccCCCCccceeeEEEeChhh
Q 037279 86 SPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKPLVADGSVKSHQMYLIFDSQG 165 (327)
Q Consensus 86 ~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~~~~~ 165 (327)
+++||+.|.||+.++..|.. .+++|.|..+.. ..--+|+||..|||+ .++....+...
T Consensus 105 S~~Ai~v~aDK~lty~aLr~--------aV~~p~t~e~~~-----------~~~k~ViKp~dgCgg---e~i~~~~~~pd 162 (307)
T COG1821 105 SPRAIRVAADKRLTYKALRD--------AVKQPPTREWAE-----------EPKKYVIKPADGCGG---EGILFGRDFPD 162 (307)
T ss_pred CHHHHhHhhhHHHHHHHHhh--------hccCCCcccccc-----------CCceEEecccccCCc---ceeeccCCCcc
Confidence 68999999999999999987 499999964322 222489999999977 34444444333
Q ss_pred hccCCCceEEEeccCCCCeEEEEEEECCEEEEEEeccCCCchhhhhhhcCCccccccccccccCCcccccCCCCCCCCCc
Q 037279 166 LESMTAPFVLQEFVNHGGFIFKVYVAGMNVKCVKRKSLPDISEEKLKSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDE 245 (327)
Q Consensus 166 l~~l~~p~vvQefI~h~g~d~KV~ViG~~v~~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~ 245 (327)
+ +++||||+....-.- ..+|+++. |- ..|. -++-|.. +.+..+ +|
T Consensus 163 ~------~i~qEfIeG~~lSVS-L~~GEkv~-------pL-svNr-----Qfi~~~~-~~~~y~------------gg-- 207 (307)
T COG1821 163 I------EIAQEFIEGEHLSVS-LSVGEKVL-------PL-SVNR-----QFIIFAG-SELVYN------------GG-- 207 (307)
T ss_pred h------hhHHHhcCCcceEEE-EecCCccc-------cc-eech-----hhhhhcc-ceeeec------------cC--
Confidence 2 999999975544444 66777773 21 1110 0001100 111111 01
Q ss_pred cccccCCCCcHHHHHHHHHHHHHHhC-Cc-EeEEEEEEeCCCCCcEEEEEEcCCCC
Q 037279 246 VDLESVEMPSQSFLCELARGMREALG-LN-LFNFDVMRDARDSNRYLIIDVNYFPG 299 (327)
Q Consensus 246 ~~~~~~~~~~~~~l~~lA~~~~~~lG-l~-l~G~Dvi~~~~~g~~~~VidVN~fPg 299 (327)
..+.+.+..+++-+.|.++.+.++ |. ++|||+|.. + .+||||||.-|-
T Consensus 208 --~~pi~he~k~~~~~~Ai~aVeci~Gl~GYVGVDlVls--D--~pYvIEINpR~T 257 (307)
T COG1821 208 --RTPIDHELKREAFEEAIRAVECIPGLNGYVGVDLVLS--D--EPYVIEINPRPT 257 (307)
T ss_pred --cCCCCcHHHHHHHHHHHHHHHhhccccceeeEEEEec--C--CcEEEEecCCCC
Confidence 112222346677899999999988 55 889999997 2 389999998886
No 71
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A.
Probab=99.20 E-value=4.4e-10 Score=98.41 Aligned_cols=168 Identities=18% Similarity=0.242 Sum_probs=102.4
Q ss_pred CcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEEEeeccCCCCccceeeEEEeChh
Q 037279 85 DSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKPLVADGSVKSHQMYLIFDSQ 164 (327)
Q Consensus 85 d~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~~~~ 164 (327)
|++.++..+.||=-...-|.++....+...+|-=.+..-.+..+. ...-.||+|+| .|++- .+-|=.++.|..
T Consensus 1 NSL~Siynf~dKpWvF~qLi~i~~~lG~e~FPLieQt~ypnh~em----~s~~~fPvVvK--vG~~h-~G~GKvkv~n~~ 73 (203)
T PF02750_consen 1 NSLHSIYNFCDKPWVFAQLIKIQKRLGPEKFPLIEQTYYPNHREM----LSAPRFPVVVK--VGHAH-AGMGKVKVDNQQ 73 (203)
T ss_dssp S-HHHHHHTTSHHHHHHHHHHHHHHHHTTTS-B---EEESSGGGG----CS-SSSSEEEE--ESS-S-TTTTEEEE-SHH
T ss_pred CcccchhhhcCCcHHHHHHHHHHHHhCCcccccceeeecCChhhh----ccCCCCCEEEE--Ecccc-CceeEEEEccHH
Confidence 789999999999765555544332222234443333333332222 23468999999 55433 345667999998
Q ss_pred hhccC-------CCceEEEeccCCCCeEEEEEEECCEEEEEEeccCC-CchhhhhhhcCCccccccccccccCCcccccC
Q 037279 165 GLESM-------TAPFVLQEFVNHGGFIFKVYVAGMNVKCVKRKSLP-DISEEKLKSLKGFLPFSRISNLIDNDKKVHDD 236 (327)
Q Consensus 165 ~l~~l-------~~p~vvQefI~h~g~d~KV~ViG~~v~~~~R~S~~-~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~ 236 (327)
.+.++ +.-+-++.||+. -+|+||--||+++.++.|+|+. ||.+ |.
T Consensus 74 ~~qDi~sll~~~~~Y~T~EPfId~-kyDirvqkIG~~ykA~~R~sis~nWK~----------------N~---------- 126 (203)
T PF02750_consen 74 DFQDIASLLAITKDYATTEPFIDA-KYDIRVQKIGNNYKAYMRTSISGNWKA----------------NT---------- 126 (203)
T ss_dssp HHHHHHHHHHHHTS-EEEEE---E-EEEEEEEEETTEEEEEEEEESSSTSST----------------TS----------
T ss_pred HHHHHHHHHHhcCceEEeeccccc-eeEEEEEEEcCeEEEEEEccccccccc----------------cc----------
Confidence 77644 345788899964 5999999999999999999974 4422 11
Q ss_pred CCCCCCCCccccccCCCCcHHHHHHHHHHHHHHh-CCcEeEEEEEEeCCCCCcEEEEEEcCC
Q 037279 237 GKKNSQGDEVDLESVEMPSQSFLCELARGMREAL-GLNLFNFDVMRDARDSNRYLIIDVNYF 297 (327)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~~~l-Gl~l~G~Dvi~~~~~g~~~~VidVN~f 297 (327)
|+ ...+..+.++..+.-..++++.+ ||+++++|+|... +|+ .||+|||..
T Consensus 127 ------gs---a~lEqi~~~~ryk~Wvd~~s~lfGGlDI~~v~ai~~k-dGk-e~Iievnds 177 (203)
T PF02750_consen 127 ------GS---AMLEQIAMTERYKLWVDECSELFGGLDICAVDAIHGK-DGK-EYIIEVNDS 177 (203)
T ss_dssp ------SS---EEEEEE---HHHHHHHHHHGGGGG--SEEEEEEEEET-TS--EEEEEEE-T
T ss_pred ------cc---hheeecCCChHHHHHHHHHHHHcCCccEEEEEEEEcC-CCC-EEEEEecCC
Confidence 11 11122334567788889999999 9999999999987 575 689999975
No 72
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=99.18 E-value=1.9e-10 Score=103.78 Aligned_cols=157 Identities=18% Similarity=0.251 Sum_probs=103.3
Q ss_pred CHHHHHHHHHhcccccCCCCcCCCeEEEE--cCccchhHHHhccCCCcEEEeeccCCCCccceeeEEEeChhhhccC---
Q 037279 95 NRISMLEVVTQLKLHFDNEKFGVPNQVVV--SEMKSLTSIEDLKLTFPVIAKPLVADGSVKSHQMYLIFDSQGLESM--- 169 (327)
Q Consensus 95 dR~~~~~~L~~~~~~~~~~~i~~P~~~~~--~~~~~~~~~~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~~~~~l~~l--- 169 (327)
||....+++.+ .++|+|+.... .+.+++.+. ...++||+++||..|. ++++|.+++++++|...
T Consensus 1 Dk~~~~~~~~~-------~gvp~~pg~~~~~~~~eea~~~-a~~iGyPVliKas~gg---GG~gm~iv~~~~eL~~~~~~ 69 (211)
T PF02786_consen 1 DKIRFRKLAKK-------LGVPVPPGSTVPISSVEEALEF-AEEIGYPVLIKASAGG---GGRGMRIVHNEEELEEAFER 69 (211)
T ss_dssp SHHHHHHHHHH-------TT-BBSSBESSSBSSHHHHHHH-HHHH-SSEEEEETTSS---TTTSEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHH-------CCCCcCCCCCCCCCCHHHHHHH-HHhcCCceEEeecccc---cccccccccchhhhhhhhhh
Confidence 78888889988 59999999876 665555443 5678999999999974 46899999999998632
Q ss_pred ----------CCceEEEeccCCCCeEEEEEEECCE---EEE-EEec-cCCCchhhhhhhcCCccccccccccccCCcccc
Q 037279 170 ----------TAPFVLQEFVNHGGFIFKVYVAGMN---VKC-VKRK-SLPDISEEKLKSLKGFLPFSRISNLIDNDKKVH 234 (327)
Q Consensus 170 ----------~~p~vvQefI~h~g~d~KV~ViG~~---v~~-~~R~-S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~ 234 (327)
+.++++++|+.. .+-+-|=|++|. +++ ..|- |.+. +++.. .
T Consensus 70 ~~~~s~~~fg~~~v~iek~i~~-~reiEvqvi~D~~gn~~~~~~~e~~~~~---------------hs~ds--------i 125 (211)
T PF02786_consen 70 AQRESPAAFGDGPVLIEKFIEG-AREIEVQVIRDGKGNVVHLGERECSEQR---------------HSQDS--------I 125 (211)
T ss_dssp HHHHHHHHHSTS-EEEEE--SS-EEEEEEEEEEETTSEEEEEEEEEEEEEE---------------TTEEE--------E
T ss_pred ccccCccccccceEEEeeehhh-hhhhhhhhhhccccceeeeeeecccccc---------------ccccc--------e
Confidence 479999999973 477888888763 332 2333 2110 11100 0
Q ss_pred cCCCCCCCCCccccccC-CCC--cHHHHHHHHHHHHHHhCCcE-eEEEEEEeCCCCCcEEEEEEcCCCC
Q 037279 235 DDGKKNSQGDEVDLESV-EMP--SQSFLCELARGMREALGLNL-FNFDVMRDARDSNRYLIIDVNYFPG 299 (327)
Q Consensus 235 ~~~~~~~~~~~~~~~~~-~~~--~~~~l~~lA~~~~~~lGl~l-~G~Dvi~~~~~g~~~~VidVN~fPg 299 (327)
...++ .++ ..+.|++.|.++++.+|+.= +.|=++.+..++ .+||+|||..-+
T Consensus 126 ------------~~~P~~~L~~~~~~~l~~~a~~ia~~l~~~G~~tvef~~~~~~~-~~y~lEvNpR~~ 181 (211)
T PF02786_consen 126 ------------EEAPAQTLSDEERQKLREAAKKIARALGYVGAGTVEFAVDPDDG-EFYFLEVNPRLQ 181 (211)
T ss_dssp ------------EEES-SSS-HHHHHHHHHHHHHHHHHTT-EEEEEEEEEEETTTT-EEEEEEEESS--
T ss_pred ------------eEeeccccchHHHHHHHHHHHHHHHhhCeeecceEEEEEccCcc-ceeeecccCCCC
Confidence 01111 111 24578899999999999984 459999986445 599999996654
No 73
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=99.14 E-value=9.6e-09 Score=103.49 Aligned_cols=101 Identities=15% Similarity=0.129 Sum_probs=77.1
Q ss_pred CCCccc-CcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCC-eEEEEcCccchhHHHhccCCCcEEEeeccCCCCcccee
Q 037279 79 PNVPII-DSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVP-NQVVVSEMKSLTSIEDLKLTFPVIAKPLVADGSVKSHQ 156 (327)
Q Consensus 79 p~v~Vi-d~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P-~~~~~~~~~~~~~~~~~~l~~P~VvKP~~~~Gs~~sh~ 156 (327)
-|++++ .+.++.++++||..|-++|.+ .+||+| ++..+.+.+++.+.+ ... +|+|+||..+. .|.+
T Consensus 92 ~Gi~v~Gps~~aa~le~dK~~~K~~l~~-------~gIpt~~~~~~~~~~~ea~~~~-~~~-~PvVVKP~~~a---ggkG 159 (486)
T PRK05784 92 EGFPVFGASSKCARIEKSKVWARELMWK-------YSIPGRLRYKVFYDVEEAAKFI-EYG-GSVAIKPARQA---GGKG 159 (486)
T ss_pred CCCCEECCcHHHHHHhcCHHHHHHHHHH-------cCcCCCccceEeCCHHHHHHHH-hhc-CCEEEeeCCCC---CCCC
Confidence 478765 788999999999999999998 699997 677777766665543 233 69999998764 4689
Q ss_pred eEEEeChhh---------h----cc----------CCCceEEEeccCCCCeEEEEEEECC
Q 037279 157 MYLIFDSQG---------L----ES----------MTAPFVLQEFVNHGGFIFKVYVAGM 193 (327)
Q Consensus 157 m~lv~~~~~---------l----~~----------l~~p~vvQefI~h~g~d~KV~ViG~ 193 (327)
|.++.+.++ + .. ...++++||||. |..+-|.++.+
T Consensus 160 V~iv~~~~e~~~~~~~ea~~~a~~~~~~~~~~~g~~~~~VlIEEfL~--G~E~SV~al~d 217 (486)
T PRK05784 160 VKVIADLQAYLSQEKREALTKSVNDIKEGSAYYKDVEPKILVEEKVD--GVEYTLQVLTD 217 (486)
T ss_pred EEEECChhHhcchhHHHHHHHHHHHHHHhHhhccCCCCeEEEEEccC--CeEEEEEEEEC
Confidence 999998652 1 11 135799999995 78888887754
No 74
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=99.10 E-value=9.1e-10 Score=96.22 Aligned_cols=138 Identities=18% Similarity=0.251 Sum_probs=74.7
Q ss_pred CCCeEEEEcCccchhHHHhccCCCcEEEeeccCCCCccceeeEEEeCh-hhhc--------cCCCceEEEeccCCC-CeE
Q 037279 116 GVPNQVVVSEMKSLTSIEDLKLTFPVIAKPLVADGSVKSHQMYLIFDS-QGLE--------SMTAPFVLQEFVNHG-GFI 185 (327)
Q Consensus 116 ~~P~~~~~~~~~~~~~~~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~~~-~~l~--------~l~~p~vvQefI~h~-g~d 185 (327)
.+|+|++..+.+.+.+..+.. +. +|+||+.|.| ++++.++... ..+. .-..|+++|+|++.- .=|
T Consensus 11 ~~P~T~vs~~~~~i~~f~~~~-~~-~VlKPl~g~g---G~gV~~i~~~~~n~~~i~e~~~~~~~~~~mvQ~flp~i~~GD 85 (173)
T PF02955_consen 11 LIPPTLVSRDKEEIRAFIEEH-GD-IVLKPLDGMG---GRGVFRISRDDPNLNSILETLTKNGERPVMVQPFLPEIKEGD 85 (173)
T ss_dssp CS--EEEES-HHHHHHHHHHH-SS-EEEEESS--T---TTT-EEE-TT-TTHHHHHHHHTTTTTS-EEEEE--GGGGG-E
T ss_pred cCcCEEEECCHHHHHHHHHHC-CC-EEEEECCCCC---CcCEEEEcCCCCCHHHHHHHHHhcCCccEEEEeccccccCCC
Confidence 369999999988877655222 23 9999999864 4677777763 2121 224589999999853 239
Q ss_pred EEEEEECCEEEEEEeccCCCchhhhhhhcCCccccccccccccCCcccccCCCCCCCCCccccccCCCCcHHHHHHHHHH
Q 037279 186 FKVYVAGMNVKCVKRKSLPDISEEKLKSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVEMPSQSFLCELARG 265 (327)
Q Consensus 186 ~KV~ViG~~v~~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~ 265 (327)
.|+++++++...+.||-.. .++++ +|...+ |. ....+ ++++..++|.+
T Consensus 86 kRii~~nG~~~~av~R~P~---~gd~R-----------~N~~~G-------------g~---~~~~~--lt~~e~~i~~~ 133 (173)
T PF02955_consen 86 KRIILFNGEPSHAVRRIPA---KGDFR-----------SNLAAG-------------GS---AEPAE--LTEREREICEQ 133 (173)
T ss_dssp EEEEEETTEE-SEEEEE-----SS-S--------------GGGT-------------SC---EEEEE----HHHHHHHHH
T ss_pred EEEEEECCEEhHHeecCCC---CCCce-----------eeeccC-------------Cc---eeecC--CCHHHHHHHHH
Confidence 9999999999865544221 11221 132221 11 11222 24455677777
Q ss_pred HHHHh---CCcEeEEEEEEeCCCCCcEEEEEEcCC
Q 037279 266 MREAL---GLNLFNFDVMRDARDSNRYLIIDVNYF 297 (327)
Q Consensus 266 ~~~~l---Gl~l~G~Dvi~~~~~g~~~~VidVN~f 297 (327)
+...| |+-++|+|+| |+ ++.|||-+
T Consensus 134 i~~~L~~~Gl~f~GiDvi-----g~--~l~EiNvt 161 (173)
T PF02955_consen 134 IGPKLREDGLLFVGIDVI-----GD--KLTEINVT 161 (173)
T ss_dssp HHHHHHHTT--EEEEEEE-----TT--EEEEEE-S
T ss_pred HHHHHhhcCcEEEEEecc-----cc--ceEEEecc
Confidence 77766 8889999999 22 57899965
No 75
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=99.10 E-value=8.8e-09 Score=98.58 Aligned_cols=224 Identities=21% Similarity=0.242 Sum_probs=146.7
Q ss_pred HHHHHHhCCCeEEEeCCCCCcc-ccCCccEEEEccCchh------------------H-HHHHHHHHHhCCCCcccCcHH
Q 037279 29 LLTKASERGIDLIPIDPIKPLV-EQGPFDCIVHKLYGPD------------------W-TRQLQQFSSQNPNVPIIDSPD 88 (327)
Q Consensus 29 l~~~~~~~gi~~~~ld~~~~l~-~q~~~Dvilhk~~~~~------------------~-~~~l~~~~~~~p~v~Vid~~~ 88 (327)
+..++...|+.+..+|++.+-. .|-.-+++.....|.. + ...+.. +..+ +.|.-+++
T Consensus 16 m~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~EfE~V~~~aL~~-l~~~--~~v~p~~~ 92 (375)
T COG0026 16 MALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITYEFENVPAEALEK-LAAS--VKVFPSPD 92 (375)
T ss_pred HHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEEeeccCCHHHHHH-HHhh--cCcCCCHH
Confidence 4568889999999999885321 1211133333222210 1 122222 2332 77889999
Q ss_pred HHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEEEeeccCCCCccceeeEEEeChhhhcc
Q 037279 89 SIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKPLVADGSVKSHQMYLIFDSQGLES 168 (327)
Q Consensus 89 ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~~~~~l~~ 168 (327)
++++..||+..=++|.+ .|++||++.++++.+++... ...++||.|+|...| |= +++|-.++.+.+++..
T Consensus 93 ~l~~~qdR~~eK~~l~~-------~Gi~va~~~~v~~~~el~~~-~~~~g~p~VlKtr~g-GY-DGkGQ~~i~~~~~~~~ 162 (375)
T COG0026 93 ALRIAQDRLVEKQFLDK-------AGLPVAPFQVVDSAEELDAA-AADLGFPAVLKTRRG-GY-DGKGQWRIRSDADLEL 162 (375)
T ss_pred HHHHHhhHHHHHHHHHH-------cCCCCCCeEEeCCHHHHHHH-HHHcCCceEEEeccc-cc-cCCCeEEeeCcccchh
Confidence 99999999999999998 69999999999998877664 367889999999986 44 8899999998877653
Q ss_pred C------CCceEEEeccCCCCeEEEEEEECCEE-EEEEeccCCCchhhhhhhcCCccccccccccccCCcccccCCCCCC
Q 037279 169 M------TAPFVLQEFVNHGGFIFKVYVAGMNV-KCVKRKSLPDISEEKLKSLKGFLPFSRISNLIDNDKKVHDDGKKNS 241 (327)
Q Consensus 169 l------~~p~vvQefI~h~g~d~KV~ViG~~v-~~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~ 241 (327)
. ..-+++++||+-. +.+.|.+.-+.- -++ .|+-..|++.+.
T Consensus 163 ~~~~~~~~~~~vlE~fV~F~-~EiSvi~aR~~~G~~~--------------------~yP~~eN~h~~g----------- 210 (375)
T COG0026 163 RAAGLAEGGVPVLEEFVPFE-REISVIVARSNDGEVA--------------------FYPVAENVHRNG----------- 210 (375)
T ss_pred hHhhhhccCceeEEeecccc-eEEEEEEEEcCCCCEE--------------------EecccceeeecC-----------
Confidence 1 1223999999854 667776662211 111 122112222111
Q ss_pred CCCcccc--ccCCCC--cHHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCcEEEEEEcCCCCCCC
Q 037279 242 QGDEVDL--ESVEMP--SQSFLCELARGMREALGLN-LFNFDVMRDARDSNRYLIIDVNYFPGYAK 302 (327)
Q Consensus 242 ~~~~~~~--~~~~~~--~~~~l~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~VidVN~fPg~~g 302 (327)
+|.. .+...+ .++..+++|.++.+.|+.- ++|+-+.+..+ | .++|.|+=--|=-.|
T Consensus 211 ---Il~~siaPa~i~~~~~~~A~~~a~~i~~~L~yvGVl~vE~Fv~~d-g-~llvNEiAPRvHNSG 271 (375)
T COG0026 211 ---ILRTSIAPARIPDDLQAQAEEMAKKIAEELDYVGVLAVEFFVTPD-G-ELLVNEIAPRVHNSG 271 (375)
T ss_pred ---EEEEEEecCcCCHHHHHHHHHHHHHHHHHcCceEEEEEEEEEECC-C-cEEEeeccCCCCCcc
Confidence 1111 111222 2457789999999999987 88999999864 4 489999875554433
No 76
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=99.04 E-value=1.1e-08 Score=95.57 Aligned_cols=228 Identities=19% Similarity=0.285 Sum_probs=147.6
Q ss_pred HHHHHHHhCCCeEEEeCC--CCCc---------------------cccCCccEEEEccCchhHHHHHHHHHHhCCCCccc
Q 037279 28 SLLTKASERGIDLIPIDP--IKPL---------------------VEQGPFDCIVHKLYGPDWTRQLQQFSSQNPNVPII 84 (327)
Q Consensus 28 ~l~~~~~~~gi~~~~ld~--~~~l---------------------~~q~~~Dvilhk~~~~~~~~~l~~~~~~~p~v~Vi 84 (327)
++.-+|-+.|++++.+|= +.|- .++-..|.|++-+-.- ....|.++- ..|..||
T Consensus 26 EvaIe~QRLG~eViAVDrY~~APAmqVAhrs~Vi~MlD~~al~avv~rekPd~IVpEiEAI-~td~L~elE--~~G~~VV 102 (394)
T COG0027 26 EVAIEAQRLGVEVIAVDRYANAPAMQVAHRSYVIDMLDGDALRAVVEREKPDYIVPEIEAI-ATDALVELE--EEGYTVV 102 (394)
T ss_pred HHHHHHHhcCCEEEEecCcCCChhhhhhhheeeeeccCHHHHHHHHHhhCCCeeeehhhhh-hHHHHHHHH--hCCceEc
Confidence 555678889999999992 2220 1123457777765322 234455543 3478899
Q ss_pred CcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEEEeeccCCCCccceeeEEEeChh
Q 037279 85 DSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKPLVADGSVKSHQMYLIFDSQ 164 (327)
Q Consensus 85 d~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~~~~ 164 (327)
....+.+.++||...-++..+- -|+||-++..+.+.+++.+. ...++||+||||+.+ | .+||=+++.+++
T Consensus 103 P~ArAt~ltMnRegiRrlAAee------LglpTs~Y~fa~s~~e~~~a-~~~iGfPcvvKPvMS--S-SGkGqsvv~~~e 172 (394)
T COG0027 103 PNARATKLTMNREGIRRLAAEE------LGLPTSKYRFADSLEELRAA-VEKIGFPCVVKPVMS--S-SGKGQSVVRSPE 172 (394)
T ss_pred cchHHHHhhhcHHHHHHHHHHH------hCCCCccccccccHHHHHHH-HHHcCCCeecccccc--c-CCCCceeecCHH
Confidence 9999999999997665555431 38999999999887776554 578999999999995 3 589999999999
Q ss_pred hhccC-----------CCceEEEeccCCCCeEEEEEEECCEEEEEEeccCCCchhhhhhhcCCccccccccccccCCccc
Q 037279 165 GLESM-----------TAPFVLQEFVNHGGFIFKVYVAGMNVKCVKRKSLPDISEEKLKSLKGFLPFSRISNLIDNDKKV 233 (327)
Q Consensus 165 ~l~~l-----------~~p~vvQefI~h~g~d~KV~ViG~~v~~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~ 233 (327)
++... ..-+++++||+ +||-+-.+ +.|.--++ +. |. .+.+- ..
