RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 037279
(327 letters)
>gnl|CDD|215508 PLN02941, PLN02941, inositol-tetrakisphosphate 1-kinase.
Length = 328
Score = 477 bits (1229), Expect = e-171
Identities = 169/324 (52%), Positives = 225/324 (69%), Gaps = 14/324 (4%)
Query: 1 MSTQSQCQRFRIGYALAPKKGQSLIQPSLLTKASERGIDLIPIDPIKPLVEQGPFDCIVH 60
+S+ SQ +RF +GYAL PKK +S +QPSL A +GIDL+ IDP +PL EQGPFD I+H
Sbjct: 13 LSSSSQQKRFVVGYALTPKKVKSFLQPSLEALARSKGIDLVAIDPSRPLSEQGPFDVILH 72
Query: 61 KLYGPDWTRQLQQFSSQNPNVPIIDSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQ 120
KLYG +W +QL+++ ++P+V ++D PD+I+RLHNR SML+VV LKL GVP Q
Sbjct: 73 KLYGKEWRQQLEEYREKHPDVTVLDPPDAIQRLHNRQSMLQVVADLKLSDGYGSVGVPKQ 132
Query: 121 VVVSEMKSLTSIEDLK----LTFPVIAKPLVADGSVKSHQMYLIFDSQGLESMTAPFVLQ 176
+VV +SI D L FP++AKPLVADGS KSH+M L +D +GL + P VLQ
Sbjct: 133 LVV--YDDESSIPDAVALAGLKFPLVAKPLVADGSAKSHKMSLAYDQEGLSKLEPPLVLQ 190
Query: 177 EFVNHGGFIFKVYVAGMNVKCVKRKSLPDISEEKLKSLKGFLPFSRISNLIDNDKKVHDD 236
EFVNHGG +FKVYV G VKCV+R SLPD+SEE+L S +G LPF R+SN +
Sbjct: 191 EFVNHGGVLFKVYVVGDYVKCVRRFSLPDVSEEELSSAEGVLPFPRVSNAAAS------- 243
Query: 237 GKKNSQGDEVDLESVEMPSQSFLCELARGMREALGLNLFNFDVMRDARDSNRYLIIDVNY 296
++ +D E E+P + FL +LAR +R LGL LFNFD++R+ +RY +ID+NY
Sbjct: 244 -ADDADNGGLDPEVAELPPRPFLEDLARELRRRLGLRLFNFDMIREHGTGDRYYVIDINY 302
Query: 297 FPGYAKMPGYESIMTDFFLQVLNK 320
FPGYAKMPGYE+++TDF L ++ K
Sbjct: 303 FPGYAKMPGYETVLTDFLLSLVQK 326
>gnl|CDD|114493 pfam05770, Ins134_P3_kin, Inositol 1, 3, 4-trisphosphate
5/6-kinase. This family consists of several inositol 1,
3, 4-trisphosphate 5/6-kinase proteins. Inositol
1,3,4-trisphosphate is at a branch point in inositol
phosphate metabolism. It is dephosphorylated by specific
phosphatases to either inositol 3,4-bisphosphate or
inositol 1,3-bisphosphate. Alternatively, it is
phosphorylated to inositol 1,3,4,6-tetrakisphosphate or
inositol 1,3,4,5-tetrakisphosphate by inositol
trisphosphate 5/6-kinase.
