Query 037282
Match_columns 56
No_of_seqs 113 out of 767
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 18:07:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037282.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037282hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_d S36, YS29, 40S ribosoma 100.0 3.1E-37 1.1E-41 173.4 2.9 56 1-56 1-56 (56)
2 3iz6_N 40S ribosomal protein S 100.0 6.5E-37 2.2E-41 172.0 3.3 56 1-56 1-56 (56)
3 3j20_P 30S ribosomal protein S 100.0 3E-35 1E-39 165.3 4.0 56 1-56 1-56 (56)
4 2xzm_N RPS29E; ribosome, trans 100.0 2.9E-35 1E-39 164.7 3.3 55 1-56 1-55 (55)
5 2vqe_N 30S ribosomal protein S 99.8 3.9E-21 1.3E-25 108.9 3.0 47 7-55 10-59 (61)
6 3bbn_N Ribosomal protein S14; 99.7 1.1E-17 3.7E-22 102.0 2.9 46 8-55 48-98 (100)
7 3r8n_N 30S ribosomal protein S 99.6 5.9E-17 2E-21 99.0 3.0 45 8-54 48-97 (100)
8 2yqp_A Probable ATP-dependent 61.9 4.3 0.00015 22.4 1.7 22 10-31 11-32 (60)
9 3g9m_A Glucocorticoid receptor 51.9 5.3 0.00018 22.7 1.0 28 18-47 2-33 (90)
10 1ynw_B Retinoic acid receptor 36.5 13 0.00043 21.6 1.0 22 19-42 4-26 (99)
11 2nll_B Protein (thyroid hormon 35.8 9.8 0.00034 22.2 0.5 26 20-47 3-32 (103)
12 1dsz_A RAR-alpha, retinoic aci 35.2 11 0.00036 21.4 0.5 29 18-48 4-36 (86)
13 3dzy_D Peroxisome proliferator 35.0 16 0.00055 25.4 1.5 23 18-42 50-73 (419)
14 4hn5_A Glucocorticoid receptor 31.7 15 0.00053 22.0 0.9 28 18-47 29-60 (117)
15 1kb2_A Vitamin D3 receptor; VD 30.8 13 0.00045 21.9 0.5 22 19-42 7-29 (110)
16 1a6y_A Orphan nuclear receptor 29.8 13 0.00045 21.3 0.3 22 19-42 8-30 (94)
17 1dsz_B RXR-alpha, retinoic aci 29.6 13 0.00043 21.1 0.2 22 19-42 6-28 (85)
18 1lo1_A Steroid hormone recepto 29.6 14 0.00049 21.4 0.5 22 19-42 5-27 (98)
19 2han_B Ecdysone receptor; tran 29.4 13 0.00046 22.2 0.3 28 18-47 8-39 (119)
20 1cit_A NGFI-B, protein (orphan 28.8 16 0.00054 20.8 0.6 22 20-42 2-23 (89)
21 1r4i_A Androgen receptor; AR, 28.5 14 0.00047 21.7 0.2 23 18-42 7-30 (105)
22 2han_A Protein ultraspiracle; 26.0 19 0.00064 20.6 0.5 23 18-42 10-33 (93)
23 1hcq_A Protein (estrogen recep 26.0 20 0.0007 20.1 0.7 23 18-42 4-27 (84)
24 1wii_A Hypothetical UPF0222 pr 25.9 15 0.00051 21.0 0.1 20 7-26 36-55 (85)
25 3cbb_A HNF-4-alpha, hepatocyte 25.0 20 0.00067 19.9 0.5 21 20-42 2-23 (78)
26 2k0a_A PRE-mRNA-splicing facto 25.0 35 0.0012 20.7 1.6 30 14-46 53-82 (109)
27 2a66_A Orphan nuclear receptor 25.0 15 0.00052 21.8 -0.0 23 18-42 9-32 (113)
28 3oj3_I Tumor necrosis factor a 23.2 33 0.0011 18.1 1.1 19 29-49 30-48 (49)
29 3d00_A Tungsten formylmethanof 22.8 26 0.0009 22.3 0.8 33 10-45 155-187 (191)
30 3dzy_A Retinoic acid receptor 21.6 22 0.00075 25.2 0.2 27 18-46 137-167 (467)
31 2ebl_A COUP transcription fact 21.5 25 0.00085 20.0 0.5 23 18-42 7-30 (89)