T Consensus 173 ~ve~AW~~A~~g~R~~~~RVIVE~fv~---fd~EiTlL------tvr~~~~~----------~~--Fc----~PIGH-rq 226 (394)
T COG0027 173 DVEKAWEYAQQGGRGGSGRVIVEEFVK---FDFEITLL------TVRAVDGT----------GS--FC----APIGH-RQ 226 (394)
T ss_pred HHHHHHHHHHhcCCCCCCcEEEEEEec---ceEEEEEE------EEEEecCC----------CC--cC----CCccc-cc
Confidence 98633 34699999996 44544333 11221111 00 10 00000 00
Q ss_pred ccCCCCCCCCCcccccc-CCCCc--HHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCcEEEEEEcCCCCCCCCC
Q 037279 234 HDDGKKNSQGDEVDLES-VEMPS--QSFLCELARGMREALGLN-LFNFDVMRDARDSNRYLIIDVNYFPGYAKMP 304 (327)
Q Consensus 234 ~~~~~~~~~~~~~~~~~-~~~~~--~~~l~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~VidVN~fPg~~g~~ 304 (327)
.+ |...+-|. ..+.. -++-+.||.++.++||.- +|||.+++. |++.++-||---|-=.|+-
T Consensus 227 ~d-------gdY~ESWQP~~mS~~al~~A~~IA~~vt~aLGG~GiFGVElfv~---gDeV~FsEVSPRPHDTGmV 291 (394)
T COG0027 227 ED-------GDYRESWQPQEMSEAALEEAQSIAKRVTDALGGRGLFGVELFVK---GDEVIFSEVSPRPHDTGMV 291 (394)
T ss_pred CC-------CChhcccCccccCHHHHHHHHHHHHHHHHhhcCccceeEEEEEe---CCEEEEeecCCCCCCCceE
Confidence 00 00111222 12221 245689999999999865 999999996 3468999999988766654
No 77
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=99.00 E-value=3.5e-08 Score=91.93 Aligned_cols=187 Identities=19% Similarity=0.271 Sum_probs=115.7
Q ss_pred HHhCCCCcccCcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEEEeeccCCCCccc
Q 037279 75 SSQNPNVPIIDSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKPLVADGSVKS 154 (327)
Q Consensus 75 ~~~~p~v~Vid~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~VvKP~~~~Gs~~s 154 (327)
+++.++++++|| ...|||.+++.|.+... -.=-.|.|..+.+.+++.+.+... --+.+||..|+ .+
T Consensus 3 ~k~~~~i~~~n~-----~~~~Kw~v~~~L~~~~~----l~~~LP~T~~~~~~~~l~~~L~~y--~~vylKP~~Gs---~G 68 (262)
T PF14398_consen 3 LKKQKGIPFFNP-----GFFDKWEVYKALSRDPE----LRPYLPETELLTSFEDLREMLNKY--KSVYLKPDNGS---KG 68 (262)
T ss_pred hHhcCCCEEeCC-----CCCCHHHHHHHHHcCCc----chhhCCCceEcCCHHHHHHHHHHC--CEEEEEeCCCC---CC
Confidence 356689999998 46999999999987310 022389999998888887765221 14999999974 45
Q ss_pred eeeEEEeChhh-h---------------------c-----cC-CCceEEEeccCC---C--CeEEEEEEECC-----EEE
Q 037279 155 HQMYLIFDSQG-L---------------------E-----SM-TAPFVLQEFVNH---G--GFIFKVYVAGM-----NVK 196 (327)
Q Consensus 155 h~m~lv~~~~~-l---------------------~-----~l-~~p~vvQefI~h---~--g~d~KV~ViG~-----~v~ 196 (327)
.++..+.-.++ . . .+ ..++++||.|+- + -.|+||.|-=+ ++.
T Consensus 69 ~gI~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~yIiQq~I~l~~~~gr~fD~RvlvqK~~~G~W~vt 148 (262)
T PF14398_consen 69 KGIIRIEKKGGGYRIQYRNKKKNVRRTFSSLEELEQFLKELLGKRRYIIQQGIPLATYDGRPFDFRVLVQKNGSGKWQVT 148 (262)
T ss_pred ccEEEEEEeCCEEEEEEccCCceeEEEeCCHHHHHHHHHHhcCCCcEEEeCCccccccCCCeEEEEEEEEECCCCCEEEE
Confidence 56555544322 1 0 00 248999999983 2 47999999832 223
Q ss_pred E-EEeccCCC-chhhhhhhcCCccccccccccccCCcccccCCCCCCCCCcccccc----C-C-CCcHHHHH----HHHH
Q 037279 197 C-VKRKSLPD-ISEEKLKSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLES----V-E-MPSQSFLC----ELAR 264 (327)
Q Consensus 197 ~-~~R~S~~~-~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~-~~~~~~l~----~lA~ 264 (327)
+ +.|...++ +. +|++.++ .+..... . + ....+++. .+|.
T Consensus 149 g~~~Rva~~~~iv----------------TN~~~GG-------------~~~~~~~~l~~~~~~~~~~~~l~~~a~~ia~ 199 (262)
T PF14398_consen 149 GIVARVAKPGSIV----------------TNLSQGG-------------TALPFEEVLRQSEEAEKIREELEDLALEIAQ 199 (262)
T ss_pred EEEEEEcCCCCce----------------eccCCCc-------------eecCHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 3 45766554 11 2332211 1001000 0 0 00123444 4555
Q ss_pred HHHHHhCC--cEeEEEEEEeCCCCCcEEEEEEcCCCCCCCCCCh
Q 037279 265 GMREALGL--NLFNFDVMRDARDSNRYLIIDVNYFPGYAKMPGY 306 (327)
Q Consensus 265 ~~~~~lGl--~l~G~Dvi~~~~~g~~~~VidVN~fPg~~g~~~~ 306 (327)
.+.+.+|. .-+|+|+.+|. +|+ +++||||.-|+-..+..+
T Consensus 200 ~le~~~~~~~gElGiDl~iD~-~g~-iWliEvN~kP~~~~~~~~ 241 (262)
T PF14398_consen 200 ALEKHFGGHLGELGIDLGIDK-NGK-IWLIEVNSKPGKFDFRDI 241 (262)
T ss_pred HHHHhcCCceeEEEEEEEEcC-CCC-EEEEEEeCCCCcchhhcc
Confidence 55566674 56799999996 464 999999999997766653
No 78
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=98.93 E-value=9e-09 Score=89.99 Aligned_cols=150 Identities=19% Similarity=0.289 Sum_probs=95.0
Q ss_pred CCcCCCeEEEEcCccchhHHHhccCCCcEEEeeccCCCCccceeeEEEeChhhhccC-----CCceEEEeccCCCCeEEE
Q 037279 113 EKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKPLVADGSVKSHQMYLIFDSQGLESM-----TAPFVLQEFVNHGGFIFK 187 (327)
Q Consensus 113 ~~i~~P~~~~~~~~~~~~~~~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~~~~~l~~l-----~~p~vvQefI~h~g~d~K 187 (327)
.|||||++..+.+.+++.++ ...++||+|+|+..+ |. +++|..++.+.+++... ..++++|+||+. .+.+-
T Consensus 4 ~gip~~~~~~i~~~~~l~~a-~~~iG~P~vlK~~~~-GY-DGkGq~~i~~~~dl~~a~~~~~~~~~ilE~~v~f-~~EiS 79 (172)
T PF02222_consen 4 LGIPTAPYATIDSLEDLEEA-AESIGFPAVLKTRRG-GY-DGKGQFVIRSEEDLEKAWQELGGGPCILEEFVPF-DREIS 79 (172)
T ss_dssp TT--B-EEEEESSHHHHHHH-HHHHTSSEEEEESSS-SC-TTTTEEEESSGGGHHHHHHHTTTSCEEEEE---E-SEEEE
T ss_pred cCCCCCCeEEECCHHHHHHH-HHHcCCCEEEEccCc-Cc-CCCccEEECCHHHHHHHHHhcCCCcEEEEeccCC-cEEEE
Confidence 58999999999998887665 466899999998876 34 78999999999988643 469999999986 47777
Q ss_pred EEEECCEEEEEEeccCCCchhhhhhhcCCc-cccccccccccCCcccccCCCCCCCCCccccccCCCC--cHHHHHHHHH
Q 037279 188 VYVAGMNVKCVKRKSLPDISEEKLKSLKGF-LPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVEMP--SQSFLCELAR 264 (327)
Q Consensus 188 V~ViG~~v~~~~R~S~~~~~~~~~~~~~g~-~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~lA~ 264 (327)
|.|+-+.- |. ..|+-..|.+.+. .... .-.+..++ ...+++++|.
T Consensus 80 vivaR~~~--------------------G~~~~yp~~en~~~~~-il~~-----------s~~Pa~i~~~~~~~a~~ia~ 127 (172)
T PF02222_consen 80 VIVARDQD--------------------GEIRFYPPVENVHRDG-ILHE-----------SIAPARISDEVEEEAKEIAR 127 (172)
T ss_dssp EEEEEETT--------------------SEEEEEEEEEEEEETT-EEEE-----------EEESCSS-HHHHHHHHHHHH
T ss_pred EEEEEcCC--------------------CCEEEEcCceEEEECC-EEEE-----------EECCCCCCHHHHHHHHHHHH
Confidence 77763211 10 0111111111110 0000 00111222 2467899999
Q ss_pred HHHHHhCCc-EeEEEEEEeCCCCCcEEEEEEcCCCC
Q 037279 265 GMREALGLN-LFNFDVMRDARDSNRYLIIDVNYFPG 299 (327)
Q Consensus 265 ~~~~~lGl~-l~G~Dvi~~~~~g~~~~VidVN~fPg 299 (327)
++.+.|+.- +|+|.+.+.. +|+..||.|+-.-|-
T Consensus 128 ~i~~~l~~vGv~~VE~Fv~~-~g~~v~vNEiaPRpH 162 (172)
T PF02222_consen 128 KIAEALDYVGVLAVEFFVTK-DGDEVLVNEIAPRPH 162 (172)
T ss_dssp HHHHHHTSSEEEEEEEEEET-TSTEEEEEEEESS--
T ss_pred HHHHHcCcEEEEEEEEEEec-CCCEEEEEeccCCcc
Confidence 999999876 8899999986 354489999986554
No 79
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=98.86 E-value=1.4e-07 Score=88.68 Aligned_cols=223 Identities=15% Similarity=0.153 Sum_probs=132.8
Q ss_pred chhHHHHHHHhCCCeEEEeCCCCCccccCCccEEEE--------cc--CchhHH-HHHHHHHHhC---------------
Q 037279 25 IQPSLLTKASERGIDLIPIDPIKPLVEQGPFDCIVH--------KL--YGPDWT-RQLQQFSSQN--------------- 78 (327)
Q Consensus 25 ~~~~l~~~~~~~gi~~~~ld~~~~l~~q~~~Dvilh--------k~--~~~~~~-~~l~~~~~~~--------------- 78 (327)
+++.+.+-|.+.|.++--++.=.+..-++..+.++. |+ .+++|. +.+..+..+.
T Consensus 20 ntR~vveSA~klGf~V~sv~~y~~~Dl~~~a~~~l~~r~~~~~~rfe~~de~~li~~~~~~~~dvD~~ii~~sg~e~l~~ 99 (389)
T COG2232 20 NTRPVVESASKLGFEVYSVQYYDPADLPGDAISYLRERPGELLGRFENLDEQKLIEAAEDLAEDVDAPIIPFSGFEALRT 99 (389)
T ss_pred cchHhHHHHHhcCeEEEEeEeecccccccccceEEEecChhhcCcccCCCHHHHHHHHHhhhhhcceeeeeccccccccc
Confidence 577788999999998887775544433333344442 21 233342 2223332111
Q ss_pred -----CCCcccCcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEEEeeccCCCCcc
Q 037279 79 -----PNVPIIDSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKPLVADGSVK 153 (327)
Q Consensus 79 -----p~v~Vid~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~VvKP~~~~Gs~~ 153 (327)
.++.=.+|-..+..+-||+.++..|..+ |+|.|.+--++ . + ..-.+++|.||+.|.|..
T Consensus 100 ~g~~~~~v~~n~P~~~v~~~snk~~~~r~l~~l-------gmp~p~~~~~e------~-~-~~gekt~IlKPv~GaGG~- 163 (389)
T COG2232 100 SGELGCEVAGNEPEVKVVEASNKLKFYRKLEVL-------GMPEPSEKKIE------P-L-EEGEKTLILKPVSGAGGL- 163 (389)
T ss_pred cCccccccccCCcHHHHHHHHHHHhhhhhhhhc-------CCCCChhhhhh------h-h-hhcceeeEEeeccCCCce-
Confidence 0122235666999999999999999884 78888764331 1 1 123568999999986552
Q ss_pred ceeeEEEeChhhhccCCCceEEEeccCCCCeEEEEEEECC----EEEEEEeccCCCchhhhhhhcCCccccccccccccC
Q 037279 154 SHQMYLIFDSQGLESMTAPFVLQEFVNHGGFIFKVYVAGM----NVKCVKRKSLPDISEEKLKSLKGFLPFSRISNLIDN 229 (327)
Q Consensus 154 sh~m~lv~~~~~l~~l~~p~vvQefI~h~g~d~KV~ViG~----~v~~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~ 229 (327)
.-++.-.++.. ..++++|||| .|+-..|-+|++ .++++-+.-+- +.. ...+.|-|. .|+
T Consensus 164 ---~el~~~~Ee~~--~~~~i~Qefi--~G~p~Svs~is~g~~a~~la~N~QiI~-~~~----~~~~~f~Y~--GNl--- 226 (389)
T COG2232 164 ---VELVKFDEEDP--PPGFIFQEFI--EGRPVSVSFISNGSDALTLAVNDQIID-GLR----GEYSQFVYK--GNL--- 226 (389)
T ss_pred ---eeecccccccC--Ccceehhhhc--CCceeEEEEEecCcceEEEEEeeeeec-ccc----cccccceec--cCc---
Confidence 22222222221 3789999999 588899999988 33333343221 100 111112221 011
Q ss_pred CcccccCCCCCCCCCccccccCCCCcHHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCcEEEEEEcCCCCCCCCC
Q 037279 230 DKKVHDDGKKNSQGDEVDLESVEMPSQSFLCELARGMREALGLN-LFNFDVMRDARDSNRYLIIDVNYFPGYAKMP 304 (327)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~VidVN~fPg~~g~~ 304 (327)
.|- .....+++++||..+...|||- .-|||++..+. | +|||||| |=+.|.-
T Consensus 227 -----------------TP~--~~~~~ee~e~la~elV~~lgL~GsnGVDfvl~d~-g--pyViEVN--PR~qGt~ 278 (389)
T COG2232 227 -----------------TPF--PYEEVEEAERLAEELVEELGLVGSNGVDFVLNDK-G--PYVIEVN--PRIQGTL 278 (389)
T ss_pred -----------------CCC--cchhhHHHHHHHHHHHHHhccccccccceEeecC-C--cEEEEec--CcccchH
Confidence 111 1112368899999999999997 66899999753 3 8999999 6666544
No 80
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=98.77 E-value=1e-06 Score=83.18 Aligned_cols=193 Identities=16% Similarity=0.216 Sum_probs=114.6
Q ss_pred CcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcC-----------ccchhHHHhccCCCcEEEeeccCCCCcc
Q 037279 85 DSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSE-----------MKSLTSIEDLKLTFPVIAKPLVADGSVK 153 (327)
Q Consensus 85 d~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~-----------~~~~~~~~~~~l~~P~VvKP~~~~Gs~~ 153 (327)
|+.+....+.||..+.+++.+ .|||+|+.+.... .+++.+.+......++|+||..| + .
T Consensus 16 N~~~~~~l~~DK~~~~~l~~~-------~gi~vP~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~viKP~~G--~-~ 85 (285)
T PF14397_consen 16 NPREYYPLLDDKLLFKQLFRD-------YGIPVPEAIFNVGRDYFDLREQHSIEDLEEFLRKHAPDRFVIKPANG--S-G 85 (285)
T ss_pred CchhhccccCCHHHHHHHHHH-------hcCCCCceEEeccceEEecccccCHHHHHHHHHhccCCcEEEEeCCC--C-C
Confidence 889999999999999999988 6999999433111 12232322333357999999876 4 5
Q ss_pred ceeeEEEeChhh---------h----ccCC-CceEEEeccCC----------CCeEEEEEEE-CC---EEE-EEEeccCC
Q 037279 154 SHQMYLIFDSQG---------L----ESMT-APFVLQEFVNH----------GGFIFKVYVA-GM---NVK-CVKRKSLP 204 (327)
Q Consensus 154 sh~m~lv~~~~~---------l----~~l~-~p~vvQefI~h----------~g~d~KV~Vi-G~---~v~-~~~R~S~~ 204 (327)
++|+.++...++ + .... ..+++||+|.- +=-.+||.++ .+ .+. ++.|-+..
T Consensus 86 G~Gi~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~liqe~i~qh~~~~~~~~~svnTiRvvT~~~~~~~~~~~a~lRlg~~ 165 (285)
T PF14397_consen 86 GKGILVIDRRDGSEINRDISALYAGLESLGGKDYLIQERIEQHPELAALSPSSVNTIRVVTFLDDGEVEVLMAMLRLGRG 165 (285)
T ss_pred ccCEEEEEeecCcccccchhHHHHHHHhcCCccEEEEecccCCHHHHhhCCCCCCcEEEEEEEeCCeeEEEEEEEEeCCC
Confidence 678888776652 1 1111 27999999873 2247898887 32 222 35676521
Q ss_pred -----CchhhhhhhcCCccccccccccccCCcccccCCCCCCCCCcc--cc------ccCCCCcHHHHHHHHHHHHHHh-
Q 037279 205 -----DISEEKLKSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEV--DL------ESVEMPSQSFLCELARGMREAL- 270 (327)
Q Consensus 205 -----~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~--~~------~~~~~~~~~~l~~lA~~~~~~l- 270 (327)
|+..+... ..++-.+ .+...+ +. ...+... +| .....|.=+++.++|.++++.+
T Consensus 166 ~~~~DN~~~Ggi~---~~ID~~t--Gl~~~~-----~~--~~~~~~~~~HPdTg~~~~g~~IP~w~~~~~l~~~~~~~~p 233 (285)
T PF14397_consen 166 GSGVDNFHQGGIG---VGIDLAT--GLGRFA-----GY--DQDGERYEHHPDTGAPFSGFQIPNWDEILELAKEAHRKFP 233 (285)
T ss_pred CCcccccCCCCEE---EEEecCC--Cccccc-----cc--cCCCCEeeeCCCCCCccCCccCCCHHHHHHHHHHHHHHCC
Confidence 22222110 0011110 000000 00 0000000 11 1123454457889999998765
Q ss_pred CCcEeEEEEEEeCCCCCcEEEEEEcCC--CCCCC
Q 037279 271 GLNLFNFDVMRDARDSNRYLIIDVNYF--PGYAK 302 (327)
Q Consensus 271 Gl~l~G~Dvi~~~~~g~~~~VidVN~f--Pg~~g 302 (327)
++.+.|.||+++++ | +++||.|+. ||+.-
T Consensus 234 ~~~~iGWDvait~~-G--p~llE~N~~~~pgl~~ 264 (285)
T PF14397_consen 234 GLGYIGWDVAITED-G--PVLLEGNARWDPGLMI 264 (285)
T ss_pred CCCeEEEEEEEcCC-C--cEEEEeeCCCCCCcHh
Confidence 79999999999863 4 799999999 99863
No 81
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=98.77 E-value=4.4e-07 Score=88.05 Aligned_cols=166 Identities=14% Similarity=0.188 Sum_probs=102.5
Q ss_pred ceEEEEEeCCccccccchhHHHHHHHhCCCeEEEeCCCCC---ccccCCcc-EEEEc-c---Cchh--------------
Q 037279 9 RFRIGYALAPKKGQSLIQPSLLTKASERGIDLIPIDPIKP---LVEQGPFD-CIVHK-L---YGPD-------------- 66 (327)
Q Consensus 9 ~~~vG~~~~~~k~~~~~~~~l~~~~~~~gi~~~~ld~~~~---l~~q~~~D-vilhk-~---~~~~-------------- 66 (327)
..+||-..|.+ .-.++..|++.|+..+.+..... .....-.| .+... . .+..
T Consensus 18 ~~~i~~~~shs------aL~I~~gAkeeGf~ti~v~~~~~~~~y~~~~~~De~i~v~~~~di~~~~~~~~l~~~~~iiIp 91 (358)
T PRK13278 18 NITIATIGSHS------SLQILKGAKKEGFRTIAICKKKREVFYKRFPVADEFIIVDDFSDILNEAVQEKLREMNAILIP 91 (358)
T ss_pred cceEEEEeccc------HHHHHHHHHHCCCeEEEEEeCCCccccccccccceEEEEcchhhhcCHHHHHHHhhcCcEEEe
Confidence 34666666554 33578899999999888876543 11111111 11111 1 1100
Q ss_pred ---HHHH-HHHHHHhCCCCcccCcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEE
Q 037279 67 ---WTRQ-LQQFSSQNPNVPIIDSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVI 142 (327)
Q Consensus 67 ---~~~~-l~~~~~~~p~v~Vid~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~V 142 (327)
..+. ..+++. .-++++.-+.++++...||..+-++|.+ .|||+|+++ .+++ .+.||+|
T Consensus 92 ~gs~v~y~~~d~l~-~~~~p~~gn~~~l~~e~dK~~~k~~L~~-------aGIp~p~~~--~~~~--------~i~~PvI 153 (358)
T PRK13278 92 HGSFVAYLGLENVE-KFKVPMFGNREILRWEADRDKERKLLEE-------AGIRIPRKY--ESPE--------DIDRPVI 153 (358)
T ss_pred CCCcceeecHHHHH-HCCCCcCCCHHHHHHhcCHHHHHHHHHH-------cCCCCCCEe--CCHH--------HcCCCEE
Confidence 0000 122333 2357777788899999999999999998 699999973 3321 3579999
Q ss_pred EeeccCCCCccceeeEEEeChhhhcc----C--------CCceEEEeccCCCCeEEEEEEE--CCEE--EEEEec
Q 037279 143 AKPLVADGSVKSHQMYLIFDSQGLES----M--------TAPFVLQEFVNHGGFIFKVYVA--GMNV--KCVKRK 201 (327)
Q Consensus 143 vKP~~~~Gs~~sh~m~lv~~~~~l~~----l--------~~p~vvQefI~h~g~d~KV~Vi--G~~v--~~~~R~ 201 (327)
+||..| + +++++.++.+++++.. + ...+++||||...-.-+=+|+- -+++ .++-|+
T Consensus 154 VKp~~g--~-ggkGv~i~~s~~El~~~~~~l~~~~~~~~~~~~iIEEfI~G~e~sv~~f~s~~~~~~e~l~id~r 225 (358)
T PRK13278 154 VKLPGA--K-GGRGYFIAKSPEEFKEKIDKLIERGLITEVEEAIIQEYVVGVPYYFHYFYSPIKNRLELLGIDRR 225 (358)
T ss_pred EEeCCC--C-CCCCeEEeCCHHHHHHHHHHHHhccccCCCCeEEEEecCCCcEEEEEEEEeccCCeEEEEeecee
Confidence 999654 3 5799999999987742 1 3679999999643233335543 3554 234444
No 82
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=98.66 E-value=7.3e-07 Score=85.99 Aligned_cols=167 Identities=13% Similarity=0.192 Sum_probs=97.5
Q ss_pred hcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEEEeeccCCCCccceeeEEEeChhhhccC---
Q 037279 93 LHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKPLVADGSVKSHQMYLIFDSQGLESM--- 169 (327)
Q Consensus 93 ~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~~~~~l~~l--- 169 (327)
=+||..++.+|.+ +||++|+++. ++ ..+.||+||||..|.|. -|++..++.|.++|...
T Consensus 124 ~~dKk~~yk~L~~-------aGI~~Pk~~~--~p--------~eId~PVIVKp~~asG~-~srG~f~a~s~eEl~~~a~~ 185 (366)
T PRK13277 124 RTGEKNYYWLLEK-------AGIPYPKLFK--DP--------EEIDRPVIVKLPEAKRR-LERGFFTASSYEDFYEKSEE 185 (366)
T ss_pred ccCHHHHHHHHHH-------cCCCCceeec--Cc--------cccCccEEEEECCCCCc-cccCeEeeCCHHHHHHHHHh
Confidence 3677788888887 7999999985 21 35789999999998653 36899999999887522
Q ss_pred -C----------CceEEEeccCCCCeEEEEEEE--CCEE--EEEEeccCCCchhhhhhhcCCccccc-cccccccCC-cc
Q 037279 170 -T----------APFVLQEFVNHGGFIFKVYVA--GMNV--KCVKRKSLPDISEEKLKSLKGFLPFS-RISNLIDND-KK 232 (327)
Q Consensus 170 -~----------~p~vvQefI~h~g~d~KV~Vi--G~~v--~~~~R~S~~~~~~~~~~~~~g~~~f~-~~s~~~~~~-~~ 232 (327)
. ...++||||...-.-+=+|+- -+++ .++.||-.-|+ +|..... .+ .+..+. +.
