RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 037279
(327 letters)
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1,
inositol 1,3,4-5/6 phosphate, inositol phosphate,
inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB:
2qb5_A* 2odt_X
Length = 346
Score = 293 bits (751), Expect = 2e-98
Identities = 84/332 (25%), Positives = 164/332 (49%), Gaps = 26/332 (7%)
Query: 4 QSQCQRFRIGYALAPKKGQSLIQPSLLTKASERGIDLIPIDPIKPLVEQGPFDCIVHKLY 63
Q+ + R+GY L+ KK + L + +RG++++ ++ +P+ EQGP D I+HKL
Sbjct: 13 QTFLKGKRVGYWLSEKKIKKLNFQAFAELCRKRGMEVVQLNLSRPIEEQGPLDVIIHKLT 72
Query: 64 ------------GPDWTRQLQQFSSQNPNVPIIDSPDSIERLHNRISMLEVVTQLKLHFD 111
+ + Q++ +P ++D +I L +R E++ +++ + +
Sbjct: 73 DVILEADQNDSQSLELVHRFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYME 132
Query: 112 NEKFGVPNQVVVSEM---KSLTSIEDLKLTFPVIAKPLVADGSVKSHQMYLIFDSQGLES 168
+++ P + ++ + ++ +E LTFP I K VA G+ SH+M ++F+ +GL +
Sbjct: 133 DDRICSPPFMELTSLCGDDTMRLLEKNGLTFPFICKTRVAHGT-NSHEMAIVFNQEGLNA 191
Query: 169 MTAPFVLQEFVNHGGFIFKVYVAGMNVKCVKRKSLPDISEEKLKSLKGFLPFSRISNLID 228
+ P V+Q F+NH ++KV+V G + V+R SL + S F +S
Sbjct: 192 IQPPCVVQNFINHNAVLYKVFVVGESYTVVQRPSLKNFSAGTSDRESIFFNSHNVSKPES 251
Query: 229 NDKKVHDDGKKNSQGDEVDLESVEMPSQSFLCELARGMREALGLNLFNFDVMRDARDSNR 288
+ D + E PS + EL+R +R+ALG++LF D++ + + +
Sbjct: 252 SSVLTELDKIEG---------VFERPSDEVIRELSRALRQALGVSLFGIDIIIN-NQTGQ 301
Query: 289 YLIIDVNYFPGYAKMPGYESIMTDFFLQVLNK 320
+ +ID+N FPGY + + + + + VL
Sbjct: 302 HAVIDINAFPGYEGVSEFFTDLLNHIATVLQG 333
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase,
ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba
histolytica} PDB: 1z2o_X* 1z2p_X*
Length = 324
Score = 272 bits (696), Expect = 2e-90
Identities = 62/330 (18%), Positives = 135/330 (40%), Gaps = 15/330 (4%)
Query: 1 MSTQSQCQRFRIGYALAPKKGQSLIQPSLLTKASERGIDLIPIDPIKPLVEQGPFDCIVH 60
+ + + Q + L K ++L + E + + L ++ P I
Sbjct: 3 LGSMTTKQTVSLFIWLPESKQKTLFISTKNHTQFELNNIIFDVTLSTELPDKEPNAIITK 62
Query: 61 KLYG-PDWTRQLQQFSSQNPNVPIIDSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPN 119
+ + +++++ +P V ++S + + +R + ++ +PN
Sbjct: 63 RTHPVGKMADEMRKYEKDHPKVLFLESSAIHDMMSSREEINALL-------IKNNIPIPN 115
Query: 120 QVVVSEMKSL-TSIEDLKLTFPVIAKPLVADGSVKSHQMYLIFDSQGLESMTAPFVLQEF 178
V + + ++ +L P I KP A G+ +HQM ++ + +G++ + P + Q +
Sbjct: 116 SFSVKSKEEVIQLLQSKQLILPFIVKPENAQGTFNAHQMKIVLEQEGIDDIHFPCLCQHY 175
Query: 179 VNHGGFIFKVYVAGMNVKCVKRKSLPDISEEKLKSLKGFL-----PFSRISNLIDNDKKV 233
+NH I KV+ G +K R SLP++ +KS+ S +ID +
Sbjct: 176 INHNNKIVKVFCIGNTLKWQTRTSLPNVHRCGIKSVDFNNQHLEDILSWPEGVIDKQDII 235
Query: 234 HDDGKKNSQGDEVDLESVEMPSQSFLCELARGMREALGLNLFNFDVMRDARDSNRYLIID 293
+ + D + + S++ + +LA +R ALG+ L D +++ L++D
Sbjct: 236 ENSANRFGSKILEDPILLNLTSEAEMRDLAYKVRCALGVQLCGIDFIKENEQ-GNPLVVD 294