32 2wsh_A Endonuclease II; GIY-YI 20.5 35 0.0012 21.3 1.0 13 43-55 8-20 (143)
33 1z2q_A LM5-1; membrane protein 20.3 67 0.0023 17.5 2.1 34 16-49 35-80 (84)
No 1
>3u5c_d S36, YS29, 40S ribosomal protein S29-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_N 3o30_S 3o2z_S 3u5g_d 3jyv_N* 1s1h_N
Probab=100.00 E-value=3.1e-37 Score=173.41 Aligned_cols=56 Identities=63% Similarity=1.268 Sum_probs=52.4
Q ss_pred CCcccchhcCCCCCCCccceeeecCCCcceeccCCCchhhHHHHhhhhhcCceeCC
Q 037282 1 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 56 (56)
Q Consensus 1 m~~~~~~~~~pr~~~r~~~rC~~cGr~~g~irkfgl~~cR~~fRe~A~~~Gf~K~~ 56 (56)
|||+|+|++|||++|+++|+|.+|||++|+|||||||+||+||||+|.+|||+||+
T Consensus 1 M~h~~~~~shpr~~G~gs~rC~vcGr~~g~iRkfGl~lcR~cfRe~A~~iGF~K~~ 56 (56)
T 3u5c_d 1 MAHENVWFSHPRRYGKGSRQCRVCSSHTGLIRKYGLNICRQCFREKANDIGFNKFR 56 (56)
T ss_dssp ---CCSSSCCCCSSSGGGCCCTTTCCCSSEECGGGCCEEHHHHHHHHHHHTCBCCC
T ss_pred CCcccccccCCcccCCCcceeecCCCCcccccccCcchhHHHHHHHHHhcCceecC
Confidence 99999999999999999999999999999999999999999999999999999996
No 2
>3iz6_N 40S ribosomal protein S29 (S14P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_n
Probab=100.00 E-value=6.5e-37 Score=171.99 Aligned_cols=56 Identities=84% Similarity=1.667 Sum_probs=47.5
Q ss_pred CCcccchhcCCCCCCCccceeeecCCCcceeccCCCchhhHHHHhhhhhcCceeCC
Q 037282 1 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 56 (56)
Q Consensus 1 m~~~~~~~~~pr~~~r~~~rC~~cGr~~g~irkfgl~~cR~~fRe~A~~~Gf~K~~ 56 (56)
|||+|+|++|||++|+++|+|.+|||++|+|||||||+||+||||+|.+|||+||+
T Consensus 1 M~h~~~~~sh~r~~G~g~~rC~vcGr~~g~iRkfGL~~cR~cfRe~A~~iGF~k~~ 56 (56)
T 3iz6_N 1 MGHSNVWNSHPKNYGAGSRVCRVCGNSHGLIRKYGLMCCRQCFRSDAKDIGFIKYR 56 (56)
T ss_dssp --------CCCCCCCCCCCCCSSCCCSCCCTTTTSCTTHHHHHHTTCCSTTCCSCC
T ss_pred CCccccccCCccccCCCcceeecCCCCcccccccCCcHHHHHHHHHHHhcCceecC
Confidence 99999999999999999999999999999999999999999999999999999996
No 3
>3j20_P 30S ribosomal protein S14P type Z; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=3e-35 Score=165.31 Aligned_cols=56 Identities=43% Similarity=0.892 Sum_probs=55.4
Q ss_pred CCcccchhcCCCCCCCccceeeecCCCcceeccCCCchhhHHHHhhhhhcCceeCC
Q 037282 1 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 56 (56)
Q Consensus 1 m~~~~~~~~~pr~~~r~~~rC~~cGr~~g~irkfgl~~cR~~fRe~A~~~Gf~K~~ 56 (56)
|+|+|+|+++||++|+++|+|.+|||++|+|||||||+||+||||+|++|||+||+
T Consensus 1 ma~~~~~~~~~r~~grg~~rC~vcGr~~g~iRkfGL~~cR~cfRe~A~~iGF~K~~ 56 (56)
T 3j20_P 1 MAKADYNKRKPRKFGKGARRCIRCGQYGPIIRIQGLMLCRHCFREVAPKLGFRKYE 56 (56)
T ss_dssp CCCCCCSCCSCCSSSSTTCCCSSSCCSSSCCCTTTCCCCHHHHHHHHHHHTCCSCC
T ss_pred CccccccCCCCcccCCCceEeecCCCCcccccccCChHHHHHHHHHHHhcCcEecC
Confidence 99999999999999999999999999999999999999999999999999999996
No 4
>2xzm_N RPS29E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_N