T Consensus 186 l~~~g~I~~~~~~~~iIQEyI~G~ey~~d~F~s~l~g~ve~l~id~R~esn~--------dg~~r~pa~~-ql~~~~~p~ 256 (366)
T PRK13277 186 LIKAGVIDREDLKNARIEEYVIGAHFNFNYFYSPIRDRLELLGIDRRIQSNL--------DGFVRLPAPQ-QLKLNEEPR 256 (366)
T ss_pred hhhcCcccccccccceeEeccCCCEEEEEEEEeccCCcEEEEEEeecccccc--------ccccccChhh-hhhcccCCc
Confidence 1 345799999743333445553 5633 34444322222 1221111 00 000000 00
Q ss_pred cccCCCCCCCCCccccccCCCCcHHHHHHHHHHHHHHhC-------CcEeEEEEEEeCCCCCcEEEEEEcC
Q 037279 233 VHDDGKKNSQGDEVDLESVEMPSQSFLCELARGMREALG-------LNLFNFDVMRDARDSNRYLIIDVNY 296 (327)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~~~lG-------l~l~G~Dvi~~~~~g~~~~VidVN~ 296 (327)
... . |. .+....-...+.+.+++.++.++++ ..-|.+|.+++++ + .++|+|||.
T Consensus 257 ~vv--~----G~--~p~t~rEslle~v~e~ger~v~a~~~~~~pg~iGpf~lQ~iv~~d-~-~~~V~EInp 317 (366)
T PRK13277 257 YIE--V----GH--EPATIRESLLEKVFEIGEKFVEATKELYPPGIIGPFTLQTIVTPD-L-DFVVYDVAP 317 (366)
T ss_pred eEE--E----cC--ccccchHHHHHHHHHHHHHHHHHhhhhcCcccccceEEEEEEcCC-C-cEEEEEEcC
Confidence 000 0 00 0011110135677888888888877 4566799998753 4 489999994
No 83
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=98.66 E-value=1.5e-06 Score=85.81 Aligned_cols=171 Identities=14% Similarity=0.257 Sum_probs=117.9
Q ss_pred CCCcccC-cHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcC--ccchhHHHhccCCCcEEEeeccCCCCccce
Q 037279 79 PNVPIID-SPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSE--MKSLTSIEDLKLTFPVIAKPLVADGSVKSH 155 (327)
Q Consensus 79 p~v~Vid-~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~--~~~~~~~~~~~l~~P~VvKP~~~~Gs~~sh 155 (327)
.|+..|- |+.+|+-+.||..+-+++.. +|+|+=+-.--.. .+.+.+ ....++||+++|+..|+ ++.
T Consensus 94 ~Gi~FiGP~~~aIrdMG~K~~sk~im~~-------AgVp~vpG~~g~~qs~e~~~~-~a~eIgyPvMiKa~~GG---GGk 162 (670)
T KOG0238|consen 94 AGITFIGPPPSAIRDMGDKSTSKQIMKA-------AGVPLVPGYHGEDQSDEEAKK-VAREIGYPVMIKATAGG---GGK 162 (670)
T ss_pred cCCeEECCCHHHHHHhcchHHHHHHHHh-------cCCccccCcccccccHHHHHH-HHHhcCCcEEEEeccCC---CCc
Confidence 4777776 67899999999888888877 6887655433332 222211 27889999999999875 458
Q ss_pred eeEEEeChhhhccC-------------CCceEEEeccCCCCeEEEEEEECCEE---EEE-Eec-cCCCchhhhhhhcCCc
Q 037279 156 QMYLIFDSQGLESM-------------TAPFVLQEFVNHGGFIFKVYVAGMNV---KCV-KRK-SLPDISEEKLKSLKGF 217 (327)
Q Consensus 156 ~m~lv~~~~~l~~l-------------~~p~vvQefI~h~g~d~KV~ViG~~v---~~~-~R~-S~~~~~~~~~~~~~g~ 217 (327)
+|.++.+++++... +..++++.||+.+ |-+-|=|.||+. ++. .|- |+-.
T Consensus 163 GMria~~~~ef~~~~~~ak~Ea~~sFGdd~~llEkfi~np-RHiEvQv~gD~hGnav~l~ERdCSvQR------------ 229 (670)
T KOG0238|consen 163 GMRIAWSEEEFEEGLESAKQEAAKSFGDDGMLLEKFIDNP-RHIEVQVFGDKHGNAVHLGERDCSVQR------------ 229 (670)
T ss_pred ceEeecChHHHHHHHHHHHHHHHhhcCcchhhHHHhccCC-ceEEEEEEecCCCcEEEecccccchhh------------
Confidence 99999999776422 3579999999975 778999999987 111 121 2210
Q ss_pred cccccccccccCCcccccCCCCCCCCCccccccCCCC--cHHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCCcEEEEEE
Q 037279 218 LPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVEMP--SQSFLCELARGMREALGLNLFN-FDVMRDARDSNRYLIIDV 294 (327)
Q Consensus 218 ~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~lA~~~~~~lGl~l~G-~Dvi~~~~~g~~~~VidV 294 (327)
-+ .|+...+ |. +.++ ....|.+-|.++++++|..-+| |.+|.|+. + .+|++|+
T Consensus 230 ---Rn-QKiiEEa-----------------Pa-p~l~~e~R~~lgeaAv~aa~avgY~~aGTVEFi~D~~-~-~FyFmEm 285 (670)
T KOG0238|consen 230 ---RN-QKIIEEA-----------------PA-PNLPEETRRALGEAAVRAAKAVGYVGAGTVEFIVDSK-D-NFYFMEM 285 (670)
T ss_pred ---hh-hhhhhcC-----------------CC-CCCCHHHHHHHHHHHHHHHHhhCCcccceEEEEEcCC-C-cEEEEEe
Confidence 00 1221111 11 1122 2457889999999999999999 99999974 4 4999999
Q ss_pred cCC
Q 037279 295 NYF 297 (327)
Q Consensus 295 N~f 297 (327)
|.-
T Consensus 286 NTR 288 (670)
T KOG0238|consen 286 NTR 288 (670)
T ss_pred ece
Confidence 953
No 84
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=98.65 E-value=6.6e-08 Score=89.70 Aligned_cols=173 Identities=21% Similarity=0.266 Sum_probs=107.7
Q ss_pred CCcccCcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEEEeeccCCCC-ccce-ee
Q 037279 80 NVPIIDSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKPLVADGS-VKSH-QM 157 (327)
Q Consensus 80 ~v~Vid~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~VvKP~~~~Gs-~~sh-~m 157 (327)
.|+ +-+.+..+-+.+|=..|....++ |++.|+|+.++|..+.. ...+.||+|+||-.|.|. ..++ ..
T Consensus 100 ~v~-lp~w~~l~wlceKPllY~ra~el-------gl~~P~Ty~v~S~~d~~---~~el~FPvILKP~mgg~~~~~araKa 168 (415)
T COG3919 100 EVP-LPDWALLRWLCEKPLLYNRAEEL-------GLPYPKTYLVNSEIDTL---VDELTFPVILKPGMGGSVHFEARAKA 168 (415)
T ss_pred cCC-CCcHHHHHHHhhCcHHHHHHHHh-------CCCCcceEEecchhhhh---hhheeeeEEecCCCCCcceeehhhhe
Confidence 344 55678888899999999999884 99999999999855543 357999999999987422 1111 12
Q ss_pred EEEeChhhhccC---------CCceEEEeccCCCCeEEE---EEEECCEEEE--EEeccCCCchhhhhhhcCCccccccc
Q 037279 158 YLIFDSQGLESM---------TAPFVLQEFVNHGGFIFK---VYVAGMNVKC--VKRKSLPDISEEKLKSLKGFLPFSRI 223 (327)
Q Consensus 158 ~lv~~~~~l~~l---------~~p~vvQefI~h~g~d~K---V~ViG~~v~~--~~R~S~~~~~~~~~~~~~g~~~f~~~ 223 (327)
..+.|.++++.. ...+++||||+.+|---+ .++--++.++ ..|+-.. + +.+|.
T Consensus 169 ~~a~d~ee~k~a~~~a~eeigpDnvvvQe~IPGGgE~qfsyaAlw~~g~pvaeftarr~rq------y-----Pvdfg-- 235 (415)
T COG3919 169 FTAADNEEMKLALHRAYEEIGPDNVVVQEFIPGGGENQFSYAALWDKGHPVAEFTARRLRQ------Y-----PVDFG-- 235 (415)
T ss_pred eeccCHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccchHHHHHhCCCchhhhhcchhhc------C-----Ccccc--
Confidence 344455665421 236999999998764333 3344444433 1233210 0 11110
Q ss_pred cccccCCcccccCCCCCCCCCccccccCCCCcHHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCcEEEEEEcCCCC
Q 037279 224 SNLIDNDKKVHDDGKKNSQGDEVDLESVEMPSQSFLCELARGMREALGLN-LFNFDVMRDARDSNRYLIIDVNYFPG 299 (327)
Q Consensus 224 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~VidVN~fPg 299 (327)
. +. ...++++...+-+-|+++-+..+-+ +..||+-.|..+|. |.++|||--|+
T Consensus 236 ----y--------------ts----t~vevvDn~Q~i~aar~~L~si~htGlvevefK~D~RDGs-~KlldvNpRpw 289 (415)
T COG3919 236 ----Y--------------TS----TVVEVVDNQQVIQAARDFLESIEHTGLVEVEFKYDPRDGS-YKLLDVNPRPW 289 (415)
T ss_pred ----c--------------cc----EEEEecCcHHHHHHHHHHHHhhcccceEEEEEEecCCCCc-eeEEeecCCCc
Confidence 0 00 1122333333335555555555555 77899999998885 99999999997
No 85
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=98.57 E-value=4.5e-06 Score=86.23 Aligned_cols=168 Identities=13% Similarity=0.249 Sum_probs=116.1
Q ss_pred CCCcccC-cHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcC-ccchhHHH--hccCCCcEEEeeccCCCCccc
Q 037279 79 PNVPIID-SPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSE-MKSLTSIE--DLKLTFPVIAKPLVADGSVKS 154 (327)
Q Consensus 79 p~v~Vid-~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~-~~~~~~~~--~~~l~~P~VvKP~~~~Gs~~s 154 (327)
.|+..|- +++.++.+.||...-....+ .++|+=+.. .. .+++++.. .+..+||+++|-.+|+ ++
T Consensus 104 aGI~FIGP~~e~ld~~GdKv~Ar~~A~~-------agvPvipgt--~~~~~~~ee~~~fa~~~gyPvmiKA~~GG---GG 171 (1149)
T COG1038 104 AGITFIGPKPEVLDMLGDKVKARNAAIK-------AGVPVIPGT--DGPIETIEEALEFAEEYGYPVMIKAAAGG---GG 171 (1149)
T ss_pred cCCEEeCCCHHHHHHhccHHHHHHHHHH-------cCCCccCCC--CCCcccHHHHHHHHHhcCCcEEEEEccCC---Cc
Confidence 3788776 57899999999988776666 466642221 11 23333322 6789999999999975 46
Q ss_pred eeeEEEeChhhhccC-------------CCceEEEeccCCCCeEEEEEEECCEE---E-EEEec-cCCCchhhhhhhcCC
Q 037279 155 HQMYLIFDSQGLESM-------------TAPFVLQEFVNHGGFIFKVYVAGMNV---K-CVKRK-SLPDISEEKLKSLKG 216 (327)
Q Consensus 155 h~m~lv~~~~~l~~l-------------~~p~vvQefI~h~g~d~KV~ViG~~v---~-~~~R~-S~~~~~~~~~~~~~g 216 (327)
+||.++.++++|.+. +..+|++.||..+ +-+-|=++||+. + -..|- |.-.-
T Consensus 172 RGMR~vr~~~~l~~~~~~AksEAkaAFG~~eVyvEk~ve~p-kHIEVQiLgD~~GnvvHLfERDCSvQRR---------- 240 (1149)
T COG1038 172 RGMRVVRSEADLAEAFERAKSEAKAAFGNDEVYVEKLVENP-KHIEVQILGDTHGNVVHLFERDCSVQRR---------- 240 (1149)
T ss_pred cceeeecCHHHHHHHHHHHHHHHHHhcCCCcEEhhhhhcCc-ceeEEEEeecCCCCEEEEeecccchhhc----------
Confidence 999999999888532 3579999999975 678999999875 2 24442 32110
Q ss_pred ccccccccccccCCcccccCCCCCCCCCccccccC-CCC--cHHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCCcEEEE
Q 037279 217 FLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESV-EMP--SQSFLCELARGMREALGLNLFN-FDVMRDARDSNRYLII 292 (327)
Q Consensus 217 ~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~l~~lA~~~~~~lGl~l~G-~Dvi~~~~~g~~~~Vi 292 (327)
. .|. ++..+. .+. ...++.+-|.++++..|.--+| +.++++.+ |+ +|+|
T Consensus 241 -----h-QKV-------------------VE~APa~~L~~~~R~~ic~~Avkla~~~~Y~~AGTvEFLvd~~-~~-fyFI 293 (1149)
T COG1038 241 -----H-QKV-------------------VEVAPAPYLSPELRDEICDDAVKLARNIGYINAGTVEFLVDED-GK-FYFI 293 (1149)
T ss_pred -----c-cee-------------------EEecCCCCCCHHHHHHHHHHHHHHHHHcCCcccceEEEEEcCC-Cc-EEEE
Confidence 0 011 111111 111 2568899999999999999998 99999875 44 7899
Q ss_pred EEcC
Q 037279 293 DVNY 296 (327)
Q Consensus 293 dVN~ 296 (327)
|||-
T Consensus 294 EvNP 297 (1149)
T COG1038 294 EVNP 297 (1149)
T ss_pred EecC
Confidence 9993
No 86
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.55 E-value=1.1e-06 Score=83.12 Aligned_cols=217 Identities=15% Similarity=0.244 Sum_probs=132.7
Q ss_pred ccEEEEccCc------hhHHHHHHHHHHhCCCCcccCcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccc
Q 037279 55 FDCIVHKLYG------PDWTRQLQQFSSQNPNVPIIDSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKS 128 (327)
Q Consensus 55 ~Dvilhk~~~------~~~~~~l~~~~~~~p~v~Vid~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~ 128 (327)
.|+||.|-.. +.++..+..++ ..|++-||++.++...+||-....-|.++-.+.+...+|.=....--+
T Consensus 156 PdfVlirqhA~~mA~~~d~rslvig~q--yagiP~vNSl~SvynFcdkpwvf~Qlvki~~slG~e~fPli~qt~yPn--- 230 (488)
T KOG3895|consen 156 PDFVLIRQHAFSMALNEDYRSLVIGLQ--YAGIPSVNSLTSVYNFCDKPWVFAQLVKITKSLGPEKFPLIEQTFYPN--- 230 (488)
T ss_pred CCEEEEcccchhhccccchHHHHHHHH--hcCCcccchhHHHHHhccchHHHHHHHHHHHhcCccccccceeeecCC---
Confidence 4777766532 23344444443 347999999999999999976666665554444444555433322211
Q ss_pred hhHHHhccCCCcEEEeeccCCCCccceeeEEEeChhhhccC-------CCceEEEeccCCCCeEEEEEEECCEEEEEEec
Q 037279 129 LTSIEDLKLTFPVIAKPLVADGSVKSHQMYLIFDSQGLESM-------TAPFVLQEFVNHGGFIFKVYVAGMNVKCVKRK 201 (327)
Q Consensus 129 ~~~~~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~~~~~l~~l-------~~p~vvQefI~h~g~d~KV~ViG~~v~~~~R~ 201 (327)
.+.....-.||+|||--.|+ .+-|-..|.|.++|.++ +.-.-+|.||+. -.|+||=-||.++.+++|.
T Consensus 231 -HK~m~s~~tyPvVVkvghah---sGmGKiKV~Nh~dfqDi~svval~~Tyat~epFiDa-KYDiriQKIG~nYKaymRt 305 (488)
T KOG3895|consen 231 -HKEMLSQPTYPVVVKVGHAH---SGMGKIKVENHEDFQDIASVVALTKTYATAEPFIDA-KYDIRIQKIGHNYKAYMRT 305 (488)
T ss_pred -chhhccCCCCcEEEEecccc---cccceeeecchhhhHhHHHHHHHHhhhhhccccccc-cceeehhhhhhhHHHHhhh
Confidence 11123345699999954443 34455777888777654 345668889975 4899999999999999999
Q ss_pred cCC-CchhhhhhhcCCccccccccccccCCcccccCCCCCCCCCccccccCCCCcHHHHHHHHHHHHHHhC-CcEeEEEE
Q 037279 202 SLP-DISEEKLKSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVEMPSQSFLCELARGMREALG-LNLFNFDV 279 (327)
Q Consensus 202 S~~-~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~~~lG-l~l~G~Dv 279 (327)
|+. ||.+ |. |+.+ .+...+ .+.-+.-...+.+.+| |+++.||.
T Consensus 306 sIsgnWKt----------------Nt----------------GSam-LEQIam--seRyklwvdtcse~fGgldICav~a 350 (488)
T KOG3895|consen 306 SISGNWKT----------------NT----------------GSAM-LEQIAM--SERYKLWVDTCSEMFGGLDICAVKA 350 (488)
T ss_pred hhccCccc----------------Cc----------------hHHH-HHHHHH--HHHHHHHHHHHHHhcCCcceEEeee
Confidence 974 3422 11 1000 000111 2233455566667775 78999999
Q ss_pred EEeCCCCCcEEEEEEcC--CCCCCCCCC-hHHHHHHHHHHHH
Q 037279 280 MRDARDSNRYLIIDVNY--FPGYAKMPG-YESIMTDFFLQVL 318 (327)
Q Consensus 280 i~~~~~g~~~~VidVN~--fPg~~g~~~-~~~~l~~~~~~~~ 318 (327)
+... +|+. ||+|||. .|=+..-++ =..++.+.+..+.
T Consensus 351 lhsK-dGrd-~i~eV~d~smpliGeh~eeDrql~~~Lvvskm 390 (488)
T KOG3895|consen 351 LHSK-DGRD-YIIEVMDSSMPLIGEHQEEDRQLISELVVSKM 390 (488)
T ss_pred eecc-cchh-heeeeccccccccccchhHHHHHHHHHHHHHh
Confidence 9876 4664 7999997 455543332 2345555555544
No 87
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=98.48 E-value=1.9e-06 Score=86.19 Aligned_cols=170 Identities=12% Similarity=0.199 Sum_probs=116.7
Q ss_pred CCCcccC-cHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHH--HhccCCCcEEEeeccCCCCccce
Q 037279 79 PNVPIID-SPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSI--EDLKLTFPVIAKPLVADGSVKSH 155 (327)
Q Consensus 79 p~v~Vid-~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~--~~~~l~~P~VvKP~~~~Gs~~sh 155 (327)
-|++.|- |+.+|+.+.||...-.++.. .|+|+=+-..-. .++.... ....++||+++|...|+ ++.
T Consensus 98 aGlvfIGP~~~aI~aMGdK~~AK~l~~~-------AgVp~VPG~~g~-~qd~~~~~~~A~eiGyPVlIKAsaGG---GGK 166 (645)
T COG4770 98 AGLVFIGPSAGAIRAMGDKIAAKKLAAE-------AGVPTVPGYHGP-IQDAAELVAIAEEIGYPVLIKASAGG---GGK 166 (645)
T ss_pred CCcEEECCCHHHHHHhccHHHHHHHHHH-------cCCCccCCCCCc-ccCHHHHHHHHHhcCCcEEEEeccCC---CCC
Confidence 4777776 68899999999887777777 577754433221 1222221 27889999999998874 468
Q ss_pred eeEEEeChhhhccC-------------CCceEEEeccCCCCeEEEEEEECCEE---EE-EEec-cCCCchhhhhhhcCCc
Q 037279 156 QMYLIFDSQGLESM-------------TAPFVLQEFVNHGGFIFKVYVAGMNV---KC-VKRK-SLPDISEEKLKSLKGF 217 (327)
Q Consensus 156 ~m~lv~~~~~l~~l-------------~~p~vvQefI~h~g~d~KV~ViG~~v---~~-~~R~-S~~~~~~~~~~~~~g~ 217 (327)
+|-++.+.+++... +.-++++.|+..+ |-+-|=|+||+. ++ -.|- |+-.-
T Consensus 167 GMRvv~~~~e~~e~l~sarrEA~asFGddrv~iEkyl~~P-RHIEiQV~aD~HGNvv~LgERdCSlQRR----------- 234 (645)
T COG4770 167 GMRVVETPEEFAEALESARREAKASFGDDRVFIEKYLDKP-RHIEIQVFADQHGNVVHLGERDCSLQRR----------- 234 (645)
T ss_pred ceEeecCHHHHHHHHHHHHHHHHhhcCCceEehhhhcCCC-ceEEEEEEecCCCCEEEeeccccchhhh-----------
Confidence 99999999777522 3579999999987 678899999876 11 2232 33110
Q ss_pred cccccccccccCCcccccCCCCCCCCCccccccCCCC--cHHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCCcEEEEEE
Q 037279 218 LPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVEMP--SQSFLCELARGMREALGLNLFN-FDVMRDARDSNRYLIIDV 294 (327)
Q Consensus 218 ~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~lA~~~~~~lGl~l~G-~Dvi~~~~~g~~~~VidV 294 (327)
. +|....+ |.+ -++ ....|-+-|.+++++.|..=+| |-+|.+.+ ++ +|++|+
T Consensus 235 ----h-QKVIEEA-----------------PaP-~l~~~~R~amg~aAv~~a~avgY~gAGTVEFivd~~-~~-f~FlEM 289 (645)
T COG4770 235 ----H-QKVIEEA-----------------PAP-FLTEETREAMGEAAVAAAKAVGYVGAGTVEFIVDAD-GN-FYFLEM 289 (645)
T ss_pred ----c-chhhhcC-----------------CCC-CCCHHHHHHHHHHHHHHHHhcCCCcCceEEEEEcCC-Cc-EEEEEe
Confidence 0 1221111 111 111 1457889999999999999999 99999875 43 999999
Q ss_pred cC
Q 037279 295 NY 296 (327)
Q Consensus 295 N~ 296 (327)
|.
T Consensus 290 NT 291 (645)
T COG4770 290 NT 291 (645)
T ss_pred ec
Confidence 95
No 88
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=98.39 E-value=1.1e-05 Score=81.91 Aligned_cols=220 Identities=17% Similarity=0.293 Sum_probs=138.2
Q ss_pred ceEEEEEeCCccccccchhHHHHHHHhCCCeEEEeCCCC-CccccCCccEEEEccCchhHHHHHHHHHHhCCCCcccC-c
Q 037279 9 RFRIGYALAPKKGQSLIQPSLLTKASERGIDLIPIDPIK-PLVEQGPFDCIVHKLYGPDWTRQLQQFSSQNPNVPIID-S 86 (327)
Q Consensus 9 ~~~vG~~~~~~k~~~~~~~~l~~~~~~~gi~~~~ld~~~-~l~~q~~~Dvilhk~~~~~~~~~l~~~~~~~p~v~Vid-~ 86 (327)
.+.||=-++|. ..-+..+++++.|++++++++. |.- -+++. ..+.+..+. .|+..|- |
T Consensus 79 aY~iGk~l~PV-~AYL~ideii~iak~~~vdavH--PGYGFLSEr------------sdFA~av~~-----AGi~fiGPs 138 (1176)
T KOG0369|consen 79 AYLIGKGLPPV-GAYLAIDEIISIAKKHNVDAVH--PGYGFLSER------------SDFAQAVQD-----AGIRFIGPS 138 (1176)
T ss_pred ceecccCCCch-hhhhhHHHHHHHHHHcCCCeec--CCccccccc------------hHHHHHHHh-----cCceEeCCC
Confidence 45666655555 2334556788888887766442 221 11110 123333333 4788776 6
Q ss_pred HHHHHHhcCHHHHHHHHHhcccccCCCCcCCCe-E-EEEcCccchhHHHhccCCCcEEEeeccCCCCccceeeEEEeChh
Q 037279 87 PDSIERLHNRISMLEVVTQLKLHFDNEKFGVPN-Q-VVVSEMKSLTSIEDLKLTFPVIAKPLVADGSVKSHQMYLIFDSQ 164 (327)
Q Consensus 87 ~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~-~-~~~~~~~~~~~~~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~~~~ 164 (327)
++.++.+.||...-.+.-+ +|+|+-+ | -.+++.+.+.+. ....++|+|.|...|+ ++++|.++.+-+
T Consensus 139 peVi~~mGDKv~AR~~Ai~-------agVpvVPGTpgPitt~~EA~eF-~k~yG~PvI~KAAyGG---GGRGmRvVr~~e 207 (1176)
T KOG0369|consen 139 PEVIDSMGDKVAARAIAIE-------AGVPVVPGTPGPITTVEEALEF-VKEYGLPVIIKAAYGG---GGRGMRVVRSGE 207 (1176)
T ss_pred HHHHHHhhhHHHHHHHHHH-------cCCCccCCCCCCcccHHHHHHH-HHhcCCcEEEeecccC---CCcceEEeechh
Confidence 8899999999987776666 4665422 2 011222223222 5678999999988874 469999999987
Q ss_pred hhccC-------------CCceEEEeccCCCCeEEEEEEECCEE---E-EEEec-cCCCchhhhhhhcCCcccccccccc
Q 037279 165 GLESM-------------TAPFVLQEFVNHGGFIFKVYVAGMNV---K-CVKRK-SLPDISEEKLKSLKGFLPFSRISNL 226 (327)
Q Consensus 165 ~l~~l-------------~~p~vvQefI~h~g~d~KV~ViG~~v---~-~~~R~-S~~~~~~~~~~~~~g~~~f~~~s~~ 226 (327)
++++. +..++++.|++++ +-|-|-.+||+. + -+.|- |...- | .+.
