Query 037279
Match_columns 327
No_of_seqs 138 out of 536
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 18:05:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037279.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037279hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2q7d_A Inositol-tetrakisphosph 100.0 2.3E-60 7.7E-65 456.6 32.8 306 1-323 12-336 (346)
2 1z2n_X Inositol 1,3,4-trisphos 100.0 5.2E-38 1.8E-42 296.2 24.1 292 8-323 10-323 (324)
3 3t7a_A Inositol pyrophosphate 100.0 2.9E-34 1E-38 266.4 22.0 271 5-318 3-310 (330)
4 1i7n_A Synapsin II; synapse, p 100.0 3.2E-31 1.1E-35 249.9 21.7 242 32-323 34-308 (309)
5 2p0a_A Synapsin-3, synapsin II 100.0 1.2E-30 4.2E-35 248.9 21.5 234 38-322 56-324 (344)
6 1pk8_A RAT synapsin I; ATP bin 100.0 7.7E-30 2.6E-34 247.9 19.5 238 33-322 147-419 (422)
7 1uc8_A LYSX, lysine biosynthes 99.9 1.6E-25 5.4E-30 205.3 20.3 241 25-315 12-276 (280)
8 4eg0_A D-alanine--D-alanine li 99.9 6.9E-25 2.4E-29 206.6 23.6 266 1-306 5-292 (317)
9 3r5x_A D-alanine--D-alanine li 99.9 1.6E-24 5.4E-29 202.4 19.6 267 9-319 3-300 (307)
10 1iow_A DD-ligase, DDLB, D-ALA\ 99.9 1.7E-23 5.9E-28 194.5 25.3 252 10-303 3-280 (306)
11 3se7_A VANA; alpha-beta struct 99.9 9.9E-24 3.4E-28 201.4 18.0 254 9-304 3-316 (346)
12 3ln6_A Glutathione biosynthesi 99.9 1.9E-23 6.6E-28 217.7 18.6 255 24-314 428-746 (750)
13 1ehi_A LMDDL2, D-alanine:D-lac 99.9 1.3E-21 4.3E-26 189.2 24.9 258 9-303 3-326 (377)
14 2i87_A D-alanine-D-alanine lig 99.9 2.4E-22 8.1E-27 193.0 18.9 253 9-303 3-316 (364)
15 3k3p_A D-alanine--D-alanine li 99.9 6.3E-22 2.1E-26 192.0 19.6 257 9-303 37-346 (383)
16 3e5n_A D-alanine-D-alanine lig 99.9 2.4E-21 8.2E-26 188.0 21.5 256 8-304 21-345 (386)
17 3tqt_A D-alanine--D-alanine li 99.9 2E-21 6.7E-26 187.8 20.7 214 54-304 98-327 (372)
18 3ln7_A Glutathione biosynthesi 99.9 6.7E-22 2.3E-26 205.9 18.7 257 24-314 433-752 (757)
19 4fu0_A D-alanine--D-alanine li 99.9 1.4E-21 4.7E-26 187.5 19.0 213 54-304 97-323 (357)
20 1e4e_A Vancomycin/teicoplanin 99.9 3.6E-21 1.2E-25 183.2 20.8 255 9-303 3-315 (343)
21 3i12_A D-alanine-D-alanine lig 99.9 3E-20 1E-24 178.7 23.8 255 9-304 3-326 (364)
22 2pvp_A D-alanine-D-alanine lig 99.9 6.3E-21 2.2E-25 183.9 18.5 263 7-316 18-346 (367)
23 2fb9_A D-alanine:D-alanine lig 99.9 1.1E-20 3.6E-25 178.8 19.6 205 54-304 76-296 (322)
24 1gsa_A Glutathione synthetase; 99.8 1.6E-20 5.6E-25 174.5 15.5 251 11-318 3-313 (316)
25 3lwb_A D-alanine--D-alanine li 99.8 9.2E-20 3.1E-24 176.1 16.4 210 54-304 109-341 (373)
26 3ax6_A Phosphoribosylaminoimid 99.8 2.6E-17 8.9E-22 158.2 25.2 225 26-302 13-266 (380)
27 3q2o_A Phosphoribosylaminoimid 99.8 4.5E-17 1.5E-21 157.4 23.9 237 8-302 13-283 (389)
28 3k5i_A Phosphoribosyl-aminoimi 99.8 2.5E-17 8.4E-22 160.4 20.3 244 7-304 22-298 (403)
29 3orq_A N5-carboxyaminoimidazol 99.8 1.4E-16 4.9E-21 153.6 23.9 238 8-302 11-279 (377)
30 4dim_A Phosphoribosylglycinami 99.8 3.7E-17 1.3E-21 158.1 19.3 246 6-304 4-286 (403)
31 3vot_A L-amino acid ligase, BL 99.8 3.3E-16 1.1E-20 152.8 26.0 223 27-303 18-296 (425)
32 3aw8_A PURK, phosphoribosylami 99.7 1.2E-16 3.9E-21 153.1 21.8 225 26-303 11-268 (369)
33 2dwc_A PH0318, 433AA long hypo 99.7 9.8E-17 3.3E-21 156.9 19.9 239 10-303 20-301 (433)
34 2z04_A Phosphoribosylaminoimid 99.7 4.7E-17 1.6E-21 155.5 17.0 220 26-304 13-261 (365)
35 1kjq_A GART 2, phosphoribosylg 99.7 2.1E-16 7.2E-21 152.1 19.6 238 9-303 11-288 (391)
36 3eth_A Phosphoribosylaminoimid 99.7 2E-15 6.8E-20 144.9 24.5 223 26-303 13-248 (355)
37 4ffl_A PYLC; amino acid, biosy 99.7 1.3E-15 4.4E-20 145.5 22.2 206 27-300 14-247 (363)
38 4e4t_A Phosphoribosylaminoimid 99.7 6.6E-16 2.3E-20 151.2 17.9 238 8-302 34-308 (419)
39 2r85_A PURP protein PF1517; AT 99.7 3.7E-15 1.3E-19 139.7 20.6 238 11-300 4-290 (334)
40 3ouz_A Biotin carboxylase; str 99.7 9E-16 3.1E-20 150.8 16.2 223 26-300 18-299 (446)
41 3df7_A Putative ATP-grAsp supe 99.7 1.2E-15 4.1E-20 143.3 15.7 179 53-301 68-252 (305)
42 2vpq_A Acetyl-COA carboxylase; 99.6 2.7E-15 9.1E-20 147.5 16.3 225 26-301 13-296 (451)
43 1a9x_A Carbamoyl phosphate syn 99.6 1.3E-14 4.5E-19 156.9 22.5 226 26-299 30-305 (1073)
44 3vmm_A Alanine-anticapsin liga 99.6 2E-14 7E-19 142.8 21.5 194 54-299 102-332 (474)
45 1ulz_A Pyruvate carboxylase N- 99.6 3.6E-15 1.2E-19 146.5 15.9 225 26-301 14-295 (451)
46 2pn1_A Carbamoylphosphate synt 99.6 3.2E-15 1.1E-19 140.5 14.6 191 54-300 72-275 (331)
47 3lp8_A Phosphoribosylamine-gly 99.6 1.1E-14 3.7E-19 143.5 18.8 201 54-300 83-311 (442)
48 2dzd_A Pyruvate carboxylase; b 99.6 6.9E-15 2.4E-19 145.0 16.6 224 26-300 18-299 (461)
49 2ip4_A PURD, phosphoribosylami 99.6 2E-14 7E-19 139.8 19.7 202 54-301 61-285 (417)
50 3mjf_A Phosphoribosylamine--gl 99.6 1.6E-14 5.4E-19 141.8 18.8 204 54-302 67-298 (431)
51 1vkz_A Phosphoribosylamine--gl 99.6 2E-14 6.9E-19 140.0 19.2 243 8-303 14-295 (412)
52 1a9x_A Carbamoyl phosphate syn 99.6 2.3E-14 7.8E-19 155.1 19.7 240 9-299 559-847 (1073)
53 3glk_A Acetyl-COA carboxylase 99.6 1.2E-14 4.2E-19 146.6 16.3 173 79-300 147-367 (540)
54 3jrx_A Acetyl-COA carboxylase 99.6 1.3E-14 4.3E-19 147.5 16.2 173 79-300 163-383 (587)
55 2w70_A Biotin carboxylase; lig 99.6 8.8E-15 3E-19 143.7 14.4 222 26-300 14-295 (449)
56 2yw2_A Phosphoribosylamine--gl 99.6 2E-14 6.8E-19 140.0 16.5 202 54-302 62-292 (424)
57 2yrx_A Phosphoribosylglycinami 99.6 4.4E-14 1.5E-18 139.0 18.0 241 10-302 22-313 (451)
58 2xcl_A Phosphoribosylamine--gl 99.6 2.6E-14 8.7E-19 139.2 14.1 202 54-302 62-292 (422)
59 3u9t_A MCC alpha, methylcroton 99.5 8.5E-15 2.9E-19 151.3 10.1 224 26-300 40-321 (675)
60 3n6r_A Propionyl-COA carboxyla 99.5 1.4E-14 4.7E-19 149.9 11.0 222 27-300 15-295 (681)
61 2qk4_A Trifunctional purine bi 99.5 5.8E-14 2E-18 138.1 13.3 242 10-302 25-319 (452)
62 3hbl_A Pyruvate carboxylase; T 99.5 3.5E-13 1.2E-17 146.2 19.1 222 26-300 16-297 (1150)
63 2qf7_A Pyruvate carboxylase pr 99.5 1.5E-13 5E-18 149.4 15.5 224 27-301 27-316 (1165)
64 1w96_A ACC, acetyl-coenzyme A 99.5 2.1E-13 7.3E-18 137.8 13.8 174 81-300 158-374 (554)
65 3va7_A KLLA0E08119P; carboxyla 99.5 1.7E-13 5.8E-18 149.3 12.5 224 26-299 43-323 (1236)
66 2pbz_A Hypothetical protein; N 99.2 7E-10 2.4E-14 104.8 16.9 139 11-180 4-167 (320)
67 2r7k_A 5-formaminoimidazole-4- 99.1 5.9E-09 2E-13 100.0 20.1 237 9-299 18-316 (361)
68 2cqy_A Propionyl-COA carboxyla 99.1 9.9E-13 3.4E-17 103.5 -6.3 91 90-192 3-108 (108)
69 3tig_A TTL protein; ATP-grAsp, 98.6 8.5E-07 2.9E-11 85.3 16.0 150 28-192 19-210 (380)
70 1wr2_A Hypothetical protein PH 98.6 5.6E-08 1.9E-12 87.5 5.9 93 93-194 19-130 (238)
71 3ufx_B Succinyl-COA synthetase 97.9 1.8E-05 6.2E-10 76.6 7.6 91 96-195 5-109 (397)
72 2nu8_B SCS-beta, succinyl-COA 97.9 1.8E-05 6E-10 76.5 7.4 93 94-195 3-117 (388)
73 2fp4_B Succinyl-COA ligase [GD 97.7 5.6E-05 1.9E-09 73.1 8.1 91 95-195 4-124 (395)
74 2io8_A Bifunctional glutathion 97.6 0.00038 1.3E-08 71.0 12.3 173 11-202 381-600 (619)
75 3n6x_A Putative glutathionylsp 95.0 0.0096 3.3E-07 58.6 2.6 131 54-194 269-438 (474)
76 2vob_A Trypanothione synthetas 94.4 0.38 1.3E-05 49.1 12.9 173 11-202 397-615 (652)
77 3mwd_A ATP-citrate synthase; A 92.4 0.4 1.4E-05 46.5 8.6 81 115-195 26-128 (425)
78 3pff_A ATP-citrate synthase; p 84.6 1.8 6.3E-05 45.3 7.5 80 116-195 27-128 (829)
79 3jy6_A Transcriptional regulat 45.2 35 0.0012 29.3 5.9 45 1-47 1-47 (276)
80 3nbm_A PTS system, lactose-spe 37.9 1.3E+02 0.0045 22.8 8.4 82 21-103 18-103 (108)
81 1e2b_A Enzyme IIB-cellobiose; 37.3 32 0.0011 26.1 3.8 67 23-90 17-85 (106)
82 3k1t_A Glutamate--cysteine lig 36.1 1.3E+02 0.0043 28.8 8.3 58 141-201 280-360 (432)
83 3gyb_A Transcriptional regulat 34.5 59 0.002 27.8 5.7 52 7-59 3-65 (280)
84 4a8t_A Putrescine carbamoyltra 31.6 1.3E+02 0.0046 27.8 7.8 72 8-86 62-146 (339)
85 2xko_C PIPX, global nitrogen r 31.1 13 0.00043 27.8 0.5 20 176-195 4-25 (89)
86 3l49_A ABC sugar (ribose) tran 31.0 88 0.003 26.7 6.2 41 8-48 4-46 (291)
87 3m9w_A D-xylose-binding peripl 28.3 82 0.0028 27.4 5.6 56 9-64 2-68 (313)
88 3l6u_A ABC-type sugar transpor 27.5 86 0.0029 26.8 5.5 43 6-48 5-49 (293)
89 4a8p_A Putrescine carbamoyltra 27.4 1.5E+02 0.0052 27.6 7.3 72 8-86 40-124 (355)
90 3uug_A Multiple sugar-binding 27.3 85 0.0029 27.5 5.5 40 8-47 2-43 (330)
91 3gd5_A Otcase, ornithine carba 27.0 1.2E+02 0.0041 27.9 6.5 71 8-85 47-130 (323)
92 3rht_A (gatase1)-like protein; 26.4 76 0.0026 28.2 4.9 62 26-87 19-88 (259)
93 3k1t_A Glutamate--cysteine lig 26.1 1.1E+02 0.0039 29.1 6.1 49 273-324 44-94 (432)
94 3n6x_A Putative glutathionylsp 25.1 57 0.0019 31.8 4.1 24 271-296 141-164 (474)
95 1duv_G Octase-1, ornithine tra 24.6 1.5E+02 0.005 27.4 6.6 71 8-85 43-126 (333)
96 3n5b_B ASR0485 protein; PII, P 24.2 19 0.00066 27.7 0.4 25 171-195 22-48 (112)
97 4ep1_A Otcase, ornithine carba 23.4 1.6E+02 0.0054 27.3 6.6 71 8-85 69-152 (340)
98 8abp_A L-arabinose-binding pro 23.3 1.1E+02 0.0039 26.2 5.6 38 9-46 2-41 (306)
99 3r7f_A Aspartate carbamoyltran 23.1 1.7E+02 0.0057 26.7 6.6 87 8-101 35-140 (304)
100 1vlv_A Otcase, ornithine carba 22.9 1.8E+02 0.0062 26.7 6.9 71 8-85 57-140 (325)
101 1dxh_A Ornithine carbamoyltran 22.8 1.6E+02 0.0056 27.1 6.6 71 8-85 44-127 (335)
102 3tpf_A Otcase, ornithine carba 22.5 1.8E+02 0.0063 26.4 6.8 71 8-85 35-118 (307)
103 2w37_A Ornithine carbamoyltran 22.1 1.8E+02 0.0062 27.1 6.8 71 8-85 66-149 (359)
104 1pvv_A Otcase, ornithine carba 21.0 1.8E+02 0.006 26.6 6.4 71 8-85 45-128 (315)
105 2i6u_A Otcase, ornithine carba 20.8 1.7E+02 0.0057 26.6 6.2 71 8-85 38-121 (307)
106 3s99_A Basic membrane lipoprot 20.1 1.5E+02 0.0052 27.2 5.9 77 6-84 23-114 (356)
No 1
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X
Probab=100.00 E-value=2.3e-60 Score=456.60 Aligned_cols=306 Identities=28% Similarity=0.515 Sum_probs=254.5
Q ss_pred CCccccCCceEEEEEeCCccccccchhHHHHHHHhCCCeEEEeCCCCCccccCCccEEEEccCc------------hhHH
Q 037279 1 MSTQSQCQRFRIGYALAPKKGQSLIQPSLLTKASERGIDLIPIDPIKPLVEQGPFDCIVHKLYG------------PDWT 68 (327)
Q Consensus 1 ~~~~~~~~~~~vG~~~~~~k~~~~~~~~l~~~~~~~gi~~~~ld~~~~l~~q~~~Dvilhk~~~------------~~~~ 68 (327)
|++.++ +++|||||++||.+++++++|+++++++|+++++||+++++..++++|++|||+++ ..+.
T Consensus 12 ~~~~~~--~~~vG~~l~~kk~~~~~~~~l~~al~~~G~~~~~iD~~~~~~~~~~~Dvvi~~l~~~~~ea~~~d~~~~~~~ 89 (346)
T 2q7d_A 12 MQTFLK--GKRVGYWLSEKKIKKLNFQAFAELCRKRGMEVVQLNLSRPIEEQGPLDVIIHKLTDVILEADQNDSQSLELV 89 (346)
T ss_dssp GGGGGT--TCEEEEECCHHHHHHHTHHHHHHHHHTTTCEEEECCTTSCSGGGCCCSEEEECCHHHHHHHHTTCHHHHHHH
T ss_pred hccccC--ceEEEEEECcccchhhhHHHHHHHHHhCCcEEEEcccccchhhcCCCCEEEeCCcccccccccCchhHHHHH
Confidence 555555 78999999999999999999999999999999999999999888999999999976 3678
Q ss_pred HHHHHHHHhCCCCcccCcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCc--cchhHHH-hccCCCcEEEee
Q 037279 69 RQLQQFSSQNPNVPIIDSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEM--KSLTSIE-DLKLTFPVIAKP 145 (327)
Q Consensus 69 ~~l~~~~~~~p~v~Vid~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~--~~~~~~~-~~~l~~P~VvKP 145 (327)
+.+++|..+++|++||||+++|++|.||+.|+++|.+.......+||++|+|+++++. +++.+.+ ..+++||+|+||
T Consensus 90 ~~l~~~~~~~~gv~vinp~~ai~~~~dk~~~~~~L~k~~~~~~~~gIp~P~t~~~~~~~~~~~~~~~~~~~lg~P~VvKP 169 (346)
T 2q7d_A 90 HRFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMEDDRICSPPFMELTSLCGDDTMRLLEKNGLTFPFICKT 169 (346)
T ss_dssp HHHHHHHHHCTTSEEESCHHHHHHTTBHHHHHHHHHHHHHHHCBTTEECCCEEEECSCCCTTHHHHHHHTTCCSSEEEEC
T ss_pred HHHHHHHHHCCCeEEcCCHHHHHHhhhHHHHHHHHHhhcccccCCCCCCCCEEEEeCCCHHHHHHHHHhcCCCCCEEEEe
Confidence 8899998889999999999999999999999999988533334469999999999873 4555544 467999999999
Q ss_pred ccCCCCccceeeEEEeChhhhccCCCceEEEeccCCCCeEEEEEEECCEEEEEEeccCCCchhhhhhhcCCcccccc--c
Q 037279 146 LVADGSVKSHQMYLIFDSQGLESMTAPFVLQEFVNHGGFIFKVYVAGMNVKCVKRKSLPDISEEKLKSLKGFLPFSR--I 223 (327)
Q Consensus 146 ~~~~Gs~~sh~m~lv~~~~~l~~l~~p~vvQefI~h~g~d~KV~ViG~~v~~~~R~S~~~~~~~~~~~~~g~~~f~~--~ 223 (327)
+.|+||. +|+|+++++.++|..++.|+|+||||+|+|+||||||||++++++.|+|+|+|..+. ...+++.|++ +
T Consensus 170 ~~g~Gs~-s~~v~~v~~~~~l~~~~~~~lvQefI~~~G~dirv~VvG~~v~~~~r~sl~~~~~~~--~~~~~~~f~s~~~ 246 (346)
T 2q7d_A 170 RVAHGTN-SHEMAIVFNQEGLNAIQPPCVVQNFINHNAVLYKVFVVGESYTVVQRPSLKNFSAGT--SDRESIFFNSHNV 246 (346)
T ss_dssp SBCSSTT-CCEEEEECSGGGTTC--CCEEEEECCCCTTEEEEEEEETTEEEEEEEECCCCCC------CCCCEEEEGGGT
T ss_pred cCCCcce-eeeeEEecCHHHHHhcCCCEEEEEeeCCCCeEEEEEEECCEEEEEEEecCCCcCcCc--cccccccccceee
Confidence 9999995 999999999999999999999999999999999999999999999999999987653 2356788875 2
Q ss_pred cccccCCcccccCCCCCCCCCcccc--ccCCCCcHHHHHHHHHHHHHHhCCcEeEEEEEEeCCCCCcEEEEEEcCCCCCC
Q 037279 224 SNLIDNDKKVHDDGKKNSQGDEVDL--ESVEMPSQSFLCELARGMREALGLNLFNFDVMRDARDSNRYLIIDVNYFPGYA 301 (327)
Q Consensus 224 s~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~lA~~~~~~lGl~l~G~Dvi~~~~~g~~~~VidVN~fPg~~ 301 (327)
++....+ . ..-++. ....++++++++++|.+++++||++++|||+|++.++|+ |||+|||+||||+
T Consensus 247 ~~~g~~~---~--------~~~~~~~~~~~~~~~~~el~~lA~~a~~alGl~~~gvDii~~~~~g~-~~VlEVN~~PG~~ 314 (346)
T 2q7d_A 247 SKPESSS---V--------LTELDKIEGVFERPSDEVIRELSRALRQALGVSLFGIDIIINNQTGQ-HAVIDINAFPGYE 314 (346)
T ss_dssp SSTTCCC---G--------GGCCSCCCSCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEECTTTCC-EEEEEEEESCCCT
T ss_pred ccCCccc---c--------ccccccccccccCCChHHHHHHHHHHHHHhCCceEeeEEEeecCCCC-EEEEEEeCCcccc
Confidence 2221110 0 000000 123456678999999999999999999999999864554 9999999999999
Q ss_pred CCCChHHHHHHHHHHHHhhccc
Q 037279 302 KMPGYESIMTDFFLQVLNKSAV 323 (327)
Q Consensus 302 g~~~~~~~l~~~~~~~~~~~~~ 323 (327)
|++++++++++++++.+++++.
T Consensus 315 g~~~~~~~i~~~l~~~~~~~~~ 336 (346)
T 2q7d_A 315 GVSEFFTDLLNHIATVLQGQST 336 (346)
T ss_dssp TCTTHHHHHHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHHHHhhccCC
Confidence 9999999999999999987765
No 2
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*
Probab=100.00 E-value=5.2e-38 Score=296.21 Aligned_cols=292 Identities=21% Similarity=0.337 Sum_probs=222.5
Q ss_pred CceEEEEEeCCccccccchhHHHHHHHhCCCeE--EEeCCCCCccccC-CccEEEEccCch--hHHHHHHHHHHhCCCCc
Q 037279 8 QRFRIGYALAPKKGQSLIQPSLLTKASERGIDL--IPIDPIKPLVEQG-PFDCIVHKLYGP--DWTRQLQQFSSQNPNVP 82 (327)
Q Consensus 8 ~~~~vG~~~~~~k~~~~~~~~l~~~~~~~gi~~--~~ld~~~~l~~q~-~~Dvilhk~~~~--~~~~~l~~~~~~~p~v~ 82 (327)
++.+||++.++++. ++ .++++++++|+++ +.+|++.++..++ ++|++++++.+. .+.+.++.+..++++++
T Consensus 10 ~~m~i~il~~~~~~-s~---~l~~al~~~G~~v~~~~~d~~~~~~~~~~~~d~v~~~~~~~~~~~~~~l~~~~~~~~g~~ 85 (324)
T 1z2n_X 10 QTVSLFIWLPESKQ-KT---LFISTKNHTQFELNNIIFDVTLSTELPDKEPNAIITKRTHPVGKMADEMRKYEKDHPKVL 85 (324)
T ss_dssp CEEEEEEECCHHHH-HH---HBSSCCSEEEEEETTEEEEEEEESSCCSSCCSEEEECCSCSSSHHHHHHHHHHHHCTTSE
T ss_pred CcEEEEEEEchhhh-hh---hHHHHHHhcCcEEEEEEecCCCCccccCCCceEEEEeccchHHHHHHHHHHHHHhCCCCe
Confidence 45689999987765 33 6778899999999 9999865665555 789999999764 45677777777778999
Q ss_pred ccCcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHH-hccCCCcEEEeeccCCCCccceeeEEEe
Q 037279 83 IIDSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIE-DLKLTFPVIAKPLVADGSVKSHQMYLIF 161 (327)
Q Consensus 83 Vid~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~-~~~l~~P~VvKP~~~~Gs~~sh~m~lv~ 161 (327)
++|+++++..+.||..+.++|.+ .|||+|+|+++.+.+++.+.. ..+++||+|+||..|+|+..+|++.++.
T Consensus 86 ~~~~~~~~~~~~dK~~~~~~l~~-------~gi~~P~~~~~~~~~~~~~~~~~~~~~~P~vvKP~~g~g~~~s~gv~~v~ 158 (324)
T 1z2n_X 86 FLESSAIHDMMSSREEINALLIK-------NNIPIPNSFSVKSKEEVIQLLQSKQLILPFIVKPENAQGTFNAHQMKIVL 158 (324)
T ss_dssp EETCHHHHHHHTBHHHHHHHHHH-------TTCCCSCEEEESSHHHHHHHHHTTCSCSSEEEEESBCSSSSGGGEEEEEC
T ss_pred EeCCHHHHHHHhCHHHHHHHHHH-------CCCCCCCEEEeCCHHHHHHHHHHcCCCCCEEEeeCCCCCCccceeeEEEe
Confidence 99999999999999999999998 699999999998877665544 2347799999999987776779999999
Q ss_pred ChhhhccCCCceEEEeccCCCCeEEEEEEECCEEEEEEeccCCCchhhhhhhcCCccccccc------------cccc--
Q 037279 162 DSQGLESMTAPFVLQEFVNHGGFIFKVYVAGMNVKCVKRKSLPDISEEKLKSLKGFLPFSRI------------SNLI-- 227 (327)
Q Consensus 162 ~~~~l~~l~~p~vvQefI~h~g~d~KV~ViG~~v~~~~R~S~~~~~~~~~~~~~g~~~f~~~------------s~~~-- 227 (327)
+.++|..+..++++||||++.|++++|+|+|++++++.|++++++..+... ....|+.. +++.
T Consensus 159 ~~~~l~~~~~~~lvqe~i~~~g~~~~v~v~g~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~~~p~~~~~k~~~~ 235 (324)
T 1z2n_X 159 EQEGIDDIHFPCLCQHYINHNNKIVKVFCIGNTLKWQTRTSLPNVHRCGIK---SVDFNNQHLEDILSWPEGVIDKQDII 235 (324)
T ss_dssp SGGGGTTCCSSEEEEECCCCTTCEEEEEEETTEEEEEEECCCCCCCCSSCC---EEEEETTBGGGGGGSCTTSSCHHHHH
T ss_pred CHHHHhhcCCCEEEEEccCCCCcEEEEEEECCEEEEEEecCcccccCCCcc---ceeeccccchhhhccccccccccccc
Confidence 999999888999999999998999999999999988888888765432110 01222221 1110
Q ss_pred --cCCcccccCCCCCCCCCccccccCCCCcHHHHHHHHHHHHHHhCCcEeEEEEEEeCCCCCcEEEEEEcCCCCCCCCCC
Q 037279 228 --DNDKKVHDDGKKNSQGDEVDLESVEMPSQSFLCELARGMREALGLNLFNFDVMRDARDSNRYLIIDVNYFPGYAKMPG 305 (327)
Q Consensus 228 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~~~lGl~l~G~Dvi~~~~~g~~~~VidVN~fPg~~g~~~ 305 (327)
+...+.+ +. ..+. ..+... ..++++++|.++.++||+.++|||++.+.++|+ +||+|||.+|||+++++
T Consensus 236 ~~~~~~~~~---~~-~~~~---~~~~~~-~~~~i~~~a~~~~~~lg~~~~~vD~~~~~~~g~-~~vlEvN~~Pg~~~~~~ 306 (324)
T 1z2n_X 236 ENSANRFGS---KI-LEDP---ILLNLT-SEAEMRDLAYKVRCALGVQLCGIDFIKENEQGN-PLVVDVNVFPSYGGKVD 306 (324)
T ss_dssp HHHTTTTCC---CB-CSCT---TTTTSC-CHHHHHHHHHHHHHHHTCSEEEEEEECGGGCSS-CEEEEEEESCCTTSCBC
T ss_pred cccccchhh---cc-ccCC---ccccCC-CHHHHHHHHHHHHHHhCCcEEeeEEEEEcCCCC-EEEEEEcCCCCcCCCCC
Confidence 0000000 00 0011 111111 236899999999999999999999999744564 89999999999999999
Q ss_pred hHHHHHHHHHHHHhhccc
Q 037279 306 YESIMTDFFLQVLNKSAV 323 (327)
Q Consensus 306 ~~~~l~~~~~~~~~~~~~ 323 (327)
+. .|++++.++++++.+
T Consensus 307 ~~-~i~~~l~~~~~~~~~ 323 (324)
T 1z2n_X 307 FD-WFVEKVALCYTEVAK 323 (324)
T ss_dssp HH-HHHHHHHHHHHC---
T ss_pred HH-HHHHHHHHHHHHhhc
Confidence 98 999999999877653
No 3
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A*
Probab=100.00 E-value=2.9e-34 Score=266.36 Aligned_cols=271 Identities=15% Similarity=0.142 Sum_probs=203.3
Q ss_pred ccCCceEEEEEeCCccccccchhHHHHHHHhCCCeEEEeCCC------CCccccCCccEEEEccCchhHHHHHHHHHHhC
Q 037279 5 SQCQRFRIGYALAPKKGQSLIQPSLLTKASERGIDLIPIDPI------KPLVEQGPFDCIVHKLYGPDWTRQLQQFSSQN 78 (327)
Q Consensus 5 ~~~~~~~vG~~~~~~k~~~~~~~~l~~~~~~~gi~~~~ld~~------~~l~~q~~~Dvilhk~~~~~~~~~l~~~~~~~ 78 (327)
+.+..++||+|...+|.++-..+.+++...+.| +|..+=+. .+.+.+.-.|++|...++..-.....+|.+..
T Consensus 3 ~~~~~~~~gvcam~~k~~s~pm~~il~rl~~~~-~f~~iif~d~~il~~~ve~wp~~d~lisf~s~gfpl~kai~y~~lr 81 (330)
T 3t7a_A 3 FTERQIVVGICSMAKKSKSKPMKEILERISLFK-YITVVVFEEEVILNEPVENWPLCDCLISFHSKGFPLDKAVAYAKLR 81 (330)
T ss_dssp ---CCEEEEEESCHHHHTSHHHHHHHHHHTTST-TEEEEECCHHHHHHSCGGGSCCCSEEEECCCTTCCHHHHHHHHHHH
T ss_pred CCCCceEEEEEecccccccHHHHHHHHHhcccC-cEEEEEeCCCceecCCcccCCcCCEEEEeccCCCcHHHHHHHHHHh
Confidence 456789999999999977777888888777776 44444333 46777777899999998765566777777664
Q ss_pred CCCcccCcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccc---------hhHHH---hccCCCcEEEeec
Q 037279 79 PNVPIIDSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKS---------LTSIE---DLKLTFPVIAKPL 146 (327)
Q Consensus 79 p~v~Vid~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~---------~~~~~---~~~l~~P~VvKP~ 146 (327)
+..+||++.++..++||..++++|++ .|||||+++++..... ..+.+ ...+++|+|+||+
T Consensus 82 -~p~~INd~~~q~~~~DK~~~~~iL~~-------~gIPtP~t~~~~rd~~~~~~~~~~e~~d~i~~~g~~l~kPfVeKPv 153 (330)
T 3t7a_A 82 -NPFVINDLNMQYLIQDRREVYSILQA-------EGILLPRYAILNRDPNNPKECNLIEGEDHVEVNGEVFQKPFVEKPV 153 (330)
T ss_dssp -CCEESBCSTHHHHHTBHHHHHHHHHH-------TTCCCCCEEEECCBTTBGGGSSEEECSSEEEETTEEEESSEEEEES
T ss_pred -CCceeCCHHHHHHHHHHHHHHHHHHH-------cCCCCCCEEEEeCCCCCccccceeccchhhhhccccccCCeeEccc
Confidence 68899999999999999999999999 6999999999986221 01111 3567899999999
Q ss_pred cCC------------CCccceeeEEEeChhhhc------cCCCceEEEeccCCCCeEEEEEEECCEEEE-EEeccCCCch
Q 037279 147 VAD------------GSVKSHQMYLIFDSQGLE------SMTAPFVLQEFVNHGGFIFKVYVAGMNVKC-VKRKSLPDIS 207 (327)
Q Consensus 147 ~~~------------Gs~~sh~m~lv~~~~~l~------~l~~p~vvQefI~h~g~d~KV~ViG~~v~~-~~R~S~~~~~ 207 (327)
.|+ |..|.+.+..+.|.++.- .-+..+++||||+++|+|+||||||+++++ +.|+|. . .
T Consensus 154 ~Gsdhni~iyyp~s~GgG~~RLfrki~n~sS~~~~~~~vr~~~~~i~QEFI~~~G~DIRv~vVG~~vv~Am~R~sp-~-~ 231 (330)
T 3t7a_A 154 SAEDHNVYIYYPTSAGGGSQRLFRKIGSRSSVYSPESNVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSP-A-L 231 (330)
T ss_dssp BTTCCCCEEECCGGGTCCEEEEEEEETTEEEEEESCCSCCSSSCEEEEECCCCSSEEEEEEEESTTCEEEEEEECT-T-S
T ss_pred ccccCcceeecccccCCchhhhhhhhCCcccccChhhhhccCCcEEEEeccCCCCceEEEEEECCEEEEEEEEeCC-C-C
Confidence 984 444677788888776531 224689999999999999999999999976 668773 1 1
Q ss_pred hhhhhhcCCccccccccccccCCcccccCCCCCCCCCccccccCCCCcHHHHHHHHHHHHHHhCCcEeEEEEEEeCCCCC
Q 037279 208 EEKLKSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVEMPSQSFLCELARGMREALGLNLFNFDVMRDARDSN 287 (327)
Q Consensus 208 ~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~~~lGl~l~G~Dvi~~~~~g~ 287 (327)
.++|+ +|.+. |+ ...+ ...+++.+++|.+++++||++++|||++++++
T Consensus 232 ~G~~r-----------~N~~g--------------G~--~~~~--v~Lt~eek~iA~kaa~a~G~~v~GVDlLrs~~--- 279 (330)
T 3t7a_A 232 DGKVE-----------RDSEG--------------KE--VRYP--VILNAREKLIAWKVCLAFKQTVCGFDLLRANG--- 279 (330)
T ss_dssp SCBCC-----------BCTTS--------------CB--CCEE--CCCCHHHHHHHHHHHHHTTBSEEEEEEEEETT---
T ss_pred CCcEE-----------EcCCC--------------Cc--eeee--ecCCHHHHHHHHHHHHHhCCceEEEEEEEECC---
Confidence 12222 23321 11 0122 33466789999999999999999999999853
Q ss_pred cEEEEEEcCCCCCCCCCChHHHHHHHHHHHH
Q 037279 288 RYLIIDVNYFPGYAKMPGYESIMTDFFLQVL 318 (327)
Q Consensus 288 ~~~VidVN~fPg~~g~~~~~~~l~~~~~~~~ 318 (327)
++||+|||.||-.|+..+|+...+..|.+.+
T Consensus 280 ~~~V~EVNg~~fvk~~~~yyd~~a~il~~~~ 310 (330)
T 3t7a_A 280 QSYVCDVNGFSFVKNSMKYYDDCAKILGNIV 310 (330)
T ss_dssp EEEEEEEEESCCCSSCHHHHHHHHHHHHHHH
T ss_pred ccEEEEeCCCccccCchhHHHHHHHHHHHHH
Confidence 3789999999999999988876666655543
No 4
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A*
Probab=99.98 E-value=3.2e-31 Score=249.93 Aligned_cols=242 Identities=17% Similarity=0.202 Sum_probs=174.4
Q ss_pred HHHhCCCeEEEeCCCCCcc-----ccC-------CccEEEEccCch------hHHHHHHHHHHhCCCCcccCcHHHHHHh
Q 037279 32 KASERGIDLIPIDPIKPLV-----EQG-------PFDCIVHKLYGP------DWTRQLQQFSSQNPNVPIIDSPDSIERL 93 (327)
Q Consensus 32 ~~~~~gi~~~~ld~~~~l~-----~q~-------~~Dvilhk~~~~------~~~~~l~~~~~~~p~v~Vid~~~ai~~~ 93 (327)
.++.+++++...+...+.. ..| .+|++|.|..+. .++..+..+ +..|++++|++++|.+|
T Consensus 34 ~a~~~~i~l~~~~~~~~~v~~~~~~~g~~~~r~~~~D~vi~R~~~~~~~~~~~~r~vl~~l--e~~GvpviN~~~sI~~~ 111 (309)
T 1i7n_A 34 QAEFSELNLVAHADGTYAVDMQVLRNGTKVVRSFRPDFVLIRQHAFGMAENEDFRHLVIGM--QYAGLPSINSLESIYNF 111 (309)
T ss_dssp EECGGGEEEEEETTSCEEEEEEECSSSSSEEEEECCSEEEECSCCCCSSTTCCCHHHHHHH--HHTTCCEESCHHHHHHT
T ss_pred HHhhcCceEEEEcCCCceEEeehhhcCCccceeccCCEEEEecccccccccchHHHHHHHH--HHCCccccCCHHHHHHh
Confidence 4556677877777765321 112 579999999653 234333333 33599999999999999
Q ss_pred cCH----HHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEEEeeccCCCCccceeeEEEeChhhhccC
Q 037279 94 HNR----ISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKPLVADGSVKSHQMYLIFDSQGLESM 169 (327)
Q Consensus 94 ~dR----~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~~~~~l~~l 169 (327)
.|| ..++++|.++.. .++|.|++....+..++ ...++||+|+||+.| | +++++.++.+++++..+
T Consensus 112 ~DK~~~~~~~~~~l~~~gi----~~~P~~~~~~~~~~~~~----~~~~g~PvVvK~~~G--s-~G~GV~lv~~~~~~~~~ 180 (309)
T 1i7n_A 112 CDKPWVFAQMVAIFKTLGG----EKFPLIEQTYYPNHREM----LTLPTFPVVVKIGHA--H-SGMGKVKVENHYDFQDI 180 (309)
T ss_dssp SSHHHHHHHHHHHHHHHCT----TTSCBCCCEEESSGGGG----SSCCCSSEEEEESSC--S-TTTTEEEECSHHHHHHH
T ss_pred CCccHHHHHHHHHHHhCCC----CCCCCCCEEeeCChhhh----hhccCCCEEEEeCCC--C-ceeCeEEECCHHHHHHH
Confidence 999 567777776311 13484444334443222 235799999999996 4 88999999999887533
Q ss_pred -------CCceEEEeccCCCCeEEEEEEECCEEEEEEeccCCCchhhhhhhcCCccccccccccccCCcccccCCCCCCC
Q 037279 170 -------TAPFVLQEFVNHGGFIFKVYVAGMNVKCVKRKSLPDISEEKLKSLKGFLPFSRISNLIDNDKKVHDDGKKNSQ 242 (327)
Q Consensus 170 -------~~p~vvQefI~h~g~d~KV~ViG~~v~~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~ 242 (327)
...+++||||+ .|+||||+|||+++.+++|+|..+ .|+ +|.+.
T Consensus 181 ~~~~~~~~~~~~vQefI~-~g~DiRv~VvGg~v~a~~Rr~~~g----~wr-----------tN~~~-------------- 230 (309)
T 1i7n_A 181 ASVVALTQTYATAEPFID-AKYDIRVQKIGNNYKAYMRTSISG----NWK-----------TNTGS-------------- 230 (309)
T ss_dssp HHHHHHHTCCEEEEECCC-EEEEEEEEEETTEEEEEEEESSCT----TTS-----------CSCCC--------------
T ss_pred HHHHhccCCeEEEEeecC-CCceEEEEEECCEEEEEEEEcCCC----CCe-----------ecCCc--------------
Confidence 46789999999 699999999999999888987422 232 13211
Q ss_pred CCccccccCCCCcHHHHHHHHHHHHHHh-CCcEeEEEEEEeCCCCCcEEEEEEcC--CCCCCCCCC-hHHHHHHHHHHHH
Q 037279 243 GDEVDLESVEMPSQSFLCELARGMREAL-GLNLFNFDVMRDARDSNRYLIIDVNY--FPGYAKMPG-YESIMTDFFLQVL 318 (327)
Q Consensus 243 ~~~~~~~~~~~~~~~~l~~lA~~~~~~l-Gl~l~G~Dvi~~~~~g~~~~VidVN~--fPg~~g~~~-~~~~l~~~~~~~~ 318 (327)
+ ....++++++.+++|.++++++ |++++|||++++.+ |+ ++|+|||. +|||+|.+. -...+++++.+.+
T Consensus 231 ~-----~~e~~~l~~e~~~la~~A~~a~gGldi~GVDll~~~~-g~-~~V~EVN~~~~P~~~~~~~~~~~~ia~~ii~~~ 303 (309)
T 1i7n_A 231 A-----MLEQIAMSDRYKLWVDACSEMFGGLDICAVKAVHGKD-GK-DYIFEVMDCSMPLIGEHQVEDRQLITDLVISKM 303 (309)
T ss_dssp S-----SEEEECCCHHHHHHHHHHTTGGGCCSEEEEEEEEETT-SC-EEEEEEECTTCCCCSSCHHHHHHHHHHHHHHHH
T ss_pred c-----eeeecCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCC-CC-EEEEEECCCCCCCccchhhhhHHHHHHHHHHHH
Confidence 1 1122345678999999999999 89999999999864 53 89999999 999998864 4567777887777
Q ss_pred hhccc
Q 037279 319 NKSAV 323 (327)
Q Consensus 319 ~~~~~ 323 (327)
++.++
T Consensus 304 ~~~~~ 308 (309)
T 1i7n_A 304 NQLLS 308 (309)
T ss_dssp HHHCC
T ss_pred HHHcC
Confidence 76654
No 5
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens}
Probab=99.97 E-value=1.2e-30 Score=248.94 Aligned_cols=234 Identities=16% Similarity=0.193 Sum_probs=169.9
Q ss_pred CeEEEeCCCCCccc-----cC--------CccEEEEccCch------hHHHHHHHHHHhCCCCcccCcHHHHHHhcCH--
Q 037279 38 IDLIPIDPIKPLVE-----QG--------PFDCIVHKLYGP------DWTRQLQQFSSQNPNVPIIDSPDSIERLHNR-- 96 (327)
Q Consensus 38 i~~~~ld~~~~l~~-----q~--------~~Dvilhk~~~~------~~~~~l~~~~~~~p~v~Vid~~~ai~~~~dR-- 96 (327)
+++..+++..+..+ .| .+|++|.|..+. .+...+. .+ +..|++|||++++|.+|.||
T Consensus 56 ~~~~~~~~~~~~v~~~~~~~g~~~~~r~~~~D~vi~R~~~~~~~~~~~yr~vl~-~l-e~~GvpviN~~~sI~~~~DK~~ 133 (344)
T 2p0a_A 56 LNLAAYVTGGCMVDMQVVRNGTKVVSRSFKPDFILVRQHAYSMALGEDYRSLVI-GL-QYGGLPAVNSLYSVYNFCSKPW 133 (344)
T ss_dssp EEEEEETTSCEEEEEC----------CEECCSEEEECSCSEEGGGTEECHHHHH-HH-HHTTCCEESCHHHHHHTTCHHH
T ss_pred eEEEEEcCcccEEEeecccCCccccccCCCCCEEEEeccccccccchhHHHHHH-HH-HHCCceecCCHHHHHhhCCchH
Confidence 88888887764221 11 579999999653 2343333 32 33599999999999999999
Q ss_pred --HHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEEEeeccCCCCccceeeEEEeChhhhccC-----
Q 037279 97 --ISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKPLVADGSVKSHQMYLIFDSQGLESM----- 169 (327)
Q Consensus 97 --~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~~~~~l~~l----- 169 (327)
..++++|.++.. .++|.|++....+..++ ...++||+|+||+.| | ++++|.++.+.+++..+
T Consensus 134 v~~~~l~~l~~~gi----~~~P~~~~t~~~~~~~~----~~~~g~PvVvK~~~G--s-~G~GV~lve~~~~~~~~~~~~~ 202 (344)
T 2p0a_A 134 VFSQLIKIFHSLGP----EKFPLVEQTFFPNHKPM----VTAPHFPVVVKLGHA--H-AGMGKIKVENQLDFQDITSVVA 202 (344)
T ss_dssp HHHHHHHHHHHHCT----TTSCBCCCEEESSSTTC----CCCSSSSEEEEESSC--C-TTTTEEEECSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCC----CCCCCCCEEecCchhhh----hhccCCCEEEEeCCC--C-ceeCeEEECCHHHHHHHHHHHh
Confidence 667777777311 13484444334443322 235799999999996 4 88999999999888632
Q ss_pred --CCceEEEeccCCCCeEEEEEEECCEEEEEEeccCC-CchhhhhhhcCCccccccccccccCCcccccCCCCCCCCCcc
Q 037279 170 --TAPFVLQEFVNHGGFIFKVYVAGMNVKCVKRKSLP-DISEEKLKSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEV 246 (327)
Q Consensus 170 --~~p~vvQefI~h~g~d~KV~ViG~~v~~~~R~S~~-~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~ 246 (327)
...+++||||+ .|+||||+|||+++++++|++.. +|.+ |.+.
T Consensus 203 ~~~~~~~vQefI~-~g~DiRv~VVGg~vva~~R~~~~g~wrt----------------N~~~------------------ 247 (344)
T 2p0a_A 203 MAKTYATTEAFID-SKYDIRIQKIGSNYKAYMRTSISGNWKA----------------NTGS------------------ 247 (344)
T ss_dssp HHTCCEEEEECCC-EEEEEEEEEETTEEEEEEEEESSSCSST----------------TSSS------------------
T ss_pred ccCCeEEEEeccC-CCccEEEEEECCEEEEEEEecCCCCCee----------------cCCc------------------
Confidence 46789999999 69999999999999988888743 3422 2210
Q ss_pred ccccCCCCcHHHHHHHHHHHHHHh-CCcEeEEEEEEeCCCCCcEEEEEEcC--CCCCCCCCC-hHHHHHHHHHHHHhhcc
Q 037279 247 DLESVEMPSQSFLCELARGMREAL-GLNLFNFDVMRDARDSNRYLIIDVNY--FPGYAKMPG-YESIMTDFFLQVLNKSA 322 (327)
Q Consensus 247 ~~~~~~~~~~~~l~~lA~~~~~~l-Gl~l~G~Dvi~~~~~g~~~~VidVN~--fPg~~g~~~-~~~~l~~~~~~~~~~~~ 322 (327)
.....++++++.+++|.++++++ |++++|||++++.+ |+ ++|+|||. .|+|+|.+. -...+++++.+.++++.
T Consensus 248 -~~~e~~~l~~e~~~la~~Aa~a~gGldi~GVDll~~~~-G~-~~VlEVN~~~~P~~~~~~~~~~~~Ia~~ii~~i~~~~ 324 (344)
T 2p0a_A 248 -AMLEQVAMTERYRLWVDSCSEMFGGLDICAVKAVHSKD-GR-DYIIEVMDSSMPLIGEHVEEDRQLMADLVVSKMSQLP 324 (344)
T ss_dssp -EEEEEECCCHHHHHHHHHHTTGGGCCSEEEEEEEEETT-SC-EEEEEEECTTCCCCGGGHHHHHHHHHHHHHHHHHTCC
T ss_pred -eEEEeeCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCC-CC-EEEEEEcCCCCCcccchhhhHHHHHHHHHHHHHHHhc
Confidence 01123445678999999999999 89999999999864 53 89999999 999998874 34566677777666554
No 6
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=99.97 E-value=7.7e-30 Score=247.90 Aligned_cols=238 Identities=14% Similarity=0.197 Sum_probs=171.7
Q ss_pred HHhCCCeEEEeCCCCCccc-----cC-------CccEEEEccCch------hHHHHHHHHHHhCCCCcccCcHHHHHHhc
Q 037279 33 ASERGIDLIPIDPIKPLVE-----QG-------PFDCIVHKLYGP------DWTRQLQQFSSQNPNVPIIDSPDSIERLH 94 (327)
Q Consensus 33 ~~~~gi~~~~ld~~~~l~~-----q~-------~~Dvilhk~~~~------~~~~~l~~~~~~~p~v~Vid~~~ai~~~~ 94 (327)
++.++|++..++...+..+ .| .+|++|.|.... .++..+..+ + ..|++|||++++|.+|.
T Consensus 147 a~~~~i~l~~~~~~~~~v~~~~~~~g~~~~r~~~~DaviiR~~~~~~~~~~~yr~vlr~l-E-~~GvpviNs~~sI~~~~ 224 (422)
T 1pk8_A 147 AEFSDLNLVAHANGGFSVDMEVLRNGVKVVRSLKPDFVLIRQHAFSMARNGDYRSLVIGL-Q-YAGIPSVNSLHSVYNFC 224 (422)
T ss_dssp ECGGGEEEEEETTSCEEEEEEEEETTEEEEEEECCSEEEECSCSBCSSTTCBCHHHHHHH-H-HTTCCEESCHHHHHHTS
T ss_pred HhhcCceEEEEcCCceeEEeehhhcCCccccccCCCEEEEeccccccccchhHHHHHHHH-H-HCCccccCCHHHHHHhC
Confidence 4445677777666553211 12 579999999653 234333333 3 35999999999999999
Q ss_pred CH----HHHHHHHHhcccccCCCCcC-CCeEEEEcCccchhHHHhccCCCcEEEeeccCCCCccceeeEEEeChhhhccC
Q 037279 95 NR----ISMLEVVTQLKLHFDNEKFG-VPNQVVVSEMKSLTSIEDLKLTFPVIAKPLVADGSVKSHQMYLIFDSQGLESM 169 (327)
Q Consensus 95 dR----~~~~~~L~~~~~~~~~~~i~-~P~~~~~~~~~~~~~~~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~~~~~l~~l 169 (327)
|| ..++++|.++.. .++| +|.+. ..+..++ ...++||+|+||+.| | ++++|.++.++++++.+
T Consensus 225 DK~~vf~~~l~ll~~~gi----~~iP~t~~t~-~~~~~~~----i~~~g~PvVvKp~~G--S-~G~GV~lve~~~~l~~i 292 (422)
T 1pk8_A 225 DKPWVFAQMVRLHKKLGT----EEFPLIDQTF-YPNHKEM----LSSTTYPVVVKMGHA--H-SGMGKVKVDNQHDFQDI 292 (422)
T ss_dssp SHHHHHHHHHHHHHHHCT----TTSCBCCCEE-ESSGGGC----CCCSSSSEEEEESSC--C-TTTTEEEECSHHHHHHH
T ss_pred CccHHHHHHHHHHHhCCC----CCCCCCceEe-cCchhhh----hhccCCCEEEEeCCC--C-ceeCeEEeCCHHHHHHH
Confidence 99 567777776311 1348 55554 4432222 235789999999996 4 88999999999888633
Q ss_pred -------CCceEEEeccCCCCeEEEEEEECCEEEEEEeccCC-CchhhhhhhcCCccccccccccccCCcccccCCCCCC
Q 037279 170 -------TAPFVLQEFVNHGGFIFKVYVAGMNVKCVKRKSLP-DISEEKLKSLKGFLPFSRISNLIDNDKKVHDDGKKNS 241 (327)
Q Consensus 170 -------~~p~vvQefI~h~g~d~KV~ViG~~v~~~~R~S~~-~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~ 241 (327)
...+|+||||+ .|+||||+|||+++++++|++.. +|.+ |.+.
T Consensus 293 i~~~~~~~~~~~vQEfI~-~g~DIRv~VVGg~vva~~Rr~~~g~Wrt----------------Nvg~------------- 342 (422)
T 1pk8_A 293 ASVVALTKTYATAEPFID-AKYDVRVQKIGQNYKAYMRTSVSGNWKT----------------NTGS------------- 342 (422)
T ss_dssp HHHHHHHTSCEEEEECCC-EEEEEEEEEETTEEEEEEEEESSSCSST----------------TSSC-------------
T ss_pred HHHHhccCceEEEEeecC-CCceEEEEEECCEEEEEEEEcCCCCcee----------------ccCc-------------
Confidence 46789999999 68999999999999988888743 3422 3210
Q ss_pred CCCccccccCCCCcHHHHHHHHHHHHHHh-CCcEeEEEEEEeCCCCCcEEEEEEcC--CCCCCCCCC-hHHHHHHHHHHH
Q 037279 242 QGDEVDLESVEMPSQSFLCELARGMREAL-GLNLFNFDVMRDARDSNRYLIIDVNY--FPGYAKMPG-YESIMTDFFLQV 317 (327)
Q Consensus 242 ~~~~~~~~~~~~~~~~~l~~lA~~~~~~l-Gl~l~G~Dvi~~~~~g~~~~VidVN~--fPg~~g~~~-~~~~l~~~~~~~ 317 (327)
+ ....++++++++++|.++++++ |++++|||++++.+ |. +||+|||. .|+++|.+. -...+++++.+.
T Consensus 343 -g-----~~e~i~lt~e~~elA~kAaka~gGldiaGVDlL~s~d-G~-~~VlEVN~s~~P~~~g~~~~~~~~IA~~ii~~ 414 (422)
T 1pk8_A 343 -A-----MLEQIAMSDRYKLWVDTCSEIFGGLDICAVEALHGKD-GR-DHIIEVVGSSMPLIGDHQDEDKQLIVELVVNK 414 (422)
T ss_dssp -E-----EEEEECCCHHHHHHHHHHTTGGGCCSEEEEEEEEETT-SC-EEEEEEECTTCCCCTTCHHHHHHHHHHHHHHH
T ss_pred -e-----eeeeeCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcCC-CC-EEEEEECCCCCCCccchhhhHHHHHHHHHHHH
Confidence 0 1123345678999999999999 89999999999864 53 89999999 999998874 456778888888
Q ss_pred Hhhcc
Q 037279 318 LNKSA 322 (327)
Q Consensus 318 ~~~~~ 322 (327)
+++++
T Consensus 415 i~~~~ 419 (422)
T 1pk8_A 415 MTQAL 419 (422)
T ss_dssp HHCC-
T ss_pred HHHhc
Confidence 77765
No 7
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=99.94 E-value=1.6e-25 Score=205.27 Aligned_cols=241 Identities=14% Similarity=0.226 Sum_probs=170.5
Q ss_pred chhHHHHHHHhCCCeEEEeCCCCCccc-------cCCccEEEEccCchhHHHHHHHHHHhCCCCcccCcHHHHHHhcCHH
Q 037279 25 IQPSLLTKASERGIDLIPIDPIKPLVE-------QGPFDCIVHKLYGPDWTRQLQQFSSQNPNVPIIDSPDSIERLHNRI 97 (327)
Q Consensus 25 ~~~~l~~~~~~~gi~~~~ld~~~~l~~-------q~~~Dvilhk~~~~~~~~~l~~~~~~~p~v~Vid~~~ai~~~~dR~ 97 (327)
....++++++++|++++.+|....... ...+|+++.+.........+.++++. .|++++|+++++..+.||+
T Consensus 12 ~~~~~~~a~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~~~~~~~~~dK~ 90 (280)
T 1uc8_A 12 DERMLFERAEALGLPYKKVYVPALPMVLGERPKELEGVTVALERCVSQSRGLAAARYLTA-LGIPVVNRPEVIEACGDKW 90 (280)
T ss_dssp HHHHHHHHHHHHTCCEEEEEGGGCCEETTBCCGGGTTCCEEEECCSSHHHHHHHHHHHHH-TTCCEESCHHHHHHHHBHH
T ss_pred HHHHHHHHHHHcCCcEEEEehhhceeeccCCCcccCCCCEEEECCccchhhHHHHHHHHH-CCCceeCCHHHHHHhCCHH
Confidence 345688999999999999997643211 23679555554332223344455544 4899999999999999999
Q ss_pred HHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEEEeeccCCCCccceeeEEEeChhhhcc-------C-
Q 037279 98 SMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKPLVADGSVKSHQMYLIFDSQGLES-------M- 169 (327)
Q Consensus 98 ~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~~~~~l~~-------l- 169 (327)
.+.++|.+ .|||+|++..+.+.+++.+. ...++||+|+||..|+| |+++.++.+.+++.. +
T Consensus 91 ~~~~~l~~-------~gi~~p~~~~~~~~~~~~~~-~~~~~~p~vvKp~~g~~---~~gv~~v~~~~el~~~~~~~~~~~ 159 (280)
T 1uc8_A 91 ATSVALAK-------AGLPQPKTALATDREEALRL-MEAFGYPVVLKPVIGSW---GRLLAXXXXXXXXXXXXXXKEVLG 159 (280)
T ss_dssp HHHHHHHH-------TTCCCCCEEEESSHHHHHHH-HHHHCSSEEEECSBCCB---CSHHHHHHHHHC------------
T ss_pred HHHHHHHH-------cCcCCCCeEeeCCHHHHHHH-HHHhCCCEEEEECCCCC---cccceecccccccchhhhhHhhhc
Confidence 99999998 69999999999987766543 34578999999999753 578888888877643 1
Q ss_pred ---CCceEEEeccCCCCeEEEEEEECCEEEEE-EeccCCCchhhhhhhcCCccccccccccccCCcccccCCCCCCCCCc
Q 037279 170 ---TAPFVLQEFVNHGGFIFKVYVAGMNVKCV-KRKSLPDISEEKLKSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDE 245 (327)
Q Consensus 170 ---~~p~vvQefI~h~g~d~KV~ViG~~v~~~-~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~ 245 (327)
..++++||||+..+++++++++|+++++. .|.+ .+|.. +...+ |.
T Consensus 160 ~~~~~~~lvqe~i~~~~~e~~v~v~~~~~~~~~~~~~-~~~~~----------------~~~~g-------------~~- 208 (280)
T 1uc8_A 160 GFQHQLFYIQEYVEKPGRDIRVFVVGERAIAAIYRRS-AHWIT----------------NTARG-------------GQ- 208 (280)
T ss_dssp CTTTTCEEEEECCCCSSCCEEEEEETTEEEEEEEC---------------------------------------------
T ss_pred ccCCCcEEEEeccCCCCceEEEEEECCEEEEEEEEec-CCccc----------------cccCC-------------cc-
Confidence 46899999999778999999999998764 4432 22211 11110 10
Q ss_pred cccccCCCCcHHHHHHHHHHHHHHhCCcEeEEEEEEeCCCCCcEEEEEEcCCCCCCCCC-----ChHHHHHHHHH
Q 037279 246 VDLESVEMPSQSFLCELARGMREALGLNLFNFDVMRDARDSNRYLIIDVNYFPGYAKMP-----GYESIMTDFFL 315 (327)
Q Consensus 246 ~~~~~~~~~~~~~l~~lA~~~~~~lGl~l~G~Dvi~~~~~g~~~~VidVN~fPg~~g~~-----~~~~~l~~~~~ 315 (327)
..+.. ..++++++|.++.++||+.++|+|++.+.+ | ++++|||..||+..+. ++.+.+++++.