Probab=100.00 E-value=2.9e-35 Score=164.70 Aligned_cols=55 Identities=53% Similarity=1.213 Sum_probs=52.3
Q ss_pred CCcccchhcCCCCCCCccceeeecCCCcceeccCCCchhhHHHHhhhhhcCceeCC
Q 037282 1 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 56 (56)
Q Consensus 1 m~~~~~~~~~pr~~~r~~~rC~~cGr~~g~irkfgl~~cR~~fRe~A~~~Gf~K~~ 56 (56)
||| ++|++||+++++++|+|.+|||++|+|||||||+||+||||+|.+|||+||+
T Consensus 1 M~~-~~~~~~~~~~~r~~nrC~~cGr~rg~iRkfgl~lcR~cFRe~A~~~Gf~K~~ 55 (55)
T 2xzm_N 1 MPN-KLWRTHPRNYGKDSKECRVCGARQGLITKYEMMTCRRCFREQAPHIGFVKYR 55 (55)
T ss_dssp --C-CCCSCSCTTSSGGGCCCTTTCCSSTTCCCSSSCCCHHHHHHHHHHHTCBCCC
T ss_pred CCc-cccccCCCCCCCCceEeecCCCCcchHHHhCCchhhHHHHHHHHHhCceecC
Confidence 999 9999999999999999999999999999999999999999999999999996
No 5
>2vqe_N 30S ribosomal protein S14 type Z; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: g.39.1.7 PDB: 1gix_Q* 1hnw_N* 1hnx_N* 1hnz_N* 1hr0_N 1ibk_N* 1ibl_N* 1ibm_N 1jgo_Q* 1jgp_Q* 1jgq_Q* 1ml5_Q* 1xmo_N* 1xmq_N* 1xnq_N* 1xnr_N* 1yl4_Q 2b64_N* 2b9m_N* 2b9o_N* ...
Probab=99.82 E-value=3.9e-21 Score=108.90 Aligned_cols=47 Identities=32% Similarity=0.576 Sum_probs=43.2
Q ss_pred hhcCCCCCCCccceeeecCCCcceeccCCCchhhHHHHhhhhh---cCceeC
Q 037282 7 WNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKE---IGFVKY 55 (56)
Q Consensus 7 ~~~~pr~~~r~~~rC~~cGr~~g~irkfgl~~cR~~fRe~A~~---~Gf~K~ 55 (56)
+..+|+.+++++|+|.+|||++|+||+||| ||+||||+|.+ +|++|-
T Consensus 10 ~~~~~~~~~r~~nRC~~~GR~rg~iRkfgl--cR~~FRe~A~~g~lpGv~Ka 59 (61)
T 2vqe_N 10 AKRTPKFKVRAYTRCVRCGRARSVYRFFGL--CRICLRELAHKGQLPGVRKA 59 (61)
T ss_dssp CCSCCSSGGGCCCCCTTTCCCTTCCTTTSS--CHHHHHHHHHHTCSSSCEEC
T ss_pred hccCCCCCCCCceeeecCCCCceeeccCce--eHHHHHHHHhCCccCCeEee
Confidence 356788889999999999999999999998 99999999999 898874
No 6
>3bbn_N Ribosomal protein S14; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=99.68 E-value=1.1e-17 Score=102.05 Aligned_cols=46 Identities=28% Similarity=0.479 Sum_probs=42.4
Q ss_pred hcCCCCC--CCccceeeecCCCcceeccCCCchhhHHHHhhhhh---cCceeC
Q 037282 8 NSHPKTY--GPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKE---IGFVKY 55 (56)
Q Consensus 8 ~~~pr~~--~r~~~rC~~cGr~~g~irkfgl~~cR~~fRe~A~~---~Gf~K~ 55 (56)
..+|+++ ++++|+|.+||||+|+|++||| ||+||||+|.. +|++|=
T Consensus 48 ~~lPRns~~~r~~nRC~~tGR~rg~~r~fgl--sR~~fRe~a~~g~lpGv~Ks 98 (100)
T 3bbn_N 48 QSPPRNSAPARLHRRCFLTGRPRANIRDFGL--SGHILREMVHTCLLPGATRS 98 (100)
T ss_dssp CCSCSSCCGGGCCCCCSSSCCSSSBCTTTCS--BTTHHHHHHTTTCSSSCEEC
T ss_pred HhCCcccccccccccccCCCCCceeecccCc--HHHHHHHHHHcCCCCCeeec
Confidence 4689985 9999999999999999999999 99999999999 888873
No 7
>3r8n_N 30S ribosomal protein S14; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_N 1p87_N 2aw7_N 2avy_N 2i2u_N 2i2p_N* 2qan_N* 2qb9_N* 2qbb_N* 2qbd_N 2qbf_N 2qbh_N* 2qbj_N* 2qou_N* 2qow_N* 2qoy_N* 2qp0_N* 2vho_N 2vhp_N 2ykr_N ...