T Consensus 208 ~vee~f~Ra~SEA~aaFGnG~~FvEkF~ekP-rHIEvQllgD~~GNvvHLyERDCSvQRR--------------H--QKV 270 (1176)
T KOG0369|consen 208 DVEEAFQRAYSEALAAFGNGTLFVEKFLEKP-RHIEVQLLGDKHGNVVHLYERDCSVQRR--------------H--QKV 270 (1176)
T ss_pred hHHHHHHHHHHHHHHhcCCceeeHHhhhcCc-ceeEEEEecccCCCEEEEeecccchhhh--------------h--cce
Confidence 77522 3579999999987 668999999876 2 23442 22100 0 011
Q ss_pred ccCCcccccCCCCCCCCCccccccC-CCCc--HHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCCcEEEEEEcCC
Q 037279 227 IDNDKKVHDDGKKNSQGDEVDLESV-EMPS--QSFLCELARGMREALGLNLFN-FDVMRDARDSNRYLIIDVNYF 297 (327)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~l~~lA~~~~~~lGl~l~G-~Dvi~~~~~g~~~~VidVN~f 297 (327)
++..++ .+|+ .+.+-.=|.++++..|..-+| +.+++|.. |+ +|+||||.-
T Consensus 271 -------------------VEiAPA~~Lp~~vR~~~~~davklAk~vgY~NAGTvEFLvD~~-g~-hYFIEvN~R 324 (1176)
T KOG0369|consen 271 -------------------VEIAPAKTLPPEVRDAILTDAVKLAKHVGYENAGTVEFLVDQK-GR-HYFIEVNPR 324 (1176)
T ss_pred -------------------eEecccccCCHHHHHHHHHHHHHHHHHhCcccCCceEEEEccC-CC-EEEEEecCc
Confidence 011111 2222 456677899999999999999 99999874 65 689999953
No 89
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=98.34 E-value=2.3e-06 Score=80.66 Aligned_cols=106 Identities=17% Similarity=0.251 Sum_probs=39.4
Q ss_pred CcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcC-ccchhHHHhccCCCcEEEeeccCCCCccceeeEEEeCh
Q 037279 85 DSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSE-MKSLTSIEDLKLTFPVIAKPLVADGSVKSHQMYLIFDS 163 (327)
Q Consensus 85 d~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~-~~~~~~~~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~~~ 163 (327)
|.+..-..+..|..+.+.|.+........-=..|+|..+.. ..++.......-.--+|+||..+ + .|+|+.++.+.
T Consensus 11 N~~p~~~~l~~K~~l~~~l~~~~~~~~~~~~~~p~t~~l~~~~~~~~~~~~~~~~~~wI~KP~~~--~-rG~GI~l~~~~ 87 (292)
T PF03133_consen 11 NHFPGSQELTRKDLLAKNLQRYRKKFPKEFDFYPETFILPQDYKEFLKYFEKNPKNLWIVKPSNG--S-RGRGIKLFNNL 87 (292)
T ss_dssp TSS--EEEE-----------------------------HHHHHHHHHHHHHTTS---EEEEES----------EEEES-H
T ss_pred ccCCCCchhhhhHHHHHHHHHHHhhcCCcccCCcceEecHHHHHHHHHHHhcCCCCEEEEecccc--C-CCCCceecCCH
Confidence 33333344455555555554421110001124688887753 12222222222223599999885 3 68899999999
Q ss_pred hhhcc----CCCceEEEeccCCC----C--eEEEEEEECC
Q 037279 164 QGLES----MTAPFVLQEFVNHG----G--FIFKVYVAGM 193 (327)
Q Consensus 164 ~~l~~----l~~p~vvQefI~h~----g--~d~KV~ViG~ 193 (327)
+.+.+ ...++++|+||+.+ | .|+|+||+=-
T Consensus 88 ~~i~~~~~~~~~~~vvQkYI~~PlLi~grKFDlR~yvlvt 127 (292)
T PF03133_consen 88 EQILRFSKNKNQPYVVQKYIENPLLIDGRKFDLRVYVLVT 127 (292)
T ss_dssp HHHHCCHCCTTS-EEEEE--SSB--BTTB-EEEEEEEEE-
T ss_pred HHHHHHhhhhhhhhhhhhccCCCeEEeeeeEEEEEEEEEe
Confidence 99885 46799999999863 4 6999998843
No 90
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=98.11 E-value=0.00045 Score=67.61 Aligned_cols=140 Identities=16% Similarity=0.300 Sum_probs=101.7
Q ss_pred hhHHHHHHHhCCCeEEEeCCCCCccccCCccEEEEccCchhHHHHHHHHHHhCCCCcccCcHH-HHHHhcCHHHHHHHHH
Q 037279 26 QPSLLTKASERGIDLIPIDPIKPLVEQGPFDCIVHKLYGPDWTRQLQQFSSQNPNVPIIDSPD-SIERLHNRISMLEVVT 104 (327)
Q Consensus 26 ~~~l~~~~~~~gi~~~~ld~~~~l~~q~~~Dvilhk~~~~~~~~~l~~~~~~~p~v~Vid~~~-ai~~~~dR~~~~~~L~ 104 (327)
...+++.|++.+++++.+=|+.||.. -....|.+ .|++|+=|.. +.++=.+|..+=.+|.
T Consensus 52 ~~~lv~fA~~~~idl~vVGPE~pL~~-----------------GvvD~l~~--~Gi~vFGPsk~AA~lE~SK~faK~fm~ 112 (428)
T COG0151 52 HEALVAFAKEKNVDLVVVGPEAPLVA-----------------GVVDALRA--AGIPVFGPTKAAAQLEGSKAFAKDFMK 112 (428)
T ss_pred HHHHHHHHHHcCCCEEEECCcHHHhh-----------------hhHHHHHH--CCCceeCcCHHHHHHHhhHHHHHHHHH
Confidence 45688889999999999988887753 12222222 3899998765 4555689999999999
Q ss_pred hcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEEEeeccCCCCccceeeEEEeChhhhccC-------------CC
Q 037279 105 QLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKPLVADGSVKSHQMYLIFDSQGLESM-------------TA 171 (327)
Q Consensus 105 ~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~~~~~l~~l-------------~~ 171 (327)
+ ++|||+.+-++++.+.+.+.+ ...+.|+|+||. |-..+.++.++.+.++.... ..
T Consensus 113 k-------~~IPta~y~~f~~~e~a~ayi-~~~g~piVVKad---GLaaGKGV~V~~~~eeA~~a~~~~l~~~~fg~~g~ 181 (428)
T COG0151 113 K-------YGIPTAEYEVFTDPEEAKAYI-DEKGAPIVVKAD---GLAAGKGVIVAMTLEEAEAAVDEMLEGNAFGSAGA 181 (428)
T ss_pred H-------cCCCcccccccCCHHHHHHHH-HHcCCCEEEecc---cccCCCCeEEcCCHHHHHHHHHHHHhhccccCCCC
Confidence 8 799999999999877776654 567899999973 33456899999998665321 14
Q ss_pred ceEEEeccCCCCeEEEEEEECCEE
Q 037279 172 PFVLQEFVNHGGFIFKVYVAGMNV 195 (327)
Q Consensus 172 p~vvQefI~h~g~d~KV~ViG~~v 195 (327)
.++++||+.-.-.-+-++|=|+++
T Consensus 182 ~VVIEEfL~GeE~S~~a~~DG~~v 205 (428)
T COG0151 182 RVVIEEFLDGEEFSLQAFVDGKTV 205 (428)
T ss_pred cEEEEecccceEEEEEEEEcCCeE
Confidence 599999996333344455556666
No 91
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=98.00 E-value=6.2e-05 Score=66.95 Aligned_cols=88 Identities=14% Similarity=0.175 Sum_probs=61.0
Q ss_pred CHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcE-EEeeccCCCCccceeeEEEeChhhhcc-----
Q 037279 95 NRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPV-IAKPLVADGSVKSHQMYLIFDSQGLES----- 168 (327)
Q Consensus 95 dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~-VvKP~~~~Gs~~sh~m~lv~~~~~l~~----- 168 (327)
+|..+=++|.+ ++|||+++.++.+.+++.+.+ ....+|. |+|+. |...+.++.++.+.++..+
T Consensus 2 SK~faK~fm~~-------~~IPTa~~~~f~~~~~A~~~l-~~~~~p~~ViKad---Gla~GKGV~i~~~~~eA~~~l~~~ 70 (194)
T PF01071_consen 2 SKSFAKEFMKR-------YGIPTAKYKVFTDYEEALEYL-EEQGYPYVVIKAD---GLAAGKGVVIADDREEALEALREI 70 (194)
T ss_dssp BHHHHHHHHHH-------TT-SB--EEEESSHHHHHHHH-HHHSSSEEEEEES---SSCTTTSEEEESSHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-------cCCCCCCeeEECCHHHHHHHH-HhcCCCceEEccC---CCCCCCEEEEeCCHHHHHHHHHHh
Confidence 57778888888 799999999999988776655 4457788 99975 3456789999999865421
Q ss_pred --------CCCceEEEeccCCCCeEEEEEEE--CCEE
Q 037279 169 --------MTAPFVLQEFVNHGGFIFKVYVA--GMNV 195 (327)
Q Consensus 169 --------l~~p~vvQefI~h~g~d~KV~Vi--G~~v 195 (327)
...++++|||+ .|..+.++++ |+++
T Consensus 71 ~~~~~fg~~~~~vvIEE~l--~G~E~S~~a~~dG~~~ 105 (194)
T PF01071_consen 71 FVDRKFGDAGSKVVIEEFL--EGEEVSLFALTDGKNF 105 (194)
T ss_dssp HTSSTTCCCGSSEEEEE-----SEEEEEEEEEESSEE
T ss_pred ccccccCCCCCcEEEEecc--CCeEEEEEEEEcCCeE
Confidence 13589999999 5777776655 5554
No 92
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=97.67 E-value=0.00013 Score=76.73 Aligned_cols=180 Identities=19% Similarity=0.294 Sum_probs=121.8
Q ss_pred CCcccC-cHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEEEeeccCCCCccceeeE
Q 037279 80 NVPIID-SPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKPLVADGSVKSHQMY 158 (327)
Q Consensus 80 ~v~Vid-~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~VvKP~~~~Gs~~sh~m~ 158 (327)
++.++- +|+.|...-||+...+.|++ .||..|++-.+.+.+++.. +...++||+++.|..-- .+-.|-
T Consensus 1017 ~~kilGTsP~~ID~AEnR~kFS~~Ld~-------i~v~Qp~Wkelt~~~eA~~-F~~~VgYP~lvRPSYVL---SGaAMn 1085 (1435)
T KOG0370|consen 1017 GVKILGTSPEMIDSAENRFKFSRMLDS-------IGVDQPAWKELTSLEEAKK-FAEKVGYPVLVRPSYVL---SGAAMN 1085 (1435)
T ss_pred CCeEecCChHhhhhhhhHHHHHHHHHH-------cCCCchhhhhhccHHHHHH-HHHhcCCceEeccccee---cchhhh
Confidence 566665 78999999999999999999 4999999988888666544 36789999999997541 134899
Q ss_pred EEeChhhhccC---------CCceEEEeccCCCCeEEEEEEEC--CEEEEEEeccCCCchhhhhhhcCCccccccccccc
Q 037279 159 LIFDSQGLESM---------TAPFVLQEFVNHGGFIFKVYVAG--MNVKCVKRKSLPDISEEKLKSLKGFLPFSRISNLI 227 (327)
Q Consensus 159 lv~~~~~l~~l---------~~p~vvQefI~h~g~d~KV~ViG--~~v~~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~ 227 (327)
+++++++|+.. +.|+++-.||+. ++.+-|=.++ +++. +.-.|.+- .|.+
T Consensus 1086 v~~~~~dl~~~L~~A~~vs~dhPVVisKfie~-AkEidvDAVa~~G~~~-~haiSEHv------------------EnAG 1145 (1435)
T KOG0370|consen 1086 VVYSESDLKSYLEQASAVSPDHPVVISKFIEG-AKEIDVDAVASDGKVL-VHAISEHV------------------ENAG 1145 (1435)
T ss_pred hhhcHHHHHHHHHHHhhcCCCCCEEhHHhhcc-cceechhhhccCCeEE-EEehhhhh------------------hccc
Confidence 99999998743 479999999984 5655554443 2332 22333221 0111
Q ss_pred cCCcccccCCCCCCCCCccccccCCCCc--HHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCcEEEEEEcC-----CCC
Q 037279 228 DNDKKVHDDGKKNSQGDEVDLESVEMPS--QSFLCELARGMREALGLN-LFNFDVMRDARDSNRYLIIDVNY-----FPG 299 (327)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~VidVN~-----fPg 299 (327)
-.+ |+ +++-..+..+.. -+.+++++.+++++|..+ =|++-+|..+ +++.|||.|. ||-
T Consensus 1146 VHS--------GD---Atlv~Ppq~l~~~t~~rik~i~~ki~~a~~itGPfN~Q~i~k~---n~lkVIECN~RaSRSFPF 1211 (1435)
T KOG0370|consen 1146 VHS--------GD---ATLVLPPQDLSADTLERIKDIAAKVAKALKITGPFNMQIIAKD---NELKVIECNVRASRSFPF 1211 (1435)
T ss_pred ccC--------Cc---eeEeCCchhcCHHHHHHHHHHHHHHHHHhcccCCceEEEEecC---CeEEEEEeeeeeeccccc
Confidence 100 11 111111111211 356899999999999998 7889999864 2589999994 666
Q ss_pred CCCCC
Q 037279 300 YAKMP 304 (327)
Q Consensus 300 ~~g~~ 304 (327)
..+.=
T Consensus 1212 vSKtl 1216 (1435)
T KOG0370|consen 1212 VSKTL 1216 (1435)
T ss_pred eehhc
Confidence 55443
No 93
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=97.52 E-value=0.00024 Score=69.76 Aligned_cols=90 Identities=14% Similarity=0.148 Sum_probs=65.4
Q ss_pred HHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccCC-CcEEEeeccCC-CCccceeeEEEeChhhhccC-----
Q 037279 97 ISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLT-FPVIAKPLVAD-GSVKSHQMYLIFDSQGLESM----- 169 (327)
Q Consensus 97 ~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~-~P~VvKP~~~~-Gs~~sh~m~lv~~~~~l~~l----- 169 (327)
+.+-++|.+ .|||||++.++.+.+++.+. ...++ ||+|+||..-. |...+-++.++.+.+++...
T Consensus 6 ~~aK~ll~~-------~GIpvp~~~~~~~~~ea~~~-~~~ig~~PvVvK~~~~~ggkg~~GGV~~~~~~~e~~~a~~~l~ 77 (386)
T TIGR01016 6 YQAKQIFAK-------YGIPVPRGYVATSVEEAEEI-AAKLGAGPVVVKAQVHAGGRGKAGGVKVAKSKEEARAAAEKLL 77 (386)
T ss_pred HHHHHHHHH-------cCCCCCCceeeCCHHHHHHH-HHHhCCCcEEEEecccCCCCccCceEEEeCCHHHHHHHHHHHh
Confidence 455567777 69999999999886665543 45688 99999998311 23244589999988776321
Q ss_pred C---------------CceEEEeccCCCCeEEEEEEECCEE
Q 037279 170 T---------------APFVLQEFVNHGGFIFKVYVAGMNV 195 (327)
Q Consensus 170 ~---------------~p~vvQefI~h~g~d~KV~ViG~~v 195 (327)
. ..+++|||+++ |+.+-|.+++|+.
T Consensus 78 ~~~~~~~~~~~~g~~~~~vlVEe~v~~-g~E~~v~i~~d~~ 117 (386)
T TIGR01016 78 GKELVTNQTDPLGQPVNKILIEEATDI-DKEYYLSIVIDRS 117 (386)
T ss_pred ccceeecccCCCCCEeeEEEEEECccC-CceEEEEEEEcCC
Confidence 1 25999999975 7899999998864
No 94
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=97.35 E-value=0.00053 Score=67.38 Aligned_cols=93 Identities=12% Similarity=0.072 Sum_probs=68.7
Q ss_pred CHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccC-CCcEEEeeccC-CCCccceeeEEEeChhhhccC---
Q 037279 95 NRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKL-TFPVIAKPLVA-DGSVKSHQMYLIFDSQGLESM--- 169 (327)
Q Consensus 95 dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l-~~P~VvKP~~~-~Gs~~sh~m~lv~~~~~l~~l--- 169 (327)
+.+.+-++|.+ .|||+|++.++.+.+++.+. ...+ +||+|+||..- .|.+.+.++.+..+++++...
T Consensus 4 ~e~~ak~lL~~-------~gIpvp~~~~~~~~~ea~~~-a~~i~g~PvVvK~~~~~ggk~~~GGV~l~~~~~e~~~a~~~ 75 (388)
T PRK00696 4 HEYQAKELFAK-------YGVPVPRGIVATTPEEAVEA-AEELGGGVWVVKAQVHAGGRGKAGGVKLAKSPEEAREFAKQ 75 (388)
T ss_pred CHHHHHHHHHH-------cCCCCCCCeeeCCHHHHHHH-HHHcCCCcEEEEEeeCCCCCcccccEEEcCCHHHHHHHHHH
Confidence 45566778887 79999999999998776554 3557 99999999742 233466799999888776321
Q ss_pred -------------C-C---ceEEEeccCCCCeEEEEEEECCEEE
Q 037279 170 -------------T-A---PFVLQEFVNHGGFIFKVYVAGMNVK 196 (327)
Q Consensus 170 -------------~-~---p~vvQefI~h~g~d~KV~ViG~~v~ 196 (327)
. . .+++|+|+++ |+.+-+.+..|..+
T Consensus 76 i~~~~~~~~~~~~~g~~~~gvlVe~~~~~-~~E~~vg~~~D~~f 118 (388)
T PRK00696 76 ILGMTLVTHQTGPKGQPVNKVLVEEGADI-AKEYYLSIVLDRAT 118 (388)
T ss_pred hhccceeeeccCCCCCEEeEEEEEeccCC-CceEEEEEEEcCCC
Confidence 0 1 3899999975 68888888877653
No 95
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=96.97 E-value=0.1 Score=47.98 Aligned_cols=180 Identities=15% Similarity=0.211 Sum_probs=102.9
Q ss_pred CcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEEEeeccCCCCccceeeEEEeCh-
Q 037279 85 DSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKPLVADGSVKSHQMYLIFDS- 163 (327)
Q Consensus 85 d~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~~~- 163 (327)
|.-.-...|.||+..-..+++.. +...-+|-..+..+.+++.- ..|.-++|+||..|||+ ..+..-.+.
T Consensus 10 ~~~~~~~~~~DK~~VR~yv~~~~----g~~~l~pll~v~~~~~~i~~---~~Lp~~fViK~nhgsg~---~~i~~dk~~~ 79 (239)
T PF14305_consen 10 DRNPLFTKLADKYAVREYVEEKI----GEEYLPPLLGVYDNPDDIDF---DSLPDKFVIKPNHGSGS---NIIVRDKSKL 79 (239)
T ss_pred CCCccceecchHHHHHHHHHHhC----CCceECceeecCCChhhhhh---hcCCCCEEEEEecCCCc---EEEEeCCccc
Confidence 34445667889998888887621 11244555555555555532 45677999999998654 233332221
Q ss_pred --hhhc---------------------cCCCceEEEeccCCC-C---eEEEEEEECCEEEEE---EeccCCCchhhhhhh
Q 037279 164 --QGLE---------------------SMTAPFVLQEFVNHG-G---FIFKVYVAGMNVKCV---KRKSLPDISEEKLKS 213 (327)
Q Consensus 164 --~~l~---------------------~l~~p~vvQefI~h~-g---~d~KV~ViG~~v~~~---~R~S~~~~~~~~~~~ 213 (327)
..+. .+.+-+++++|+... | .|||+||.+|++... ..+ -.+-..+-+..
T Consensus 80 d~~~~~~~~~~wl~~~~~~~~~E~~Y~~i~prIivE~~l~~~~~~~~~DYKf~cF~G~~~~i~v~~~r-~~~~~~~~yd~ 158 (239)
T PF14305_consen 80 DIEEAKKKLNRWLKKDYYYQSREWHYKNIKPRIIVEELLEDEDGKIPRDYKFFCFNGKPKFIQVDSDR-FGNHKRNFYDR 158 (239)
T ss_pred CHHHHHHHHHHHhhhccccccccccCcCCCceEEEEeccccCCCCCcceEEEEEECCEEEEEEEEeCC-CCCeEEEEECc
Confidence 1111 112459999999987 4 699999999987432 222 11110000000
Q ss_pred cCCccccccccccccCCcccccCCCCCCCCCccccccCCCCc-HHHHHHHHHHHHHHhCCcEeEEEEEEeCCCCCcEEEE
Q 037279 214 LKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVEMPS-QSFLCELARGMREALGLNLFNFDVMRDARDSNRYLII 292 (327)
Q Consensus 214 ~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~lA~~~~~~lGl~l~G~Dvi~~~~~g~~~~Vi 292 (327)
.--..+|. ++++ .....+.|. -++|-++|.++++- ..+.-||+-..+ | ..|+=
T Consensus 159 dw~~l~~~--~~~~-------------------~~~~~~kP~~l~emi~iA~~Ls~~--f~fvRVDlY~~~--~-~iyFG 212 (239)
T PF14305_consen 159 DWNRLPFR--SDYP-------------------PDEDIPKPKNLEEMIEIAEKLSKG--FPFVRVDLYNVD--G-KIYFG 212 (239)
T ss_pred ccCCCccc--cCCC-------------------CCCCCCCChhHHHHHHHHHHHccC--CCEEEEEEEEeC--C-cEEEE
Confidence 00001110 0111 001112222 35788999999887 457889999874 3 38999
Q ss_pred EEcCCCCCC
Q 037279 293 DVNYFPGYA 301 (327)
Q Consensus 293 dVN~fPg~~ 301 (327)
|+=-+||-.
T Consensus 213 ElTf~p~~G 221 (239)
T PF14305_consen 213 ELTFTPGAG 221 (239)
T ss_pred eeecCCCCc
Confidence 999999955
No 96
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=96.92 E-value=0.0034 Score=62.61 Aligned_cols=147 Identities=18% Similarity=0.280 Sum_probs=92.7
Q ss_pred chhHHHHHHHhCCCeEEEeCCCCC-c-----ccc-CCccEEEEccCchhH-------HHHHHHHHHhCCCCcccCcHHHH
Q 037279 25 IQPSLLTKASERGIDLIPIDPIKP-L-----VEQ-GPFDCIVHKLYGPDW-------TRQLQQFSSQNPNVPIIDSPDSI 90 (327)
Q Consensus 25 ~~~~l~~~~~~~gi~~~~ld~~~~-l-----~~q-~~~Dvilhk~~~~~~-------~~~l~~~~~~~p~v~Vid~~~ai 90 (327)
+...|.+..+++|+..+..|++.- + -.+ .++|+|..|+.+... ...+++|... .+++++|+ +.