Query: 294 VNYFPGYAKMPGYESIMTDFFLQVLNKSAV 323
VN FP Y ++ + L + +
Sbjct: 295 VNVFPSYGGKVDFDWFVEKVALCYTEVAKI 324
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 2.00A {Thermus thermophilus} SCOP:
c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Length = 280
Score = 61.3 bits (149), Expect = 5e-11
Identities = 43/291 (14%), Positives = 91/291 (31%), Gaps = 71/291 (24%)
Query: 29 LLTKASERGIDLIPIDPIK---PLVEQGP----FDC----IVHKLYGPDWTRQLQQFSSQ 77
L +A G+ + L E+ V + G R L
Sbjct: 16 LFERAEALGLPYKKVYVPALPMVLGERPKELEGVTVALERCVSQSRGLAAARYLTAL--- 72
Query: 78 NPNVPIIDSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKL 137
+P+++ P+ IE ++ + + + L P + ++ + + +
Sbjct: 73 --GIPVVNRPEVIEACGDKWATSVALAKAGL-------PQPKTALATDREEALRLME-AF 122
Query: 138 TFPVIAKPLVADG----SVKSHQMYLIFDSQGLESMTAP----FVLQEFVNHGGFIFKVY 189
+PV+ KP++ + E + F +QE+V G +V+
Sbjct: 123 GYPVVLKPVIGSWGRLLAXXXXXXXXXXXXXXKEVLGGFQHQLFYIQEYVEKPGRDIRVF 182
Query: 190 VAG-MNVKCVKRKSLPDISEEKLKSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDL 248
V G + + R+S + I+N G+
Sbjct: 183 VVGERAIAAIYRRS------------AHW-----ITN-------TARGGQ---------A 209
Query: 249 ESVEMPSQSFLCELARGMREALGLNLFNFDVMRDARDSNRYLIIDVNYFPG 299
E+ + + + L+ EA+G + D+ R L+ +VN+
Sbjct: 210 ENCPLTEE--VARLSVKAAEAVGGGVVAVDLFESER---GLLVNEVNHTME 255
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.0 bits (119), Expect = 6e-07
Identities = 62/349 (17%), Positives = 110/349 (31%), Gaps = 111/349 (31%)
Query: 27 PSLLTKASERG-IDLIPI--------DPIKPLVEQGPFDCIVHKLYGP---DWTR----Q 70
S L +A G L+ I D + L + +++ Y D +
Sbjct: 142 NSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRD-------LYQTYHVLVGDLIKFSAET 194
Query: 71 LQQFSSQNPNVPII---------------DSPDSIERLHNRISM-LEVVTQLKLHFDN-- 112
L + + + ++PD L IS L V QL H+
Sbjct: 195 LSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQL-AHYVVTA 253
Query: 113 EKFGVPNQVVVSEMKSLTS-IEDLKLTFPVIAKPLVADGSVKS-----HQMY-LIFDSQG 165
+ G + S +K T + L V A + S +S + ++F G
Sbjct: 254 KLLGFTPGELRSYLKGATGHSQGL-----VTAVAIAETDSWESFFVSVRKAITVLF-FIG 307
Query: 166 LESMTA-------PFVLQEFVNHGGFIFKVYVAG----M-NVKCVKRKSLPDISEEKLKS 213
+ A P +L++ + + G M ++ + ++ + ++ +
Sbjct: 308 VRCYEAYPNTSLPPSILEDSLENN--------EGVPSPMLSISNLTQEQV----QDYVNK 355
Query: 214 LKGFLPFSR---ISNLIDNDKKVHDDGKKN---SQGDEVDLESVEMPSQSFLCELARGMR 267
LP + IS L+ N G KN S G L L R +
Sbjct: 356 TNSHLPAGKQVEIS-LV-N-------GAKNLVVS-GPPQSLYG--------LNLTLRKAK 397
Query: 268 EALGLN----LFNFDVMRDARDSNRYLIIDVNYFPGYAKMPGYESIMTD 312
GL+ F+ R + SNR+L + + P + I D
Sbjct: 398 APSGLDQSRIPFS---ERKLKFSNRFLPVASPFHSHLLV-PASDLINKD 442
Score = 44.7 bits (105), Expect = 3e-05
Identities = 60/342 (17%), Positives = 105/342 (30%), Gaps = 125/342 (36%)
Query: 15 ALAPKKGQSLIQPSLLTKASERGIDLIPI--------DPIKPLVEQGPFDCIVHKLYGP- 65