Probab=99.64 E-value=5.9e-17 Score=98.99 Aligned_cols=45 Identities=33% Similarity=0.615 Sum_probs=42.3
Q ss_pred hcCCCCC--CCccceeeecCCCcceeccCCCchhhHHHHhhhhh---cCcee
Q 037282 8 NSHPKTY--GPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKE---IGFVK 54 (56)
Q Consensus 8 ~~~pr~~--~r~~~rC~~cGr~~g~irkfgl~~cR~~fRe~A~~---~Gf~K 54 (56)
..+|+++ ++.+|||.+||||+|+|++||| ||++|||+|+. +|++|
T Consensus 48 ~~LPRnSs~~r~~nRC~~tGR~rg~~r~f~l--sR~~fRe~a~~g~lpGv~K 97 (100)
T 3r8n_N 48 QTLPRDSSPSRQRNRCRQTGRPHGFLRKFGL--SRIKVREAAMRGEIPGLKK 97 (100)
T ss_dssp CCSCSTTSGGGCCCCBTTTBCSSSCCGGGTS--CHHHHHHHHHHSCSTTEEE
T ss_pred HhcccccchhhhcccccCCCCCceecCCCCc--hHHHHHHHHHcCCCCCeee
Confidence 5789995 9999999999999999999999 99999999998 89887
No 8
>2yqp_A Probable ATP-dependent RNA helicase DDX59; structure genomics, ZF-HIT domain, DEAD box polypeptide 59 isoform 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.91 E-value=4.3 Score=22.44 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=17.4
Q ss_pred CCCCCCCccceeeecCCCccee
Q 037282 10 HPKTYGPGSRACRVCGNPHAII 31 (56)
Q Consensus 10 ~pr~~~r~~~rC~~cGr~~g~i 31 (56)
-.|.+..+...|.+|||.--+|
T Consensus 11 ~Qr~p~pgePvCvvCGryGeYI 32 (60)
T 2yqp_A 11 TQRWAEPGEPICVVCGRYGEYI 32 (60)
T ss_dssp CCCCCCTTSCCCSSSSSCCSEE
T ss_pred hhcCCCCCCceEEEecCcccee
Confidence 3455688889999999987766
No 9
>3g9m_A Glucocorticoid receptor; glucocorticoid, DNA-binding, allostery, lever ARM, transcription, hormone; HET: DNA; 1.61A {Rattus norvegicus} SCOP: g.39.1.2 PDB: 3g6p_A* 3g6q_B* 3g6r_B* 3g6u_A* 3g8u_A* 3g8x_A* 3g97_B* 3g99_A* 3g9i_A* 3g9j_A* 3fyl_A* 3g9o_B* 3g9p_B* 3g6t_A* 1r4o_A 1r4r_A 1glu_A* 1gdc_A 2gda_A 1rgd_A ...
Probab=51.95 E-value=5.3 Score=22.72 Aligned_cols=28 Identities=32% Similarity=0.923 Sum_probs=20.8
Q ss_pred cceeeecCCCc-ceeccCCCchhhHH---HHhhh
Q 037282 18 SRACRVCGNPH-AIIRKYGLMCCRQC---FRSNA 47 (56)
Q Consensus 18 ~~rC~~cGr~~-g~irkfgl~~cR~~---fRe~A 47 (56)
+..|.|||.+. |+ .||...|+-| ||...