T Consensus 201 Ef~~f~~~f~~~G~~~vI~d~~~L~y~~g~L~~~~~~ID~VyRR~Vt~e~l~~~d~~~~li~Ay~~~--av~~vgsf-rs 277 (445)
T PF14403_consen 201 EFEVFQRLFEEHGYDCVICDPRDLEYRDGRLYAGGRPIDAVYRRFVTSELLERYDEVQPLIQAYRDG--AVCMVGSF-RS 277 (445)
T ss_pred hHHHHHHHHHHcCCceEecChHHceecCCEEEECCEeeehhhHhhhhHHhhhccccchHHHHHHhcC--CeEEecch-hh
Confidence 344688999999999999998842 1 112 278999999965322 2334455333 59999998 56
Q ss_pred HHhcCHHHHHHHHHh-cccc----cCC--CCcCCCeEEEEcCc--------cchhHH-H-hccCCCcEEEeeccCCCCcc
Q 037279 91 ERLHNRISMLEVVTQ-LKLH----FDN--EKFGVPNQVVVSEM--------KSLTSI-E-DLKLTFPVIAKPLVADGSVK 153 (327)
Q Consensus 91 ~~~~dR~~~~~~L~~-~~~~----~~~--~~i~~P~~~~~~~~--------~~~~~~-~-~~~l~~P~VvKP~~~~Gs~~ 153 (327)
.+++||.. ..+|.. .... +.. -.=.+|-|..+... .++.+. . ... -+|+||.-+. +
T Consensus 278 ~l~hnK~i-FaiL~d~~~~~~Lt~ee~~~I~~HvP~T~~l~~~~~~~~g~~~dL~~~~~a~r~---~lVLKP~D~Y---g 350 (445)
T PF14403_consen 278 QLLHNKII-FAILHDERTTAFLTAEERAFIRRHVPWTRLLTAGRTTYQGEDVDLVEFAIANRD---RLVLKPNDEY---G 350 (445)
T ss_pred hhhhhhHH-HHHhcChhhcccCCHHHHHHHHHhCCceEEEcCccccccccchhHHHHHHhchh---cEEecccccc---C
Confidence 78899954 344432 1100 000 11357889888761 122222 2 222 4999999875 4
Q ss_pred ceeeEEEeCh------hhhcc-CCCceEEEeccCC
Q 037279 154 SHQMYLIFDS------QGLES-MTAPFVLQEFVNH 181 (327)
Q Consensus 154 sh~m~lv~~~------~~l~~-l~~p~vvQefI~h 181 (327)
|||+.+=.+. +.|.+ +..|+++|||+.-
T Consensus 351 g~GV~~G~e~~~eeW~~~l~~a~~~~yilQe~v~~ 385 (445)
T PF14403_consen 351 GKGVYIGWETSPEEWEAALEEAAREPYILQEYVRP 385 (445)
T ss_pred CCCeEECCcCCHHHHHHHHHHHhcCCcEEEEEecC
Confidence 5888876554 22333 4679999999975
No 97
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=96.63 E-value=0.022 Score=63.01 Aligned_cols=185 Identities=15% Similarity=0.221 Sum_probs=115.5
Q ss_pred HHHHhCCCCcccCcH-HHHHHhcCHHHHHHHHHhcccc---cCCCCcCCCeEEE----EcCccc---------hhHHH--
Q 037279 73 QFSSQNPNVPIIDSP-DSIERLHNRISMLEVVTQLKLH---FDNEKFGVPNQVV----VSEMKS---------LTSIE-- 133 (327)
Q Consensus 73 ~~~~~~p~v~Vid~~-~ai~~~~dR~~~~~~L~~~~~~---~~~~~i~~P~~~~----~~~~~~---------~~~~~-- 133 (327)
+.+.++ ++..|-|+ .+...+.||..+.-+.+.+..+ =.+.+|.++..-- +.=+++ .++.+
T Consensus 156 e~L~~~-~IiFiGPP~~aM~sLGDKI~STIvAQsa~vPtlpWSGS~v~~~~~~~~~~~v~Vpedly~Kacv~~~eegLea 234 (2196)
T KOG0368|consen 156 ERLSAN-GIIFIGPPASAMRALGDKIASTIIAQSAGVPTLPWSGSGVKVEHIEDKTNLVSVPEDLYEKACVRNVEEGLEA 234 (2196)
T ss_pred HHHHhc-CcEEECCchHHHHHhcchHHHHHHHHhcCCCcccccCCcceeeeecccCCeEecCHHHhhhhhcCCHHHHHHH
Confidence 333444 58888755 5778899998887766654322 1233454444331 110111 11222
Q ss_pred hccCCCcEEEeeccCCCCccceeeEEEeChhhhccC---------CCceEEEeccCCCCeEEEEEEECCEEE---E-EEe
Q 037279 134 DLKLTFPVIAKPLVADGSVKSHQMYLIFDSQGLESM---------TAPFVLQEFVNHGGFIFKVYVAGMNVK---C-VKR 200 (327)
Q Consensus 134 ~~~l~~P~VvKP~~~~Gs~~sh~m~lv~~~~~l~~l---------~~p~vvQefI~h~g~d~KV~ViG~~v~---~-~~R 200 (327)
.+.+|||+.+|-..|+| +.|+..+.+.+++..+ ..|+++-.-..+ +|-+-|=.++|++- . .-|
T Consensus 235 ae~IGfPvMIKASEGGG---GKGIRkv~n~ddF~~lf~qv~~EvPGSPIFlMK~a~~-ARHlEVQlLaDqYGn~IsLfgR 310 (2196)
T KOG0368|consen 235 AEKIGFPVMIKASEGGG---GKGIRKVENEDDFKALFKQVQNEVPGSPIFLMKLADQ-ARHLEVQLLADQYGNVISLFGR 310 (2196)
T ss_pred HHhcCCceEEEeccCCC---CcceeeccchHHHHHHHHHHHhhCCCCceeeeecccC-cceeeeehhhhhcCCEeEeecc
Confidence 46799999999988754 5789999999888654 368888888764 68888999988872 1 111
Q ss_pred c-cCCCchhhhhhhcCCccccccccccccCCcccccCCCCCCCCCccccccCCCCcHHHHHHHHHHHHHHhCCcEeE-EE
Q 037279 201 K-SLPDISEEKLKSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVEMPSQSFLCELARGMREALGLNLFN-FD 278 (327)
Q Consensus 201 ~-S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~~~lGl~l~G-~D 278 (327)
- |+-. +..|+...+ . ..-++...-..|++-|.++++..|.-=+| |.
T Consensus 311 DCSiQR----------------RhQKIIEEA----P------------atIap~etf~~Me~~AvrLak~VGYvSAGTVE 358 (2196)
T KOG0368|consen 311 DCSIQR----------------RHQKIIEEA----P------------ATIAPPETFKKMEQAAVRLAKLVGYVSAGTVE 358 (2196)
T ss_pred cchHHH----------------HHHHHHhhC----C------------cccCCHHHHHHHHHHHHHHHHhhcceecceEE
Confidence 1 1100 001221111 0 00011112458999999999999999998 89
Q ss_pred EEEeCCCCCcEEEEEEc
Q 037279 279 VMRDARDSNRYLIIDVN 295 (327)
Q Consensus 279 vi~~~~~g~~~~VidVN 295 (327)
.+...++| +||++|.|
T Consensus 359 YLYsp~d~-~fyFLELN 374 (2196)
T KOG0368|consen 359 YLYSPDDG-EYYFLELN 374 (2196)
T ss_pred EEEecCCC-cEEEEecC
Confidence 88887677 59999999
No 98
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.
Probab=96.33 E-value=0.0035 Score=57.12 Aligned_cols=94 Identities=18% Similarity=0.189 Sum_probs=52.9
Q ss_pred cCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEEEeeccCC---CCccceeeEE-EeChhhhccC
Q 037279 94 HNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKPLVAD---GSVKSHQMYL-IFDSQGLESM 169 (327)
Q Consensus 94 ~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~VvKP~~~~---Gs~~sh~m~l-v~~~~~l~~l 169 (327)
.+-..+..+|.. .||++|++.++.+.+++.+. ...++||+++|-...+ =| +.-++.+ +.+++++...
T Consensus 10 L~e~e~~~lL~~-------yGI~~~~~~~~~~~~ea~~~-a~~ig~PvvlKi~sp~i~HKs-d~GgV~L~l~~~~~v~~a 80 (222)
T PF13549_consen 10 LTEAEAKELLAA-------YGIPVPPTRLVTSAEEAVAA-AEEIGFPVVLKIVSPDIAHKS-DVGGVRLNLNSPEEVREA 80 (222)
T ss_dssp E-HHHHHHHHHT-------TT------EEESSHHHHHHH-HHHH-SSEEEEEE-TT---HH-HHT-EEEEE-SHHHHHHH
T ss_pred cCHHHHHHHHHH-------cCcCCCCeeEeCCHHHHHHH-HHHhCCCEEEEEecCCCCcCC-CCCcEEECCCCHHHHHHH
Confidence 444577788887 79999999999998776554 4678999999987542 22 3345766 6677666421
Q ss_pred ----------------CCceEEEeccCCCCeEEEEEEECCEEE
Q 037279 170 ----------------TAPFVLQEFVNHGGFIFKVYVAGMNVK 196 (327)
Q Consensus 170 ----------------~~p~vvQefI~h~g~d~KV~ViG~~v~ 196 (327)
...+++|+.++++|..+-|.+.-|-.+
T Consensus 81 ~~~l~~~~~~~~p~~~~~gvlVq~m~~~~g~El~vG~~~Dp~F 123 (222)
T PF13549_consen 81 FERLRERVAAHHPGARIDGVLVQEMAPSGGRELIVGVRRDPQF 123 (222)
T ss_dssp HHHHHHHHHHH-TT----EEEEEE------EEEEEEEEEETTT
T ss_pred HHHHHHHHHHhCCCCccceEEEEEcccCCcEEEEEEEEECCCC
Confidence 135999999987788888877766443
No 99
>PF14243 DUF4343: Domain of unknown function (DUF4343)
Probab=96.08 E-value=0.25 Score=41.15 Aligned_cols=109 Identities=17% Similarity=0.152 Sum_probs=65.4
Q ss_pred CcEEEeeccCCCCccceeeE-EEeChhhhcc---C--CCceEEEeccCCCCeEEEEEEECCEEEEEEeccCCCchhhhhh
Q 037279 139 FPVIAKPLVADGSVKSHQMY-LIFDSQGLES---M--TAPFVLQEFVNHGGFIFKVYVAGMNVKCVKRKSLPDISEEKLK 212 (327)
Q Consensus 139 ~P~VvKP~~~~Gs~~sh~m~-lv~~~~~l~~---l--~~p~vvQefI~h~g~d~KV~ViG~~v~~~~R~S~~~~~~~~~~ 212 (327)
-|+-+||.... .. --. ++.+.+.|.. + +.++++.|.++ =...||+||+++++++..+..-. .
T Consensus 2 ~~~FiKP~~~~---K~-F~g~V~~~~~dl~~~~~~~~~~~V~vSe~v~-~~~E~R~fi~~g~vv~~s~Y~~~-~------ 69 (130)
T PF14243_consen 2 RPVFIKPPDDD---KS-FTGRVFRSGEDLIGFGSLDPDTPVLVSEVVE-IESEWRCFIVDGEVVTGSPYRGD-W------ 69 (130)
T ss_pred CCeEeCCCCCC---Cc-ceeEEEcchhhccccCCCCCCceEEEeceEe-eeeeEEEEEECCEEEEEeecCCC-c------
Confidence 37889998731 11 222 3333444432 2 46899999997 36899999999999876555210 0
Q ss_pred hcCCccccccccccccCCcccccCCCCCCCCCccccccCCCCcHHHHHHHHHHHHH-HhCCcEeEEEEEEeCCCCCcEEE
Q 037279 213 SLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVEMPSQSFLCELARGMRE-ALGLNLFNFDVMRDARDSNRYLI 291 (327)
Q Consensus 213 ~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~~-~lGl~l~G~Dvi~~~~~g~~~~V 291 (327)
. .. +....+......+.+ .-.-.-|.+|+=... +|+ ++|
T Consensus 70 ---------------------~----------------~~-~~~~~~~~~~~~~~~~~~~p~~~vlDvg~~~-~G~-~~l 109 (130)
T PF14243_consen 70 ---------------------D----------------LE-PDPDVVAFAIQALAAAWTLPPAYVLDVGVTD-DGG-WAL 109 (130)
T ss_pred ---------------------c----------------cC-CCHHHHHHHHHHHHhcccCCCeEEEEEEEeC-CCC-EEE
Confidence 0 00 112233333333331 445568889999876 454 899
Q ss_pred EEEcCCCC
Q 037279 292 IDVNYFPG 299 (327)
Q Consensus 292 idVN~fPg 299 (327)
||+|.+=+
T Consensus 110 VE~N~~~~ 117 (130)
T PF14243_consen 110 VEANDGWS 117 (130)
T ss_pred EEecCccc
Confidence 99996543
No 100
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=94.52 E-value=0.15 Score=45.69 Aligned_cols=86 Identities=16% Similarity=0.180 Sum_probs=50.4
Q ss_pred HHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccCCC-cEEEeeccCC-CCccceeeEEEeChhhhccC-----C
Q 037279 98 SMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTF-PVIAKPLVAD-GSVKSHQMYLIFDSQGLESM-----T 170 (327)
Q Consensus 98 ~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~-P~VvKP~~~~-Gs~~sh~m~lv~~~~~l~~l-----~ 170 (327)
..-++|.+ .|||+|+..++.+++++.+.. ..++. ++|+|+..-. |...+-++-++.++++.... .
T Consensus 6 qaK~ll~~-------~gi~vp~g~~a~s~eea~~~~-~~l~~~~~VvKaQvl~GgRGK~GgVk~~~s~~ea~~~a~~mlg 77 (202)
T PF08442_consen 6 QAKELLRK-------YGIPVPRGVVATSPEEAREAA-KELGGKPLVVKAQVLAGGRGKAGGVKIAKSPEEAKEAAKEMLG 77 (202)
T ss_dssp HHHHHHHC-------TT----SEEEESSHHHHHHHH-HHHTTSSEEEEE-SSSSTTTTTTCEEEESSHHHHHHHHHTTTT
T ss_pred HHHHHHHH-------cCCCCCCeeecCCHHHHHHHH-HHhCCCcEEEEEeEeecCcccCCceeecCCHHHHHHHHHHHhC
Confidence 34456666 799999999999988876543 33444 5899997543 34445678899998776422 0
Q ss_pred ---------------CceEEEeccCCCCeEEEEEEE
Q 037279 171 ---------------APFVLQEFVNHGGFIFKVYVA 191 (327)
Q Consensus 171 ---------------~p~vvQefI~h~g~d~KV~Vi 191 (327)
.-++++|+++|..-.|=.+.+
T Consensus 78 ~~l~T~Qtg~~G~~v~~vlvee~v~~~~E~Ylsi~~ 113 (202)
T PF08442_consen 78 KTLKTKQTGPKGEKVNKVLVEEFVDIKREYYLSITL 113 (202)
T ss_dssp SEEE-TTSTTTEEEE--EEEEE---CCEEEEEEEEE
T ss_pred CceEeeecCCCCCEeeEEEEEecCccCceEEEEEEe
Confidence 248999999986444433333
No 101
>KOG0237 consensus Glycinamide ribonucleotide synthetase (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS) [Nucleotide transport and metabolism]
Probab=94.41 E-value=3.3 Score=42.74 Aligned_cols=137 Identities=14% Similarity=0.183 Sum_probs=99.0
Q ss_pred hhHHHHHHHhCCCeEEEeCCCCCccccCCccEEEEccCchhHHHHHHHHHHhCCCCcccCcH-HHHHHhcCHHHHHHHHH
Q 037279 26 QPSLLTKASERGIDLIPIDPIKPLVEQGPFDCIVHKLYGPDWTRQLQQFSSQNPNVPIIDSP-DSIERLHNRISMLEVVT 104 (327)
Q Consensus 26 ~~~l~~~~~~~gi~~~~ld~~~~l~~q~~~Dvilhk~~~~~~~~~l~~~~~~~p~v~Vid~~-~ai~~~~dR~~~~~~L~ 104 (327)
...++..|.++.|.++.+-|+.||..- ....+++ -|+++.-|. ++.++=.+|..+-.++.
T Consensus 57 ~~ala~f~~e~~I~lVvvGPE~PL~~G--------------l~~~l~~-----~gi~~FGPs~~aAqlE~sK~fsK~fm~ 117 (788)
T KOG0237|consen 57 FEALASFCKEHNINLVVVGPELPLVAG--------------LADVLRS-----AGIPCFGPSKQAAQLEASKNFSKDFMH 117 (788)
T ss_pred HHHHHHHHHHcceeEEEECCchhhhhh--------------hhhhhhc-----cCcceeCchHHHHHhhhhHHHHHHHHH
Confidence 446788999999999999999888541 1223332 368888865 55666678888888888
Q ss_pred hcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEEEeeccCCCCccceeeEEEeChhhh-cc------------CCC
Q 037279 105 QLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKPLVADGSVKSHQMYLIFDSQGL-ES------------MTA 171 (327)
Q Consensus 105 ~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~~~~~l-~~------------l~~ 171 (327)
+ ++|||-.+..+.+++.+...+...--+++|+| ++|-.-+.++.+..+.++. +. ...
T Consensus 118 r-------~~IPTA~y~~ft~~e~a~sfi~~~~~~~~ViK---AdGLAAGKGViv~~~~~EA~eAv~sIl~~~~fg~AG~ 187 (788)
T KOG0237|consen 118 R-------HNIPTAKYKTFTDPEEAKSFIQSATDKALVIK---ADGLAAGKGVIVAKSKEEAFEAVDSILVKKVFGSAGK 187 (788)
T ss_pred h-------cCCCcceeeeeCCHHHHHHHHHhCCCcceEEe---ecccccCCceEeeccHHHHHHHHHHHHhhhhhccccc
Confidence 8 69999999999888777665544434679999 6777778899998887442 21 235
Q ss_pred ceEEEeccCCCCeEEEEEEECC
Q 037279 172 PFVLQEFVNHGGFIFKVYVAGM 193 (327)
Q Consensus 172 p~vvQefI~h~g~d~KV~ViG~ 193 (327)
.++++||.+ |-...++..=|
T Consensus 188 tvViEE~LE--GeEvS~laftD 207 (788)
T KOG0237|consen 188 TVVIEELLE--GEEVSFLAFTD 207 (788)
T ss_pred eEehhhhcC--cceEEEEEEec
Confidence 799999996 55555554433
No 102
>PHA02117 glutathionylspermidine synthase domain-containing protein
Probab=93.56 E-value=2.1 Score=42.44 Aligned_cols=179 Identities=19% Similarity=0.255 Sum_probs=98.7
Q ss_pred eEEEEEeCC-ccccccchhHHHHHHHhCCCeEEEeCCCCC-ccccC---------CccEEEEccCchhHHHH--HHHHHH
Q 037279 10 FRIGYALAP-KKGQSLIQPSLLTKASERGIDLIPIDPIKP-LVEQG---------PFDCIVHKLYGPDWTRQ--LQQFSS 76 (327)
Q Consensus 10 ~~vG~~~~~-~k~~~~~~~~l~~~~~~~gi~~~~ld~~~~-l~~q~---------~~Dvilhk~~~~~~~~~--l~~~~~ 76 (327)
+.+..+ .. .-++.....-|...|++.|++...+++..- +.+.| ++|.+. |+..-+|... ..+.+.
T Consensus 177 ~~~~~~-~d~~~ED~~T~~yL~~~a~~AG~~t~~~~i~di~~~~~g~f~vD~~g~~I~~lf-KlyPwE~~~~e~~~~~l~ 254 (397)
T PHA02117 177 GCLNIV-ATGQVEDFVTIAYLAETATEAGAVVKFFDIQEIQLSDRGPFFVDGEDAPIDMCF-KLYPWEWMMEDEFSAEIL 254 (397)
T ss_pred eEEEEe-CCCchhHHHHHHHHHHHHHHcCCceEEeehheEEEcCCCceEECCCCCEeeeee-ecccHHHHhhCcchhhhh
Confidence 455533 33 445555555578889999988888776631 11222 223322 3433222211 111122
Q ss_pred hCCCCcccCcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccCC-CcEEEeeccCCCCccce
Q 037279 77 QNPNVPIIDSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLT-FPVIAKPLVADGSVKSH 155 (327)
Q Consensus 77 ~~p~v~Vid~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~-~P~VvKP~~~~Gs~~sh 155 (327)
..++.+|||+- -.++.|| .++.+|-++-.. +.---|.+.-- + ...... ..++ -..|.||+.| . ++.
T Consensus 255 -~~~~~~ieP~w-k~llsnK-alLalLW~l~p~---hp~LLpay~~~-d-~~~~~~--~~~~~~~yV~KPi~g--R-EG~ 321 (397)
T PHA02117 255 -VSQTRFIEPAW-KMMLSNK-GLLALLYERYPD---CPWLVPAYVED-D-FDRENL--FTLENPKYVSKPLLS--R-EGN 321 (397)
T ss_pred -hCCcEEechhH-HhHhccH-HHHHHHHHhcCC---Ccccccccccc-c-ccccch--hccccCCEEeccCCC--c-CCC
Confidence 25699999984 4567888 555666553111 12222222100 0 001000 0011 1499999997 3 677
Q ss_pred eeEEEeChhhhcc----C-CCceEEEeccCCC---C-e-EEEEEEECCEEEE-EEeccC
Q 037279 156 QMYLIFDSQGLES----M-TAPFVLQEFVNHG---G-F-IFKVYVAGMNVKC-VKRKSL 203 (327)
Q Consensus 156 ~m~lv~~~~~l~~----l-~~p~vvQefI~h~---g-~-d~KV~ViG~~v~~-~~R~S~ 203 (327)
+|.++.+-+.+.. + +.++|.|+|++=+ | . .+=+++|||+..+ ..|.+.
T Consensus 322 nV~i~~~g~~~~~~~g~y~~~~~IyQ~~~~Lp~f~g~~~~iGsw~vg~~~aGlgiRe~~ 380 (397)
T PHA02117 322 NIHIFEYGGESEDTDGNYAEEPRVVQQLIEWGRFDGCYPMIGVWMVGSEAAGLCIREDD 380 (397)
T ss_pred CEEEEECCeEEeccCCCCCCCCeEEEEccCCcccCCcEEEEEEEEECCEeeEEEEecCC
Confidence 9999866433322 2 4689999999852 3 3 6889999999987 568763
No 103
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=93.49 E-value=0.31 Score=48.10 Aligned_cols=89 Identities=8% Similarity=-0.081 Sum_probs=62.1
Q ss_pred HHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccCCCc-EEEeecc-CCCCccceeeEEEeChhhhccC------
Q 037279 98 SMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFP-VIAKPLV-ADGSVKSHQMYLIFDSQGLESM------ 169 (327)
Q Consensus 98 ~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P-~VvKP~~-~~Gs~~sh~m~lv~~~~~l~~l------ 169 (327)
..-++|.+ .|||+|++.++.+++++.+. ...++|| +|+|... ..|...+.++.+..+.+++...
T Consensus 7 eak~lL~~-------yGIpvp~~~~~~~~~ea~~~-a~~lg~p~~VvK~qv~~g~Rgk~GGV~l~~~~~e~~~a~~~ll~ 78 (392)
T PRK14046 7 QAKELLAS-------FGVAVPRGALAYSPEQAVYR-ARELGGWHWVVKAQIHSGARGKAGGIKLCRTYNEVRDAAEDLLG 78 (392)
T ss_pred HHHHHHHH-------cCCCCCCceEECCHHHHHHH-HHHcCCCcEEEEeeeccCCCCcCCeEEEECCHHHHHHHHHHHhc
Confidence 44567776 79999999999998876553 4568995 5999754 2244466788888888776421
Q ss_pred ----------C----CceEEEeccCCCCeEEEEEEECCEE
Q 037279 170 ----------T----APFVLQEFVNHGGFIFKVYVAGMNV 195 (327)
Q Consensus 170 ----------~----~p~vvQefI~h~g~d~KV~ViG~~v 195 (327)
. .-+++|+++++ ++.+-+-+.-|..
T Consensus 79 ~~~~~~~~~~~g~~v~~vlVe~~~~~-~~E~ylgi~~D~~ 117 (392)
T PRK14046 79 KKLVTHQTGPEGKPVQRVYVETADPI-ERELYLGFVLDRK 117 (392)
T ss_pred chhhhhccCCCCCeeeeEEEEEecCC-CcEEEEEEEECCC
Confidence 0 13899999986 4666666655543
No 104
>KOG2158 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.22 E-value=0.14 Score=50.83 Aligned_cols=76 Identities=20% Similarity=0.156 Sum_probs=48.8
Q ss_pred cCCCeEEEEcCc-cchhHHHhccCCCcEEEeeccCCCCccceeeEEEeChhhhccCCCceEEEeccCC-------CCeEE
Q 037279 115 FGVPNQVVVSEM-KSLTSIEDLKLTFPVIAKPLVADGSVKSHQMYLIFDSQGLESMTAPFVLQEFVNH-------GGFIF 186 (327)
Q Consensus 115 i~~P~~~~~~~~-~~~~~~~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~~~~~l~~l~~p~vvQefI~h-------~g~d~ 186 (327)
..-|+++.+-.+ .++.+. .....-|+||||..|+ .|.+++++.|.......+. .++||||-. =-.|+
T Consensus 203 ~fyp~sw~lPa~l~df~a~-~~~~KrtfivkpDsga---qg~giylisDir~~g~~Q~-~~vQeyV~~pLli~dkyKfd~ 277 (565)
T KOG2158|consen 203 MFYPTSWRLPAPLCDFPAS-TEIMKRTFIVKPDSGA---QGSGIYLISDIREKGEYQN-KKVQEYVTYPLLISDKYKFDQ 277 (565)
T ss_pred cCCCccccCchHHHHHHHH-HHHhcccEEECCCCCC---CCcceeeechhhhhhHHHH-HHHHHHhcccccccccceeee
Confidence 446777766542 222222 2334449999999875 5569999987766555544 678888743 24788
Q ss_pred EEEEECCEE
Q 037279 187 KVYVAGMNV 195 (327)
Q Consensus 187 KV~ViG~~v 195 (327)
|||++=-.+
T Consensus 278 rvy~likSv 286 (565)
T KOG2158|consen 278 RVYSLIKSV 286 (565)
T ss_pred eeeeeeecc
Confidence 999885444
No 105
>KOG2157 consensus Predicted tubulin-tyrosine ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.07 E-value=0.24 Score=50.17 Aligned_cols=57 Identities=18% Similarity=0.334 Sum_probs=43.5
Q ss_pred cCCCcEEEeeccCCCCccceeeEEEeChhhhccC------------CCceEEEeccCCC----C--eEEEEEEECCEE
Q 037279 136 KLTFPVIAKPLVADGSVKSHQMYLIFDSQGLESM------------TAPFVLQEFVNHG----G--FIFKVYVAGMNV 195 (327)
Q Consensus 136 ~l~~P~VvKP~~~~Gs~~sh~m~lv~~~~~l~~l------------~~p~vvQefI~h~----g--~d~KV~ViG~~v 195 (327)
.-....|+||.. ...+.|+.++.+.+.+... +..+++|-||+++ | .|+|.||+=...