T Consensus 209 --~~p~~--l~~~~~~~~~~~~~~lg~g~~~vD~~~~~~-g--~~~iEiN~r~g~~~~~~~~G~~~~~~~~~~~~ 276 (280)
T 1uc8_A 209 --AENCP--LTEEVARLSVKAAEAVGGGVVAVDLFESER-G--LLVNEVNHTMEFKNSVHTTGVDIPGEILKYAW 276 (280)
T ss_dssp --CEECC--CCHHHHHHHHHHHHHTTCSEEEEEEEEETT-E--EEEEEEETTCCCTTHHHHHCCCHHHHHHHHHH
T ss_pred --ccCCC--CCHHHHHHHHHHHHHhCCCeEEEEEEEeCC-C--eEEEEEeCCCCccchheeeccCHHHHHHHHHH
Confidence 01122 235899999999999999999999999853 3 8999999999998754 34455555443
No 8
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=99.94 E-value=6.9e-25 Score=206.62 Aligned_cols=266 Identities=17% Similarity=0.152 Sum_probs=176.8
Q ss_pred CCccccCCceEEEEEeCCc-ccccc---chhHHHHHHHhCCCeEEEeCCCCCcc---ccCCccEEEEccCchhH-HHHHH
Q 037279 1 MSTQSQCQRFRIGYALAPK-KGQSL---IQPSLLTKASERGIDLIPIDPIKPLV---EQGPFDCIVHKLYGPDW-TRQLQ 72 (327)
Q Consensus 1 ~~~~~~~~~~~vG~~~~~~-k~~~~---~~~~l~~~~~~~gi~~~~ld~~~~l~---~q~~~Dvilhk~~~~~~-~~~l~ 72 (327)
|++.....+.+|++++--. .+... .-..+++++++.|++++.+|...... ....+|+++..+..... ...++
T Consensus 5 ~~~~~~~~~~~v~vl~gg~s~E~~vsl~s~~~v~~al~~~g~~v~~i~~~~~~~~~l~~~~~D~v~~~~hg~~ge~~~~~ 84 (317)
T 4eg0_A 5 MSGIDPKRFGKVAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAERPLSALKDEGFVRAFNALHGGYGENGQIQ 84 (317)
T ss_dssp ---CCGGGGCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCTTHHHHTTCCEEEECCCSGGGTSSHHH
T ss_pred cCccchhhcceEEEEECCCCCcceeeHHHHHHHHHHHHHCCCEEEEEeCCCchHHHhhhcCCCEEEEcCCCCCCchHHHH
Confidence 5544434467888888643 22222 23457889999999999999665422 12478999988764311 12234
Q ss_pred HHHHhCCCCccc-CcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHH---hccCCCcEEEeeccC
Q 037279 73 QFSSQNPNVPII-DSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIE---DLKLTFPVIAKPLVA 148 (327)
Q Consensus 73 ~~~~~~p~v~Vi-d~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~---~~~l~~P~VvKP~~~ 148 (327)
..+.. .|++++ ++++++..++||..+.++|.+ .|||+|++.++.+.+++.+.. ...++||+|+||..+
T Consensus 85 ~~le~-~gip~~g~~~~~~~~~~dK~~~k~~l~~-------~Gip~p~~~~~~~~~~~~~~~~~~~~~~g~PvvvKP~~~ 156 (317)
T 4eg0_A 85 GALDF-YGIRYTGSGVLGSALGLDKFRTKLVWQQ-------TGVPTPPFETVMRGDDYAARATDIVAKLGLPLFVKPASE 156 (317)
T ss_dssp HHHHH-HTCEESSCCHHHHHHHHCHHHHHHHHHH-------TTCCCCCEEEEETTSCHHHHHHHHHHHHCSCEEEEECC-
T ss_pred HHHHH-cCCCeeCcCHHHHHHHhCHHHHHHHHHH-------CCcCCCCEEEEECchhHHHHHHHHHHhcCCCEEEEeCCC
Confidence 44333 379988 678999999999999999998 699999999999877654432 257899999999997
Q ss_pred CCCccceeeEEEeChhhhcc-------CCCceEEEeccCCCCeEEEEEEECCEEEEEEeccCCCchhhhhhhcCCccccc
Q 037279 149 DGSVKSHQMYLIFDSQGLES-------MTAPFVLQEFVNHGGFIFKVYVAGMNVKCVKRKSLPDISEEKLKSLKGFLPFS 221 (327)
Q Consensus 149 ~Gs~~sh~m~lv~~~~~l~~-------l~~p~vvQefI~h~g~d~KV~ViG~~v~~~~R~S~~~~~~~~~~~~~g~~~f~ 221 (327)
+ +|.++.++.+.++|.. ...++++||||++ |+++.|.|+|+++..+...... .+++.|.
T Consensus 157 ~---~s~Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~i~~-G~E~~v~vl~~~~~~~~~i~~~----------~~~~~~~ 222 (317)
T 4eg0_A 157 G---SSVAVLKVKTADALPAALSEAATHDKIVIVEKSIEG-GGEYTACIAGDLDLPLIKIVPA----------GEFYDYH 222 (317)
T ss_dssp -------CCEEECSGGGHHHHHHHHTTTCSEEEEEECCCS-SEEEEEEEETTCCCCCEEEEC------------------
T ss_pred C---CCCCEEEECCHHHHHHHHHHHHhCCCeEEEEcCCCC-CcEEEEEEECCcccceEEEeeC----------Cceechh
Confidence 5 4588999999988752 3568999999975 8999999999976432211111 0122332
Q ss_pred cccccccCCcccccCCCCCCCCCccccccCCCC--cHHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCcEEEEEEcCCC
Q 037279 222 RISNLIDNDKKVHDDGKKNSQGDEVDLESVEMP--SQSFLCELARGMREALGLN-LFNFDVMRDARDSNRYLIIDVNYFP 298 (327)
Q Consensus 222 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~VidVN~fP 298 (327)
. ++..+. . ....+..++ ..++++++|.++.++||+. ++++|++.+. +| ++||+|||..|
T Consensus 223 ~--k~~~g~---~-----------~~~~P~~l~~~~~~~l~~~a~~~~~~lg~~G~~~vD~~~~~-~g-~~~vlEiN~~p 284 (317)
T 4eg0_A 223 A--KYVAND---T-----------QYLIPCGLPAEQETELKRIARRAFDVLGCTDWGRADFMLDA-AG-NAYFLEVNTAP 284 (317)
T ss_dssp ------------C-----------EEESSCSSCHHHHHHHHHHHHHHHHTTTCCSEEEEEEEECT-TC-CEEEEEEESSC
T ss_pred h--cccCCC---e-----------eEEcCCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeC-CC-CEEEEEeeCCC
Confidence 1 221110 0 011122222 2457899999999999997 9999999985 35 49999999999
Q ss_pred CCCCCCCh
Q 037279 299 GYAKMPGY 306 (327)
Q Consensus 299 g~~g~~~~ 306 (327)
|+....-+
T Consensus 285 g~t~~s~~ 292 (317)
T 4eg0_A 285 GMTDHSLP 292 (317)
T ss_dssp CCSTTSHH
T ss_pred CCCcccHH
Confidence 99876543
No 9
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=99.93 E-value=1.6e-24 Score=202.45 Aligned_cols=267 Identities=17% Similarity=0.243 Sum_probs=181.6
Q ss_pred ceEEEEEeCC-cc---ccccchhHHHHHHHhCCCeEEEeCCCCC---ccccCCccEEEEccCchhHH-HHHHHHHHhCCC
Q 037279 9 RFRIGYALAP-KK---GQSLIQPSLLTKASERGIDLIPIDPIKP---LVEQGPFDCIVHKLYGPDWT-RQLQQFSSQNPN 80 (327)
Q Consensus 9 ~~~vG~~~~~-~k---~~~~~~~~l~~~~~~~gi~~~~ld~~~~---l~~q~~~Dvilhk~~~~~~~-~~l~~~~~~~p~ 80 (327)
.-+|++++-- +. .....-..++++++++|++++.+|+... +.....+|+++..+...... ..++.+++. .|
T Consensus 3 ~m~v~vl~gg~s~e~~vs~~s~~~v~~al~~~g~~v~~i~~~~~~~~~~~~~~~D~v~~~~~~~~ge~~~~~~~le~-~g 81 (307)
T 3r5x_A 3 AMRIGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHGKYGEDGTVQGTLES-LG 81 (307)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHHHHHHSCTTTEEEEEEECSSGGGHHHHTTTCSEEEECCCSHHHHSSHHHHHHHH-HT
T ss_pred CcEEEEEeCCCCcchHhHHHHHHHHHHHHHHCCCEEEEEcccCchhHHHhccCCCEEEEeCCCCCCcHHHHHHHHHH-cC
Confidence 3467777733 11 1112233577888999999999999843 33334789999988654211 122333333 47
Q ss_pred CcccCc-HHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEEEeeccCCCCccceeeEE
Q 037279 81 VPIIDS-PDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKPLVADGSVKSHQMYL 159 (327)
Q Consensus 81 v~Vid~-~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~VvKP~~~~Gs~~sh~m~l 159 (327)
+++++| ++++..++||..+.++|.+ .|||+|++.++.+.+++.......++||+|+||..|+ +|+++.+
T Consensus 82 i~~~g~~~~~~~~~~dK~~~~~~l~~-------~Gip~p~~~~~~~~~~~~~~~~~~~~~P~vvKP~~~~---~s~Gv~~ 151 (307)
T 3r5x_A 82 IPYSGSNMLSSGICMDKNISKKILRY-------EGIETPDWIELTKMEDLNFDELDKLGFPLVVKPNSGG---SSVGVKI 151 (307)
T ss_dssp CCBSSSCHHHHHHHHCHHHHHHHHHH-------TTCCCCCEEEEESSSCCCHHHHHHHCSSEEEEECC-------CCCEE
T ss_pred CCeeCcCHHHHHHHcCHHHHHHHHHH-------CCCCCCCEEEEeChhhhhHHHHHhcCCCEEEEeCCCC---CCCCEEE
Confidence 999865 9999999999999999998 6999999999998766543234567999999999875 4589999
Q ss_pred EeChhhhccC-------CCceEEEeccCCCCeEEEEEEECCEEEEE-EeccCCCchhhhhhhcCCccccccccccccCCc
Q 037279 160 IFDSQGLESM-------TAPFVLQEFVNHGGFIFKVYVAGMNVKCV-KRKSLPDISEEKLKSLKGFLPFSRISNLIDNDK 231 (327)
Q Consensus 160 v~~~~~l~~l-------~~p~vvQefI~h~g~d~KV~ViG~~v~~~-~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~ 231 (327)
+.+.++|... ..++++||||+ |++++|.|+|+++..+ .+.... +++.|. +++...
T Consensus 152 v~~~~el~~~~~~~~~~~~~~lvee~i~--G~e~~v~v~~g~~~~~~~~~~~~-----------~~~~~~--~~~~~~-- 214 (307)
T 3r5x_A 152 VYDKDELISMLETVFEWDSEVVIEKYIK--GEEITCSIFDGKQLPIISIRHAA-----------EFFDYN--AKYDDA-- 214 (307)
T ss_dssp ECSHHHHHHHHHHHHHHCSEEEEEECCC--SEEEEEEEETTEECCCEEEEEEE-----------EEETTE--EEEEEE--
T ss_pred eCCHHHHHHHHHHHHhcCCCEEEECCcC--CEEEEEEEECCEEeeEEEEEcCC-----------cccChh--hcCCCC--
Confidence 9999887633 57899999996 7999999999988432 211100 111221 122100
Q ss_pred ccccCCCCCCCCCccccccCCCCc--HHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCcEEEEEEcCCCCCCCCC----
Q 037279 232 KVHDDGKKNSQGDEVDLESVEMPS--QSFLCELARGMREALGLN-LFNFDVMRDARDSNRYLIIDVNYFPGYAKMP---- 304 (327)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~VidVN~fPg~~g~~---- 304 (327)
|. ...+...+. .++++++|.++.++||+. ++++|++.++ | +++|+|||..||+.+..
T Consensus 215 -----------g~--~~~p~~l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~~~--g-~~~vlEiN~rpg~~~~s~~~~ 278 (307)
T 3r5x_A 215 -----------ST--IEEVIELPAELKERVNKASLACYKALKCSVYARVDMMVKD--G-IPYVMEVNTLPGMTQASLLPK 278 (307)
T ss_dssp -----------EE--EEEECCCCHHHHHHHHHHHHHHHHHTTCCSEEEEEEEEET--T-EEEEEEEESSCCCSTTSHHHH
T ss_pred -----------CC--eEecCCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEC--C-eEEEEEEcCCCCCCccCHHHH
Confidence 00 001222222 347899999999999999 9999999983 4 49999999999998653
Q ss_pred -------ChHHHHHHHHHHHHh
Q 037279 305 -------GYESIMTDFFLQVLN 319 (327)
Q Consensus 305 -------~~~~~l~~~~~~~~~ 319 (327)
++.+++.+.+...++
T Consensus 279 ~~~~~G~~~~~li~~ll~~a~~ 300 (307)
T 3r5x_A 279 SADAAGIHYSKLLDMIIETSLR 300 (307)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHH
Confidence 345555555555443
No 10
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=99.92 E-value=1.7e-23 Score=194.51 Aligned_cols=252 Identities=19% Similarity=0.242 Sum_probs=173.5
Q ss_pred eEEEEEeCCcc-cccc---chhHHHHHHHhCCCeEEEeCCCCCccc---cCCccEEEEccCchhH-HHHHHHHHHhCCCC
Q 037279 10 FRIGYALAPKK-GQSL---IQPSLLTKASERGIDLIPIDPIKPLVE---QGPFDCIVHKLYGPDW-TRQLQQFSSQNPNV 81 (327)
Q Consensus 10 ~~vG~~~~~~k-~~~~---~~~~l~~~~~~~gi~~~~ld~~~~l~~---q~~~Dvilhk~~~~~~-~~~l~~~~~~~p~v 81 (327)
.+||++..... +... ....++++++++|++++.+|.+..... ...+|+++.++..... ...++..+.. .|+
T Consensus 3 ~~i~il~gg~s~e~~~s~~~~~~l~~al~~~G~~v~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~e~~~~~~~~e~-~g~ 81 (306)
T 1iow_A 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHGRGGEDGTLQGMLEL-MGL 81 (306)
T ss_dssp CEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCGGGTTTTTEEEEEECCCSTTTSSSHHHHHHHH-HTC
T ss_pred cEEEEEeCCCCccceEcHHhHHHHHHHHHHCCCeEEEEecCchHHHHhhccCCCEEEEcCCCCCCcchHHHHHHHH-cCC
Confidence 46777776432 2222 234688999999999999998843222 1368999988742100 0112233222 378
Q ss_pred ccc-CcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHH-------HhccCCCcEEEeeccCCCCcc
Q 037279 82 PII-DSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSI-------EDLKLTFPVIAKPLVADGSVK 153 (327)
Q Consensus 82 ~Vi-d~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~-------~~~~l~~P~VvKP~~~~Gs~~ 153 (327)
+++ ++++++..+.||+.+.++|.+ .|||+|++..+.+. ++.+. ....++||+|+||..|+ +
T Consensus 82 ~~~g~~~~~~~~~~dK~~~~~~l~~-------~gi~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~vvKP~~g~---~ 150 (306)
T 1iow_A 82 PYTGSGVMASALSMDKLRSKLLWQG-------AGLPVAPWVALTRA-EFEKGLSDKQLAEISALGLPVIVKPSREG---S 150 (306)
T ss_dssp CBSSCCHHHHHHHHCHHHHHHHHHH-------TTCCBCCEEEEEHH-HHHHCCCTHHHHHHHTTCSSEEEEETTCC---T
T ss_pred CccCCCHHHHHHHcCHHHHHHHHHH-------CCCCCCCeEEEchh-hhhccchhhhhhHHhccCCCEEEEeCCCC---C
Confidence 876 789999999999999999998 69999999999876 44330 23568999999999975 4
Q ss_pred ceeeEEEeChhhhcc-------CCCceEEEeccCCCCeEEEEEEECCEEEEEEeccCCCchhhhhhhcCCcccccccccc
Q 037279 154 SHQMYLIFDSQGLES-------MTAPFVLQEFVNHGGFIFKVYVAGMNVKCVKRKSLPDISEEKLKSLKGFLPFSRISNL 226 (327)
Q Consensus 154 sh~m~lv~~~~~l~~-------l~~p~vvQefI~h~g~d~KV~ViG~~v~~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~ 226 (327)
|+++.++.+.++|.. ...++++||||+ |++++|.++|+++....+....+ +.+.|. +++
T Consensus 151 ~~gv~~v~~~~el~~~~~~~~~~~~~~lvee~i~--g~e~~v~~~~g~~~~~~~~~~~~----------~~~~~~--~~~ 216 (306)
T 1iow_A 151 SVGMSKVVAENALQDALRLAFQHDEEVLIEKWLS--GPEFTVAILGEEILPSIRIQPSG----------TFYDYE--AKF 216 (306)
T ss_dssp TTTCEEESSGGGHHHHHHHHTTTCSEEEEEECCC--CCEEEEEEETTEECCCEEEECSS----------SSSCHH--HHH
T ss_pred CCCEEEeCCHHHHHHHHHHHHhhCCCEEEEeCcC--CEEEEEEEECCCccceEEEEeCC----------CeEchh--hee
Confidence 578999999988753 357899999997 89999999999875433222111 112221 121
Q ss_pred ccCCcccccCCCCCCCCCccccccCCCCc--HHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCcEEEEEEcCCCCCCCC
Q 037279 227 IDNDKKVHDDGKKNSQGDEVDLESVEMPS--QSFLCELARGMREALGLN-LFNFDVMRDARDSNRYLIIDVNYFPGYAKM 303 (327)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~VidVN~fPg~~g~ 303 (327)
..+. .....+..++. .++++++|.++.++||+. ++++|++.+. +|+ ++++|||..||+.+.
T Consensus 217 ~~g~--------------~~~~~p~~l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~~~-~g~-~~~iEiN~rpg~~~~ 280 (306)
T 1iow_A 217 LSDE--------------TQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDS-DGQ-FYLLEANTSPGMTSH 280 (306)
T ss_dssp TCSC--------------CEEESSCCCCHHHHHHHHHHHHHHHHHHTCCSEEEEEEEECT-TSC-EEEEEEESSCCCSTT
T ss_pred cCCC--------------eeEEcCCCCCHHHHHHHHHHHHHHHHHcCCceEEEEEEEEcC-CCC-EEEEEecCCCCCCCC
Confidence 1110 00011112221 357899999999999996 9999999975 454 899999999999764
No 11
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=99.91 E-value=9.9e-24 Score=201.40 Aligned_cols=254 Identities=18% Similarity=0.232 Sum_probs=169.6
Q ss_pred ceEEEEEeCC-cccc--cc-chhHHHHHHHhCCCeEEEeCCCCCc-----------------------------------
Q 037279 9 RFRIGYALAP-KKGQ--SL-IQPSLLTKASERGIDLIPIDPIKPL----------------------------------- 49 (327)
Q Consensus 9 ~~~vG~~~~~-~k~~--~~-~~~~l~~~~~~~gi~~~~ld~~~~l----------------------------------- 49 (327)
+.+|++++=- +-+. ++ .-..+.+++++.|+++++||+.+..
T Consensus 3 ~~~v~vl~GG~s~e~~vSl~sa~~v~~al~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (346)
T 3se7_A 3 HMKIGIIFGGVSEEHDISVKSAREVATHLGTGVFEPFYLGITKSGAWQLCDGPGENWEDGNCRPAVLSPDRSVHGLLVLE 82 (346)
T ss_dssp CEEEEEEEECSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEESCSSSSSSSSCCEEEEECCCTTTCEEEEEE
T ss_pred CCEEEEEeeecCCCccHHHHHHHHHHHHhcccCCEEEEEEECCCCCEEeccchhhhhcccccccceeccCccCccceecc
Confidence 4466666632 2222 22 2223667788899999999977531
Q ss_pred ---cccCCccEEEEccCchhHH-HHHHHHHHhCCCCcccCc-HHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEc
Q 037279 50 ---VEQGPFDCIVHKLYGPDWT-RQLQQFSSQNPNVPIIDS-PDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVS 124 (327)
Q Consensus 50 ---~~q~~~Dvilhk~~~~~~~-~~l~~~~~~~p~v~Vid~-~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~ 124 (327)
..+..+|++++-+...... ..++.++.. .|++++.| +.++..++||..|.++|.+ .|||+|++.++.
T Consensus 83 ~~~~~~~~~D~v~~~lhG~~gedg~iq~~le~-~gip~~g~~~~a~~~~~dK~~~k~~l~~-------~Gip~p~~~~~~ 154 (346)
T 3se7_A 83 QGKYETIRLDLVLPVLHGKLGEDGAIQGLLEL-SGIPYVGCDIQSSALCMDKSLTYLVARS-------AGIATPNFWTVT 154 (346)
T ss_dssp TTEEEEEECSEEEECCCSTTTTSSHHHHHHHH-HCCCBSSCCHHHHHHHHSHHHHHHHHHH-------TTCBCCCEEEEE
T ss_pred cccccccCCCEEEEccCCCCCCChHHHHHHHH-cCCCeeCcCHHHHHHHhCHHHHHHHHHH-------cCcCcCCEEEEc
Confidence 0122579999888543211 234444433 47988875 8999999999999999998 699999999998
Q ss_pred CccchhHHHhccCCCcEEEeeccCCCCccceeeEEEeChhhhcc-------CCCceEEEeccCCCCeEEEEEEECC----
Q 037279 125 EMKSLTSIEDLKLTFPVIAKPLVADGSVKSHQMYLIFDSQGLES-------MTAPFVLQEFVNHGGFIFKVYVAGM---- 193 (327)
Q Consensus 125 ~~~~~~~~~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~~~~~l~~-------l~~p~vvQefI~h~g~d~KV~ViG~---- 193 (327)
+.+. . ....++||+|+||..++| |.++.++.++++|.. ...++++||||+ |+++.|.|+++
T Consensus 155 ~~~~--~-~~~~lg~PvvvKP~~~~~---s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~--G~E~~v~vl~~~~~~ 226 (346)
T 3se7_A 155 ADEK--I-PTDQLTYPVFVKPARSGS---SFGVSKVAREEDLQGAVEAAREYDSKVLIEEAVI--GTEIGCAVMGNGPEL 226 (346)
T ss_dssp TTSC--C-CTTTCCSSEEEEESSCCT---TTTCEEECSHHHHHHHHHHHTTTCSEEEEEECCC--SEEEEEEEEEETTEE
T ss_pred CcHH--H-HHHhcCCCEEEEeCCCCC---CcCEEEECCHHHHHHHHHHHHhCCCcEEEEeCcC--CEEEEEEEEecCCCe
Confidence 7551 1 245789999999999753 588999999988753 357899999997 89999999988
Q ss_pred EEEEEEeccCCCchhhhhhhcCCcccccc--ccccccCCcccccCCCCCCCCCccccccCCCCc--HHHHHHHHHHHHHH
Q 037279 194 NVKCVKRKSLPDISEEKLKSLKGFLPFSR--ISNLIDNDKKVHDDGKKNSQGDEVDLESVEMPS--QSFLCELARGMREA 269 (327)
Q Consensus 194 ~v~~~~R~S~~~~~~~~~~~~~g~~~f~~--~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~lA~~~~~~ 269 (327)
.+..+.+.... .+++.|+. ..++..+. . . ...+..++. .++++++|.++.++
T Consensus 227 ~~~~~~e~~~~----------~~~~d~~q~~~~ky~~~~---~--------~---~~~pa~l~~~~~~~i~~~a~~~~~~ 282 (346)
T 3se7_A 227 ITGEVDQITLS----------HGFFKIHQESTPESGSDN---S--------A---VTVPADISTTSRSLVQDTAKAVYRA 282 (346)
T ss_dssp EECCCEEECCC------------------------CGGG---S--------C---EESSCCCCHHHHHHHHHHHHHHHHH
T ss_pred EEEeeEEEecC----------CCCcCcccchhccccCCC---e--------e---EEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 33223332211 12334400 01221110 0 0 111222332 45789999999999
Q ss_pred hCC-cEeEEEEEEeCCCCCcEEEEEEcCCCCCCCCC
Q 037279 270 LGL-NLFNFDVMRDARDSNRYLIIDVNYFPGYAKMP 304 (327)
Q Consensus 270 lGl-~l~G~Dvi~~~~~g~~~~VidVN~fPg~~g~~ 304 (327)
||+ .++++|++.+.+ | ++|++|||..||+.+..
T Consensus 283 lg~~G~~~vD~~~~~~-g-~~~vlEiN~rPG~t~~s 316 (346)
T 3se7_A 283 LGCRGLSRVDLFLTED-G-KVVLNEVNTFPGMTSYS 316 (346)
T ss_dssp HTCCEEEEEEEEECTT-S-CEEEEEEESSCCCSTTC
T ss_pred hCCceEEEEEEEEeCC-C-CEEEEEEeCCCCCCccc
Confidence 999 588999999863 5 49999999999998654
No 12
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=99.90 E-value=1.9e-23 Score=217.68 Aligned_cols=255 Identities=15% Similarity=0.193 Sum_probs=171.2
Q ss_pred cchhHHHHHHHhCCCeEEEeCCCCCccccC---CccEEEEccCchhHHHHHHHHHHhCCCCcccCcHHHHHHhcCHHHHH
Q 037279 24 LIQPSLLTKASERGIDLIPIDPIKPLVEQG---PFDCIVHKLYGPDWTRQLQQFSSQNPNVPIIDSPDSIERLHNRISML 100 (327)
Q Consensus 24 ~~~~~l~~~~~~~gi~~~~ld~~~~l~~q~---~~Dvilhk~~~~~~~~~l~~~~~~~p~v~Vid~~~ai~~~~dR~~~~ 100 (327)
+..+.++++|+++||+++.||++.++...+ .++.+.. ..+.-.++..++..+.||..+.
T Consensus 428 ~S~~~l~~aA~~~Gi~v~vidp~~~l~~l~~~~~~~~~~~------------------g~itg~~~~~a~~~~~DK~~tk 489 (750)
T 3ln6_A 428 LSTQLLLFDVIQKGVNFEVLDEQDQFLKLWHNSHIEYVKN------------------GNMTSKDNYIVPLAMANKVVTK 489 (750)
T ss_dssp HHHHHHHHHHHHHTCEEEESCSSSCEEEEEETTEEEEEET------------------TTBCTTSCTHHHHHTTTSHHHH
T ss_pred ccHHHHHHHHHhCCCCEEEECCCchHhhhccCCCcEEEec------------------CCeeCCCHHHHHHHHhCHHHHH
Confidence 345679999999999999999987654321 2233322 1245667888999999999999
Q ss_pred HHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEEEeeccCCCCccceeeEEEe---Chhhhcc-------CC
Q 037279 101 EVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKPLVADGSVKSHQMYLIF---DSQGLES-------MT 170 (327)
Q Consensus 101 ~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~---~~~~l~~-------l~ 170 (327)
++|.+ .|||+|++.++.+.+++.+.....++||+|+||..|+ .|.||.++. +.+++.. ..
T Consensus 490 ~lL~~-------~GIPvP~~~~~~~~~ea~~~~~~~~g~PvVVKP~~G~---~G~GV~iv~~~~s~eel~~a~~~~~~~~ 559 (750)
T 3ln6_A 490 KILDE-------KHFPTPFGDEFTDRKEALNYFSQIQDKPIVVKPKSTN---FGLGISIFKTSANLASYEKAIDIAFTED 559 (750)
T ss_dssp HHHHH-------TTCCCCCCCCEETTTTHHHHHHHSSSSCEEEEETTCC---SSSSCEEESSCCCHHHHHHHHHHHHHHC
T ss_pred HHHHH-------CCcCCCCEEEECCHHHHHHHHHHhcCCcEEEEeCCCC---CCCCEEEEeCCCCHHHHHHHHHHHHhhC
Confidence 99998 6999999999998877755444678999999998874 467999998 7777642 25
Q ss_pred CceEEEeccCCCCeEEEEEEECCEEEEEEeccCCCchh-h-----hhh--hc----CC--c-------------------
Q 037279 171 APFVLQEFVNHGGFIFKVYVAGMNVKCVKRKSLPDISE-E-----KLK--SL----KG--F------------------- 217 (327)
Q Consensus 171 ~p~vvQefI~h~g~d~KV~ViG~~v~~~~R~S~~~~~~-~-----~~~--~~----~g--~------------------- 217 (327)
.++++||||+ |++++|+|+||+++++.++..+++.. | +.. .. .| .
T Consensus 560 ~~vlVEefI~--G~E~~v~Vvgg~vvaa~~r~p~~v~GdG~~tI~eLI~~~n~dp~rg~~~~~~l~~i~~d~~~~~~l~~ 637 (750)
T 3ln6_A 560 SAILVEEYIE--GTEYRFFVLEGDCIAVLLRVAANVVGDGIHTISQLVKLKNQNPLRGYDHRSPLEVIELGEVEQLMLEQ 637 (750)
T ss_dssp SEEEEEECCC--SEEEEEEEETTEEEEEEEEECCEEECCTTCCHHHHHHHHTTCTTEESSSCCSEECCCCCHHHHHHHHH
T ss_pred CcEEEEeccC--CCEEEEEEECCEEEEEEEEecceEecCCccCHHHHHHhhccCccccccccCccccccccHHHHHHHHH
Confidence 6899999996 89999999999999855443333210 0 000 00 00 0
Q ss_pred --cccccccccccCCcccccCCCCC-CCCCccccccCCCCcHHHHHHHHHHHHHHhCCcEeEEEEEEeC-------CCCC
Q 037279 218 --LPFSRISNLIDNDKKVHDDGKKN-SQGDEVDLESVEMPSQSFLCELARGMREALGLNLFNFDVMRDA-------RDSN 287 (327)
Q Consensus 218 --~~f~~~s~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~lA~~~~~~lGl~l~G~Dvi~~~-------~~g~ 287 (327)
+.++++ +...+....+.++| +.|.. .....-...++++++|.++++++|+.++|||++.++ ..|
T Consensus 638 ~g~~~~~V---~~~Ge~v~L~~~~Nls~Gg~--~~d~td~i~p~~~~~a~~aa~~igl~~~GvDli~~di~~~~~~~~~- 711 (750)
T 3ln6_A 638 QGYTVNSI---PPEGTKIELRRNSNISTGGD--SIDVTNTMDPTYKQLAAEMAEAMGAWVCGVDLIIPNATQAYSKDKK- 711 (750)
T ss_dssp TTCCSSCC---CCTTCEEESCSSCCTTTTCE--EEECTTTSCHHHHHHHHHHHHHHTCSSCEEEEEESCSSSCCCTTTT-
T ss_pred cCCCcccc---CCCCCEEEEeecccccCCCc--eeeccccCCHHHHHHHHHHHHHhCCCeEEEEEEecCccccccccCC-
Confidence 001110 00000000000111 12211 111111235688999999999999999999999974 223
Q ss_pred cEEEEEEcCCCCCCCC--------CChHHHHHHHH
Q 037279 288 RYLIIDVNYFPGYAKM--------PGYESIMTDFF 314 (327)
Q Consensus 288 ~~~VidVN~fPg~~g~--------~~~~~~l~~~~ 314 (327)
.++|||||..||+.+. .+++..|++++
T Consensus 712 ~~~iiEvN~~pg~~~h~~p~~g~~~~v~~~ii~~l 746 (750)
T 3ln6_A 712 NATCIELNFNPLMYMHTYCQEGPGQSITPRILAKL 746 (750)
T ss_dssp CCEEEEEESSCCCHHHHSCSBSCCCCCHHHHHHHH
T ss_pred CeEEEEEcCCcchhhhcCcccCCCCcHHHHHHHHh
Confidence 3899999999998654 46778887765
No 13
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=99.89 E-value=1.3e-21 Score=189.15 Aligned_cols=258 Identities=16% Similarity=0.194 Sum_probs=175.7
Q ss_pred ceEEEEEeCCcccc-cc---chhHHHHHH-HhCCCeEEEeCCCCC--------------------cc-------------
Q 037279 9 RFRIGYALAPKKGQ-SL---IQPSLLTKA-SERGIDLIPIDPIKP--------------------LV------------- 50 (327)
Q Consensus 9 ~~~vG~~~~~~k~~-~~---~~~~l~~~~-~~~gi~~~~ld~~~~--------------------l~------------- 50 (327)
+.+|++++.-.-.| .. .-..+++++ ++.|+++++||++.. +.
T Consensus 3 k~~v~vl~gG~s~E~~vSl~s~~~v~~al~~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (377)
T 1ehi_A 3 KKRVALIFGGNSSEHDVSKRSAQNFYNAIEATGKYEIIVFAIAQNGFFLDTESSKKILALEDEQPIVDAFMKTVDASDPL 82 (377)
T ss_dssp CEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHSSEEEEEEEECTTSCBCCHHHHHHHHTTCCHHHHHHHHHTSCCTTCTT
T ss_pred CcEEEEEeCCCCCCcceeHHHHHHHHHHhCcccCcEEEEEEEcCCCCEEecccccccccccchhhhcccccccccccccc
Confidence 45788888664332 11 134577889 999999999986531 11
Q ss_pred -------ccCCccEEEEccCchhH-HHHHHHHHHhCCCCccc-CcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEE
Q 037279 51 -------EQGPFDCIVHKLYGPDW-TRQLQQFSSQNPNVPII-DSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQV 121 (327)
Q Consensus 51 -------~q~~~Dvilhk~~~~~~-~~~l~~~~~~~p~v~Vi-d~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~ 121 (327)
+...+|+++..+..... ...++..+.. .|++++ +++.++..++||..|.++|.+ .|||+|+++
T Consensus 83 ~~~~~~~~~~~~D~v~~~~~g~~gedg~~~~lle~-~gip~~G~~~~a~~~~~DK~~~k~~l~~-------~Gip~p~~~ 154 (377)
T 1ehi_A 83 ARIHALKSAGDFDIFFPVVHGNLGEDGTLQGLFKL-LDKPYVGAPLRGHAVSFDKALTKELLTV-------NGIRNTKYI 154 (377)
T ss_dssp CTTGGGGTTCCCSEEEEECCSTTTSSSHHHHHHHH-TTCCBSSCCHHHHHHHHSHHHHHHHHHT-------TTCCCCCEE
T ss_pred CcchhhccccCCCEEEEecCCCCCcCHHHHHHHHH-cCCCEeCcCHHHHHHHcCHHHHHHHHHH-------cCCCCCCEE
Confidence 01257999988754211 1134444433 489988 999999999999999999998 699999999
Q ss_pred EEcCccc----hhHHHhccCCCcEEEeeccCCCCccceeeEEEeChhhhcc-------CCCceEEEeccCCCC-eEEEEE
Q 037279 122 VVSEMKS----LTSIEDLKLTFPVIAKPLVADGSVKSHQMYLIFDSQGLES-------MTAPFVLQEFVNHGG-FIFKVY 189 (327)
Q Consensus 122 ~~~~~~~----~~~~~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~~~~~l~~-------l~~p~vvQefI~h~g-~d~KV~ 189 (327)
++.+.++ +.+ ....++||+|+||..++| |.++.++.++++|.. ...++++||||+ | +++.|.
T Consensus 155 ~~~~~~~~~~~~~~-~~~~~g~PvvVKP~~~~~---s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~--G~~E~~v~ 228 (377)
T 1ehi_A 155 VVDPESANNWSWDK-IVAELGNIVFVKAANQGS---SVGISRVTNAEEYTEALSDSFQYDYKVLIEEAVN--GARELEVG 228 (377)
T ss_dssp EECTTGGGGCCHHH-HHHHHCSCEEEEESSCCT---TTTEEEECSHHHHHHHHHHHTTTCSCEEEEECCC--CSCEEEEE
T ss_pred EEeccccchHHHHH-HHHhcCCCEEEEeCCCCC---CcCEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCC--CCceEEEE
Confidence 9987644 322 234689999999999753 578999999988753 356899999995 7 999999
Q ss_pred EECCE---EEEEEeccCCCchhhhhhhcCCccccccccccccC-CcccccCCCCCCCCCccccccCCCCc--HHHHHHHH
Q 037279 190 VAGMN---VKCVKRKSLPDISEEKLKSLKGFLPFSRISNLIDN-DKKVHDDGKKNSQGDEVDLESVEMPS--QSFLCELA 263 (327)
Q Consensus 190 ViG~~---v~~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~lA 263 (327)
|+|+. +....+.-.... ....+++.|.. ++..+ . . . ...+..++. .++++++|
T Consensus 229 vl~~~~~~~~~~~ei~~~~~-----~~~~~~~d~~~--k~~~g~~---~--------~---~~~Pa~l~~~~~~~i~~~a 287 (377)
T 1ehi_A 229 VIGNDQPLVSEIGAHTVPNQ-----GSGDGWYDYNN--KFVDNSA---V--------H---FQIPAQLSPEVTKEVKQMA 287 (377)
T ss_dssp EEESSSCEEEEEEEEECTTS-----SSSSCCCCHHH--HTTCCTT---C--------E---EESSCCCCHHHHHHHHHHH
T ss_pred EEcCCCcEEEeeEEEEecCC-----CCcCceeCHHh--cccCCCC---e--------e---EEeCCCCCHHHHHHHHHHH
Confidence 99984 444332211000 00112333331 22111 0 0 0 011222322 45789999
Q ss_pred HHHHHHhCCc-EeEEEEEEeCCCCCcEEEEEEcCCCCCCCC
Q 037279 264 RGMREALGLN-LFNFDVMRDARDSNRYLIIDVNYFPGYAKM 303 (327)
Q Consensus 264 ~~~~~~lGl~-l~G~Dvi~~~~~g~~~~VidVN~fPg~~g~ 303 (327)
.++.++||+. +++||++.+. +|+ +||+|||..||+...
T Consensus 288 ~~~~~alg~~G~~~vD~~~~~-~g~-~~vlEiN~rpg~t~~ 326 (377)
T 1ehi_A 288 LDAYKVLNLRGEARMDFLLDE-NNV-PYLGEPNTLPGFTNM 326 (377)
T ss_dssp HHHHHHTTCCEEEEEEEEECT-TCC-EEEEEEESSCCCSTT
T ss_pred HHHHHHcCCCcEEEEEEEEeC-CCC-EEEEEEeCCCCCCcc
Confidence 9999999998 8899999975 354 899999999998765
No 14
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=99.89 E-value=2.4e-22 Score=192.99 Aligned_cols=253 Identities=17% Similarity=0.186 Sum_probs=167.0
Q ss_pred ceEEEEEeCCcc-cccc---chhHHHHHHHhCCCeEEEeCCCCC------------------cc----------------
Q 037279 9 RFRIGYALAPKK-GQSL---IQPSLLTKASERGIDLIPIDPIKP------------------LV---------------- 50 (327)
Q Consensus 9 ~~~vG~~~~~~k-~~~~---~~~~l~~~~~~~gi~~~~ld~~~~------------------l~---------------- 50 (327)
+.+|++++...- +... .-..+++++++.|++++.+|.+.. +.
T Consensus 3 ~~~v~vl~gg~s~E~~vs~~s~~~v~~al~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (364)
T 2i87_A 3 KENICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTDELHLENGEALEISQLLKES 82 (364)
T ss_dssp CEEEEEEEECSSSCHHHHHHHHHHHHHTSCTTTEEEEEEEECTTCCEEEECCCCSCCCSGGGSCGGGSEEECSSGGGGBC
T ss_pred CcEEEEEECCCCccchhHHHHHHHHHHHHhhcCCEEEEEEEcCCCCEEeccccccccccchhhccccccccccccccccc
Confidence 456777775432 2221 124577888899999999975421 11
Q ss_pred -ccCCccEEEEccCchhH-HHHHHHHHHhCCCCcccCc-HHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCcc
Q 037279 51 -EQGPFDCIVHKLYGPDW-TRQLQQFSSQNPNVPIIDS-PDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMK 127 (327)
Q Consensus 51 -~q~~~Dvilhk~~~~~~-~~~l~~~~~~~p~v~Vid~-~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~ 127 (327)
....+|+++..+..... ...++..+.. .|++++.| ++++..++||+.+.++|.+ .|||+|+++.+.+.+
T Consensus 83 ~~~~~~D~v~~~~~g~~~ed~~~~~~le~-~gip~~g~~~~~~~~~~dK~~~k~~l~~-------~Gip~p~~~~~~~~~ 154 (364)
T 2i87_A 83 SSGQPYDAVFPLLHGPNGEDGTIQGLFEV-LDVPYVGNGVLSAASSMDKLVMKQLFEH-------RGLPQLPYISFLRSE 154 (364)
T ss_dssp TTSSBCSEEEEECCCSSSCTTHHHHHHHH-HTCCBSSCCHHHHHHHHSHHHHHHHHHH-------HTCCCCCEEEEEHHH
T ss_pred ccccCCCEEEEeCCCCCCcCHHHHHHHHH-cCCCccCCCHHHHHHHcCHHHHHHHHHH-------CCCCCCCEEEEechh
Confidence 11257999987743100 0123333332 37988865 9999999999999999998 599999999998754
Q ss_pred -------chhHHHhccCCCcEEEeeccCCCCccceeeEEEeChhhhcc-------CCCceEEEeccCCCCeEEEEEEECC
Q 037279 128 -------SLTSIEDLKLTFPVIAKPLVADGSVKSHQMYLIFDSQGLES-------MTAPFVLQEFVNHGGFIFKVYVAGM 193 (327)
Q Consensus 128 -------~~~~~~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~~~~~l~~-------l~~p~vvQefI~h~g~d~KV~ViG~ 193 (327)
++.+ ....++||+|+||..|+| |.++.++.+.++|.. ...++++||||+ |+++.|.|+|+
T Consensus 155 ~~~~~~~~~~~-~~~~~g~PvvvKP~~g~~---s~Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~I~--G~E~~v~vl~~ 228 (364)
T 2i87_A 155 YEKYEHNILKL-VNDKLNYPVFVKPANLGS---SVGISKCNNEAELKEGIKEAFQFDRKLVIEQGVN--AREIEVAVLGN 228 (364)
T ss_dssp HHHHHHHHHHH-HHHHCCSSEEEEESSCSS---CTTCEEESSHHHHHHHHHHHHTTCSEEEEEECCC--CEEEEEEEEES
T ss_pred hcccchhHHHH-HHHhcCCCEEEEeCCCCC---CCCEEEECCHHHHHHHHHHHHhcCCeEEEEeCcc--CeEEEEEEEcC
Confidence 2222 235689999999999754 579999999988753 357899999996 89999999998
Q ss_pred E---EEEEEeccCCCchhhhhhhcCCccccccccccccCCcccccCCCCCCCCCccccccCCCCc--HHHHHHHHHHHHH
Q 037279 194 N---VKCVKRKSLPDISEEKLKSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVEMPS--QSFLCELARGMRE 268 (327)
Q Consensus 194 ~---v~~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~lA~~~~~ 268 (327)
. +....+... ..+++.|.. ++..+. . + ...+..++. .++++++|.++.+
T Consensus 229 ~~~~~~~~~e~~~----------~~~~~~~~~--k~~~g~---~--------~---~~~pa~l~~~~~~~i~~~a~~~~~ 282 (364)
T 2i87_A 229 DYPEATWPGEVVK----------DVAFYDYKS--KYKDGK---V--------Q---LQIPADLDEDVQLTLRNMALEAFK 282 (364)
T ss_dssp SSCEECCCEEECC----------SCCC----------------C--------C---EESSCSSCHHHHHHHHHHHHHHHH
T ss_pred CCcEEeeeEEEec----------CCCcCCHHH--cccCCC---e--------e---EEeCCCCCHHHHHHHHHHHHHHHH
Confidence 5 221111110 012333331 222110 0 0 011222222 4578999999999
Q ss_pred HhCC-cEeEEEEEEeCCCCCcEEEEEEcCCCCCCCC
Q 037279 269 ALGL-NLFNFDVMRDARDSNRYLIIDVNYFPGYAKM 303 (327)
Q Consensus 269 ~lGl-~l~G~Dvi~~~~~g~~~~VidVN~fPg~~g~ 303 (327)
+||+ .+++||++.+. +|+ +||+|||..||+...
T Consensus 283 alg~~G~~~vD~~~~~-~g~-~~viEiN~rpg~t~~ 316 (364)
T 2i87_A 283 ATDCSGLVRADFFVTE-DNQ-IYINETNAMPGFTAF 316 (364)
T ss_dssp HTTCCEEEEEEEEECT-TCC-EEEEEEESSCCCSTT
T ss_pred HcCCCcEEEEEEEEec-CCC-EEEEEEeCCCCCCch
Confidence 9999 59999999975 454 899999999999765
No 15
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=99.88 E-value=6.3e-22 Score=192.01 Aligned_cols=257 Identities=16% Similarity=0.168 Sum_probs=163.9
Q ss_pred ceEEEEEeCC---ccccccc-hhHHHHHHHhCCCeEEEeCCCCC--c----------c------cc--------------
Q 037279 9 RFRIGYALAP---KKGQSLI-QPSLLTKASERGIDLIPIDPIKP--L----------V------EQ-------------- 52 (327)
Q Consensus 9 ~~~vG~~~~~---~k~~~~~-~~~l~~~~~~~gi~~~~ld~~~~--l----------~------~q-------------- 52 (327)
+.+|++++=- -+.=++. -..+++++++.|+++++||+++. . . ..
T Consensus 37 ~~~v~vl~GG~S~E~evSl~Sa~~v~~al~~~~~~v~~i~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (383)
T 3k3p_A 37 KETLVLLYGGRSAERDVSVLSAESVMRAINYDNFLVKTYFITQAGDFIKTQEFDSQPSETDKLMTNDTIIASQKIKPSDI 116 (383)
T ss_dssp CEEEEEEEECSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEEEEESSCCC--CCCCCTTSCCGGGEECGGGG
T ss_pred CCeEEEEeCCCCCcchHHHHHHHHHHHHhhhcCCEEEEEEecCCCCEEeccccccccccccccccccccccccccccccc
Confidence 4478888832 2222222 23367788889999999997742 0 0 00
Q ss_pred -CCccEEEEccCchhH-HHHHHHHHHhCCCCccc-CcHHHHHHhcCHHHHHHHHHhcccccCCCC-cCCCeEEEEcCccc
Q 037279 53 -GPFDCIVHKLYGPDW-TRQLQQFSSQNPNVPII-DSPDSIERLHNRISMLEVVTQLKLHFDNEK-FGVPNQVVVSEMKS 128 (327)
Q Consensus 53 -~~~Dvilhk~~~~~~-~~~l~~~~~~~p~v~Vi-d~~~ai~~~~dR~~~~~~L~~~~~~~~~~~-i~~P~~~~~~~~~~ 128 (327)
..+|+++.-+..... ...++.+++. .|++++ +++.++.+++||..|.++|.+ .| ||+|+++++.+.+.
T Consensus 117 ~~~~D~vf~~lhG~~GEdg~iq~lle~-~gipy~G~~~~a~~~~~DK~~~k~~l~~-------~G~Ipvp~~~~~~~~~~ 188 (383)
T 3k3p_A 117 YEEEAVVFPVLHGPMGEDGSIQGFLEV-LKMPYVGTNILSSSVAMDKITTNQVLES-------ATTIPQVAYVALIEGEP 188 (383)
T ss_dssp CCTTCEEEEECCSTTTSSSHHHHHHHH-TTCCBSSCCHHHHHHHHCHHHHHHHHHH-------HCCCCBCCEEEEETTSC
T ss_pred ccCCCEEEEcCCCCCcchHHHHHHHHH-cCCCccCCCHHHHHHHhCHHHHHHHHHh-------CCCcCCCCEEEEeCccc
Confidence 146999987754311 1234455444 488877 579999999999999999998 59 99999999987643
Q ss_pred h---hHHHhccCCCcEEEeeccCCCCccceeeEEEeChhhhcc-------CCCceEEEeccCCCCeEEEEEEECCEEEEE
Q 037279 129 L---TSIEDLKLTFPVIAKPLVADGSVKSHQMYLIFDSQGLES-------MTAPFVLQEFVNHGGFIFKVYVAGMNVKCV 198 (327)
Q Consensus 129 ~---~~~~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~~~~~l~~-------l~~p~vvQefI~h~g~d~KV~ViG~~v~~~ 198 (327)
. .......++||+|+||..++| |.++.++.++++|.. .+.++++||||+ |+++.|.|+|+....+
T Consensus 189 ~~~~~~~~~~~lg~PvvVKP~~ggs---s~GV~~v~~~~el~~al~~a~~~~~~vlVEe~I~--G~E~~v~vl~d~~~~~ 263 (383)
T 3k3p_A 189 LESKLAEVEEKLIYPVFVKPANMGS---SVGISKAENRTDLKQAIALALKYDSRVLIEQGVD--AREIEVGILGNTDVKT 263 (383)
T ss_dssp HHHHHHHHHHHCCSSEEEEECC---------CEEESSHHHHHHHHHHHHHHCSEEEEEECCC--SEEEEEEEEESSSCEE
T ss_pred hhHHHHHHHHhcCCCEEEEeCCCCC---CCCEEEECCHHHHHHHHHHHHhCCCeEEEEcCCC--CeEEEEEEEeCCCeeE
Confidence 2 111256799999999998743 689999999988753 256899999996 8999999999853111
Q ss_pred EeccCCCchhhhhhhcCCccccccccccccCCcccccCCCCCCCCCccccccCCCCc--HHHHHHHHHHHHHHhCCc-Ee
Q 037279 199 KRKSLPDISEEKLKSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVEMPS--QSFLCELARGMREALGLN-LF 275 (327)
Q Consensus 199 ~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~lA~~~~~~lGl~-l~ 275 (327)
+.+ .+.....+++.|.. ++..+. . ....+..++. .++++++|.++.++||+. ++
T Consensus 264 ---~~~----~ei~~~~~~~d~~~--ky~~g~---~-----------~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~ 320 (383)
T 3k3p_A 264 ---TLP----GEIVKDVAFYDYEA--KYIDNK---I-----------TMAIPAEIDPVIVEKMRDYAATAFRTLGCCGLS 320 (383)
T ss_dssp ---CCC----EEEC---------------------------------CEESSCCCCHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred ---Eee----EEEecCCCccchhh--cccCCC---e-----------eEEecCCCCHHHHHHHHHHHHHHHHHcCCceEE
Confidence 100 01111123444442 332111 0 0112222332 457899999999999997 88
Q ss_pred EEEEEEeCCCCCcEEEEEEcCCCCCCCC
Q 037279 276 NFDVMRDARDSNRYLIIDVNYFPGYAKM 303 (327)
Q Consensus 276 G~Dvi~~~~~g~~~~VidVN~fPg~~g~ 303 (327)
++|++.+.+ |+ +||+|||..||+...
T Consensus 321 ~vDf~~~~~-g~-~~vlEINtrPG~t~~ 346 (383)
T 3k3p_A 321 RCDFFLTED-GK-VYLNELNTMPGFTQW 346 (383)
T ss_dssp EEEEEECTT-CC-EEEEEEESSCCCC--
T ss_pred EEEEEEECC-CC-EEEEEeeCCCCCCcc
Confidence 899999853 54 899999999998764
No 16
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=99.88 E-value=2.4e-21 Score=188.04 Aligned_cols=256 Identities=16% Similarity=0.228 Sum_probs=170.0
Q ss_pred CceEEEEEeCC-c--cccccch-hHHHHHHHhCCCeEEEeCCCCCc----------------------------------
Q 037279 8 QRFRIGYALAP-K--KGQSLIQ-PSLLTKASERGIDLIPIDPIKPL---------------------------------- 49 (327)
Q Consensus 8 ~~~~vG~~~~~-~--k~~~~~~-~~l~~~~~~~gi~~~~ld~~~~l---------------------------------- 49 (327)
.+.+|++++=- + +.=++.. ..+++++++.|+++++||+.+.-
T Consensus 21 ~~~~v~vl~GG~S~E~evSl~Sa~~v~~al~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (386)
T 3e5n_A 21 RKIRVGLIFGGKSAEHEVSLQSARNILDALDPQRFEPVLIGIDKQGQWHVNDPDSFLLHADDPARIALHRSGRGVALLPG 100 (386)
T ss_dssp CCEEEEEEEECSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEECGGGSEESTTCTTTCEECCCCCCEEECTT
T ss_pred CCceEEEEeccCCCCchhHHHHHHHHHHHhCccCCEEEEEEECCCCCEEecccchhhccccccccccccccccceeeccC
Confidence 46788888743 2 2222222 23667778899999999966420
Q ss_pred ------------cccCCccEEEEccCchhHH-HHHHHHHHhCCCCccc-CcHHHHHHhcCHHHHHHHHHhcccccCCCCc
Q 037279 50 ------------VEQGPFDCIVHKLYGPDWT-RQLQQFSSQNPNVPII-DSPDSIERLHNRISMLEVVTQLKLHFDNEKF 115 (327)
Q Consensus 50 ------------~~q~~~Dvilhk~~~~~~~-~~l~~~~~~~p~v~Vi-d~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i 115 (327)
.....+|+++.-+...... ..++..+.. .|++++ +++.++.+++||..|.++|.+ .||
T Consensus 101 ~~~~~~~~~~~~~~~~~~D~vf~~lhG~~gEdg~iq~lle~-~gipy~G~~~~a~~~~~DK~~~k~~l~~-------~GI 172 (386)
T 3e5n_A 101 AQQQQLRPIQPEQALAQIDVVFPIVHGTLGEDGSLQGLLRM-ANLPFVGSGVLGSAVAMDKDMAKRVLRD-------ARL 172 (386)
T ss_dssp CSSSCEEECC--CCCCCCSEEEEEECSHHHHSSHHHHHHHH-TTCCBSSCCHHHHHHHHBHHHHHHHHHH-------TTC
T ss_pred ccccceeccccccccCCCCEEEEcCCCCCCcCHHHHHHHHH-cCCCccCCCHHHHHHHhCHHHHHHHHHH-------CCC
Confidence 0012468888776543221 134555444 478877 578999999999999999998 699
Q ss_pred CCCeEEEEcCcc----chhHHHhccCCCcEEEeeccCCCCccceeeEEEeChhhhcc-------CCCceEEEeccCCCCe
Q 037279 116 GVPNQVVVSEMK----SLTSIEDLKLTFPVIAKPLVADGSVKSHQMYLIFDSQGLES-------MTAPFVLQEFVNHGGF 184 (327)
Q Consensus 116 ~~P~~~~~~~~~----~~~~~~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~~~~~l~~-------l~~p~vvQefI~h~g~ 184 (327)
|+|+++++.+.+ ++.+. ...++||+|+||..++| |.++.++.++++|.. ...++++||||+ |+
T Consensus 173 p~p~~~~~~~~~~~~~~~~~~-~~~lg~PvvVKP~~ggs---s~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~I~--G~ 246 (386)
T 3e5n_A 173 AVAPFVCFDRHTAAHADVDTL-IAQLGLPLFVKPANQGS---SVGVSQVRTADAFAAALALALAYDHKVLVEAAVA--GR 246 (386)
T ss_dssp CBCCEEEEEHHHHTTCCHHHH-HHHHCSSEEEEESBSCS---STTCEEECSGGGHHHHHHHHTTTCSEEEEEECCC--SE
T ss_pred CCCCEEEEeCcccchhhHHHH-HHhcCCCEEEEECCCCc---CCCEEEECCHHHHHHHHHHHHhCCCcEEEEcCCC--Ce
Confidence 999999998755 44332 45689999999999753 578999999988752 356899999996 79
Q ss_pred EEEEEEECCEEE-E--EEeccCCCchhhhhhhcCCccccccccccccCCcccccCCCCCCCCCccccccCCCCc--HHHH
Q 037279 185 IFKVYVAGMNVK-C--VKRKSLPDISEEKLKSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVEMPS--QSFL 259 (327)
Q Consensus 185 d~KV~ViG~~v~-~--~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l 259 (327)
++.|.|+|+... + ..+.. + ..+++.|+. ++..+. +. ....+..++. .+++
T Consensus 247 E~~v~vl~~~~~~~~~~gei~-~---------~~~~~d~~~--ky~~~~------------~~-~~~~Pa~l~~~~~~~i 301 (386)
T 3e5n_A 247 EIECAVLGNAVPHASVCGEVV-V---------HDAFYSYAT--KYISEH------------GA-EIVIPADIDAQTQQRI 301 (386)
T ss_dssp EEEEEEECSSSCEEEEEEEEC-C-----------------------------------------CEESSCSSCHHHHHHH
T ss_pred EEEEEEEeCCCceEEEeEEEE-e---------CCcccchhc--ccCCCC------------Ce-EEEECCCCCHHHHHHH
Confidence 999999998641 1 11211 1 012333332 221100 00 0111222322 4578
Q ss_pred HHHHHHHHHHhCCc-EeEEEEEEeCCCCCcEEEEEEcCCCCCCCCC
Q 037279 260 CELARGMREALGLN-LFNFDVMRDARDSNRYLIIDVNYFPGYAKMP 304 (327)
Q Consensus 260 ~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~VidVN~fPg~~g~~ 304 (327)
+++|.++.++||+. ++++|++.+.+ |+ +|++|||..||+....
T Consensus 302 ~~~a~~~~~aLg~~G~~~vDf~~~~d-g~-~~vlEiN~~PG~t~~S 345 (386)
T 3e5n_A 302 QQIAVQAYQALGCAGMARVDVFLCAD-GR-IVINEVNTLPGFTRIS 345 (386)
T ss_dssp HHHHHHHHHHHTCCSEEEEEEEECTT-CC-EEEEEEESSCCCSTTC
T ss_pred HHHHHHHHHHhCCccEEEEEEEEECC-Cc-EEEEEeECCCCCCccC
Confidence 99999999999997 88999999853 54 8999999999997653
No 17
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=99.88 E-value=2e-21 Score=187.82 Aligned_cols=214 Identities=14% Similarity=0.203 Sum_probs=141.7
Q ss_pred CccEEEEccCchhH-HHHHHHHHHhCCCCcccC-cHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccch--
Q 037279 54 PFDCIVHKLYGPDW-TRQLQQFSSQNPNVPIID-SPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSL-- 129 (327)
Q Consensus 54 ~~Dvilhk~~~~~~-~~~l~~~~~~~p~v~Vid-~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~-- 129 (327)
.+|+++.-+..... ...++.+++. .|++++- ++.++.+++||..|.++|++ .|||+|++.++.+.+..
T Consensus 98 ~~D~vf~~lhG~~gEdg~iq~lle~-~gipy~G~~~~a~~~~~DK~~~k~~l~~-------~GIp~p~~~~~~~~~~~~~ 169 (372)
T 3tqt_A 98 SADCVFPMVHGTQGEDGALQGLLEL-LNLPYVGANVQSSAVCMEKDLTKTVLRA-------GGIPVVDWHTLSPRDATEG 169 (372)
T ss_dssp CCSEEEECCCSTTTTSSHHHHHHHH-TTCCBSSCCHHHHHHHHSHHHHHHHHHH-------TTCCBCCCEEECTTSCCTT
T ss_pred CCCEEEEcCCCCCCcCHHHHHHHHH-cCCCeeCcCHHHHHHHhCHHHHHHHHHH-------CCcCCCCEEEEechhhhhh
Confidence 47999877754321 1135555544 4898874 68999999999999999998 69999999999876531
Q ss_pred -hHHHhccCCCc-EEEeeccCCCCccceeeEEEeChhhhcc-------CCCceEEEeccCCCCeEEEEEEECCEEEEEEe
Q 037279 130 -TSIEDLKLTFP-VIAKPLVADGSVKSHQMYLIFDSQGLES-------MTAPFVLQEFVNHGGFIFKVYVAGMNVKCVKR 200 (327)
Q Consensus 130 -~~~~~~~l~~P-~VvKP~~~~Gs~~sh~m~lv~~~~~l~~-------l~~p~vvQefI~h~g~d~KV~ViG~~v~~~~R 200 (327)
.......++|| +|+||..++ .|.++.++.++++|.. ...++++||||+ |+++.|.|+|+... +
T Consensus 170 ~~~~~~~~lg~P~vvVKP~~gg---ss~Gv~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~--G~E~~v~vl~~~~~---~ 241 (372)
T 3tqt_A 170 VYQRLLDRWGTSELFVKAVSLG---SSVATLPVKTETEFTKAVKEVFRYDDRLMVEPRIR--GREIECAVLGNGAP---K 241 (372)
T ss_dssp HHHHHHHHC---CEEEEESSCC---SGGGEEEECSHHHHHHHHHHHTTTCSCEEEEECCC--SEEEEEEEEESSSC---E
T ss_pred HHHHHHHhcCCCeEEEEECCCC---CCCCEEEECCHHHHHHHHHHHHhcCCCEEEECCCC--CEEEEEEEEeCCCc---e
Confidence 12235679999 999999874 3689999999988752 357899999996 89999999998621 0
Q ss_pred ccCCCchhhhhhhcCCccccccccccccCCcccccCCCCCCCCCccccccCCCCc--HHHHHHHHHHHHHHhCCc-EeEE
Q 037279 201 KSLPDISEEKLKSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVEMPS--QSFLCELARGMREALGLN-LFNF 277 (327)
Q Consensus 201 ~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~lA~~~~~~lGl~-l~G~ 277 (327)
.+.+ ++.....+++.|+. ++..+. + .....+..++. .++++++|.++.++||+. ++++
T Consensus 242 ~~~~----~ei~~~~~~~d~~~--ky~~g~------------~-~~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~rv 302 (372)
T 3tqt_A 242 ASLP----GEIIPHHDYYSYDA--KYLDPN------------G-ATTTTSVDLSESVTKQIQQIAIDAFKMVHCSGMARV 302 (372)
T ss_dssp ECCC----EEEECC------------------------------CEEESCCCCCHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred Eeee----EEEecCCCccchhh--cccCCC------------c-eEEEeCCCCCHHHHHHHHHHHHHHHHHhCCccEEEE
Confidence 0100 01111113344432 221110 0 00111222332 457899999999999998 8889
Q ss_pred EEEEeCCCCCcEEEEEEcCCCCCCCCC
Q 037279 278 DVMRDARDSNRYLIIDVNYFPGYAKMP 304 (327)
Q Consensus 278 Dvi~~~~~g~~~~VidVN~fPg~~g~~ 304 (327)
|++.+. +| ++|++|||..|||+...