+A + +L E L+ I D + L + +++ Y
Sbjct: 131 IMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRD-------LYQTYHVL 183
Query: 66 --DWTR----QLQQFSSQNPNVPII---------------DSPDSIERLHNRISM-LEVV 103
D + L + + + ++PD L IS L V
Sbjct: 184 VGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGV 243
Query: 104 TQLKLHFDN--EKFGVPNQVVVSEMKSLTS-IEDLKLTFPVIAKPLVADGS--------- 151
QL H+ + G + S +K T + L V A + S
Sbjct: 244 IQL-AHYVVTAKLLGFTPGELRSYLKGATGHSQGL-----VTAVAIAETDSWESFFVSVR 297
Query: 152 ----------VKSHQMY--------LIFDS----QGLES-MTAPFV-------LQEFVN- 180
V+ ++ Y ++ DS +G+ S M + + +Q++VN
Sbjct: 298 KAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLS--ISNLTQEQVQDYVNK 355
Query: 181 ---HGGFIFKVYVA------------------GMNVKCVKRKSLPDI-------SEEKLK 212
H +V ++ G+N+ K K+ + SE KLK
Sbjct: 356 TNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLK 415
Query: 213 SLKGFL----PF-SRISNLID-NDKKVHDDGKKNSQGDEVDL 248
FL PF S + L+ +D D K N + D+
Sbjct: 416 FSNRFLPVASPFHSHL--LVPASDLINKDLVKNNVSFNAKDI 455
Score = 41.2 bits (96), Expect = 5e-04
Identities = 41/268 (15%), Positives = 75/268 (27%), Gaps = 96/268 (35%)
Query: 47 KPLV-EQGPFDC---IVHKLYGPDWTRQLQ-QFSSQNPNVPII----DSPDSIERLHNRI 97
+PL G + + + QLQ QF+ P D P + L +
Sbjct: 7 RPLTLSHGSLEHVLLVPTASFFI--ASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKF 64
Query: 98 --------------SMLEVVTQLKLHFDNEKFGVPNQV--VVSEMKSLTSIEDLKL--TF 139
+V+ F+N + N + + + L D L T
Sbjct: 65 LGYVSSLVEPSKVGQFDQVLNLCLTEFENC-YLEGNDIHALAA---KLLQENDTTLVKTK 120
Query: 140 PVI----------AKPL-----------VADGSVKSHQMYLIFDSQGLESMTAPFV-LQE 177
+I +P V +G+ + + IF QG + F L++
Sbjct: 121 ELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQ---LVAIFGGQG--NTDDYFEELRD 175
Query: 178 FVNHGGFIFKVYVAGMNVKCVKRKSLPDISEEKLKSLKGFLPFSRISNLIDNDKKVHDDG 237
+++ Y + L S E L L + +KV G
Sbjct: 176 -------LYQTYHVLV-------GDLIKFSAETLSEL---------IRTTLDAEKVFTQG 212
Query: 238 KKNSQGDEVDLES-----VEMPSQSFLC 260
+++ P + +L
Sbjct: 213 --------LNILEWLENPSNTPDKDYLL 232
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia,
vesicle T structural genomics, structural genomics
consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo
sapiens}
Length = 344
Score = 42.1 bits (98), Expect = 2e-04
Identities = 26/164 (15%), Positives = 53/164 (32%), Gaps = 21/164 (12%)
Query: 49 LVEQGPFDCIVHKLYGPDWTRQLQQFSSQNPNVPIIDSPDSIERLHNRISMLEVVTQLKL 108
LV Q + G D+ + Q +P ++S S+ ++ + + ++
Sbjct: 90 LVRQHAYSMA----LGEDYRSLVIGL--QYGGLPAVNSLYSVYNFCSKPWVFSQLIKIFH 143
Query: 109 HFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKPLVADGSVKSHQMYLIFDSQGLES 168
EKF + Q K FPV+ K A + + + +
Sbjct: 144 SLGPEKFPLVEQTFFPNHK----PMVTAPHFPVVVKLGHAHAGMG---KIKVENQLDFQD 196
Query: 169 MT-------APFVLQEFVNHGGFIFKVYVAGMNVKCVKRKSLPD 205
+T + F++ + ++ G N K R S+