T Consensus 197 ~~~~~wIvKP~~---~srg~GI~~~~~l~~l~~~~~~~~~~~s~~~~~~~vv~~yi~~plli~~~KfDlR~~vlvt~~ 271 (497)
T KOG2157|consen 197 SERSWWIVKPAS---KSRGRGIFLFNTLSDLQAIVDSFDSFISENNDEGYVVSAYIDRPLLIGGHKFDLRQYVLVTHF 271 (497)
T ss_pred cccceEEecccc---ccccceeEEecchhhhhhhhhcccccccccccccceeeeeccCccccCCceeeeeEEEEeecc
Confidence 557899999965 3478999999988776433 3579999999985 2 588999886544
No 106
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=89.71 E-value=1.3 Score=43.42 Aligned_cols=82 Identities=17% Similarity=0.135 Sum_probs=57.7
Q ss_pred HHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccCC-CcEEEeeccCC-CCccceeeEEEeChhhhccC-----C-
Q 037279 99 MLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLT-FPVIAKPLVAD-GSVKSHQMYLIFDSQGLESM-----T- 170 (327)
Q Consensus 99 ~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~-~P~VvKP~~~~-Gs~~sh~m~lv~~~~~l~~l-----~- 170 (327)
.-++|.+ .|||+|+..++.+++++.+. ...++ .|+|+|+..=. |...+=++-++.+.++.... .
T Consensus 8 aKelf~~-------~GiPvp~g~v~~s~eea~~~-a~~lg~~~~VvKaQV~aGGRGKaGGVk~~~s~~ea~~~a~~~lg~ 79 (387)
T COG0045 8 AKELFAK-------YGIPVPPGYVATSPEEAEEA-AKELGGGPVVVKAQVHAGGRGKAGGVKLAKSPEEAKEAAEEILGK 79 (387)
T ss_pred HHHHHHH-------cCCCCCCceeeeCHHHHHHH-HHHhCCCcEEEEeeeeecCccccCceEEeCCHHHHHHHHHHHhCc
Confidence 3456666 79999999999998887664 34454 79999998533 34345589999999776422 1
Q ss_pred -----------CceEEEeccCCCCeEEEE
Q 037279 171 -----------APFVLQEFVNHGGFIFKV 188 (327)
Q Consensus 171 -----------~p~vvQefI~h~g~d~KV 188 (327)
.-+|++|+++|..+.|=+
T Consensus 80 ~~q~~~~G~~v~~vlvee~~~~~~~E~Yl 108 (387)
T COG0045 80 NYQTDIKGEPVNKVLVEEAVDIIKKEYYL 108 (387)
T ss_pred ccccCcCCceeeEEEEEecCCCccceEEE
Confidence 248999999976534433
No 107
>PRK10507 bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase; Provisional
Probab=89.66 E-value=6 Score=41.41 Aligned_cols=163 Identities=13% Similarity=0.159 Sum_probs=93.2
Q ss_pred ccccchhHHHHHHHhCCCeEEEe-CCCCC-------ccc-cC-CccEEEEccCchhHHH---------------------
Q 037279 21 GQSLIQPSLLTKASERGIDLIPI-DPIKP-------LVE-QG-PFDCIVHKLYGPDWTR--------------------- 69 (327)
Q Consensus 21 ~~~~~~~~l~~~~~~~gi~~~~l-d~~~~-------l~~-q~-~~Dvilhk~~~~~~~~--------------------- 69 (327)
.|.....-|..+|++.|++...+ +++.- +-+ +| ++|++.-.. .-++..
T Consensus 391 eED~T~~YL~d~a~qAG~~t~~~~~iedL~~d~~G~~~D~dg~~I~~vfKly-PWE~~~~dira~~d~d~~~~~~f~g~~ 469 (619)
T PRK10507 391 EENYHAQFMQQALHQAGFETKILRGLDELRWDAAGQLIDGDGRLVNCVWKTW-AWETALDQIREVSDREFAAVPIRTGHP 469 (619)
T ss_pred CcHHHHHHHHHHHHHCCCceEEecCHHHeEECCCCcEECCCCCEeeeeeecc-cHHHhhhHHhhhccchhcccccccccc
Confidence 55553333677899999999998 45531 111 12 455555322 111111
Q ss_pred ----HHHHHHHhCCCCcccCcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEEEee
Q 037279 70 ----QLQQFSSQNPNVPIIDSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKP 145 (327)
Q Consensus 70 ----~l~~~~~~~p~v~Vid~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~VvKP 145 (327)
.+...+ ..+.+.+|+|+-+ .++.|| .++.+|-++-. +..---|.+... + .. + .+-..|.||
T Consensus 470 ~h~~~L~~lL-~~~~~~~iEP~Wk-~llsNK-aiLplLW~l~p---~Hp~LLpayfe~---d--~~-l---~~~~yV~KP 534 (619)
T PRK10507 470 QNEVRLIDVL-LRPEVLVFEPLWT-VIPGNK-AILPVLWSLFP---HHRYLLDTDFTV---N--DE-L---VKTGYAVKP 534 (619)
T ss_pred cchhHHHHhh-ccCceEEEcccHH-hhcccH-HHHHHHHHhCC---CCcccccccccC---C--cc-c---ccCCeEecc
Confidence 111111 1257999999844 567888 66667766311 112222333211 1 11 1 122499999
Q ss_pred ccCCCCccceeeEEEeCh-hhhcc----C-CCceEEEeccCCC---C--eEEEEEEECCEEEE-EEecc
Q 037279 146 LVADGSVKSHQMYLIFDS-QGLES----M-TAPFVLQEFVNHG---G--FIFKVYVAGMNVKC-VKRKS 202 (327)
Q Consensus 146 ~~~~Gs~~sh~m~lv~~~-~~l~~----l-~~p~vvQefI~h~---g--~d~KV~ViG~~v~~-~~R~S 202 (327)
+.| . ++.+|.|+.+. ..+.. + +.++|.|+|++=+ | ..+=+++|||+..+ ..|.+
T Consensus 535 i~G--R-EG~nV~i~~~~g~~~~~~~g~y~~~~~IyQ~~~~LP~f~~~~~~iGsw~vgg~~aG~giRed 600 (619)
T PRK10507 535 IAG--R-CGSNIDLVSHQEEVLDKTSGKFAEQKNIYQQLWCLPKVDGKYIQVCTFTVGGNYGGTCLRGD 600 (619)
T ss_pred CCC--c-CCCCEEEEeCCCcEeeccCCCCCCCCeEEEEeccCcccCCCEEEEEEEEECCEEEEEEEecC
Confidence 997 3 67799998763 22222 1 3589999999853 2 35789999999987 56876
No 108
>PF07065 D123: D123; InterPro: IPR009772 This family contains a number of eukaryotic D123 proteins approximately 330 residues long. It has been shown that mutated variants of D123 exhibit temperature-dependent differences in their degradation rate [].
Probab=88.62 E-value=2.5 Score=40.24 Aligned_cols=93 Identities=18% Similarity=0.328 Sum_probs=63.0
Q ss_pred CCceEEEeccCCC-CeEEEEEEECCEEEEEEeccCCCchhhhhhhcCCccccccccccccCCcccccCCCCCCCCCcccc
Q 037279 170 TAPFVLQEFVNHG-GFIFKVYVAGMNVKCVKRKSLPDISEEKLKSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDL 248 (327)
Q Consensus 170 ~~p~vvQefI~h~-g~d~KV~ViG~~v~~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 248 (327)
..-+++.+|.+-+ +..|||||-+++.+++..+-+ +. |+.+..
T Consensus 149 ~~~LvLrkw~~l~p~~EFRcFV~~~~LiaISQr~~-~~-------------~~~L~~----------------------- 191 (299)
T PF07065_consen 149 PYELVLRKWVNLNPSMEFRCFVRNRKLIAISQRDL-NY-------------YDFLEE----------------------- 191 (299)
T ss_pred ceEEEEeccccCCccceEEEEEECCEEEEEecccc-cc-------------cHHHHH-----------------------
Confidence 3457888888754 899999999999998665443 32 110000
Q ss_pred ccCCCCcHHHHHHHH-HHHHHHhCCcEeEEEEEEeCCCCCcEEEEEEcCCCCCCC
Q 037279 249 ESVEMPSQSFLCELA-RGMREALGLNLFNFDVMRDARDSNRYLIIDVNYFPGYAK 302 (327)
Q Consensus 249 ~~~~~~~~~~l~~lA-~~~~~~lGl~l~G~Dvi~~~~~g~~~~VidVN~fPg~~g 302 (327)
... .....+.+.. ..+...+.++=|-|||.++...+ +.++||+|.|-+-.+
T Consensus 192 ~~~--~I~~~I~~F~~~~I~~~~~~~~~v~DVyi~~~~~-~v~LID~NPf~~~Td 243 (299)
T PF07065_consen 192 LKE--EIRSKIQEFFEEHIKPKFPLDNYVFDVYITRDKD-KVWLIDFNPFGPRTD 243 (299)
T ss_pred HHH--HHHHHHHHHHHHHHHhhCCCCCEEEEEEEcCCCC-eEEEEEecCCcccCc
Confidence 000 0123444444 56788899999999999987534 489999999988544
No 109
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=87.08 E-value=2 Score=35.21 Aligned_cols=79 Identities=20% Similarity=0.410 Sum_probs=45.1
Q ss_pred EEEEEeCCcc---ccccchhHHHHHHHhCCCeEEEeCCCCC-------------cc------------c-----cCCccE
Q 037279 11 RIGYALAPKK---GQSLIQPSLLTKASERGIDLIPIDPIKP-------------LV------------E-----QGPFDC 57 (327)
Q Consensus 11 ~vG~~~~~~k---~~~~~~~~l~~~~~~~gi~~~~ld~~~~-------------l~------------~-----q~~~Dv 57 (327)
+||+.+.|-- ..+-.+-.|+.+|-+|||++....++.- +. + -..+|+
T Consensus 2 ki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~dL~~~~g~~~a~~~~v~~~~~~~~~~~~~~~~~~~L~~~Dv 81 (119)
T PF02951_consen 2 KIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPGDLSLRDGRVWARARPVEVKDDPKDWYKLGEEEEIPLDDFDV 81 (119)
T ss_dssp EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGGEEEETTEEEEEEEEEEE-S-SS--EEEEEEEEEEGGGSSE
T ss_pred eEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCcEEEECCEEEEEEEEEEEecCCCCcEecCCcEEcccccCCE
Confidence 6888888743 3343455688999999999998876631 00 0 025899
Q ss_pred EEEccCch---hH---HHHHHHHHHhCCCCcccCcHHHHH
Q 037279 58 IVHKLYGP---DW---TRQLQQFSSQNPNVPIIDSPDSIE 91 (327)
Q Consensus 58 ilhk~~~~---~~---~~~l~~~~~~~p~v~Vid~~~ai~ 91 (327)
|+-|--.+ .+ ...| +.+ +..|+.|||+|++++
T Consensus 82 vlmRkDPPfD~~yi~aT~lL-e~a-~~~gv~VvN~P~~lR 119 (119)
T PF02951_consen 82 VLMRKDPPFDMEYIYATYLL-ELA-ERQGVLVVNDPQSLR 119 (119)
T ss_dssp EEEE--S---HHHHHHHHHH-HHH-HHTT-EEES-HHHHH
T ss_pred EEEecCCCCChHHHHHHHHH-HHh-hhCCcEEEeChhhcC
Confidence 99886322 11 2222 332 346999999999885
No 110
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=84.61 E-value=1.2 Score=42.56 Aligned_cols=66 Identities=14% Similarity=0.217 Sum_probs=47.4
Q ss_pred CHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEEEeeccCCCCccceeeEEEeChhhhccC-----
Q 037279 95 NRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKPLVADGSVKSHQMYLIFDSQGLESM----- 169 (327)
Q Consensus 95 dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~~~~~l~~l----- 169 (327)
||..-+.+|++ +|++.|+.+ ++++++ .-|+|||+..|- +++|-.++.|.+++..-
T Consensus 124 ~~~~~~~lLek-------Agi~~P~~~--~~PeeI--------dr~VIVK~pgAk---ggRGyFiA~s~eef~ek~e~l~ 183 (361)
T COG1759 124 DRKLEYKLLEK-------AGLRIPKKY--KSPEEI--------DRPVIVKLPGAK---GGRGYFIASSPEEFYEKAERLL 183 (361)
T ss_pred chhhHHHHHHH-------cCCCCCccc--CChHHc--------CCceEEecCCcc---CCceEEEEcCHHHHHHHHHHHH
Confidence 55566777777 799999974 345543 449999998774 47999999999887421
Q ss_pred C---------CceEEEeccC
Q 037279 170 T---------APFVLQEFVN 180 (327)
Q Consensus 170 ~---------~p~vvQefI~ 180 (327)
. .-..+||||=
T Consensus 184 ~~gvi~~edlkna~IeEYv~ 203 (361)
T COG1759 184 KRGVITEEDLKNARIEEYVV 203 (361)
T ss_pred HcCCcchhhhhhceeeEEee
Confidence 1 2467888874
No 111
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=82.06 E-value=1.7 Score=43.47 Aligned_cols=43 Identities=16% Similarity=0.194 Sum_probs=33.2
Q ss_pred HHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccC---CCcEEEeecc
Q 037279 97 ISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKL---TFPVIAKPLV 147 (327)
Q Consensus 97 ~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l---~~P~VvKP~~ 147 (327)
+..-++|.+ .|||+|+..++.+++++.+. ...+ ++|+|+|+..
T Consensus 33 yqaK~LL~~-------~GIpvp~~~va~t~eea~~a-a~~l~~~~~pvVvKaqv 78 (422)
T PLN00124 33 YQGAELMSK-------YGVNVPKGAAASSLDEVKKA-LEKMFPDEGEVVVKSQI 78 (422)
T ss_pred HHHHHHHHH-------cCCCCCCceeeCCHHHHHHH-HHHhcccCCcEEEEEEe
Confidence 355567777 79999999999998776554 2445 6899999985
No 112
>KOG2156 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=79.14 E-value=2.5 Score=42.91 Aligned_cols=72 Identities=17% Similarity=0.298 Sum_probs=47.7
Q ss_pred CCCeEEEEcC-ccchhHHHhccCCCcEEEeeccCCCCccceeeEEEeChhhhccCCCceEEEeccCC------CCeEEEE
Q 037279 116 GVPNQVVVSE-MKSLTSIEDLKLTFPVIAKPLVADGSVKSHQMYLIFDSQGLESMTAPFVLQEFVNH------GGFIFKV 188 (327)
Q Consensus 116 ~~P~~~~~~~-~~~~~~~~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~~~~~l~~l~~p~vvQefI~h------~g~d~KV 188 (327)
..|+++++-. .+.+.+.....-.-=+||||... ..+-|+.++.....+.. ..|+++|+||.. +-+|+++
T Consensus 282 fmPrtyilP~d~e~lrk~w~~nasr~wIVkppas---aRg~gIrv~~kw~q~pk-~rpLvvQ~yieRP~ling~KFDlrl 357 (662)
T KOG2156|consen 282 FMPRTYILPADREELRKYWEKNASRLWIVKPPAS---ARGIGIRVINKWSQFPK-DRPLVVQKYIERPLLINGSKFDLRL 357 (662)
T ss_pred ccceeeeccccHHHHHHHHhhCccccEEecCccc---ccCcceEeccchhhCCC-cccHHHHHHhhcceeecCcceeEEE
Confidence 4788888853 33343333221222289999763 46678999988877632 468899999975 2478888
Q ss_pred EEE
Q 037279 189 YVA 191 (327)
Q Consensus 189 ~Vi 191 (327)
||+
T Consensus 358 Yv~ 360 (662)
T KOG2156|consen 358 YVV 360 (662)
T ss_pred EEE
Confidence 876
No 113
>KOG2156 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=78.66 E-value=1.7 Score=44.08 Aligned_cols=47 Identities=21% Similarity=0.408 Sum_probs=33.2
Q ss_pred CcEeEEEEEEeCCCCCcEEEEEEcCCCCCC-CCC---ChHHHHHHHHHHHHhh
Q 037279 272 LNLFNFDVMRDARDSNRYLIIDVNYFPGYA-KMP---GYESIMTDFFLQVLNK 320 (327)
Q Consensus 272 l~l~G~Dvi~~~~~g~~~~VidVN~fPg~~-g~~---~~~~~l~~~~~~~~~~ 320 (327)
-+|||||+++|++- .++++|||-.|+.. +.+ .+...|+..+.+++.=
T Consensus 476 fELfgFDiilDedL--kpwLlEVNISPSLhS~tpld~~vk~~li~~vlNlagi 526 (662)
T KOG2156|consen 476 FELFGFDIILDEDL--KPWLLEVNISPSLHSETPLDCSVKAPLIQDVLNLAGI 526 (662)
T ss_pred hhhhcceEEecCcc--ceeeEEEecccccccCCCccchhhhHHHHHHHHhcce
Confidence 56899999999754 38999999999986 333 2345555555555443
No 114
>PLN02235 ATP citrate (pro-S)-lyase
Probab=75.06 E-value=13 Score=37.11 Aligned_cols=70 Identities=19% Similarity=0.271 Sum_probs=47.8
Q ss_pred CCcCCCeEEEE-cCccchhHHHhc--cCCCc-EEEeeccCC-CCccceeeEEEeChhhhccC-----CC-----------
Q 037279 113 EKFGVPNQVVV-SEMKSLTSIEDL--KLTFP-VIAKPLVAD-GSVKSHQMYLIFDSQGLESM-----TA----------- 171 (327)
Q Consensus 113 ~~i~~P~~~~~-~~~~~~~~~~~~--~l~~P-~VvKP~~~~-Gs~~sh~m~lv~~~~~l~~l-----~~----------- 171 (327)
.|||+|+..++ .+++++.+.... .++.| +|+||.+-. |...+=++-++.++++.... ..
T Consensus 23 ~gipvP~~~v~~~~~ee~~~~~~~~~~l~~~~~VVKaQvl~GgRGKaGGVk~~~s~~Ea~~~a~~~Lg~~l~t~g~~G~v 102 (423)
T PLN02235 23 AGIDLPIRSAQVTESTDFNELANKEPWLSSTKLVVKPDMLFGKRGKSGLVALNLDLAQVATFVKERLGKEVEMGGCKGPI 102 (423)
T ss_pred CCCCCCCCeeccCCHHHHHHHHHhhhhhCCCcEEEEcccccCCCcccCceEEeCCHHHHHHHHHHHhCCceEecCCCccE
Confidence 49999999988 777766554311 26664 699998654 33344578889998776532 11
Q ss_pred -ceEEEeccCCC
Q 037279 172 -PFVLQEFVNHG 182 (327)
Q Consensus 172 -p~vvQefI~h~ 182 (327)
-++++|+++|.
T Consensus 103 ~~vLVEe~v~i~ 114 (423)
T PLN02235 103 TTFIVEPFVPHD 114 (423)
T ss_pred eEEEEEecCCCc
Confidence 36788888875
No 115
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=71.19 E-value=8.1 Score=42.13 Aligned_cols=235 Identities=17% Similarity=0.174 Sum_probs=125.4
Q ss_pred ccchhHHHHHHHhCCCeEEEeCCCCCccc--cC----------------------CccEEEEccCchhH----HHHHHHH
Q 037279 23 SLIQPSLLTKASERGIDLIPIDPIKPLVE--QG----------------------PFDCIVHKLYGPDW----TRQLQQF 74 (327)
Q Consensus 23 ~~~~~~l~~~~~~~gi~~~~ld~~~~l~~--q~----------------------~~Dvilhk~~~~~~----~~~l~~~ 74 (327)
.+.-..-+++.++.|+.-+.|+|+-.... ++ ..|.++--+..+.. .+.-..-
T Consensus 397 DYSGsQAiKAlkEe~i~TiLiNPNIAtvQts~~lAD~vyflpvT~~~vt~vi~~erPd~il~tfggqtaLncgvel~k~g 476 (1435)
T KOG0370|consen 397 DYSGSQAIKALKEENIFTILINPNIATVQTSKGLADKVYFLPVTPEYVTKVIKAERPDGILLTFGGQTALNCGVELDKAG 476 (1435)
T ss_pred eeeHHHHHHhhhhcccEEEEECCcccccccccccceEEEEeecCHHHHHHHHHhhCCCeEEEecCCccccccceeeeecc
Confidence 34444457889999999999999843211 11 23444443332210 0000011
Q ss_pred HHhCCCCcccC-cHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEEEeeccCCCCcc
Q 037279 75 SSQNPNVPIID-SPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKPLVADGSVK 153 (327)
Q Consensus 75 ~~~~p~v~Vid-~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~VvKP~~~~Gs~~ 153 (327)
..+.+++.|+- |.+.+...-||-.....|.++ +.+.-++...++.+++.++ .+.++||+|+....+-|.
T Consensus 477 vf~~~~vkvLgt~i~ti~ttedr~lfa~am~ei-------~e~ia~s~a~~sie~al~a-ae~l~ypvivRaayalgg-- 546 (1435)
T KOG0370|consen 477 VFAQYGVKVLGTPIQTIITTEDRDLFARALNEI-------NEKIAPSEAVSTIEEALEA-AERLGYPVIVRAAYALGG-- 546 (1435)
T ss_pred cccccchhhhCCCcccceeeccHHHHHHHHHhh-------cccccchhhHhHHHHHHHH-HHhcCcHHHHHHHHHhcC--
Confidence 12235677775 778889999998888888873 4555555555554433332 678999999998776433
Q ss_pred ceeeEEEeChhhhccCC-------CceEEEeccCCCCeEEEEEEECCEEE-EEEeccCCCchhhhhhhcCCccccccccc
Q 037279 154 SHQMYLIFDSQGLESMT-------APFVLQEFVNHGGFIFKVYVAGMNVK-CVKRKSLPDISEEKLKSLKGFLPFSRISN 225 (327)
Q Consensus 154 sh~m~lv~~~~~l~~l~-------~p~vvQefI~h~g~d~KV~ViG~~v~-~~~R~S~~~~~~~~~~~~~g~~~f~~~s~ 225 (327)
-+=-.+.|+++|.++. +.++++.=+. +...+-.-|+-|..- +..-.-+-|+.+ +-.|
T Consensus 547 -lgSgfa~n~eeL~~l~~~a~a~s~QilvekSlk-GwkevEyevvrDa~~nciTvcnmen~Dp---------lgih---- 611 (1435)
T KOG0370|consen 547 -LGSGFANNEEELQDLAAQALALSPQILVEKSLK-GWKEVEYEVVRDAYDNCITVCNMENFDP---------LGIH---- 611 (1435)
T ss_pred -ccccccccHHHHHHHHhhccccCceeeehhhhc-cccceEEEEEeccccchhhhcCCcccCc---------ceee----
Confidence 2233457888887552 3455554442 334444445555441 111111112111 0000
Q ss_pred cccCCcccccCCCCCCCCCccccccCCCCcH---HHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCcEEEEEEcCCCC
Q 037279 226 LIDNDKKVHDDGKKNSQGDEVDLESVEMPSQ---SFLCELARGMREALGLN-LFNFDVMRDARDSNRYLIIDVNYFPG 299 (327)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~VidVN~fPg 299 (327)
+ |...-..+.....+ ..++..|.++-+.||.- =+++-......+ ..|+|||||+-=+
T Consensus 612 --t--------------GdSiVvapsqtlsd~ey~mlrttaikVirhlgvvGEcniQyaL~p~s-~~y~IiEVNarLS 672 (1435)
T KOG0370|consen 612 --T--------------GDSIVVAPSQTLSDEEYQMLRTTAIKVIRHLGVVGECNIQYALNPYS-LEYRIIEVNARLS 672 (1435)
T ss_pred --c--------------cceEEEeeccccChHHHHHHHhcchhheeccCCcccccceeeecccc-eeEEEEEEEeEEe
Confidence 0 11000111111122 35677788888888853 334655655543 3599999996443
No 116
>PF02729 OTCace_N: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; InterPro: IPR006132 This entry contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and may also play a role in trimerization of the molecules []. The carboxyl-terminal, aspartate/ornithine-binding domain is is described by IPR006131 from INTERPRO. ; GO: 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 2P2G_D 2I6U_A 2YFK_B 3D6N_B 3SDS_A 3GD5_A 3R7L_B 3R7F_A 3R7D_A ....
Probab=52.31 E-value=58 Score=27.33 Aligned_cols=71 Identities=21% Similarity=0.283 Sum_probs=45.5
Q ss_pred CceEEEEEeCCcc-ccccchhHHHHHHHhCCCeEEEeCCCCCccccC------------CccEEEEccCchhHHHHHHHH
Q 037279 8 QRFRIGYALAPKK-GQSLIQPSLLTKASERGIDLIPIDPIKPLVEQG------------PFDCIVHKLYGPDWTRQLQQF 74 (327)
Q Consensus 8 ~~~~vG~~~~~~k-~~~~~~~~l~~~~~~~gi~~~~ld~~~~l~~q~------------~~Dvilhk~~~~~~~~~l~~~ 74 (327)
...+|+..|.+.= +-+. .|..++.+.|..++.++....-...+ =+|+++-|...+.....+.