T Consensus 303 Df~~~~-dg-~~~vlEINt~PG~t~~S 327 (372)
T 3tqt_A 303 DFFVTP-NN-KVLVNEINTIPGFTNIS 327 (372)
T ss_dssp EEEECT-TC-CEEEEEEESSCCCSTTC
T ss_pred EEEEeC-CC-cEEEEEEECCCCcCccC
Confidence 999986 35 48999999999998654
No 18
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=99.88 E-value=6.7e-22 Score=205.88 Aligned_cols=257 Identities=16% Similarity=0.205 Sum_probs=169.0
Q ss_pred cchhHHHHHHHhCCCeEEEeCCCCCccccCCccEEEEccCchhHHHHHHHHHHhCCCC-cccCcHHHHHHhcCHHHHHHH
Q 037279 24 LIQPSLLTKASERGIDLIPIDPIKPLVEQGPFDCIVHKLYGPDWTRQLQQFSSQNPNV-PIIDSPDSIERLHNRISMLEV 102 (327)
Q Consensus 24 ~~~~~l~~~~~~~gi~~~~ld~~~~l~~q~~~Dvilhk~~~~~~~~~l~~~~~~~p~v-~Vid~~~ai~~~~dR~~~~~~ 102 (327)
+.++.++++|+++|++++.|+++.++...+--|- ++.+ .++. ..-++..++..+.||..+.++
T Consensus 433 ~st~~Iv~~A~~~gid~~vlg~e~~l~~lg~~~~-~~~i---------------g~~~~t~~~s~~aa~~~~DK~~tk~l 496 (757)
T 3ln7_A 433 LSTQALLFDVIQKGIHTEILDENDQFLCLKYGDH-IEYV---------------KNGNMTSHDSYISPLIMENKVVTKKV 496 (757)
T ss_dssp HHHHHHHHHHHHHTCEEEEEETTTTEEEEEETTE-EEEE---------------ETTTBCSSSBSHHHHHHHHSHHHHHH
T ss_pred CCHHHHHHHHHHhCCCEEEECCCHHHHHhccccc-ceee---------------ccCccCCCCHHHHHHHhcCHHHHHHH
Confidence 3466799999999999999999877643221111 1110 1233 345788899999999999999
Q ss_pred HHhcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEEEeeccCCCCccceeeEEE----eChhhhcc-------CCC
Q 037279 103 VTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKPLVADGSVKSHQMYLI----FDSQGLES-------MTA 171 (327)
Q Consensus 103 L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~VvKP~~~~Gs~~sh~m~lv----~~~~~l~~-------l~~ 171 (327)
|.+ .|||||++.++.+.+++.+.....++||+|+||..|+ .|.||.++ .+.+++.. ...
T Consensus 497 L~~-------~GIPvP~~~~~~~~~ea~~~~~~~~g~PvVVKP~~g~---~G~GV~iv~~~v~~~eel~~al~~a~~~~~ 566 (757)
T 3ln7_A 497 LQK-------AGFNVPQSVEFTSLEKAVASYALFENRAVVIKPKSTN---YGLGITIFQQGVQNREDFAKALEIAFREDK 566 (757)
T ss_dssp HHH-------HTCCCCCEEEESCHHHHHHGGGGSSSSCEEEEESSCS---TTTTCEECSSCCCCHHHHHHHHHHHHHHCS
T ss_pred HHH-------CCcCCCCEEEECCHHHHHHHHHHhcCCCEEEEeCCCC---CCCCeEEecCCCCCHHHHHHHHHHHHhcCC
Confidence 998 6999999999988766544333678999999999975 35799998 78877753 256
Q ss_pred ceEEEeccCCCCeEEEEEEECCEEEEEEeccCCCchhhh---------------hhhcCCc-------------------
Q 037279 172 PFVLQEFVNHGGFIFKVYVAGMNVKCVKRKSLPDISEEK---------------LKSLKGF------------------- 217 (327)
Q Consensus 172 p~vvQefI~h~g~d~KV~ViG~~v~~~~R~S~~~~~~~~---------------~~~~~g~------------------- 217 (327)
.+++||||+ |++++|+|+||+++++.++..+++.-++ +.+..+.
T Consensus 567 ~vlVEefI~--G~Ei~v~Vlggkvvaai~R~p~~VvGDG~~ti~eLi~~~n~~p~rg~~~~~~l~~I~ld~~~~~~L~~~ 644 (757)
T 3ln7_A 567 EVMVEDYLV--GTEYRFFVLGDETLAVLLRVPANVVGDSVHSVAELVAMKNDHPLRGDGSRTPLKKIALGEIEQLQLKEQ 644 (757)
T ss_dssp SEEEEECCC--SEEEEEEEETTEEEEEEEECCSEEEGGGCCCHHHHHHHHHTSTTEECSSSSSEECCCCCHHHHHHHHHH
T ss_pred cEEEEEcCC--CcEEEEEEECCEEEEEEEEecccccCCCcccHHHHHHhhcccccccccccCccccccccHHHHHHHHHc
Confidence 899999994 8999999999999985544333321000 0000000
Q ss_pred -cccccccccccCCcccccCCCCC-CCCCccccccCCCCcHHHHHHHHHHHHHHhCCcEeEEEEEEeC-------CCCCc
Q 037279 218 -LPFSRISNLIDNDKKVHDDGKKN-SQGDEVDLESVEMPSQSFLCELARGMREALGLNLFNFDVMRDA-------RDSNR 288 (327)
Q Consensus 218 -~~f~~~s~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~lA~~~~~~lGl~l~G~Dvi~~~-------~~g~~ 288 (327)
+..+++ +...+....+.++| +.|.. .....-...++++++|.++++++|+.++|||++.++ ..+ .
T Consensus 645 g~~~d~V---p~~Ge~v~L~~~~Nls~GG~--~~dvtd~i~p~~~~~a~~aa~~lGl~~~GvDli~~di~~p~~~~~~-~ 718 (757)
T 3ln7_A 645 GLTIDSI---PAKDQLVQLRANSNISTGGD--SIDMTDEMHESYKQLAVGITKAMGAAVCGVDLIIPDLKQPATPNLT-S 718 (757)
T ss_dssp TCCSSSC---CCSSCEEECCSSCCGGGTCC--EEECTTTSCHHHHHHHHHHHHHHTCSEEEEEEEESCSSSCCCSSTT-T
T ss_pred CCCcccc---CCCCCEEEeecccccccCcc--ceeccccCCHHHHHHHHHHHHHhCCCEEEEEEEecCccccccccCC-C
Confidence 001110 00000000000111 11111 111111235788999999999999999999999974 123 4
Q ss_pred EEEEEEcCCCCCCCC--------CChHHHHHHHH
Q 037279 289 YLIIDVNYFPGYAKM--------PGYESIMTDFF 314 (327)
Q Consensus 289 ~~VidVN~fPg~~g~--------~~~~~~l~~~~ 314 (327)
+.|||||..||+.+. .+++..|++++
T Consensus 719 ~~iiEvN~~P~~~~h~~p~~g~~~~v~~~ii~~l 752 (757)
T 3ln7_A 719 WGVIEANFNPMMMMHIFPYAGKSRRLTQNVIKML 752 (757)
T ss_dssp CEEEEEESSCCHHHHHSCSSSCCCCCHHHHHHHH
T ss_pred eEEEEEcCCcchhhhhccccCCCCchHHHHHHHh
Confidence 799999999997544 36777777765
No 19
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=99.88 E-value=1.4e-21 Score=187.52 Aligned_cols=213 Identities=18% Similarity=0.291 Sum_probs=144.9
Q ss_pred CccEEEEccCchhHH-HHHHHHHHhCCCCccc-CcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchh-
Q 037279 54 PFDCIVHKLYGPDWT-RQLQQFSSQNPNVPII-DSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLT- 130 (327)
Q Consensus 54 ~~Dvilhk~~~~~~~-~~l~~~~~~~p~v~Vi-d~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~- 130 (327)
.+|+++.=+...... ..++.++.. .|++.+ .++.++.+|+||..|.++|.+ .|||+|+++.+.+.+...
T Consensus 97 ~~D~vf~~l~G~~gEdg~~q~~le~-~gip~~G~~~~a~~~~~DK~~~k~~l~~-------~Gip~p~~~~~~~~~~~~~ 168 (357)
T 4fu0_A 97 KVDLVFPVLHGKNGEDGTLQGIFEL-AGIPVVGCDTLSSALCMDKDRAHKLVSL-------AGISVPKSVTFKRFNEEAA 168 (357)
T ss_dssp ECSEEEECCCSHHHHSSHHHHHHHH-TTCCBSSCCHHHHHHHHCHHHHHHHHHH-------TTCBCCCEEEEEGGGHHHH
T ss_pred CCCEEEECCcCccccCHHHHHHHHH-CCCcEECcCHHHHHHHhCHHHHHHHHHH-------CCCCCCCEEeecCCChHHH
Confidence 357776555432111 234455444 488877 689999999999999999998 699999999987644322
Q ss_pred -HHHhccCCCcEEEeeccCCCCccceeeEEEeChhhhcc-------CCCceEEEeccCCCCeEEEEEEECCEEEEEEecc
Q 037279 131 -SIEDLKLTFPVIAKPLVADGSVKSHQMYLIFDSQGLES-------MTAPFVLQEFVNHGGFIFKVYVAGMNVKCVKRKS 202 (327)
Q Consensus 131 -~~~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~~~~~l~~-------l~~p~vvQefI~h~g~d~KV~ViG~~v~~~~R~S 202 (327)
+.....++||+|+||..|. .|.+|.++.++++|.. ...++++|+|| .|+.+-|.|+|+....+....
T Consensus 169 ~~~~~~~lg~PvvVKP~~gg---~s~Gv~~v~~~~el~~~~~~a~~~~~~vlvE~~i--~G~e~~v~vl~~~~~~~~~v~ 243 (357)
T 4fu0_A 169 MKEIEANLTYPLFIKPVRAG---SSFGITKVIEKQELDAAIELAFEHDTEVIVEETI--NGFEVGCAVLGIDELIVGRVD 243 (357)
T ss_dssp HHHHHHHCCSSEEEEETTCS---SSTTCEEESSHHHHHHHHHHHTTTCSEEEEEECC--CSEEEEEEEEESSSEEECCCE
T ss_pred HHHHHHhcCCCEEEEECCCC---CCCceEEeccHHhHHHHHHHHhccCCeEEEEEec--CCEEEEEEEEecCCceEEEEE
Confidence 2235689999999999864 3689999999998853 35689999999 589999999988643211100
Q ss_pred CCCchhhhhhhcCCccccccccccccCCcccccCCCCCCCCCccccccCCCCc--HHHHHHHHHHHHHHhCCc-EeEEEE
Q 037279 203 LPDISEEKLKSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVEMPS--QSFLCELARGMREALGLN-LFNFDV 279 (327)
Q Consensus 203 ~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~lA~~~~~~lGl~-l~G~Dv 279 (327)
......+++.|.. ++.... + ....+..++. .++++++|.++.++||+. +++||+
T Consensus 244 -------~~~~~~~~~d~~~--k~~~~~---~-----------~~~~pa~l~~~~~~~i~~~A~~~~~aLg~~G~~~VDf 300 (357)
T 4fu0_A 244 -------EIELSSGFFDYTE--KYTLKS---S-----------KIYMPARIDAEAEKRIQEAAVTIYKALGCSGFSRVDM 300 (357)
T ss_dssp -------EEEECHHHHTSCS--BCSSCC---E-----------EEESSCSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred -------EEEcccccccccc--cccCCC---c-----------eEecCCCCCHHHHHHHHHHHHHHHHHhCCcceEEEEE
Confidence 0000001222321 221111 0 0111222332 467899999999999996 888999
Q ss_pred EEeCCCCCcEEEEEEcCCCCCCCCC
Q 037279 280 MRDARDSNRYLIIDVNYFPGYAKMP 304 (327)
Q Consensus 280 i~~~~~g~~~~VidVN~fPg~~g~~ 304 (327)
+.+. +|+ +||+|||..|||....
T Consensus 301 ~~~~-dg~-~~vlEvNt~PG~t~~S 323 (357)
T 4fu0_A 301 FYTP-SGE-IVFNEVNTIPGFTSHS 323 (357)
T ss_dssp EECT-TCC-EEEEEEESSCCCSTTC
T ss_pred EEeC-CCC-EEEEEEeCCCCCCccc
Confidence 9985 454 8999999999998643
No 20
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=99.87 E-value=3.6e-21 Score=183.24 Aligned_cols=255 Identities=15% Similarity=0.217 Sum_probs=168.0
Q ss_pred ceEEEEEeCCcc-cccc---chhHHHHHHHhCCCeEEEeCCCCCc---------------------------------c-
Q 037279 9 RFRIGYALAPKK-GQSL---IQPSLLTKASERGIDLIPIDPIKPL---------------------------------V- 50 (327)
Q Consensus 9 ~~~vG~~~~~~k-~~~~---~~~~l~~~~~~~gi~~~~ld~~~~l---------------------------------~- 50 (327)
+.+|++.+--.- +... .-..+++++++.|++++++|.+... .
T Consensus 3 ~~~v~vl~gG~s~E~~vs~~s~~~v~~al~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (343)
T 1e4e_A 3 RIKVAILFGGCSEEHDVSVKSAIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWENENCYSAVLSPDKKMHGLLVKK 82 (343)
T ss_dssp CEEEEEEEECSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEESCCCTTCCCTTCEEEEECSCTTTCEEEEEE
T ss_pred CcEEEEEeCCCCCCcchhHHHHHHHHHHhhhcCCEEEEEEEcCCCCEEecccchhhcccccccceecccccccccceeec
Confidence 456777765422 2222 2234678888999999998754210 0
Q ss_pred ----ccCCccEEEEccCchhH-HHHHHHHHHhCCCCccc-CcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEc
Q 037279 51 ----EQGPFDCIVHKLYGPDW-TRQLQQFSSQNPNVPII-DSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVS 124 (327)
Q Consensus 51 ----~q~~~Dvilhk~~~~~~-~~~l~~~~~~~p~v~Vi-d~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~ 124 (327)
....+|+++..+..... ...++..++. .|++++ +++.++..++||..+.++|.+ .|||+|++..+.
T Consensus 83 ~~~~~~~~~D~v~~~~~g~~ged~~~~~~le~-~gip~~g~~~~~~~~~~dK~~~k~~l~~-------~Gip~p~~~~~~ 154 (343)
T 1e4e_A 83 NHEYEINHVDVAFSALHGKSGEDGSIQGLFEL-SGIPFVGCDIQSSAICMDKSLTYIVAKN-------AGIATPAFWVIN 154 (343)
T ss_dssp TTEEEEEECSEEEECCCSTTTTSSHHHHHHHH-HTCCBSSCCHHHHHHHHSHHHHHHHHHH-------TTCBCCCEEEEC
T ss_pred ccccccccCCEEEEeCCCCCCcCHHHHHHHHH-cCCCccCCCHHHHHHHhCHHHHHHHHHH-------CCCCcCCEEEEe
Confidence 01135777766542210 1123444333 478887 579999999999999999998 699999999998
Q ss_pred CccchhHHHhccCCCcEEEeeccCCCCccceeeEEEeChhhhcc-------CCCceEEEeccCCCCeEEEEEEECCE---
Q 037279 125 EMKSLTSIEDLKLTFPVIAKPLVADGSVKSHQMYLIFDSQGLES-------MTAPFVLQEFVNHGGFIFKVYVAGMN--- 194 (327)
Q Consensus 125 ~~~~~~~~~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~~~~~l~~-------l~~p~vvQefI~h~g~d~KV~ViG~~--- 194 (327)
+.+.+.. ..++||+|+||..++| |.++.++.++++|.. ...++++||||+ |+++.|.|+++.
T Consensus 155 ~~~~~~~---~~~~~PvvvKP~~~~~---s~Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~I~--G~E~~v~vl~~~~~~ 226 (343)
T 1e4e_A 155 KDDRPVA---ATFTYPVFVKPARSGS---SFGVKKVNSADELDYAIESARQYDSKILIEQAVS--GCEVGCAVLGNSAAL 226 (343)
T ss_dssp TTCCCCG---GGSCSCEEEEESSCCT---TTTCEEECSGGGHHHHHHHHTTTCSSEEEEECCC--SEEEEEEEEEETTCC
T ss_pred chhhhhh---hccCCCEEEEeCCCCC---CCCEEEeCCHHHHHHHHHHHHhcCCcEEEEeCcC--CeEEEEEEEeCCCCe
Confidence 8665432 5689999999999754 578999999988753 357899999996 899999999875
Q ss_pred -EEEEEeccCCCchhhhhhhcCCccccccccccccCCcccccCCCCCCCCCccccccCCCCc--HHHHHHHHHHHHHHhC
Q 037279 195 -VKCVKRKSLPDISEEKLKSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVEMPS--QSFLCELARGMREALG 271 (327)
Q Consensus 195 -v~~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~lA~~~~~~lG 271 (327)
+....+.... .+++.|.. ++...+ .. |......+..++. .++++++|.++.++||
T Consensus 227 ~~~~~~ei~~~----------~~~~~~~~--k~~~~~---~~-------g~~~~~~p~~l~~~~~~~i~~~a~~~~~alg 284 (343)
T 1e4e_A 227 VVGEVDQIRLQ----------YGIFRIHQ--EVEPEK---GS-------ENAVITVPADLSAEERGRIQETVKKIYKTLG 284 (343)
T ss_dssp EECCCEEEEES----------SSCCCGGG--SSSGGG---CC-------SSEEECSSCSSCHHHHHHHHHHHHHHHHHTT
T ss_pred EEeeeEEEeeC----------CCccCHhh--cccccC---CC-------CCeeEEeCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 2111121100 12333332 332000 00 0000111222322 4588999999999999
Q ss_pred Cc-EeEEEEEEeCCCCCcEEEEEEcCCCCCCCC
Q 037279 272 LN-LFNFDVMRDARDSNRYLIIDVNYFPGYAKM 303 (327)
Q Consensus 272 l~-l~G~Dvi~~~~~g~~~~VidVN~fPg~~g~ 303 (327)
+. ++++|++.+. +|+ +||+|||..||+...
T Consensus 285 ~~G~~~vD~~~~~-~g~-~~viEiN~rpg~t~~ 315 (343)
T 1e4e_A 285 CRGLARVDMFLQD-NGR-IVLNEVNTLPGFTSY 315 (343)
T ss_dssp CEEEEEEEEEECT-TCC-EEEEEEESSCCCSTT
T ss_pred CceEEEEEEEEeC-CCC-EEEEEeeCCCCCCcc
Confidence 95 8999999975 454 899999999999764
No 21
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=99.86 E-value=3e-20 Score=178.67 Aligned_cols=255 Identities=15% Similarity=0.250 Sum_probs=170.7
Q ss_pred ceEEEEEeCC-ccccc--cc-hhHHHHHHHhCCCeEEEeCCCCCc-----------c-----------------------
Q 037279 9 RFRIGYALAP-KKGQS--LI-QPSLLTKASERGIDLIPIDPIKPL-----------V----------------------- 50 (327)
Q Consensus 9 ~~~vG~~~~~-~k~~~--~~-~~~l~~~~~~~gi~~~~ld~~~~l-----------~----------------------- 50 (327)
+.+|++++=- +-+.. +. -..+++++++.|+++++||+.+.- .
T Consensus 3 ~~~v~vl~GG~S~E~evSl~S~~~v~~al~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (364)
T 3i12_A 3 KLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPAHIALRPSAISLAQVPGK 82 (364)
T ss_dssp CEEEEEEEECSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEECSSSSBSSTTCTTTCCBCCCSCBEEECTTC
T ss_pred ccEEEEEeccCCCCccchHHHHHHHHHHHhhcCCeEEEEEECCCCCEEecccchhhhccccccccccccccccceecccc
Confidence 4567777743 22222 22 223667778889999999966421 0
Q ss_pred ------------ccCCccEEEEccCchhH-HHHHHHHHHhCCCCcccC-cHHHHHHhcCHHHHHHHHHhcccccCCCCcC
Q 037279 51 ------------EQGPFDCIVHKLYGPDW-TRQLQQFSSQNPNVPIID-SPDSIERLHNRISMLEVVTQLKLHFDNEKFG 116 (327)
Q Consensus 51 ------------~q~~~Dvilhk~~~~~~-~~~l~~~~~~~p~v~Vid-~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~ 116 (327)
....+|+++.-+..... ...++.++.. .|++++. ++.++..++||..+.++|.+ .|||
T Consensus 83 ~~~~~~~~~~~~~~~~~D~vf~~lhG~~gEdg~iq~~le~-~gip~~G~~~~a~~~~~DK~~~k~~l~~-------~Gip 154 (364)
T 3i12_A 83 HQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRV-ANLPFVGSDVLSSAACMDKDVAKRLLRD-------AGLN 154 (364)
T ss_dssp SSSCEEETTTCCBCCCCSEEEECCCSTTTTSSHHHHHHHH-TTCCBSSCCHHHHHHHHCHHHHHHHHHH-------TTCC
T ss_pred cccceeccccccccCCCCEEEEeCCCCCCcCHHHHHHHHH-cCCCccCCCHHHHHHHHCHHHHHHHHHH-------CCCC
Confidence 01247888877644211 1134555444 4898886 47999999999999999998 6999
Q ss_pred CCeEEEEcCcc----chhHHHhccCCCcEEEeeccCCCCccceeeEEEeChhhhcc-------CCCceEEEeccCCCCeE
Q 037279 117 VPNQVVVSEMK----SLTSIEDLKLTFPVIAKPLVADGSVKSHQMYLIFDSQGLES-------MTAPFVLQEFVNHGGFI 185 (327)
Q Consensus 117 ~P~~~~~~~~~----~~~~~~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~~~~~l~~-------l~~p~vvQefI~h~g~d 185 (327)
+|++.++.+.+ ++.+. ...++||+|+||..|+| |.++.++.++++|.. ...++++||||+ |++
T Consensus 155 ~p~~~~~~~~~~~~~~~~~~-~~~lg~PvvVKP~~ggs---s~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~I~--G~E 228 (364)
T 3i12_A 155 IAPFITLTRTNRHAFSFAEV-ESRLGLPLFVKPANQGS---SVGVSKVANEAQYQQAVALAFEFDHKVVVEQGIK--GRE 228 (364)
T ss_dssp BCCEEEEETTTGGGCCHHHH-HHHHCSSEEEEETTCCT---TTTCEEESSHHHHHHHHHHHHHHCSEEEEEECCC--SEE
T ss_pred CCCEEEEEccccchhhHHHH-HHhcCCCEEEEECCCCC---CcCeEEeCCHHHHHHHHHHHHhcCCcEEEEcCcC--CeE
Confidence 99999998865 44432 45689999999998753 578999999988753 256899999995 799
Q ss_pred EEEEEECCEE---EEEEeccCCCchhhhhhhcCCccccccccccccCCcccccCCCCCCCCCccccccCCCCc--HHHHH
Q 037279 186 FKVYVAGMNV---KCVKRKSLPDISEEKLKSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVEMPS--QSFLC 260 (327)
Q Consensus 186 ~KV~ViG~~v---~~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~ 260 (327)
+.|.|+|+.. ....+.... .+++.|+. ++..+. . . ....+..++. .++++
T Consensus 229 ~~v~vl~~~~~~~~~~~ei~~~----------~~~~~~~~--ky~~~~---~---------~-~~~~Pa~l~~~~~~~i~ 283 (364)
T 3i12_A 229 IECAVLGNDNPQASTCGEIVLN----------SEFYAYDT--KYIDDN---G---------A-QVVVPAQIPSEVNDKIR 283 (364)
T ss_dssp EEEEEEESSSCEEEEEEEEECC----------TTCC--TT--TTSGGG---G---------C-EEESSCSSCHHHHHHHH
T ss_pred EEEEEEeCCCceEeeeEEEecC----------CCccCHHH--cccCCC---c---------e-EEEeCCCCCHHHHHHHH
Confidence 9999998862 222221111 12333332 221100 0 0 0011222322 45789
Q ss_pred HHHHHHHHHhCCc-EeEEEEEEeCCCCCcEEEEEEcCCCCCCCCC
Q 037279 261 ELARGMREALGLN-LFNFDVMRDARDSNRYLIIDVNYFPGYAKMP 304 (327)
Q Consensus 261 ~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~VidVN~fPg~~g~~ 304 (327)
++|.++.++||+. ++++|++.+.+ | ++|++|||..||+....
T Consensus 284 ~~a~~~~~alg~~G~~~vD~~~~~~-g-~~~vlEiN~~Pg~t~~s 326 (364)
T 3i12_A 284 AIAIQAYQTLGCAGMARVDVFLTAD-N-EVVINEINTLPGFTNIS 326 (364)
T ss_dssp HHHHHHHHHTTCCEEEEEEEEECTT-C-CEEEEEEESSCCCSTTC
T ss_pred HHHHHHHHHhCCceEEEEEEEEecC-C-CEEEEEeeCCCCCCCCC
Confidence 9999999999995 88899999853 5 48999999999998653
No 22
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Probab=99.86 E-value=6.3e-21 Score=183.88 Aligned_cols=263 Identities=11% Similarity=0.119 Sum_probs=175.2
Q ss_pred CCceEEEEEeCCcc-ccccc---hhHHHHHHHhCCCeEEEeCCCCC--c-------------c-----------------
Q 037279 7 CQRFRIGYALAPKK-GQSLI---QPSLLTKASERGIDLIPIDPIKP--L-------------V----------------- 50 (327)
Q Consensus 7 ~~~~~vG~~~~~~k-~~~~~---~~~l~~~~~~~gi~~~~ld~~~~--l-------------~----------------- 50 (327)
.+..+|++++.-.- +.... -..++++++ |+++++||.+.. . .
T Consensus 18 ~~~~~v~vl~gG~s~E~~vSl~S~~~v~~al~--g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (367)
T 2pvp_A 18 GSHMEFCVLFGGASFEHEISIVSAIALKGVLK--DRIKYFIFLDENHHFYLIEESNMHSKYFAQIKEKKLPPLILTHNGL 95 (367)
T ss_dssp --CCCEEEEEECSSTTHHHHHHHHHHHHHHHG--GGEEEEEEECTTCCEEECCGGGCSHHHHHTGGGSCCCCBEEETTEE
T ss_pred ccCCEEEEEECCCCcchhhhHHHHHHHHHHhC--CCeEEEEEECCCCCEEeccccccchhhhccccccccccccccCcce
Confidence 44557888886543 22222 234666776 999999886542 1 1
Q ss_pred -c-----cC--CccEEEEccCchhH-HHHHHHHHHhCCCCccc-CcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeE
Q 037279 51 -E-----QG--PFDCIVHKLYGPDW-TRQLQQFSSQNPNVPII-DSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQ 120 (327)
Q Consensus 51 -~-----q~--~~Dvilhk~~~~~~-~~~l~~~~~~~p~v~Vi-d~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~ 120 (327)
. .. .+|+++.-+..... ...++..++. .|++++ +++.++..++||..|.++|.+ .|||+|++
T Consensus 96 ~~~~~~~~~~~~~D~v~~~lhg~~gedg~i~~~le~-~gip~~G~~~~a~~~~~DK~~~k~~l~~-------~Gip~p~~ 167 (367)
T 2pvp_A 96 LKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEF-YRIAFIGPRIEASVLSYNKYLTKLYAKD-------LGIKTLDY 167 (367)
T ss_dssp EEEETTEEEEEECCSEEECCCSTTTTSSHHHHHHHH-TTCCEESCCHHHHHHHHSHHHHHHHHHH-------HTCBCCCC
T ss_pred eccccccccccCCCEEEEcCCCCCccHHHHHHHHHH-cCCCccCCCHHHHHHHcCHHHHHHHHHH-------CCcCCCCE
Confidence 0 11 46777776653211 1134444433 489887 779999999999999999998 59999999
Q ss_pred EEEcCcc--chhHHHhccCCCcEEEeeccCCCCccceeeEEEeChhhhcc-------CCCceEEEeccCCCC-eE---EE
Q 037279 121 VVVSEMK--SLTSIEDLKLTFPVIAKPLVADGSVKSHQMYLIFDSQGLES-------MTAPFVLQEFVNHGG-FI---FK 187 (327)
Q Consensus 121 ~~~~~~~--~~~~~~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~~~~~l~~-------l~~p~vvQefI~h~g-~d---~K 187 (327)
.++.+.+ ++.+ ...++||+|+||..++| |.++.++.++++|.. ...++++||||+ | ++ +.
T Consensus 168 ~~~~~~~~~~~~~--~~~lg~PvvVKP~~g~s---s~Gv~~v~~~~el~~a~~~~~~~~~~vlVEe~I~--G~~E~svi~ 240 (367)
T 2pvp_A 168 VLLNEKNRANALD--LMNFNFPFIVKPSNAGS---SLGVNVVKEEKELIYALDSAFEYSKEVLIEPFIQ--GVKEYNLAG 240 (367)
T ss_dssp EEECTTTGGGHHH--HCCSCSCEEEEESSCCT---TTTCEEESSTTSHHHHHHHHTTTCSCEEEEECCT--TCEEEEEEE
T ss_pred EEEeCCchHHHHH--HhccCCCEEEEECCCCC---CCCEEEECCHHHHHHHHHHHHhcCCcEEEEeCCC--CCceeeEEE
Confidence 9998765 4433 45789999999999753 578999999988753 356899999995 7 89 88
Q ss_pred EEEECCEEEE-EEeccCCCchhhhhhhcCCccccccccccccCCcccccCCCCCCCCCccccccCCCCc--HHHHHHHHH
Q 037279 188 VYVAGMNVKC-VKRKSLPDISEEKLKSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVEMPS--QSFLCELAR 264 (327)
Q Consensus 188 V~ViG~~v~~-~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~lA~ 264 (327)
|.| ++++.+ ..+...+ .+++.|+. ++..+. . + ...+..++. .++++++|.
T Consensus 241 v~v-~g~~~~~~~ei~~~----------~~~~d~~~--ky~~g~---~--------~---~~~Pa~l~~~~~~~i~~~a~ 293 (367)
T 2pvp_A 241 CKI-KKDFCFSYIEEPNK----------QEFLDFKQ--KYLDFS---R--------N---KAPKASLSNALEEQLKENFK 293 (367)
T ss_dssp EEE-TTEEEEEEEEETTT----------TEEECCCC--SSCCSC---C--------C---SCCCCCCCHHHHHHHHHHHH
T ss_pred EEE-CCEEEEEEEEEecC----------CceEcccc--cccCCC---e--------e---EEecCCCCHHHHHHHHHHHH
Confidence 888 887543 2233211 12334432 332211 0 0 011222322 467899999
Q ss_pred HHHHHhCCc-EeEEEEEEeCCCCCcEEEEEEcCCCCCCC---CCChHHHHHHHHHH
Q 037279 265 GMREALGLN-LFNFDVMRDARDSNRYLIIDVNYFPGYAK---MPGYESIMTDFFLQ 316 (327)
Q Consensus 265 ~~~~~lGl~-l~G~Dvi~~~~~g~~~~VidVN~fPg~~g---~~~~~~~l~~~~~~ 316 (327)
++.++||+. ++++|++.+ +| .+||+|||..||+.+ +|+|.+++.+.+..
T Consensus 294 ~~~~aLg~~G~~~vDf~~~--~g-~~~vlEiN~rpg~t~~s~~p~~~~l~~~li~~ 346 (367)
T 2pvp_A 294 KLYSDLFDGAIIRCDFFVI--EN-EVYLNEINPIPGSLANYLFDDFKTTLENLAQS 346 (367)
T ss_dssp HHHTTTSTTCCEEEEEEEE--TT-EEEEEEEESSCGGGGGGGSSSHHHHHHHHHHH
T ss_pred HHHHHcCCCCEEEEEEEEE--CC-eEEEEEEeCCCCCCcccccCCHHHHHHHHHhC
Confidence 999999986 889999998 34 499999999999864 34555555544443
No 23
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=99.86 E-value=1.1e-20 Score=178.76 Aligned_cols=205 Identities=17% Similarity=0.171 Sum_probs=144.6
Q ss_pred CccEEEEccCchhHH-HHHHHHHHhCCCCcccC-cHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhH
Q 037279 54 PFDCIVHKLYGPDWT-RQLQQFSSQNPNVPIID-SPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTS 131 (327)
Q Consensus 54 ~~Dvilhk~~~~~~~-~~l~~~~~~~p~v~Vid-~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~ 131 (327)
.+|+++..+...... ..++..+.. .|++++. ++.++..++||..+.++|.+ .|||+|++..+.+.++.
T Consensus 76 ~~D~v~~~~hg~~gedg~i~~~le~-~gip~~g~~~~~~~~~~dK~~~k~~l~~-------~Gip~p~~~~~~~~~~~-- 145 (322)
T 2fb9_A 76 RYDVVFPLLHGRFGEDGTVQGFLEL-LGKPYVGAGVAASALCMDKDLSKRVLAQ-------AGVPVVPWVAVRKGEPP-- 145 (322)
T ss_dssp TCSEEEEECCSTTTTSSHHHHHHHH-HTCCBSSCCHHHHHHHHCHHHHHHHHHH-------TTCCCCCEEEEETTSCC--
T ss_pred CCCEEEEeCCCCCCccHHHHHHHHH-cCCCeeCcCHHHHHHHcCHHHHHHHHHH-------CCCCCCCEEEEECchhh--
Confidence 679999888542110 123333333 4788885 59999999999999999998 69999999999876531
Q ss_pred HHhccCCCcEEEeeccCCCCccceeeEEEeChhhhcc-------CCCceEEEeccCCCC-eEEEEEEECCE---EEEEEe
Q 037279 132 IEDLKLTFPVIAKPLVADGSVKSHQMYLIFDSQGLES-------MTAPFVLQEFVNHGG-FIFKVYVAGMN---VKCVKR 200 (327)
Q Consensus 132 ~~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~~~~~l~~-------l~~p~vvQefI~h~g-~d~KV~ViG~~---v~~~~R 200 (327)
. ..++||+|+||..|+| |.++.++.++++|.. ...++++||||+ | +++.|.|+|++ +....+
T Consensus 146 ~--~~~g~PvvvKP~~g~~---s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~--G~~E~~v~vl~~~~~~~~~~~e 218 (322)
T 2fb9_A 146 V--VPFDPPFFVKPANTGS---SVGISRVERFQDLEAALALAFRYDEKAVVEKALS--PVRELEVGVLGNVFGEASPVGE 218 (322)
T ss_dssp C--CCSCSCEEEEETTCCT---TTTCEEESSHHHHHHHHHHHTTTCSEEEEEECCS--SCEEEEEEEESSSSCEEEEEEE
T ss_pred h--hccCCCEEEEeCCCCC---CCCEEEECCHHHHHHHHHHHHhcCCeEEEEeCCC--CCeeEEEEEEeCCCceEeeeEE
Confidence 1 2689999999999753 579999999988753 356899999995 7 99999999985 332222
Q ss_pred ccCCCchhhhhhhcCCccccccccccccCCcccccCCCCCCCCCccccccCCCC--cHHHHHHHHHHHHHHhCC-cEeEE
Q 037279 201 KSLPDISEEKLKSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVEMP--SQSFLCELARGMREALGL-NLFNF 277 (327)
Q Consensus 201 ~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~lA~~~~~~lGl-~l~G~ 277 (327)
.... .+++.|.. ++..+. . ....+..++ ..++++++|.++.++||+ .++++
T Consensus 219 i~~~----------~~~~~~~~--k~~~g~---~-----------~~~~Pa~l~~~~~~~i~~~a~~~~~alg~~G~~~v 272 (322)
T 2fb9_A 219 VRYE----------APFYDYET--KYTPGR---A-----------ELLIPAPLDPGTQETVQELALKAYKVLGVRGMARV 272 (322)
T ss_dssp EEEE----------CCEEETTT--EEECCE---E-----------EEESSCCCCTTHHHHHHHHHHHHHHHHTCCSEEEE
T ss_pred EeeC----------CCccCHHH--cccCCC---e-----------EEEeCCCCCHHHHHHHHHHHHHHHHHhCCceEEEE
Confidence 1100 01223321 222110 0 001122222 256899999999999999 79999
Q ss_pred EEEEeCCCCCcEEEEEEcCCCCCCCCC
Q 037279 278 DVMRDARDSNRYLIIDVNYFPGYAKMP 304 (327)
Q Consensus 278 Dvi~~~~~g~~~~VidVN~fPg~~g~~ 304 (327)
|++.+ +| ++||+|||..||+....
T Consensus 273 D~~~~--~g-~~~vlEiN~rpg~t~~s 296 (322)
T 2fb9_A 273 DFFLA--EG-ELYLNELNTIPGFTPTS 296 (322)
T ss_dssp EEEEE--TT-EEEEEEEESSCCCSSSC
T ss_pred EEEEE--CC-cEEEEEEECCCCCCccc
Confidence 99998 35 49999999999998653
No 24
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=99.84 E-value=1.6e-20 Score=174.50 Aligned_cols=251 Identities=16% Similarity=0.181 Sum_probs=168.8
Q ss_pred EEEEEeCCcccc---ccchhHHHHHHHhCCCeEEEeCCCCCc-c-----------------------------ccCCccE
Q 037279 11 RIGYALAPKKGQ---SLIQPSLLTKASERGIDLIPIDPIKPL-V-----------------------------EQGPFDC 57 (327)
Q Consensus 11 ~vG~~~~~~k~~---~~~~~~l~~~~~~~gi~~~~ld~~~~l-~-----------------------------~q~~~Dv 57 (327)
+||+...+.-.+ ......++++++++|++++.+|++... . ....+|+
T Consensus 3 ~i~il~~~~~~~~~~~~s~~~l~~a~~~~G~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 82 (316)
T 1gsa_A 3 KLGIVMDPIANINIKKDSSFAMLLEAQRRGYELHYMEMGDLYLINGEARAHTRTLNVKQNYEEWFSFVGEQDLPLADLDV 82 (316)
T ss_dssp EEEEECSCGGGCCTTTCHHHHHHHHHHHTTCEEEEECGGGEEEETTEEEEEEEEEEECSCSSCCEEEEEEEEEEGGGSSE
T ss_pred eEEEEeCcHHhCCcCCChHHHHHHHHHHCCCEEEEEchhHeEEECCeEEEEEeeeEeccCcccceeccCccccccccCCE
Confidence 577777664222 233456889999999999999975310 0 0013688
Q ss_pred EEEccCch---hH--HHHHHHHHHhCCCCcccCcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHH
Q 037279 58 IVHKLYGP---DW--TRQLQQFSSQNPNVPIIDSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSI 132 (327)
Q Consensus 58 ilhk~~~~---~~--~~~l~~~~~~~p~v~Vid~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~ 132 (327)
++.+.... .+ ...+.+.++. .|++++|+++++..+.||+.+.++|. ++|+|.++.+.+++.+.
T Consensus 83 v~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~~~~~~~~~dK~~~~~~l~-----------~~P~t~~~~~~~~~~~~ 150 (316)
T 1gsa_A 83 ILMRKDPPFDTEFIYATYILERAEE-KGTLIVNKPQSLRDCNEKLFTAWFSD-----------LTPETLVTRNKAQLKAF 150 (316)
T ss_dssp EEECCCCCCCHHHHHHHHHHHHHHH-TTCEEESCHHHHHHCCTTGGGGGGTT-----------TSCCEEEESCHHHHHHH
T ss_pred EEEecCCCCchhhHHHHHHHHHHHH-cCCeEecCHHHHHhhhhHHHHHhhhh-----------cCCCeEEeCCHHHHHHH
Confidence 88877532 11 2223333333 47899999999999999988877542 89999999887766554
Q ss_pred HhccCCCcEEEeeccCCCCccceeeEEEe-Chhhhcc-------C-CCceEEEeccCCC-CeEEEEEEECCEEEE--EEe
Q 037279 133 EDLKLTFPVIAKPLVADGSVKSHQMYLIF-DSQGLES-------M-TAPFVLQEFVNHG-GFIFKVYVAGMNVKC--VKR 200 (327)
Q Consensus 133 ~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~-~~~~l~~-------l-~~p~vvQefI~h~-g~d~KV~ViG~~v~~--~~R 200 (327)
. ..++ |+|+||..|+ +|+++.++. +.+++.. . ..++++||||+.. +++++++++|+++++ +.|
T Consensus 151 ~-~~~~-p~vvKP~~g~---~g~Gv~~v~~~~~~l~~~~~~~~~~~~~~~lvqe~i~~~~~~~~~v~~~~g~~~~~~~~r 225 (316)
T 1gsa_A 151 W-EKHS-DIILKPLDGM---GGASIFRVKEGDPNLGVIAETLTEHGTRYCMAQNYLPAIKDGDKRVLVVDGEPVPYCLAR 225 (316)
T ss_dssp H-HHHS-SEEEECSSCC---TTTTCEEECTTCTTHHHHHHHHTTTTTSCEEEEECCGGGGGCEEEEEEETTEECSEEEEE
T ss_pred H-HHcC-CEEEEECCCC---CcccEEEecCChHHHHHHHHHHHhcCCceEEEecccCCCCCCCEEEEEECCEEeeeEEEE
Confidence 3 2346 9999999974 468899998 7766532 2 3689999999863 799999999999864 445
Q ss_pred ccCCCchhhhhhhcCCccccccccccccCCcccccCCCCCCCCCccccccCCCCcHHHHHHHHHHHHHH---hCCcEeEE
Q 037279 201 KSLPDISEEKLKSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVEMPSQSFLCELARGMREA---LGLNLFNF 277 (327)
Q Consensus 201 ~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~~~---lGl~l~G~ 277 (327)
.+..+ .+ . +|++.+ |. ..+.. ..++++++|.++.++ +|+.++|+
T Consensus 226 ~~~~~----~~-------~----~~~~~g-------------g~---~~~~~--~~~~~~~~a~~~~~~l~~~g~~~~~v 272 (316)
T 1gsa_A 226 IPQGG----ET-------R----GNLAAG-------------GR---GEPRP--LTESDWKIARQIGPTLKEKGLIFVGL 272 (316)
T ss_dssp ECCSS----CS-------C----CCGGGT-------------CE---EEEEE--CCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eCCCC----Cc-------e----eEEccC-------------Cc---cccCC--CCHHHHHHHHHHHHHHHhCCCcEEEE
Confidence 43211 11 0 122111 11 01112 234678999999977 59999999
Q ss_pred EEEEeCCCCCcEEEEEEcC-C-CCCCCC-----CChHHHHHHHHHHHH
Q 037279 278 DVMRDARDSNRYLIIDVNY-F-PGYAKM-----PGYESIMTDFFLQVL 318 (327)
Q Consensus 278 Dvi~~~~~g~~~~VidVN~-f-Pg~~g~-----~~~~~~l~~~~~~~~ 318 (327)
|++ | . ||+|||. + |||..+ .++.+.+.+++...+
T Consensus 273 D~~-----g-~-~~iEvN~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 313 (316)
T 1gsa_A 273 DII-----G-D-RLTEINVTSPTCIREIEAEFPVSITGMLMDAIEARL 313 (316)
T ss_dssp EEE-----T-T-EEEEEECSSCCCHHHHHHHSSCCHHHHHHHHHHHHT
T ss_pred Eec-----C-C-EEEEEcCCCCcchHHHHHhhCcCHHHHHHHHHHHHh
Confidence 998 3 2 6999999 5 587543 256677777776654
No 25
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=99.82 E-value=9.2e-20 Score=176.08 Aligned_cols=210 Identities=16% Similarity=0.203 Sum_probs=144.9
Q ss_pred CccEEEEccCchhH-HHHHHHHHHhCCCCcccCc-HHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccch--
Q 037279 54 PFDCIVHKLYGPDW-TRQLQQFSSQNPNVPIIDS-PDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSL-- 129 (327)
Q Consensus 54 ~~Dvilhk~~~~~~-~~~l~~~~~~~p~v~Vid~-~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~-- 129 (327)
.+|+++.-+..... ...++.++.. .|++++.| +.++..++||..|.++|.+ .|||+|+++++.+.+..
T Consensus 109 ~~D~vfp~lhG~~gEdg~iq~lle~-~gip~vG~~~~a~~~~~DK~~~k~~l~~-------~GIp~p~~~~~~~~~~~~~ 180 (373)
T 3lwb_A 109 SVDVVFPVLHGPYGEDGTIQGLLEL-AGVPYVGAGVLASAVGMDKEFTKKLLAA-------DGLPVGAYAVLRPPRSTLH 180 (373)
T ss_dssp TCSEEEECCEETTEECCHHHHHHHH-HTCCBSSSCHHHHHHHHBHHHHHHHHHH-------TTCCBCCEEEECTTCCCCC
T ss_pred CccEEEECCCCCCCccHHHHHHHHH-cCCCccCCcHHHHHHHcCHHHHHHHHHH-------cCcCCCCEEEEECcccchh
Confidence 47888877643210 1123444333 37998886 8999999999999999998 69999999999876541
Q ss_pred hHHHhccCCCcEEEeeccCCCCccceeeEEEeChhhhcc-------CCCceEEEeccCCCCeEEEEEEECCEEE-----E
Q 037279 130 TSIEDLKLTFPVIAKPLVADGSVKSHQMYLIFDSQGLES-------MTAPFVLQEFVNHGGFIFKVYVAGMNVK-----C 197 (327)
Q Consensus 130 ~~~~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~~~~~l~~-------l~~p~vvQefI~h~g~d~KV~ViG~~v~-----~ 197 (327)
... ...++||+|+||..|+| |.++.++.++++|.. .+.++++||||+ |+++.|.|+|+... .
T Consensus 181 ~~~-~~~lg~PvvVKP~~ggs---s~GV~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~--G~E~~v~vl~~~~~~~~~~~ 254 (373)
T 3lwb_A 181 RQE-CERLGLPVFVKPARGGS---SIGVSRVSSWDQLPAAVARARRHDPKVIVEAAIS--GRELECGVLEMPDGTLEAST 254 (373)
T ss_dssp HHH-HHHHCSCEEEEESBCST---TTTCEEECSGGGHHHHHHHHHTTCSSEEEEECCE--EEEEEEEEEECTTSCEEECC
T ss_pred HHH-HHhcCCCEEEEeCCCCC---CCCEEEeCCHHHHHHHHHHHHhcCCCEEEeCCCC--CeEEEEEEEECCCCceEEee
Confidence 121 45689999999999753 578999999988753 357899999997 89999999987521 1
Q ss_pred EEeccCCCchhhhhhhcCC----ccccccccccccCCcccccCCCCCCCCCccccccCCCC--cHHHHHHHHHHHHHHhC
Q 037279 198 VKRKSLPDISEEKLKSLKG----FLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVEMP--SQSFLCELARGMREALG 271 (327)
Q Consensus 198 ~~R~S~~~~~~~~~~~~~g----~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~lA~~~~~~lG 271 (327)
..+..... ..+ ++.|.. ++..+. . ....+..++ ..++++++|.++.++||
T Consensus 255 ~~ei~~~~--------~~~~~~~~~d~~~--ky~~~~---~-----------~~~~Pa~l~~~~~~~i~~~a~~~~~aLg 310 (373)
T 3lwb_A 255 LGEIRVAG--------VRGREDSFYDFAT--KYLDDA---A-----------ELDVPAKVDDQVAEAIRQLAIRAFAAID 310 (373)
T ss_dssp CEEEECCS--------TTCSEESSSCHHH--HHTCTT---C-----------EEESSCCCCHHHHHHHHHHHHHHHHHTT
T ss_pred eeEEEccC--------CCCccccccchhh--cccCCC---c-----------eEEeCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 11111000 011 344432 332111 0 001122232 24688999999999999
Q ss_pred C-cEeEEEEEEeCCCCCcEEEEEEcCCCCCCCCC
Q 037279 272 L-NLFNFDVMRDARDSNRYLIIDVNYFPGYAKMP 304 (327)
Q Consensus 272 l-~l~G~Dvi~~~~~g~~~~VidVN~fPg~~g~~ 304 (327)
+ .++++|++.+. +| . ||+|||..|||....
T Consensus 311 ~~G~~~vDf~~~~-dg-~-~vlEIN~~PG~t~~S 341 (373)
T 3lwb_A 311 CRGLARVDFFLTD-DG-P-VINEINTMPGFTTIS 341 (373)
T ss_dssp CCSEEEEEEEEET-TE-E-EEEEEESSCCCSTTS
T ss_pred CccEEEEEEEEEC-CC-C-EEEEecCCCCCCccc
Confidence 9 49999999986 34 4 899999999998644
No 26
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=99.79 E-value=2.6e-17 Score=158.25 Aligned_cols=225 Identities=19% Similarity=0.247 Sum_probs=152.9
Q ss_pred hhHHHHHHHhCCCeEEEeCCCCCc--c---cc----------------CCccEEEEccCchhHHHHHHHHHHhCCCCccc
Q 037279 26 QPSLLTKASERGIDLIPIDPIKPL--V---EQ----------------GPFDCIVHKLYGPDWTRQLQQFSSQNPNVPII 84 (327)
Q Consensus 26 ~~~l~~~~~~~gi~~~~ld~~~~l--~---~q----------------~~~Dvilhk~~~~~~~~~l~~~~~~~p~v~Vi 84 (327)
...++.+++++|++++.+|++... . +. ..+|+++.-..+.. . .+.+++++ .|+++.
T Consensus 13 g~~~~~a~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~d~v~~~~e~~~-~-~~~~~l~~-~gi~~~ 89 (380)
T 3ax6_A 13 GKMMTLEAKKMGFYVIVLDPTPRSPAGQVADEQIVAGFFDSERIEDLVKGSDVTTYDLEHID-V-QTLKKLYN-EGYKIH 89 (380)
T ss_dssp HHHHHHHHHHTTCEEEEEESSTTCTTGGGSSEEEECCTTCHHHHHHHHHTCSEEEESCSCSC-H-HHHHHHHH-TTCEES
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCCchhhhCceEEECCCCCHHHHHHHHhcCCEEEecccCCC-H-HHHHHHHH-CCCeEC
Confidence 456788899999999999975321 1 10 13567665432221 2 22233333 378888
Q ss_pred CcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEEEeeccCCCCccceeeEEEeChh
Q 037279 85 DSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKPLVADGSVKSHQMYLIFDSQ 164 (327)
Q Consensus 85 d~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~~~~ 164 (327)
++++++..+.||..+.++|.+ .|||+|++..+.+.++ ....++||+|+||..++ -+|.++.++.+.+
T Consensus 90 ~~~~~~~~~~dK~~~~~~l~~-------~gip~p~~~~~~~~~~----~~~~~~~P~vvKp~~~~--y~g~Gv~~v~~~~ 156 (380)
T 3ax6_A 90 PSPYTLEIIQDKFVQKEFLKK-------NGIPVPEYKLVKDLES----DVREFGFPVVQKARKGG--YDGRGVFIIKNEK 156 (380)
T ss_dssp SCHHHHHHHHSHHHHHHHHHH-------TTCCCCCEEECSSHHH----HHHTTCSSEEEEESCCC-------EEEECSGG
T ss_pred CCHHHHHHhcCHHHHHHHHHH-------cCCCCCCeEEeCCHHH----HHHhcCCCEEEEecCCC--CCCCCeEEECCHH
Confidence 999999999999999999998 6999999999887554 23468999999999874 1358999999999
Q ss_pred hhccC-CCceEEEeccCCCCeEEEEEEECC---EEEEEE-eccCCCchhhhhhhcCCccccccccccccCCcccccCCCC
Q 037279 165 GLESM-TAPFVLQEFVNHGGFIFKVYVAGM---NVKCVK-RKSLPDISEEKLKSLKGFLPFSRISNLIDNDKKVHDDGKK 239 (327)
Q Consensus 165 ~l~~l-~~p~vvQefI~h~g~d~KV~ViG~---~v~~~~-R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~ 239 (327)
++... ..++++||||+. |+++.|.++++ ++.... ....-. ..+ +....
T Consensus 157 el~~~~~~~~lvEe~i~~-g~e~sv~~~~~~~G~~~~~~~~~~~~~-~~~------~~~~~------------------- 209 (380)
T 3ax6_A 157 DLENAIKGETYLEEFVEI-EKELAVMVARNEKGEIACYPVVEMYFD-EDA------NICDT------------------- 209 (380)
T ss_dssp GGGGCCCSSEEEEECCCE-EEEEEEEEEECSSCCEEEEEEEEEC---------------CE-------------------
T ss_pred HHHHHhcCCEEEEeccCC-CeeEEEEEEECCCCCEEEECCeeeeec-ccC------CeeEE-------------------
Confidence 98754 378999999964 79999999975 443321 111100 000 00000
Q ss_pred CCCCCccccccCCCC--cHHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCcEEEEEEcCCCCCCC
Q 037279 240 NSQGDEVDLESVEMP--SQSFLCELARGMREALGLN-LFNFDVMRDARDSNRYLIIDVNYFPGYAK 302 (327)
Q Consensus 240 ~~~~~~~~~~~~~~~--~~~~l~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~VidVN~fPg~~g 302 (327)
...+..++ ..++++++|.++.++||+. ++++|++.+. +|+ ++|+|||.-||..+
T Consensus 210 -------~~~p~~l~~~~~~~~~~~a~~~~~~lg~~G~~~vd~~~~~-~g~-~~viEiN~R~~~~~ 266 (380)
T 3ax6_A 210 -------VIAPARIEEKYSKIAREIATSVVEALEGVGIFGIEMFLTK-QGE-ILVNEIAPRPHNSG 266 (380)
T ss_dssp -------EEESCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEET-TSC-EEEEEEESSCCGGG
T ss_pred -------EECCCCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEEeC-CCc-EEEEEecCCCCCCc
Confidence 00111122 1357899999999999995 8899999985 353 89999999999754
No 27
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=99.77 E-value=4.5e-17 Score=157.42 Aligned_cols=237 Identities=16% Similarity=0.177 Sum_probs=161.9
Q ss_pred CceEEEEEeCCccccccchhHHHHHHHhCCCeEEEeCCCCCccc-c--------------------CCccEEEEccCchh
Q 037279 8 QRFRIGYALAPKKGQSLIQPSLLTKASERGIDLIPIDPIKPLVE-Q--------------------GPFDCIVHKLYGPD 66 (327)
Q Consensus 8 ~~~~vG~~~~~~k~~~~~~~~l~~~~~~~gi~~~~ld~~~~l~~-q--------------------~~~Dvilhk~~~~~ 66 (327)
...+||++-.-. .-..+++++++.|++++.+|.+..-.. + ...|++..-....
T Consensus 13 ~~k~IlIlG~G~-----~g~~la~aa~~~G~~vi~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~dvI~~~~e~~- 86 (389)
T 3q2o_A 13 PGKTIGIIGGGQ-----LGRMMALAAKEMGYKIAVLDPTKNSPCAQVADIEIVASYDDLKAIQHLAEISDVVTYEFENI- 86 (389)
T ss_dssp TTSEEEEECCSH-----HHHHHHHHHHHTTCEEEEEESSTTCTTTTTCSEEEECCTTCHHHHHHHHHTCSEEEESCCCC-
T ss_pred CCCEEEEECCCH-----HHHHHHHHHHHcCCEEEEEeCCCCCchHHhCCceEecCcCCHHHHHHHHHhCCEeeeccccc-
Confidence 445788876554 355688999999999999997632110 0 0234443222111
Q ss_pred HHHHHHHHHHhCCCCcccCcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEEEeec
Q 037279 67 WTRQLQQFSSQNPNVPIIDSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKPL 146 (327)
Q Consensus 67 ~~~~l~~~~~~~p~v~Vid~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~VvKP~ 146 (327)
....++ .+.++ ++ +.+++++++.+.||..+.++|.+ .|||+|++..+.+.+++.+. ...++||+|+||.
T Consensus 87 ~~~~~~-~l~~~-g~-~~~~~~~~~~~~dK~~~k~~l~~-------~Gip~p~~~~~~~~~~~~~~-~~~~g~P~vvKp~ 155 (389)
T 3q2o_A 87 DYRCLQ-WLEKH-AY-LPQGSQLLSKTQNRFTEKNAIEK-------AGLPVATYRLVQNQEQLTEA-IAELSYPSVLKTT 155 (389)
T ss_dssp CHHHHH-HHHHH-SC-CTTCSHHHHHTTSHHHHHHHHHH-------TTCCCCCEEEESSHHHHHHH-HHHHCSSEEEEES
T ss_pred cHHHHH-HHHhh-Cc-cCCCHHHHHHhcCHHHHHHHHHH-------CCCCCCCeEEECCHHHHHHH-HHhcCCCEEEEeC
Confidence 112222 23332 34 67899999999999999999998 69999999999987776553 3568999999999
Q ss_pred cCCCCccceeeEEEeChhhhccC-----CCceEEEeccCCCCeEEEEEEECC---EEEE--EEeccCCCchhhhhhhcCC
Q 037279 147 VADGSVKSHQMYLIFDSQGLESM-----TAPFVLQEFVNHGGFIFKVYVAGM---NVKC--VKRKSLPDISEEKLKSLKG 216 (327)
Q Consensus 147 ~~~Gs~~sh~m~lv~~~~~l~~l-----~~p~vvQefI~h~g~d~KV~ViG~---~v~~--~~R~S~~~~~~~~~~~~~g 216 (327)
.+.+ .++++.++.++++|... ..++++||||+ +++++.|.++++ ++.+ ..+. ... .|
T Consensus 156 ~~~~--~g~Gv~~v~~~~el~~~~~~~~~~~~lvEe~i~-g~~E~~v~~~~~~~G~~~~~~~~e~----~~~------~g 222 (389)
T 3q2o_A 156 TGGY--DGKGQVVLRSEADVDEARKLANAAECILEKWVP-FEKEVSVIVIRSVSGETKVFPVAEN----IHV------NN 222 (389)
T ss_dssp SCCS--SSCCEEEESSGGGHHHHHHHHHHSCEEEEECCC-CSEEEEEEEEECTTCCEEECCCEEE----EEE------TT
T ss_pred CCCC--CCCCeEEECCHHHHHHHHHhcCCCCEEEEeccc-CceEEEEEEEEcCCCCEEEecCeee----EEc------CC
Confidence 8642 36899999999988643 46899999997 359999999965 3322 1110 000 01
Q ss_pred ccccccccccccCCcccccCCCCCCCCCccccccCCCC--cHHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCcEEEEE
Q 037279 217 FLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVEMP--SQSFLCELARGMREALGLN-LFNFDVMRDARDSNRYLIID 293 (327)
Q Consensus 217 ~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~Vid 293 (327)
.+. .+ ..+..++ ..++++++|.++.++||+. ++++|++.+. +| ++||+|
T Consensus 223 ~~~---~~-----------------------~~p~~l~~~~~~~~~~~a~~~~~~lg~~G~~~ve~~~~~-dg-~~~viE 274 (389)
T 3q2o_A 223 ILH---ES-----------------------IVPARITEELSQKAIAYAKVLADELELVGTLAVEMFATA-DG-EIYINE 274 (389)
T ss_dssp EEE---EE-----------------------EESCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECT-TS-CEEEEE
T ss_pred ceE---EE-----------------------ECCCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeC-CC-CEEEEE
Confidence 110 00 0011122 2457899999999999997 8899999975 35 389999
Q ss_pred EcCCCCCCC
Q 037279 294 VNYFPGYAK 302 (327)
Q Consensus 294 VN~fPg~~g 302 (327)
||.-||-.+
T Consensus 275 iNpR~~~s~ 283 (389)
T 3q2o_A 275 LAPRPHNSG 283 (389)
T ss_dssp EESSCCGGG
T ss_pred eeCCCCCch
Confidence 999998664
No 28
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=99.76 E-value=2.5e-17 Score=160.44 Aligned_cols=244 Identities=11% Similarity=0.125 Sum_probs=161.1
Q ss_pred CCceEEEEEeCCccccccchhHHHHHHHhCCCeEEEeCCCC--CccccC-CccEEEEccCchhH----------------
Q 037279 7 CQRFRIGYALAPKKGQSLIQPSLLTKASERGIDLIPIDPIK--PLVEQG-PFDCIVHKLYGPDW---------------- 67 (327)
Q Consensus 7 ~~~~~vG~~~~~~k~~~~~~~~l~~~~~~~gi~~~~ld~~~--~l~~q~-~~Dvilhk~~~~~~---------------- 67 (327)
.+..+||++-.-. .-..++.++++.|++++.+| .. +...-. .+..+.....+...