Sbjct: 197 ITSVVAMAKTYATTEAFIDS-KYDIRIQKIGSNYKAYMRTSISG 239
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.8 bits (97), Expect = 3e-04
Identities = 43/289 (14%), Positives = 88/289 (30%), Gaps = 76/289 (26%)
Query: 39 DLIPIDPIKPLVEQGPFDCIVHKLYGPDWTRQLQQFSSQNPNVPIIDSPDSIERLHNRIS 98
D++ + V+ FDC D + + S + + II S D++
Sbjct: 20 DILSVF-EDAFVDN--FDC----KDVQDMPKSI--LSKEEID-HIIMSKDAVSGTLRLFW 69
Query: 99 MLE----------VVTQLKLHFD--NEKFGV-PNQVVVSEMKSLTSIEDLKLTFPVIAKP 145
L V L++++ Q + + + L V AK
Sbjct: 70 TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK- 128
Query: 146 LVADGSVKSHQMYL--------IFDSQG--LESMT-------APFVLQEFVNHGGFIFKV 188
+V Q YL + ++ ++ + A V + FK+
Sbjct: 129 ----YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184
Query: 189 YVAGMNVKCVKRKSLPDISEEKLKSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDL 248
+ +N+K P+ E L+ L ID + D +S ++ +
Sbjct: 185 F--WLNLKNCNS---PETVLEMLQKL---------LYQIDPNWTSRSD---HSSNIKLRI 227
Query: 249 ESVEMPSQSFLCELARGMREALGLNLFNFDVMRDARDSNRYLIIDVNYF 297
S++ + L + L V+ + +++ N F
Sbjct: 228 HSIQAELRRLLKS--KPYENCL-------LVLLNVQNAK-----AWNAF 262
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus
norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A
1aux_A*
Length = 309
Score = 39.8 bits (92), Expect = 8e-04
Identities = 30/147 (20%), Positives = 54/147 (36%), Gaps = 11/147 (7%)
Query: 63 YGPDWTRQLQQFSSQNPNVPIIDSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVV 122
D+ + Q +P I+S +SI ++ + + + EKF + Q
Sbjct: 83 ENEDFRHLVIGM--QYAGLPSINSLESIYNFCDKPWVFAQMVAIFKTLGGEKFPLIEQTY 140
Query: 123 VSEMKSLTSIEDLKLTFPVIAKPLVA---DGSVKSHQMYLIFDSQGLESMTAPFVL-QEF 178
+ + ++ FPV+ K A G VK Y D + ++T + + F
Sbjct: 141 YPNHREMLTLPT----FPVVVKIGHAHSGMGKVKVENHYDFQDIASVVALTQTYATAEPF 196
Query: 179 VNHGGFIFKVYVAGMNVKCVKRKSLPD 205
++ I V G N K R S+
Sbjct: 197 IDAKYDIR-VQKIGNNYKAYMRTSISG 222
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane
protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP:
c.30.1.5 d.142.1.3 PDB: 1px2_A*
Length = 422
Score = 36.7 bits (84), Expect = 0.009
Identities = 23/165 (13%), Positives = 52/165 (31%), Gaps = 23/165 (13%)
Query: 49 LVEQGPFDCIVHKLYGPDWTRQLQQFSSQNPNVPIIDSPDSIERLHNRISMLEVVTQLKL 108
L+ Q F D+ + Q +P ++S S+ ++ + ++
Sbjct: 185 LIRQHAFS----MARNGDYRSLVIGL--QYAGIPSVNSLHSVYNFCDKPWVF-----AQM 233
Query: 109 HFDNEKFGVPNQVVVSEMKSLTSIEDLK-LTFPVIAKPLVADGSVKSHQMYLIFDSQGLE 167
++K G ++ + E L T+PV+ K + + + +
Sbjct: 234 VRLHKKLGTEEFPLIDQTFYPNHKEMLSSTTYPVVVKMG---HAHSGMGKVKVDNQHDFQ 290
Query: 168 SMT-------APFVLQEFVNHGGFIFKVYVAGMNVKCVKRKSLPD 205
+ + F++ + V G N K R S+
Sbjct: 291 DIASVVALTKTYATAEPFIDAKYDVR-VQKIGQNYKAYMRTSVSG 334
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp
domain, carbamoylphosphate synthase subunit (split gene