Length = 307
Score = 393 bits (1011), Expect = e-138
Identities = 167/317 (52%), Positives = 215/317 (67%), Gaps = 17/317 (5%)
Query: 4 QSQCQRFRIGYALAPKKGQSLIQPSLLTKASERGIDLIPIDPIKPLVEQGPFDCIVHKLY 63
+ +R+ +GYALA KK +S IQPSL A +RGIDL+ +DP +PL EQGPFD I+HKL
Sbjct: 2 DTFLKRYLVGYALAEKKIKSFIQPSLAELARKRGIDLVQLDPSRPLSEQGPFDIIIHKLT 61
Query: 64 GPDWTRQLQQFSSQNPNVPIIDSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVV 123
+W +L++F +P VP++D P +I RLHNR SML+VV L L ++ +FGVP QVVV
Sbjct: 62 DKEWRHRLEEFREAHPEVPVLDPPPAIRRLHNRQSMLQVVADLNLSMEDGRFGVPPQVVV 121
Query: 124 SEMKSLTS--IEDLKLTFPVIAKPLVADGSVKSHQMYLIFDSQGLESMTAPFVLQEFVNH 181
+ S S LTFP+IAKPLVADG+ KSH+M L++D +GL + P VLQEFVNH
Sbjct: 122 MKDASSLSRAGAKAGLTFPLIAKPLVADGTAKSHEMSLVYDQEGLNKLQPPLVLQEFVNH 181
Query: 182 GGFIFKVYVAGMNVKCVKRKSLPDISEEKLKSLKGFLPFSRISNLIDNDKKVHDDGKKNS 241
GG +FKVYV G +V VKR+SLPD+S L G FS++SNL S
Sbjct: 182 GGVLFKVYVVGEHVTVVKRRSLPDVSAGTLDRSSGSFRFSQVSNL------------TAS 229
Query: 242 QGD-EVD--LESVEMPSQSFLCELARGMREALGLNLFNFDVMRDARDSNRYLIIDVNYFP 298
D E+D LE EMP FL +LAR +R ALGL LFNFD++RDA ++RYL+ID+NYFP
Sbjct: 230 ADDAELDKILEIAEMPPDPFLEDLARALRRALGLRLFNFDIIRDAGTADRYLVIDINYFP 289
Query: 299 GYAKMPGYESIMTDFFL 315
GYAKMP YE+++TDFF
Sbjct: 290 GYAKMPEYETVLTDFFW 306
>gnl|CDD|223267 COG0189, RimK, Glutathione synthase/Ribosomal protein S6
modification enzyme (glutaminyl transferase) [Coenzyme
metabolism / Translation, ribosomal structure and
biogenesis].
Length = 318
Score = 43.9 bits (104), Expect = 6e-05
Identities = 50/232 (21%), Positives = 79/232 (34%), Gaps = 57/232 (24%)
Query: 80 NVPIIDSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTF 139
VP+I+ P SI R N++ TQL VP ++ + L F
Sbjct: 104 GVPVINDPQSIRRCRNKL----YTTQL---LAKAGIPVPPTLITRDPDEAAEFVAEHLGF 156
Query: 140 PVIAKPLVADGS-------VKSHQMYLIFDSQGLESMT----APFVLQEFVNHGGFIFKV 188
PV+ KPL DGS V+ L LE++T ++QE++ +
Sbjct: 157 PVVLKPL--DGSGGRGVFLVEDADPEL---LSLLETLTQEGRKLIIVQEYIPKAKRDDRR 211
Query: 189 YVAGMNVKCVKRKSLPDISEEKLKSLKGFLPFSRISNLIDNDKKVHDDGKKN-SQGDEVD 247
+ G + +RI D + N ++G +
Sbjct: 212 VLVGGGE------------------VVAIYALARIPA--------SGDFRSNLARGGRAE 245
Query: 248 LESVEMPSQSFLCELARGMREALGLNLFNFDVMRDARDSNRYLIIDVNYFPG 299
E+ + ELA ALGL L D+ D + + +VN P
Sbjct: 246 P--CELTEE--EEELAVKAAPALGLGLVGVDI---IEDKDGLYVTEVNVSPT 290
>gnl|CDD|226433 COG3919, COG3919, Predicted ATP-grasp enzyme [General function
prediction only].
Length = 415
Score = 33.8 bits (77), Expect = 0.10
Identities = 45/204 (22%), Positives = 65/204 (31%), Gaps = 54/204 (26%)
Query: 113 EKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKPLVADGSVKSHQMYLIFDSQGLESMTAP 172
E+ G+P + S +LTFPVI KP + GSV F + E M
Sbjct: 123 EELGLPYPKTY-LVNSEIDTLVDELTFPVILKPGMG-GSVHFEARAKAFTAADNEEMKLA 180
Query: 173 F------------VLQEFVNHGGFIFKVYVAGMNVKCVKRKSLPDISEEKLKSLKGFLPF 220
V+QEF+ GG Y A
Sbjct: 181 LHRAYEEIGPDNVVVQEFIPGGGENQFSYAA----------------------------- 211
Query: 221 SRISNLIDNDKKVHDDGKKNSQGDEVDL----ESVEMPSQSFLCELARGMREALGLN-LF 275
L D V + + + VD VE+ + + AR E++ L
Sbjct: 212 -----LWDKGHPVAEFTARRLRQYPVDFGYTSTVVEVVDNQQVIQAARDFLESIEHTGLV 266
Query: 276 NFDVMRDARDSNRYLIIDVNYFPG 299
+ D RD + Y ++DVN P
Sbjct: 267 EVEFKYDPRDGS-YKLLDVNPRPW 289
>gnl|CDD|131199 TIGR02144, LysX_arch, Lysine biosynthesis enzyme LysX. The family
of proteins found in this equivalog include the
characterized LysX from Thermus thermophilus which is
part of a well-organized lysine biosynthesis gene
cluster. LysX is believed to carry out an ATP-dependent
acylation of the amino group of alpha-aminoadipate in
the prokaryotic version of the fungal AAA lysine
biosynthesis pathway. No species having a sequence in
this equivalog contains the elements of the more common
diaminopimelate lysine biosythesis pathway, and none has
been shown to be a lysine auxotroph. These sequences
have mainly recieved the name of the related enzyme,
"ribosomal protein S6 modification protein RimK". RimK
has been characterized in E. coli, and acts by
ATP-dependent condensation of S6 with glutamate
residues.