T Consensus 2 ~~~C~VCg~~a~g~--hyGv~sC~~Ck~FFRR~v 33 (90)
T 3g9m_A 2 SHMCLVCSDEASGC--HYGVLTCGSCKVFFKRAV 33 (90)
T ss_dssp CCBCTTTCSBCCEE--ETTEEECHHHHHHHHHHH
T ss_pred CCcCccCCCcCccc--ccCCccchhHhHHhhhhh
Confidence 56799999864 44 8999888877 66543
No 10
>1ynw_B Retinoic acid receptor RXR-alpha, retinoid X receptor; VDR, nuclear receptor, protein-DNA complex, transcripti complex; 3.00A {Homo sapiens} SCOP: g.39.1.2
Probab=36.49 E-value=13 Score=21.63 Aligned_cols=22 Identities=32% Similarity=1.067 Sum_probs=15.6
Q ss_pred ceeeecCCC-cceeccCCCchhhHH
Q 037282 19 RACRVCGNP-HAIIRKYGLMCCRQC 42 (56)
Q Consensus 19 ~rC~~cGr~-~g~irkfgl~~cR~~ 42 (56)
..|.|||.+ .|+ .||...|+-|
T Consensus 4 ~~C~VCg~~a~g~--hyGv~sC~aC 26 (99)
T 1ynw_B 4 HICAICGDRSSGK--HYGVYSCEGC 26 (99)
T ss_dssp -CBTTTBSCCCBC--CTTSCBCSHH
T ss_pred CCCceeCCCCcce--eeCccchHHH
Confidence 469999986 354 8999888544
No 11
>2nll_B Protein (thyroid hormone receptor); complex (transcription regulation/DNA), DNA-binding, nuclear protein, zinc- finger, multigene family; HET: DNA 5IU; 1.90A {Homo sapiens} SCOP: g.39.1.2 PDB: 3m9e_A*
Probab=35.77 E-value=9.8 Score=22.23 Aligned_cols=26 Identities=35% Similarity=0.927 Sum_probs=18.4
Q ss_pred eeeecCCC-cceeccCCCchhhHH---HHhhh
Q 037282 20 ACRVCGNP-HAIIRKYGLMCCRQC---FRSNA 47 (56)
Q Consensus 20 rC~~cGr~-~g~irkfgl~~cR~~---fRe~A 47 (56)
.|.|||.+ .|+ .||...|+-| ||-..
T Consensus 3 ~C~VCgd~a~g~--hyGv~sC~aCk~FFRR~v 32 (103)
T 2nll_B 3 LCVVCGDKATGY--HYRCITCEGCKGFFRRTI 32 (103)
T ss_dssp BCTTTCSBCCSE--ETTEECCHHHHHHHHHHH
T ss_pred CCeEeCCcCcCe--ecCcccHHHhhhhheecc
Confidence 59999986 454 8999888655 55443
No 12
>1dsz_A RAR-alpha, retinoic acid receptor alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hra_A
Probab=35.22 E-value=11 Score=21.38 Aligned_cols=29 Identities=31% Similarity=0.872 Sum_probs=20.3
Q ss_pred cceeeecCCC-cceeccCCCchhhHH---HHhhhh
Q 037282 18 SRACRVCGNP-HAIIRKYGLMCCRQC---FRSNAK 48 (56)
Q Consensus 18 ~~rC~~cGr~-~g~irkfgl~~cR~~---fRe~A~ 48 (56)
...|.|||.+ .|+ .||...|+-| ||-...
T Consensus 4 ~~~C~VCg~~a~g~--hyGv~sC~aCk~FFRR~v~ 36 (86)
T 1dsz_A 4 YKPCFVCQDKSSGY--HYGVSACEGCKGFFRRSIQ 36 (86)
T ss_dssp --CCTTTCSCCCSE--ETTEECCHHHHHHHHHHHH
T ss_pred CCCCcEECCCccce--eeCchhHHHHHHHHHHHhh
Confidence 3469999985 454 8999999777 765543
No 13
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=35.00 E-value=16 Score=25.41 Aligned_cols=23 Identities=39% Similarity=1.125 Sum_probs=17.8
Q ss_pred cceeeecCCC-cceeccCCCchhhHH
Q 037282 18 SRACRVCGNP-HAIIRKYGLMCCRQC 42 (56)
Q Consensus 18 ~~rC~~cGr~-~g~irkfgl~~cR~~ 42 (56)
...|.|||.. .|+ .||...|+-|
T Consensus 50 ~~~C~vC~~~~~g~--hygv~~C~~C 73 (419)
T 3dzy_D 50 AIECRVCGDKASGF--HYGVHACEGC 73 (419)
T ss_dssp CCCCSSSCSCCCSB--CSSSBCCHHH
T ss_pred CCcCeECCCcCCCC--ccCcccchhh
Confidence 3469999986 465 8999988665
No 14
>4hn5_A Glucocorticoid receptor; glucocorticoid receptor, steroid receptors, NGRE, repre transcription; HET: DNA; 1.90A {Homo sapiens} PDB: 4hn6_A*
Probab=31.69 E-value=15 Score=21.98 Aligned_cols=28 Identities=29% Similarity=0.921 Sum_probs=20.5
Q ss_pred cceeeecCCCc-ceeccCCCchhhHH---HHhhh
Q 037282 18 SRACRVCGNPH-AIIRKYGLMCCRQC---FRSNA 47 (56)
Q Consensus 18 ~~rC~~cGr~~-g~irkfgl~~cR~~---fRe~A 47 (56)
...|.|||.+. |+ .||...|+-| ||...