T Consensus 22 m~~~~I~ilGgG~-----lg~~l~~aa~~lG~~v~~~d-~~~~p~~~~ad~~~~~~~~~~d~~~l~~~a~~~d~i~~e~e 95 (403)
T 3k5i_A 22 WNSRKVGVLGGGQ-----LGRMLVESANRLNIQVNVLD-ADNSPAKQISAHDGHVTGSFKEREAVRQLAKTCDVVTAEIE 95 (403)
T ss_dssp CSCCEEEEECCSH-----HHHHHHHHHHHHTCEEEEEE-STTCTTGGGCCSSCCEESCTTCHHHHHHHHTTCSEEEESSS
T ss_pred CCCCEEEEECCCH-----HHHHHHHHHHHCCCEEEEEE-CCCCcHHHhccccceeecCCCCHHHHHHHHHhCCEEEECCC
Confidence 3456777776542 34568899999999999999 42 111100 01122222222110
Q ss_pred ---HHHHHHHHHhCCCCcccCcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEc--CccchhHHHhccCCCcEE
Q 037279 68 ---TRQLQQFSSQNPNVPIIDSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVS--EMKSLTSIEDLKLTFPVI 142 (327)
Q Consensus 68 ---~~~l~~~~~~~p~v~Vid~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~--~~~~~~~~~~~~l~~P~V 142 (327)
...+ +.+.+ ++++..++++++.+.||..+.++|.+ .|||+|++..+. +.+++.+. ...++||+|
T Consensus 96 ~~~~~~l-~~l~~--g~~v~p~~~a~~~~~dK~~~k~~l~~-------~Gip~p~~~~~~~~~~~~~~~~-~~~~g~P~V 164 (403)
T 3k5i_A 96 HVDTYAL-EEVAS--EVKIEPSWQAIRTIQNKFNQKEHLRK-------YGIPMAEHRELVENTPAELAKV-GEQLGYPLM 164 (403)
T ss_dssp CSCHHHH-HHHTT--TSEESSCHHHHHHHTSHHHHHHHHHT-------TTCCBCCEEEESSCCHHHHHHH-HHHHCSSEE
T ss_pred CCCHHHH-HHHHc--CCccCcCHHHHHHhcCHHHHHHHHHH-------CCcCCCCEEEEcCCCHHHHHHH-HHHhCCCEE
Confidence 1112 22333 78899999999999999999999998 699999999998 76666543 356899999
Q ss_pred EeeccCCCCccceeeEEEeChhhhccC-----CCceEEEeccCCCCeEEEEEEECCEEEEEEeccCCCchhhhhhhcCCc
Q 037279 143 AKPLVADGSVKSHQMYLIFDSQGLESM-----TAPFVLQEFVNHGGFIFKVYVAGMNVKCVKRKSLPDISEEKLKSLKGF 217 (327)
Q Consensus 143 vKP~~~~Gs~~sh~m~lv~~~~~l~~l-----~~p~vvQefI~h~g~d~KV~ViG~~v~~~~R~S~~~~~~~~~~~~~g~ 217 (327)
+||..++ + +|+++.++.+++++... ..++++||||+ .|+.+.|.++++.--+.. .|.. +.....+.
T Consensus 165 vKp~~gg-~-~g~Gv~~v~~~~el~~a~~~~~~~~~lvEe~i~-~~~E~sv~v~~~~~g~~~---~p~~---~~~~~~g~ 235 (403)
T 3k5i_A 165 LKSKTMA-Y-DGRGNFRVNSQDDIPEALEALKDRPLYAEKWAY-FKMELAVIVVKTKDEVLS---YPTV---ETVQEDSI 235 (403)
T ss_dssp EEESSSC-C-TTTTEEEECSTTSHHHHHHHTTTSCEEEEECCC-EEEEEEEEEEECSSCEEE---CCCE---EEEEETTE
T ss_pred EEeCCCC-c-CCCCEEEECCHHHHHHHHHhcCCCcEEEecCCC-CCeEEEEEEEEcCCCEEE---eCCe---eeEEeCCE
Confidence 9998763 1 46799999999887532 46899999996 369999999976321000 1110 00000011
Q ss_pred cccccccccccCCcccccCCCCCCCCCccccccCC-CC--cHHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCcEEEEE
Q 037279 218 LPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVE-MP--SQSFLCELARGMREALGLN-LFNFDVMRDARDSNRYLIID 293 (327)
Q Consensus 218 ~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~l~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~Vid 293 (327)
+.. ...+.. ++ ..++++++|.++.++||+. ++++|++.+.+ | +++|+|
T Consensus 236 ~~~--------------------------~~~Pa~~l~~~~~~~~~~~a~~i~~~Lg~~G~~~ve~~~~~d-g-~~~v~E 287 (403)
T 3k5i_A 236 CKL--------------------------VYAPARNVSDAINQKAQELARKAVAAFDGKGVFGVEMFLLED-D-SIMLCE 287 (403)
T ss_dssp EEE--------------------------EEESCSSCCHHHHHHHHHHHHHHHHTSCCSEEEEEEEEEETT-S-CEEEEE
T ss_pred EEE--------------------------EEeCCCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeCC-C-cEEEEE
Confidence 000 001111 22 2457889999999999996 88999999853 5 399999
Q ss_pred EcCCCCCCCCC
Q 037279 294 VNYFPGYAKMP 304 (327)
Q Consensus 294 VN~fPg~~g~~ 304 (327)
||.-||-.|..
T Consensus 288 iNpR~~~sg~~ 298 (403)
T 3k5i_A 288 IASRIHNSGHY 298 (403)
T ss_dssp EESSCCGGGTT
T ss_pred eecCCCCCCce
Confidence 99999977443
No 29
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=99.75 E-value=1.4e-16 Score=153.59 Aligned_cols=238 Identities=15% Similarity=0.173 Sum_probs=160.5
Q ss_pred CceEEEEEeCCccccccchhHHHHHHHhCCCeEEEeCCCCCcc-cc--------------------CCccEEEEccCchh
Q 037279 8 QRFRIGYALAPKKGQSLIQPSLLTKASERGIDLIPIDPIKPLV-EQ--------------------GPFDCIVHKLYGPD 66 (327)
Q Consensus 8 ~~~~vG~~~~~~k~~~~~~~~l~~~~~~~gi~~~~ld~~~~l~-~q--------------------~~~Dvilhk~~~~~ 66 (327)
...+||++-.-- .-..++.+|++.|++++.+|+...-. .+ ...|+|..-+....
T Consensus 11 ~~~~IlIlG~G~-----lg~~la~aa~~lG~~viv~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~~~~~dvi~~~~E~~~ 85 (377)
T 3orq_A 11 FGATIGIIGGGQ-----LGKMMAQSAQKMGYKVVVLDPSEDCPCRYVAHEFIQAKYDDEKALNQLGQKCDVITYEFENIS 85 (377)
T ss_dssp TTCEEEEECCSH-----HHHHHHHHHHHTTCEEEEEESCTTCTTGGGSSEEEECCTTCHHHHHHHHHHCSEEEESSTTSC
T ss_pred CCCEEEEECCCH-----HHHHHHHHHHHCCCEEEEEECCCCChhhhhCCEEEECCCCCHHHHHHHHHhCCcceecccccC
Confidence 456777776542 24467899999999999999763210 00 02465544332111
Q ss_pred HHHHHHHHHHhCCCCcccCcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEEEeec
Q 037279 67 WTRQLQQFSSQNPNVPIIDSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKPL 146 (327)
Q Consensus 67 ~~~~l~~~~~~~p~v~Vid~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~VvKP~ 146 (327)
...+.+..+. . .+..++++++.+.||..+.++|.+ .|||+|++..+.+.+++.+. ...++||+|+||.
T Consensus 86 -~~~l~~l~~~-~--~v~p~~~~~~~~~dK~~~k~~l~~-------~Gip~p~~~~~~~~~~~~~~-~~~~g~P~vvKp~ 153 (377)
T 3orq_A 86 -AQQLKLLCEK-Y--NIPQGYQAIQLLQDRLTEKETLKS-------AGTKVVPFISVKESTDIDKA-IETLGYPFIVKTR 153 (377)
T ss_dssp -HHHHHHHHHH-S--CCTTTTHHHHHHHSHHHHHHHHHH-------TTCCBCCEEEECSSTHHHHH-HHHTCSSEEEEES
T ss_pred -HHHHHHHhhh-c--CCCCCHHHHHHhcCHHHHHHHHHH-------CCCCCCCeEEECCHHHHHHH-HHHcCCCEEEEeC
Confidence 2223333222 2 355889999999999999999988 69999999999988877654 4568999999999
Q ss_pred cCCCCccceeeEEEeChhhhccC-----CCceEEEeccCCCC-eEEEEEEE-C--CEEEEEEeccCCCchhhhhhhcCCc
Q 037279 147 VADGSVKSHQMYLIFDSQGLESM-----TAPFVLQEFVNHGG-FIFKVYVA-G--MNVKCVKRKSLPDISEEKLKSLKGF 217 (327)
Q Consensus 147 ~~~Gs~~sh~m~lv~~~~~l~~l-----~~p~vvQefI~h~g-~d~KV~Vi-G--~~v~~~~R~S~~~~~~~~~~~~~g~ 217 (327)
.|+ + +|+++.++.+++++... ..++++||||+ | +.+.|.++ + +++.+. |-. +.....+.
T Consensus 154 ~gg-~-~g~Gv~~v~~~~el~~a~~~~~~~~~ivEe~i~--g~~E~sv~~~~~~~g~~~~~-----~~~---e~~~~~g~ 221 (377)
T 3orq_A 154 FGG-Y-DGKGQVLINNEKDLQEGFKLIETSECVAEKYLN--IKKEVSLTVTRGNNNQITFF-----PLQ---ENEHRNQI 221 (377)
T ss_dssp SSC-C-TTTTEEEECSTTSHHHHHHHHTTSCEEEEECCC--EEEEEEEEEEECGGGCEEEC-----CCE---EEEEETTE
T ss_pred CCC-C-CCCCeEEECCHHHHHHHHHhcCCCcEEEEccCC--CCEEEEEEEEEeCCCCEEEE-----CCE---eEEEECCE
Confidence 863 2 56899999999887532 47899999996 5 89999999 3 233221 100 00000011
Q ss_pred cccccccccccCCcccccCCCCCCCCCccccccCCCCcHHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCcEEEEEEcC
Q 037279 218 LPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVEMPSQSFLCELARGMREALGLN-LFNFDVMRDARDSNRYLIIDVNY 296 (327)
Q Consensus 218 ~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~VidVN~ 296 (327)
+.. . ..+..++..++++++|.++.++||+. ++++|++.+.+ | +++|+|||.
T Consensus 222 ~~~----~----------------------~~Pa~l~~~~~~~~~a~~i~~~lg~~G~~~ve~~~~~~-g-~~~v~Einp 273 (377)
T 3orq_A 222 LFK----T----------------------IVPARIDKTAEAKEQVNKIIQSIHFIGTFTVEFFIDSN-N-QLYVNEIAP 273 (377)
T ss_dssp EEE----E----------------------EESCSSCCHHHHHHHHHHHHTTSCCCEEEEEEEEEETT-C-CEEEEEEES
T ss_pred EEE----E----------------------ECCCCCCHHHHHHHHHHHHHHHCCCeEEEEEEEEEeCC-C-cEEEEEeeC
Confidence 000 0 01112222678999999999999997 89999999853 4 489999999
Q ss_pred CCCCCC
Q 037279 297 FPGYAK 302 (327)
Q Consensus 297 fPg~~g 302 (327)
-|+-.|
T Consensus 274 R~~~sg 279 (377)
T 3orq_A 274 RPHNSG 279 (377)
T ss_dssp SCCGGG
T ss_pred CcCCCC
Confidence 999433
No 30
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=99.75 E-value=3.7e-17 Score=158.10 Aligned_cols=246 Identities=17% Similarity=0.139 Sum_probs=160.0
Q ss_pred cCCceEEEEEeCCccccccchhHHHHHHHhCCCeEEEeCCCC-C--------------cc---------ccCCccEEEEc
Q 037279 6 QCQRFRIGYALAPKKGQSLIQPSLLTKASERGIDLIPIDPIK-P--------------LV---------EQGPFDCIVHK 61 (327)
Q Consensus 6 ~~~~~~vG~~~~~~k~~~~~~~~l~~~~~~~gi~~~~ld~~~-~--------------l~---------~q~~~Dvilhk 61 (327)
|.+..+|+++-... ...+++++|++.|++++.+|... . +. ....+|+|+.-
T Consensus 4 m~~~~~ilI~g~g~-----~~~~~~~a~~~~G~~~v~v~~~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~~d~v~~~ 78 (403)
T 4dim_A 4 MYDNKRLLILGAGR-----GQLGLYKAAKELGIHTIAGTMPNAHKPCLNLADEISYMDISNPDEVEQKVKDLNLDGAATC 78 (403)
T ss_dssp --CCCEEEEECCCG-----GGHHHHHHHHHHTCEEEEEECSSCCHHHHHHCSEEEECCTTCHHHHHHHTTTSCCSEEECC
T ss_pred ccCCCEEEEECCcH-----hHHHHHHHHHHCCCEEEEEcCCCCCCcchhhCCeEEEecCCCHHHHHHHHHHcCCCEEEeC
Confidence 33445666665443 24468899999999999997532 1 00 11257888864
Q ss_pred cCchhHHHHHHHHHHhCCCCcccCcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcE
Q 037279 62 LYGPDWTRQLQQFSSQNPNVPIIDSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPV 141 (327)
Q Consensus 62 ~~~~~~~~~l~~~~~~~p~v~Vid~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~ 141 (327)
..+.. ...+.+...+ -|+ +.+++++++.+.||..+.++|.+ .|||+|++..+.+.+++.+. ...++||+
T Consensus 79 ~~~~~-~~~~a~~~~~-~gl-~g~~~~~~~~~~dK~~~~~~l~~-------~gip~p~~~~~~~~~~~~~~-~~~~g~P~ 147 (403)
T 4dim_A 79 CLDTG-IVSLARICDK-ENL-VGLNEEAAIMCGDKYKMKEAFKK-------YNVNTARHFVVRNENELKNA-LENLKLPV 147 (403)
T ss_dssp SCSTT-HHHHHHHHHH-HTC-SSCCHHHHHHHHCHHHHHHHHHH-------HTCCCCCEECCCSHHHHHHH-HHTSCSSE
T ss_pred Ccchh-HHHHHHHHHH-cCc-CCCCHHHHHHHhCHHHHHHHHHH-------cCCCCCCEEEeCCHHHHHHH-HhcCCCCE
Confidence 32222 2233333222 256 47899999999999999999998 59999999998887766553 46789999
Q ss_pred EEeeccCCCCccceeeEEEeChhhhccC---------CCceEEEeccCCCCeEEEEEEECCEEEEEEeccCCCchhhhhh
Q 037279 142 IAKPLVADGSVKSHQMYLIFDSQGLESM---------TAPFVLQEFVNHGGFIFKVYVAGMNVKCVKRKSLPDISEEKLK 212 (327)
Q Consensus 142 VvKP~~~~Gs~~sh~m~lv~~~~~l~~l---------~~p~vvQefI~h~g~d~KV~ViG~~v~~~~R~S~~~~~~~~~~ 212 (327)
|+||..|. +|+++.++.++++|... ..++++||||+.....+.+++.++++....... ++..
T Consensus 148 vvKp~~g~---gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~lvEe~i~g~e~sv~~~~~~g~~~~~~~~~--~~~~---- 218 (403)
T 4dim_A 148 IVKATDLQ---GSKGIYIAKKEEEAIDGFNETMNLTKRDYCIVEEFIEGYEFGAQAFVYKNDVLFVMPHG--DETY---- 218 (403)
T ss_dssp EEECSCC--------CEEESSHHHHHHHHHHHHHHCSSSCCEEEECCCSEEEEEEEEEETTEEEEEEEEE--EEEE----
T ss_pred EEEECCCC---CCCCEEEECCHHHHHHHHHHHHhcCcCCcEEEEEccCCcEEEEEEEEECCEEEEEEEec--ceec----
Confidence 99999974 45899999999887532 368999999974444555666788886532110 0000
Q ss_pred hcCCccccccccccccCCcccccCCCCCCCCCccccccCCCC--cHHHHHHHHHHHHHHhCCc--EeEEEEEEeCCCCCc
Q 037279 213 SLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVEMP--SQSFLCELARGMREALGLN--LFNFDVMRDARDSNR 288 (327)
Q Consensus 213 ~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~lA~~~~~~lGl~--l~G~Dvi~~~~~g~~ 288 (327)
.+.. +.. . + ...+..++ ..+++.++|.++.++||+. .+++|++.++ | +
T Consensus 219 --~~~~-~~~-----~--------------~---~~~p~~l~~~~~~~l~~~a~~~~~~lg~~gg~~~ve~~~~~--~-~ 270 (403)
T 4dim_A 219 --MSHT-AVP-----V--------------G---HYVPLDVKDDIIEKTKTEVKKAIKALGLNNCAVNVDMILKD--N-E 270 (403)
T ss_dssp --ESSS-EEE-----E--------------E---EEESCCSCHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEEET--T-E
T ss_pred --cCCC-Ccc-----e--------------e---EEeCCCCCHHHHHHHHHHHHHHHHHcCCCCCcEEEEEEEEC--C-c
Confidence 0000 000 0 0 00111122 2467889999999999997 6799999973 3 4
Q ss_pred EEEEEEcCCCCCCCCC
Q 037279 289 YLIIDVNYFPGYAKMP 304 (327)
Q Consensus 289 ~~VidVN~fPg~~g~~ 304 (327)
+|++|||.-||-.+++
T Consensus 271 ~~~iEiN~R~~~~~~~ 286 (403)
T 4dim_A 271 VYIIELTGRVGANCLP 286 (403)
T ss_dssp EEEEEEESSCCSTTHH
T ss_pred EEEEEEcCCCCCCcHH
Confidence 9999999999976644
No 31
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=99.75 E-value=3.3e-16 Score=152.78 Aligned_cols=223 Identities=18% Similarity=0.236 Sum_probs=143.7
Q ss_pred hHHHHHHHhCCCeEEEeCCCCC-cccc-----------------------------CCccEEEEccCchhHHHHHHHHHH
Q 037279 27 PSLLTKASERGIDLIPIDPIKP-LVEQ-----------------------------GPFDCIVHKLYGPDWTRQLQQFSS 76 (327)
Q Consensus 27 ~~l~~~~~~~gi~~~~ld~~~~-l~~q-----------------------------~~~Dvilhk~~~~~~~~~l~~~~~ 76 (327)
..++++|++.|++++.++...+ ...+ .++|.|+.- .+... .+...++
T Consensus 18 ~~i~~aa~~lG~~vv~v~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~~~id~V~~~--~e~~~-~~~a~l~ 94 (425)
T 3vot_A 18 PFIFEEAERLGLKVTFFYNSAEDFPGNLPAVERCVPLPLFEDEEAAMDVVRQTFVEFPFDGVMTL--FEPAL-PFTAKAA 94 (425)
T ss_dssp CHHHHHHHHTTCEEEEEEETTSCCCCSCTTEEEEEEECTTTCHHHHHHHHHHHHHHSCCSEEECC--CGGGH-HHHHHHH
T ss_pred HHHHHHHHHCCCEEEEEECCCcccccCHhhccEEEecCCCCCHHHHHHHHHHhhhhcCCCEEEEC--CchhH-HHHHHHH
Confidence 3567999999999999964421 1111 123433321 11111 1112223
Q ss_pred hCCCCcccCcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEEEeeccCCCCcccee
Q 037279 77 QNPNVPIIDSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKPLVADGSVKSHQ 156 (327)
Q Consensus 77 ~~p~v~Vid~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~VvKP~~~~Gs~~sh~ 156 (327)
+.-+++ =+++++++.++||..|.++|.+ .|||+|++..+.+.+++. ...++||+|+||..|. +|.+
T Consensus 95 e~lglp-g~~~~~~~~~~dK~~~k~~l~~-------~gip~p~~~~~~~~~~~~---~~~~g~P~vvKp~~g~---gs~G 160 (425)
T 3vot_A 95 EALNLP-GLPFTTMENCRNKNKTRSILQQ-------NGLNTPVFHEFHTLADLE---NRKLSYPLVVKPVNGF---SSQG 160 (425)
T ss_dssp HHTTCS-SCCHHHHHHHHCHHHHHHHHHH-------TTCCCCCEEEESSGGGGT---TCCCCSSEEEEESCC--------
T ss_pred HHcCCC-CCCHHHHHHhhCHHHHHHHHHH-------CCCCCCceeccCcHHHHH---HhhcCCcEEEEECCCC---CCCC
Confidence 333555 3678999999999999999998 699999999999877654 3579999999999874 4689
Q ss_pred eEEEeChhhhcc------------------CCCceEEEeccCCCCeEEE--EEEECCEEEE--EEeccCCCchhhhhhhc
Q 037279 157 MYLIFDSQGLES------------------MTAPFVLQEFVNHGGFIFK--VYVAGMNVKC--VKRKSLPDISEEKLKSL 214 (327)
Q Consensus 157 m~lv~~~~~l~~------------------l~~p~vvQefI~h~g~d~K--V~ViG~~v~~--~~R~S~~~~~~~~~~~~ 214 (327)
+.++.++++|.. ...++++||||+ |..|- +++.++++.. ..++....
T Consensus 161 v~~v~~~~el~~a~~~~~~~~~~~~~~~~~~~~~~lvEe~i~--G~e~sv~~~~~~g~~~~~~~~~~~~~~--------- 229 (425)
T 3vot_A 161 VVRVDDRKELEEAVRKVEAVNQRDLNRFVHGKTGIVAEQFID--GPEFAIETLSIQGNVHVLSIGYKGNSK--------- 229 (425)
T ss_dssp CEEECSHHHHHHHHHHHHHHTTSSHHHHHTTCCCEEEEECCC--SCEEEEEEEEETTEEEEEEEEEEECCC---------
T ss_pred ceEechHHHHHHHHHHHHhhhhhhhhhhccCCCcEEEEEEec--CcEEEEEEEEeCCcEEEEeEEEEeccC---------
Confidence 999999988752 145899999996 55555 4555777643 22322110
Q ss_pred CCccccccccccccCCcccccCCCCCCCCCccccccCCCC--cHHHHHHHHHHHHHHhCCc--EeEEEEEEeCCCCCcEE
Q 037279 215 KGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVEMP--SQSFLCELARGMREALGLN--LFNFDVMRDARDSNRYL 290 (327)
Q Consensus 215 ~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~lA~~~~~~lGl~--l~G~Dvi~~~~~g~~~~ 290 (327)
+.+ |.. . + ...+..++ ...++.++|.++.++||+. ++.+|++.+. +|+ +|
T Consensus 230 -~~~-~~~-------~------------~---~~~Pa~l~~~~~~~i~~~~~~~~~alg~~~G~~~ve~~~~~-dG~-~~ 283 (425)
T 3vot_A 230 -GPF-FEE-------G------------V---YIAPAQLKEETRLAIVKEVTGAVSALGIHQGPAHTELRLDK-DGT-PY 283 (425)
T ss_dssp -CSB-CCC-------C------------E---EEESCCCCHHHHHHHHHHHHHHHHHTTCCSEEEEEEEEECT-TCC-EE
T ss_pred -CCc-ccc-------c------------e---EeecccCCHHHHHHHHHHHHHHHHHcCCCcceEEEEEEEEe-CCc-EE
Confidence 000 000 0 0 01111222 2457889999999999983 8889999986 454 89
Q ss_pred EEEEcCCCCCCCC
Q 037279 291 IIDVNYFPGYAKM 303 (327)
Q Consensus 291 VidVN~fPg~~g~ 303 (327)
++|||.-||-.++
T Consensus 284 ~iEiN~R~gG~~~ 296 (425)
T 3vot_A 284 VIEVGARIGGSGV 296 (425)
T ss_dssp EEEEESSCGGGGH
T ss_pred EEEEecCCCCCCc
Confidence 9999999975443
No 32
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}
Probab=99.75 E-value=1.2e-16 Score=153.14 Aligned_cols=225 Identities=12% Similarity=0.064 Sum_probs=154.1
Q ss_pred hhHHHHHHHhCCCeEEEeCCCCCc--c---cc---------------CCccEEEEccCchhHHHHHHHHHHhCCCCcccC
Q 037279 26 QPSLLTKASERGIDLIPIDPIKPL--V---EQ---------------GPFDCIVHKLYGPDWTRQLQQFSSQNPNVPIID 85 (327)
Q Consensus 26 ~~~l~~~~~~~gi~~~~ld~~~~l--~---~q---------------~~~Dvilhk~~~~~~~~~l~~~~~~~p~v~Vid 85 (327)
...++.++++.|++++.+|+.... . +. ..+|+++.-..... ...++ .+.+. | .+.+
T Consensus 11 g~~~~~a~~~~G~~v~~~~~~~~~~~~~~a~~~~~~~~d~~~l~~~~~~~d~v~~~~e~~~-~~~~~-~l~~~-g-~~g~ 86 (369)
T 3aw8_A 11 GRMLALAGYPLGLSFRFLDPSPEACAGQVGELVVGEFLDEGALLRFAEGLALVTYEFENVP-VEAAR-RLEGR-L-PLYP 86 (369)
T ss_dssp HHHHHHHHTTBTCCEEEEESCTTCGGGGTSEEEECCTTCHHHHHHHHTTCSEEEECCTTCC-HHHHH-HHHHH-S-CBSS
T ss_pred HHHHHHHHHHcCCEEEEEeCCCCChHHHhhceEecCCCCHHHHHHHHhCCCEEEECCCCcC-HHHHH-HHHHc-C-CcCC
Confidence 346778899999999999976321 1 10 24678776553322 22223 22332 4 6789
Q ss_pred cHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEEEeeccCC-CCccceeeEEEeChh
Q 037279 86 SPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKPLVAD-GSVKSHQMYLIFDSQ 164 (327)
Q Consensus 86 ~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~VvKP~~~~-Gs~~sh~m~lv~~~~ 164 (327)
++++++.+.||..+.++|.+ .|||+|++..+.+.+++.+. ...++||+|+||..++ | |.++.++.+++
T Consensus 87 ~~~~~~~~~dK~~~k~~l~~-------~gip~p~~~~~~~~~~~~~~-~~~~g~P~vvKp~~~~~~---g~Gv~~v~~~~ 155 (369)
T 3aw8_A 87 PAKALEVAQDRLREKTFFQG-------LGVPTPPFHPVDGPEDLEEG-LKRVGLPALLKTRRGGYD---GKGQALVRTEE 155 (369)
T ss_dssp CHHHHHHHTCHHHHHHHHHH-------HTCCCCCEEEESSHHHHHHH-HTTTCSSEEEEECCC---------EEEECSHH
T ss_pred CHHHHHHhcCHHHHHHHHHH-------CCCCCCCceeeCCHHHHHHH-HHHcCCCEEEEEcCCCCC---cceEEEECCHH
Confidence 99999999999999999998 59999999999987766553 4568999999999975 4 47899999998
Q ss_pred hhccC-----CCceEEEeccCCCCeEEEEEEECC---EEEEEEeccCCCchhhhhhhcCCccccccccccccCCcccccC
Q 037279 165 GLESM-----TAPFVLQEFVNHGGFIFKVYVAGM---NVKCVKRKSLPDISEEKLKSLKGFLPFSRISNLIDNDKKVHDD 236 (327)
Q Consensus 165 ~l~~l-----~~p~vvQefI~h~g~d~KV~ViG~---~v~~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~ 236 (327)
++... ..++++||||+. |+++.|.++++ ++....+.. +.. ..+.+.. .
T Consensus 156 el~~~~~~~~~~~~lvEe~i~~-g~e~sv~~~~d~~G~~~~~~~~~--~~~------~~~~~~~-------------~-- 211 (369)
T 3aw8_A 156 EALEALKALGGRGLILEGFVPF-DREVSLLAVRGRTGEVAFYPLVE--NRH------WGGILRL-------------S-- 211 (369)
T ss_dssp HHHHHHTTTCSSSEEEEECCCC-SEEEEEEEEECTTSCEEECCCEE--EEE------ETTEEEE-------------E--
T ss_pred HHHHHHHhcCCCcEEEEEcCCC-CEEEEEEEEECCCCCEEEECCee--eee------eCCEEEE-------------E--
Confidence 87532 468999999974 89999999974 443211100 000 0010000 0
Q ss_pred CCCCCCCCccccccCC-CC--cHHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCcEEEEEEcCCCCCCCC
Q 037279 237 GKKNSQGDEVDLESVE-MP--SQSFLCELARGMREALGLN-LFNFDVMRDARDSNRYLIIDVNYFPGYAKM 303 (327)
Q Consensus 237 ~~~~~~~~~~~~~~~~-~~--~~~~l~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~VidVN~fPg~~g~ 303 (327)
..+.. ++ ..++++++|.++.++||+. ++++|++.+. | +++++|||.-||..+.
T Consensus 212 -----------~~p~~~l~~~~~~~~~~~a~~~~~~lg~~G~~~vd~~~~~--~-~~~viEiN~R~~~~~~ 268 (369)
T 3aw8_A 212 -----------LAPAPGASEALQKKAEAYALRAMEALDYVGVLALEFFQVG--E-ELLFNEMAPRVHNSGH 268 (369)
T ss_dssp -----------EESCTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEET--T-EEEEEEEESSCCGGGT
T ss_pred -----------ECCCCCCCHHHHHHHHHHHHHHHHHCCCeeEEEEEEEEEC--C-cEEEEEEeCCcCCccc
Confidence 00111 11 2457899999999999997 8899999985 3 4899999999987543
No 33
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=99.74 E-value=9.8e-17 Score=156.93 Aligned_cols=239 Identities=11% Similarity=0.191 Sum_probs=157.2
Q ss_pred eEEEEEeCCccccccchhHHHHHHHhCCCeEEEeCCCCCc--------------cc---------cCCccEEEEccCchh
Q 037279 10 FRIGYALAPKKGQSLIQPSLLTKASERGIDLIPIDPIKPL--------------VE---------QGPFDCIVHKLYGPD 66 (327)
Q Consensus 10 ~~vG~~~~~~k~~~~~~~~l~~~~~~~gi~~~~ld~~~~l--------------~~---------q~~~Dvilhk~~~~~ 66 (327)
.+|+++-.- .....++.+++++|++++.+|..... .+ ...+|+|+.-.-...
T Consensus 20 ~~ili~g~g-----~~g~~~~~a~~~~G~~v~~v~~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~~d~V~~~~e~~~ 94 (433)
T 2dwc_A 20 QKILLLGSG-----ELGKEIAIEAQRLGVEVVAVDRYANAPAMQVAHRSYVGNMMDKDFLWSVVEREKPDAIIPEIEAIN 94 (433)
T ss_dssp CEEEEESCS-----HHHHHHHHHHHHTTCEEEEEESSTTCHHHHHSSEEEESCTTCHHHHHHHHHHHCCSEEEECSSCSC
T ss_pred CEEEEECCC-----HHHHHHHHHHHHCCCEEEEEECCCCChhhhhcceEEECCCCCHHHHHHHHHHcCCCEEEECcccCC
Confidence 466666442 13456888999999999999875311 00 125788887653221
Q ss_pred HHHHHHHHHHhCCCCcccCcHHHHHHhcCHHHHHHHH-HhcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEEEee
Q 037279 67 WTRQLQQFSSQNPNVPIIDSPDSIERLHNRISMLEVV-TQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKP 145 (327)
Q Consensus 67 ~~~~l~~~~~~~p~v~Vid~~~ai~~~~dR~~~~~~L-~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~VvKP 145 (327)
...+ +.+.+ .|+++.+++++++.+.||..+.++| ++ .|||+|++..+.+.+++.+. ...++||+|+||
T Consensus 95 -~~~~-~~l~~-~gi~~~~~~~~~~~~~dK~~~k~~l~~~-------~gip~p~~~~~~~~~~~~~~-~~~~g~P~vvKp 163 (433)
T 2dwc_A 95 -LDAL-FEFEK-DGYFVVPNARATWIAMHRERLRETLVKE-------AKVPTSRYMYATTLDELYEA-CEKIGYPCHTKA 163 (433)
T ss_dssp -HHHH-HHHHH-TTCCBSSCHHHHHHHHCHHHHHHHHHHT-------SCCCCCCEEEESSHHHHHHH-HHHHCSSEEEEE
T ss_pred -HHHH-HHHHh-cCCeeCCCHHHHHHhhCHHHHHHHHHHh-------cCCCCCCeeEeCCHHHHHHH-HHhcCCCEEEEE
Confidence 2222 22333 3677889999999999999999998 77 69999999999887766543 345789999999
Q ss_pred ccCCCCccceeeEEEeChhhhcc----C-------CCceEEEeccCCCCeEEEEEEEC-----CEEEEEEeccCCCchhh
Q 037279 146 LVADGSVKSHQMYLIFDSQGLES----M-------TAPFVLQEFVNHGGFIFKVYVAG-----MNVKCVKRKSLPDISEE 209 (327)
Q Consensus 146 ~~~~Gs~~sh~m~lv~~~~~l~~----l-------~~p~vvQefI~h~g~d~KV~ViG-----~~v~~~~R~S~~~~~~~ 209 (327)
..|. +|.++.++.++++|.. + ..++++||||+. |.++.|.++. ++++...-....+..
T Consensus 164 ~~g~---gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~-g~E~sv~~~~~~~~~G~~~~~~~~~~~~~~-- 237 (433)
T 2dwc_A 164 IMSS---SGKGSYFVKGPEDIPKAWEEAKTKARGSAEKIIVEEHIDF-DVEVTELAVRHFDENGEIVTTFPKPVGHYQ-- 237 (433)
T ss_dssp CCC---------EEECSGGGHHHHHHC---------CCEEEEECCCC-SEEEEECCEEEECTTSCEEEEEECCEEEEE--
T ss_pred CCCc---CCCCeEEECCHHHHHHHHHHHHhhcccCCCCEEEEccCCC-CeeEEEEEEecccCCCCEeEEEecccceEE--
Confidence 9764 5689999999988752 1 368999999975 7899998874 443221111110000
Q ss_pred hhhhcCCccccccccccccCCcccccCCCCCCCCCccccccCCCC--cHHHHHHHHHHHHHHhCC-cEeEEEEEEeCCCC
Q 037279 210 KLKSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVEMP--SQSFLCELARGMREALGL-NLFNFDVMRDARDS 286 (327)
Q Consensus 210 ~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~lA~~~~~~lGl-~l~G~Dvi~~~~~g 286 (327)
..+. +. .++ .+..++ ..++++++|.++.++||+ .++++|++.+.+
T Consensus 238 ----~~~~--~~--~~~----------------------~p~~l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~~~~~~-- 285 (433)
T 2dwc_A 238 ----IDGD--YH--ASW----------------------QPAEISEKAEREVYRIAKRITDVLGGLGIFGVEMFVKGD-- 285 (433)
T ss_dssp ----SSSS--EE--EEE----------------------ESCCCCHHHHHHHHHHHHHHHHHHCSSEECEEEEEEETT--
T ss_pred ----EcCE--EE--EEE----------------------cCCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeCC--
Confidence 0000 00 000 011122 145789999999999999 588999999853
Q ss_pred CcEEEEEEcCCCCCCCC
Q 037279 287 NRYLIIDVNYFPGYAKM 303 (327)
Q Consensus 287 ~~~~VidVN~fPg~~g~ 303 (327)
+++|+|||.-||..+.
T Consensus 286 -~~~viEiN~R~~~~~~ 301 (433)
T 2dwc_A 286 -KVWANEVSPRPHDTGM 301 (433)
T ss_dssp -EEEEEEEESSCCGGGG
T ss_pred -cEEEEEEeCCcCCCcc
Confidence 4899999999997654
No 34
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=99.73 E-value=4.7e-17 Score=155.52 Aligned_cols=220 Identities=13% Similarity=0.146 Sum_probs=131.1
Q ss_pred hhHHHHHHHhCCCeEEEeCCCCCc--c---cc-----------CCccEEEEccCchhHHHHHHHHHHhCCCCcccCcHHH
Q 037279 26 QPSLLTKASERGIDLIPIDPIKPL--V---EQ-----------GPFDCIVHKLYGPDWTRQLQQFSSQNPNVPIIDSPDS 89 (327)
Q Consensus 26 ~~~l~~~~~~~gi~~~~ld~~~~l--~---~q-----------~~~Dvilhk~~~~~~~~~l~~~~~~~p~v~Vid~~~a 89 (327)
...++++++++|++++.+|.+... . +. ..+|+++....+.. .. +.+.+.. .+.+++++
T Consensus 13 ~~~~~~a~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~v~~~~e~~~-~~-~~~~l~~----~~g~~~~~ 86 (365)
T 2z04_A 13 GWMTILEGRKLGFKFHVLEDKENAPACRVADRCFRTGQISEFVDSCDIITYEFEHIK-DE-VLEKCES----KLIPNPQA 86 (365)
T ss_dssp HHHHHHHHGGGTCEEEEECSSSSCHHHHHSSEEECGGGHHHHHHHCSEEEESSSCCC-HH-HHHHHTT----TBSSCTHH
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCCchhhhccceeeHHHHHHHhhcCCEEEECCCCCc-HH-HHHHHhh----hcCCCHHH
Confidence 456889999999999999986432 1 10 13688887664332 22 3233322 67899999
Q ss_pred HHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEEEeeccCC-CCccceeeEEEeChhhhcc
Q 037279 90 IERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKPLVAD-GSVKSHQMYLIFDSQGLES 168 (327)
Q Consensus 90 i~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~VvKP~~~~-Gs~~sh~m~lv~~~~~l~~ 168 (327)
++.+.||..+.++|.+ .|||+|++..+. .+++.+. ...++||+|+||..++ |+ .++.++.+.+++..
T Consensus 87 ~~~~~dK~~~~~~l~~-------~gip~p~~~~~~-~~~~~~~-~~~~~~P~vvKp~~~~~~g---~Gv~~v~~~~el~~ 154 (365)
T 2z04_A 87 LYVKKSRIREKLFLKK-------HGFPVPEFLVIK-RDEIIDA-LKSFKLPVVIKAEKLGYDG---KGQYRIKKLEDANQ 154 (365)
T ss_dssp HHHHTCHHHHHHHHHT-------TTCCCCCEEEC----------------CEEEECC-----------------------
T ss_pred HHHhhCHHHHHHHHHH-------cCCCCCCEEEEc-HHHHHHH-HHhcCCCEEEEEcCCCcCC---CCeEEECCHHHHHH
Confidence 9999999999999998 699999999887 6665443 3568999999999975 44 68999999988764
Q ss_pred C------CCceEEEeccCCCCeEEEEEEECC---EEEE--EEeccCCCchhhhhhhcCCccccccccccccCCcccccCC
Q 037279 169 M------TAPFVLQEFVNHGGFIFKVYVAGM---NVKC--VKRKSLPDISEEKLKSLKGFLPFSRISNLIDNDKKVHDDG 237 (327)
Q Consensus 169 l------~~p~vvQefI~h~g~d~KV~ViG~---~v~~--~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~ 237 (327)
. ..++++||||+. |+++.|.++++ ++.. ..+.-.+ .+.+.. .
T Consensus 155 ~~~~~~~~~~~lvEe~i~~-g~e~sv~~~~d~~G~~~~~~~~~~~~~----------~~~~~~-------------~--- 207 (365)
T 2z04_A 155 VVKNHDKEESFIIEEFVKF-EAEISCIGVRDREGKTYFYPQPFNKHE----------EGILIY-------------N--- 207 (365)
T ss_dssp ----------CEEEECCCC-SEEEEEEEEECTTCCEEECCEEEEEEE----------TTEEEE-------------E---
T ss_pred HHHHhccCCCEEEEccCCC-CEEEEEEEEECCCCCEEEECCEEEEEe----------CCEeEE-------------E---
Confidence 3 358999999975 89999999963 4432 1111000 010000 0
Q ss_pred CCCCCCCccccccCCCCcHHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCcEEEEEEcCCCCCCCCC
Q 037279 238 KKNSQGDEVDLESVEMPSQSFLCELARGMREALGLN-LFNFDVMRDARDSNRYLIIDVNYFPGYAKMP 304 (327)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~VidVN~fPg~~g~~ 304 (327)
..+.+. .++++++|.++.++||+. ++++|++.+. +|+ ++++|||.-||..+..
T Consensus 208 ----------~~p~~~--~~~~~~~~~~~~~~lg~~G~~~vd~~~~~-~g~-~~~iEiN~R~~~~~~~ 261 (365)
T 2z04_A 208 ----------YVPYAK--LKEAEEITKRLMELLDIVGVFTVEFFLLK-DGR-VLINEFAPRVHNTGHW 261 (365)
T ss_dssp ----------EEEEEC--CHHHHHHHHHHHHHTTCCEEEEEEEEECT-TSC-EEEEEEESSCCGGGTT
T ss_pred ----------ECCHhH--HHHHHHHHHHHHHHcCCEEEEEEEEEEeC-CCc-EEEEEeccCcCCCceE
Confidence 011111 567899999999999996 8899999975 353 8999999999875543
No 35
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=99.72 E-value=2.1e-16 Score=152.05 Aligned_cols=238 Identities=13% Similarity=0.163 Sum_probs=159.8
Q ss_pred ceEEEEEeCCccccccchhHHHHHHHhCCCeEEEeCCCCCcc--------------c---------cCCccEEEEccCch
Q 037279 9 RFRIGYALAPKKGQSLIQPSLLTKASERGIDLIPIDPIKPLV--------------E---------QGPFDCIVHKLYGP 65 (327)
Q Consensus 9 ~~~vG~~~~~~k~~~~~~~~l~~~~~~~gi~~~~ld~~~~l~--------------~---------q~~~Dvilhk~~~~ 65 (327)
..+|+++-+- ....+++.+++++|++++.+|...... + +..+|+++.-.-..
T Consensus 11 ~~~ili~g~g-----~~~~~~~~a~~~~G~~v~~~~~~~~~~~~~~~d~~~~~~~~d~~~l~~~~~~~~~d~v~~~~e~~ 85 (391)
T 1kjq_A 11 ATRVMLLGSG-----ELGKEVAIECQRLGVEVIAVDRYADAPAMHVAHRSHVINMLDGDALRRVVELEKPHYIVPEIEAI 85 (391)
T ss_dssp CCEEEEESCS-----HHHHHHHHHHHTTTCEEEEEESSTTCGGGGGSSEEEECCTTCHHHHHHHHHHHCCSEEEECSSCS
T ss_pred CCEEEEECCC-----HHHHHHHHHHHHcCCEEEEEECCCCCchhhhccceEECCCCCHHHHHHHHHHcCCCEEEECCCcC
Confidence 4567776442 134568899999999999999753110 0 01567777654321
Q ss_pred hHHHHHHHHHHhCCCCcccCcHHHHHHhcCHHHHHHHH-HhcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEEEe
Q 037279 66 DWTRQLQQFSSQNPNVPIIDSPDSIERLHNRISMLEVV-TQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAK 144 (327)
Q Consensus 66 ~~~~~l~~~~~~~p~v~Vid~~~ai~~~~dR~~~~~~L-~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~VvK 144 (327)
. .+.+ +.+.+ .|+++.+++++++.+.||..+.++| ++ .|||+|++..+.+.+++.+. ...++||+|+|
T Consensus 86 ~-~~~~-~~l~~-~gi~~~~~~~~~~~~~dK~~~~~~l~~~-------~gip~p~~~~~~~~~~~~~~-~~~~g~P~vvK 154 (391)
T 1kjq_A 86 A-TDML-IQLEE-EGLNVVPCARATKLTMNREGIRRLAAEE-------LQLPTSTYRFADSESLFREA-VADIGYPCIVK 154 (391)
T ss_dssp C-HHHH-HHHHH-TTCEESSCHHHHHHHHSHHHHHHHHHTT-------SCCCBCCEEEESSHHHHHHH-HHHHCSSEEEE
T ss_pred C-HHHH-HHHHh-CCCCcCCCHHHHHHhhCHHHHHHHHHHh-------CCCCCCCeeeeCCHHHHHHH-HHhcCCCEEEE
Confidence 1 2222 22333 3677889999999999999999998 66 69999999999987766553 34578999999
Q ss_pred eccCCCCccceeeEEEeChhhhcc-----------CCCceEEEeccCCCCeEEEEEEECC--EEEEEEeccCCCchhhhh
Q 037279 145 PLVADGSVKSHQMYLIFDSQGLES-----------MTAPFVLQEFVNHGGFIFKVYVAGM--NVKCVKRKSLPDISEEKL 211 (327)
Q Consensus 145 P~~~~Gs~~sh~m~lv~~~~~l~~-----------l~~p~vvQefI~h~g~d~KV~ViG~--~v~~~~R~S~~~~~~~~~ 211 (327)
|..|. +|.++.++.+++++.. ...++++||||+. |.++.|.++.+ .+. .. ....+...
T Consensus 155 p~~g~---gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~-g~E~sv~~~~~~~g~~-~~-~~~~~~~~--- 225 (391)
T 1kjq_A 155 PVMSS---SGKGQTFIRSAEQLAQAWKYAQQGGRAGAGRVIVEGVVKF-DFEITLLTVSAVDGVH-FC-APVGHRQE--- 225 (391)
T ss_dssp ESCC------CCCEEECSGGGHHHHHHHHHHHSGGGCCCEEEEECCCC-SEEEEEEEEEETTEEE-EC-CCEEEEEE---
T ss_pred eCCCC---CCCCeEEECCHHHHHHHHHHHHhhcccCCCCEEEEEecCC-CeEEEEEEEEeCCCeE-Ec-cCcceEEE---
Confidence 99764 4689999999988752 1468999999974 78999998853 221 10 00000000
Q ss_pred hhcCCccccccccccccCCcccccCCCCCCCCCccccccCCCC--cHHHHHHHHHHHHHHhCC-cEeEEEEEEeCCCCCc
Q 037279 212 KSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVEMP--SQSFLCELARGMREALGL-NLFNFDVMRDARDSNR 288 (327)
Q Consensus 212 ~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~lA~~~~~~lGl-~l~G~Dvi~~~~~g~~ 288 (327)
...+. .++ .+..++ ..++++++|.++.++||+ .++++|++.+.+ +
T Consensus 226 -----~~~~~--~~~----------------------~p~~l~~~~~~~~~~~a~~~~~~lg~~G~~~ve~~~~~~---~ 273 (391)
T 1kjq_A 226 -----DGDYR--ESW----------------------QPQQMSPLALERAQEIARKVVLALGGYGLFGVELFVCGD---E 273 (391)
T ss_dssp -----TTEEE--EEE----------------------ECCCCCHHHHHHHHHHHHHHHHHHCSSEEEEEEEEEETT---E
T ss_pred -----CCEEE--EEE----------------------eCCCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeCC---c
Confidence 00000 000 011122 145789999999999999 588999999853 4
Q ss_pred EEEEEEcCCCCCCCC
Q 037279 289 YLIIDVNYFPGYAKM 303 (327)
Q Consensus 289 ~~VidVN~fPg~~g~ 303 (327)
+||+|||.-||..+.
T Consensus 274 ~~viEiN~R~~~~~~ 288 (391)
T 1kjq_A 274 VIFSEVSPRPHDTGM 288 (391)
T ss_dssp EEEEEEESSCCGGGG
T ss_pred EEEEEEECCCCCCcc
Confidence 899999999996554
No 36
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=99.71 E-value=2e-15 Score=144.88 Aligned_cols=223 Identities=12% Similarity=0.059 Sum_probs=154.5
Q ss_pred hhHHHHHHHhCCCeEEEeCCCCC--ccccC-CccEEEEccCchhHHHHHHHHHHhCCCCcccCcHHHHHHhcCHHHHHHH
Q 037279 26 QPSLLTKASERGIDLIPIDPIKP--LVEQG-PFDCIVHKLYGPDWTRQLQQFSSQNPNVPIIDSPDSIERLHNRISMLEV 102 (327)
Q Consensus 26 ~~~l~~~~~~~gi~~~~ld~~~~--l~~q~-~~Dvilhk~~~~~~~~~l~~~~~~~p~v~Vid~~~ai~~~~dR~~~~~~ 102 (327)
-+.++.+|+++|+++ +|++.. ..-.+ ..|+|..-+..-. ...++.. .+. + .+..+++++++++||..+-++
T Consensus 13 g~m~~~aa~~lG~~v--~~~~~~a~~~~~~l~~d~it~e~e~v~-~~~l~~l-~~~-~-~v~p~~~a~~~~~DK~~~k~~ 86 (355)
T 3eth_A 13 GRMLRQAGEPLGIAV--WPVGLDAEPAAVPFQQSVITAEIERWP-ETALTRQ-LAR-H-PAFVNRDVFPIIADRLTQKQL 86 (355)
T ss_dssp HHHHHHHHGGGTCEE--EEECTTCCGGGCCCTTSEEEESCSCCC-CCHHHHH-HHT-C-TTBTTTTHHHHHHSHHHHHHH
T ss_pred HHHHHHHHHHCCCEE--ECCCCCCCceEEcccCCEEEECcCCcC-HHHHHHH-Hhc-C-CcCCCHHHHHHhcCHHHHHHH
Confidence 446788999999999 565532 11111 5688887664321 1222222 233 3 789999999999999999999
Q ss_pred HHhcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEEEeeccCCCCccceeeEEEeC--hhhhcc--CCCceEEEec
Q 037279 103 VTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKPLVADGSVKSHQMYLIFD--SQGLES--MTAPFVLQEF 178 (327)
Q Consensus 103 L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~~--~~~l~~--l~~p~vvQef 178 (327)
|.+ .|||||++..+.+.+++.+. ...++||+|+||..+ |+ +++++.++.+ +++|.. +. ++++|||
T Consensus 87 l~~-------~GIptp~~~~v~~~~e~~~~-~~~~G~P~VvKp~~~-G~-~GkGv~~v~~~~~~el~~a~~~-~vivEe~ 155 (355)
T 3eth_A 87 FDK-------LHLPTAPWQLLAERSEWPAV-FDRLGELAIVKRRTG-GY-DGRGQWRLRANETEQLPAECYG-ECIVEQG 155 (355)
T ss_dssp HHH-------TTCCBCCEEEECCGGGHHHH-HHHHCSEEEEEESSS-CC-TTTTEEEEETTCGGGSCGGGTT-TEEEEEC
T ss_pred HHH-------CccCCCCEEEECCHHHHHHH-HHHcCCCEEEEecCC-CC-CCCeEEEEcCCCHHHHHHHhhC-CEEEEEc
Confidence 998 69999999999988777654 356899999999985 34 5799999999 888764 23 7999999
Q ss_pred cCCCCeEEEEEEECC---EEEEEEeccCCCchhhhhhhcCCccccccccccccCCcccccCCCCCCCCCccccccCCCC-
Q 037279 179 VNHGGFIFKVYVAGM---NVKCVKRKSLPDISEEKLKSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVEMP- 254 (327)
Q Consensus 179 I~h~g~d~KV~ViG~---~v~~~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 254 (327)
|+. ++.+-|.++++ ++.+ .|-. +.....|.+... + .+..++
T Consensus 156 I~~-~~Eisv~v~~~~~G~~~~-----~p~~---e~~~~~g~~~~~----~----------------------~pa~l~~ 200 (355)
T 3eth_A 156 INF-SGEVSLVGARGFDGSTVF-----YPLT---HNLHQDGILRTS----V----------------------AFPQANA 200 (355)
T ss_dssp CCC-SEEEEEEEEECTTSCEEE-----CCCE---EEEEETTEEEEE----E----------------------ECSSCCH
T ss_pred cCC-CcEEEEEEEEcCCCCEEE-----ECCE---EEEeeCCeEEEE----E----------------------CCCCCCH
Confidence 974 78999999853 3321 1100 000000111100 0 011122
Q ss_pred -cHHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCcEEEEEEcCCCCCCCC
Q 037279 255 -SQSFLCELARGMREALGLN-LFNFDVMRDARDSNRYLIIDVNYFPGYAKM 303 (327)
Q Consensus 255 -~~~~l~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~VidVN~fPg~~g~ 303 (327)
..++++++|.++.++||.. ++++|++.++ + ++||+|||.-|+-.|.
T Consensus 201 ~~~~~~~~~a~~i~~aLg~~G~~~vEf~~~~--~-~~~v~EinpR~~~sg~ 248 (355)
T 3eth_A 201 QQQARAEEMLSAIMQELGYVGVMAMECFVTP--Q-GLLINELAPRVHNSGH 248 (355)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEEEEEEET--T-EEEEEEEESSCCGGGT
T ss_pred HHHHHHHHHHHHHHHHCCCeeEEEEEEEEEC--C-cEEEEEeeCCCCCCcc
Confidence 2457899999999999996 8899999984 3 4999999999997543
No 37
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=99.70 E-value=1.3e-15 Score=145.54 Aligned_cols=206 Identities=12% Similarity=0.218 Sum_probs=142.8
Q ss_pred hHHHHHHHhCCCeEEEeCCCCC-----ccc-----------------cCCccEEEEccCchhHHHHHHHHHHhCCCCccc
Q 037279 27 PSLLTKASERGIDLIPIDPIKP-----LVE-----------------QGPFDCIVHKLYGPDWTRQLQQFSSQNPNVPII 84 (327)
Q Consensus 27 ~~l~~~~~~~gi~~~~ld~~~~-----l~~-----------------q~~~Dvilhk~~~~~~~~~l~~~~~~~p~v~Vi 84 (327)
..++.+|++.|++++.+|.+.. +.+ ...+|+|+.-........ +.+.+.+..++++.
T Consensus 14 ~~~~~~Ak~~G~~vv~vd~~~~~~~~~~aD~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~-~~~~~~~~~~~~~g 92 (363)
T 4ffl_A 14 FEAAYLSKKAGMKVVLVDKNPQALIRNYADEFYCFDVIKEPEKLLELSKRVDAVLPVNENLACIE-FLNSIKEKFSCPVL 92 (363)
T ss_dssp HHHHHHHHHTTCEEEEEESCTTCTTTTTSSEEEECCTTTCHHHHHHHHTSSSEEEECCCCHHHHH-HHHHHGGGCSSCBC
T ss_pred HHHHHHHHHCCCEEEEEeCCCCChhHhhCCEEEECCCCcCHHHHHHHhcCCCEEEECCCChhHHH-HHHHHHHHCCCccC
Confidence 3577899999999999996632 111 024677776654433233 33334555678889
Q ss_pred CcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEEEeeccCCCCccceeeEEEeChh
Q 037279 85 DSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKPLVADGSVKSHQMYLIFDSQ 164 (327)
Q Consensus 85 d~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~~~~ 164 (327)
.+++++++++||..+.++|.+ .|+|+|.+. .++||+|+||..|. ++.++.++.+.+
T Consensus 93 ~~~~a~~~~~dK~~~k~~l~~-------~gip~~~~~--------------~ig~P~vvKp~~g~---g~~gv~~v~~~~ 148 (363)
T 4ffl_A 93 FDFEAYRISRDKKKSKDYFKS-------IGVPTPQDR--------------PSKPPYFVKPPCES---SSVGARIIYDDK 148 (363)
T ss_dssp CCHHHHHHHTSHHHHHHHHHH-------TTCCCCCBS--------------CSSSCEEEECSSCC---TTTTCEEEC---
T ss_pred CCHHHHHHhhCHHHHHHHHHh-------cCCCCCCce--------------ecCCCEEEEECCCC---CCcCeEEeccHH
Confidence 999999999999999999998 699999752 47899999999875 458999999999
Q ss_pred hhccCCCceEEEeccCCCCeEEEEEEECCEE--EEE--EeccCCCchhhhhhhcCCccccccccccccCCcccccCCCCC
Q 037279 165 GLESMTAPFVLQEFVNHGGFIFKVYVAGMNV--KCV--KRKSLPDISEEKLKSLKGFLPFSRISNLIDNDKKVHDDGKKN 240 (327)
Q Consensus 165 ~l~~l~~p~vvQefI~h~g~d~KV~ViG~~v--~~~--~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~ 240 (327)
++......+++||||+ |+.+-|.++++.- ... .+...++ . .
T Consensus 149 ~~~~~~~~~~~ee~i~--g~e~sv~~~~d~~~~~~~~~~~~~~~~-------------------~--------~------ 193 (363)
T 4ffl_A 149 DLEGLEPDTLVEEYVE--GEVVSLEVVGDGSHFAVVKETLVHIDE-------------------T--------Y------ 193 (363)
T ss_dssp ---CCCTTCEEEECCC--SEEEEEEEEEESSCEEECCCEEEEECT-------------------T--------S------
T ss_pred Hhhhhccchhhhhhcc--CcEEEEEEEEECCeEEEEEEEEeccCC-------------------c--------c------
Confidence 9999999999999994 7888888886532 111 0110000 0 0
Q ss_pred CCCCccccccCCCCcHHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCcEEEEEEcC-CCCC
Q 037279 241 SQGDEVDLESVEMPSQSFLCELARGMREALGLN-LFNFDVMRDARDSNRYLIIDVNY-FPGY 300 (327)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~l~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~VidVN~-fPg~ 300 (327)
+ .....+.+..++++++|.++.++||+. ++++|++.+++ .+||+|||. |||.
T Consensus 194 --~---~~~~~p~~~~~~~~~~a~~~~~~l~~~G~~~vef~~~~~---~~~viEiN~R~~g~ 247 (363)
T 4ffl_A 194 --D---CHMVTPLPANPLFRQISHDLAANLPLKGIMDVEAIFGPK---GLRVIEIDARFPSQ 247 (363)
T ss_dssp --C---EEEEEECCCCHHHHHHHHHHHHTTTCEEEEEEEEEEETT---EEEEEEEECSCCSS
T ss_pred --c---ceeecchhHHHHHHHHHHHHHHhCCccceeeeeeEEeCC---eEEEEEEeCCCCCC
Confidence 0 000111233568899999999999997 77899999853 389999999 7874
No 38
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=99.69 E-value=6.6e-16 Score=151.22 Aligned_cols=238 Identities=13% Similarity=0.168 Sum_probs=160.9
Q ss_pred CceEEEEEeCCccccccchhHHHHHHHhCCCeEEEeCCCCCc-----cc---c-------------CCccEEEEccCchh
Q 037279 8 QRFRIGYALAPKKGQSLIQPSLLTKASERGIDLIPIDPIKPL-----VE---Q-------------GPFDCIVHKLYGPD 66 (327)
Q Consensus 8 ~~~~vG~~~~~~k~~~~~~~~l~~~~~~~gi~~~~ld~~~~l-----~~---q-------------~~~Dvilhk~~~~~ 66 (327)
+..+||++-.-- ..+.++.+|++.|++++.+|.+..- .+ . ...|+|+.-+...
T Consensus 34 ~~~~IlIlG~G~-----lg~~~~~aa~~lG~~v~v~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~a~~~D~V~~~~e~~- 107 (419)
T 4e4t_A 34 PGAWLGMVGGGQ-----LGRMFCFAAQSMGYRVAVLDPDPASPAGAVADRHLRAAYDDEAALAELAGLCEAVSTEFENV- 107 (419)
T ss_dssp TTCEEEEECCSH-----HHHHHHHHHHHTTCEEEEECSCTTCHHHHHSSEEECCCTTCHHHHHHHHHHCSEEEECCTTC-
T ss_pred CCCEEEEECCCH-----HHHHHHHHHHHCCCEEEEECCCCcCchhhhCCEEEECCcCCHHHHHHHHhcCCEEEEccCcC-
Confidence 345777776432 3456889999999999999976321 00 0 0357777443222
Q ss_pred HHHHHHHHHHhCCCCcccCcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhcc----CCCcEE
Q 037279 67 WTRQLQQFSSQNPNVPIIDSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLK----LTFPVI 142 (327)
Q Consensus 67 ~~~~l~~~~~~~p~v~Vid~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~----l~~P~V 142 (327)
....+ +++.+. ..+..++++++.+.||..+.++|.+ .|||+|++..+.+.+++.+.. .. + ||+|
T Consensus 108 ~~~~~-~~l~~~--~~vgp~~~a~~~~~dK~~~k~~l~~-------~Gip~p~~~~v~~~~e~~~~~-~~~~~~~-~P~V 175 (419)
T 4e4t_A 108 PAASL-DFLART--TFVAPAGRCVAVAQDRIAEKRFIEA-------SGVPVAPHVVIESAAALAALD-DAALDAV-LPGI 175 (419)
T ss_dssp CHHHH-HHHHTT--SEESSCHHHHHHHTCHHHHHHHHHH-------TTCCBCCEEEECSHHHHHTSC-HHHHHTT-CSEE
T ss_pred CHHHH-HHHHcc--CCcCCCHHHHHHhcCHHHHHHHHHH-------cCcCCCCeEEECCHHHHHHHH-Hhhcccc-CCEE
Confidence 12223 333444 4788999999999999999999998 699999999999876654432 33 7 9999
Q ss_pred EeeccCCCCccceeeEEEeChhhhccC-----CCceEEEeccCCCCeEEEEEEECC---EEEEEEeccCCCchhhhhhhc
Q 037279 143 AKPLVADGSVKSHQMYLIFDSQGLESM-----TAPFVLQEFVNHGGFIFKVYVAGM---NVKCVKRKSLPDISEEKLKSL 214 (327)
Q Consensus 143 vKP~~~~Gs~~sh~m~lv~~~~~l~~l-----~~p~vvQefI~h~g~d~KV~ViG~---~v~~~~R~S~~~~~~~~~~~~ 214 (327)
+||..+ |+ +++++.++.++++|... ..++++||||+. ++.+.|.++++ ++.. .|-. +....