Length = 280
Score = 33.1 bits (76), Expect = 0.16
Identities = 38/126 (30%), Positives = 53/126 (42%), Gaps = 28/126 (22%)
Query: 81 VPIIDSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVP---NQVVVSEMKSLTSIEDLKL 137
VP+I+S IE ++I T LKL K GVP + +L E L
Sbjct: 73 VPVINSSHVIEACGDKI-----FTYLKL----AKAGVPTPRTYLAFDREAALKLAE--AL 121
Query: 138 TFPVIAKPLVADGSVKSHQMYLIFDSQGLES-------MTAP----FVLQEFVNHGGFIF 186
+PV+ KP GS + LI D LES + F +QE++N G
Sbjct: 122 GYPVVLKP--VIGSW-GRLVALIRDKDELESLLEHKEVLGGSQHKLFYIQEYINKPGRDI 178
Query: 187 KVYVAG 192
+V+V G
Sbjct: 179 RVFVIG 184
>gnl|CDD|222206 pfam13535, ATP-grasp_4, ATP-grasp domain. This family includes a
diverse set of enzymes that possess ATP-dependent
carboxylate-amine ligase activity.
Length = 183
Score = 31.9 bits (73), Expect = 0.24
Identities = 39/190 (20%), Positives = 72/190 (37%), Gaps = 52/190 (27%)
Query: 128 SLTSIEDL-----KLTFPVIAKPLVADGSVKSHQMYLIFDSQGLESM----------TAP 172
+ EDL ++ FPV+ KP GS+ + + + LE+ T
Sbjct: 24 LVDDEEDLDAAAEEIGFPVVLKPRDGAGSLGV---FRVDSAAELEAALAALAAEVEDTRE 80
Query: 173 FVLQEFVNHGGFIFKVYVAGMNVKCVKRKSLPDISEEKLKSLKGFLPFSRISNLIDNDKK 232
++++E++ G + +V + G L F +S +
Sbjct: 81 YLVEEYI--DGDEY-------HVDGL--------------VDDGELVFLGVS------RY 111
Query: 233 VHDDGKKNSQGDEVDLESV-EMPSQSFLCELARGMREALGLN--LFNFDVMRDARDSNRY 289
+ S+G E+ S E P L ELA + +ALGL +F+ + R
Sbjct: 112 LGPPPPDFSEGVELGSVSPGEDPLPEALRELAERVLKALGLRNGVFHLEFFLTPDG--RP 169
Query: 290 LIIDVNYFPG 299
+++++N PG
Sbjct: 170 VLLEINPRPG 179
>gnl|CDD|220726 pfam10384, Scm3, Centromere protein Scm3. Scm3 is a centromere
protein that has been shown in Saccharomyces cerevisiae
to be required for G2/M progression and Cse4
localisation. The C terminal region of Scm3 proteins is
variable in size and sometimes consists of DNA binding
motifs.
Length = 58
Score = 28.0 bits (63), Expect = 0.96
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 12/44 (27%)
Query: 207 SEEKLKSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLES 250
S+++LKS R ++I+ ++ D+ QGDE+DL +
Sbjct: 10 SDQRLKS--------RWESIIEKYGQIDDE----DQGDEIDLAT 41
>gnl|CDD|173742 cd07845, STKc_CDK10, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 10.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein Kinase 10 (CDK10) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK10 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. CDK10, also called PISSLRE, is essential for
cell growth and proliferation, and acts through the G2/M
phase of the cell cycle. CDK10 has also been identified
as an important factor in endocrine therapy resistance
in breast cancer. CDK10 silencing increases the
transcription of c-RAF and the activation of the p42/p44
MAPK pathway, which leads to antiestrogen resistance.