T Consensus 29 ~~~C~VCgd~a~G~--HyGv~sC~aCk~FFRRsv 60 (117)
T 4hn5_A 29 PKLCLVCSDEASGC--HYGVLTCGSCKVFFKRAV 60 (117)
T ss_dssp -CBCTTTCSBCCEE--ETTEEECHHHHHHHHHHH
T ss_pred CCcCCcCCCcCccc--ccCCcccchhhhhhhcce
Confidence 35699999864 44 7999999877 76543
No 15
>1kb2_A Vitamin D3 receptor; VDR, nuclear receptor, protein-DNA complex, transcription/DNA complex; 2.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1kb4_A 1kb6_A 1ynw_A
Probab=30.79 E-value=13 Score=21.94 Aligned_cols=22 Identities=36% Similarity=1.052 Sum_probs=16.6
Q ss_pred ceeeecCCC-cceeccCCCchhhHH
Q 037282 19 RACRVCGNP-HAIIRKYGLMCCRQC 42 (56)
Q Consensus 19 ~rC~~cGr~-~g~irkfgl~~cR~~ 42 (56)
..|.|||.+ .|+ .||...|+-|
T Consensus 7 ~~C~VCg~~a~g~--hyGv~sC~aC 29 (110)
T 1kb2_A 7 RICGVCGDRATGF--HFNAMTCEGC 29 (110)
T ss_dssp CBCTTTCSBCCSE--ETTEECCHHH
T ss_pred CCCcEeCCCCCce--EeCchhHhhh
Confidence 469999985 354 8999888655
No 16
>1a6y_A Orphan nuclear receptor NR1D1; orphan receptor, DNA-binding, reverb, REV- ERB, transcription regulation, transcription/DNA complex; HET: DNA 5IU; 2.30A {Homo sapiens} SCOP: g.39.1.2 PDB: 1ga5_A* 1hlz_A
Probab=29.84 E-value=13 Score=21.33 Aligned_cols=22 Identities=36% Similarity=1.149 Sum_probs=16.4
Q ss_pred ceeeecCCCc-ceeccCCCchhhHH
Q 037282 19 RACRVCGNPH-AIIRKYGLMCCRQC 42 (56)
Q Consensus 19 ~rC~~cGr~~-g~irkfgl~~cR~~ 42 (56)
..|.|||.+. |+ .||...|+-|
T Consensus 8 ~~C~VCg~~a~g~--hyGv~sC~aC 30 (94)
T 1a6y_A 8 LLCKVCGDVASGF--HYGVLACEGC 30 (94)
T ss_dssp CBCTTTSSBCCEE--ETTEEECHHH
T ss_pred CcCcEeCCCCcce--EeCccchhhh
Confidence 5799999864 44 7998888654
No 17
>1dsz_B RXR-alpha, retinoic acid receptor RXR-alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1by4_A* 1rxr_A 1r0n_A 1r0o_A 2nll_A*
Probab=29.64 E-value=13 Score=21.05 Aligned_cols=22 Identities=32% Similarity=1.067 Sum_probs=16.4
Q ss_pred ceeeecCCC-cceeccCCCchhhHH
Q 037282 19 RACRVCGNP-HAIIRKYGLMCCRQC 42 (56)
Q Consensus 19 ~rC~~cGr~-~g~irkfgl~~cR~~ 42 (56)
..|.|||.+ .|+ .||...|+-|
T Consensus 6 ~~C~VCg~~a~g~--hyGv~sC~aC 28 (85)
T 1dsz_B 6 HICAICGDRSSGK--HYGVYSCEGC 28 (85)
T ss_dssp EECTTTCCEESSE--ETTEECCHHH
T ss_pred CCCCEeCCCCCce--eeCccchHHH
Confidence 579999986 454 8998888544
No 18
>1lo1_A Steroid hormone receptor ERR2; estrogen related receptor 2, DNA binding domain, HERR2, hormone nuclear receptor; NMR {Homo sapiens} SCOP: g.39.1.2
