RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 037279
         (327 letters)



>d1uc8a1 c.30.1.6 (A:1-88) Lysine biosynthesis enzyme LysX,
          N-terminal domain {Thermus thermophilus [TaxId: 274]}
          Length = 88

 Score = 28.2 bits (63), Expect = 0.40
 Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 16/75 (21%)

Query: 29 LLTKASERGIDLIPIDPIK---PLVEQGP----FDC----IVHKLYGPDWTRQLQQFSSQ 77
          L  +A   G+    +        L E+              V +  G    R L      
Sbjct: 16 LFERAEALGLPYKKVYVPALPMVLGERPKELEGVTVALERCVSQSRGLAAARYLTAL--- 72

Query: 78 NPNVPIIDSPDSIER 92
             +P+++ P+ IE 
Sbjct: 73 --GIPVVNRPEVIEA 85


>d1cmxa_ d.3.1.6 (A:) Ubiquitin carboxyl-terminal hydrolase UCH-l3
           {Synthetic, based on Saccharomyces cerevisiae sequence}
          Length = 229

 Score = 28.8 bits (64), Expect = 0.69
 Identities = 23/131 (17%), Positives = 47/131 (35%), Gaps = 7/131 (5%)

Query: 113 EKFGVPNQVVVSEMKSLTSIEDLKLTFPVIAKPLVADGSV-KSHQMYLIFDSQGLESMTA 171
            K G+ N+    ++ SLT  E L      + +P+ A   +   ++      SQ + S   
Sbjct: 18  HKLGLKNEWAYFDIYSLTEPELLAF----LPRPVKAIVLLFPINEDRKSSTSQQITSSYD 73

Query: 172 PFVLQEFVNHGGFIFKVYVAGMNVKCVKRKSLPDISEEKLKSLKGFLPFSRISNLIDNDK 231
               ++ V +   ++ +  +  N             +  LKS           + +  D+
Sbjct: 74  VIWFKQSVKNACGLYAILHSLSN--NQSLLEPGSDLDNFLKSQSDTSSSKNRFDDVTTDQ 131

Query: 232 KVHDDGKKNSQ 242
            V +  K+N Q
Sbjct: 132 FVLNVIKENVQ 142


>d1uc8a2 d.142.1.7 (A:89-280) Lysine biosynthesis enzyme LysX
           ATP-binding domain {Thermus thermophilus [TaxId: 274]}
          Length = 192

 Score = 27.6 bits (60), Expect = 1.8
 Identities = 9/82 (10%), Positives = 26/82 (31%)

Query: 219 PFSRISNLIDNDKKVHDDGKKNSQGDEVDLESVEMPSQSFLCELARGMREALGLNLFNFD 278
           P   I   +  ++ +    ++++          +  +     E+AR   +A         
Sbjct: 87  PGRDIRVFVVGERAIAAIYRRSAHWITNTARGGQAENCPLTEEVARLSVKAAEAVGGGVV 146

Query: 279 VMRDARDSNRYLIIDVNYFPGY 300
            +         L+ +VN+   +
Sbjct: 147 AVDLFESERGLLVNEVNHTMEF 168


>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId:
           562]}
          Length = 210

 Score = 26.8 bits (58), Expect = 3.3
 Identities = 7/35 (20%), Positives = 17/35 (48%), Gaps = 2/35 (5%)

Query: 72  QQFSSQNPNVPIIDSPDSIERLHNRISMLEVVTQL 106
            + ++Q+ ++  ID+   +E + + I     VT  
Sbjct: 174 LELAAQDKSIHTIDATQPLEAVMDAI--RTTVTHW 206


>d2o9ca2 d.110.3.9 (A:4-130) Bacteriophytochrome BphP {Deinococcus
           radiodurans [TaxId: 1299]}
          Length = 127

 Score = 25.6 bits (56), Expect = 5.4
 Identities = 6/35 (17%), Positives = 8/35 (22%)

Query: 26  QPSLLTKASERGIDLIPIDPIKPLVEQGPFDCIVH 60
            P+L         D +           G     VH
Sbjct: 79  WPALQAALPPGCPDALQYRATLDWPAAGHLSLTVH 113


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.137    0.396 

Gapped
Lambda     K      H
   0.267   0.0449    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,187,512
Number of extensions: 54744
Number of successful extensions: 132
Number of sequences better than 10.0: 1
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 7
Length of query: 327
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 241
Effective length of database: 1,226,816
Effective search space: 295662656
Effective search space used: 295662656
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.9 bits)