T Consensus 38 ~gk~v~~lF~e~StRTR~---SFe~A~~~LGg~~i~~~~~~s~~~k~Esl~Dtar~ls~~~D~iv~R~~~~~~~~~~a-- 112 (142)
T PF02729_consen 38 KGKTVALLFFEPSTRTRL---SFEAAANRLGGHVIYLDPSTSSLGKGESLEDTARVLSRYVDAIVIRHPSHGALEELA-- 112 (142)
T ss_dssp TTCEEEEEESS--HHHHH---HHHHHHHHTTCEEEEEETTTSSTTTSSEHHHHHHHHHHHCSEEEEEESSHHHHHHHH--
T ss_pred CCCEEEEEecCCCchhhh---hHHHhhhcceeEEEEECcccccCcCCCCHHHHHHHHHHhhheEEEEeccchHHHHHH--
Confidence 4577777777642 2222 35678999999999999664211111 2699999976665444333
Q ss_pred HHhCCCCcccC
Q 037279 75 SSQNPNVPIID 85 (327)
Q Consensus 75 ~~~~p~v~Vid 85 (327)
++..+||||
T Consensus 113 --~~~~vPVIN 121 (142)
T PF02729_consen 113 --EHSSVPVIN 121 (142)
T ss_dssp --HHCSSEEEE
T ss_pred --HhccCCeEc
Confidence 345899999
No 117
>PF04174 CP_ATPgrasp_1: A circularly permuted ATPgrasp ; InterPro: IPR007302 This is a domain of unknown function. It sometimes occurs in combination with IPR007296 from INTERPRO) and (IPR007297 from INTERPRO).; PDB: 3N6X_A.
Probab=43.11 E-value=27 Score=33.72 Aligned_cols=27 Identities=22% Similarity=0.465 Sum_probs=18.7
Q ss_pred CCcEeEEEEEEeCCCCCcEEEEEEcCCCC
Q 037279 271 GLNLFNFDVMRDARDSNRYLIIDVNYFPG 299 (327)
Q Consensus 271 Gl~l~G~Dvi~~~~~g~~~~VidVN~fPg 299 (327)
-+.++|+|++.+. +|+ ++|+|.|.-..
T Consensus 67 ~~~~~g~Dl~r~~-dG~-w~VleDn~~~P 93 (330)
T PF04174_consen 67 RLHFYGADLVRDP-DGR-WRVLEDNTRAP 93 (330)
T ss_dssp S-SEEEEEEEE-S-SS--EEEEEEE-SS-
T ss_pred EEEEEEEeeeECC-CCC-EEEEEecCCCC
Confidence 4889999999986 464 99999996543
No 118
>TIGR02049 gshA_ferroox glutamate--cysteine ligase, T. ferrooxidans family. This family consists of a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=40.96 E-value=68 Score=31.58 Aligned_cols=59 Identities=20% Similarity=0.182 Sum_probs=42.4
Q ss_pred c-EEEeeccCCCCccceeeEEEeChhhhccCC----------------CceEEEeccCCCCe------EEEEEEECCEEE
Q 037279 140 P-VIAKPLVADGSVKSHQMYLIFDSQGLESMT----------------APFVLQEFVNHGGF------IFKVYVAGMNVK 196 (327)
Q Consensus 140 P-~VvKP~~~~Gs~~sh~m~lv~~~~~l~~l~----------------~p~vvQefI~h~g~------d~KV~ViG~~v~ 196 (327)
| +|||...| + -+-++..+.+.+++..++ .-+++||=|.+.-+ .==||.||..++
T Consensus 258 PfViVKADaG--T-YGMGImtv~~~~ev~~LNrK~RnKM~~~Keg~~V~~VIiQEGV~T~E~~~~avAEPVVYmid~~vv 334 (403)
T TIGR02049 258 PYVIVKADAG--T-YGMGIMTATSGEEVLGLNRKERNKMAKVKEGLEVSEVIIQEGVYTFEMFNEAVAEPVVYMIGRTVT 334 (403)
T ss_pred CeEEEEcCCC--C-CCceEEEecCHHHHHHhhhhhhhhcccccCCCccceEEEecCcceeeeeCCcccCceEEEECCEEe
Confidence 5 78896654 5 677888899998886552 25999998875322 223899999998
Q ss_pred E-EEec
Q 037279 197 C-VKRK 201 (327)
Q Consensus 197 ~-~~R~ 201 (327)
+ .+|.
T Consensus 335 ggfYRv 340 (403)
T TIGR02049 335 GGFYRV 340 (403)
T ss_pred EEEEEe
Confidence 7 5675
No 119
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=39.11 E-value=1.2e+02 Score=23.63 Aligned_cols=36 Identities=19% Similarity=0.107 Sum_probs=26.0
Q ss_pred EEEeCCccccccchhHHHHHHHhCCCeEEEeCCCCC
Q 037279 13 GYALAPKKGQSLIQPSLLTKASERGIDLIPIDPIKP 48 (327)
Q Consensus 13 G~~~~~~k~~~~~~~~l~~~~~~~gi~~~~ld~~~~ 48 (327)
-..-.+.....+....+..++++.|+++..+|.+.+
T Consensus 4 ~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~~ 39 (121)
T PF02310_consen 4 VLACVPGEVHPLGLLYLAAYLRKAGHEVDILDANVP 39 (121)
T ss_dssp EEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB-
T ss_pred EEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCCCC
Confidence 334444556666666788899999999999988753
No 120
>KOG2157 consensus Predicted tubulin-tyrosine ligase [Posttranslational modification, protein turnover, chaperones]
Probab=37.82 E-value=51 Score=33.71 Aligned_cols=34 Identities=21% Similarity=0.429 Sum_probs=27.3
Q ss_pred cEeEEEEEEeCCCCCcEEEEEEcCCCCCCCCCChHH
Q 037279 273 NLFNFDVMRDARDSNRYLIIDVNYFPGYAKMPGYES 308 (327)
Q Consensus 273 ~l~G~Dvi~~~~~g~~~~VidVN~fPg~~g~~~~~~ 308 (327)
++||+|+++++. ++ ++.||||++|.++.--....
T Consensus 378 ElyG~DfliD~~-lk-pwLiEiNssP~~~~t~~~d~ 411 (497)
T KOG2157|consen 378 ELYGFDFLIDEA-LK-PWLIEINASPDLTQTTKNDA 411 (497)
T ss_pred hhhCcceeecCC-CC-eEEEEeecCCcccccchhhh
Confidence 589999999974 54 89999999999986554433
No 121
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=36.90 E-value=1.8e+02 Score=23.18 Aligned_cols=75 Identities=15% Similarity=0.151 Sum_probs=42.8
Q ss_pred EEEEeCCccccccchhHHHHHHHhCCCeEEEeCCCCC----------cccc-CCccEEEEccCchhHHHHHHHHHHhCCC
Q 037279 12 IGYALAPKKGQSLIQPSLLTKASERGIDLIPIDPIKP----------LVEQ-GPFDCIVHKLYGPDWTRQLQQFSSQNPN 80 (327)
Q Consensus 12 vG~~~~~~k~~~~~~~~l~~~~~~~gi~~~~ld~~~~----------l~~q-~~~Dvilhk~~~~~~~~~l~~~~~~~p~ 80 (327)
|.+.-...+..++. .++.+...++|+++.++++... +.+. ++.|+++.=.........+++..+...+
T Consensus 3 iAVvGaS~~~~~~g-~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~~~~~~~~v~~~~~~g~~ 81 (116)
T PF13380_consen 3 IAVVGASDNPGKFG-YRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVPPDKVPEIVDEAAALGVK 81 (116)
T ss_dssp EEEET--SSTTSHH-HHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-HHHHHHHHHHHHHHT-S
T ss_pred EEEEcccCCCCChH-HHHHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEcCHHHHHHHHHHHHHcCCC
Confidence 34444344555554 3456666779999999999852 3332 5778888776655556667777666666
Q ss_pred CcccCcH
Q 037279 81 VPIIDSP 87 (327)
Q Consensus 81 v~Vid~~ 87 (327)
..++-|-
T Consensus 82 ~v~~~~g 88 (116)
T PF13380_consen 82 AVWLQPG 88 (116)
T ss_dssp EEEE-TT
T ss_pred EEEEEcc
Confidence 5566655
No 122
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=35.73 E-value=5.4 Score=38.28 Aligned_cols=107 Identities=16% Similarity=0.136 Sum_probs=62.2
Q ss_pred CCcccCcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEEEeeccCCCCccceeeEE
Q 037279 80 NVPIIDSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKPLVADGSVKSHQMYL 159 (327)
Q Consensus 80 ~v~Vid~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~VvKP~~~~Gs~~sh~m~l 159 (327)
.+.-+|.-.....+.++..+...+.+ .++..|.-.-....+...+.+.+-+++|.|.||+.| | +=.|..
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~vvfp~lhG~~gEDg~iqg~le~~giPyvg~gv~~--S--a~~mdk 104 (317)
T COG1181 36 DVTPVDITEAGLWMLDKEVTKRVLQK-------ADVVFPVLHGPYGEDGTIQGLLELLGIPYVGKGVLA--S--AGAMDK 104 (317)
T ss_pred eeEEEeccccceEEeccccchhhccc-------CCEEEEeCCCCCCCCchHHHHHHHhCCCEecCchhh--h--hhcccH
Confidence 45556666667777777666655555 233333322122222223334677899999999997 3 223333
Q ss_pred EeC-----hhhhccCC---------CceEEEeccCCCCeEEEEEEECCEEEEEE
Q 037279 160 IFD-----SQGLESMT---------APFVLQEFVNHGGFIFKVYVAGMNVKCVK 199 (327)
Q Consensus 160 v~~-----~~~l~~l~---------~p~vvQefI~h~g~d~KV~ViG~~v~~~~ 199 (327)
+.. ..++.... ...++|+|+ .|.+|++||.+++..++.
T Consensus 105 ~~~K~~~~~~g~~~a~~~~~~~~~~~~~~~e~~~--~~l~~p~~Vkp~~~gSSv 156 (317)
T COG1181 105 IVTKRLFKAEGLPVAPYVALTRDEYSSVIVEEVE--EGLGFPLFVKPAREGSSV 156 (317)
T ss_pred HHHHHHHHHCCCCccceeeeecccchhHHHHHhh--cccCCCEEEEcCCcccee
Confidence 332 23343221 245566777 478899999999997644
No 123
>PF04556 DpnII: DpnII restriction endonuclease; InterPro: IPR007637 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry is found in type II restriction enzymes such as DpmII (3.1.21.4 from EC), which recognises the double-stranded unmethylated sequence GATC and cleave before G-1 [], where it encompasess the full length of the protein. It is also found in a number of proteins of unknown function, where it is located adjacent to a DNA adenine-specific methyltransferase domain (IPR012327 from INTERPRO).; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system
Probab=35.63 E-value=62 Score=30.66 Aligned_cols=34 Identities=21% Similarity=0.563 Sum_probs=25.8
Q ss_pred HHHHHHhCCcE------eEEEEEEeCCCCCcEEEEEEcCCCC
Q 037279 264 RGMREALGLNL------FNFDVMRDARDSNRYLIIDVNYFPG 299 (327)
Q Consensus 264 ~~~~~~lGl~l------~G~Dvi~~~~~g~~~~VidVN~fPg 299 (327)
..+.+.+|.++ =-||+++.. ++..|+||+|++-|
T Consensus 179 ~~i~~~~~~d~~~~k~~KrFDFvi~~--~~k~y~IE~NFY~~ 218 (286)
T PF04556_consen 179 SEIKEKWGIDLSVGKSEKRFDFVIKT--NKKIYLIETNFYGS 218 (286)
T ss_pred HHHHHHhCCcccCCCCceEEEEEEEc--CCEEEEEEEeeecC
Confidence 44566677777 459999964 34689999999988
No 124
>PF12058 DUF3539: Protein of unknown function (DUF3539); InterPro: IPR021926 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved NHP sequence motif. ; PDB: 3N5B_B 2XKO_C 2XG8_F.
Probab=35.58 E-value=23 Score=27.33 Aligned_cols=20 Identities=20% Similarity=0.569 Sum_probs=16.5
Q ss_pred EeccCCC--CeEEEEEEECCEE
Q 037279 176 QEFVNHG--GFIFKVYVAGMNV 195 (327)
Q Consensus 176 QefI~h~--g~d~KV~ViG~~v 195 (327)
+.|+||+ |-+|+|..+|+.-
T Consensus 3 E~YLNHPtFGlLy~Vc~~~e~~ 24 (88)
T PF12058_consen 3 ETYLNHPTFGLLYRVCPVDEGQ 24 (88)
T ss_dssp --EEEETTTEEEEEEEEECTTE
T ss_pred cccccCCccchheeeeeCCCcc
Confidence 5799998 8999999999865
No 125
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=33.16 E-value=1.9e+02 Score=28.02 Aligned_cols=70 Identities=16% Similarity=0.215 Sum_probs=44.9
Q ss_pred ceEEEEEeCCcc-ccccchhHHHHHHHhCCCeEEEeCCCCC-cccc-----------CCccEEEEccCchhHHHHHHHHH
Q 037279 9 RFRIGYALAPKK-GQSLIQPSLLTKASERGIDLIPIDPIKP-LVEQ-----------GPFDCIVHKLYGPDWTRQLQQFS 75 (327)
Q Consensus 9 ~~~vG~~~~~~k-~~~~~~~~l~~~~~~~gi~~~~ld~~~~-l~~q-----------~~~Dvilhk~~~~~~~~~l~~~~ 75 (327)
..+|+.+|.+.= +-++ +|..++.+.|..++.+|.+.. +... .=+|+|+-|...+.....+.
T Consensus 45 gk~l~~lF~epSTRTR~---SFE~A~~~LGg~~i~l~~~~s~~~kgEsl~Dtarvls~y~D~iviR~~~~~~~~~~a--- 118 (334)
T PRK12562 45 GKNIALIFEKDSTRTRC---SFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGHGQEVVETLA--- 118 (334)
T ss_pred CCEEEEEECCCCchhHH---HHHHHHHHcCCeEEEeCCccccCCCCcCHHHHHHHHHHhCCEEEEECCchHHHHHHH---
Confidence 566777776532 2222 355788999999999987642 1110 12799999976655333333
Q ss_pred HhCCCCcccC
Q 037279 76 SQNPNVPIID 85 (327)
Q Consensus 76 ~~~p~v~Vid 85 (327)
++.++||||
T Consensus 119 -~~~~vPVIN 127 (334)
T PRK12562 119 -EYAGVPVWN 127 (334)
T ss_pred -HhCCCCEEE
Confidence 345799999
No 126
>COG0754 Gsp Glutathionylspermidine synthase [Amino acid transport and metabolism]
Probab=32.93 E-value=26 Score=34.19 Aligned_cols=176 Identities=21% Similarity=0.263 Sum_probs=91.9
Q ss_pred ceEEEEEeCC-ccccccchhHHHHHHHhCCCeEEEeCCCCC-ccccCCc----cEEEE---ccCchh--HHHHHHHHHHh
Q 037279 9 RFRIGYALAP-KKGQSLIQPSLLTKASERGIDLIPIDPIKP-LVEQGPF----DCIVH---KLYGPD--WTRQLQQFSSQ 77 (327)
Q Consensus 9 ~~~vG~~~~~-~k~~~~~~~~l~~~~~~~gi~~~~ld~~~~-l~~q~~~----Dvilh---k~~~~~--~~~~l~~~~~~ 77 (327)
+.+++++..+ ..++....+-|...+.+.|++-..+..+.- +.+.|-| +=+|. |+..=. ....+.+- -+
T Consensus 170 ~~~~~~s~~~D~~Ed~~tv~~LqD~a~~AG~et~fl~i~~igl~e~G~f~D~~n~~i~~lfKlypwE~m~~e~~~~~-l~ 248 (387)
T COG0754 170 RDRMGFSICQDTAEDRGTVQYLQDCAQEAGFETEFLYIDDIGLGEDGQFTDLDNQVIERLFKLYPWEDMLREELAQN-LE 248 (387)
T ss_pred cCceEEEeecChhhhhhHHHHHHHHHHhcCcccceeeehhcccCccceeecCCcchHhHHHhhcCHHHHHHHHHHHH-hc
Confidence 3445555444 455665555577888889987665544421 1121211 11121 222111 12222232 34
Q ss_pred CCCCcccCcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEEEeeccCCCCccceee
Q 037279 78 NPNVPIIDSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKPLVADGSVKSHQM 157 (327)
Q Consensus 78 ~p~v~Vid~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~VvKP~~~~Gs~~sh~m 157 (327)
.+++.+|+|+ =-.++.|| .++-+|-+. .-++.---|....-... . ..+---|.||+.| . ++-++
T Consensus 249 ~~~~~~lEPa-Wk~ilsNK-~lLplLW~~---fPnHp~LL~t~F~~~~~---~-----~~~~~yv~KPl~g--R-EGaNv 312 (387)
T COG0754 249 NARTIFLEPA-WKSILSNK-ALLPLLWER---FPNHPNLLPTYFEPDDE---E-----KLGESYVRKPLFG--R-EGANV 312 (387)
T ss_pred CCCcEEechh-HHHHhccc-cHHHHHHHh---CCCCcccccccCCCCcc---c-----cchhhhhcccccc--c-cCCCe
Confidence 5789999987 45567888 555666541 01112222222211111 0 1111268999997 3 56689
Q ss_pred EEEeCh-hhhccC-----CCceEEEeccCCCCe-----EEEEEEECCEEEEE-Eec
Q 037279 158 YLIFDS-QGLESM-----TAPFVLQEFVNHGGF-----IFKVYVAGMNVKCV-KRK 201 (327)
Q Consensus 158 ~lv~~~-~~l~~l-----~~p~vvQefI~h~g~-----d~KV~ViG~~v~~~-~R~ 201 (327)
.++.+. +.+... +.+++.|||++-+-. .+--+||||+..++ .|.
T Consensus 313 ~i~~~~~~~~~~~~G~Yg~eg~IyQe~~~Lpk~~~~Y~~vgSw~v~d~~cG~glRe 368 (387)
T COG0754 313 SIFEDAGKVLDKADGPYGEEGMIYQEFYPLPKFGDSYYQVGSWVVGDEACGIGLRE 368 (387)
T ss_pred eEEecCCceeecCCCCccccchhhhhhccCcccCCeeEEEEEEEECcccceeeecc
Confidence 999874 444433 357999999986532 23335777777664 353
No 127
>PF08886 GshA: Glutamate-cysteine ligase; InterPro: IPR011718 This entry represents a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria []. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.; PDB: 3K1T_A.
Probab=31.63 E-value=1.8e+02 Score=28.82 Aligned_cols=59 Identities=17% Similarity=0.097 Sum_probs=38.2
Q ss_pred c-EEEeeccCCCCccceeeEEEeChhhhccCC----------------CceEEEeccCCCC------eEEEEEEECCEEE
Q 037279 140 P-VIAKPLVADGSVKSHQMYLIFDSQGLESMT----------------APFVLQEFVNHGG------FIFKVYVAGMNVK 196 (327)
Q Consensus 140 P-~VvKP~~~~Gs~~sh~m~lv~~~~~l~~l~----------------~p~vvQefI~h~g------~d~KV~ViG~~v~ 196 (327)
| ++||...| + -+-|+..|.+.+++..++ .-+++||=|.+-- -.-=||.||..++
T Consensus 261 PfV~VKAD~G--T-YGMGImtV~~~~ev~~LNrK~RnKM~~~Keg~~v~~VIIQEGV~T~E~~~~avAEPVVYmid~~vv 337 (404)
T PF08886_consen 261 PFVFVKADAG--T-YGMGIMTVKSGDEVLGLNRKQRNKMSVIKEGLEVSEVIIQEGVYTFERFNDAVAEPVVYMIDRYVV 337 (404)
T ss_dssp --EEEEEE-G--G-G-EEEEEESSGGGGSS--HHHHHHHH-SSSSS---EEEEEE-----EEETTEEEEEEEEEETTEEE
T ss_pred ceEEEEcCCC--C-CCceEEEecCHHHHHHHhHHHhhhhhhhcCCCccceeEEecCcchhhhhCCccccceEEEECCEEE
Confidence 5 78997665 5 778889999999987663 2599999887521 2345999999998
Q ss_pred E-EEec
Q 037279 197 C-VKRK 201 (327)
Q Consensus 197 ~-~~R~ 201 (327)
+ .+|.
T Consensus 338 ggfyRv 343 (404)
T PF08886_consen 338 GGFYRV 343 (404)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 7 6675
No 128
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=29.96 E-value=2e+02 Score=27.82 Aligned_cols=70 Identities=17% Similarity=0.268 Sum_probs=44.6
Q ss_pred ceEEEEEeCCcc-ccccchhHHHHHHHhCCCeEEEeCCCCCccccC------------CccEEEEccCchhHHHHHHHHH
Q 037279 9 RFRIGYALAPKK-GQSLIQPSLLTKASERGIDLIPIDPIKPLVEQG------------PFDCIVHKLYGPDWTRQLQQFS 75 (327)
Q Consensus 9 ~~~vG~~~~~~k-~~~~~~~~l~~~~~~~gi~~~~ld~~~~l~~q~------------~~Dvilhk~~~~~~~~~l~~~~ 75 (327)
..+++.+|.+.= +-++ +|..++.+.|-.++.+|.+..-...| =+|+|+-|...+.....+.
T Consensus 45 gk~l~~lF~epSTRTR~---SFe~A~~~LGg~~i~l~~~~s~~~kgEsl~Dtarvls~y~D~Iv~R~~~~~~~~~~a--- 118 (336)
T PRK03515 45 GKNIALIFEKDSTRTRC---SFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGYGQEIVETLA--- 118 (336)
T ss_pred CCEEEEEecCCChhHHH---HHHHHHHHcCCcEEEeCCccccCCCCCCHHHHHHHHHHhCcEEEEEeCChHHHHHHH---
Confidence 566777776532 2222 35678899999999998764211111 2699999976665444333
Q ss_pred HhCCCCcccC
Q 037279 76 SQNPNVPIID 85 (327)
Q Consensus 76 ~~~p~v~Vid 85 (327)
++.++||||
T Consensus 119 -~~~~vPVIN 127 (336)
T PRK03515 119 -EYAGVPVWN 127 (336)
T ss_pred -HhCCCCEEE
Confidence 345799999
No 129
>PF08532 Glyco_hydro_42M: Beta-galactosidase trimerisation domain; InterPro: IPR013738 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is non catalytic domain B of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. This domain is related to glutamine amidotransferase enzymes, but the catalytic residues are replaced by non functional amino acids. This domain is involved in trimerisation. ; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process; PDB: 1KWK_A 1KWG_A.
Probab=28.77 E-value=71 Score=28.27 Aligned_cols=66 Identities=15% Similarity=0.321 Sum_probs=34.6
Q ss_pred HHHHHHhCCCeEEEeCCCCCccccCCccEEE---EccCchhHHHHHHHHHHhCCCCcccCcHHHHHHhcCHHH
Q 037279 29 LLTKASERGIDLIPIDPIKPLVEQGPFDCIV---HKLYGPDWTRQLQQFSSQNPNVPIIDSPDSIERLHNRIS 98 (327)
Q Consensus 29 l~~~~~~~gi~~~~ld~~~~l~~q~~~Dvil---hk~~~~~~~~~l~~~~~~~p~v~Vid~~~ai~~~~dR~~ 98 (327)
+-+++.++|+.+..|+++.+++ ++.+++ ..+.++...+++.+|++. .|..++.+......-.++..
T Consensus 35 ~y~al~~~gi~vDvv~~~~dL~---~Ykllv~P~~~~l~~~~~~~L~~yV~~-GG~li~~~~tg~~d~~~~~~ 103 (207)
T PF08532_consen 35 WYRALRELGIPVDVVSPDDDLS---GYKLLVLPSLYILSPEFAERLRAYVEN-GGTLILTPRTGVKDENGRVR 103 (207)
T ss_dssp HHHHHHTTT--EEEE-TTS--T---T-SEEEES--SC--HHH---HHHHHT--SS-EEE-TTTT-B-TTS---
T ss_pred HHHHHHHcCCceEEecCcCCcc---cCcEEEEeeEEEEChHHHHHHHHHHHC-CCEEEEEcccCCcCCCCcCc
Confidence 4568899999999999998665 467776 333456678889999766 57878887766666666543
No 130
>KOG2799 consensus Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=27.85 E-value=1e+02 Score=30.37 Aligned_cols=63 Identities=19% Similarity=0.236 Sum_probs=43.8
Q ss_pred HHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccC-CCcEEEeec-cCCC-------CccceeeEEEeChhhhccCC
Q 037279 100 LEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKL-TFPVIAKPL-VADG-------SVKSHQMYLIFDSQGLESMT 170 (327)
Q Consensus 100 ~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l-~~P~VvKP~-~~~G-------s~~sh~m~lv~~~~~l~~l~ 170 (327)
..+|.+ .|+.+|..++..+++++.+.. ..| .--+|+|.. .+|| |.--.|+-+|+++++.+.+.