T Consensus 176 vKp~~~-g~-~G~Gv~~v~~~~el~~a~~~~~~~~~lvEe~i~~-~~Eisv~v~~~~~G~~~~-----~~~~---e~~~~ 244 (419)
T 4e4t_A 176 LKTARL-GY-DGKGQVRVSTAREARDAHAALGGVPCVLEKRLPL-KYEVSALIARGADGRSAA-----FPLA---QNVHH 244 (419)
T ss_dssp EEESSS-CC-TTTTEEEECSHHHHHHHHHHTTTCCEEEEECCCE-EEEEEEEEEECTTSCEEE-----CCCE---EEEEE
T ss_pred EEecCC-CC-CCCceEEECCHHHHHHHHHhcCCCcEEEeecCCC-CeEEEEEEEEcCCCCEEE-----EeCe---EEEee
Confidence 999832 23 56899999999887532 468999999974 68999999953 3321 1100 00000
Q ss_pred CCccccccccccccCCcccccCCCCCCCCCccccccCC-CC--cHHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCcEE
Q 037279 215 KGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVE-MP--SQSFLCELARGMREALGLN-LFNFDVMRDARDSNRYL 290 (327)
Q Consensus 215 ~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~l~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~ 290 (327)
.+.+... ..+.. ++ ..++++++|.++.++||+. ++++|++++. +|+ +|
T Consensus 245 ~g~~~~~--------------------------~~Pa~~l~~~~~~~~~~~a~~i~~~lg~~G~~~vE~~~~~-dG~-~~ 296 (419)
T 4e4t_A 245 NGILALT--------------------------IVPAPAADTARVEEAQQAAVRIADTLGYVGVLCVEFFVLE-DGS-FV 296 (419)
T ss_dssp TTEEEEE--------------------------EESCTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEET-TCC-EE
T ss_pred CCeEEEE--------------------------EcCCCCCCHHHHHHHHHHHHHHHHHCCCeeEEEEEEEEeC-CCC-EE
Confidence 0110000 00111 22 2467899999999999997 8899999985 353 89
Q ss_pred EEEEcCCCCCCC
Q 037279 291 IIDVNYFPGYAK 302 (327)
Q Consensus 291 VidVN~fPg~~g 302 (327)
|+|||.-|+-.+
T Consensus 297 v~EiNpR~~~sg 308 (419)
T 4e4t_A 297 ANEMAPRPHNSG 308 (419)
T ss_dssp EEEEESSCCGGG
T ss_pred EEEEeCCCCCCC
Confidence 999999999654
No 39
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=99.67 E-value=3.7e-15 Score=139.74 Aligned_cols=238 Identities=15% Similarity=0.136 Sum_probs=142.1
Q ss_pred EEEEEeCCccccccchhHHHHHHHhCCCeEEEeCCCCCcc--------cc---CC-c---------cEEEEccCchhHHH
Q 037279 11 RIGYALAPKKGQSLIQPSLLTKASERGIDLIPIDPIKPLV--------EQ---GP-F---------DCIVHKLYGPDWTR 69 (327)
Q Consensus 11 ~vG~~~~~~k~~~~~~~~l~~~~~~~gi~~~~ld~~~~l~--------~q---~~-~---------Dvilhk~~~~~~~~ 69 (327)
+|++.... ....++++++++|++++.+|...... +. .+ + |+++... ......
T Consensus 4 ~Ililg~g------~~~~l~~a~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~d~i~~~~-e~~~~~ 76 (334)
T 2r85_A 4 RIATYASH------SALQILKGAKDEGFETIAFGSSKVKPLYTKYFPVADYFIEEKYPEEELLNLNAVVVPTG-SFVAHL 76 (334)
T ss_dssp EEEEESST------THHHHHHHHHHTTCCEEEESCGGGHHHHHTTSCCCSEEECSSCCHHHHHHTTEEECCCT-THHHHH
T ss_pred EEEEECCh------hHHHHHHHHHhCCCEEEEEECCCCCcccccccccCceEecCCcChHHhcccCCEEEECc-chhhhh
Confidence 56666665 45578899999999999999874210 10 11 2 5554321 111111
Q ss_pred HHHHHHHhCCCCcccCcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEEEeeccCC
Q 037279 70 QLQQFSSQNPNVPIIDSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKPLVAD 149 (327)
Q Consensus 70 ~l~~~~~~~p~v~Vid~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~VvKP~~~~ 149 (327)
.++. + +..|++++++++++..+.||..+.++|.+ .|||+|++ +.+.+ .++||+|+||..|+
T Consensus 77 ~~~~-l-e~~g~~~~~~~~~~~~~~dK~~~~~~l~~-------~gip~p~~--~~~~~--------~l~~P~vvKP~~g~ 137 (334)
T 2r85_A 77 GIEL-V-ENMKVPYFGNKRVLRWESDRNLERKWLKK-------AGIRVPEV--YEDPD--------DIEKPVIVKPHGAK 137 (334)
T ss_dssp CHHH-H-HTCCSCBBSCTTHHHHHHSHHHHHHHHHH-------TTCCCCCB--CSCGG--------GCCSCEEEEECC--
T ss_pred HHHH-H-HHcCCCccCCHHHHHHHHhHHHHHHHHHH-------cCCCCCCc--cCChH--------HcCCCEEEEeCCCC
Confidence 1122 2 45689999999999999999999999998 69999999 44432 36799999999975
Q ss_pred CCccceeeEEEeChhhhccC----------C--CceEEEeccCCCCeEEEEEE----ECCEEEE--E-EeccCCCchhhh
Q 037279 150 GSVKSHQMYLIFDSQGLESM----------T--APFVLQEFVNHGGFIFKVYV----AGMNVKC--V-KRKSLPDISEEK 210 (327)
Q Consensus 150 Gs~~sh~m~lv~~~~~l~~l----------~--~p~vvQefI~h~g~d~KV~V----iG~~v~~--~-~R~S~~~~~~~~ 210 (327)
+|.++.++.++++|... . .++++||||+ |..+-+.+ +++++.. . .|.... .++
T Consensus 138 ---~s~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~lvee~i~--G~e~~~~~~~~~~~~~v~~~~~~g~~~~~---~~~ 209 (334)
T 2r85_A 138 ---GGKGYFLAKDPEDFWRKAEKFLGIKRKEDLKNIQIQEYVL--GVPVYPHYFYSKVREELELMSIDRRYESN---VDA 209 (334)
T ss_dssp -----TTCEEESSHHHHHHHHHHHHCCCSGGGCCSEEEEECCC--CEEEEEEEEEETTTTEEEEEEEEEEEEEE---GGG
T ss_pred ---CCCCEEEECCHHHHHHHHHHHHhhcccCCCCcEEEEeccC--CceeEEEEeecCcCceeeeeeeccEEEec---cCc
Confidence 45889999999877532 2 6899999996 55554221 2222211 1 111110 000
Q ss_pred hhhcCCccccccccccccC-CcccccCCCCCCCCCccccccCCCC--cHHHHHHHHHHHHHHh-----C-CcEeEEEEEE
Q 037279 211 LKSLKGFLPFSRISNLIDN-DKKVHDDGKKNSQGDEVDLESVEMP--SQSFLCELARGMREAL-----G-LNLFNFDVMR 281 (327)
Q Consensus 211 ~~~~~g~~~f~~~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~lA~~~~~~l-----G-l~l~G~Dvi~ 281 (327)
.+.......+... ...... .|. .+..++ ..++++++|.++.++| + ..++++|++.
T Consensus 210 ------~~~~~~~~~~~~~~~~~~~~------~g~----~p~~l~~~~~~~i~~~a~~~~~~l~~~~~~~~G~~~vd~~~ 273 (334)
T 2r85_A 210 ------IGRIPAKDQLEFDMDITYTV------IGN----IPIVLRESLLMDVIEAGERVVKAAEELMGGLWGPFCLEGVF 273 (334)
T ss_dssp ------GGGSCHHHHTTSCCCCCEEE------EEE----EECCCCGGGHHHHHHHHHHHHHHHHHHSSCCCEEEEEEEEE
T ss_pred ------ccccccccccccccCCceee------eCC----CCcccCHHHHHHHHHHHHHHHHHHHhhcccccccEEEEEEE
Confidence 0000000000000 000000 000 011121 2568899999999999 4 4478999999
Q ss_pred eCCCCCcEEEEEEcCCCCC
Q 037279 282 DARDSNRYLIIDVNYFPGY 300 (327)
Q Consensus 282 ~~~~g~~~~VidVN~fPg~ 300 (327)
+. +| ++|++|||.-||-
T Consensus 274 ~~-~g-~~~viEiN~R~g~ 290 (334)
T 2r85_A 274 TP-DL-EFVVFEISARIVA 290 (334)
T ss_dssp CT-TS-CEEEEEEECSCCG
T ss_pred CC-CC-CEEEEEEeCCcCC
Confidence 75 34 3899999998886
No 40
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=99.67 E-value=9e-16 Score=150.83 Aligned_cols=223 Identities=17% Similarity=0.236 Sum_probs=151.3
Q ss_pred hhHHHHHHHhCCCeEEEeCCCC----C----------c---------cc---------cCCccEEEEccC--chhHHHHH
Q 037279 26 QPSLLTKASERGIDLIPIDPIK----P----------L---------VE---------QGPFDCIVHKLY--GPDWTRQL 71 (327)
Q Consensus 26 ~~~l~~~~~~~gi~~~~ld~~~----~----------l---------~~---------q~~~Dvilhk~~--~~~~~~~l 71 (327)
..+++++|+++|++++.++.+. + + .+ ....|+|+.-.. .+. ..+
T Consensus 18 a~~i~~aa~~~G~~~v~v~~~~~~~~~~~~~ad~~~~i~~~~~~~~~~d~~~l~~~~~~~~~d~i~p~~g~~~e~--~~~ 95 (446)
T 3ouz_A 18 ALRALRTIKEMGKKAICVYSEADKDALYLKYADASICIGKARSSESYLNIPAIIAAAEIAEADAIFPGYGFLSEN--QNF 95 (446)
T ss_dssp HHHHHHHHHHTTCEEEEEEEGGGTTCTHHHHSSEEEEEECCTTTTGGGCHHHHHHHHHHHTCSEEECCSSTTTTC--HHH
T ss_pred HHHHHHHHHHcCCEEEEEEcCcccccchHhhCCEEEEcCCCCccccccCHHHHHHHHHHhCcCEEEECCcccccC--HHH
Confidence 4578999999999999984221 1 1 00 013566664421 111 122
Q ss_pred HHHHHhCCCCccc-CcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEE--EEcCccchhHHHhccCCCcEEEeeccC
Q 037279 72 QQFSSQNPNVPII-DSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQV--VVSEMKSLTSIEDLKLTFPVIAKPLVA 148 (327)
Q Consensus 72 ~~~~~~~p~v~Vi-d~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~--~~~~~~~~~~~~~~~l~~P~VvKP~~~ 148 (327)
.+...+ .|++++ +++++++.+.||..+.++|.+ .|||+|++. .+.+.+++.+. ...++||+|+||..|
T Consensus 96 ~~~~~~-~g~~~~g~~~~~~~~~~dK~~~~~~l~~-------~Gip~p~~~~~~~~~~~e~~~~-~~~~g~PvvvKp~~g 166 (446)
T 3ouz_A 96 VEICAK-HNIKFIGPSVEAMNLMSDKSKAKQVMQR-------AGVPVIPGSDGALAGAEAAKKL-AKEIGYPVILKAAAG 166 (446)
T ss_dssp HHHHHH-TTCEESSCCHHHHHHHHSHHHHHHHHHH-------TTCCBCSBCSSSCCSHHHHHHH-HHHHCSSEEEEETTC
T ss_pred HHHHHH-CCCceECcCHHHHHHhCCHHHHHHHHHH-------cCCCcCCCcccCCCCHHHHHHH-HHHhCCCEEEEECCC
Confidence 333333 378887 899999999999999999998 699999997 67776666543 456899999999987
Q ss_pred CCCccceeeEEEeChhhhccC-------------CCceEEEeccCCCCeEEEEEEECC---EEEEE-Eec-cCCCchhhh
Q 037279 149 DGSVKSHQMYLIFDSQGLESM-------------TAPFVLQEFVNHGGFIFKVYVAGM---NVKCV-KRK-SLPDISEEK 210 (327)
Q Consensus 149 ~Gs~~sh~m~lv~~~~~l~~l-------------~~p~vvQefI~h~g~d~KV~ViG~---~v~~~-~R~-S~~~~~~~~ 210 (327)
. +|++|.++.++++|... ..++++||||+. .+.+.|.|+++ +++.. .|. +....
T Consensus 167 ~---gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g-~~e~~v~v~~d~~g~~~~~~~~~~~~~~~---- 238 (446)
T 3ouz_A 167 G---GGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEKYIQN-PRHIEVQVIGDSFGNVIHVGERDCSMQRR---- 238 (446)
T ss_dssp C---TTCSEEEECSGGGHHHHHHHHHHHHHHHHSCCCEEEEECCSS-CEEEEEEEEECTTSCEEEEEEEEEEEEET----
T ss_pred C---CCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCC-CcEEEEEEEEcCCCCEEEEeeceeeeeec----
Confidence 5 46899999999887532 568999999973 38999999965 33322 221 11000
Q ss_pred hhhcCCccccccccccccCCcccccCCCCCCCCCccccccC-CCC--cHHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCC
Q 037279 211 LKSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESV-EMP--SQSFLCELARGMREALGLN-LFNFDVMRDARDS 286 (327)
Q Consensus 211 ~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~l~~lA~~~~~~lGl~-l~G~Dvi~~~~~g 286 (327)
+ .+.. +..+. .++ ..+++.++|.++.++||+. .+++|++.+.+ |
T Consensus 239 ----------~--~~~~-------------------~~~p~~~l~~~~~~~l~~~a~~~~~~lg~~G~~~ve~~~~~~-g 286 (446)
T 3ouz_A 239 ----------H--QKLI-------------------EESPAILLDEKTRTRLHETAIKAAKAIGYEGAGTFEFLVDKN-L 286 (446)
T ss_dssp ----------T--EEEE-------------------EEESCTTSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECTT-C
T ss_pred ----------C--ceEE-------------------EECCCCCCCHHHHHHHHHHHHHHHHHcCCCCceEEEEEEeCC-C
Confidence 0 0000 00011 111 2467889999999999997 56699999863 4
Q ss_pred CcEEEEEEcCCCCC
Q 037279 287 NRYLIIDVNYFPGY 300 (327)
Q Consensus 287 ~~~~VidVN~fPg~ 300 (327)
++|++|||.-|+-
T Consensus 287 -~~~~iEiNpR~~g 299 (446)
T 3ouz_A 287 -DFYFIEMNTRLQV 299 (446)
T ss_dssp -CEEEEEEESSCCT
T ss_pred -CEEEEEeECCCCC
Confidence 3999999998864
No 41
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus}
Probab=99.66 E-value=1.2e-15 Score=143.29 Aligned_cols=179 Identities=17% Similarity=0.184 Sum_probs=123.0
Q ss_pred CCccEEEEccCch-hHHHHHHHHHHhCCCCcccCcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhH
Q 037279 53 GPFDCIVHKLYGP-DWTRQLQQFSSQNPNVPIIDSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTS 131 (327)
Q Consensus 53 ~~~Dvilhk~~~~-~~~~~l~~~~~~~p~v~Vid~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~ 131 (327)
.++|+++.-.... ...+.+.+.+.. +|..+.+++++++.+.||..+.++|++ ||++|++++
T Consensus 68 ~~~D~~~~i~~~ed~~l~~~~~~l~~-~g~~~g~~~~~~~~~~dK~~~~~~l~~--------Gip~p~~~~--------- 129 (305)
T 3df7_A 68 EKSDAFLIIAPEDDFLLYTLTKKAEK-YCENLGSSSRAIAVTSDKWELYKKLRG--------EVQVPQTSL--------- 129 (305)
T ss_dssp TTCSEEEEECCCGGGHHHHHHHHHHT-TSEESSCCHHHHHHHTSHHHHHHHHTT--------TSCCCCEES---------
T ss_pred HhcCEEEEEccCCcHHHHHHHHHHHh-cCCccCCCHHHHHHhcCHHHHHHHHHh--------CCCCCCEec---------
Confidence 3788877664322 223344444433 567899999999999999999999874 899999984
Q ss_pred HHhccCCCcEEEeeccCCCCccceeeEEEeChhhhccCCCceEEEeccCCCCeEEEEEEECC-EEEEEEeccCCCchhhh
Q 037279 132 IEDLKLTFPVIAKPLVADGSVKSHQMYLIFDSQGLESMTAPFVLQEFVNHGGFIFKVYVAGM-NVKCVKRKSLPDISEEK 210 (327)
Q Consensus 132 ~~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~~~~~l~~l~~p~vvQefI~h~g~d~KV~ViG~-~v~~~~R~S~~~~~~~~ 210 (327)
..++||+|+||..|+| |+++.++.+ ...++++||||+ |+++.|.++++ .+....+.. . +..
T Consensus 130 ---~~~~~P~vvKP~~g~g---s~Gv~~v~~------~~~~~lvEe~I~--G~e~sv~v~~g~~~~~~~~~~-~-~~~-- 191 (305)
T 3df7_A 130 ---RPLDCKFIIKPRTACA---GEGIGFSDE------VPDGHIAQEFIE--GINLSVSLAVGEDVKCLSVNE-Q-IIN-- 191 (305)
T ss_dssp ---SCCSSSEEEEESSCC-------CBCCSS------CCTTEEEEECCC--SEEEEEEEEESSSEEEEEEEE-E-EEE--
T ss_pred ---ccCCCCEEEEeCCCCC---CCCEEEEec------CCCCEEEEeccC--CcEEEEEEEeCCeEEEEEEee-E-ecc--
Confidence 2578999999999754 578888877 567899999997 89999999964 333322110 0 000
Q ss_pred hhhcCCccccccccccccCCcccccCCCCCCCCCccccccCCCC--cHHHHHHHHHHHHHHh-CCc-EeEEEEEEeCCCC
Q 037279 211 LKSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVEMP--SQSFLCELARGMREAL-GLN-LFNFDVMRDARDS 286 (327)
Q Consensus 211 ~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~lA~~~~~~l-Gl~-l~G~Dvi~~~~~g 286 (327)
.+.+.. . ..+..++ ..++++++|.++.++| |+. ++++|++.+ |
T Consensus 192 ------~~~~~g--~----------------------~~p~~l~~~~~~~i~~~a~~~~~~l~g~~G~~~vD~~~~---~ 238 (305)
T 3df7_A 192 ------NFRYAG--A----------------------VVPARISDEVKREVVEEAVRAVECVEGLNGYVGVDIVYS---D 238 (305)
T ss_dssp ------TTEEEE--E----------------------EESCCCCHHHHHHHHHHHHHHHTTSTTCCEEEEEEEEES---S
T ss_pred ------Cceecc--c----------------------cccCCCCHHHHHHHHHHHHHHHHHcCCCcCceEEEEEEC---C
Confidence 001100 0 0111111 2468899999999999 965 889999994 3
Q ss_pred CcEEEEEEcCCCCCC
Q 037279 287 NRYLIIDVNYFPGYA 301 (327)
Q Consensus 287 ~~~~VidVN~fPg~~ 301 (327)
++|++|||.-||..
T Consensus 239 -~~~viEiNpR~~~~ 252 (305)
T 3df7_A 239 -QPYVIEINARLTTP 252 (305)
T ss_dssp -SEEEEEEESSCCGG
T ss_pred -CEEEEEEcCCCCCC
Confidence 38999999999974
No 42
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=99.64 E-value=2.7e-15 Score=147.46 Aligned_cols=225 Identities=13% Similarity=0.190 Sum_probs=150.2
Q ss_pred hhHHHHHHHhCCCeEEEeCCCCC--------------c------cc------------cCCccEEEEccC--chhHHHHH
Q 037279 26 QPSLLTKASERGIDLIPIDPIKP--------------L------VE------------QGPFDCIVHKLY--GPDWTRQL 71 (327)
Q Consensus 26 ~~~l~~~~~~~gi~~~~ld~~~~--------------l------~~------------q~~~Dvilhk~~--~~~~~~~l 71 (327)
..+++++++++|++++.++.+.. + .+ ...+|+++.-.. .+. ..+
T Consensus 13 ~~~i~~a~~~~G~~vv~v~~~~~~~~~~~~~ad~~~~i~~~~~~~~~~d~~~l~~~~~~~~~d~v~~~~g~~~e~--~~~ 90 (451)
T 2vpq_A 13 AVRIIRACRDLGIQTVAIYSEGDKDALHTQIADEAYCVGPTLSKDSYLNIPNILSIATSTGCDGVHPGYGFLAEN--ADF 90 (451)
T ss_dssp HHHHHHHHHHTTCEEEEEEEGGGTTCHHHHHSSEEEEEECSSGGGTTTCHHHHHHHHHHTTCSEEECCSSTTTTC--HHH
T ss_pred HHHHHHHHHHcCCEEEEEecccccccchhhhCCEEEEcCCCCccccccCHHHHHHHHHHcCCCEEEECCCccccC--HHH
Confidence 34688999999999998863210 0 00 124566665531 111 123
Q ss_pred HHHHHhCCCCcccC-cHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEE--EEcCccchhHHHhccCCCcEEEeeccC
Q 037279 72 QQFSSQNPNVPIID-SPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQV--VVSEMKSLTSIEDLKLTFPVIAKPLVA 148 (327)
Q Consensus 72 ~~~~~~~p~v~Vid-~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~--~~~~~~~~~~~~~~~l~~P~VvKP~~~ 148 (327)
.+.++ ..|++++. ++++++.+.||..+.++|.+ .|||+|++. .+.+.+++.+. ...++||+|+||..|
T Consensus 91 ~~~~~-~~gi~~~g~~~~~~~~~~dK~~~k~~l~~-------~gip~p~~~~~~~~~~~~~~~~-~~~~g~PvvvKp~~g 161 (451)
T 2vpq_A 91 AELCE-ACQLKFIGPSYQSIQKMGIKDVAKAEMIK-------ANVPVVPGSDGLMKDVSEAKKI-AKKIGYPVIIKATAG 161 (451)
T ss_dssp HHHHH-TTTCEESSSCHHHHHHHHSHHHHHHHHHH-------TTCCBCSBCSSCBSCHHHHHHH-HHHHCSSEEEEETTC
T ss_pred HHHHH-HcCCeEECCCHHHHHHhcCHHHHHHHHHH-------cCCCcCCCcccCcCCHHHHHHH-HHhcCCcEEEEECCC
Confidence 33333 35888665 69999999999999999998 699999876 67776665543 345789999999987
Q ss_pred CCCccceeeEEEeChhhhccC-------------CCceEEEeccCCCCeEEEEEEECC---EEEEE-Eec-cCCCchhhh
Q 037279 149 DGSVKSHQMYLIFDSQGLESM-------------TAPFVLQEFVNHGGFIFKVYVAGM---NVKCV-KRK-SLPDISEEK 210 (327)
Q Consensus 149 ~Gs~~sh~m~lv~~~~~l~~l-------------~~p~vvQefI~h~g~d~KV~ViG~---~v~~~-~R~-S~~~~~~~~ 210 (327)
+ +|.++.++.+++++... ..++++||||+. ++++.|.++++ +++.. .|. +...
T Consensus 162 ~---gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g-~~e~~v~v~~~~~G~~~~~~~~~~~~~~----- 232 (451)
T 2vpq_A 162 G---GGKGIRVARDEKELETGFRMTEQEAQTAFGNGGLYMEKFIEN-FRHIEIQIVGDSYGNVIHLGERDCTIQR----- 232 (451)
T ss_dssp C---TTCSEEEESSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCCS-EEEEEEEEEECTTSCEEEEEEEEEEEEE-----
T ss_pred C---CCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEEecCC-CeEEEEEEEEcCCCCEEEEeccccchhc-----
Confidence 5 45899999999877521 468999999963 37899988864 44432 221 1100
Q ss_pred hhhcCCccccccccccccCCcccccCCCCCCCCCccccccCC-CC--cHHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCC
Q 037279 211 LKSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVE-MP--SQSFLCELARGMREALGLN-LFNFDVMRDARDS 286 (327)
Q Consensus 211 ~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~l~~lA~~~~~~lGl~-l~G~Dvi~~~~~g 286 (327)
.+. +. . +..+.. ++ ..+++.++|.++.++||+. ++++|++.+..+|
T Consensus 233 --------~~~---~~-------~------------~~~P~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~~~~~~~g 282 (451)
T 2vpq_A 233 --------RMQ---KL-------V------------EEAPSPILDDETRREMGNAAVRAAKAVNYENAGTIEFIYDLNDN 282 (451)
T ss_dssp --------TTE---EE-------E------------EEESCTTCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEETTTT
T ss_pred --------ccc---ce-------E------------EEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECCCC
Confidence 000 00 0 001111 22 2457899999999999998 4569999982245
Q ss_pred CcEEEEEEcCCCCCC
Q 037279 287 NRYLIIDVNYFPGYA 301 (327)
Q Consensus 287 ~~~~VidVN~fPg~~ 301 (327)
.++|+|||.-|+-.
T Consensus 283 -~~~viEiN~R~~~~ 296 (451)
T 2vpq_A 283 -KFYFMEMNTRIQVE 296 (451)
T ss_dssp -EEEEEEEECSCCTT
T ss_pred -CEEEEEeeCCCCCc
Confidence 48999999988753
No 43
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=99.64 E-value=1.3e-14 Score=156.95 Aligned_cols=226 Identities=12% Similarity=0.204 Sum_probs=155.3
Q ss_pred hhHHHHHHHhCCCeEEEeCCCCCcc-------c-----------------cCCccEEEEccCchhHH---HHHHH--HHH
Q 037279 26 QPSLLTKASERGIDLIPIDPIKPLV-------E-----------------QGPFDCIVHKLYGPDWT---RQLQQ--FSS 76 (327)
Q Consensus 26 ~~~l~~~~~~~gi~~~~ld~~~~l~-------~-----------------q~~~Dvilhk~~~~~~~---~~l~~--~~~ 76 (327)
-..+++++++.|++++.+|.+.... + ...+|+|+.-...+... ..+.+ .++
T Consensus 30 g~~~~~al~~~G~~vv~v~~~~~~~~~~~~~ad~~~i~p~~~e~i~~i~~~~~~D~V~p~~g~~~~l~~~~~l~~~~~le 109 (1073)
T 1a9x_A 30 GAQACKALREEGYRVINVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLE 109 (1073)
T ss_dssp HHHHHHHHHHHTCEEEEECSCTTCGGGCGGGSSEEECSCCCHHHHHHHHHHHCCSEEECSSSHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHcCCEEEEEeCCcccccCChhhCcEEEECCCCHHHHHHHHHHhCCCEEEeccCCchHHHHHHHHHHhhHHH
Confidence 3468899999999999999763210 0 02467777665432211 11221 222
Q ss_pred hCCCCccc-CcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEEEeeccCCCCccce
Q 037279 77 QNPNVPII-DSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKPLVADGSVKSH 155 (327)
Q Consensus 77 ~~p~v~Vi-d~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~VvKP~~~~Gs~~sh 155 (327)
+ .|++++ +++++++.+.||..+.++|.+ .|+|+|++.++.+.+++.+. ...++||+|+||..+.| |.
T Consensus 110 ~-~gv~~~G~~~~ai~~~~DK~~~k~~l~~-------~Gipvp~~~~v~~~~ea~~~-~~~ig~PvVvKp~~~~G---g~ 177 (1073)
T 1a9x_A 110 E-FGVTMIGATADAIDKAEDRRRFDVAMKK-------IGLETARSGIAHTMEEALAV-AADVGFPCIIRPSFTMG---GS 177 (1073)
T ss_dssp H-HTCEECSSCHHHHHHHHSHHHHHHHHHH-------TTCCCCSEEEESSHHHHHHH-HHHHCSSEEEEETTCCT---TT
T ss_pred H-cCCeeeCCCHHHHHHhhCHHHHHHHHHH-------CCcCCCCEEEECCHHHHHHH-HHHcCCCEEEEECCCCC---CC
Confidence 2 378888 899999999999999999998 69999999999987766543 35689999999999754 57
Q ss_pred eeEEEeChhhhccC---------CCceEEEeccCCCCeEEEEEEECCE---EEEE---EeccCCCchhhhhhhcCCcccc
Q 037279 156 QMYLIFDSQGLESM---------TAPFVLQEFVNHGGFIFKVYVAGMN---VKCV---KRKSLPDISEEKLKSLKGFLPF 220 (327)
Q Consensus 156 ~m~lv~~~~~l~~l---------~~p~vvQefI~h~g~d~KV~ViG~~---v~~~---~R~S~~~~~~~~~~~~~g~~~f 220 (327)
++.++.++++|... ..++++||||+. .+.+.|-|++|. ++.. .|.....+..+
T Consensus 178 Gv~iv~~~eel~~~~~~~~~~~~~~~vlvEe~I~G-~~E~~v~v~~d~~g~~v~~~~~e~~dp~~v~~g----------- 245 (1073)
T 1a9x_A 178 GGGIAYNREEFEEICARGLDLSPTKELLIDESLIG-WKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTG----------- 245 (1073)
T ss_dssp TCEEESSHHHHHHHHHHHHHHCTTSCEEEEECCTT-SEEEEEEEEECTTCCEEEEEEEEESSCTTSCGG-----------
T ss_pred ceEEeCCHHHHHHHHHHHHhhCCCCcEEEEEccCC-CeEEEEEEEEeCCCCEEEEEEEecccCCccccC-----------
Confidence 88999999887532 348999999962 379999999863 3321 12111001000
Q ss_pred ccccccccCCcccccCCCCCCCCCccccccC-CCC--cHHHHHHHHHHHHHHhCCc--EeEEEEEEeCCCCCcEEEEEEc
Q 037279 221 SRISNLIDNDKKVHDDGKKNSQGDEVDLESV-EMP--SQSFLCELARGMREALGLN--LFNFDVMRDARDSNRYLIIDVN 295 (327)
Q Consensus 221 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~l~~lA~~~~~~lGl~--l~G~Dvi~~~~~g~~~~VidVN 295 (327)
. + ....+. .++ ..++++++|.++.++||+. .+++|++.+.++|+ ++|+|||
T Consensus 246 ----~----s---------------~~~~Pa~~l~~~~~~~l~~~a~~i~~~lg~~~G~~~vdf~~~~~~g~-~~viEiN 301 (1073)
T 1a9x_A 246 ----D----S---------------ITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGR-LIVIEMN 301 (1073)
T ss_dssp ----G----S---------------CEEESCCSCCHHHHHHHHHHHHHHHHHHTCCSEEEEEEEEECTTTCC-EEEEEEE
T ss_pred ----c----E---------------EEEecCCCCCHHHHHHHHHHHHHHHHHcCcccCceEEEEEEECCCCC-EEEEEec
Confidence 0 0 000111 122 1457899999999999997 88999999864454 9999999
Q ss_pred CCCC
Q 037279 296 YFPG 299 (327)
Q Consensus 296 ~fPg 299 (327)
.-++
T Consensus 302 pR~~ 305 (1073)
T 1a9x_A 302 PRVS 305 (1073)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 4433
No 44
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}
Probab=99.63 E-value=2e-14 Score=142.82 Aligned_cols=194 Identities=16% Similarity=0.181 Sum_probs=133.3
Q ss_pred CccEEEEccCchhHHHHHHHHHHhCCCCcccCcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHH
Q 037279 54 PFDCIVHKLYGPDWTRQLQQFSSQNPNVPIIDSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIE 133 (327)
Q Consensus 54 ~~Dvilhk~~~~~~~~~l~~~~~~~p~v~Vid~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~ 133 (327)
.+|+|+. +. +.....+.+...+ -|++ -+++++++.+.||..+.++|.+ .|||+|++..+.+.+++.+.
T Consensus 102 ~id~Vip-~s-E~~l~~~a~~~e~-~Gi~-g~~~~ai~~~~DK~~~k~~l~~-------~GIpvp~~~~v~s~ee~~~~- 169 (474)
T 3vmm_A 102 GADAITT-NN-ELFIAPMAKACER-LGLR-GAGVQAAENARDKNKMRDAFNK-------AGVKSIKNKRVTTLEDFRAA- 169 (474)
T ss_dssp TCSEEEE-SC-GGGHHHHHHHHHH-TTCC-CSCHHHHHHTTCHHHHHHHHHH-------TTSCCCCEEEECSHHHHHHH-
T ss_pred CCCEEEE-CC-cccHHHHHHHHHH-cCCC-CCCHHHHHHhhCHHHHHHHHHH-------cCCCCCCeEEECCHHHHHHH-
Confidence 3455555 22 2223334444333 4777 8999999999999999999998 69999999999987766543
Q ss_pred hccCCCcEEEeeccCCCCccceeeEEEeChhhhcc-------------------CCCceEEEeccCCCC-----------
Q 037279 134 DLKLTFPVIAKPLVADGSVKSHQMYLIFDSQGLES-------------------MTAPFVLQEFVNHGG----------- 183 (327)
Q Consensus 134 ~~~l~~P~VvKP~~~~Gs~~sh~m~lv~~~~~l~~-------------------l~~p~vvQefI~h~g----------- 183 (327)
...++||+|+||..|.| |.+|.++.++++|.. ...++++||||+..-
T Consensus 170 ~~~lg~PvVVKP~~g~g---g~Gv~iv~~~eel~~a~~~~~~~~~~~~~~~a~~~~~~vlVEe~I~G~e~~~~q~~~~~~ 246 (474)
T 3vmm_A 170 LEEIGTPLILKPTYLAS---SIGVTLITDTETAEDEFNRVNDYLKSINVPKAVTFEAPFIAEEFLQGEYGDWYQTEGYSD 246 (474)
T ss_dssp HHHSCSSEEEEESSCCT---TTTCEEECCTTSHHHHHHHHHHHHTTSCCCTTCCCSCSEEEEECCCBCHHHHCSSSSSCS
T ss_pred HHHcCCCEEEEECCCCc---CceEEEECCHHHHHHHHHHHHHHHhhccccccccCCCeEEEEeCCCCceeeeeecccccc
Confidence 46789999999999754 578999999988642 246899999997432
Q ss_pred -eEEEEEEECCEEEEE--EeccCCCchhhhhhhcCCccccccccccccCCcccccCCCCCCCCCccccccCCCC--cHHH
Q 037279 184 -FIFKVYVAGMNVKCV--KRKSLPDISEEKLKSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVEMP--SQSF 258 (327)
Q Consensus 184 -~d~KV~ViG~~v~~~--~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 258 (327)
..+.+++.+++...+ .++- +.. .|.. . . ...+..++ ..++
T Consensus 247 e~sv~~v~~dg~~~~v~i~~~~-~~~------------~~~~--~--------~------------~~~Pa~l~~~~~~~ 291 (474)
T 3vmm_A 247 YISIEGIMADGEYFPIAIHDKT-PQI------------GFTE--T--------S------------HITPSILDEEAKKK 291 (474)
T ss_dssp EEEEEEEEETTEEEEEEEEEEC-CCB------------TTBC--C--------E------------EEESCCCCHHHHHH
T ss_pred eeEEEEEEECCeEEEEEEEeec-cCC------------Cccc--e--------E------------EEECCCCCHHHHHH
Confidence 345557778876432 2221 110 0000 0 0 00111122 2457
Q ss_pred HHHHHHHHHHHhCCcEeE--EEEEEeCCCCCcEEEEEEcCCCC
Q 037279 259 LCELARGMREALGLNLFN--FDVMRDARDSNRYLIIDVNYFPG 299 (327)
Q Consensus 259 l~~lA~~~~~~lGl~l~G--~Dvi~~~~~g~~~~VidVN~fPg 299 (327)
+.++|.++.+++|+.-.+ +|++.+. +| .++++|||.-++
T Consensus 292 l~~~a~~~~~alG~~g~~~~vef~~~~-dg-~~~~iEvNpR~~ 332 (474)
T 3vmm_A 292 IVEAAKKANEGLGLQNCATHTEIKLMK-NR-EPGLIESAARFA 332 (474)
T ss_dssp HHHHHHHHHHHHTCCSEEEEEEEEEEG-GG-EEEEEEEESSCC
T ss_pred HHHHHHHHHHHcCCCCccEEEEEEEcC-CC-CEEEEEEeCCCC
Confidence 899999999999999666 9999986 35 489999997665
No 45
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=99.63 E-value=3.6e-15 Score=146.48 Aligned_cols=225 Identities=14% Similarity=0.212 Sum_probs=150.3
Q ss_pred hhHHHHHHHhCCCeEEEeCCCCC--------------cc-----c------------cCCccEEEEccC--chhHHHHHH
Q 037279 26 QPSLLTKASERGIDLIPIDPIKP--------------LV-----E------------QGPFDCIVHKLY--GPDWTRQLQ 72 (327)
Q Consensus 26 ~~~l~~~~~~~gi~~~~ld~~~~--------------l~-----~------------q~~~Dvilhk~~--~~~~~~~l~ 72 (327)
..+++++++++|++++.++.+.. +. + ...+|+++.-.. .+. . .+.
T Consensus 14 ~~~~~~a~~~~G~~vv~v~~~~~~~~~~~~~ad~~~~~~p~~~~~~~d~~~l~~~~~~~~~d~v~~~~g~~~e~-~-~~~ 91 (451)
T 1ulz_A 14 AVRIIRACKELGIPTVAIYNEVESTARHVKLADEAYMIGTDPLDTYLNKQRIINLALEVGADAIHPGYGFLAEN-A-EFA 91 (451)
T ss_dssp HHHHHHHHHHHTCCEEEEECGGGTTCHHHHHSSEEEECCSSTTHHHHCHHHHHHHHHHTTCCEEECCSSTTTTC-H-HHH
T ss_pred HHHHHHHHHHcCCeEEEEechhhcccchhhhCcEEEEcCCCcccccCCHHHHHHHHHHcCCCEEEECCCccccC-H-HHH
Confidence 34688899999999998874211 00 0 124566665421 111 1 222
Q ss_pred HHHHhCCCCccc-CcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEE--EEcCccchhHHHhccCCCcEEEeeccCC
Q 037279 73 QFSSQNPNVPII-DSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQV--VVSEMKSLTSIEDLKLTFPVIAKPLVAD 149 (327)
Q Consensus 73 ~~~~~~p~v~Vi-d~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~--~~~~~~~~~~~~~~~l~~P~VvKP~~~~ 149 (327)
+.+++ .|++++ +++++++.+.||..+.++|.+ .|||+|++. .+.+.+++.+. ...++||+|+||..|.
T Consensus 92 ~~~~~-~gi~~~g~~~~~~~~~~dK~~~k~~l~~-------~gip~p~~~~~~~~~~~~~~~~-~~~~g~PvvvKp~~g~ 162 (451)
T 1ulz_A 92 KMCEE-AGITFIGPHWKVIELMGDKARSKEVMKK-------AGVPVVPGSDGVLKSLEEAKAL-AREIGYPVLLKATAGG 162 (451)
T ss_dssp HHHHH-TTCEESSSCHHHHHHHHSHHHHHHHHHH-------TTCCBCCBCSSSCCCHHHHHHH-HHHHCSSEEEEECSSS
T ss_pred HHHHH-CCCeEECcCHHHHHHhcCHHHHHHHHHH-------cCCCCCCCcccccCCHHHHHHH-HHHcCCCEEEEECCCC
Confidence 33333 478866 789999999999999999998 699999997 67776665543 3457999999999975
Q ss_pred CCccceeeEEEeChhhhccC-------------CCceEEEeccCCCCeEEEEEEECC---EEEE-EEeccCCCchhhhhh
Q 037279 150 GSVKSHQMYLIFDSQGLESM-------------TAPFVLQEFVNHGGFIFKVYVAGM---NVKC-VKRKSLPDISEEKLK 212 (327)
Q Consensus 150 Gs~~sh~m~lv~~~~~l~~l-------------~~p~vvQefI~h~g~d~KV~ViG~---~v~~-~~R~S~~~~~~~~~~ 212 (327)
.|.++.++.+++++... ..++++||||+. ++++.|.++++ +++. ..|.. + +...
T Consensus 163 ---gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g-~~e~~v~v~~~~~G~~~~~~~~~~-~-~~~~--- 233 (451)
T 1ulz_A 163 ---GGRGIRICRNEEELVKNYEQASREAEKAFGRGDLLLEKFIEN-PKHIEYQVLGDKHGNVIHLGERDC-S-IQRR--- 233 (451)
T ss_dssp ---SCCSCEEESSHHHHHHHHHHHHHHHHHTTSCCCEEEEECCCS-CEEEEEEEEECTTSCEEEEEEEEE-E-EEET---
T ss_pred ---CCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCeEEEEEcccC-CeEEEEEEEEcCCCCEEEEeeeec-c-cccc---
Confidence 45899999999877521 468999999963 48999999874 3433 22211 0 0000
Q ss_pred hcCCccccccccccccCCcccccCCCCCCCCCccccccCC-CC--cHHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCc
Q 037279 213 SLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVE-MP--SQSFLCELARGMREALGLN-LFNFDVMRDARDSNR 288 (327)
Q Consensus 213 ~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~l~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~ 288 (327)
+ .+. . +..+.. ++ ..+++.++|.++.++||+. ++++|++.+. +|+
T Consensus 234 --------~--~~~-------~------------~~~P~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~~~~~-~g~- 282 (451)
T 1ulz_A 234 --------N--QKL-------V------------EIAPSLILTPEKREYYGNIVTKAAKEIGYYNAGTMEFIADQ-EGN- 282 (451)
T ss_dssp --------T--EEE-------E------------EEESCSSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECT-TCC-
T ss_pred --------c--ccc-------e------------eECCcccCCHHHHHHHHHHHHHHHHHcCCCcceEEEEEEeC-CCC-
Confidence 0 000 0 000111 22 2457889999999999998 5679999975 353
Q ss_pred EEEEEEcCCCCCC
Q 037279 289 YLIIDVNYFPGYA 301 (327)
Q Consensus 289 ~~VidVN~fPg~~ 301 (327)
++|+|||.-|+-.
T Consensus 283 ~~viEiN~R~~~~ 295 (451)
T 1ulz_A 283 LYFIEMNTRIQVE 295 (451)
T ss_dssp EEEEEEECSCCTT
T ss_pred EEEEEeeCCCCcc
Confidence 8999999988743
No 46
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=99.63 E-value=3.2e-15 Score=140.46 Aligned_cols=191 Identities=16% Similarity=0.196 Sum_probs=114.3
Q ss_pred CccEEEEccCch-hHHHHHHHHHHhCCCCc-ccCcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhH
Q 037279 54 PFDCIVHKLYGP-DWTRQLQQFSSQNPNVP-IIDSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTS 131 (327)
Q Consensus 54 ~~Dvilhk~~~~-~~~~~l~~~~~~~p~v~-Vid~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~ 131 (327)
.+|+++.-.-.. ...+.+.+.+.. .|++ +.++++++..+.||+.+.++|.+ .|||+|+++. +.+++.+
T Consensus 72 ~~d~vi~~~~~~~~~~a~~~~~l~~-~g~~~~~~~~~~~~~~~dK~~~~~~l~~-------~gip~p~~~~--~~~~~~~ 141 (331)
T 2pn1_A 72 GVTALLTLIDPELGLLAQATERFQA-IGVTVIVSPYAACELCFDKYTMYEYCLR-------QGIAHARTYA--TMASFEE 141 (331)
T ss_dssp TCCEEEESSHHHHHHHHHTHHHHHT-TTCEECCCCHHHHHHHHBHHHHHHHHHH-------HTCCCCCEES--SHHHHHH
T ss_pred CCCEEEeCCchhHHHHHHHHHHHHh-CCcEEecCCHHHHHHhhCHHHHHHHHHH-------cCCCCCcEEe--cHHHhhh
Confidence 456666532111 123333444433 4775 46889999999999999999998 5999999975 3333333
Q ss_pred HH-hccCCCcEEEeeccCCCCccceeeEEEeChhhhccC---CCceEEEeccCCCCeEEEEEEEC----CEEEE-EEecc
Q 037279 132 IE-DLKLTFPVIAKPLVADGSVKSHQMYLIFDSQGLESM---TAPFVLQEFVNHGGFIFKVYVAG----MNVKC-VKRKS 202 (327)
Q Consensus 132 ~~-~~~l~~P~VvKP~~~~Gs~~sh~m~lv~~~~~l~~l---~~p~vvQefI~h~g~d~KV~ViG----~~v~~-~~R~S 202 (327)
.+ ...++||+|+||..|.| |.++.++.+.+++... ..++++||||+ |+.+.|.+++ ++++. ..+..
T Consensus 142 ~~~~~~~~~P~vvKp~~g~g---~~gv~~v~~~~el~~~~~~~~~~lvee~i~--G~e~~v~~~~d~~~G~~~~~~~~~~ 216 (331)
T 2pn1_A 142 ALAAGEVQLPVFVKPRNGSA---SIEVRRVETVEEVEQLFSKNTDLIVQELLV--GQELGVDAYVDLISGKVTSIFIKEK 216 (331)
T ss_dssp HHHTTSSCSCEEEEESBC--------------------------CEEEEECCC--SEEEEEEEEECTTTCCEEEEEEEEE
T ss_pred hhhcccCCCCEEEEeCCCCC---CCCeEEeCCHHHHHHHHHhCCCeEEEecCC--CcEEEEEEEEecCCCeEEEEEEEEE
Confidence 22 25789999999999753 5899999999888654 35899999996 6899988886 45543 33322
Q ss_pred CCCchhhhhhhcCCccccccccccccCCcccccCCCCCCCCCccccccCCCCcHHHHHHHHHHHHHHhCC-cEeEEEEEE
Q 037279 203 LPDISEEKLKSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVEMPSQSFLCELARGMREALGL-NLFNFDVMR 281 (327)
Q Consensus 203 ~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lA~~~~~~lGl-~l~G~Dvi~ 281 (327)
+. ... |. . ..... +..+++.++|.++.++||+ .++++|++.
T Consensus 217 ~~-~~~-------g~----------------~------------~~~~~--~~~~~~~~~~~~~~~~lg~~G~~~vd~~~ 258 (331)
T 2pn1_A 217 LT-MRA-------GE----------------T------------DKSRS--VLRDDVFELVEHVLDGSGLVGPLDFDLFD 258 (331)
T ss_dssp EE-EET-------TE----------------E------------EEEEE--ECCHHHHHHHHHHHTTTCCCEEEEEEEEE
T ss_pred EE-ecC-------Cc----------------e------------eEeEE--eccHHHHHHHHHHHHHhCCcceEEEEEEE
Confidence 10 000 00 0 00000 1246789999999999999 588999995
Q ss_pred eCCCCCcEEEEEEcC-CCCC
Q 037279 282 DARDSNRYLIIDVNY-FPGY 300 (327)
Q Consensus 282 ~~~~g~~~~VidVN~-fPg~ 300 (327)
+ +| .++++|||. +||.
T Consensus 259 ~--~g-~~~~iEiN~R~~g~ 275 (331)
T 2pn1_A 259 V--AG-TLYLSEINPRFGGG 275 (331)
T ss_dssp E--TT-EEEEEEEESSCCTT
T ss_pred c--CC-CEEEEEEeCCCCCc
Confidence 4 34 489999999 5664
No 47
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=99.62 E-value=1.1e-14 Score=143.47 Aligned_cols=201 Identities=8% Similarity=0.051 Sum_probs=132.0
Q ss_pred CccEEEEccCchhHHHHHHHHHHhCCCCccc-CcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHH
Q 037279 54 PFDCIVHKLYGPDWTRQLQQFSSQNPNVPII-DSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSI 132 (327)
Q Consensus 54 ~~Dvilhk~~~~~~~~~l~~~~~~~p~v~Vi-d~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~ 132 (327)
.+|+++.-. +....+.+.+.+.+ .|++++ ++.++++++.||..+.++|.+ .|||+|++..+.+.+++.+.
T Consensus 83 ~id~vv~g~-E~~l~~~~~~~l~~-~Gi~~~Gp~~~a~~~~~dK~~~k~~l~~-------~GIp~p~~~~~~~~~ea~~~ 153 (442)
T 3lp8_A 83 KIELVVIGP-ETPLMNGLSDALTE-EGILVFGPSKAAARLESSKGFTKELCMR-------YGIPTAKYGYFVDTNSAYKF 153 (442)
T ss_dssp TCCEEEECS-HHHHHTTHHHHHHH-TTCEEESCCHHHHHHHHCHHHHHHHHHH-------HTCCBCCEEEESSHHHHHHH
T ss_pred CCCEEEECC-cHHHHHHHHHHHHh-cCCcEecCCHHHHHHhhCHHHHHHHHHH-------CCCCCCCEEEECCHHHHHHH
Confidence 567777632 11112233444444 489888 999999999999999999998 59999999999987766554
Q ss_pred HhccCCCcEEEeeccCCCCccceeeEEEeChhhhccC-------------CCceEEEeccCCCCeEEEEEEEC--CEEEE
Q 037279 133 EDLKLTFPVIAKPLVADGSVKSHQMYLIFDSQGLESM-------------TAPFVLQEFVNHGGFIFKVYVAG--MNVKC 197 (327)
Q Consensus 133 ~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~~~~~l~~l-------------~~p~vvQefI~h~g~d~KV~ViG--~~v~~ 197 (327)
...++||+|+||..+. .++++.++.+.+++... ..++++||||+ |.++.|.++. +.++.
T Consensus 154 -~~~~g~PvVvKp~~~~---gg~GV~iv~~~eel~~a~~~~~~~~~~g~~~~~vlvEe~i~--G~E~sv~~~~dg~~~~~ 227 (442)
T 3lp8_A 154 -IDKHKLPLVVKADGLA---QGKGTVICHTHEEAYNAVDAMLVHHKFGEAGCAIIIEEFLE--GKEISFFTLVDGSNPVI 227 (442)
T ss_dssp -HHHSCSSEEEEESSCC---TTTSEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC--SEEEEEEEEEESSCEEE
T ss_pred -HHHcCCcEEEeECCCC---CCCeEEEeCCHHHHHHHHHHHHhhcccCCCCCeEEEEEeec--CcEEEEEEEECCCeEEE
Confidence 3568999999999764 46899999999887421 25899999997 7899988884 34432
Q ss_pred --EEeccCCCchhhhhhhcCCccccccccccccCCcccccCCCCCCCCCccccccCC-CCc--HHHHHHH----HHHHHH
Q 037279 198 --VKRKSLPDISEEKLKSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVE-MPS--QSFLCEL----ARGMRE 268 (327)
Q Consensus 198 --~~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~l~~l----A~~~~~ 268 (327)
..+.--+ . +.++. +..++. .+. -.+.+ ++. .+++.+. +.++.+
T Consensus 228 ~~~~~~~~~-~-----------~~~~~--g~~~gg-----------~g~---~~P~~~l~~~~~~~i~~~i~~~a~~~~~ 279 (442)
T 3lp8_A 228 LGVAQDYKT-I-----------GDNNK--GPNTGG-----------MGS---YSKPNIITQEMEHIIIQKIIYPTIKAMF 279 (442)
T ss_dssp EEEEEECCE-E-----------EGGGE--EEECSC-----------SEE---EECTTSSCHHHHHHHHHHTHHHHHHHHH
T ss_pred eEEeEeeee-c-----------ccCCC--CCCCCC-----------cEE---EeeCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 2221110 0 00100 000000 000 11111 221 2344444 677778
Q ss_pred HhCCcE---eEEEEEEeCCCCCcEEEEEEcCCCCC
Q 037279 269 ALGLNL---FNFDVMRDARDSNRYLIIDVNYFPGY 300 (327)
Q Consensus 269 ~lGl~l---~G~Dvi~~~~~g~~~~VidVN~fPg~ 300 (327)
++|+.+ +.+|++.+.+ | ++|+|+|.-||-
T Consensus 280 a~g~~~~G~~~ve~~~~~~-g--~~viEiN~R~g~ 311 (442)
T 3lp8_A 280 NMNIQFRGLLFAGIIIKKN-E--PKLLEYNVRFGD 311 (442)
T ss_dssp HTTCCCEEEEEEEEEEETT-E--EEEEEEESSCCT
T ss_pred HcCCCceeEEEEEEEEeCC-C--eEEEEEecCCCC
Confidence 999954 4599999853 3 899999999993
No 48
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=99.62 E-value=6.9e-15 Score=145.01 Aligned_cols=224 Identities=12% Similarity=0.199 Sum_probs=150.1
Q ss_pred hhHHHHHHHhCCCeEEEeCCCCCc---------------------cc------------cCCccEEEEcc--CchhHHHH
Q 037279 26 QPSLLTKASERGIDLIPIDPIKPL---------------------VE------------QGPFDCIVHKL--YGPDWTRQ 70 (327)
Q Consensus 26 ~~~l~~~~~~~gi~~~~ld~~~~l---------------------~~------------q~~~Dvilhk~--~~~~~~~~ 70 (327)
..+++++++++|++++.+|.+... .. ...+|+++.-. ..+. . .
T Consensus 18 ~~~i~~a~~~~G~~vv~v~~~~~~~~~~~~~ad~~~~i~~~~~~~~~y~d~~~l~~~~~~~~id~v~~~~g~~~E~-~-~ 95 (461)
T 2dzd_A 18 AIRVFRACTELGIRTVAIYSKEDVGSYHRYKADEAYLVGEGKKPIEAYLDIEGIIEIAKAHDVDAIHPGYGFLSEN-I-Q 95 (461)
T ss_dssp HHHHHHHHHHHTCEEEEEECGGGTTCTHHHHSSSEEECSTTSCTTGGGTCHHHHHHHHHHTTCCEEECCSSSSTTC-H-H
T ss_pred HHHHHHHHHHcCCEEEEEECCcccccchhhhCCEEEEcCCCCCccccccCHHHHHHHHHHhCCCEEEECCCccccC-H-H
Confidence 346889999999999998754210 00 02356666543 1111 1 2
Q ss_pred HHHHHHhCCCCccc-CcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEE--EEcCccchhHHHhccCCCcEEEeecc
Q 037279 71 LQQFSSQNPNVPII-DSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQV--VVSEMKSLTSIEDLKLTFPVIAKPLV 147 (327)
Q Consensus 71 l~~~~~~~p~v~Vi-d~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~--~~~~~~~~~~~~~~~l~~P~VvKP~~ 147 (327)
+.+.+++ .|++++ +++++++.+.||..+.++|.+ .|||+|++. .+.+.+++.+. ...++||+|+||..
T Consensus 96 ~~~~~~~-~gi~~~g~~~~~~~~~~dK~~~k~~l~~-------~Gip~p~~~~~~~~~~~~~~~~-~~~~g~PvvvKp~~ 166 (461)
T 2dzd_A 96 FAKRCRE-EGIIFIGPNENHLDMFGDKVKARHAAVN-------AGIPVIPGSDGPVDGLEDVVAF-AEAHGYPIIIKAAL 166 (461)
T ss_dssp HHHHHHH-TTCEESSCCHHHHHHTTSHHHHHHHHHH-------TTCCBCCBCSSCCSSHHHHHHH-HHHHCSCEEEEEST
T ss_pred HHHHHHH-cCCEEECCCHHHHHHhhCHHHHHHHHHH-------cCCCCCCCcccCcCCHHHHHHH-HHhcCCcEEEEeCC
Confidence 3333333 378765 779999999999999999998 699999997 67776665543 34578999999999
Q ss_pred CCCCccceeeEEEeChhhhccC-------------CCceEEEeccCCCCeEEEEEEECC---EEEE-EEeccCCCchhhh
Q 037279 148 ADGSVKSHQMYLIFDSQGLESM-------------TAPFVLQEFVNHGGFIFKVYVAGM---NVKC-VKRKSLPDISEEK 210 (327)
Q Consensus 148 ~~Gs~~sh~m~lv~~~~~l~~l-------------~~p~vvQefI~h~g~d~KV~ViG~---~v~~-~~R~S~~~~~~~~ 210 (327)
|. +|.++.++.+.++|... ..++++||||+. ++.+.|.++++ +++. ..|.. +....
T Consensus 167 g~---gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g-~~e~~v~v~~~~~G~~~~~~~~~~-~~~~~-- 239 (461)
T 2dzd_A 167 GG---GGRGMRIVRSKSEVKEAFERAKSEAKAAFGSDEVYVEKLIEN-PKHIEVQILGDYEGNIVHLYERDC-SVQRR-- 239 (461)
T ss_dssp TC---SSSSEEEECCGGGHHHHHHHHHHHHHHHTSCCCEEEEECCCS-CEEEEEEEEECTTCCEEEEEEEEE-EEEET--
T ss_pred CC---CCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEECCCC-CeEEEEEEEEcCCCCEEEEEeccc-ccccc--
Confidence 75 45899999999887521 468999999973 48899988864 3443 32311 00000
Q ss_pred hhhcCCccccccccccccCCcccccCCCCCCCCCccccccCCCC--cHHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCC
Q 037279 211 LKSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVEMP--SQSFLCELARGMREALGLNLFN-FDVMRDARDSN 287 (327)
Q Consensus 211 ~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~lA~~~~~~lGl~l~G-~Dvi~~~~~g~ 287 (327)
+ .+.... . +. ..++ ..+++.++|.++.+++|+..++ +|++.+. |
T Consensus 240 ----------~--~~~~~~----~-------------P~-~~l~~~~~~~i~~~a~~~~~~lg~~g~~~ve~~~~~--~- 286 (461)
T 2dzd_A 240 ----------H--QKVVEV----A-------------PS-VSLSDELRQRICEAAVQLMRSVGYVNAGTVEFLVSG--D- 286 (461)
T ss_dssp ----------T--EEEEEE----E-------------SC-TTSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEET--T-
T ss_pred ----------c--cceEEE----C-------------Cc-ccCCHHHHHHHHHHHHHHHHHcCCCcceEEEEEEeC--C-
Confidence 0 000000 0 00 0111 2457899999999999999654 9999985 3
Q ss_pred cEEEEEEcCCCCC
Q 037279 288 RYLIIDVNYFPGY 300 (327)
Q Consensus 288 ~~~VidVN~fPg~ 300 (327)
+++|+|||.-|+.
T Consensus 287 ~~~viEiN~R~~~ 299 (461)
T 2dzd_A 287 EFYFIEVNPRIQV 299 (461)
T ss_dssp EEEEEEEESSCCG
T ss_pred CEEEEEEECCCCC
Confidence 4899999998874
No 49
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=99.62 E-value=2e-14 Score=139.76 Aligned_cols=202 Identities=10% Similarity=0.048 Sum_probs=129.4
Q ss_pred CccEEEEccCchhHHHHHHHHHHhCCCCccc-CcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHH
Q 037279 54 PFDCIVHKLYGPDWTRQLQQFSSQNPNVPII-DSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSI 132 (327)
Q Consensus 54 ~~Dvilhk~~~~~~~~~l~~~~~~~p~v~Vi-d~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~ 132 (327)
.+|+|+.-.- ....+.+.+.+++ .|++++ +++++++.+.||..+.++|.+ .|||+|++..+.+.+++.+.
T Consensus 61 ~~d~v~~~~E-~~~~~~~~~~l~~-~gi~~~g~~~~~~~~~~dK~~~~~~l~~-------~gip~p~~~~~~~~~~~~~~ 131 (417)
T 2ip4_A 61 GIDLTLVGPE-APLVEGIADAFQA-RGLLLFGPTQKAAMIEGSKAFAKGLMER-------YGIPTARYRVFREPLEALAY 131 (417)
T ss_dssp TCCEEEECSS-HHHHTTHHHHHHH-HTCCEESCCHHHHHHHHCHHHHHHHHHH-------TCCCBCCEEEESSHHHHHHH
T ss_pred CCCEEEECCc-hHHHHHHHHHHHH-CCCCEECccHHHHHHHcCHHHHHHHHHH-------cCCCCCCeeeeCCHHHHHHH
Confidence 4577766421 1111222232222 378888 899999999999999999998 69999999999887766554
Q ss_pred HhccCCCcEEEeeccCCCCccceeeEEEeChhhhcc---------CCCceEEEeccCCCCeEEEEEEECC-E-EEEE--E
Q 037279 133 EDLKLTFPVIAKPLVADGSVKSHQMYLIFDSQGLES---------MTAPFVLQEFVNHGGFIFKVYVAGM-N-VKCV--K 199 (327)
Q Consensus 133 ~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~~~~~l~~---------l~~p~vvQefI~h~g~d~KV~ViG~-~-v~~~--~ 199 (327)
...++||+|+||..+. +|+++.++.+++++.. ...++++||||+ |.++.|.++.+ + ++.. .
T Consensus 132 -~~~~~~P~vvKp~~~~---gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~lvEe~i~--g~E~sv~~~~~G~~~~~~~~~ 205 (417)
T 2ip4_A 132 -LEEVGVPVVVKDSGLA---AGKGVTVAFDLHQAKQAVANILNRAEGGEVVVEEYLE--GEEATVLALTDGETILPLLPS 205 (417)
T ss_dssp -HHHHCSSEEEECTTSC---SSTTCEEESCHHHHHHHHHHHTTSSSCCCEEEEECCC--SCEEEEEEEESSSCEEECCCB
T ss_pred -HHHcCCCEEEEECCCC---CCCCEEEeCCHHHHHHHHHHHHhhccCCeEEEEECcc--CcEEEEEEEEeCCEEEEcchh
Confidence 3457899999999874 4589999999988752 126899999997 78999998843 3 3321 1
Q ss_pred eccCCCchhhhhhhcCCccccccccccccCCcccccCCCCCCCCCccccccCCCCc--HHHH-HHHHHHHHHHh---CCc
Q 037279 200 RKSLPDISEEKLKSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVEMPS--QSFL-CELARGMREAL---GLN 273 (327)
Q Consensus 200 R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l-~~lA~~~~~~l---Gl~ 273 (327)
|..-+.. .++ .+..... .+ ...+..++. .+.+ ++++.++.++| |+.