Patients who express low levels of CDK10 relapse early
on tamoxifen.
Length = 309
Score = 28.5 bits (64), Expect = 5.0
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 12/79 (15%)
Query: 101 EVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKPLVADGSVKSHQMYLI 160
E+V K+ DNE+ G+P +S ++ +T + +L+ V K +V + S ++L+
Sbjct: 33 EIVALKKVRMDNERDGIP----ISSLREITLLLNLRHPNIVELKEVVVGKHLDS--IFLV 86
Query: 161 FD------SQGLESMTAPF 173
+ + L++M PF
Sbjct: 87 MEYCEQDLASLLDNMPTPF 105
>gnl|CDD|239900 cd04453, S1_RNase_E, S1_RNase_E: RNase E and RNase G, S1-like
RNA-binding domain. RNase E is an essential
endoribonuclease in the processing and degradation of
RNA. In addition to its role in mRNA degradation, RNase
E has also been implicated in the processing of rRNA,
and the maturation of tRNA, 10Sa RNA and the M1
precursor of RNase P. RNase E associates with PNPase (3'
to 5' exonuclease), Rhl B (DEAD-box RNA helicase) and
enolase (glycolytic enzyme) to form the RNA
degradosome. RNase E tends to cut mRNA within
single-stranded regions that are rich in A/U
nucleotides. The N-terminal region of RNase E contains
the catalytic site. Within the conserved N-terminal
domain of RNAse E and RNase G, there is an S1-like
subdomain, which is an ancient single-stranded
RNA-binding domain. S1 domain is an RNA-binding module
originally identified in the ribosomal protein S1. The
S1 domain is required for RNA cleavage by RNase E. RNase
G is paralogous to RNase E with an N-terminal catalytic
domain that is highly homologous to that of RNase E.
RNase G not only shares sequence similarity with RNase
E, but also functionally overlaps with RNase E. In
Escherichia coli, RNase G is involved in the maturation
of the 5' end of the 16S rRNA. RNase G plays a secondary
role in mRNA decay.
Length = 88
Score = 26.8 bits (60), Expect = 5.2
Identities = 17/64 (26%), Positives = 22/64 (34%), Gaps = 13/64 (20%)
Query: 183 GFIFKVYVAGMNVKCVKRKSLPDISEEKLKSLKGFLPFSRISNLIDNDKKVHDDGKKNSQ 242
G + K+ V G+ V DI K GFL S I K K +
Sbjct: 13 GRVKKI-VPGLQAAFV------DIGLGK----NGFLHLSDILPAYFKKHKKIAKLLK--E 59
Query: 243 GDEV 246
G E+
Sbjct: 60 GQEI 63
>gnl|CDD|202724 pfam03685, UPF0147, Uncharacterized protein family (UPF0147). This
family of small proteins have no known function.
Length = 85
Score = 26.4 bits (59), Expect = 6.2
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 10/31 (32%)
Query: 76 SQNPNVPIIDSPDSIERLHNRISMLEVVTQL 106
S +PN+PI H R + +V+QL
Sbjct: 61 SNDPNMPI----------HTRTLIWNIVSQL 81
>gnl|CDD|222596 pfam14213, DUF4325, Domain of unknown function (DUF4325). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria, archaea,
eukaryotes and viruses. Proteins in this family are
typically between 99 and 341 amino acids in length.
Length = 74
Score = 26.0 bits (58), Expect = 8.4
Identities = 14/57 (24%), Positives = 20/57 (35%), Gaps = 11/57 (19%)
Query: 220 FSRISNLIDNDKKVHDDGKKNSQGDEVDLESVEMPSQSFLCELARGMREALGLNLFN 276
RI + KKV +D E VE + SFL E + + G +
Sbjct: 7 RDRIEKALKEGKKV-----------VLDFEGVESITSSFLDEAFGVLYKKHGEDELK 52
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.137 0.396
Gapped
Lambda K H
0.267 0.0776 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,578,566
Number of extensions: 1593681
Number of successful extensions: 1344
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1336
Number of HSP's successfully gapped: 22
Length of query: 327
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 230
Effective length of database: 6,635,264
Effective search space: 1526110720
Effective search space used: 1526110720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.4 bits)