T Consensus 31 ~~ll~~-------~Gv~vp~g~vA~speEA~~~a-kklg~kdlVikAQ~lAgGRgKGtF~SglkgGV~iVf~p~Eak~va 102 (434)
T KOG2799|consen 31 AALLRK-------YGINVPLGYVAKSPEEAFAIA-KKLGSKDLVIKAQVLAGGRGKGTFDSGLKGGVKIVFSPQEAKAVA 102 (434)
T ss_pred HHHHHH-------cCCCCCCCcccCCHHHHHHHH-HHhCCcceEEEeeecccCcccCCcCcCcCCceEEEeChHHHHHHH
Confidence 455555 799999999999998876654 222 334999985 3332 22236899999987776553
No 131
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=26.83 E-value=2.3e+02 Score=27.42 Aligned_cols=70 Identities=14% Similarity=0.214 Sum_probs=44.4
Q ss_pred ceEEEEEeCCcc-ccccchhHHHHHHHhCCCeEEEeCCCCC-cc------cc-----CCccEEEEccCchhHHHHHHHHH
Q 037279 9 RFRIGYALAPKK-GQSLIQPSLLTKASERGIDLIPIDPIKP-LV------EQ-----GPFDCIVHKLYGPDWTRQLQQFS 75 (327)
Q Consensus 9 ~~~vG~~~~~~k-~~~~~~~~l~~~~~~~gi~~~~ld~~~~-l~------~q-----~~~Dvilhk~~~~~~~~~l~~~~ 75 (327)
+.+++.+|.+.= +-++ +|..++.+.|..++.+|+... +. +- .=+|+|+-|...+.....+.
T Consensus 46 gk~v~~lF~epSTRTR~---SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~Dt~rvls~y~D~iviR~~~~~~~~~~a--- 119 (331)
T PRK02102 46 GKNIALIFEKTSTRTRC---AFEVAAIDLGAHVTYLGPNDSQLGKKESIEDTARVLGRMYDGIEYRGFKQEIVEELA--- 119 (331)
T ss_pred CCEEEEEeCCCChhHHH---HHHHHHHHcCCCEEEcCcccccCCCCcCHHHHHHHHhhcCCEEEEECCchHHHHHHH---
Confidence 566777776532 3332 356789999999999987632 11 10 12699999976554333333
Q ss_pred HhCCCCcccC
Q 037279 76 SQNPNVPIID 85 (327)
Q Consensus 76 ~~~p~v~Vid 85 (327)
++.++||||
T Consensus 120 -~~~~vPVIN 128 (331)
T PRK02102 120 -KYSGVPVWN 128 (331)
T ss_pred -HhCCCCEEE
Confidence 345799999
No 132
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=26.57 E-value=2.6e+02 Score=27.00 Aligned_cols=71 Identities=14% Similarity=0.247 Sum_probs=44.9
Q ss_pred CceEEEEEeCCcc-ccccchhHHHHHHHhCCCeEEEeCCCCC-cc------cc-----CCccEEEEccCchhHHHHHHHH
Q 037279 8 QRFRIGYALAPKK-GQSLIQPSLLTKASERGIDLIPIDPIKP-LV------EQ-----GPFDCIVHKLYGPDWTRQLQQF 74 (327)
Q Consensus 8 ~~~~vG~~~~~~k-~~~~~~~~l~~~~~~~gi~~~~ld~~~~-l~------~q-----~~~Dvilhk~~~~~~~~~l~~~ 74 (327)
...+++.+|.+.= +-++ +|..++.+.|-.++.+|.+.. +. +- .=+|+|+-|...+.....+.+
T Consensus 44 ~gk~l~~lF~epSTRTR~---SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~y~D~iviR~~~~~~~~~~a~- 119 (332)
T PRK04284 44 KGKNIALIFEKDSTRTRC---AFEVAAYDQGAHVTYLGPTGSQMGKKESTKDTARVLGGMYDGIEYRGFSQRTVETLAE- 119 (332)
T ss_pred CCCEEEEEecCCChhHHH---HHHHHHHHcCCeEEEcCCccccCCCCcCHHHHHHHHHHhCCEEEEecCchHHHHHHHH-
Confidence 3566777776532 2222 356788999999999987742 11 10 127999999766543333333
Q ss_pred HHhCCCCcccC
Q 037279 75 SSQNPNVPIID 85 (327)
Q Consensus 75 ~~~~p~v~Vid 85 (327)
+.++||||
T Consensus 120 ---~s~vPVIN 127 (332)
T PRK04284 120 ---YSGVPVWN 127 (332)
T ss_pred ---hCCCCEEE
Confidence 35799999
No 133
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=25.80 E-value=2.7e+02 Score=26.49 Aligned_cols=70 Identities=16% Similarity=0.167 Sum_probs=44.1
Q ss_pred ceEEEEEeCCc-cccccchhHHHHHHHhCCCeEEEeCCCCCcccc------------CCccEEEEccCchhHHHHHHHHH
Q 037279 9 RFRIGYALAPK-KGQSLIQPSLLTKASERGIDLIPIDPIKPLVEQ------------GPFDCIVHKLYGPDWTRQLQQFS 75 (327)
Q Consensus 9 ~~~vG~~~~~~-k~~~~~~~~l~~~~~~~gi~~~~ld~~~~l~~q------------~~~Dvilhk~~~~~~~~~l~~~~ 75 (327)
+.+++.+|.+. =+-++ +|-.++.+.|-+++.++.+..-... .=+|+|+-|...+.....+.
T Consensus 38 gk~~~~lF~epSTRTR~---SFE~A~~~LGg~~i~l~~~~ss~~kgEsl~Dt~~vls~y~D~iviR~~~~~~~~~~a--- 111 (302)
T PRK14805 38 GKSVVMLFEKPSLRTRV---SFDIGINKLGGHCLYLDQQNGALGKRESVADFAANLSCWADAIVARVFSHSTIEQLA--- 111 (302)
T ss_pred CCEEEEEecCCCchHHH---HHHHHHHHcCCcEEECCCCcCcCCCCcCHHHHHHHHHHhCCEEEEeCCChhHHHHHH---
Confidence 46677666653 23222 3557899999999999865321111 12799999976554333333
Q ss_pred HhCCCCcccC
Q 037279 76 SQNPNVPIID 85 (327)
Q Consensus 76 ~~~p~v~Vid 85 (327)
++.++||||
T Consensus 112 -~~~~vPVIN 120 (302)
T PRK14805 112 -EHGSVPVIN 120 (302)
T ss_pred -HhCCCCEEE
Confidence 345799999
No 134
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=25.57 E-value=2.8e+02 Score=26.78 Aligned_cols=71 Identities=15% Similarity=0.271 Sum_probs=45.0
Q ss_pred CceEEEEEeCCcc-ccccchhHHHHHHHhCCCeEEEeCCCCC-cc------cc-----CCccEEEEccCchhHHHHHHHH
Q 037279 8 QRFRIGYALAPKK-GQSLIQPSLLTKASERGIDLIPIDPIKP-LV------EQ-----GPFDCIVHKLYGPDWTRQLQQF 74 (327)
Q Consensus 8 ~~~~vG~~~~~~k-~~~~~~~~l~~~~~~~gi~~~~ld~~~~-l~------~q-----~~~Dvilhk~~~~~~~~~l~~~ 74 (327)
...+|+.+|.+.= +-++ +|..++.+.|-.++.++.+.. +. +- .=+|+|+-|...+.....+.
T Consensus 45 ~gk~v~~lF~epSTRTR~---SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~y~D~iv~R~~~~~~~~~~a-- 119 (334)
T PRK01713 45 KGKNIALIFEKTSTRTRC---AFEVAAYDQGAQVTYIDPNSSQIGHKESMKDTARVLGRMYDAIEYRGFKQSIVNELA-- 119 (334)
T ss_pred CCCEEEEEeCCCCchHHH---HHHHHHHHcCCeEEEcCCccccCCCCcCHHHHHHHHHHhCCEEEEEcCchHHHHHHH--
Confidence 3567777777632 3222 355788999999999987642 11 10 12699999976554343333
Q ss_pred HHhCCCCcccC
Q 037279 75 SSQNPNVPIID 85 (327)
Q Consensus 75 ~~~~p~v~Vid 85 (327)
++.++||||
T Consensus 120 --~~~~vPVIN 128 (334)
T PRK01713 120 --EYAGVPVFN 128 (334)
T ss_pred --HhCCCCEEE
Confidence 335799999
No 135
>KOG2983 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.35 E-value=3.6e+02 Score=25.51 Aligned_cols=32 Identities=28% Similarity=0.298 Sum_probs=23.7
Q ss_pred HHhCCcEeEEEEEEeCCCCCcEEEEEEcCCCCCC
Q 037279 268 EALGLNLFNFDVMRDARDSNRYLIIDVNYFPGYA 301 (327)
Q Consensus 268 ~~lGl~l~G~Dvi~~~~~g~~~~VidVN~fPg~~ 301 (327)
-.+--.=|-|||-++.. + +.++||+|.|-|-+
T Consensus 224 ~kF~dedfvfDVYi~k~-~-kv~lID~Npf~~~T 255 (334)
T KOG2983|consen 224 FKFPDEDFVFDVYITKE-R-KVWLIDFNPFCGST 255 (334)
T ss_pred ccCCCCCeeEEEEecCC-C-cEEEEeccCccCcc
Confidence 33555567899999865 4 48999999997743
No 136
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=25.04 E-value=92 Score=30.88 Aligned_cols=88 Identities=17% Similarity=0.152 Sum_probs=52.9
Q ss_pred chhHHHHHHHhCCC-eEEEeCCCCCcc-------------------------------------ccCCccEEEEccCchh
Q 037279 25 IQPSLLTKASERGI-DLIPIDPIKPLV-------------------------------------EQGPFDCIVHKLYGPD 66 (327)
Q Consensus 25 ~~~~l~~~~~~~gi-~~~~ld~~~~l~-------------------------------------~q~~~Dvilhk~~~~~ 66 (327)
+.+.+.+.|.+.|. ++..+|....+. .+...++|.|-+|...
T Consensus 38 d~~~i~~kA~~~Ga~~~~vvD~r~ef~~~~i~~aI~anA~Yeg~YpL~tsl~RplIa~~~v~~A~~~ga~~vaHG~TgkG 117 (388)
T PF00764_consen 38 DLEAIEEKALKLGASKHIVVDARDEFAEDYIFPAIKANALYEGRYPLSTSLARPLIAKKLVEVAREEGADAVAHGCTGKG 117 (388)
T ss_dssp -HHHHHHHHHHHT-SEEEEEE-HHHHHHHTHHHHHHTT--BTTTB--CCCCHHHHHHHHHHHHHHHHT-SEEE----TTS
T ss_pred HHHHHHHHHHhcCCceeeecchHHHHHHHHHHHHHHHHHHhCCCccccccchHHHHHHHHHHHHHHcCCeEEeccCCcCC
Confidence 45577788899997 999999764211 0125799999987632
Q ss_pred H-HHHHHHHH-HhCCCCcccCcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEE
Q 037279 67 W-TRQLQQFS-SQNPNVPIIDSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQV 121 (327)
Q Consensus 67 ~-~~~l~~~~-~~~p~v~Vid~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~ 121 (327)
. .-+++.++ ...|++.|+-|..-.... |-.....+++ +|||+|.+.
T Consensus 118 NDqvRFe~~~~al~P~l~viaP~Rd~~~~--R~~~i~ya~~-------~gIpv~~~~ 165 (388)
T PF00764_consen 118 NDQVRFELSIRALAPELKVIAPWRDWEFS--REEEIEYAKK-------HGIPVPVTK 165 (388)
T ss_dssp SHHHHHHHHHHHHSTTSEEE-GGGHHHHH--HHHHHHHHHH-------TT----SS-
T ss_pred CchhHHHHHHHHhCcCCcEecccchhhhh--HHHHHHHHHH-------cCCCCCCCC
Confidence 1 22344333 467999999999999988 8888888888 689888774
No 137
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=24.74 E-value=2.9e+02 Score=26.24 Aligned_cols=71 Identities=14% Similarity=0.231 Sum_probs=45.0
Q ss_pred CceEEEEEeCCcc-ccccchhHHHHHHHhCCCeEEEeCCCCC-cc------cc-----CCccEEEEccCchhHHHHHHHH
Q 037279 8 QRFRIGYALAPKK-GQSLIQPSLLTKASERGIDLIPIDPIKP-LV------EQ-----GPFDCIVHKLYGPDWTRQLQQF 74 (327)
Q Consensus 8 ~~~~vG~~~~~~k-~~~~~~~~l~~~~~~~gi~~~~ld~~~~-l~------~q-----~~~Dvilhk~~~~~~~~~l~~~ 74 (327)
...+|+.+|.+.= +-++ +|..++.+.|-+++.++.+.. +. +- .=+|+|+-|........ ++
T Consensus 42 ~gk~v~~lF~e~STRTR~---SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~Dt~~~l~~~~D~iv~R~~~~~~~~---~~ 115 (304)
T PRK00779 42 KGKTLAMIFEKPSTRTRV---SFEVGMAQLGGHAIFLSPRDTQLGRGEPIEDTARVLSRYVDAIMIRTFEHETLE---EL 115 (304)
T ss_pred CCCEEEEEecCCCchHHH---HHHHHHHHcCCcEEEECcccccCCCCcCHHHHHHHHHHhCCEEEEcCCChhHHH---HH
Confidence 3566777776532 3222 356889999999999987642 11 10 12799998876554333 33
Q ss_pred HHhCCCCcccC
Q 037279 75 SSQNPNVPIID 85 (327)
Q Consensus 75 ~~~~p~v~Vid 85 (327)
+++-++||||
T Consensus 116 -a~~~~vPVIN 125 (304)
T PRK00779 116 -AEYSTVPVIN 125 (304)
T ss_pred -HHhCCCCEEe
Confidence 3445799999
No 138
>PF08886 GshA: Glutamate-cysteine ligase; InterPro: IPR011718 This entry represents a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria []. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.; PDB: 3K1T_A.
Probab=23.21 E-value=1.9e+02 Score=28.68 Aligned_cols=49 Identities=12% Similarity=0.238 Sum_probs=29.0
Q ss_pred CcEeEEEEEEeCCCCCcEEEEEEcCCCC-CCCCC-ChHHHHHHHHHHHHhhccc
Q 037279 272 LNLFNFDVMRDARDSNRYLIIDVNYFPG-YAKMP-GYESIMTDFFLQVLNKSAV 323 (327)
Q Consensus 272 l~l~G~Dvi~~~~~g~~~~VidVN~fPg-~~g~~-~~~~~l~~~~~~~~~~~~~ 323 (327)
--+..||+--. |=.+.-||.|.||| |-++. ++-.+-++++.+.+++-++
T Consensus 25 PfY~SVDlRna---GfKlAPVDtNLFPaGfNNL~~~~~plavqa~~~aiek~cp 75 (404)
T PF08886_consen 25 PFYSSVDLRNA---GFKLAPVDTNLFPAGFNNLNPEFLPLAVQAAMAAIEKICP 75 (404)
T ss_dssp -SEEEEEEEE----SS-EEEEEEESS---GGGS-GGGHHHHHHHHHHHHHHHST
T ss_pred CceEEEEeccc---CCccccccccCCcCcccCCCHHHHHHHHHHHHHHHHHhCc
Confidence 34567998754 33588999999997 76654 3555555666666666554
No 139
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=22.66 E-value=3.7e+02 Score=25.48 Aligned_cols=71 Identities=15% Similarity=0.234 Sum_probs=44.6
Q ss_pred CceEEEEEeCCc-cccccchhHHHHHHHhCCCeEEEeCCCCCcccc------------CCccEEEEccCchhHHHHHHHH
Q 037279 8 QRFRIGYALAPK-KGQSLIQPSLLTKASERGIDLIPIDPIKPLVEQ------------GPFDCIVHKLYGPDWTRQLQQF 74 (327)
Q Consensus 8 ~~~~vG~~~~~~-k~~~~~~~~l~~~~~~~gi~~~~ld~~~~l~~q------------~~~Dvilhk~~~~~~~~~l~~~ 74 (327)
...+++.+|-+. =+-++ +|..++.+.|-.+..+|....-... .=+|+|+-|.........+.
T Consensus 38 ~gk~v~~lF~epSTRTR~---SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~Dt~~vls~y~D~iv~R~~~~~~~~~~a-- 112 (304)
T TIGR00658 38 KGKTLALIFEKPSTRTRV---SFEVAAYQLGGHPLYLNPNDLQLGRGESIKDTARVLSRYVDGIMARVYKHEDVEELA-- 112 (304)
T ss_pred CCCEEEEEecCCCcchHH---HHHHHHHHcCCCEEEeCCccccCCCCCCHHHHHHHHHHhCCEEEEECCChHHHHHHH--
Confidence 356677666653 23332 3557889999999999876421111 12799999976554333333
Q ss_pred HHhCCCCcccC
Q 037279 75 SSQNPNVPIID 85 (327)
Q Consensus 75 ~~~~p~v~Vid 85 (327)
++-++||||
T Consensus 113 --~~~~vPVIN 121 (304)
T TIGR00658 113 --KYASVPVIN 121 (304)
T ss_pred --HhCCCCEEE
Confidence 345799999
No 140
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=22.48 E-value=3.8e+02 Score=25.44 Aligned_cols=81 Identities=19% Similarity=0.175 Sum_probs=49.3
Q ss_pred ceEEEEEeCCc-cccccchhHHHHHHHhCCCeEEEeCC-CCC-cc------cc-----CCccEEEEccCchhHHHHHHHH
Q 037279 9 RFRIGYALAPK-KGQSLIQPSLLTKASERGIDLIPIDP-IKP-LV------EQ-----GPFDCIVHKLYGPDWTRQLQQF 74 (327)
Q Consensus 9 ~~~vG~~~~~~-k~~~~~~~~l~~~~~~~gi~~~~ld~-~~~-l~------~q-----~~~Dvilhk~~~~~~~~~l~~~ 74 (327)
..+|+.+|-+. =+-++ +|..++.+.|-..+.++. +.. +. +. .=+|+|+-|...+.....+.
T Consensus 39 gk~v~~lF~~pSTRTR~---SFe~A~~~LGg~~i~l~~~~~s~~~kgEsi~Dta~vls~y~D~iviR~~~~~~~~~~a-- 113 (301)
T TIGR00670 39 GKILANLFFEPSTRTRL---SFETAMKRLGGDVVNFSDSETSSVAKGETLADTIKTLSGYSDAIVIRHPLEGAARLAA-- 113 (301)
T ss_pred CCEEEEEeccCCchhHh---HHHHHHHHcCCcEEEcCCCCcccCCCCcCHHHHHHHHHHhCCEEEEECCchhHHHHHH--
Confidence 45666666543 23332 355789999999999998 421 11 10 12699999976654333333
Q ss_pred HHhCCCCcccCcHH-----HHHHhcCH
Q 037279 75 SSQNPNVPIIDSPD-----SIERLHNR 96 (327)
Q Consensus 75 ~~~~p~v~Vid~~~-----ai~~~~dR 96 (327)
++.++||||-.. -.+.+.|=
T Consensus 114 --~~s~vPVINa~~g~~~HPtQ~LaDl 138 (301)
T TIGR00670 114 --EVSEVPVINAGDGSNQHPTQTLLDL 138 (301)
T ss_pred --hhCCCCEEeCCCCCCCCcHHHHHHH
Confidence 345799999543 34555553
No 141
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=22.27 E-value=4.1e+02 Score=25.54 Aligned_cols=73 Identities=15% Similarity=0.226 Sum_probs=49.4
Q ss_pred CceEEEEEeCCcc-ccccchhHHHHHHHhCCCeEEEeCCCCC-c------ccc----C-CccEEEEccCchhHHHHHHHH
Q 037279 8 QRFRIGYALAPKK-GQSLIQPSLLTKASERGIDLIPIDPIKP-L------VEQ----G-PFDCIVHKLYGPDWTRQLQQF 74 (327)
Q Consensus 8 ~~~~vG~~~~~~k-~~~~~~~~l~~~~~~~gi~~~~ld~~~~-l------~~q----~-~~Dvilhk~~~~~~~~~l~~~ 74 (327)
....++..|...= +-++. |--++...|-+...++++.. + .+- + =+|+|.-|...+.....+.
T Consensus 43 ~gk~laliFeK~STRTR~S---Feva~~qlGg~~~~l~~~~~Qlgr~Esi~DTArVLsr~~D~I~~R~~~~~~ve~lA-- 117 (310)
T COG0078 43 KGKNLALIFEKTSTRTRVS---FEVAATQLGGHAIYLGPGDSQLGRGESIKDTARVLSRMVDAIMIRGFSHETLEELA-- 117 (310)
T ss_pred CCceEEEEecCCCchhhhh---HHHHHHHcCCCeEEeCCCccccCCCCcHHHHHHHHHhhhheEEEecccHHHHHHHH--
Confidence 3678888887632 33333 44688999999999998852 2 111 1 3699999988776444443
Q ss_pred HHhCCCCcccCcH
Q 037279 75 SSQNPNVPIIDSP 87 (327)
Q Consensus 75 ~~~~p~v~Vid~~ 87 (327)
++.+|||||-+
T Consensus 118 --~~s~VPViNgL 128 (310)
T COG0078 118 --KYSGVPVINGL 128 (310)
T ss_pred --HhCCCceEccc
Confidence 45689999955
No 142
>PRK03094 hypothetical protein; Provisional
Probab=21.39 E-value=1.8e+02 Score=22.23 Aligned_cols=34 Identities=12% Similarity=0.236 Sum_probs=25.7
Q ss_pred HHHHHHHhCCCeEEEeCCCCCccccCCccEEEEccCc
Q 037279 28 SLLTKASERGIDLIPIDPIKPLVEQGPFDCIVHKLYG 64 (327)
Q Consensus 28 ~l~~~~~~~gi~~~~ld~~~~l~~q~~~Dvilhk~~~ 64 (327)
.+.++++++|.+++.|+-..+. .++|+++..-.+
T Consensus 12 ~i~~~L~~~GYeVv~l~~~~~~---~~~Da~VitG~d 45 (80)
T PRK03094 12 DVQQALKQKGYEVVQLRSEQDA---QGCDCCVVTGQD 45 (80)
T ss_pred HHHHHHHHCCCEEEecCccccc---CCcCEEEEeCCC
Confidence 6889999999999999754433 367888866544
No 143
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=21.02 E-value=4.2e+02 Score=25.17 Aligned_cols=73 Identities=21% Similarity=0.239 Sum_probs=47.4
Q ss_pred CceEEEEEeCCc-cccccchhHHHHHHHhCCCeEEEeCCCCC-------cccc-----C-CccEEEEccCchhHHHHHHH
Q 037279 8 QRFRIGYALAPK-KGQSLIQPSLLTKASERGIDLIPIDPIKP-------LVEQ-----G-PFDCIVHKLYGPDWTRQLQQ 73 (327)
Q Consensus 8 ~~~~vG~~~~~~-k~~~~~~~~l~~~~~~~gi~~~~ld~~~~-------l~~q-----~-~~Dvilhk~~~~~~~~~l~~ 73 (327)
...+++.+|.+. =+-++ +|..++.+.|-....++.... +.+. . .+|+|+-|...+.....+.+
T Consensus 44 ~gk~~~~lF~~pSTRTR~---SFe~A~~~LGg~~i~l~~~~~~~~kgEs~~Dta~vls~y~~D~iv~R~~~~~~~~~~a~ 120 (305)
T PRK00856 44 RGKTVANLFFEPSTRTRL---SFELAAKRLGADVINFSASTSSVSKGETLADTIRTLSAMGADAIVIRHPQSGAARLLAE 120 (305)
T ss_pred CCcEEEEEeccCCcchHH---HHHHHHHHcCCcEEEeCCCcccCCCCcCHHHHHHHHHhcCCCEEEEeCCChHHHHHHHH
Confidence 456677666543 23332 356889999999999987642 1111 1 27999999776655544444
Q ss_pred HHHhCCCCcccCcH
Q 037279 74 FSSQNPNVPIIDSP 87 (327)
Q Consensus 74 ~~~~~p~v~Vid~~ 87 (327)
+ ..+||||-.
T Consensus 121 ~----~~vPVINa~ 130 (305)
T PRK00856 121 S----SDVPVINAG 130 (305)
T ss_pred H----CCCCEEECC
Confidence 4 579999954
No 144
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=20.87 E-value=2.8e+02 Score=25.33 Aligned_cols=36 Identities=6% Similarity=0.188 Sum_probs=22.6
Q ss_pred EEEEEeCCcc-ccccc---hhHHHHHHHhCCCeEEEeCCC
Q 037279 11 RIGYALAPKK-GQSLI---QPSLLTKASERGIDLIPIDPI 46 (327)
Q Consensus 11 ~vG~~~~~~k-~~~~~---~~~l~~~~~~~gi~~~~ld~~ 46 (327)
+||+.++... ...++ ++-+.++.++.|+++..++..
T Consensus 1 kva~l~~g~~~D~~~n~~~~~G~~~~~~~~gv~~~~~e~~ 40 (258)
T cd06353 1 KVAFVYVGPIGDQGWNYAHDEGRKAAEKALGVEVTYVENV 40 (258)
T ss_pred CEEEEEeCCCCccchhHHHHHHHHHHHHhcCCeEEEEecC
Confidence 3788887544 22222 233566667789998888765
Done!