T Consensus 206 ~~~~~~~------------~~~--~~~~~g~-----------~~---~~~p~~l~~~~~~~~~~~~~~~~~~~l~~~g~~ 257 (417)
T 2ip4_A 206 QDHKRLL------------DGD--QGPMTGG-----------MG---AVAPYPMDEATLRRVEEEILGPLVRGLRAEGVV 257 (417)
T ss_dssp EECCEEE------------TTT--EEEECSC-----------SE---EEESCCCCHHHHHHHHHHTHHHHHHHHHHTTCC
T ss_pred eechhhc------------cCC--CCCcCCC-----------Ce---eeeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 2110000 000 0000000 00 011222222 2233 55677777776 444
Q ss_pred ---EeEEEEEEeCCCCCcEEEEEEcCCCCCC
Q 037279 274 ---LFNFDVMRDARDSNRYLIIDVNYFPGYA 301 (327)
Q Consensus 274 ---l~G~Dvi~~~~~g~~~~VidVN~fPg~~ 301 (327)
++++|++.+. +| ++|+|||.-||-.
T Consensus 258 ~~G~~~ve~~~~~-~g--~~viEiN~R~g~~ 285 (417)
T 2ip4_A 258 YRGVVYAGLMLTR-EG--PKVLEFNARFGDP 285 (417)
T ss_dssp CCEEEEEEEEECS-SC--EEEEEEESSCCTT
T ss_pred ceEEEEEEEEEeC-CC--eEEEEEecCCCCc
Confidence 5679999975 34 8999999999854
No 50
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=99.62 E-value=1.6e-14 Score=141.79 Aligned_cols=204 Identities=10% Similarity=0.034 Sum_probs=130.7
Q ss_pred CccEEEEccCchhHHHHHHHHHHhCCCCccc-CcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHH
Q 037279 54 PFDCIVHKLYGPDWTRQLQQFSSQNPNVPII-DSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSI 132 (327)
Q Consensus 54 ~~Dvilhk~~~~~~~~~l~~~~~~~p~v~Vi-d~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~ 132 (327)
.+|+++.-. +......+.+.+.+ .|++++ ++.++++++.||..+.++|.+ .|||+|++..+.+.+++.+.
T Consensus 67 ~id~vv~g~-e~~l~~~~~~~l~~-~Gi~~~Gp~~~a~~~~~dK~~~k~~l~~-------~GIptp~~~~~~~~~ea~~~ 137 (431)
T 3mjf_A 67 DIGLTIVGP-EAPLVIGVVDAFRA-AGLAIFGPTQAAAQLEGSKAFTKDFLAR-------HNIPSAEYQNFTDVEAALAY 137 (431)
T ss_dssp TEEEEEECS-HHHHHTTHHHHHHH-TTCCEESCCHHHHHHHHCHHHHHHHHHH-------TTCSBCCEEEESCHHHHHHH
T ss_pred CcCEEEECC-chHHHHHHHHHHHh-cCCCeeCCCHHHHHHhhCHHHHHHHHHH-------cCCCCCCeEeeCCHHHHHHH
Confidence 456666532 11112233444444 379888 999999999999999999998 69999999999987766554
Q ss_pred HhccCCCcEEEeeccCCCCccceeeEEEeChhhhccC-------------CCceEEEeccCCCCeEEEEEEECC--EEEE
Q 037279 133 EDLKLTFPVIAKPLVADGSVKSHQMYLIFDSQGLESM-------------TAPFVLQEFVNHGGFIFKVYVAGM--NVKC 197 (327)
Q Consensus 133 ~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~~~~~l~~l-------------~~p~vvQefI~h~g~d~KV~ViG~--~v~~ 197 (327)
...++||+|+||..+. .+.++.++.+.+++... ..++++||||+ |.++.|.++.| +++.
T Consensus 138 -~~~~g~PvVvKp~~~~---gg~GV~iv~~~~el~~a~~~~~~~~~~g~~~~~vlvEe~i~--G~E~sv~~~~dg~~~~~ 211 (431)
T 3mjf_A 138 -VRQKGAPIVIKADGLA---AGKGVIVAMTQEEAETAVNDMLAGNAFGDAGHRIVVEEFLD--GEEASFIVMVDGENVLP 211 (431)
T ss_dssp -HHHHCSSEEEEESSSC---TTCSEEEECSHHHHHHHHHHHHTTHHHHCCCCCEEEEECCC--SEEEEEEEEEESSCEEE
T ss_pred -HHHcCCeEEEEECCCC---CCCcEEEeCCHHHHHHHHHHHHhhccccCCCCeEEEEEeeC--CcEEEEEEEEcCCEEEE
Confidence 3457999999998764 46899999999887421 35899999997 79999998843 4432
Q ss_pred EE--eccCCCchhhhhhhcCCccccccccccccCCcccccCCCCCCCCCccccccCC-CCc--HHHHHHH----HHHHHH
Q 037279 198 VK--RKSLPDISEEKLKSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVE-MPS--QSFLCEL----ARGMRE 268 (327)
Q Consensus 198 ~~--R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~l~~l----A~~~~~ 268 (327)
.. +.- +. .+.++. ...++. .+. -.+.+ ++. .+.+.+. +.++.+
T Consensus 212 ~~~~~~~-~~-----------~~~~~~--g~~~gg-----------~g~---~~P~~~l~~~~~~~i~~~i~~~~~~~~~ 263 (431)
T 3mjf_A 212 MATSQDH-KR-----------VGDGDT--GPNTGG-----------MGA---YSPAPVVTDDVHQRVMDQVIWPTVRGMA 263 (431)
T ss_dssp CCCBEEC-CE-----------EETTTE--EEECSC-----------SEE---EESCTTSCHHHHHHHHHHTHHHHHHHHH
T ss_pred EEeeEec-ee-----------cccCCC--CCCCCC-----------ceE---EeeCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 11 100 00 001110 000000 010 11121 221 2233332 456667
Q ss_pred HhCCcEe---EEEEEEeCCCCCcEEEEEEcCCCCCCC
Q 037279 269 ALGLNLF---NFDVMRDARDSNRYLIIDVNYFPGYAK 302 (327)
Q Consensus 269 ~lGl~l~---G~Dvi~~~~~g~~~~VidVN~fPg~~g 302 (327)
++|+.+. .+|++.+. +| +++|+|+|.-||...
T Consensus 264 ~~g~~~~G~~~ve~~~~~-~g-~~~viEiN~R~G~~~ 298 (431)
T 3mjf_A 264 AEGNIYTGFLYAGLMISA-DG-QPKVIEFNCRFGDPE 298 (431)
T ss_dssp HTTCCCEEEEEEEEEECT-TS-CEEEEEECGGGSTTT
T ss_pred HcCCCcEEEEEEEEEEeC-CC-CeEEEEEecCCCCcH
Confidence 8898654 49999985 35 389999999998443
No 51
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=99.61 E-value=2e-14 Score=139.95 Aligned_cols=243 Identities=10% Similarity=0.038 Sum_probs=151.7
Q ss_pred CceEEEEEeCCccccccchhHHHHHHHhCCCeEEEeCCCC--C-----c--c------ccCCccEEEEccCchhHHHHHH
Q 037279 8 QRFRIGYALAPKKGQSLIQPSLLTKASERGIDLIPIDPIK--P-----L--V------EQGPFDCIVHKLYGPDWTRQLQ 72 (327)
Q Consensus 8 ~~~~vG~~~~~~k~~~~~~~~l~~~~~~~gi~~~~ld~~~--~-----l--~------~q~~~Dvilhk~~~~~~~~~l~ 72 (327)
+..+|++.-+--++..+.| +++++.| ++..++-+- . + + ....+|+|+.-.-+. ..+.+.
T Consensus 14 ~~~~vlviG~Ggr~~a~a~----~~a~~~g-~v~~~~~np~~~~~d~~id~~~l~~~~~~~~~d~V~~~~E~~-~~a~~~ 87 (412)
T 1vkz_A 14 KAVRVHILGSGGREHAIGW----AFAKQGY-EVHFYPGNAGTKRDGTNHPYEGEKTLKAIPEEDIVIPGSEEF-LVEGVS 87 (412)
T ss_dssp --CEEEEEECSHHHHHHHH----HHHHTTC-EEEEEECCTTGGGTSEECCCCTHHHHHTSCSSCEECCSSGGG-TCC---
T ss_pred ccCEEEEECCCHHHHHHHH----HHHhCCC-CEEEECCChhhhcccccCCHHHHHHHHHHcCCCEEEECCcHH-HHHHHH
Confidence 4557788888755543332 4467788 877774221 0 0 0 123567777632111 111121
Q ss_pred HHHHhCCCCcccCcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEEEeeccCCCCc
Q 037279 73 QFSSQNPNVPIIDSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKPLVADGSV 152 (327)
Q Consensus 73 ~~~~~~p~v~Vid~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~VvKP~~~~Gs~ 152 (327)
+. -+..+-+++++++++.||..+.++|.+ .|||+|++..+.+.+++.+. ...++||+|+||..+.
T Consensus 88 ~~----l~~~~g~~~~~~~~~~dK~~~k~~l~~-------~gip~p~~~~~~~~~e~~~~-~~~~g~PvvvKp~~~~--- 152 (412)
T 1vkz_A 88 NW----RSNVFGPVKEVARLEGSKVYAKRFMKK-------YGIRTARFEVAETPEELREK-IKKFSPPYVIKADGLA--- 152 (412)
T ss_dssp ------CTTBSSCCHHHHHHHHCHHHHHHHHHH-------TTCCCCCEEEESSHHHHHHH-HTTSCSSEEEEESSCC---
T ss_pred HH----hhhhhCCCHHHHHHhcCHHHHHHHHHH-------cCCCCCCEEEECCHHHHHHH-HHhcCCCEEEEeCCCC---
Confidence 21 223566999999999999999999998 69999999999887766553 3568999999999875
Q ss_pred cceeeEEEeChhhhcc-----------CC--CceEEEeccCCCCeEEEEEEEC--CEEEEEEe-ccCCCchhhhhhhcCC
Q 037279 153 KSHQMYLIFDSQGLES-----------MT--APFVLQEFVNHGGFIFKVYVAG--MNVKCVKR-KSLPDISEEKLKSLKG 216 (327)
Q Consensus 153 ~sh~m~lv~~~~~l~~-----------l~--~p~vvQefI~h~g~d~KV~ViG--~~v~~~~R-~S~~~~~~~~~~~~~g 216 (327)
+|.++.++.++++|.. .. .++++||||+ |+.+.|.++. +.+..... ......
T Consensus 153 gg~Gv~~v~~~~el~~a~~~~~~~~~~~g~~~~vlvEe~i~--G~E~sv~~~~dg~~~~~~~~~~~~~~~---------- 220 (412)
T 1vkz_A 153 RGKGVLILDSKEETIEKGSKLIIGELIKGVKGPVVIDEFLA--GNELSAMAVVNGRNFVILPFVRDYKRL---------- 220 (412)
T ss_dssp SSCCEEEESSHHHHHHHHHHHHHTSSSTTCCSCEEEEECCC--SEEEEEEEEEETTEEEECCCCEECCEE----------
T ss_pred CCCCEEEECCHHHHHHHHHHHHhhccccCCCCeEEEEECCc--CcEEEEEEEECCCEEEEeeeeEeeeec----------
Confidence 4589999999987642 11 3899999997 8999999883 32322210 000000
Q ss_pred ccccccccccccCCcccccCCCCCCCCCccccccCCCCc--HHHHHHHHHHHHHHh-----CC-cEeEEEEEEeCCCCCc
Q 037279 217 FLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVEMPS--QSFLCELARGMREAL-----GL-NLFNFDVMRDARDSNR 288 (327)
Q Consensus 217 ~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~lA~~~~~~l-----Gl-~l~G~Dvi~~~~~g~~ 288 (327)
+.++ .+..+.. .+ .-.+..++. .++++++|.++.++| +. .++++|++.+. +|
T Consensus 221 -~~~~--~~~~~g~-----------~~---~~~P~~l~~~~~~~i~~~a~~~~~~l~~~g~~~~G~~~ve~~~~~-~g-- 280 (412)
T 1vkz_A 221 -MDGD--RGPNTGG-----------MG---SWGPVEIPSDTIKKIEELFDKTLWGVEKEGYAYRGFLYLGLMLHD-GD-- 280 (412)
T ss_dssp -ETTT--EEEECSC-----------SE---EEECCCCCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEEEEET-TE--
T ss_pred -cCCC--CCCCCCC-----------ce---EEECCCCCHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEEEC-CC--
Confidence 0000 0000000 00 011222222 346789999999999 44 56679999985 33
Q ss_pred EEEEEEcCCCCCCCC
Q 037279 289 YLIIDVNYFPGYAKM 303 (327)
Q Consensus 289 ~~VidVN~fPg~~g~ 303 (327)
+||+|||.-||-.+.
T Consensus 281 ~~viEiN~R~g~~~~ 295 (412)
T 1vkz_A 281 PYILEYNVRLGDPET 295 (412)
T ss_dssp EEEEEEESSCCTTHH
T ss_pred cEEEEEecCCCCCcc
Confidence 899999999986554
No 52
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=99.60 E-value=2.3e-14 Score=155.07 Aligned_cols=240 Identities=16% Similarity=0.199 Sum_probs=150.8
Q ss_pred ceEEEEEeCCcc-cc-----ccchhHHHHHHHhCCCeEEEeCCCCCcc-------cc-----------------CCccEE
Q 037279 9 RFRIGYALAPKK-GQ-----SLIQPSLLTKASERGIDLIPIDPIKPLV-------EQ-----------------GPFDCI 58 (327)
Q Consensus 9 ~~~vG~~~~~~k-~~-----~~~~~~l~~~~~~~gi~~~~ld~~~~l~-------~q-----------------~~~Dvi 58 (327)
..+|+++.+--. .. .+....++.++++.|++++.+|.+.... +. ...|.+
T Consensus 559 ~~kVlVlG~G~~riG~~~Efd~~~~~~~~al~~~G~~vi~v~~np~~~s~~~~~ad~~~~~p~~~e~v~~i~~~e~~d~V 638 (1073)
T 1a9x_A 559 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGV 638 (1073)
T ss_dssp SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTSSTTSTTSSSEEECCCCSHHHHHHHHHHHCCSEE
T ss_pred CcEEEEecCCccccccccccchhHHHHHHHHHhcCCEEEEEecCCcccccccccccEEEeccchhhhhhhhhhhcCcceE
Confidence 446666665432 11 1122346788999999999999763211 00 124555
Q ss_pred EEccCchhHHHHHHHHHHhCCCCccc-CcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccC
Q 037279 59 VHKLYGPDWTRQLQQFSSQNPNVPII-DSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKL 137 (327)
Q Consensus 59 lhk~~~~~~~~~l~~~~~~~p~v~Vi-d~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l 137 (327)
+.-...+.. ..+.+.+.+ .|++++ +++++++.+.||..+.++|.+ .|||+|++..+.+.+++.+. ...+
T Consensus 639 i~~~g~~~~-~~la~~Le~-~Gi~i~G~~~~ai~~~~DK~~~~~ll~~-------~GIp~P~~~~~~s~eea~~~-~~~i 708 (1073)
T 1a9x_A 639 IVQYGGQTP-LKLARALEA-AGVPVIGTSPDAIDRAEDRERFQHAVER-------LKLKQPANATVTAIEMAVEK-AKEI 708 (1073)
T ss_dssp ECSSSTHHH-HTTHHHHHH-TTCCBCSSCHHHHHHHHSHHHHHHHHHH-------HTCCCCCEEECCSHHHHHHH-HHHH
T ss_pred EeecCCchH-HHHHHHHHH-CCCCeeCCCHHHHHHhhCHHHHHHHHHH-------cCcCCCCceEECCHHHHHHH-HHHc
Confidence 543322221 123333333 478888 889999999999999999998 59999999999887766543 3568
Q ss_pred CCcEEEeeccCCCCccceeeEEEeChhhhccC---------CCceEEEeccCCCCeEEEEEEECCE--EEE--EEeccCC
Q 037279 138 TFPVIAKPLVADGSVKSHQMYLIFDSQGLESM---------TAPFVLQEFVNHGGFIFKVYVAGMN--VKC--VKRKSLP 204 (327)
Q Consensus 138 ~~P~VvKP~~~~Gs~~sh~m~lv~~~~~l~~l---------~~p~vvQefI~h~g~d~KV~ViG~~--v~~--~~R~S~~ 204 (327)
+||+|+||..+. +|++|.+++++++|... ..|+++||||+.. +.+.|-++++. ++. +.+.-.+
T Consensus 709 g~PvvVKP~~~~---gG~Gv~iv~~~~el~~~~~~a~~~~~~~~vlvEefI~g~-~E~~V~~l~d~~~v~~~~i~e~~~~ 784 (1073)
T 1a9x_A 709 GYPLVVRASYVL---GGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDA-VEVDVDAICDGEMVLIGGIMEHIEQ 784 (1073)
T ss_dssp CSSEEEEC----------CEEEECSHHHHHHHHHHCC--------EEEBCCTTC-EEEEEEEEECSSCEEEEEEEEESSC
T ss_pred CCCEEEEECCCC---CCCCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEccCCC-cEEEEEEEEECCeEEEEeeEEEEec
Confidence 999999999974 46899999999887532 3589999999743 37777777443 322 2221111
Q ss_pred -CchhhhhhhcCCccccccccccccCCcccccCCCCCCCCCccccccC-CCC--cHHHHHHHHHHHHHHhCC-cEeEEEE
Q 037279 205 -DISEEKLKSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESV-EMP--SQSFLCELARGMREALGL-NLFNFDV 279 (327)
Q Consensus 205 -~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~l~~lA~~~~~~lGl-~l~G~Dv 279 (327)
++..+ ++ . ...+. .++ ..++++++|.++.++||+ .++++|+
T Consensus 785 ~g~~~g-----------d~--------------------~---~~~P~~~l~~~~~~~i~~~a~~i~~aLg~~G~~~vdf 830 (1073)
T 1a9x_A 785 AGVHSG-----------DS--------------------A---CSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQF 830 (1073)
T ss_dssp TTSCGG-----------GC--------------------C---EEESCSSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred cCCccC-----------Cc--------------------e---EEecCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEE
Confidence 00000 00 0 00111 122 246789999999999999 6899999
Q ss_pred EEeCCCCCcEEEEEEcCCCC
Q 037279 280 MRDARDSNRYLIIDVNYFPG 299 (327)
Q Consensus 280 i~~~~~g~~~~VidVN~fPg 299 (327)
+.+ +| .+||+|||.-|+
T Consensus 831 ~v~--~~-~~~viEvNpR~~ 847 (1073)
T 1a9x_A 831 AVK--NN-EVYLIEVNPRAA 847 (1073)
T ss_dssp EEC--SS-CEEEEEEECSCC
T ss_pred EEE--CC-eEEEEEEECCCc
Confidence 996 33 389999999988
No 53
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A
Probab=99.60 E-value=1.2e-14 Score=146.58 Aligned_cols=173 Identities=12% Similarity=0.171 Sum_probs=119.3
Q ss_pred CCCccc-CcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEE-----------------------------EcCccc
Q 037279 79 PNVPII-DSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVV-----------------------------VSEMKS 128 (327)
Q Consensus 79 p~v~Vi-d~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~-----------------------------~~~~~~ 128 (327)
.|++++ +++++++.+.||..+.++|.+ .|||+|++.. +.+.++
T Consensus 147 ~Gi~~iGp~~~ai~~~~DK~~~k~ll~~-------~GVPvp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~e 219 (540)
T 3glk_A 147 NGVAFLGPPSEAMWALGDKIASTVVAQT-------LQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDE 219 (540)
T ss_dssp TTCEESSCCHHHHC---CHHHHHHHHHH-------TTCCBCCBTTTTCCCCCCCTTC----CCCCCHHHHHHTSCCSHHH
T ss_pred cCCceeCCCHHHHHHhCCHHHHHHHHHH-------cCCCCCCcccccccccccccccccccccccccccccccCcCCHHH
Confidence 489988 899999999999999999998 6999999876 444444
Q ss_pred hhHHHhccCCCcEEEeeccCCCCccceeeEEEeChhhhccC---------CCceEEEeccCCCCeEEEEEEECCE---EE
Q 037279 129 LTSIEDLKLTFPVIAKPLVADGSVKSHQMYLIFDSQGLESM---------TAPFVLQEFVNHGGFIFKVYVAGMN---VK 196 (327)
Q Consensus 129 ~~~~~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~~~~~l~~l---------~~p~vvQefI~h~g~d~KV~ViG~~---v~ 196 (327)
+.+. ...++||+|+||..|+ +|.+|.++.++++|... ..++++||||+. ++.+.|-|++|. ++
T Consensus 220 a~~~-a~~igyPvVVKp~~gg---GG~Gv~iv~~~~eL~~a~~~~~~~~~~~~vlVEe~I~g-~rei~V~vl~d~~G~vv 294 (540)
T 3glk_A 220 GLEA-AERIGFPLMIKASEGG---GGKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQH-ARHLEVQILADQYGNAV 294 (540)
T ss_dssp HHHH-HHHHCSSEEEEETTCC-------EEEECSTTTHHHHHHHHHHHSTTCCEEEEECCSS-EEEEEEEEEECTTSCEE
T ss_pred HHHH-HHhcCCcEEEEECCCC---CCCCEEEECCHHHHHHHHHHHHhhccCCCEEEEEecCC-CcEEEEEEEEcCCCCEE
Confidence 4332 4568999999999875 46899999999887532 468999999952 389999999863 43
Q ss_pred E-EEec-cCCCchhhhhhhcCCccccccccccccCCcccccCCCCCCCCCccccccCC-CC--cHHHHHHHHHHHHHHhC
Q 037279 197 C-VKRK-SLPDISEEKLKSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVE-MP--SQSFLCELARGMREALG 271 (327)
Q Consensus 197 ~-~~R~-S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~l~~lA~~~~~~lG 271 (327)
. ..|. |.... + .+.. +..+.. ++ ..+++.++|.++.+++|
T Consensus 295 ~l~~rd~s~qr~--------------~--~k~i-------------------e~~Pa~~l~~~~~~~l~~~a~~~~~alG 339 (540)
T 3glk_A 295 SLFGRDCSIQRR--------------H--QKIV-------------------EEAPATIAPLAIFEFMEQCAIRLAKTVG 339 (540)
T ss_dssp EEEEEEEEEC-------------------CCSE-------------------EEESCTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred EEeceeeeeeec--------------c--cceE-------------------EecCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 3 2332 22110 0 0110 001111 11 24678999999999999
Q ss_pred Cc-EeEEEEEEeCCCCCcEEEEEEcCCCCC
Q 037279 272 LN-LFNFDVMRDARDSNRYLIIDVNYFPGY 300 (327)
Q Consensus 272 l~-l~G~Dvi~~~~~g~~~~VidVN~fPg~ 300 (327)
+. .++||++.+. +|+ +|++|||.-|+-
T Consensus 340 ~~G~~~VEf~~d~-dg~-~~~lEiNpR~~~ 367 (540)
T 3glk_A 340 YVSAGTVEYLYSQ-DGS-FHFLELNPRLQV 367 (540)
T ss_dssp CCEEEEEEEEEET-TSC-EEEEEEECSCCT
T ss_pred CccceEEEEEEcC-CCC-EEEEEEECCCCC
Confidence 96 6679999985 354 999999999984
No 54
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=99.59 E-value=1.3e-14 Score=147.54 Aligned_cols=173 Identities=12% Similarity=0.169 Sum_probs=125.2
Q ss_pred CCCccc-CcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEE-----------------------------EcCccc
Q 037279 79 PNVPII-DSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVV-----------------------------VSEMKS 128 (327)
Q Consensus 79 p~v~Vi-d~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~-----------------------------~~~~~~ 128 (327)
.|++++ +++++++.+.||..+.++|.+ .|||+|++.. +.+.++
T Consensus 163 ~Gi~~iGp~~~ai~~~~DK~~ak~ll~~-------aGVPvpp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~ee 235 (587)
T 3jrx_A 163 NGVAFLGPPSEAMWALGDKIASTVVAQT-------LQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDE 235 (587)
T ss_dssp TTCEESSCCHHHHHHHCSHHHHHHHHHH-------TTCCBCCBTTTTCCCCC------CCCCCCCCHHHHHTTSCCSHHH
T ss_pred CCCCeeCCCHHHHHHhCCHHHHHHHHHH-------cCCCCCCeecccccccccccccccccccccchhhccccccCCHHH
Confidence 489988 899999999999999999998 6999999875 344343
Q ss_pred hhHHHhccCCCcEEEeeccCCCCccceeeEEEeChhhhccC---------CCceEEEeccCCCCeEEEEEEECCE---EE
Q 037279 129 LTSIEDLKLTFPVIAKPLVADGSVKSHQMYLIFDSQGLESM---------TAPFVLQEFVNHGGFIFKVYVAGMN---VK 196 (327)
Q Consensus 129 ~~~~~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~~~~~l~~l---------~~p~vvQefI~h~g~d~KV~ViG~~---v~ 196 (327)
+.+. ...++||+|+||..|+ +|.+|.++.++++|... ..++++||||+. ++.+.|-|++|. ++
T Consensus 236 a~~~-a~~iGyPvVVKp~~Gg---GGkGv~iV~s~eEL~~a~~~a~~~~~~~~vlVEeyI~g-~rei~V~vl~D~~G~vv 310 (587)
T 3jrx_A 236 GLEA-AERIGFPLMIKASEGG---GGKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQH-ARHLEVQILADQYGNAV 310 (587)
T ss_dssp HHHH-HHHHCSSEEEEETTCC---SSSSEEEECSTTTHHHHHHHHHHHSTTCCEEEEECCCS-CEEEEEEEEECSSSCEE
T ss_pred HHHH-HHhcCCeEEEEeCCCC---CCCCeEEeCCHHHHHHHHHHHHhhccCCCEEEEEecCC-CcEEEEEEEEcCCCCEE
Confidence 3332 4568999999999975 45899999999887532 468999999963 399999999874 33
Q ss_pred E-EEec-cCCCchhhhhhhcCCccccccccccccCCcccccCCCCCCCCCccccccCC-CC--cHHHHHHHHHHHHHHhC
Q 037279 197 C-VKRK-SLPDISEEKLKSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVE-MP--SQSFLCELARGMREALG 271 (327)
Q Consensus 197 ~-~~R~-S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~l~~lA~~~~~~lG 271 (327)
. ..|. |... .+ .+... ..+.. ++ ..+++.++|.++.+++|
T Consensus 311 ~l~~rd~siqr--------------r~--qk~ie-------------------~aPa~~l~~~~~~~i~~~A~~~a~alG 355 (587)
T 3jrx_A 311 SLFGRDCSIQR--------------RH--QKIVE-------------------EAPATIAPLAIFEFMEQCAIRLAKTVG 355 (587)
T ss_dssp EEEEEEEEEES--------------SS--CEEEE-------------------EESCCSSCHHHHHHHHHHHHHHHHHHT
T ss_pred EEeeeeccccc--------------cc--cceeE-------------------ecCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 3 2232 2110 00 01100 00111 11 24678999999999999
Q ss_pred Cc-EeEEEEEEeCCCCCcEEEEEEcCCCCC
Q 037279 272 LN-LFNFDVMRDARDSNRYLIIDVNYFPGY 300 (327)
Q Consensus 272 l~-l~G~Dvi~~~~~g~~~~VidVN~fPg~ 300 (327)
+. .++||++.+. +|+ +|++|||.-|+-
T Consensus 356 y~G~~~VEfl~d~-dG~-~yflEINpRl~~ 383 (587)
T 3jrx_A 356 YVSAGTVEYLYSQ-DGS-FHFLELNPRLQV 383 (587)
T ss_dssp CCEEEEEEEEECS-SSC-EEEEEEESSCCT
T ss_pred CcceeEEEEEEeC-CCC-EEEEEEeCCCCC
Confidence 96 6679999975 354 999999999974
No 55
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=99.59 E-value=8.8e-15 Score=143.67 Aligned_cols=222 Identities=11% Similarity=0.177 Sum_probs=149.0
Q ss_pred hhHHHHHHHhCCCeEEEeCCCC----C----------c---------cc---------cCCccEEEEccC--chhHHHHH
Q 037279 26 QPSLLTKASERGIDLIPIDPIK----P----------L---------VE---------QGPFDCIVHKLY--GPDWTRQL 71 (327)
Q Consensus 26 ~~~l~~~~~~~gi~~~~ld~~~----~----------l---------~~---------q~~~Dvilhk~~--~~~~~~~l 71 (327)
..+++++++++|++++.++.+. + + .+ ...+|+++.-.. .+. . .+
T Consensus 14 ~~~~~~a~~~~G~~vv~v~~~~~~~~~~~~~ad~~~~~~p~~~~~~~~d~~~l~~~~~~~~~d~v~~~~g~~~e~-~-~~ 91 (449)
T 2w70_A 14 ALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEITGAVAIHPGYGFLSEN-A-NF 91 (449)
T ss_dssp HHHHHHHHHHHTCEEEEEEEGGGTTCHHHHHSSEEEEEECSSGGGTTTCHHHHHHHHHHHTCCEEECCSSTTTTC-H-HH
T ss_pred HHHHHHHHHHcCCeEEEEeccccccCchhhhCCEEEEcCCCCccccccCHHHHHHHHHHcCCCEEEECCCCcccC-H-HH
Confidence 3468889999999999885421 1 0 00 013566665421 111 1 22
Q ss_pred HHHHHhCCCCccc-CcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEE--EEcCccch-hHHHhccCCCcEEEeecc
Q 037279 72 QQFSSQNPNVPII-DSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQV--VVSEMKSL-TSIEDLKLTFPVIAKPLV 147 (327)
Q Consensus 72 ~~~~~~~p~v~Vi-d~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~--~~~~~~~~-~~~~~~~l~~P~VvKP~~ 147 (327)
.+.+++ .|++++ +++++++.+.||..+.++|.+ .|||+|++. .+.+.+++ .+. ...++||+|+||..
T Consensus 92 ~~~~e~-~gi~~~g~~~~~~~~~~dK~~~k~~l~~-------~gip~p~~~~~~~~~~~~~~~~~-~~~~g~PvvvKp~~ 162 (449)
T 2w70_A 92 AEQVER-SGFIFIGPKAETIRLMGDKVSAIAAMKK-------AGVPCVPGSDGPLGDDMDKNRAI-AKRIGYPVIIKASG 162 (449)
T ss_dssp HHHHHH-TTCEESSSCHHHHHHHHSHHHHHHHHHH-------HTCCBCSBCSSCCCSCHHHHHHH-HHHHCSSEEEEETT
T ss_pred HHHHHH-cCCceECCCHHHHHHhcCHHHHHHHHHH-------cCCCcCCCcccccCCHHHHHHHH-HHHhCCcEEEEECC
Confidence 333333 478865 579999999999999999998 599999997 77777666 443 34578999999999
Q ss_pred CCCCccceeeEEEeChhhhccC-------------CCceEEEeccCCCCeEEEEEEECC---EEEE-EEec-cCCCchhh
Q 037279 148 ADGSVKSHQMYLIFDSQGLESM-------------TAPFVLQEFVNHGGFIFKVYVAGM---NVKC-VKRK-SLPDISEE 209 (327)
Q Consensus 148 ~~Gs~~sh~m~lv~~~~~l~~l-------------~~p~vvQefI~h~g~d~KV~ViG~---~v~~-~~R~-S~~~~~~~ 209 (327)
|. +|.++.++.+.+++... ..++++||||+. ++.+.|.++++ +++. ..|. +.. ..
T Consensus 163 g~---gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g-~~e~~v~~~~~~~G~~~~~~~~~~~~~--~~- 235 (449)
T 2w70_A 163 GG---GGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLEN-PRHVEIQVLADGQGNAIYLAERDCSMQ--RR- 235 (449)
T ss_dssp CC---TTTTCEEECSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCSS-CEEEEEEEEECTTSCEEEEEEEEEEEE--ET-
T ss_pred CC---CCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEeccCC-CeEEEEEEEEcCCCCEEEEeceecccc--cC-
Confidence 75 45889999999877531 468999999963 48899988863 4543 2231 110 00
Q ss_pred hhhhcCCccccccccccccCCcccccCCCCCCCCCccccccCC-CC--cHHHHHHHHHHHHHHhCCc-EeEEEEEEeCCC
Q 037279 210 KLKSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVE-MP--SQSFLCELARGMREALGLN-LFNFDVMRDARD 285 (327)
Q Consensus 210 ~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~l~~lA~~~~~~lGl~-l~G~Dvi~~~~~ 285 (327)
+ .+... ..+.. ++ ..+++.++|.++.++||+. ++++|++.+.
T Consensus 236 ----------~---~~~~~-------------------~~p~~~l~~~~~~~i~~~a~~~~~~lg~~G~~~ve~~~~~-- 281 (449)
T 2w70_A 236 ----------H---QKVVE-------------------EAPAPGITPELRRYIGERCAKACVDIGYRGAGTFEFLFEN-- 281 (449)
T ss_dssp ----------T---EEEEE-------------------EESCTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEET--
T ss_pred ----------C---cceee-------------------eCCcccCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEEC--
Confidence 0 00000 00111 11 2457889999999999997 6779999985
Q ss_pred CCcEEEEEEcCCCCC
Q 037279 286 SNRYLIIDVNYFPGY 300 (327)
Q Consensus 286 g~~~~VidVN~fPg~ 300 (327)
| .++|+|||.-|+-
T Consensus 282 ~-~~~viEiN~R~~~ 295 (449)
T 2w70_A 282 G-EFYFIEMNTRIQV 295 (449)
T ss_dssp T-EEEEEEEECSCCT
T ss_pred C-CEEEEEEECCCCc
Confidence 3 4899999998874
No 56
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=99.59 E-value=2e-14 Score=140.04 Aligned_cols=202 Identities=10% Similarity=0.078 Sum_probs=130.0
Q ss_pred CccEEEEccCchhH-HHHHHHHHHhCCCCccc-CcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhH
Q 037279 54 PFDCIVHKLYGPDW-TRQLQQFSSQNPNVPII-DSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTS 131 (327)
Q Consensus 54 ~~Dvilhk~~~~~~-~~~l~~~~~~~p~v~Vi-d~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~ 131 (327)
.+|+|+.- .+.. .+.+.+.+.+ .|++++ +++++++.+.||..+.++|.+ .|||+|++..+.+.+++.+
T Consensus 62 ~~d~v~~~--~E~~~~~~~~~~l~~-~gi~~~g~~~~~~~~~~dK~~~k~~l~~-------~gip~p~~~~~~~~~~~~~ 131 (424)
T 2yw2_A 62 GVDFTIVG--PEAPLVEGIVDEFEK-RGLKIFGPNKEAAKLEGSKAFAKTFMKK-------YGIPTARYEVFTDFEKAKE 131 (424)
T ss_dssp TCSEEEEC--SHHHHHTTHHHHHHH-TTCCEESCCTTTTHHHHCHHHHHHHHHH-------TTCCBCCEEEESCHHHHHH
T ss_pred CCCEEEEC--CchHHHHHHHHHHHH-CCCcEECcCHHHHHHHhCHHHHHHHHHH-------cCCCCCCeEEECCHHHHHH
Confidence 45777763 2221 1223333333 478888 899999999999999999998 6999999999988776655
Q ss_pred HHhccCCCcEEEeeccCCCCccceeeEEEeChhhhccC-------------CCceEEEeccCCCCeEEEEEEE--CCEEE
Q 037279 132 IEDLKLTFPVIAKPLVADGSVKSHQMYLIFDSQGLESM-------------TAPFVLQEFVNHGGFIFKVYVA--GMNVK 196 (327)
Q Consensus 132 ~~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~~~~~l~~l-------------~~p~vvQefI~h~g~d~KV~Vi--G~~v~ 196 (327)
. ...++||+|+||..|. +|+++.++.+.+++... ..++++||||+ |..+.|.++ |+.++
T Consensus 132 ~-~~~~~~PvvvKp~~g~---gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~--g~E~sv~~~~~G~~~~ 205 (424)
T 2yw2_A 132 Y-VEKVGAPIVVKADGLA---AGKGAVVCETVEKAIETLDRFLNKKIFGKSSERVVIEEFLE--GEEASYIVMINGDRYV 205 (424)
T ss_dssp H-HHHHCSSEEEEESSCC---TTCSEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC--SEEEEEEEEEETTEEE
T ss_pred H-HHHcCCcEEEEeCCCC---CCCCEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCC--CcEEEEEEEEcCCEEE
Confidence 3 3457899999999874 46899999999877521 25899999997 788888877 44343
Q ss_pred EE--EeccCCCchhhhhhhcCCccccccccccccCCcccccCCCCCCCCCccccccCC-CCc--HHHH-HHHHHHHHHHh
Q 037279 197 CV--KRKSLPDISEEKLKSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVE-MPS--QSFL-CELARGMREAL 270 (327)
Q Consensus 197 ~~--~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~l-~~lA~~~~~~l 270 (327)
.. .|..-+ + +.++ .+..+.. .+ ...+.. ++. .+.+ ++++.++.++|
T Consensus 206 ~~~~~~~~~~-~-----------~~~~--~~~~~g~-----------~~---~~~p~~~l~~~~~~~~~~~~~~~~~~~l 257 (424)
T 2yw2_A 206 PLPTSQDHKR-L-----------LDED--KGPNTGG-----------MG---AYSPTPVINEEVEKRIREEIVERVIKGL 257 (424)
T ss_dssp ECCCBEECCE-E-----------ETTT--EEEECSC-----------SE---EEESCTTSCHHHHHHHHHHTHHHHHHHH
T ss_pred eecceeeccc-c-----------ccCC--CCCCCCC-----------Ce---eECCCccCCHHHHHHHHHHHHHHHHHHH
Confidence 21 121100 0 0000 0000000 00 011111 221 2234 46777778776
Q ss_pred ---CCc---EeEEEEEEeCCCCCcEEEEEEcCCCCCCC
Q 037279 271 ---GLN---LFNFDVMRDARDSNRYLIIDVNYFPGYAK 302 (327)
Q Consensus 271 ---Gl~---l~G~Dvi~~~~~g~~~~VidVN~fPg~~g 302 (327)
|+. ++++|++.+. +| ++|+|||.-||-.+
T Consensus 258 ~~~g~~~~G~~~ve~~~~~-~g--~~viEiN~R~g~~~ 292 (424)
T 2yw2_A 258 KEEGIYYRGFLYAGLMITK-EG--PKVLEFNVRLGDPE 292 (424)
T ss_dssp HHHTCCCEEEEEEEEEEET-TE--EEEEEEESSCCTTT
T ss_pred HHcCCCceeEEEEEEEEeC-CC--cEEEEEecCCCCcH
Confidence 554 4569999985 33 89999999998543
No 57
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=99.58 E-value=4.4e-14 Score=139.02 Aligned_cols=241 Identities=11% Similarity=0.077 Sum_probs=146.5
Q ss_pred eEEEEEeCCccccccchhHHH-HHHHhCCCeEEEeCCCCC-cc--------------------ccCCccEEEEccCchhH
Q 037279 10 FRIGYALAPKKGQSLIQPSLL-TKASERGIDLIPIDPIKP-LV--------------------EQGPFDCIVHKLYGPDW 67 (327)
Q Consensus 10 ~~vG~~~~~~k~~~~~~~~l~-~~~~~~gi~~~~ld~~~~-l~--------------------~q~~~Dvilhk~~~~~~ 67 (327)
.+|++.-+--+.. .+. .++++.|++.+.+++..+ .. ....+|+|+.- .+..
T Consensus 22 ~~iliiG~g~r~~-----a~a~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~d~vi~~--~E~~ 94 (451)
T 2yrx_A 22 MNVLVIGRGGREH-----AIAWKAAQSPLVGKLYVAPGNPGIADVAELVHIDELDIEALVQFAKQQAIDLTIVG--PEAP 94 (451)
T ss_dssp EEEEEEECSHHHH-----HHHHHHHTCTTEEEEEEEECCTTGGGTSEECCCCTTCHHHHHHHHHHTTCSEEEEC--SHHH
T ss_pred CEEEEECCCHHHH-----HHHHHHHhcCCCCEEEEECCChhhhhhCceeccCCCCHHHHHHHHHHcCCCEEEEC--CchH
Confidence 4677776663221 222 334667888777764322 00 01256777763 2221
Q ss_pred -HHHHHHHHHhCCCCccc-CcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEEEee
Q 037279 68 -TRQLQQFSSQNPNVPII-DSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKP 145 (327)
Q Consensus 68 -~~~l~~~~~~~p~v~Vi-d~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~VvKP 145 (327)
...+.+.+++ .|++++ +++++++.+.||..+.++|.+ .|||+|++..+.+.+++.+.. ..++||+|+||
T Consensus 95 ~~~~~~~~l~~-~gi~~~g~~~~~~~~~~dK~~~k~~l~~-------~gip~p~~~~~~~~~~~~~~~-~~~~~PvVvKp 165 (451)
T 2yrx_A 95 LASGIVDRFMA-EGLRIFGPSQRAALIEGSKAFAKELMKK-------YGIPTADHAAFTSYEEAKAYI-EQKGAPIVIKA 165 (451)
T ss_dssp HHTTHHHHHHH-TTCCEESCCHHHHHHHHCHHHHHHHHHH-------TTCCBCCEEEESCHHHHHHHH-HHHCSSEEEEE
T ss_pred HHHHHHHHHHH-CCCCEeCccHHHHHHhhCHHHHHHHHHH-------cCCCCCCeEEECCHHHHHHHH-HhcCCcEEEEe
Confidence 1223333333 478888 789999999999999999998 699999999999877665543 45789999999
Q ss_pred ccCCCCccceeeEEEeChhhhccC-------------CCceEEEeccCCCCeEEEEEEE--CCEEEEE--EeccCCCchh
Q 037279 146 LVADGSVKSHQMYLIFDSQGLESM-------------TAPFVLQEFVNHGGFIFKVYVA--GMNVKCV--KRKSLPDISE 208 (327)
Q Consensus 146 ~~~~Gs~~sh~m~lv~~~~~l~~l-------------~~p~vvQefI~h~g~d~KV~Vi--G~~v~~~--~R~S~~~~~~ 208 (327)
..+. .|.++.++.+.+++... ..++++||||+ |.++.|.++ |+.++.. .|..-+
T Consensus 166 ~~~~---gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~--G~E~sv~~~~dG~~~~~~~~~~~~~~---- 236 (451)
T 2yrx_A 166 DGLA---AGKGVTVAQTVEEALAAAKAALVDGQFGTAGSQVVIEEYLE--GEEFSFMAFVNGEKVYPLAIAQDHKR---- 236 (451)
T ss_dssp CC-------CCEEEESSHHHHHHHHHHHHHHSCCBTTBCCEEEEECCC--SEEEEEEEEEETTEEEECCCBEECCE----
T ss_pred CCCC---CCCcEEEECCHHHHHHHHHHHHhccccCCCCCeEEEEECCc--CcEEEEEEEEcCCEEEEeeeEEeccc----
Confidence 9874 46899999999876421 36899999997 789998887 3333221 111000
Q ss_pred hhhhhcCCccccccccccccCCcccccCCCCCCCCCccccccCC-CCc--HHHH-HHHHHHHHHHh---CCc---EeEEE
Q 037279 209 EKLKSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVE-MPS--QSFL-CELARGMREAL---GLN---LFNFD 278 (327)
Q Consensus 209 ~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~l-~~lA~~~~~~l---Gl~---l~G~D 278 (327)
.+.++. +..... .+ ...+.. ++. .+.+ ++++.++.++| |+. ++++|
T Consensus 237 --------~~~~~~--~~~~g~-----------~~---~~~p~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve 292 (451)
T 2yrx_A 237 --------AYDGDE--GPNTGG-----------MG---AYSPVPQISDEMMDAALEAILRPAAKALAAEGRPFLGVLYAG 292 (451)
T ss_dssp --------EETTTE--EEECSC-----------SE---EEESCTTSCHHHHHHHHHHTHHHHHHHHHHTTCCCEEEEEEE
T ss_pred --------cccCCC--CCCCCC-----------Ce---EEccCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEE
Confidence 000000 000000 00 011111 221 2233 56677777766 555 56689
Q ss_pred EEEeCCCCCcEEEEEEcCCCCCCC
Q 037279 279 VMRDARDSNRYLIIDVNYFPGYAK 302 (327)
Q Consensus 279 vi~~~~~g~~~~VidVN~fPg~~g 302 (327)
++.+. +| ++|+|||.-||-.+
T Consensus 293 ~~~~~-~g--~~viEiN~R~g~~~ 313 (451)
T 2yrx_A 293 LMATA-NG--PKVIEFNARFGDPE 313 (451)
T ss_dssp EEEET-TE--EEEEEEESSCCTTH
T ss_pred EEEeC-CC--cEEEEEecCCCCcH
Confidence 99985 33 89999999998543
No 58
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*
Probab=99.56 E-value=2.6e-14 Score=139.17 Aligned_cols=202 Identities=9% Similarity=0.073 Sum_probs=129.8
Q ss_pred CccEEEEccCchhH-HHHHHHHHHhCCCCccc-CcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhH
Q 037279 54 PFDCIVHKLYGPDW-TRQLQQFSSQNPNVPII-DSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTS 131 (327)
Q Consensus 54 ~~Dvilhk~~~~~~-~~~l~~~~~~~p~v~Vi-d~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~ 131 (327)
.+|+|+.-. +.. .+.+.+.+.+ .|++++ +++++++.+.||..+.++|.+ .|||+|++..+.+.+++.+
T Consensus 62 ~~d~v~~~~--E~~~~~~~~~~l~~-~gi~~~g~~~~~~~~~~dK~~~k~~l~~-------~gip~p~~~~~~~~~~~~~ 131 (422)
T 2xcl_A 62 QVGLTIVGP--EVPLIEGLVDEFEK-AGLHVFGPSKAAAIIEGSKQFAKDLMKK-------YDIPTAEYETFTSFDEAKA 131 (422)
T ss_dssp TEEEEEECS--HHHHHTTHHHHHHH-TTCCEESCCTTTTHHHHCHHHHHHHHHH-------TTCCBCCEEEESCHHHHHH
T ss_pred CCCEEEECC--cHHHHHHHHHHHHH-CCCCEECcCHHHHHHhcCHHHHHHHHHH-------cCCCCCCeEEECCHHHHHH
Confidence 467777632 221 1223333333 478888 899999999999999999998 6999999999988776655
Q ss_pred HHhccCCCcEEEeeccCCCCccceeeEEEeChhhhccC-------------CCceEEEeccCCCCeEEEEEEE--CCEEE
Q 037279 132 IEDLKLTFPVIAKPLVADGSVKSHQMYLIFDSQGLESM-------------TAPFVLQEFVNHGGFIFKVYVA--GMNVK 196 (327)
Q Consensus 132 ~~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~~~~~l~~l-------------~~p~vvQefI~h~g~d~KV~Vi--G~~v~ 196 (327)
. ...++||+|+||..+. .|+++.++.+.+++... ..++++||||+ |.++.|.++ |+.++
T Consensus 132 ~-~~~~~~P~vvKp~~~~---~g~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~--g~E~sv~~~~dG~~~~ 205 (422)
T 2xcl_A 132 Y-VQEKGAPIVIKADGLA---AGKGVTVAMTEEEAIACLHDFLEDEKFGDASASVVIEEYLS--GEEFSLMAFVKGEKVY 205 (422)
T ss_dssp H-HHHHCSSEEEEESSCG---GGTCEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC--SEEEEEEEEEETTEEE
T ss_pred H-HHhcCCCEEEEeCCCC---CCCcEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCc--CcEEEEEEEEcCCEEE
Confidence 4 3457899999999873 56899999999877521 26899999997 799999888 34332
Q ss_pred EE--EeccCCCchhhhhhhcCCccccccccccccCCcccccCCCCCCCCCccccccCC-CCc--HHHH-HHHHHHHHHHh
Q 037279 197 CV--KRKSLPDISEEKLKSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVE-MPS--QSFL-CELARGMREAL 270 (327)
Q Consensus 197 ~~--~R~S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~l-~~lA~~~~~~l 270 (327)
.. .|..- .+ +.++. +..... . + ...+.. ++. .+++ ++++.++.++|
T Consensus 206 ~~~~~~~~~-~~-----------~~~~~--~~~~g~---~--------~---~~~p~~~l~~~~~~~~~~~~~~~~~~~l 257 (422)
T 2xcl_A 206 PMVIAQDHK-RA-----------FDGDK--GPNTGG---M--------G---AYSPVPQISEETVRHAVETIVKPAAKAM 257 (422)
T ss_dssp ECCCBEEEE-EE-----------EGGGE--EEEEEE---E--------E---EEESCTTSCHHHHHHHHHHTHHHHHHHH
T ss_pred ecceeeeee-hh-----------cCCCC--CCCCCC---C--------e---eEccCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 21 11100 00 00000 000000 0 0 001111 221 2233 34777777776
Q ss_pred ---CCc---EeEEEEEEeCCCCCcEEEEEEcCCCCCCC
Q 037279 271 ---GLN---LFNFDVMRDARDSNRYLIIDVNYFPGYAK 302 (327)
Q Consensus 271 ---Gl~---l~G~Dvi~~~~~g~~~~VidVN~fPg~~g 302 (327)
|+. ++++|++.+. +| ++|+|||.-||-.+
T Consensus 258 ~~~g~~~~G~~~vd~~~~~-~g--~~viEiN~R~g~~~ 292 (422)
T 2xcl_A 258 VQEGRSFTGVLYAGLMLTE-NG--SKVIEFNARFGDPE 292 (422)
T ss_dssp HHTTCCCEEEEEEEEEEET-TE--EEEEEEESSCCTTT
T ss_pred HHcCCCcEEEEEeeEEEeC-CC--cEEEEEecCCCCcH
Confidence 555 4668999985 33 89999999999654
No 59
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=99.55 E-value=8.5e-15 Score=151.30 Aligned_cols=224 Identities=9% Similarity=0.133 Sum_probs=147.1
Q ss_pred hhHHHHHHHhCCCeEEEeCCCCC--------------c------cc------------cCCccEEEEccCc-hhHHHHHH
Q 037279 26 QPSLLTKASERGIDLIPIDPIKP--------------L------VE------------QGPFDCIVHKLYG-PDWTRQLQ 72 (327)
Q Consensus 26 ~~~l~~~~~~~gi~~~~ld~~~~--------------l------~~------------q~~~Dvilhk~~~-~~~~~~l~ 72 (327)
..+++++|++.|++.+.++.+.+ + .+ ....|+|+.-... .... .+.
T Consensus 40 a~~iiraar~lGi~~vav~s~~d~~a~~~~~AD~~~~i~~~~~~~syld~~~i~~~a~~~~~daI~pg~gflsE~~-~~a 118 (675)
T 3u9t_A 40 ACRVMRSARALGIGSVAVHSDIDRHARHVAEADIAVDLGGAKPADSYLRGDRIIAAALASGAQAIHPGYGFLSENA-DFA 118 (675)
T ss_dssp HHHHHHHHHHHTCEEEEEECSGGGGCHHHHTCSEEEECCCSSGGGTTTCHHHHHHHHHHTTCSEEECCSSTTTTCH-HHH
T ss_pred HHHHHHHHHHCCCEEEEEECCCCCCchhHhhCCEEEEcCCCccccCccCHHHHHHHHHHhCcCEEEeCCcccccCH-HHH
Confidence 45789999999999999864311 0 00 0134666643311 0111 233
Q ss_pred HHHHhCCCCccc-CcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEE--EcCccchhHHHhccCCCcEEEeeccCC
Q 037279 73 QFSSQNPNVPII-DSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVV--VSEMKSLTSIEDLKLTFPVIAKPLVAD 149 (327)
Q Consensus 73 ~~~~~~p~v~Vi-d~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~--~~~~~~~~~~~~~~l~~P~VvKP~~~~ 149 (327)
+.+.+ .|++++ +++++++.+.||..+.++|.+ .|||+|++.. +.+.+++.+. ...++||+|+||..|+
T Consensus 119 ~~le~-~Gi~~iGp~~~ai~~~~DK~~~k~~l~~-------~GVpvpp~~~~~~~s~~e~~~~-a~~igyPvvvKp~~G~ 189 (675)
T 3u9t_A 119 RACEE-AGLLFLGPPAAAIDAMGSKSAAKALMEE-------AGVPLVPGYHGEAQDLETFRRE-AGRIGYPVLLKAAAGG 189 (675)
T ss_dssp HHHHT-TTCEESSCCHHHHHHHTSHHHHHHHHHH-------TTCCBCCCCCSCCCCTTHHHHH-HHHSCSSBCCBCCC--
T ss_pred HHHHH-cCCceeCCCHHHHHHhchHHHHHHHHHH-------cCcCcCCccccCCCCHHHHHHH-HHhCCCcEEEEECCCC
Confidence 33333 478777 799999999999999999998 6999999875 5566665543 4578999999999875
Q ss_pred CCccceeeEEEeChhhhcc----C---------CCceEEEeccCCCCeEEEEEEECC---EEEE-EEec-cCCCchhhhh
Q 037279 150 GSVKSHQMYLIFDSQGLES----M---------TAPFVLQEFVNHGGFIFKVYVAGM---NVKC-VKRK-SLPDISEEKL 211 (327)
Q Consensus 150 Gs~~sh~m~lv~~~~~l~~----l---------~~p~vvQefI~h~g~d~KV~ViG~---~v~~-~~R~-S~~~~~~~~~ 211 (327)
++.+|.++.++++|.. + +.++++||||+.+ +.+-|-|++| +++. ..|. |+...
T Consensus 190 ---Gg~Gv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEeyI~g~-reiev~v~~d~~G~vv~l~~rd~s~qr~----- 260 (675)
T 3u9t_A 190 ---GGKGMKVVEREAELAEALSSAQREAKAAFGDARMLVEKYLLKP-RHVEIQVFADRHGHCLYLNERDCSIQRR----- 260 (675)
T ss_dssp -------CCCBCCTTTHHHHHSCCCC--------CCCBCCBCCSSC-BCEEEEEEECSSSCEEEEEEEECCCBSS-----
T ss_pred ---CCccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEeecCCC-cEEEEEEEEcCCCCEEEEeccccceeec-----
Confidence 4689999999988752 1 3589999999743 7888888865 4443 3332 22110
Q ss_pred hhcCCccccccccccccCCcccccCCCCCCCCCccccccCC-CC--cHHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCC
Q 037279 212 KSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVE-MP--SQSFLCELARGMREALGLN-LFNFDVMRDARDSN 287 (327)
Q Consensus 212 ~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~l~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~ 287 (327)
+ .+.. +..+.. ++ ..+++.++|.++.+++|+. .+++|++.+. +|+
T Consensus 261 ---------~--qk~i-------------------e~~Pa~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~-dG~ 309 (675)
T 3u9t_A 261 ---------H--QKVV-------------------EEAPAPGLGAELRRAMGEAAVRAAQAIGYVGAGTVEFLLDE-RGQ 309 (675)
T ss_dssp ---------S--SBCE-------------------EEESCSSCCHHHHHHHHHHHHHHHHHTTCCSEEEEECCBCT-TSC
T ss_pred ---------c--ceEE-------------------EECCCCCCCHHHHHHHHHHHHHHHHHcCCccceEEEEEEcC-CCC
Confidence 0 0100 001111 11 2457889999999999994 7789999986 454
Q ss_pred cEEEEEEcCCCCC
Q 037279 288 RYLIIDVNYFPGY 300 (327)
Q Consensus 288 ~~~VidVN~fPg~ 300 (327)
+|++|+|.-|+-
T Consensus 310 -~~~iEiNpR~~~ 321 (675)
T 3u9t_A 310 -FFFMEMNTRLQV 321 (675)
T ss_dssp -BCBCEEESSCCT
T ss_pred -EEEEeccccccC
Confidence 899999999864
No 60
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=99.54 E-value=1.4e-14 Score=149.86 Aligned_cols=222 Identities=13% Similarity=0.204 Sum_probs=108.7
Q ss_pred hHHHHHHHhCCCeEEEe--CCCCCc-----cc-------------------------cCCccEEEEccC--chhHHHHHH
Q 037279 27 PSLLTKASERGIDLIPI--DPIKPL-----VE-------------------------QGPFDCIVHKLY--GPDWTRQLQ 72 (327)
Q Consensus 27 ~~l~~~~~~~gi~~~~l--d~~~~l-----~~-------------------------q~~~Dvilhk~~--~~~~~~~l~ 72 (327)
.+++++|++.|++.+.+ |.+... .+ +...|+|+.-.. ++. ..+.
T Consensus 15 ~riiraar~lGi~~vav~sd~d~~a~~~~~aD~~~~i~p~~~~~syld~~~i~~~a~~~~~daI~pg~gflsE~--~~~a 92 (681)
T 3n6r_A 15 CRVIKTARKMGISTVAIYSDADKQALHVQMADEAVHIGPPPANQSYIVIDKVMAAIRATGAQAVHPGYGFLSEN--SKFA 92 (681)
T ss_dssp HHHHHHHGGGSCCBCCEECSTTSSCHHHHHSSCCEECSSSSGGGTTSCHHHHHHHHHHTCCSCCBCCSSSSTTC--HHHH
T ss_pred HHHHHHHHHcCCEEEEEEcCCCCCChhHHhCCEEEEcCCCCcccCccCHHHHHHHHHHhCcCEEEECCCccccC--HHHH
Confidence 46889999999999888 433210 00 012444443321 111 1333
Q ss_pred HHHHhCCCCccc-CcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEE--EEcCccchhHHHhccCCCcEEEeeccCC
Q 037279 73 QFSSQNPNVPII-DSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQV--VVSEMKSLTSIEDLKLTFPVIAKPLVAD 149 (327)
Q Consensus 73 ~~~~~~p~v~Vi-d~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~--~~~~~~~~~~~~~~~l~~P~VvKP~~~~ 149 (327)
+.+.+ .|++++ +++++++.+.||..+.++|.+ .|||+|++. .+.+.+++.+. ...++||+|+||..|+
T Consensus 93 ~~le~-~Gi~~iGp~~~ai~~~~dK~~~k~~l~~-------~GVPvpp~~~~~~~s~~e~~~~-a~~igyPvVvKp~~gg 163 (681)
T 3n6r_A 93 EALEA-EGVIFVGPPKGAIEAMGDKITSKKIAQE-------ANVSTVPGYMGLIEDADEAVKI-SNQIGYPVMIKASAGG 163 (681)
T ss_dssp HHHHT-TTCCCSSSCHHHHHHTTSHHHHHHHHHT-------TTCCCCCC-------------------------------
T ss_pred HHHHH-cCCceECCCHHHHHHhCCHHHHHHHHHH-------cCcCcCCccccCcCCHHHHHHH-HHhcCCcEEEEECCCC
Confidence 44344 378887 889999999999999999998 699999975 56666665443 4678999999999874
Q ss_pred CCccceeeEEEeChhhhccC-------------CCceEEEeccCCCCeEEEEEEECCE---EEE-EEec-cCCCchhhhh
Q 037279 150 GSVKSHQMYLIFDSQGLESM-------------TAPFVLQEFVNHGGFIFKVYVAGMN---VKC-VKRK-SLPDISEEKL 211 (327)
Q Consensus 150 Gs~~sh~m~lv~~~~~l~~l-------------~~p~vvQefI~h~g~d~KV~ViG~~---v~~-~~R~-S~~~~~~~~~ 211 (327)
++++|.++.++++|... +.++++||||+. .+.+.|.|++|. ++. ..|. |+..-
T Consensus 164 ---ggkGv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEe~I~g-~rei~V~v~~d~~G~vv~l~~rd~s~qr~----- 234 (681)
T 3n6r_A 164 ---GGKGMRIAWNDQEAREGFQSSKNEAANSFGDDRIFIEKFVTQ-PRHIEIQVLCDSHGNGIYLGERECSIQRR----- 234 (681)
T ss_dssp ------------------------------------------CCS-CEEEEEEEECCSSSCCEEEEEEECCCEET-----
T ss_pred ---CCCCEEEECCHHHHHHHHHHHHHHHHHhCCCCcEEEEeccCC-CcEEEEEEEEeCCCCEEEEeeeecceecc-----
Confidence 46899999999887532 247999999974 389999999864 332 2232 22100
Q ss_pred hhcCCccccccccccccCCcccccCCCCCCCCCccccccCC-CC--cHHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCC
Q 037279 212 KSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVE-MP--SQSFLCELARGMREALGLN-LFNFDVMRDARDSN 287 (327)
Q Consensus 212 ~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~l~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~ 287 (327)
+ .+.. +..+.. ++ ..+++.++|.++.+++|+. .+.+|++.+. +|+
T Consensus 235 ---------~--~k~~-------------------e~~Pa~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~d~-dg~ 283 (681)
T 3n6r_A 235 ---------N--QKVV-------------------EEAPSPFLDEATRRAMGEQAVALAKAVGYASAGTVEFIVDG-QKN 283 (681)
T ss_dssp ---------T--EECE-------------------EEESCSSCCHHHHHHHHHHHHHHHHTTTCCSEEEEEEEECT-TSC
T ss_pred ---------C--ccEE-------------------EecCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEeC-CCC
Confidence 0 0100 001111 12 2457889999999999997 5669999985 353
Q ss_pred cEEEEEEcCCCCC
Q 037279 288 RYLIIDVNYFPGY 300 (327)
Q Consensus 288 ~~~VidVN~fPg~ 300 (327)
+|++|+|.-++-
T Consensus 284 -~~~lEiNpR~~~ 295 (681)
T 3n6r_A 284 -FYFLEMNTRLQV 295 (681)
T ss_dssp -CCCCEEECSCCT
T ss_pred -EEEEecccccCC
Confidence 899999999864
No 61
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}
Probab=99.52 E-value=5.8e-14 Score=138.12 Aligned_cols=242 Identities=9% Similarity=0.070 Sum_probs=147.5
Q ss_pred eEEEEEeCCccccccchhHHH-HHHHhCCCeEEEeCCCCCc-c---c-------------------cCCccEEEEccCch
Q 037279 10 FRIGYALAPKKGQSLIQPSLL-TKASERGIDLIPIDPIKPL-V---E-------------------QGPFDCIVHKLYGP 65 (327)
Q Consensus 10 ~~vG~~~~~~k~~~~~~~~l~-~~~~~~gi~~~~ld~~~~l-~---~-------------------q~~~Dvilhk~~~~ 65 (327)
.+|++.-+--+.. .+. .++++.|++.+.+++..+- . + ...+|+|+.-. +.