in MJ); 2.00A {Exiguobacterium sibiricum}
Length = 331
Score = 34.8 bits (80), Expect = 0.026
Identities = 26/215 (12%), Positives = 63/215 (29%), Gaps = 47/215 (21%)
Query: 82 PIIDSPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDLKLTFPV 141
I+ + E ++ +M E + + ++ PV
Sbjct: 101 VIVSPYAACELCFDKYTMYE-------YCLRQGIAHARTYATMASFEEALAAG-EVQLPV 152
Query: 142 IAKPLVADGSVKSHQMYLIFDSQGLESMTAPFVLQEFVNHGGFIFKVYVAGMNVKCVKRK 201
KP S++ ++ + + + L S ++QE + YV ++ K
Sbjct: 153 FVKPRNGSASIEVRRVETVEEVEQLFSKNTDLIVQELLVGQELGVDAYVDLISGKVTS-- 210
Query: 202 SLPDISEEKLKSLKGFLPFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVEMPSQSFLCE 261
I ++ +++ + S + D + E
Sbjct: 211 ----IFIKEKLTMRAG--ETDKSRSVLRDD---------------------------VFE 237
Query: 262 LARGMREALGLN-LFNFDVMRDARDSNRYLIIDVN 295
L + + GL +FD+ + + ++N
Sbjct: 238 LVEHVLDGSGLVGPLDFDLF---DVAGTLYLSEIN 269
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid
ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus
subtilis}
Length = 474
Score = 31.8 bits (72), Expect = 0.27
Identities = 16/88 (18%), Positives = 30/88 (34%), Gaps = 21/88 (23%)
Query: 86 SPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDL-----KLTFP 140
+ E ++ M + F+ V T++ED ++ P
Sbjct: 130 GVQAAENARDKNKM-------RDAFNKAGVKSIKNKRV------TTLEDFRAALEEIGTP 176
Query: 141 VIAKPLVADGSVKSHQMYLIFDSQGLES 168
+I KP S+ + LI D++ E
Sbjct: 177 LILKPTYLASSI---GVTLITDTETAED 201
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.34
Identities = 11/46 (23%), Positives = 16/46 (34%), Gaps = 20/46 (43%)
Query: 46 IKPLVEQGPFDCIVHKLYGPDWTRQLQQFSSQNPNVPIIDSPDSIE 91
+K L Q KLY D S+ P + I ++E
Sbjct: 22 LKKL--QASL-----KLYADD--------SA--PALAI---KATME 47
Score = 29.9 bits (66), Expect = 0.57
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 11/41 (26%)
Query: 113 EKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKPLVADGSVK 153
EK Q +K L + LKL A L +++
Sbjct: 18 EK-----Q----ALKKLQA--SLKLYADDSAPALAIKATME 47
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
ligase; 2.61A {Anaerococcus prevotii}
Length = 403
Score = 28.8 bits (65), Expect = 2.6
Identities = 14/108 (12%), Positives = 33/108 (30%), Gaps = 30/108 (27%)
Query: 86 SPDSIERLHNRISMLEVVTQLKLHFDNEKFGVPNQVVVSEMKSLTSIEDL-----KLTFP 140
+ ++ ++ M E +K+ V + + + +L L P
Sbjct: 100 NEEAAIMCGDKYKMKEAF---------KKYNVN----TARHFVVRNENELKNALENLKLP 146
Query: 141 VIAKPLVADGSVKSHQMYLIFDSQGLE---------SMTAPFVLQEFV 179
VI K S +Y+ + + +++EF+
Sbjct: 147 VIVKA---TDLQGSKGIYIAKKEEEAIDGFNETMNLTKRDYCIVEEFI 191
>3kt7_A PKHD-type hydroxylase TPA1; double-stranded beta helix fold,
dioxygenase, iron, mRNP complex, prolyl hydroxylase;
HET: AKG; 1.77A {Saccharomyces cerevisiae} PDB: 3kt1_A
3kt4_A 3mgu_A
Length = 633
Score = 28.8 bits (63), Expect = 3.2
Identities = 13/49 (26%), Positives = 20/49 (40%)