T Consensus 25 ~~IlIlG~g~r~~-----al~~~~a~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~d~V~~~~-E~ 98 (452)
T 2qk4_A 25 ARVLIIGSGGREH-----TLAWKLAQSHHVKQVLVAPGNAGTACSEKISNTAISISDHTALAQFCKEKKIEFVVVGP-EA 98 (452)
T ss_dssp EEEEEEECSHHHH-----HHHHHHTTCTTEEEEEEEECCGGGSBSSSEEECCCCSSCHHHHHHHHHHHTCCEEEECS-SH
T ss_pred cEEEEECCCHHHH-----HHHHHHHhcCCCCEEEEECCChhhhhhccccccccCCCCHHHHHHHHHHcCCCEEEECC-cH
Confidence 4677766653211 122 3356678887777654320 0 0 01456666532 11
Q ss_pred hHHHHHHHHHHhCCCCccc-CcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccCCCc-EEE
Q 037279 66 DWTRQLQQFSSQNPNVPII-DSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFP-VIA 143 (327)
Q Consensus 66 ~~~~~l~~~~~~~p~v~Vi-d~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P-~Vv 143 (327)
.....+.+.+++ .|++++ +++++++.+.||..+.++|.+ .|||+|++..+.+.+++.+. ...++|| +|+
T Consensus 99 ~~~~~~~~~l~~-~gi~~~g~~~~~~~~~~dK~~~k~~l~~-------~gip~p~~~~~~~~~~~~~~-~~~~g~P~vvv 169 (452)
T 2qk4_A 99 PLAAGIVGNLRS-AGVQCFGPTAEAAQLESSKRFAKEFMDR-------HGIPTAQWKAFTKPEEACSF-ILSADFPALVV 169 (452)
T ss_dssp HHHTTHHHHHHH-TTCCEESCCTTTTHHHHBHHHHHHHHHH-------TTCCBCCEEEESSHHHHHHH-HHHCSSCEEEE
T ss_pred HHHHHHHHHHHh-cCCcEeCcCHHHHHHhcCHHHHHHHHHH-------CCCCCCCeEEECCHHHHHHH-HHhCCCCeEEE
Confidence 112223333333 478888 899999999999999999998 69999999999887766553 3568999 999
Q ss_pred eeccCCCCccceeeEEEeChhhhccC-------------CCceEEEeccCCCCeEEEEEEEC-CE-EEEE--EeccCCCc
Q 037279 144 KPLVADGSVKSHQMYLIFDSQGLESM-------------TAPFVLQEFVNHGGFIFKVYVAG-MN-VKCV--KRKSLPDI 206 (327)
Q Consensus 144 KP~~~~Gs~~sh~m~lv~~~~~l~~l-------------~~p~vvQefI~h~g~d~KV~ViG-~~-v~~~--~R~S~~~~ 206 (327)
||..+. +|.++.++.+++++... ..++++||||+ |+++.|.+++ ++ +... .|..-+ +
T Consensus 170 Kp~~~~---gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~--G~E~sv~~~~dG~~~~~~~~~~~~~~-~ 243 (452)
T 2qk4_A 170 KASGLA---AGKGVIVAKSKEEACKAVQEIMQEKAFGAAGETIVIEELLD--GEEVSCLCFTDGKTVAPMPPAQDHKR-L 243 (452)
T ss_dssp EESBC------CCEEECSSHHHHHHHHHHHTTC-------CCEEEEECCC--SEEEEEEEEECSSCEEECCCBEEEEE-E
T ss_pred EeCCCC---CCCCEEEeCCHHHHHHHHHHHHhhhhccCCCCeEEEEECCC--CCeEEEEEEECCCEEEEcceeeeccc-c
Confidence 998874 45899999999877521 35899999997 7999999884 33 3321 111000 0
Q ss_pred hhhhhhhcCCccccccccccccCCcccccCCCCCCCCCccccccCC-CCc--HHHHH-HHHHHHHHHh---CC---cEeE
Q 037279 207 SEEKLKSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVE-MPS--QSFLC-ELARGMREAL---GL---NLFN 276 (327)
Q Consensus 207 ~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~l~-~lA~~~~~~l---Gl---~l~G 276 (327)
+.++. +..... . + ...+.. ++. .+++. ++|.++.++| |+ .+++
T Consensus 244 -----------~~~~~--~~~~g~---~--------~---~~~P~~~l~~~~~~~~~~~~a~~~~~~l~~~g~~~~G~~~ 296 (452)
T 2qk4_A 244 -----------LEGDG--GPNTGG---M--------G---AYCPAPQVSNDLLLKIKDTVLQRTVDGMQQEGTPYTGILY 296 (452)
T ss_dssp -----------ETTTE--EEEEEE---E--------E---EEESCTTCCHHHHHHHHHHTHHHHHHHHHHTTCCCCEEEE
T ss_pred -----------cCCCC--CCCCCC---c--------e---eeccCccCCHHHHHHHHHHHHHHHHHHHHHcCCCceeEEE
Confidence 00000 000000 0 0 001111 221 23443 6788888876 44 4678
Q ss_pred EEEEEeCCCCCcEEEEEEcCCCCCCC
Q 037279 277 FDVMRDARDSNRYLIIDVNYFPGYAK 302 (327)
Q Consensus 277 ~Dvi~~~~~g~~~~VidVN~fPg~~g 302 (327)
+|++.+. +| ++|+|||.-||-.+
T Consensus 297 ve~~~~~-~g--~~viEiN~R~~~~~ 319 (452)
T 2qk4_A 297 AGIMLTK-NG--PKVLEFNCRFGDPE 319 (452)
T ss_dssp EEEEEET-TE--EEEEEEESSCCTTT
T ss_pred EEEEEeC-CC--cEEEEEeccCCCcH
Confidence 9999985 33 89999999999543
No 62
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=99.51 E-value=3.5e-13 Score=146.23 Aligned_cols=222 Identities=12% Similarity=0.204 Sum_probs=145.7
Q ss_pred hhHHHHHHHhCCCeEEEeCCCCCc-------c--------------c------------cCCccEEEEccC--chhHHHH
Q 037279 26 QPSLLTKASERGIDLIPIDPIKPL-------V--------------E------------QGPFDCIVHKLY--GPDWTRQ 70 (327)
Q Consensus 26 ~~~l~~~~~~~gi~~~~ld~~~~l-------~--------------~------------q~~~Dvilhk~~--~~~~~~~ 70 (327)
..+++++|++.|++.+.++.+.+. . . +...|+|+.-.. ++. ..
T Consensus 16 a~riiraa~elGi~vVav~s~~d~~s~~~~~ADe~~~ig~~~~~~~syld~~~Ii~~a~~~~~DaI~pg~gflsE~--~~ 93 (1150)
T 3hbl_A 16 AIRIFRAAAELDISTVAIYSNEDKSSLHRYKADESYLVGSDLGPAESYLNIERIIDVAKQANVDAIHPGYGFLSEN--EQ 93 (1150)
T ss_dssp HHHHHHHHHHTTCEEEEEECGGGTTCGGGGTSSEEEECCTTSCTTGGGTCHHHHHHHHHHTTCSEEECTTTTSTTC--HH
T ss_pred HHHHHHHHHHCCCEEEEEEcCCcccchhhhhcceeeecCCCCCccccccCHHHHHHHHHHhCCCEEEECCCccccc--HH
Confidence 347889999999999999744210 0 0 013566665421 111 12
Q ss_pred HHHHHHhCCCCccc-CcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEE--EEcCccchhHHHhccCCCcEEEeecc
Q 037279 71 LQQFSSQNPNVPII-DSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQV--VVSEMKSLTSIEDLKLTFPVIAKPLV 147 (327)
Q Consensus 71 l~~~~~~~p~v~Vi-d~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~--~~~~~~~~~~~~~~~l~~P~VvKP~~ 147 (327)
+.+...+ .|++++ +++++++.+.||..+.++|.+ .|||+|++. .+.+.+++.+. ...++||+|+||..
T Consensus 94 ~a~~le~-~Gi~~iGp~~eai~~~~DK~~~r~ll~~-------aGIPvpp~~~~~v~s~eea~~~-a~~iGyPvVVKP~~ 164 (1150)
T 3hbl_A 94 FARRCAE-EGIKFIGPHLEHLDMFGDKVKARTTAIK-------ADLPVIPGTDGPIKSYELAKEF-AEEAGFPLMIKATS 164 (1150)
T ss_dssp HHHHHHH-TTCEESSSCHHHHHHHHSHHHHHHHHHH-------TTCCBCCBCSSCBCSSSTTTTT-GGGTCSSEEEECCC
T ss_pred HHHHHHH-CCCCeeCCCHHHHHHhCCHHHHHHHHHH-------cCcCCCCccccCCCCHHHHHHH-HHHcCCCEEEEeCC
Confidence 3333334 378887 899999999999999999998 699999998 67776665443 46799999999998
Q ss_pred CCCCccceeeEEEeChhhhcc----C---------CCceEEEeccCCCCeEEEEEEECCE---EEE-EEec-cCCCchhh
Q 037279 148 ADGSVKSHQMYLIFDSQGLES----M---------TAPFVLQEFVNHGGFIFKVYVAGMN---VKC-VKRK-SLPDISEE 209 (327)
Q Consensus 148 ~~Gs~~sh~m~lv~~~~~l~~----l---------~~p~vvQefI~h~g~d~KV~ViG~~---v~~-~~R~-S~~~~~~~ 209 (327)
|+ +|++|.++.++++|.. + +.++++||||+. .+.+-|-|+++. ++. ..|. |....
T Consensus 165 Gg---Gg~Gv~vv~s~eeL~~a~~~a~~~a~~~fg~~~vlVEeyI~G-~reieV~vl~d~~G~vv~l~er~~s~qr~--- 237 (1150)
T 3hbl_A 165 GG---GGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDN-PKHIEVQVIGDEHGNIVHLFERDCSVQRR--- 237 (1150)
T ss_dssp ----------CEECCSSSCTHHHHSSSSSCC------CBEEECCCSS-CEEEEEEEEECSSSCEEEEEEEEEEEESS---
T ss_pred CC---CCCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEccCC-CcEEEEEEEEeCCCCEEEEEeeccceecc---
Confidence 75 4589999999988742 1 357999999963 388999999763 332 2332 21000
Q ss_pred hhhhcCCccccccccccccCCcccccCCCCCCCCCccccccC-CCC--cHHHHHHHHHHHHHHhCCcEe-EEEEEEeCCC
Q 037279 210 KLKSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESV-EMP--SQSFLCELARGMREALGLNLF-NFDVMRDARD 285 (327)
Q Consensus 210 ~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~l~~lA~~~~~~lGl~l~-G~Dvi~~~~~ 285 (327)
.+ +.. +..+. .++ ..+++.++|.++.+++|+.-+ .+|++.+.+
T Consensus 238 ------------~~-k~~-------------------e~~Pa~~l~~~~~~~l~~~a~~~~~alG~~G~~~vEflvd~d- 284 (1150)
T 3hbl_A 238 ------------HQ-KVV-------------------EVAPSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLVSGD- 284 (1150)
T ss_dssp ------------SC-EEE-------------------EESSCSSCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEETT-
T ss_pred ------------Cc-eeE-------------------EecCCCCCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEECC-
Confidence 00 000 00011 111 245789999999999999754 599999854
Q ss_pred CCcEEEEEEcCCCCC
Q 037279 286 SNRYLIIDVNYFPGY 300 (327)
Q Consensus 286 g~~~~VidVN~fPg~ 300 (327)
.+|++|||.-++-
T Consensus 285 --~~y~iEINpR~~g 297 (1150)
T 3hbl_A 285 --EFFFIEVNPRVQV 297 (1150)
T ss_dssp --EEEEEEEECSCCT
T ss_pred --eEEEEEEeCCCCC
Confidence 4999999999873
No 63
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=99.50 E-value=1.5e-13 Score=149.41 Aligned_cols=224 Identities=14% Similarity=0.182 Sum_probs=110.7
Q ss_pred hHHHHHHHhCCCeEEEeCCCCCcc-------c--------------------------------cCCccEEEEccC--ch
Q 037279 27 PSLLTKASERGIDLIPIDPIKPLV-------E--------------------------------QGPFDCIVHKLY--GP 65 (327)
Q Consensus 27 ~~l~~~~~~~gi~~~~ld~~~~l~-------~--------------------------------q~~~Dvilhk~~--~~ 65 (327)
.+++++|++.|++++.+|.+.+.. + ...+|+|+.-.. .+
T Consensus 27 ~riiraa~elGi~vvav~s~~d~~a~~~~~ADe~~~i~~~~~~~~~~~~~~~yld~~~I~~~a~~~~iD~V~pg~g~lsE 106 (1165)
T 2qf7_A 27 IRVFRAANELGIKTVAIWAEEDKLALHRFKADESYQVGRGPHLARDLGPIESYLSIDEVIRVAKLSGADAIHPGYGLLSE 106 (1165)
T ss_dssp HHHHHHHHHTTCEEEEEECGGGTTCHHHHSSSSEEECSCSTTSSSCCCTTHHHHCHHHHHHHHHHHTCSEEECCSSTTTT
T ss_pred HHHHHHHHHcCCEEEEEECCCcccchhHHhCCEEEEcCCcccccccCCccccccCHHHHHHHHHHhCCCEEEECCCchhc
Confidence 468899999999999998653210 0 013466655321 11
Q ss_pred hHHHHHHHHHHhCCCCccc-CcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEE--EEcCccchhHHHhccCCCcEE
Q 037279 66 DWTRQLQQFSSQNPNVPII-DSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQV--VVSEMKSLTSIEDLKLTFPVI 142 (327)
Q Consensus 66 ~~~~~l~~~~~~~p~v~Vi-d~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~--~~~~~~~~~~~~~~~l~~P~V 142 (327)
. . .+.+.+++ .|++++ +++++++.+.||..+.++|.+ .|||+|++. .+.+.+++.+. ...++||+|
T Consensus 107 ~-~-~~a~~le~-~Gi~~iGp~~~ai~~~~DK~~~k~~l~~-------~GIPvp~~~~~~v~s~eea~~~-a~~igyPvV 175 (1165)
T 2qf7_A 107 S-P-EFVDACNK-AGIIFIGPKADTMRQLGNKVAARNLAIS-------VGVPVVPATEPLPDDMAEVAKM-AAAIGYPVM 175 (1165)
T ss_dssp C-H-HHHHHHHH-TTCEESSCCHHHHHHHHSHHHHHHHHHH-------TTCCBC--------------------------
T ss_pred C-H-HHHHHHHH-cCCceECCCHHHHHHHCCHHHHHHHHHH-------cCCCCCCeeCcCCCCHHHHHHH-HHhcCCCEE
Confidence 1 1 23333333 478776 679999999999999999998 699999998 67776665443 456899999
Q ss_pred EeeccCCCCccceeeEEEeChhhhccC-------------CCceEEEeccCCCCeEEEEEEECCE---EEEE-Eec-cCC
Q 037279 143 AKPLVADGSVKSHQMYLIFDSQGLESM-------------TAPFVLQEFVNHGGFIFKVYVAGMN---VKCV-KRK-SLP 204 (327)
Q Consensus 143 vKP~~~~Gs~~sh~m~lv~~~~~l~~l-------------~~p~vvQefI~h~g~d~KV~ViG~~---v~~~-~R~-S~~ 204 (327)
+||..|. +|.+|.++.++++|... +.++++||||+. |+.+.|.+++|. ++.. .|. +..
T Consensus 176 VKp~~g~---GG~Gv~iv~s~eEL~~a~~~~~~~a~~~fg~~~vlVEefI~g-g~EisV~vl~D~~G~vv~l~~r~~s~~ 251 (1165)
T 2qf7_A 176 LKASWGG---GGRGMRVIRSEADLAKEVTEAKREAMAAFGKDEVYLEKLVER-ARHVESQILGDTHGNVVHLFERDCSVQ 251 (1165)
T ss_dssp -----------------------------------------------CCCSS-EEEEEEEEEECTTSCEEEEEEEEEEEE
T ss_pred EEeCCCC---CCCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEeccC-CcEEEEEEEEcCCCcEEEEEeecccce
Confidence 9999975 45899999999887532 247999999974 689999999863 4432 331 110
Q ss_pred CchhhhhhhcCCccccccccccccCCcccccCCCCCCCCCccccccC-CCC--cHHHHHHHHHHHHHHhCCc-EeEEEEE
Q 037279 205 DISEEKLKSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESV-EMP--SQSFLCELARGMREALGLN-LFNFDVM 280 (327)
Q Consensus 205 ~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~l~~lA~~~~~~lGl~-l~G~Dvi 280 (327)
+ .+ + +.. ...+. .++ ..+++.++|.++.+++|+. .+++|++
T Consensus 252 --r------------~~-~-~~~-------------------e~~Pa~~l~~~~~~~i~~~a~~i~~alg~~G~~~vEf~ 296 (1165)
T 2qf7_A 252 --R------------RN-Q-KVV-------------------ERAPAPYLSEAQRQELAAYSLKIAGATNYIGAGTVEYL 296 (1165)
T ss_dssp --E------------TT-E-EEE-------------------EEESCTTCCHHHHHHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred --e------------cc-c-ceE-------------------EecccccCCHHHHHHHHHHHHHHHHHcCCCcceeEEEE
Confidence 0 00 0 000 00011 122 2457889999999999998 4569999
Q ss_pred EeCCCCCcEEEEEEcCCCCCC
Q 037279 281 RDARDSNRYLIIDVNYFPGYA 301 (327)
Q Consensus 281 ~~~~~g~~~~VidVN~fPg~~ 301 (327)
.+..+| .+|++|||.-++..
T Consensus 297 vd~~dg-~~~~iEiNpR~~~~ 316 (1165)
T 2qf7_A 297 MDADTG-KFYFIEVNPRIQVE 316 (1165)
T ss_dssp EETTTT-EEEEEEEECSCCTT
T ss_pred EECCCC-CEEEEEEEcCCCCC
Confidence 983345 48999999998853
No 64
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A
Probab=99.48 E-value=2.1e-13 Score=137.80 Aligned_cols=174 Identities=11% Similarity=0.128 Sum_probs=119.5
Q ss_pred Cccc-CcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEE--------------------------cCccchhHHH
Q 037279 81 VPII-DSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVV--------------------------SEMKSLTSIE 133 (327)
Q Consensus 81 v~Vi-d~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~--------------------------~~~~~~~~~~ 133 (327)
++++ +++++++.+.||..+.++|++ .|||+|++..+ .+.+++.+.
T Consensus 158 i~~~gp~~~a~~~~~dK~~~k~~l~~-------~GIp~p~~~~~~~~~~~~~~~~~l~~ip~~~~~~~~~~~~~e~~~~- 229 (554)
T 1w96_A 158 VIFIGPPGNAMRSLGDKISSTIVAQS-------AKVPCIPWSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSPEDGLQK- 229 (554)
T ss_dssp CEESSCCHHHHHHSCSHHHHHHHHHH-------TTCCBCCBTTTTCCCCEECTTTCCEECCHHHHGGGSCSSHHHHHHH-
T ss_pred EEEeCCCHHHHHHHhCHHHHHHHHHH-------CCCCcCCccccccccccccccccccccccccccccCCCCHHHHHHH-
Confidence 6555 467899999999999999998 69999998653 333333322
Q ss_pred hccCCCcEEEeeccCCCCccceeeEEEeChhhhccC---------CCceEEEeccCCCCeEEEEEEECC---EEEE-EEe
Q 037279 134 DLKLTFPVIAKPLVADGSVKSHQMYLIFDSQGLESM---------TAPFVLQEFVNHGGFIFKVYVAGM---NVKC-VKR 200 (327)
Q Consensus 134 ~~~l~~P~VvKP~~~~Gs~~sh~m~lv~~~~~l~~l---------~~p~vvQefI~h~g~d~KV~ViG~---~v~~-~~R 200 (327)
...++||+|+||..|. +|.+|.++.++++|... ..++++||||+. ++.+.|.++++ +++. ..|
T Consensus 230 ~~~~g~PvVvKp~~g~---gg~Gv~~v~~~~el~~a~~~~~~~~~~~~vlvEe~i~g-~~e~sv~vl~d~~G~vv~l~~~ 305 (554)
T 1w96_A 230 AKRIGFPVMIKASEGG---GGKGIRQVEREEDFIALYHQAANEIPGSPIFIMKLAGR-ARHLEVQLLADQYGTNISLFGR 305 (554)
T ss_dssp HHHHCSSEEEEETTCC---TTTTEEEECSHHHHHHHHHHHHHHSTTCCEEEEECCCS-CEEEEEEEEECTTSCEEEEEEE
T ss_pred HHHcCCCEEEEECCCC---CCceEEEECCHHHHHHHHHHHHhhccCCCEEEEEecCC-CcEEEEEEEEcCCCCEEEEeee
Confidence 3468999999999975 45899999999887532 468999999973 58999999875 3433 223
Q ss_pred c-cCCCchhhhhhhcCCccccccccccccCCcccccCCCCCCCCCcccccc-CCCCcHHHHHHHHHHHHHHhCC-cEeEE
Q 037279 201 K-SLPDISEEKLKSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLES-VEMPSQSFLCELARGMREALGL-NLFNF 277 (327)
Q Consensus 201 ~-S~~~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~lA~~~~~~lGl-~l~G~ 277 (327)
. +... ++ .++... . +.. ......+++.++|.++.++||+ .++++
T Consensus 306 ~~~~~~--------------~~--~k~~~~----~-------------P~~~l~~~~~~~i~~~a~~~~~alg~~G~~~v 352 (554)
T 1w96_A 306 DCSVQR--------------RH--QKIIEE----A-------------PVTIAKAETFHEMEKAAVRLGKLVGYVSAGTV 352 (554)
T ss_dssp EEEEEE--------------TT--EEEEEE----E-------------SCCSSCHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred eeeeEe--------------ec--cceeee----C-------------CCcCCCHHHHHHHHHHHHHHHHHcCCcceEEE
Confidence 1 2100 00 000000 0 000 0001246788999999999999 57789
Q ss_pred EEEEeCCCCCcEEEEEEcCCCCC
Q 037279 278 DVMRDARDSNRYLIIDVNYFPGY 300 (327)
Q Consensus 278 Dvi~~~~~g~~~~VidVN~fPg~ 300 (327)
|++.+..+|+ +|++|||.-+|-
T Consensus 353 e~~~~~~dg~-~~~iEiN~R~~g 374 (554)
T 1w96_A 353 EYLYSHDDGK-FYFLELNPRLQV 374 (554)
T ss_dssp EEEECTTTCC-EEEEEEECSCCT
T ss_pred EEEEECCCCC-EEEEEeeCCCCc
Confidence 9999733453 899999997764
No 65
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=99.47 E-value=1.7e-13 Score=149.26 Aligned_cols=224 Identities=16% Similarity=0.222 Sum_probs=108.4
Q ss_pred hhHHHHHHHhCCCeEEEeCCCCC--------------c---------c---------ccCCccEEEEccCch-hHHHHHH
Q 037279 26 QPSLLTKASERGIDLIPIDPIKP--------------L---------V---------EQGPFDCIVHKLYGP-DWTRQLQ 72 (327)
Q Consensus 26 ~~~l~~~~~~~gi~~~~ld~~~~--------------l---------~---------~q~~~Dvilhk~~~~-~~~~~l~ 72 (327)
..+++++|++.|++.+.++.+.+ + . .+...|+|+.-.... .. ..+.
T Consensus 43 a~~iiraar~lGi~vVaV~s~~d~~a~~~~~ADe~~~i~p~~~~~syld~~~Il~~a~~~~iDaI~pg~g~lsEn-~~~a 121 (1236)
T 3va7_A 43 AVRIMKTLKRMGIKSVAVYSDPDKYSQHVTDADFSVALHGRTAAETYLDIDKIINAAKKTGAQAIIPGYGFLSEN-ADFS 121 (1236)
T ss_dssp HHHHHHHHHHHTCEEEEEECSGGGGCHHHHHSSEEEECCCSSTTTTTTCHHHHHHHHHHTTCSEEECCSSGGGGC-HHHH
T ss_pred HHHHHHHHHHCCCEEEEEEcCCCcCchhhhhCCEEEEeCCCcccccccCHHHHHHHHHHhCCCEEEECCcccccc-HHHH
Confidence 45789999999999999853311 0 0 012467766543211 11 1233
Q ss_pred HHHHhCCCCccc-CcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCe-EEEEcCccchhHHHhccCCCcEEEeeccCCC
Q 037279 73 QFSSQNPNVPII-DSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPN-QVVVSEMKSLTSIEDLKLTFPVIAKPLVADG 150 (327)
Q Consensus 73 ~~~~~~p~v~Vi-d~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~-~~~~~~~~~~~~~~~~~l~~P~VvKP~~~~G 150 (327)
+...+ .|++++ +++++++.+.||..+.++|.+ .|||+|+ +.++.+.+++.+. ...++||+|+||..|+
T Consensus 122 ~~le~-~Gi~~iGps~eai~~~~DK~~ak~ll~~-------aGIPvpp~~~~v~s~eea~~~-a~~iGyPvVVKP~~Gg- 191 (1236)
T 3va7_A 122 DRCSQ-ENIVFVGPSGDAIRKLGLKHSAREIAER-------AKVPLVPGSGLIKDAKEAKEV-AKKLEYPVMVKSTAGG- 191 (1236)
T ss_dssp HHHHT-TTCEESSCCHHHHHHHHSTTHHHHHHHH-------TTCCCCC--------------------------------
T ss_pred HHHHH-CCCCeeCCCHHHHHHhcCHHHHHHHHHH-------cCCCCCCeeEecCCHHHHHHH-HHHcCCCEEEEeCCCC-
Confidence 33333 478876 899999999999999999998 6999988 4666676665443 4678999999998874
Q ss_pred CccceeeEEEeChhhhccC-------------CCceEEEeccCCCCeEEEEEEECCE---EEE-EEec-cCCCchhhhhh
Q 037279 151 SVKSHQMYLIFDSQGLESM-------------TAPFVLQEFVNHGGFIFKVYVAGMN---VKC-VKRK-SLPDISEEKLK 212 (327)
Q Consensus 151 s~~sh~m~lv~~~~~l~~l-------------~~p~vvQefI~h~g~d~KV~ViG~~---v~~-~~R~-S~~~~~~~~~~ 212 (327)
+|.+|.++.++++|... +.++++||||+. ++.+.|.|++|. ++. ..|. |...
T Consensus 192 --GGkGV~iv~s~eEL~~a~~~~~~~a~~~~~~~~vlVEeyI~G-~rEisV~vl~Dg~g~vv~l~~rd~s~qr------- 261 (1236)
T 3va7_A 192 --GGIGLQKVDSEDDIERVFETVQHQGKSYFGDAGVFMERFVNN-ARHVEIQMMGDGFGKAIAIGERDCSLQR------- 261 (1236)
T ss_dssp -------------------------------------------C-CEEEEEEEEEESSSCEEEEEEEEEEEEE-------
T ss_pred --CCCCEEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeeccCC-CeEEEEEEEecCCceEEEEeeeeeeeee-------
Confidence 46899999999887532 247999999963 489999999763 332 2221 2100
Q ss_pred hcCCccccccccccccCCcccccCCCCCCCCCccccccC-CCC--cHHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCc
Q 037279 213 SLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESV-EMP--SQSFLCELARGMREALGLN-LFNFDVMRDARDSNR 288 (327)
Q Consensus 213 ~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~l~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~ 288 (327)
.+ .+.. +..+. .++ ..+++.++|.++.+++|+. .+++|++.+.++| +
T Consensus 262 -------~~--~k~~-------------------e~~Pa~~l~~~~~~~l~~~a~~~~~alg~~G~~~VEfivd~d~g-~ 312 (1236)
T 3va7_A 262 -------RN--QKVI-------------------EETPAPNLPEATRAKMRAASERLGSLLKYKCAGTVEFIYDEQRD-E 312 (1236)
T ss_dssp -------TT--EEEE-------------------EEESCSSCCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTT-E
T ss_pred -------cC--cceE-------------------EEcCCCCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECCCC-c
Confidence 00 0100 00111 111 2457899999999999996 7789999986444 4
Q ss_pred EEEEEEcCCCC
Q 037279 289 YLIIDVNYFPG 299 (327)
Q Consensus 289 ~~VidVN~fPg 299 (327)
+|++|||.-++
T Consensus 313 ~y~iEINpRl~ 323 (1236)
T 3va7_A 313 FYFLEVNARLQ 323 (1236)
T ss_dssp EEEEEEECSCC
T ss_pred EEEEEEECCCC
Confidence 99999998875
No 66
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9
Probab=99.17 E-value=7e-10 Score=104.81 Aligned_cols=139 Identities=8% Similarity=0.038 Sum_probs=86.2
Q ss_pred EEEEEeCCccccccchhHHHHHHHhCCCeEEEeCCCCCcc--------cc---CC-c-c------EEEEccCchhHHHH-
Q 037279 11 RIGYALAPKKGQSLIQPSLLTKASERGIDLIPIDPIKPLV--------EQ---GP-F-D------CIVHKLYGPDWTRQ- 70 (327)
Q Consensus 11 ~vG~~~~~~k~~~~~~~~l~~~~~~~gi~~~~ld~~~~l~--------~q---~~-~-D------vilhk~~~~~~~~~- 70 (327)
+||.+-+. ....++.+|++.|++++.+|...+-. ++ .. + | ++..- ..+...
T Consensus 4 ~I~~lGsg------l~~~~~~aAk~lG~~viv~d~~~~~p~~~a~~~ad~~~~~~~~~dl~~~~dvitpe---~e~v~~~ 74 (320)
T 2pbz_A 4 IVSTIASH------SSLQILLGAKKEGFKTRLYVSPKRRPFYSSLPIVDDLVVAEEMTSILNDDGIVVPH---GSFVAYL 74 (320)
T ss_dssp CEEEESST------THHHHHHHHHHTTCCEEEEECTTTHHHHHTCTTCSEEEECSCSCCTTCCSSBCCCB---TTHHHHS
T ss_pred EEEEEcCH------hHHHHHHHHHHCCCEEEEEECCCCCccchhhhcCCeEEECCcHHHHHhcCCEEEec---ccchhHH
Confidence 35555544 23457789999999999999874211 11 11 2 2 21100 112211
Q ss_pred -HHHHHHhCCCCcccCcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEEEeeccCC
Q 037279 71 -LQQFSSQNPNVPIIDSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKPLVAD 149 (327)
Q Consensus 71 -l~~~~~~~p~v~Vid~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~VvKP~~~~ 149 (327)
+.. + +..+++++.+.+++....||...-++|.+ .|||+|+++. ++++ .++||+|+||..|.
T Consensus 75 ~l~~-l-e~~~~p~~p~~~~l~~~~dr~~~~~~l~~-------~Gip~P~~~~---~ee~------~i~~PviVKp~~g~ 136 (320)
T 2pbz_A 75 GIEA-I-EKAKARFFGNRRFLKWETTFELQDKALEG-------AGIPRVEVVE---PEDA------KPDELYFVRIEGPR 136 (320)
T ss_dssp CHHH-H-HTCCSCCBSCSSGGGGGSCHHHHHHHHHH-------HTCCBCCBCC---SCCC------CSSCCEEEECC---
T ss_pred HHHH-H-HHcCCCcCCCHHHHHHHHhHHHHHHHHHH-------CCcCCCCeeC---HhHc------CcCCcEEEEECCCC
Confidence 112 1 34579999999999999999988888888 5999999982 3333 48999999999973
Q ss_pred CCccceeeEEEeChhhhccCC----CceEEEeccC
Q 037279 150 GSVKSHQMYLIFDSQGLESMT----APFVLQEFVN 180 (327)
Q Consensus 150 Gs~~sh~m~lv~~~~~l~~l~----~p~vvQefI~ 180 (327)
+|+|+.++.+ ++|...- .++++||||+
T Consensus 137 ---ggkG~~~v~~-eel~~~~~~~~~~~IiEEfI~ 167 (320)
T 2pbz_A 137 ---GGSGHFIVEG-SELEERLSTLEEPYRVERFIP 167 (320)
T ss_dssp ------------C-EECSCCCC----CCEEEECCC
T ss_pred ---CCCCEEEECh-HHHHHHHHhcCCCEEEEeeec
Confidence 5799999999 9986442 5799999997
No 67
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*
Probab=99.10 E-value=5.9e-09 Score=100.02 Aligned_cols=237 Identities=13% Similarity=0.134 Sum_probs=138.0
Q ss_pred ceEEEEEeCCccccccchhHHHHHHHhCCCeEEEeCCCCCcc---ccCCccEEE-Ec-cCc---hh--------------
Q 037279 9 RFRIGYALAPKKGQSLIQPSLLTKASERGIDLIPIDPIKPLV---EQGPFDCIV-HK-LYG---PD-------------- 66 (327)
Q Consensus 9 ~~~vG~~~~~~k~~~~~~~~l~~~~~~~gi~~~~ld~~~~l~---~q~~~Dvil-hk-~~~---~~-------------- 66 (327)
..+||..-+.. ...++.+|++.|++++.+|...+-. .....|-.+ .. ..+ ..
T Consensus 18 ~~~I~ilGs~l------~~~l~~aAk~lG~~vi~vd~~~~~p~~~~~~~ad~~~~~d~~~d~~~~~~l~~l~~~~~vV~p 91 (361)
T 2r7k_A 18 EITIATLGSHT------SLHILKGAKLEGFSTVCITMKGRDVPYKRFKVADKFIYVDNFSDIKNEEIQEKLRELNSIVVP 91 (361)
T ss_dssp SCEEEEESSTT------HHHHHHHHHHTTCCEEEEECTTSCHHHHHTTCCSEEEECSSGGGGGSHHHHHHHHHTTEEECC
T ss_pred CCEEEEECcHH------HHHHHHHHHHCCCEEEEEECCCCCCcccccccCceEEECCCcccccHHHHHHHHHHcCCEEEe
Confidence 35677777652 3357899999999999999874321 111122222 12 111 11
Q ss_pred ---HHH--HHHHHHHhCCCCcccCcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcE
Q 037279 67 ---WTR--QLQQFSSQNPNVPIIDSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPV 141 (327)
Q Consensus 67 ---~~~--~l~~~~~~~p~v~Vid~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~ 141 (327)
+.. .+... .+..+++++-+.++++...||..+-++|.+ .|||||++ +.+.+ .++||+
T Consensus 92 e~~~v~~~gl~~l-~~~~g~~v~g~~~a~~~e~~k~~~k~~l~~-------~GIptp~~--~~~~~--------e~~~Pv 153 (361)
T 2r7k_A 92 HGSFIAYCGLDNV-ENSFLVPMFGNRRILRWESERSLEGKLLRE-------AGLRVPKK--YESPE--------DIDGTV 153 (361)
T ss_dssp BHHHHHHHCHHHH-HHTCCSCBBSCGGGGGTTTCHHHHHHHHHH-------TTCCCCCE--ESSGG--------GCCSCE
T ss_pred CchhhhHHHHHHH-HHHcCCCcCCCHHHHHHhhhHHHHHHHHHH-------cCcCCCCE--eCCHH--------HcCCCE
Confidence 111 11121 224578888888889999999988888888 69999986 34433 236899
Q ss_pred EEeeccCCCCccceeeEEEeChhhhccC------------C--CceEEEeccCCCCeEEEE---EE-ECCEE--EEEEec
Q 037279 142 IAKPLVADGSVKSHQMYLIFDSQGLESM------------T--APFVLQEFVNHGGFIFKV---YV-AGMNV--KCVKRK 201 (327)
Q Consensus 142 VvKP~~~~Gs~~sh~m~lv~~~~~l~~l------------~--~p~vvQefI~h~g~d~KV---~V-iG~~v--~~~~R~ 201 (327)
|+||..++ .|+|+.++.+.+++... . .++++||||+ |..+.+ |- +++++ +++.++
T Consensus 154 VVK~~~~a---~GkGv~v~~s~ee~~~a~~~~~~~~~~~~~~~~~viIEEfl~--G~e~s~~~f~~~~~~~~e~~~id~r 228 (361)
T 2r7k_A 154 IVKFPGAR---GGRGYFIASSTEEFYKKAEDLKKRGILTDEDIANAHIEEYVV--GTNFCIHYFYSPLKDEVELLGMDKR 228 (361)
T ss_dssp EEECSCCC---C---EEEESSHHHHHHHHHHHHHTTSCCHHHHHHCEEEECCC--SEEEEEEEEEETTTTEEEEEEEEEE
T ss_pred EEeeCCCC---CCCCEEEECCHHHHHHHHHHHHhccccccCCCCeEEEEeccc--eEEeeEEEEecccCCeeEEEEecce
Confidence 99998863 57999999999887422 1 4699999996 555542 11 34443 222222
Q ss_pred --cCC----CchhhhhhhcCCccccccccccccCCcccccCCCCCCCCCccccccCCC--CcHHHHHHHHHHHHHHh---
Q 037279 202 --SLP----DISEEKLKSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVEM--PSQSFLCELARGMREAL--- 270 (327)
Q Consensus 202 --S~~----~~~~~~~~~~~g~~~f~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~lA~~~~~~l--- 270 (327)
+-. .+..++-......-.|.- . | + .+..+ ...+++.++|.++.++|
T Consensus 229 ~~~~~dgi~~~~~~~~~~~~~~p~~v~-----------~--------G---~-~Pa~l~~~~~~~a~~~a~~v~~al~~~ 285 (361)
T 2r7k_A 229 YESNIDGLVRIPAKDQLEMNINPSYVI-----------T--------G---N-IPVVIRESLLPQVFEMGDKLVAKAKEL 285 (361)
T ss_dssp EEEEHHHHTTSCHHHHHTCCCCCCEEE-----------E--------E---E-EECCCCGGGHHHHHHHHHHHHHHHHHH
T ss_pred EEeecccceecchhhhhcccCCCceEE-----------e--------c---C-cCCcCCHHHHHHHHHHHHHHHHHHHhh
Confidence 100 000000000000000000 0 0 0 01111 12568899999999999
Q ss_pred ---CC-cEeEEEEEEeCCCCCcEEEEEEcCCCC
Q 037279 271 ---GL-NLFNFDVMRDARDSNRYLIIDVNYFPG 299 (327)
Q Consensus 271 ---Gl-~l~G~Dvi~~~~~g~~~~VidVN~fPg 299 (327)
|+ ..++++++++. +|+ ++|+|||.=||
T Consensus 286 ~~~~~~G~~~vE~fvt~-dg~-i~V~EIapR~g 316 (361)
T 2r7k_A 286 VPPGMIGPFCLQSLCNE-NLE-LVVFEMSARVD 316 (361)
T ss_dssp STTCCCEEEEEEEEECT-TSC-EEEEEEESSBC
T ss_pred ccCCccceEEEEEEEcC-CCC-EEEEEEcCCCC
Confidence 44 48889999874 343 89999999665
No 68
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=9.9e-13 Score=103.49 Aligned_cols=91 Identities=12% Similarity=0.225 Sum_probs=69.7
Q ss_pred HHHhcCHHHHHHHHHhcccccCCCCcCCCeEE--EEcCccchhHHHhccCCCcEEEeeccCCCCccceeeEEEeChhhhc
Q 037279 90 IERLHNRISMLEVVTQLKLHFDNEKFGVPNQV--VVSEMKSLTSIEDLKLTFPVIAKPLVADGSVKSHQMYLIFDSQGLE 167 (327)
Q Consensus 90 i~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~--~~~~~~~~~~~~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~~~~~l~ 167 (327)
+.+++||..+.++|.+ .|||+|+++ .+.+.+++.+. ...++||+|+||..+. ++.++.++.|+++|.
T Consensus 3 ~~~~~dK~~~~~~l~~-------~gip~p~~~~~~~~~~~~~~~~-~~~~~~P~vvKp~~~~---~~~gv~~v~~~~el~ 71 (108)
T 2cqy_A 3 SGSSGDKIESKLLAKK-------AEVNTIPGFDGVVKDAEEAVRI-AREIGYPVMIKASAGG---GGKGMRIAWDDEETR 71 (108)
T ss_dssp CCCCCCCCCSTTCCCS-------SCCCCCSCCCSCBSSHHHHHHH-HHHHCSSEEEEETTSC---CTTTCEEESSHHHHH
T ss_pred hhhhcCHHHHHHHHHH-------cCCCCCCCcccccCCHHHHHHH-HHhcCCCEEEEECCCC---CCccEEEeCCHHHHH
Confidence 3467888888888877 699999998 77776665443 3458999999999875 457899999998774
Q ss_pred c------------C-CCceEEEeccCCCCeEEEEEEEC
Q 037279 168 S------------M-TAPFVLQEFVNHGGFIFKVYVAG 192 (327)
Q Consensus 168 ~------------l-~~p~vvQefI~h~g~d~KV~ViG 192 (327)
. . ..++++||||+. .+++.|.|+|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~lvee~i~g-~~E~~v~v~g 108 (108)
T 2cqy_A 72 DGFRLSSQEAASSFGDDRLLIEKFIDN-PRHISGPSSG 108 (108)
T ss_dssp HHHHHHHHHHHHHTSSCCEEEEECCSS-SSCCCSCCCC
T ss_pred HHHHHHHHHHHhhcCCCcEEEeeccCC-CcEEEEEecC
Confidence 2 1 368999999974 3588877776
No 69
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A*
Probab=98.62 E-value=8.5e-07 Score=85.27 Aligned_cols=150 Identities=13% Similarity=0.180 Sum_probs=92.4
Q ss_pred HHHHHHHhCCCeEEEeCCCCCccccCCccEEEEccCchhHHHHHHHHHHhCCC-CcccCcHHHHHHhcCHHHHHHHHHhc
Q 037279 28 SLLTKASERGIDLIPIDPIKPLVEQGPFDCIVHKLYGPDWTRQLQQFSSQNPN-VPIIDSPDSIERLHNRISMLEVVTQL 106 (327)
Q Consensus 28 ~l~~~~~~~gi~~~~ld~~~~l~~q~~~Dvilhk~~~~~~~~~l~~~~~~~p~-v~Vid~~~ai~~~~dR~~~~~~L~~~ 106 (327)
.+.+.++++|. ...+..+ ...+|++...-....+. +. ..+|+ .-.||-+.....+..|..+...|.+.
T Consensus 19 ~V~~vL~~~g~-w~ev~~~-----~~~~dl~W~~~~~~p~~----~l-~~~p~~~Q~vNhfPg~~~l~rKd~L~~nl~~~ 87 (380)
T 3tig_A 19 EVAKILLASGQ-WKRLKRD-----NPKFNLMLGERNRLPFG----RL-GHEPGLVQLVNYYRGADKLCRKASLVKLIKTS 87 (380)
T ss_dssp HHHHHHHHTTS-EEECCTT-----CSCCSEEECCSSSCCGG----GS-SCSTTCCCEESCCTTTHHHHSHHHHHHHHHHC
T ss_pred HHHHHHHhcCC-eEEeCCC-----CCceeEEEecCCCCCHH----Hh-ccCCCcceEEeecCCcccccccHHHHHHHHHh
Confidence 46678899995 2223332 23578888643221111 10 11244 46889888889999999888888652
Q ss_pred ccccCCCCcCCCeEEEEc-C------------------------ccchhHHH----hccCCCcEEEeeccCCCCccceee
Q 037279 107 KLHFDNEKFGVPNQVVVS-E------------------------MKSLTSIE----DLKLTFPVIAKPLVADGSVKSHQM 157 (327)
Q Consensus 107 ~~~~~~~~i~~P~~~~~~-~------------------------~~~~~~~~----~~~l~~P~VvKP~~~~Gs~~sh~m 157 (327)
.. .....=..|+|+++. . .+++.+.. ..+-+.++|+||..+ + .|+|+
T Consensus 88 ~~-~~~~~~f~P~ty~L~P~~~~~p~~~~~~~~~~~~~~~~~~E~~~F~~~~~~~~~~~~~~~wI~KP~~~--s-rG~GI 163 (380)
T 3tig_A 88 PE-LTETCTWFPESYVIYPTNEKTPAMRARNGLPDLANAPRTDEREEFRSSFNKKKENEEGNVWIAKSSSG--A-KGEGI 163 (380)
T ss_dssp HH-HHTTCTTSCCEEECCC------------------------CCHHHHHHHHHHHHTTCCCCEEEEESCC-------CC
T ss_pred hh-cccccCcCCcceeeCccccccccccccccccccccccchhHHHHHHHHHHHhhhcCCCCeEEEeCCcc--C-CCCCE
Confidence 10 011223578888772 1 01121211 245678999999876 3 78999
Q ss_pred EEEeChhhhccC----CCceEEEeccCC------CC--eEEEEEEEC
Q 037279 158 YLIFDSQGLESM----TAPFVLQEFVNH------GG--FIFKVYVAG 192 (327)
Q Consensus 158 ~lv~~~~~l~~l----~~p~vvQefI~h------~g--~d~KV~ViG 192 (327)
.++.+.+++..+ ..++++|+||++ +| .|+|+||+-
T Consensus 164 ~l~~~~~~i~~~~~~~~~~~VvQkYI~~PlLi~~~grKFDlR~Yvlv 210 (380)
T 3tig_A 164 LISSDATELLDFIDNQGQVHVIQKYLESPLLLEPGHRKFDIRSWVLV 210 (380)
T ss_dssp BCCSCSHHHHHHHHHHTSCEEEEECCSSBCCBTTTTBCEEEEEEEEE
T ss_pred EEeCCHHHHHHHHhccCCcEEEEecccCceeecCCCceeEEEEEEEE
Confidence 999999887543 568999999986 44 599999984
No 70
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii}
Probab=98.57 E-value=5.6e-08 Score=87.55 Aligned_cols=93 Identities=12% Similarity=0.160 Sum_probs=72.5
Q ss_pred hcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEEEeeccCC--CCccceeeEE-EeChhhhccC
Q 037279 93 LHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKPLVAD--GSVKSHQMYL-IFDSQGLESM 169 (327)
Q Consensus 93 ~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~VvKP~~~~--Gs~~sh~m~l-v~~~~~l~~l 169 (327)
.+||..+.++|.+ .|||+|++.++.+.+++.+. ...++||+|+||..++ +...+.++.+ +.+++++...
T Consensus 19 ~l~k~~~k~ll~~-------~GIp~p~~~~~~~~~ea~~~-a~~lg~PvvvKp~~~~~~~r~~~gGv~~~v~~~~el~~a 90 (238)
T 1wr2_A 19 AMVEYEAKQVLKA-------YGLPVPEEKLAKTLDEALEY-AKEIGYPVVLKLMSPQILHKSDAKVVMLNIKNEEELKKK 90 (238)
T ss_dssp EECHHHHHHHHHT-------TTCCCCCCEEESSHHHHHHH-HHHHCSSEEEEEECTTCCCHHHHTCEEEEECSHHHHHHH
T ss_pred CCCHHHHHHHHHH-------cCcCCCCeEEeCCHHHHHHH-HHHhCCCEEEEEccCCCCcCCccCCEEEeCCCHHHHHHH
Confidence 5799999999998 69999999999887665443 4568999999998851 1124567777 7999887522
Q ss_pred ----------------CCceEEEeccCCCCeEEEEEEECCE
Q 037279 170 ----------------TAPFVLQEFVNHGGFIFKVYVAGMN 194 (327)
Q Consensus 170 ----------------~~p~vvQefI~h~g~d~KV~ViG~~ 194 (327)
...+++||||++ |+.+-|.+++|.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~vlVEe~i~~-g~E~~v~v~~d~ 130 (238)
T 1wr2_A 91 WEEIHENAKKYRPDAEILGVLVAPMLKP-GREVIIGVTEDP 130 (238)
T ss_dssp HHHHHHHHHHHCTTCCCCEEEEEECCCC-CEEEEEEEEEET
T ss_pred HHHHHHhhhhhCCCCccceEEEEECCCC-CeEEEEEEEeCC
Confidence 157999999984 789999999876
No 71
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=97.90 E-value=1.8e-05 Score=76.61 Aligned_cols=91 Identities=15% Similarity=0.040 Sum_probs=69.5
Q ss_pred HHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccCCCcEEEeeccCC-CCccceeeEEEeChhhhccC-----
Q 037279 96 RISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKPLVAD-GSVKSHQMYLIFDSQGLESM----- 169 (327)
Q Consensus 96 R~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P~VvKP~~~~-Gs~~sh~m~lv~~~~~l~~l----- 169 (327)
-+.+-++|.+ .|||+|++.++.+++++.+. ...++||+|+||.... |...+.++.++.+++++...
T Consensus 5 E~~aK~lL~~-------~GIpvp~~~~~~s~eea~~a-a~~lG~PvVvKa~~~~ggkg~~GGV~l~~s~ee~~~a~~~~~ 76 (397)
T 3ufx_B 5 EYQAKEILAR-------YGVPVPPGKVAYTPEEAKRI-AEEFGKRVVIKAQVHVGGRGKAGGVKLADTPQEAYEKAQAIL 76 (397)
T ss_dssp HHHHHHHHHH-------TTCCCCCEEEESSHHHHHHH-HHHHTSCEEEEECCSSSCTTTTTCEEEESSHHHHHHHHHHHT
T ss_pred HHHHHHHHHH-------CCCCCCCeEEECCHHHHHHH-HHHcCCCEEEEEccccCCCCccceEEEeCCHHHHHHHHHHhh
Confidence 3456677877 79999999999997776553 4567899999998731 23356799999999777421
Q ss_pred --------CCceEEEeccCCCCeEEEEEEECCEE
Q 037279 170 --------TAPFVLQEFVNHGGFIFKVYVAGMNV 195 (327)
Q Consensus 170 --------~~p~vvQefI~h~g~d~KV~ViG~~v 195 (327)
...+++|||+++ |+.+-|.++.|..
T Consensus 77 ~~~~~g~~~~~vlVEe~v~~-g~El~vgv~~D~~ 109 (397)
T 3ufx_B 77 GMNIKGLTVKKVLVAEAVDI-AKEYYAGLILDRA 109 (397)
T ss_dssp TCEETTEECCCEEEEECCCE-EEEEEEEEEEETT
T ss_pred hhhccCCccceEEEEEeecC-CeeEEEEEEecCC
Confidence 147999999975 7899999988765
No 72
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=97.89 E-value=1.8e-05 Score=76.50 Aligned_cols=93 Identities=6% Similarity=0.023 Sum_probs=71.3
Q ss_pred cCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccCCCc-EEEeeccCCC-CccceeeEEEeChhhhccC--
Q 037279 94 HNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFP-VIAKPLVADG-SVKSHQMYLIFDSQGLESM-- 169 (327)
Q Consensus 94 ~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~P-~VvKP~~~~G-s~~sh~m~lv~~~~~l~~l-- 169 (327)
.+++.+-++|.+ .|||+|++.++.+.+++.+. ...++|| +|+||....| ...+.++.++.+++++...
T Consensus 3 l~E~~aK~lL~~-------~GIpvp~~~~~~s~eea~~a-a~~lG~P~vVvK~~~~~ggrg~~gGV~l~~s~eel~~a~~ 74 (388)
T 2nu8_B 3 LHEYQAKQLFAR-------YGLPAPVGYACTTPREAEEA-ASKIGAGPWVVKCQVHAGGRGKAGGVKVVNSKEDIRAFAE 74 (388)
T ss_dssp CCHHHHHHHHHH-------TTCCCCCEEEESSHHHHHHH-HHHHCSSCEEEEECCSSSCTTTTTCEEEECSHHHHHHHHH
T ss_pred CCHHHHHHHHHH-------CCcCCCCeeEECCHHHHHHH-HHHhCCCeEEEEEecCCCCCCccCCEEEECCHHHHHHHHH
Confidence 356777888888 69999999999987766543 4568999 9999987422 2256799999998776411
Q ss_pred ------------------CCceEEEeccCCCCeEEEEEEECCEE
Q 037279 170 ------------------TAPFVLQEFVNHGGFIFKVYVAGMNV 195 (327)
Q Consensus 170 ------------------~~p~vvQefI~h~g~d~KV~ViG~~v 195 (327)
..++++|+|+++ ++.+-|.++.|+.
T Consensus 75 ~~~~~~~~t~q~g~~g~~~~~vlVEe~v~~-~~E~~v~v~~D~~ 117 (388)
T 2nu8_B 75 NWLGKRLVTYQTDANGQPVNQILVEAATDI-AKELYLGAVVDRS 117 (388)
T ss_dssp HHTTSEECCTTSCTTCEECCCEEEEECCCE-EEEEEEEEEEETT
T ss_pred HHhhhhhhccccCCCCcccceEEEEEcccc-CCcEEEEEEEecc
Confidence 136999999985 6889998888764
No 73
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=97.74 E-value=5.6e-05 Score=73.11 Aligned_cols=91 Identities=10% Similarity=0.082 Sum_probs=68.1
Q ss_pred CHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhccCCC-cEEEeeccCCCCccc---------eeeEEEeChh
Q 037279 95 NRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTF-PVIAKPLVADGSVKS---------HQMYLIFDSQ 164 (327)
Q Consensus 95 dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~l~~-P~VvKP~~~~Gs~~s---------h~m~lv~~~~ 164 (327)
+.+.+-++|.+ .|||+|++.++.+.+++.+. ...++| |+|+||...+|+ .+ -++.++.+++
T Consensus 4 ~E~~aK~lL~~-------~GIpvp~~~~~~s~~ea~~~-a~~lg~~PvVvK~~i~~GG-rGKg~~ks~~~GGV~l~~s~~ 74 (395)
T 2fp4_B 4 QEYQSKKLMSD-------NGVKVQRFFVADTANEALEA-AKRLNAKEIVLKAQILAGG-RGKGVFSSGLKGGVHLTKDPE 74 (395)
T ss_dssp CHHHHHHHHHH-------TTCCCCCEEEESSHHHHHHH-HHHHTCSSEEEEECCSSSC-GGGCEETTSCBCSEEEESCHH
T ss_pred CHHHHHHHHHH-------CCcCCCCeEEECCHHHHHHH-HHHcCCCcEEEEEeeccCC-CccCccccCCcCCEEEECCHH
Confidence 45667778887 69999999999987776554 356899 899999754433 22 4589999987
Q ss_pred hhcc----C----------------CCceEEEeccCCCCeEEEEEEECCEE
Q 037279 165 GLES----M----------------TAPFVLQEFVNHGGFIFKVYVAGMNV 195 (327)
Q Consensus 165 ~l~~----l----------------~~p~vvQefI~h~g~d~KV~ViG~~v 195 (327)
++.. + ...+++|||++. ++.+-|.++.|+.
T Consensus 75 e~~~a~~~~l~~~~~t~q~g~~g~~~~~vlVEe~v~~-~~E~~v~i~~D~~ 124 (395)
T 2fp4_B 75 VVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDI-SRETYLAILMDRS 124 (395)
T ss_dssp HHHHHHHTTTTSEEECTTSCTTCEECCCEEEEECCCC-SEEEEEEEEEETT
T ss_pred HHHHHHHHHhhcchhhhccCCCCCccceEEEEEccCC-ceeEEEEEEEccc
Confidence 7641 1 025999999974 7889998888764
No 74
>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP: c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A* 2iob_A 3o98_A*
Probab=97.61 E-value=0.00038 Score=70.96 Aligned_cols=173 Identities=10% Similarity=0.043 Sum_probs=106.2
Q ss_pred EEEEEeCCccccccchhHHHHHHHhCCCeEEEeC-CCCC-cccc--------CCccEEEEccCchhHH-HH---------
Q 037279 11 RIGYALAPKKGQSLIQPSLLTKASERGIDLIPID-PIKP-LVEQ--------GPFDCIVHKLYGPDWT-RQ--------- 70 (327)
Q Consensus 11 ~vG~~~~~~k~~~~~~~~l~~~~~~~gi~~~~ld-~~~~-l~~q--------~~~Dvilhk~~~~~~~-~~--------- 70 (327)
+|..+....-++.....-|.++|++.|++...++ ++.- +... .++|++.- +..-+|. ..
T Consensus 381 ~v~~a~~~~~Ed~~t~~~L~~~a~eaG~~~~~~~~i~dl~~~~~G~l~d~dg~~I~~lfk-lypwE~m~~~~~~~~~~~~ 459 (619)
T 2io8_A 381 FVHIMQDKDIEENYHAQFMEQALHQAGFETRILRGLDELGWDAAGQLIDGEGRLVNCVWK-TWAWETAFDQIREVSDREF 459 (619)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEESSTTCEECSSSCEECTTSCBCCEEEE-SSCHHHHHHHHHHC---CC
T ss_pred EEEEEecCCccchHHHHHHHHHHHHCCCceEEecchHhEEECCCCcEECCCCCEeeeEEe-cCCHHHHHHHhhhhccccc
Confidence 4555544443555555668899999999999997 6632 1111 15566655 4322222 22
Q ss_pred ---------------HHHHHHhCCCCcccCcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhc
Q 037279 71 ---------------LQQFSSQNPNVPIIDSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDL 135 (327)
Q Consensus 71 ---------------l~~~~~~~p~v~Vid~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~ 135 (327)
+.+++ +..++++|+|+.++. +.||..+ .+|.++-.. .. -.++|..-.+. . +..
T Consensus 460 ~~~~~~~g~~~~g~~ll~~l-~~~~v~iieP~~~~l-lsNKail-alLw~l~p~---hp-~LLpT~f~~~~-~----l~~ 527 (619)
T 2io8_A 460 AAVPIRTGHPQNEVRLIDVL-LRPEVLVFEPLWTVI-PGNKAIL-PILWSLFPH---HR-YLLDTDFTVND-E----LVK 527 (619)
T ss_dssp SSCCCCSCCSSCCCCHHHHH-TCTTCEEESCGGGGT-TTSTTHH-HHHHHHSTT---CT-TCCCEESSCCH-H----HHH
T ss_pred ccccccccCccchHHHHHHH-HhCCCEEECHHHHHH-hhhHHHH-HHHHHhCCC---CC-CCCCeeecCCc-c----ccc
Confidence 22222 346799999999977 9999554 444442100 01 12345422121 1 111
Q ss_pred cCCCcEEEeeccCCCCccceeeEEEeC-hhhhccC-----CCceEEEeccCCCCeE-----EEEEEECCEEEE-EEecc
Q 037279 136 KLTFPVIAKPLVADGSVKSHQMYLIFD-SQGLESM-----TAPFVLQEFVNHGGFI-----FKVYVAGMNVKC-VKRKS 202 (327)
Q Consensus 136 ~l~~P~VvKP~~~~Gs~~sh~m~lv~~-~~~l~~l-----~~p~vvQefI~h~g~d-----~KV~ViG~~v~~-~~R~S 202 (327)
. ..|+||+.|- ++.+|.++.. .+.+... +.++++|||++-+.++ +-+|++||++.+ ..|.+
T Consensus 528 ~---~yV~KPi~gR---eG~nV~i~~~~~~~~~~~~~~y~~~~~IyQe~~~lp~~d~~~~~iG~f~vgg~~aG~~~R~~ 600 (619)
T 2io8_A 528 T---GYAVKPIAGR---CGSNIDLVSHHEEVLDKTSGKFAEQKNIYQQLWCLPKVDGKYIQVCTFTVGGNYGGTCLRGD 600 (619)
T ss_dssp H---CEEEEETTCC---TTTTCEEECTTSCEEEECCCTTTTSCEEEEECCCCCEETTEEEEEEEEEETTEEEEEEEEEE
T ss_pred C---CEEEccCCCC---CCCCEEEEeCCChhHhhccccccCCCeEEEEecCCCCcCCcceEEEEEEECCEEEEEEEecC
Confidence 1 4999999973 6778999876 2222221 3678999999988777 999999999987 56876
No 75
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=94.98 E-value=0.0096 Score=58.64 Aligned_cols=131 Identities=15% Similarity=0.161 Sum_probs=72.9
Q ss_pred CccEEEEccCchhH-------------HHHHHHHHHhCCCCcccCcHHHHHHhcCHHHHHHHHHhcc---cccCCCCcCC
Q 037279 54 PFDCIVHKLYGPDW-------------TRQLQQFSSQNPNVPIIDSPDSIERLHNRISMLEVVTQLK---LHFDNEKFGV 117 (327)
Q Consensus 54 ~~Dvilhk~~~~~~-------------~~~l~~~~~~~p~v~Vid~~~ai~~~~dR~~~~~~L~~~~---~~~~~~~i~~ 117 (327)
++|+|+.|+.+... ...++.|.+ .+|.++|++.+- .+.||. .+..|.++. +.. ..-++.
T Consensus 269 ~VDVIyRRvdd~~lDpl~~~~dS~lGv~gLl~A~r~--G~V~i~Na~gsg-v~~dKa-l~a~Lp~l~~~~lgE-e~il~~ 343 (474)
T 3n6x_A 269 RVDVIYRRIDDDFIDPLSFRPDSMLGVPGLLSVYRN--GGVTLANAVGTG-VADDKD-TYIYVPEMIRFYLGE-EPILSN 343 (474)
T ss_dssp EECEEEECSCGGGSCTTTSCTTCSSSCTTHHHHHHT--TSCEEESCTTTH-HHHSTT-TGGGHHHHHHHHHCS-CCSSEE
T ss_pred EEEEEEEcCCHHhcCccccCCCcccccHHHHHHHHc--CCEEEeCCCchh-hhcCcH-HHHHhHHHHHHhCCH-hhhccC
Confidence 79999999965310 234555532 469999999885 888885 333332211 000 012222
Q ss_pred CeEEEEcCccchhHHHhccCCCcEEEeeccCCCCccceeeEEEe--Chhhhcc----C-CCc--eEEEeccCCC------
Q 037279 118 PNQVVVSEMKSLTSIEDLKLTFPVIAKPLVADGSVKSHQMYLIF--DSQGLES----M-TAP--FVLQEFVNHG------ 182 (327)
Q Consensus 118 P~~~~~~~~~~~~~~~~~~l~~P~VvKP~~~~Gs~~sh~m~lv~--~~~~l~~----l-~~p--~vvQefI~h~------ 182 (327)
-+|+.+.++++....+ .++. -+|+||..|.| +.+|.+-. +.++... + ..| +++||+|+-+
T Consensus 344 VpT~~c~~~~~~~~vl-~~l~-~lViKp~~g~g---g~gv~iG~~~s~~e~~~~~~~i~~~p~~yIaQe~v~ls~~P~~~ 418 (474)
T 3n6x_A 344 VPTYQLSKADDLKYVL-DNLA-ELVVKEVQGSG---GYGMLVGPAASKQELEDFRQRILANPANYIAQPTLALSTCPTLV 418 (474)
T ss_dssp CCCEETTSHHHHHHHH-HSGG-GEEEEECCCE--------EEGGGCCHHHHHHHHHHHHHSGGGEEEEECCCCCEEEEEE
T ss_pred CCceecCCHHHHHHHH-hchh-heEEEecCCCC---CCceEECCcCCHHHHHHHHHHHHhCCCCEEEeeccCCcccceee
Confidence 2345555555544433 2222 59999999754 46776532 2333333 2 357 9999999742
Q ss_pred -C------eEEEEEEE-CCE
Q 037279 183 -G------FIFKVYVA-GMN 194 (327)
Q Consensus 183 -g------~d~KV~Vi-G~~ 194 (327)
| .|+|+|++ |+.
T Consensus 419 ~~~~~~r~~dlR~F~~~g~~ 438 (474)
T 3n6x_A 419 ETGIAPRHVDLRPFVLSGKT 438 (474)
T ss_dssp TTEEEEEEEEEECEEEESSS
T ss_pred CCceeeeeEEEEEEEEcCCc
Confidence 2 58899988 443
No 76
>2vob_A Trypanothione synthetase; ligase; 2.3A {Leishmania major} PDB: 2vps_A 2vpm_A
Probab=94.44 E-value=0.38 Score=49.14 Aligned_cols=173 Identities=8% Similarity=0.003 Sum_probs=89.5
Q ss_pred EEEEEeCCccccccchhHHHHHHHhCCCeEEEeC-CCCC-ccc-------c-CCccEEEEccCchhHHHH----------
Q 037279 11 RIGYALAPKKGQSLIQPSLLTKASERGIDLIPID-PIKP-LVE-------Q-GPFDCIVHKLYGPDWTRQ---------- 70 (327)
Q Consensus 11 ~vG~~~~~~k~~~~~~~~l~~~~~~~gi~~~~ld-~~~~-l~~-------q-~~~Dvilhk~~~~~~~~~---------- 70 (327)
+|..+....-++.....-|.+.|++.|++...++ ++.- +.+ + .++|++.- +..-+|...
T Consensus 397 ~v~~~~~~~~ED~~t~~yL~~~a~eaG~~t~~~~~i~dL~~~~~G~l~D~~g~~Id~lfK-LyPwE~m~~~~~~~~~~~~ 475 (652)
T 2vob_A 397 RVHFCVDEEREEQYTALYCMQAAEAVGLEGKLCILFDEFRFDDNGHVVDSDGVRVRNVWK-TWMWESAITDYYAAREERG 475 (652)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEETTTTCEECTTSCEECTTSCBCCEEEE-CSCHHHHHHHHHHHHHHHC
T ss_pred EEEEEeCCchHHHHHHHHHHHHHHHCCCcEEEecchhheEECCCCcEECCCCcEeeEEEe-cCCHHHHHHhhhhcccccc
Confidence 4555533332444444457889999999999987 5531 111 1 26777776 554333211
Q ss_pred ------------HHHHHHhCC--CCcccCcHHHHHHhcCHHHHHHHHHhcccccCCCCcCCCeEEEEcCccchhHHHhcc
Q 037279 71 ------------LQQFSSQNP--NVPIIDSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLK 136 (327)
Q Consensus 71 ------------l~~~~~~~p--~v~Vid~~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~ 136 (327)
+.+.+ +.. .+.+|||+.+ .++.|| ..+.+|.++-.. ..- .+++. ++. +.... ..
T Consensus 476 ~~~~g~p~~g~~~~~~l-~~~~~~v~~ieP~wk-~LlsNK-aiLalLW~l~p~---hp~-LLpt~-f~~-~~~~~--~~- 543 (652)
T 2vob_A 476 ENWKPSPKDKVRLCDLL-LGDDWEILYFEPMWK-VIPSNK-AILPMIYHNHPE---HPA-ILKAE-YEL-TDELR--KH- 543 (652)
T ss_dssp SSCCCCTTSBCCHHHHH-SSSCTTSEEESCGGG-GTTTST-THHHHHHHHCTT---CTT-BCCEE-SSC-CHHHH--HH-
T ss_pred cccccCccchhHHHHHH-hcCCCceEEeChhHH-HhhcCH-HHHHHHHhcccC---CCC-CCchh-hcC-CCccc--cC-
Confidence 11222 235 7999999854 567888 556666653211 111 23333 221 11111 12
Q ss_pred CCCcEEEeeccCCCCccceeeEEEeChhh-hccC-----CCceEEEeccCCC-----CeEEEEEEECCEEEE-EEecc
Q 037279 137 LTFPVIAKPLVADGSVKSHQMYLIFDSQG-LESM-----TAPFVLQEFVNHG-----GFIFKVYVAGMNVKC-VKRKS 202 (327)
Q Consensus 137 l~~P~VvKP~~~~Gs~~sh~m~lv~~~~~-l~~l-----~~p~vvQefI~h~-----g~d~KV~ViG~~v~~-~~R~S 202 (327)
..|.||..|- ++.++.+..+... .... +.++|+|||++-+ -..+=+|++||+..+ ..|-+
T Consensus 544 ---~yV~KPi~gR---eG~nV~I~~~~~~~~~~~~g~y~~~~~IyQe~~~lp~f~~~~~~iG~~lvg~~~aGi~iR~~ 615 (652)
T 2vob_A 544 ---GYAKKPIVGR---VGSNVIITSGDGVVHAESGGKYGKRNMIYQQLFELKKQDDYYAIIGGWMIGDAFSGTGIRED 615 (652)
T ss_dssp ---CEEEEECC------------------------------CEEEEECCC--CBTTBCCEEEEEEETTEEEEEEEEC-
T ss_pred ---CeEeccCCCC---CCCCEEEEcCCchhhhhcccccCCCCeEEEecccCCccCCcceEEEEEEECCEEEEEEEecC
Confidence 4999999973 6678888754322 1111 3689999999853 257889999999988 56876
No 77
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A*
Probab=92.36 E-value=0.4 Score=46.49 Aligned_cols=81 Identities=16% Similarity=0.080 Sum_probs=57.8
Q ss_pred cCCCeEEEEcCccchhHHH--hccCC-CcEEEeeccCC-CCccceeeEEEeChhhhccC-----------C------Cce
Q 037279 115 FGVPNQVVVSEMKSLTSIE--DLKLT-FPVIAKPLVAD-GSVKSHQMYLIFDSQGLESM-----------T------APF 173 (327)
Q Consensus 115 i~~P~~~~~~~~~~~~~~~--~~~l~-~P~VvKP~~~~-Gs~~sh~m~lv~~~~~l~~l-----------~------~p~ 173 (327)
+..|++.++.++.+..++. ...++ ||+|+|+..-. |-..+-++.+..+++++... . .-+
T Consensus 26 ~~~~~~~~~~~~~~~~eA~~~a~~lg~~pvVvKaqv~~ggRgk~GGV~l~~s~eev~~aa~~ml~~~~~~~~~~~~v~~v 105 (425)
T 3mwd_A 26 QNRFKYARVTPDTDWARLLQDHPWLLSQNLVVKPDQLIKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNF 105 (425)
T ss_dssp CSTTCCEEECTTCCHHHHHHHCGGGGTSCEEEEECSSCSCTTTTTCCEEEECHHHHHHHHTTTTTCEEEETTEEEECCCE
T ss_pred cCCcceEEeCCCCCHHHHHHHHHHhCCCCEEEEeccccCCCCcCCeEEEECCHHHHHHHHHHHHhhhhhccCCCceEEEE
Confidence 4666788888877766554 56677 99999997732 33456788888888776421 0 238
Q ss_pred EEEeccCCC-CeEEEEEEECCEE
Q 037279 174 VLQEFVNHG-GFIFKVYVAGMNV 195 (327)
Q Consensus 174 vvQefI~h~-g~d~KV~ViG~~v 195 (327)
++|++++|+ ++.+-+-+.=|+.
T Consensus 106 lVe~~~~~~~~~E~ylgi~~Dr~ 128 (425)
T 3mwd_A 106 LIEPFVPHSQAEEFYVCIYATRE 128 (425)
T ss_dssp EEEECCCCCGGGEEEEEEEEETT
T ss_pred EEEecccCCCCceEEEEEEecCC
Confidence 999999986 6888877776654
No 78
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}
Probab=84.63 E-value=1.8 Score=45.30 Aligned_cols=80 Identities=18% Similarity=0.107 Sum_probs=56.3
Q ss_pred CCCeEEEEcCccchhHHH--hccCC-CcEEEeeccCC-CCccceeeEEEeChhhhccC---------C--------CceE
Q 037279 116 GVPNQVVVSEMKSLTSIE--DLKLT-FPVIAKPLVAD-GSVKSHQMYLIFDSQGLESM---------T--------APFV 174 (327)
Q Consensus 116 ~~P~~~~~~~~~~~~~~~--~~~l~-~P~VvKP~~~~-Gs~~sh~m~lv~~~~~l~~l---------~--------~p~v 174 (327)
..|++.++.++++..++. ...++ ||+|+|+..-. |...+-++.+..+.++.... . .-++
T Consensus 27 ~~~~~~~v~~~~~~~eA~~aa~~lg~~pvVvKaQv~~GgRGKaGGVkL~~s~eEa~~aa~~iLg~~~~~~~p~~~V~gvL 106 (829)
T 3pff_A 27 NRFKYARVTPDTDWARLLQDHPWLLSQNLVVKPDQLIKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNFL 106 (829)
T ss_dssp STTCCEEECTTCCHHHHHHHCTHHHHSCEEEEECSSCSCTTTTTCCEEEECHHHHHHHHTTTTTCEEEETTEEEECCCEE
T ss_pred cCCceEEeCCCCCHHHHHHHHHHhCCCCEEEEecccccCCCcCCeEEEECCHHHHHHHHHHHHHHHHhhcCCCceEEEEE
Confidence 367888888877666544 34555 99999997643 33455688888898776421 1 2389
Q ss_pred EEeccCCC-CeEEEEEEECCEE
Q 037279 175 LQEFVNHG-GFIFKVYVAGMNV 195 (327)
Q Consensus 175 vQefI~h~-g~d~KV~ViG~~v 195 (327)
+|++++|+ ++.|-+-+.=|+.
T Consensus 107 VE~m~~~~~~~ElYvgI~~Dr~ 128 (829)
T 3pff_A 107 IEPFVPHSQAEEFYVCIYATRE 128 (829)
T ss_dssp EEECCCCCGGGEEEEEEEEETT
T ss_pred EEecccCCCccEEEEEEEecCC
Confidence 99999986 7888887776654
No 79
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=45.16 E-value=35 Score=29.33 Aligned_cols=45 Identities=16% Similarity=0.000 Sum_probs=27.9
Q ss_pred CCccccCCceEEEEEeCCccccc--cchhHHHHHHHhCCCeEEEeCCCC
Q 037279 1 MSTQSQCQRFRIGYALAPKKGQS--LIQPSLLTKASERGIDLIPIDPIK 47 (327)
Q Consensus 1 ~~~~~~~~~~~vG~~~~~~k~~~--~~~~~l~~~~~~~gi~~~~ld~~~ 47 (327)
||. +++..+||+.++.....- -....+.++++++|+++...+...
T Consensus 1 ~s~--~~~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~ 47 (276)
T 3jy6_A 1 MSL--TQSSKLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFDANA 47 (276)
T ss_dssp ------CCCCEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEECTT
T ss_pred CCc--CCCCcEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 554 556789999998753111 112345667889999998887654
No 80
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=37.91 E-value=1.3e+02 Score=22.80 Aligned_cols=82 Identities=11% Similarity=0.077 Sum_probs=50.1
Q ss_pred ccccchhHHHHHHHhCCCeEEEeC--CCCCccc-cCCccEEEEccCchhHHHHHHHHHHhC-CCCcccCcHHHHHHhcCH
Q 037279 21 GQSLIQPSLLTKASERGIDLIPID--PIKPLVE-QGPFDCIVHKLYGPDWTRQLQQFSSQN-PNVPIIDSPDSIERLHNR 96 (327)
Q Consensus 21 ~~~~~~~~l~~~~~~~gi~~~~ld--~~~~l~~-q~~~Dvilhk~~~~~~~~~l~~~~~~~-p~v~Vid~~~ai~~~~dR 96 (327)
--++...++.++++++|+++...- ... +.+ ...+|++|---.-......+++....+ -.|.|||+.+-....+|=
T Consensus 18 STsllv~km~~~a~~~gi~v~i~a~~~~~-~~~~~~~~DvvLLgPQV~y~~~~ik~~~~~~~ipV~vI~~~~Yg~~~~~g 96 (108)
T 3nbm_A 18 TSAQLANAINEGANLTEVRVIANSGAYGA-HYDIMGVYDLIILAPQVRSYYREMKVDAERLGIQIVATRGMEYIHLTKSP 96 (108)
T ss_dssp HHHHHHHHHHHHHHHHTCSEEEEEEETTS-CTTTGGGCSEEEECGGGGGGHHHHHHHHTTTTCEEEECCHHHHHHHHTCH
T ss_pred CHHHHHHHHHHHHHHCCCceEEEEcchHH-HHhhccCCCEEEEChHHHHHHHHHHHHhhhcCCcEEEeCHHHhhhhhCCH
Confidence 445566778899999998876632 332 222 235899997543223345555554432 347789988777666776
Q ss_pred HHHHHHH
Q 037279 97 ISMLEVV 103 (327)
Q Consensus 97 ~~~~~~L 103 (327)
-..+...
T Consensus 97 ~~vl~~~ 103 (108)
T 3nbm_A 97 SKALQFV 103 (108)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
No 81
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=37.28 E-value=32 Score=26.14 Aligned_cols=67 Identities=13% Similarity=0.030 Sum_probs=38.9
Q ss_pred ccchhHHHHHHHhCCCeE--EEeCCCCCccccCCccEEEEccCchhHHHHHHHHHHhCCCCcccCcHHHH
Q 037279 23 SLIQPSLLTKASERGIDL--IPIDPIKPLVEQGPFDCIVHKLYGPDWTRQLQQFSSQNPNVPIIDSPDSI 90 (327)
Q Consensus 23 ~~~~~~l~~~~~~~gi~~--~~ld~~~~l~~q~~~Dvilhk~~~~~~~~~l~~~~~~~p~v~Vid~~~ai 90 (327)
++....+.++++++|+++ ...+...--.....+|+++.-..-......+++.... -+++|||+..-.
T Consensus 17 S~l~~k~~~~~~~~gi~~~i~a~~~~~~~~~~~~~Dvil~~pqv~~~~~~~~~~~~~-~~v~vI~~~~yg 85 (106)
T 1e2b_A 17 SLLVSKMRAQAEKYEVPVIIEAFPETLAGEKGQNADVVLLGPQIAYMLPEIQRLLPN-KPVEVIDSLLYG 85 (106)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEEECSSSTTHHHHHCSEEEECTTSGGGHHHHHHHSSS-SCCCBCCHHHHT
T ss_pred HHHHHHHHHHHHHCCCCeEEEEecHHHHHhhccCCCEEEEccchhhhHHHHHHHhcC-CCceEECHHHcc
Confidence 355567888999999864 3344443222123579999554322334444443323 369999976653
No 82
>3k1t_A Glutamate--cysteine ligase GSHA; putative gamma-glutamylcysteine synthetase; HET: MSE; 1.90A {Methylobacillus flagellatus KT}
Probab=36.07 E-value=1.3e+02 Score=28.76 Aligned_cols=58 Identities=17% Similarity=0.099 Sum_probs=44.8
Q ss_pred EEEeeccCCCCccceeeEEEeChhhhccCC----------------CceEEEeccCCCC------eEEEEEEECCEEEE-
Q 037279 141 VIAKPLVADGSVKSHQMYLIFDSQGLESMT----------------APFVLQEFVNHGG------FIFKVYVAGMNVKC- 197 (327)
Q Consensus 141 ~VvKP~~~~Gs~~sh~m~lv~~~~~l~~l~----------------~p~vvQefI~h~g------~d~KV~ViG~~v~~- 197 (327)
++||...| + -+-|+..|.+.+++..++ .-+++||=|.+-- -.-=||.||..+++
T Consensus 280 V~VKADaG--T-YGMGImtV~s~~ev~~LNrK~RnKM~~~Keg~~v~~VIIQEGV~T~E~~~~avAEPVVYmid~~vvGg 356 (432)
T 3k1t_A 280 VIVKADAG--T-YGMGIMTVKSADDVRDLNRKQRNKMSVVKEGLKVSEVILQEGVYTFEHLKDAVAEPVIYMMDHFVVGG 356 (432)
T ss_dssp EEEEEECG--G-GCEEEEEESSGGGGSSCCHHHHHHHHCSSSSSCCCEEEEEECCCCCEEETTEEEEEEEEEETTEEEEE
T ss_pred EEEEcCCC--C-CCceEEEecCHHHHHHHhHHhhhhhhhccCCCccceEEEecCcchhhhhCCccccceEEEECCEEEEE
Confidence 78997765 5 778889999999997763 2499999887531 24459999999987
Q ss_pred EEec
Q 037279 198 VKRK 201 (327)
Q Consensus 198 ~~R~ 201 (327)
.+|.
T Consensus 357 FyRv 360 (432)
T 3k1t_A 357 FYRV 360 (432)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6776
No 83
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=34.53 E-value=59 Score=27.76 Aligned_cols=52 Identities=17% Similarity=0.108 Sum_probs=34.2
Q ss_pred CCceEEEEEeCCcccccc--chhHHHHHHHhCCCeEEEeCCCCCcccc---------CCccEEE
Q 037279 7 CQRFRIGYALAPKKGQSL--IQPSLLTKASERGIDLIPIDPIKPLVEQ---------GPFDCIV 59 (327)
Q Consensus 7 ~~~~~vG~~~~~~k~~~~--~~~~l~~~~~~~gi~~~~ld~~~~l~~q---------~~~Dvil 59 (327)
++..+||+.++.....-+ ....+.++++++|+++...+.. +...+ ..+|.+|
T Consensus 3 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiI 65 (280)
T 3gyb_A 3 LRTQLIAVLIDDYSNPWFIDLIQSLSDVLTPKGYRLSVIDSL-TSQAGTDPITSALSMRPDGII 65 (280)
T ss_dssp -CCCEEEEEESCTTSGGGHHHHHHHHHHHGGGTCEEEEECSS-SSCSSSCHHHHHHTTCCSEEE
T ss_pred CccCEEEEEeCCCCChHHHHHHHHHHHHHHHCCCEEEEEeCC-CchHHHHHHHHHHhCCCCEEE
Confidence 345799999987532111 1233566788999999999887 43321 3678888
No 84
>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}
Probab=31.61 E-value=1.3e+02 Score=27.76 Aligned_cols=72 Identities=13% Similarity=0.138 Sum_probs=46.5
Q ss_pred CceEEEEEeCCcc-ccccchhHHHHHHHhCCCeEEEeCCCCCccccC------------CccEEEEccCchhHHHHHHHH
Q 037279 8 QRFRIGYALAPKK-GQSLIQPSLLTKASERGIDLIPIDPIKPLVEQG------------PFDCIVHKLYGPDWTRQLQQF 74 (327)
Q Consensus 8 ~~~~vG~~~~~~k-~~~~~~~~l~~~~~~~gi~~~~ld~~~~l~~q~------------~~Dvilhk~~~~~~~~~l~~~ 74 (327)
...+|+.+|.+.= +-+. +|-.++.+.|-.++.++++..-...| =+|+|+-|...+.....+.+
T Consensus 62 ~gk~la~lF~e~STRTR~---SFE~A~~~LGg~~i~l~~~~ssl~kgEsl~DTarvLs~~~D~IviR~~~~~~~~~lA~- 137 (339)
T 4a8t_A 62 KNKSLGMIFQQSSTRTRV---SFETAMEQLGGHGEYLAPGQIQLGGHETIEDTSRVLSRLVDILMARVERHHSIVDLAN- 137 (339)
T ss_dssp TTCEEEEEESSCCSHHHH---HHHHHHHHTTCEEEEECCC-CCSSSSSCHHHHHHHHHHHCSEEEEECSSHHHHHHHHH-
T ss_pred CCceEEEEecCCCchHHH---HHHHHHHHcCCeEEEeCcccccCCCCcCHHHHHHHHHHhCCEEEEecCcHHHHHHHHH-
Confidence 4678888886532 3222 35578899999999998763211111 16999999876554444444
Q ss_pred HHhCCCCcccCc
Q 037279 75 SSQNPNVPIIDS 86 (327)
Q Consensus 75 ~~~~p~v~Vid~ 86 (327)
+.++||||=
T Consensus 138 ---~~~vPVINa 146 (339)
T 4a8t_A 138 ---CATIPVING 146 (339)
T ss_dssp ---HCSSCEEEC
T ss_pred ---hCCCCEEEC
Confidence 457999993
No 85
>2xko_C PIPX, global nitrogen regulator; transcription, nitrogen assimilation, CRP/FNR superfamily, 2-oxoglutarate, global nitrogen controller; HET: AKG; 2.25A {Synechococcus elongatus} PDB: 2xg8_D*
Probab=31.09 E-value=13 Score=27.78 Aligned_cols=20 Identities=20% Similarity=0.630 Sum_probs=16.5
Q ss_pred EeccCCC--CeEEEEEEECCEE
Q 037279 176 QEFVNHG--GFIFKVYVAGMNV 195 (327)
Q Consensus 176 QefI~h~--g~d~KV~ViG~~v 195 (327)
+.|+||+ |-+|+|..+|+.-
T Consensus 4 E~YLNHPtFGlLy~Vc~~~e~~ 25 (89)
T 2xko_C 4 ENYLNHPTFGLLYQICSFGDSK 25 (89)
T ss_dssp CCEEEETTTEEEEEEEECC-CC
T ss_pred cccccCCccchhheeeeCCCcc
Confidence 5699998 8999999999864
No 86
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=31.00 E-value=88 Score=26.73 Aligned_cols=41 Identities=12% Similarity=0.053 Sum_probs=27.9
Q ss_pred CceEEEEEeCCcccccc--chhHHHHHHHhCCCeEEEeCCCCC
Q 037279 8 QRFRIGYALAPKKGQSL--IQPSLLTKASERGIDLIPIDPIKP 48 (327)
Q Consensus 8 ~~~~vG~~~~~~k~~~~--~~~~l~~~~~~~gi~~~~ld~~~~ 48 (327)
+..+||+.++.....-+ ....+.++++++|+++...+....
T Consensus 4 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~ 46 (291)
T 3l49_A 4 EGKTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDAGRN 46 (291)
T ss_dssp TTCEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEECTTC
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence 45789999996532111 233467788999999998876543
No 87
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=28.29 E-value=82 Score=27.44 Aligned_cols=56 Identities=16% Similarity=0.151 Sum_probs=34.2
Q ss_pred ceEEEEEeCCcccccc--chhHHHHHHHhCCCeEEEeCCCCCccc---------cCCccEEEEccCc
Q 037279 9 RFRIGYALAPKKGQSL--IQPSLLTKASERGIDLIPIDPIKPLVE---------QGPFDCIVHKLYG 64 (327)
Q Consensus 9 ~~~vG~~~~~~k~~~~--~~~~l~~~~~~~gi~~~~ld~~~~l~~---------q~~~Dvilhk~~~ 64 (327)
+.+||+.++.....-+ ....+.++++++|+++...+....... ...+|.+|--..+
T Consensus 2 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~ 68 (313)
T 3m9w_A 2 EVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYN 68 (313)
T ss_dssp -CEEEEEESCCSSSTTHHHHHHHHHHHHHTSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 5689999987432211 123456788899999998877643221 1356777654433
No 88
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=27.54 E-value=86 Score=26.84 Aligned_cols=43 Identities=9% Similarity=0.160 Sum_probs=26.7
Q ss_pred cCCceEEEEEeCCcccccc--chhHHHHHHHhCCCeEEEeCCCCC
Q 037279 6 QCQRFRIGYALAPKKGQSL--IQPSLLTKASERGIDLIPIDPIKP 48 (327)
Q Consensus 6 ~~~~~~vG~~~~~~k~~~~--~~~~l~~~~~~~gi~~~~ld~~~~ 48 (327)
+++..+||++++.....-+ ....+.++++++|+++...+....
T Consensus 5 ~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~ 49 (293)
T 3l6u_A 5 SPKRNIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVATSQNS 49 (293)
T ss_dssp ----CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECSSC
T ss_pred CCCCcEEEEEEecCCcHHHHHHHHHHHHHHHHcCCEEEEECCCCC
Confidence 3567899999987532111 123456788899999998876643
No 89
>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A
Probab=27.37 E-value=1.5e+02 Score=27.61 Aligned_cols=72 Identities=14% Similarity=0.170 Sum_probs=47.1
Q ss_pred CceEEEEEeCCcc-ccccchhHHHHHHHhCCCeEEEeCCCCC-c------ccc-----CCccEEEEccCchhHHHHHHHH
Q 037279 8 QRFRIGYALAPKK-GQSLIQPSLLTKASERGIDLIPIDPIKP-L------VEQ-----GPFDCIVHKLYGPDWTRQLQQF 74 (327)
Q Consensus 8 ~~~~vG~~~~~~k-~~~~~~~~l~~~~~~~gi~~~~ld~~~~-l------~~q-----~~~Dvilhk~~~~~~~~~l~~~ 74 (327)
.+.+|+.+|.+.= +-+. +|-.++.+.|-+++.++++.. + .+- .=+|+|+-|...+.....+.+
T Consensus 40 ~gK~la~lF~epSTRTR~---SFE~A~~~LGg~vi~l~~~~ssl~kgEsl~DTarvLs~y~D~IviR~~~~~~~~~lA~- 115 (355)
T 4a8p_A 40 KNKSLGMIFQQSSTRTRV---SFETAMEQLGGHGEYLAPGQIQLGGHETIEDTSRVLSRLVDILMARVERHHSIVDLAN- 115 (355)
T ss_dssp TTCEEEEEESSCCSHHHH---HHHHHHHHTTCEEEEECBTTBCBTTTBCHHHHHHHHTTTCSEEEEECSSHHHHHHHHH-
T ss_pred CCCEEEEEecCCChhhHh---hHHHHHHHcCCeEEEeCcccccCCCCcCHHHHHHHHHHhCCEEEEecCcHHHHHHHHH-
Confidence 4678888886632 3222 355788999999999987632 1 110 126999999876554444444
Q ss_pred HHhCCCCcccCc
Q 037279 75 SSQNPNVPIIDS 86 (327)
Q Consensus 75 ~~~~p~v~Vid~ 86 (327)
+.++||||=
T Consensus 116 ---~~~vPVINa 124 (355)
T 4a8p_A 116 ---CATIPVING 124 (355)
T ss_dssp ---HCSSCEEEC
T ss_pred ---hCCCCEEeC
Confidence 458999993
No 90
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=27.28 E-value=85 Score=27.46 Aligned_cols=40 Identities=13% Similarity=0.086 Sum_probs=26.8
Q ss_pred CceEEEEEeCCcccccc--chhHHHHHHHhCCCeEEEeCCCC
Q 037279 8 QRFRIGYALAPKKGQSL--IQPSLLTKASERGIDLIPIDPIK 47 (327)
Q Consensus 8 ~~~~vG~~~~~~k~~~~--~~~~l~~~~~~~gi~~~~ld~~~ 47 (327)
+..+||+.++.....-+ ....+.++|+++|+++...+.+.
T Consensus 2 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~ 43 (330)
T 3uug_A 2 DKGSVGIAMPTKSSARWIDDGNNIVKQLQEAGYKTDLQYADD 43 (330)
T ss_dssp CCCEEEEEECCSSSTHHHHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred CCcEEEEEeCCCcchHHHHHHHHHHHHHHHcCCEEEEeeCCC
Confidence 46789999987542211 12235678899999988887543
No 91
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Probab=26.97 E-value=1.2e+02 Score=27.89 Aligned_cols=71 Identities=11% Similarity=0.257 Sum_probs=44.0
Q ss_pred CceEEEEEeCCcc-ccccchhHHHHHHHhCCCeEEEeCCCCC-------cccc-----CCccEEEEccCchhHHHHHHHH
Q 037279 8 QRFRIGYALAPKK-GQSLIQPSLLTKASERGIDLIPIDPIKP-------LVEQ-----GPFDCIVHKLYGPDWTRQLQQF 74 (327)
Q Consensus 8 ~~~~vG~~~~~~k-~~~~~~~~l~~~~~~~gi~~~~ld~~~~-------l~~q-----~~~Dvilhk~~~~~~~~~l~~~ 74 (327)
.+.+|+..|.+.= +-+. +|-.++.+.|-+++.++++.. +.+- .=+|+|+-|...+.....+.+|
T Consensus 47 ~gk~la~lF~e~STRTR~---SFE~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvLs~~~D~iviR~~~~~~~~~lA~~ 123 (323)
T 3gd5_A 47 HGKVLGLVFLKASTRTRV---SFTVAMYQLGGQVIDLSPSNTQVGRGEPVRDTARVLGRYVDGLAIRTFAQTELEEYAHY 123 (323)
T ss_dssp TTCEEEEEESSCCHHHHH---HHHHHHHHTTCEEEEC----------CCHHHHHHHHTTTCSEEEEECSSHHHHHHHHHH
T ss_pred CCCEEEEEecCCCcchHh---hHHHHHHHcCCeEEEeCcccccCCCCCCHHHHHHHHHHhCCEEEEecCChhHHHHHHHh
Confidence 4568888886642 2222 355788999999999987631 1110 1269999998766545555444
Q ss_pred HHhCCCCcccC
Q 037279 75 SSQNPNVPIID 85 (327)
Q Consensus 75 ~~~~p~v~Vid 85 (327)
.++||||
T Consensus 124 ----~~vPVIN 130 (323)
T 3gd5_A 124 ----AGIPVIN 130 (323)
T ss_dssp ----HCSCEEE
T ss_pred ----CCCCEEe
Confidence 4799998
No 92
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=26.38 E-value=76 Score=28.17 Aligned_cols=62 Identities=10% Similarity=-0.068 Sum_probs=44.8
Q ss_pred hhHHHHHHHhCCCeEEEeCCCCCcc---ccCCccEEEEc-cC----chhHHHHHHHHHHhCCCCcccCcH
Q 037279 26 QPSLLTKASERGIDLIPIDPIKPLV---EQGPFDCIVHK-LY----GPDWTRQLQQFSSQNPNVPIIDSP 87 (327)
Q Consensus 26 ~~~l~~~~~~~gi~~~~ld~~~~l~---~q~~~Dvilhk-~~----~~~~~~~l~~~~~~~p~v~Vid~~ 87 (327)
...|+++.++.|+++..+++..... +...||+||.- .. +....+.+.+|+++--++.++--.
T Consensus 19 a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L~~yDvIIl~d~~~~~l~~~~~~~L~~yV~~GGgLi~~gG~ 88 (259)
T 3rht_A 19 AGYLAGLMTSWQWEFDYIPSHVGLDVGELLAKQDLVILSDYPAERMTAQAIDQLVTMVKAGCGLVMLGGW 88 (259)
T ss_dssp HHHHHHHHHHTTCCCEEECTTSCBCSSHHHHTCSEEEEESCCGGGBCHHHHHHHHHHHHTTCEEEEECST
T ss_pred HHHHHHHHHhCCceEEEecccccccChhHHhcCCEEEEcCCccccCCHHHHHHHHHHHHhCCeEEEecCc
Confidence 4468889999999999999885432 23489999854 21 234578899999887778877443
No 93
>3k1t_A Glutamate--cysteine ligase GSHA; putative gamma-glutamylcysteine synthetase; HET: MSE; 1.90A {Methylobacillus flagellatus KT}
Probab=26.07 E-value=1.1e+02 Score=29.08 Aligned_cols=49 Identities=14% Similarity=0.285 Sum_probs=33.6
Q ss_pred cEeEEEEEEeCCCCCcEEEEEEcCCCC-CCCCC-ChHHHHHHHHHHHHhhcccC
Q 037279 273 NLFNFDVMRDARDSNRYLIIDVNYFPG-YAKMP-GYESIMTDFFLQVLNKSAVG 324 (327)
Q Consensus 273 ~l~G~Dvi~~~~~g~~~~VidVN~fPg-~~g~~-~~~~~l~~~~~~~~~~~~~~ 324 (327)
-+..||+--. |=.+.-||.|.||| |-++. ++-..-++++.+.+++.++.
T Consensus 44 fY~SVDlRna---GfKlAPVDtNLFPaGFNNL~~~~~plavqa~~~aiek~cp~ 94 (432)
T 3k1t_A 44 FYASVDLRNA---GFKLAPVDTNLFPGGFNNLNPDFLPLCIQAAMVAVEKICPD 94 (432)
T ss_dssp SEEEEEEEEC---SSCEEEEEEESSCCCGGGSCGGGHHHHHHHHHHHHHHHSTT
T ss_pred ceEEEEeccc---CCccccccccCCCcccccCCHHHHHHHHHHHHHHHHHhCcc
Confidence 3556998754 33588999999997 76664 45556666666777766653
No 94
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=25.12 E-value=57 Score=31.80 Aligned_cols=24 Identities=13% Similarity=0.427 Sum_probs=20.1
Q ss_pred CCcEeEEEEEEeCCCCCcEEEEEEcC
Q 037279 271 GLNLFNFDVMRDARDSNRYLIIDVNY 296 (327)
Q Consensus 271 Gl~l~G~Dvi~~~~~g~~~~VidVN~ 296 (327)
=+.++|+|++.+. +|+ ++|+|-|.
T Consensus 141 ~~~i~~~Dl~r~~-dG~-~~vlEdn~ 164 (474)
T 3n6x_A 141 YAHIAGVDLVRTG-END-FYVLEDNL 164 (474)
T ss_dssp SCSEEEEEEEECS-SSC-EEEEEEEC
T ss_pred EEEEEEEEEEECC-CCC-EEEEEeCC
Confidence 3789999999986 464 99999996
No 95
>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*
Probab=24.62 E-value=1.5e+02 Score=27.42 Aligned_cols=71 Identities=17% Similarity=0.306 Sum_probs=47.8
Q ss_pred CceEEEEEeCCc-cccccchhHHHHHHHhCCCeEEEeCCCCC-c------ccc-----CCccEEEEccCchhHHHHHHHH
Q 037279 8 QRFRIGYALAPK-KGQSLIQPSLLTKASERGIDLIPIDPIKP-L------VEQ-----GPFDCIVHKLYGPDWTRQLQQF 74 (327)
Q Consensus 8 ~~~~vG~~~~~~-k~~~~~~~~l~~~~~~~gi~~~~ld~~~~-l------~~q-----~~~Dvilhk~~~~~~~~~l~~~ 74 (327)
+..+|+..|-+. =+-+. +|-.++.+.|-.++.+++... + .+- .=+|+|+-|...+.....+.+|
T Consensus 43 ~gk~la~lF~e~STRTR~---SFE~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvLs~~~D~IviR~~~~~~~~~lA~~ 119 (333)
T 1duv_G 43 TGKNIALIFEKDSTRTRC---SFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGYGQEIVETLAEY 119 (333)
T ss_dssp TTCEEEEEESSCCSHHHH---HHHHHHHHTTCEEEEECSSSSCBTTTBCHHHHHHHHTTTCSEEEEECSCHHHHHHHHHH
T ss_pred CCCEEEEEecCCCccHHH---HHHHHHHHcCCeEEEECCccccCcCCCcHHHHHHHHHHhCCEEEEEcCCchHHHHHHHh
Confidence 467888888653 22222 355788999999999997742 1 110 1269999998776555555555
Q ss_pred HHhCCCCcccC
Q 037279 75 SSQNPNVPIID 85 (327)
Q Consensus 75 ~~~~p~v~Vid 85 (327)
.++||||
T Consensus 120 ----~~vPVIN 126 (333)
T 1duv_G 120 ----ASVPVWN 126 (333)
T ss_dssp ----HSSCEEE
T ss_pred ----CCCCeEc
Confidence 3799999
No 96
>3n5b_B ASR0485 protein; PII, PIPX, transcription regulator, signal transducer; HET: ADP; 1.90A {Nostoc}
Probab=24.24 E-value=19 Score=27.75 Aligned_cols=25 Identities=16% Similarity=0.509 Sum_probs=18.9
Q ss_pred CceEEEeccCCC--CeEEEEEEECCEE
Q 037279 171 APFVLQEFVNHG--GFIFKVYVAGMNV 195 (327)
Q Consensus 171 ~p~vvQefI~h~--g~d~KV~ViG~~v 195 (327)
.|+--+.|+||+ |-+|+|..+|+.-
T Consensus 22 ~~ms~E~YLNHPTFGLLyrVc~~~e~q 48 (112)
T 3n5b_B 22 NPENSETYINHPTWGLLYRICMVDESQ 48 (112)
T ss_dssp ----CCCEEEETTTEEEEEEEEEETTE
T ss_pred CCcchhhhccCCccchheeeeecCCcc
Confidence 467778899999 8999999999865
No 97
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}
Probab=23.37 E-value=1.6e+02 Score=27.29 Aligned_cols=71 Identities=13% Similarity=0.183 Sum_probs=45.9
Q ss_pred CceEEEEEeCCcc-ccccchhHHHHHHHhCCCeEEEeCCCCC-------cccc-----CCccEEEEccCchhHHHHHHHH
Q 037279 8 QRFRIGYALAPKK-GQSLIQPSLLTKASERGIDLIPIDPIKP-------LVEQ-----GPFDCIVHKLYGPDWTRQLQQF 74 (327)
Q Consensus 8 ~~~~vG~~~~~~k-~~~~~~~~l~~~~~~~gi~~~~ld~~~~-------l~~q-----~~~Dvilhk~~~~~~~~~l~~~ 74 (327)
...+|+..|.+.= +-+. +|-.++.+.|-.++.+++... +.+- .=+|+|+-|...+.....+.+
T Consensus 69 ~gK~la~lF~epSTRTR~---SFE~A~~~LGg~vi~l~~~~ss~~kgEsl~DTarvLs~y~D~IviR~~~~~~~~~lA~- 144 (340)
T 4ep1_A 69 QGKILGLIFDKHSTRTRV---SFEAGMVQLGGHGMFLNGKEMQMGRGETVSDTAKVLSHYIDGIMIRTFSHADVEELAK- 144 (340)
T ss_dssp TTCEEEEEESSCCHHHHH---HHHHHHHHTTCEEEEEESCC------CCTTHHHHHHHHHCSEEEEECSCHHHHHHHHH-
T ss_pred CCceEEEEecCCCccHHH---HHHHHHHHcCCeEEEcCcccccCCCCCCHHHHHHHHHHhCCEEEEecCChhHHHHHHH-
Confidence 4578888886532 2222 355788999999999987631 2110 016999999876654444444
Q ss_pred HHhCCCCcccC
Q 037279 75 SSQNPNVPIID 85 (327)
Q Consensus 75 ~~~~p~v~Vid 85 (327)
+.++||||
T Consensus 145 ---~~~vPVIN 152 (340)
T 4ep1_A 145 ---ESSIPVIN 152 (340)
T ss_dssp ---HCSSCEEE
T ss_pred ---hCCCCEEe
Confidence 45799999
No 98
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=23.30 E-value=1.1e+02 Score=26.18 Aligned_cols=38 Identities=11% Similarity=0.143 Sum_probs=25.9
Q ss_pred ceEEEEEeCCccccc--cchhHHHHHHHhCCCeEEEeCCC
Q 037279 9 RFRIGYALAPKKGQS--LIQPSLLTKASERGIDLIPIDPI 46 (327)
Q Consensus 9 ~~~vG~~~~~~k~~~--~~~~~l~~~~~~~gi~~~~ld~~ 46 (327)
.++||+.++.....- -....+.++++++|+++...+..
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~ 41 (306)
T 8abp_A 2 NLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVP 41 (306)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHHHHHHTEEEEEEECC
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCCC
Confidence 589999998653211 11233567888899999888764
No 99
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Probab=23.13 E-value=1.7e+02 Score=26.65 Aligned_cols=87 Identities=14% Similarity=0.241 Sum_probs=53.8
Q ss_pred CceEEEEEeCCcc-ccccchhHHHHHHHhCCCeEEEeCCCCC-cc------cc----C--CccEEEEccCchhHHHHHHH
Q 037279 8 QRFRIGYALAPKK-GQSLIQPSLLTKASERGIDLIPIDPIKP-LV------EQ----G--PFDCIVHKLYGPDWTRQLQQ 73 (327)
Q Consensus 8 ~~~~vG~~~~~~k-~~~~~~~~l~~~~~~~gi~~~~ld~~~~-l~------~q----~--~~Dvilhk~~~~~~~~~l~~ 73 (327)
...+|+..|.+.= +-+. +|-.++.+.|-+.+.++++.. +. +- . .+|+|+-|...+.....+.+
T Consensus 35 ~gk~la~lF~e~STRTR~---SFE~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvLs~~~~D~iviR~~~~~~~~~la~ 111 (304)
T 3r7f_A 35 TGKFAANLFFEPSTRTRF---SFEVAEKKLGMNVLNLDGTSTSVQKGETLYDTIRTLESIGVDVCVIRHSEDEYYEELVS 111 (304)
T ss_dssp TTCEEEEEESSCCSHHHH---HHHHHHHHTTCEEEEEETTSTTSCSSSCHHHHHHHHHHHTCCEEEEECSSTTCHHHHHH
T ss_pred CCCEEEEEecCCChhHHH---hHHHHHHHCCCeEEEECcccccCCCCCCHHHHHHHHHHhcCCEEEEecCChhHHHHHHH
Confidence 4677888876542 2222 356788999999999987642 11 10 1 36999999876654544444
Q ss_pred HHHhCCCCcccCcHH-----HHHHhcCHHHHHH
Q 037279 74 FSSQNPNVPIIDSPD-----SIERLHNRISMLE 101 (327)
Q Consensus 74 ~~~~~p~v~Vid~~~-----ai~~~~dR~~~~~ 101 (327)
+.++||||=.+ -.+.+.|=+.+.+
T Consensus 112 ----~~~vPVINagdg~~~HPtQaLaDl~Ti~e 140 (304)
T 3r7f_A 112 ----QVNIPILNAGDGCGQHPTQSLLDLMTIYE 140 (304)
T ss_dssp ----HCSSCEEESCCTTSCCHHHHHHHHHHHHH
T ss_pred ----hCCCCEEeCCCCCCcCcHHHHHHHHHHHH
Confidence 46799998432 3455555433333
No 100
>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1
Probab=22.86 E-value=1.8e+02 Score=26.66 Aligned_cols=71 Identities=18% Similarity=0.320 Sum_probs=47.7
Q ss_pred CceEEEEEeCCcc-ccccchhHHHHHHHhCCCeEEEeCCCCC-------cccc-----CCccEEEEccCchhHHHHHHHH
Q 037279 8 QRFRIGYALAPKK-GQSLIQPSLLTKASERGIDLIPIDPIKP-------LVEQ-----GPFDCIVHKLYGPDWTRQLQQF 74 (327)
Q Consensus 8 ~~~~vG~~~~~~k-~~~~~~~~l~~~~~~~gi~~~~ld~~~~-------l~~q-----~~~Dvilhk~~~~~~~~~l~~~ 74 (327)
+..+|+.+|-+.= +-+. +|-.++.+.|-.++.++.... +.+- .=+|+|+-|...+.....+.++
T Consensus 57 ~gk~la~lF~epSTRTR~---SFE~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvLs~~~D~iviR~~~~~~~~~lA~~ 133 (325)
T 1vlv_A 57 KGMTLAMIFEKRSTRTRL---AFETAFAEEGGHPIFLSPNDIHLGAKESLEDTARVLGRMVDAIMFRGYKQETVEKLAEY 133 (325)
T ss_dssp TTCEEEEEESSCCHHHHH---HHHHHHHHTTCEEEEECTTTCCTTTSSCHHHHHHHHHTTCSEEEEESSCHHHHHHHHHH
T ss_pred CCCEEEEEeccCCcchHH---HHHHHHHHcCCeEEEECCccccCCCCcCHHHHHHHHHHhCCEEEEECCChHHHHHHHHh
Confidence 4678888886532 2222 355788999999999997642 1110 1269999998776555555555
Q ss_pred HHhCCCCcccC
Q 037279 75 SSQNPNVPIID 85 (327)
Q Consensus 75 ~~~~p~v~Vid 85 (327)
.++||||
T Consensus 134 ----~~vPVIN 140 (325)
T 1vlv_A 134 ----SGVPVYN 140 (325)
T ss_dssp ----HCSCEEE
T ss_pred ----CCCCEEe
Confidence 3799999
No 101
>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A
Probab=22.82 E-value=1.6e+02 Score=27.08 Aligned_cols=71 Identities=18% Similarity=0.351 Sum_probs=47.1
Q ss_pred CceEEEEEeCCcc-ccccchhHHHHHHHhCCCeEEEeCCCCCccccC------------CccEEEEccCchhHHHHHHHH
Q 037279 8 QRFRIGYALAPKK-GQSLIQPSLLTKASERGIDLIPIDPIKPLVEQG------------PFDCIVHKLYGPDWTRQLQQF 74 (327)
Q Consensus 8 ~~~~vG~~~~~~k-~~~~~~~~l~~~~~~~gi~~~~ld~~~~l~~q~------------~~Dvilhk~~~~~~~~~l~~~ 74 (327)
...+|+..|-+.= +-+. +|-.++.+.|-.++.+++...-...| =+|+|+-|...+.....+.+|
T Consensus 44 ~gk~la~lF~e~STRTR~---SFE~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvLs~~~D~IviR~~~~~~~~~lA~~ 120 (335)
T 1dxh_A 44 KRKNIALIFEKTSTRTRC---AFEVAAYDQGANVTYIDPNSSQIGHKESMKDTARVLGRMYDAIEYRGFKQEIVEELAKF 120 (335)
T ss_dssp TTCEEEEEESSCCHHHHH---HHHHHHHHTTCEEEEECTTTCCBTTTBCHHHHHHHHHHHCSEEEEECSCHHHHHHHHHH
T ss_pred CCCEEEEEecCCCcchHH---HHHHHHHHcCCeEEEECCccccCcCCCcHHHHHHHHHhhCCEEEEecCChhHHHHHHHh
Confidence 4678888886532 2222 35578899999999999774211111 169999998766544444444
Q ss_pred HHhCCCCcccC
Q 037279 75 SSQNPNVPIID 85 (327)
Q Consensus 75 ~~~~p~v~Vid 85 (327)
.++||||
T Consensus 121 ----s~vPVIN 127 (335)
T 1dxh_A 121 ----AGVPVFN 127 (335)
T ss_dssp ----SSSCEEE
T ss_pred ----CCCCEEc
Confidence 5799999
No 102
>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}
Probab=22.54 E-value=1.8e+02 Score=26.37 Aligned_cols=71 Identities=10% Similarity=0.177 Sum_probs=45.9
Q ss_pred CceEEEEEeCCcc-ccccchhHHHHHHHhCCCeEEEeCCCCCccccC------------CccEEEEccCchhHHHHHHHH
Q 037279 8 QRFRIGYALAPKK-GQSLIQPSLLTKASERGIDLIPIDPIKPLVEQG------------PFDCIVHKLYGPDWTRQLQQF 74 (327)
Q Consensus 8 ~~~~vG~~~~~~k-~~~~~~~~l~~~~~~~gi~~~~ld~~~~l~~q~------------~~Dvilhk~~~~~~~~~l~~~ 74 (327)
...+|+..|.+.= +-+. +|-.++.+.|-+++.+++...-...| =+|+|+-|...+.....+.+
T Consensus 35 ~gk~la~lF~e~STRTR~---SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~~~~~~~lA~- 110 (307)
T 3tpf_A 35 QDKTLAMIFEKNSTRTRM---AFELAITELGGKALFLSSNDLQLSRGEPVKDTARVIGAMVDFVMMRVNKHETLLEFAR- 110 (307)
T ss_dssp TTCEEEEEESSCCHHHHH---HHHHHHHHTTCEEEEECTTTCCTTTSSCHHHHHHHHHHHSSEEEEECSCHHHHHHHHH-
T ss_pred CCCEEEEEecCCCcchHH---hHHHHHHHcCCeEEEcCcccccCCCCCCHHHHHHHHHHhCCEEEEecCChHHHHHHHH-
Confidence 4567888876532 2222 35578899999999999764211111 16999999876644444433
Q ss_pred HHhCCCCcccC
Q 037279 75 SSQNPNVPIID 85 (327)
Q Consensus 75 ~~~~p~v~Vid 85 (327)
+.++||||
T Consensus 111 ---~~~vPVIN 118 (307)
T 3tpf_A 111 ---YSKAPVIN 118 (307)
T ss_dssp ---HCSSCEEE
T ss_pred ---hCCCCEEe
Confidence 45799998
No 103
>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}
Probab=22.09 E-value=1.8e+02 Score=27.12 Aligned_cols=71 Identities=13% Similarity=0.099 Sum_probs=47.2
Q ss_pred CceEEEEEeCCcc-ccccchhHHHHHHHhCCCeEEEeCCCCCccccC------------CccEEEEccCchhHHHHHHHH
Q 037279 8 QRFRIGYALAPKK-GQSLIQPSLLTKASERGIDLIPIDPIKPLVEQG------------PFDCIVHKLYGPDWTRQLQQF 74 (327)
Q Consensus 8 ~~~~vG~~~~~~k-~~~~~~~~l~~~~~~~gi~~~~ld~~~~l~~q~------------~~Dvilhk~~~~~~~~~l~~~ 74 (327)
...+|+.+|-+.= +-+. +|-.++.+.|-.++.++....-...| =+|+|+-|...+.....+.+|
T Consensus 66 ~Gk~la~lF~e~STRTR~---SFE~A~~~LGg~vi~l~~~~ss~~kgEsl~DTarvLs~~~D~IviR~~~~~~~~~lA~~ 142 (359)
T 2w37_A 66 EGKNIALLFEKSSTRTRS---AFTTASIDLGAHPEYLGQNDIQLGKKESTSDTAKVLGSMFDGIEFRGFKQSDAEILARD 142 (359)
T ss_dssp TTCEEEEEESSCCHHHHH---HHHHHHHHTTCEEEEECTTTCCTTTSSCHHHHHHHHHHHCSEEEEESSCHHHHHHHHHH
T ss_pred CCCEEEEEecCCCccHHH---HHHHHHHHcCCeEEEeCCccccCCCCcCHHHHHHHHHHhcCEEEEecCChHHHHHHHHh
Confidence 4678888886532 2222 35578899999999999774211111 169999998766545444444
Q ss_pred HHhCCCCcccC
Q 037279 75 SSQNPNVPIID 85 (327)
Q Consensus 75 ~~~~p~v~Vid 85 (327)
.++||||
T Consensus 143 ----s~vPVIN 149 (359)
T 2w37_A 143 ----SGVPVWN 149 (359)
T ss_dssp ----SSSCEEE
T ss_pred ----CCCCEEc
Confidence 5799999
No 104
>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A
Probab=21.05 E-value=1.8e+02 Score=26.60 Aligned_cols=71 Identities=13% Similarity=0.225 Sum_probs=46.5
Q ss_pred CceEEEEEeCCc-cccccchhHHHHHHHhCCCeEEEeCCCCC-------cccc-----CCccEEEEccCchhHHHHHHHH
Q 037279 8 QRFRIGYALAPK-KGQSLIQPSLLTKASERGIDLIPIDPIKP-------LVEQ-----GPFDCIVHKLYGPDWTRQLQQF 74 (327)
Q Consensus 8 ~~~~vG~~~~~~-k~~~~~~~~l~~~~~~~gi~~~~ld~~~~-------l~~q-----~~~Dvilhk~~~~~~~~~l~~~ 74 (327)
...+|+.+|.+. =+-+. +|-.++.+.|-+++.++.... +.+- .=+|+|+-|...+.....+.+
T Consensus 45 ~gk~la~lF~e~STRTR~---SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~~~~~~~lA~- 120 (315)
T 1pvv_A 45 EGKTLAMIFQKPSTRTRV---SFEVAMAHLGGHALYLNAQDLQLRRGETIADTARVLSRYVDAIMARVYDHKDVEDLAK- 120 (315)
T ss_dssp TTCEEEEEESSCCSHHHH---HHHHHHHHTTSEEEEEEGGGSTTTTTCCHHHHHHHHTTTCSEEEEECSSHHHHHHHHH-
T ss_pred CCCEEEEEecCCCcchHH---HHHHHHHHcCCeEEEECCccccCCCCcCHHHHHHHHHHhCcEEEEecCchHHHHHHHH-
Confidence 467888888653 22222 355788999999999986631 1110 125999999876654444444
Q ss_pred HHhCCCCcccC
Q 037279 75 SSQNPNVPIID 85 (327)
Q Consensus 75 ~~~~p~v~Vid 85 (327)
+.++||||
T Consensus 121 ---~~~vPVIN 128 (315)
T 1pvv_A 121 ---YATVPVIN 128 (315)
T ss_dssp ---HCSSCEEE
T ss_pred ---hCCCCEEc
Confidence 45799999
No 105
>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A
Probab=20.81 E-value=1.7e+02 Score=26.65 Aligned_cols=71 Identities=14% Similarity=0.224 Sum_probs=46.4
Q ss_pred CceEEEEEeCCc-cccccchhHHHHHHHhCCCeEEEeCCCCCccccC------------CccEEEEccCchhHHHHHHHH
Q 037279 8 QRFRIGYALAPK-KGQSLIQPSLLTKASERGIDLIPIDPIKPLVEQG------------PFDCIVHKLYGPDWTRQLQQF 74 (327)
Q Consensus 8 ~~~~vG~~~~~~-k~~~~~~~~l~~~~~~~gi~~~~ld~~~~l~~q~------------~~Dvilhk~~~~~~~~~l~~~ 74 (327)
...+|+.+|-+. =+-+. +|-.++.+.|-+++.++....-...| =+|+|+-|...+.....+.+
T Consensus 38 ~gk~l~~lF~e~STRTR~---SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~~~~~~~lA~- 113 (307)
T 2i6u_A 38 GPRGVAVIFDKNSTRTRF---SFELGIAQLGGHAVVVDSGSTQLGRDETLQDTAKVLSRYVDAIVWRTFGQERLDAMAS- 113 (307)
T ss_dssp TTCEEEEEESSCCSHHHH---HHHHHHHHTTCEEEEEEGGGSGGGGTCCHHHHHHHHHHHEEEEEEECSSHHHHHHHHH-
T ss_pred CCCEEEEEecCCCcchHH---HHHHHHHHcCCeEEEECCccccCCCCCCHHHHHHHHHHhCCEEEEecCChhHHHHHHh-
Confidence 467888888653 22222 35578899999999998763211111 15999999876654444444
Q ss_pred HHhCCCCcccC
Q 037279 75 SSQNPNVPIID 85 (327)
Q Consensus 75 ~~~~p~v~Vid 85 (327)
+.++||||
T Consensus 114 ---~~~vPVIN 121 (307)
T 2i6u_A 114 ---VATVPVIN 121 (307)
T ss_dssp ---HCSSCEEE
T ss_pred ---hCCCCEEc
Confidence 45799999
No 106
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=20.07 E-value=1.5e+02 Score=27.20 Aligned_cols=77 Identities=6% Similarity=0.121 Sum_probs=44.8
Q ss_pred cCCceEEEEEeCCcc-ccccc---hhHHHHHHHhCC--CeEEEeCCCCCccc---------cCCccEEEEccCchhHHHH
Q 037279 6 QCQRFRIGYALAPKK-GQSLI---QPSLLTKASERG--IDLIPIDPIKPLVE---------QGPFDCIVHKLYGPDWTRQ 70 (327)
Q Consensus 6 ~~~~~~vG~~~~~~k-~~~~~---~~~l~~~~~~~g--i~~~~ld~~~~l~~---------q~~~Dvilhk~~~~~~~~~ 70 (327)
..+.++||+.++... ...|. ++.+.+++++.| +++..++....-.+ +..+|+|+-= +..+...
T Consensus 23 ~~~~~kIglv~~g~i~D~~f~~~~~~G~~~~~~~~G~~~~~~~~e~~~~~~d~~~~l~~l~~~g~d~Ii~~--g~~~~~~ 100 (356)
T 3s99_A 23 AEEKLKVGFIYIGPPGDFGWTYQHDQARKELVEALGDKVETTFLENVAEGADAERSIKRIARAGNKLIFTT--SFGYMDP 100 (356)
T ss_dssp ---CEEEEEECSSCGGGSSHHHHHHHHHHHHHHHHTTTEEEEEECSCCTTHHHHHHHHHHHHTTCSEEEEC--SGGGHHH
T ss_pred cCCCCEEEEEEccCCCchhHHHHHHHHHHHHHHHhCCceEEEEEecCCCHHHHHHHHHHHHHCCCCEEEEC--CHHHHHH
Confidence 356799999996432 23443 233566778889 88888775432111 1357877743 3233455
Q ss_pred HHHHHHhCCCCccc
Q 037279 71 LQQFSSQNPNVPII 84 (327)
Q Consensus 71 l~~~~~~~p~v~Vi 84 (327)
+.+..+++|+++++
T Consensus 101 ~~~vA~~~Pdv~fv 114 (356)
T 3s99_A 101 TVKVAKKFPDVKFE 114 (356)
T ss_dssp HHHHHTTCTTSEEE
T ss_pred HHHHHHHCCCCEEE
Confidence 66767788875544
Done!