Query: 65 PDWTRQLQQFSSQNPNVPIIDSPDSIERLHNRISMLEVVTQLKLHFDNE 113
+ L+ F S PNVP D + N+I+ +V+ H E
Sbjct: 164 SHYGGGLRLFPSILPNVPHSDPSAKLVPQFNQIAFFKVLPGFSFHDXEE 212
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET:
ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A*
3t9d_A* 3t9e_A* 3t9f_A* 3t54_A* 3t99_A*
Length = 330
Score = 28.0 bits (62), Expect = 4.1
Identities = 29/151 (19%), Positives = 48/151 (31%), Gaps = 39/151 (25%)
Query: 173 FVLQEFVNHGGFIFKVYVAGMN-VKCVKRKSLPDISEEKLKSLKGFLPFSRISNLIDNDK 231
++ +EF+ G KVY G + RKS D
Sbjct: 198 YIYEEFMPTDGTDVKVYTVGPDYAHAEARKSPA------------------------LDG 233
Query: 232 KVHDDGKKNSQGDEVDLESVEMPSQSFLCELARGMREALGLNLFNFDVMRDARDSNRYLI 291
KV D + V L + E +A + A + FD++R + + +
Sbjct: 234 KVERDSEGKEVRYPVILNAREK-------LIAWKVCLAFKQTVCGFDLLRA---NGQSYV 283
Query: 292 IDVNYFPGYAKMPGY----ESIMTDFFLQVL 318
DVN F Y I+ + ++ L
Sbjct: 284 CDVNGFSFVKNSMKYYDDCAKILGNIVMREL 314
>1r1h_A Neprilysin; enkephalinase, glycoprotein, metalloprotease,
hydrolase; HET: NAG BIR; 1.95A {Homo sapiens} SCOP:
d.92.1.4 PDB: 1dmt_A* 1r1i_A* 1r1j_A* 1y8j_A* 2qpj_A*
2yb9_A*
Length = 696
Score = 28.2 bits (63), Expect = 4.6
Identities = 7/46 (15%), Positives = 16/46 (34%), Gaps = 1/46 (2%)
Query: 247 DLESVEMPSQSFLCELARGMREALGLN-LFNFDVMRDARDSNRYLI 291
+ + + + + G L N V D ++S ++I
Sbjct: 118 ENWEQKYGASWTAEKAIAQLNSKYGKKVLINLFVGTDDKNSVNHVI 163
>3zuk_A Endopeptidase, peptidase family M13; hydrolase-inhibitor complex,
pathogenicity, phagosome matura; HET: RDF 211 PGE PG4;
2.60A {Mycobacterium tuberculosis}
Length = 699
Score = 27.4 bits (61), Expect = 7.4
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 274 LFNFDVMRDARDSNRYLI 291
V D++DS RYL+
Sbjct: 168 GIGVYVDTDSKDSTRYLV 185
>3dwb_A ECE-1, endothelin-converting enzyme 1; protein, disease mutation,
glycoprotein, hirschsprung diseas hydrolase, membrane,
metal-binding; HET: 5HD RDF; 2.38A {Homo sapiens}
Length = 670
Score = 27.4 bits (61), Expect = 8.6
Identities = 6/38 (15%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 255 SQSFLCELARGMREALGLN-LFNFDVMRDARDSNRYLI 291
++ + + + + F+ V D+++SN +I
Sbjct: 116 AKDNFQDTLQVVTAHYRTSPFFSVYVSADSKNSNSNVI 153
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.396
Gapped
Lambda K H
0.267 0.0720 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,906,620
Number of extensions: 292093
Number of successful extensions: 677
Number of sequences better than 10.0: 1
Number of HSP's gapped: 663
Number of HSP's successfully gapped: 24
Length of query: 327
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 233
Effective length of database: 4,077,219
Effective search space: 949992027
Effective search space used: 949992027
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.8 bits)