Probab=29.62 E-value=14 Score=21.36 Aligned_cols=22 Identities=41% Similarity=1.094 Sum_probs=16.5
Q ss_pred ceeeecCCCc-ceeccCCCchhhHH
Q 037282 19 RACRVCGNPH-AIIRKYGLMCCRQC 42 (56)
Q Consensus 19 ~rC~~cGr~~-g~irkfgl~~cR~~ 42 (56)
..|.|||.+. |+ .||...|+-|
T Consensus 5 ~~C~VCg~~a~g~--hyGv~sC~aC 27 (98)
T 1lo1_A 5 RLCLVCGDIASGY--HYGVASCEAC 27 (98)
T ss_dssp CEETTTTEECSEE--SSSSEECHHH
T ss_pred CCCcEeCCCCcCe--eeCccchhhh
Confidence 4699999853 44 8999888654
No 19
>2han_B Ecdysone receptor; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2 PDB: 1r0o_B 1r0n_B
Probab=29.35 E-value=13 Score=22.17 Aligned_cols=28 Identities=32% Similarity=0.903 Sum_probs=20.0
Q ss_pred cceeeecCCC-cceeccCCCchhhHH---HHhhh
Q 037282 18 SRACRVCGNP-HAIIRKYGLMCCRQC---FRSNA 47 (56)
Q Consensus 18 ~~rC~~cGr~-~g~irkfgl~~cR~~---fRe~A 47 (56)
...|.|||.+ .|+ .||...|+-| ||-..
T Consensus 8 ~~~C~VCg~~a~g~--hyGv~sC~aCk~FFRR~v 39 (119)
T 2han_B 8 EELCLVCGDRASGY--HYNALTCEGCKGFFRRSV 39 (119)
T ss_dssp SCBCTTTCSBCCEE--ETTEEECHHHHHHHHHHH
T ss_pred CCcCeEeCCcCCcc--eECchhHHhhHHhhhhhe
Confidence 3569999986 354 8999888766 55444
No 20
>1cit_A NGFI-B, protein (orphan nuclear receptor NGFI-B); early immediate response gene product, transcription factor, monomeric protein-DNA complex; HET: DNA; 2.70A {Rattus norvegicus} SCOP: g.39.1.2
Probab=28.82 E-value=16 Score=20.78 Aligned_cols=22 Identities=36% Similarity=1.072 Sum_probs=15.4
Q ss_pred eeeecCCCcceeccCCCchhhHH
Q 037282 20 ACRVCGNPHAIIRKYGLMCCRQC 42 (56)
Q Consensus 20 rC~~cGr~~g~irkfgl~~cR~~ 42 (56)
.|.|||.+.. =..||...|+-|
T Consensus 2 ~C~VCg~~a~-g~hyGv~sC~aC 23 (89)
T 1cit_A 2 RCAVCGDNAS-CQHYGVRTCEGC 23 (89)
T ss_dssp CCSSSCCCCC-EEETTEEECHHH
T ss_pred CCeEeCCCCc-ceEeCccchhhh
Confidence 4899998632 237998888655
No 21
>1r4i_A Androgen receptor; AR, steroid receptor, protein-DNA complex, transcription/DNA complex; 3.10A {Rattus norvegicus} SCOP: g.39.1.2
Probab=28.47 E-value=14 Score=21.74 Aligned_cols=23 Identities=30% Similarity=1.055 Sum_probs=17.1
Q ss_pred cceeeecCCCc-ceeccCCCchhhHH
Q 037282 18 SRACRVCGNPH-AIIRKYGLMCCRQC 42 (56)
Q Consensus 18 ~~rC~~cGr~~-g~irkfgl~~cR~~ 42 (56)
...|.|||.+. |+ .||...|+-|
T Consensus 7 ~~~C~VCg~~a~g~--hyGv~sC~aC 30 (105)
T 1r4i_A 7 QKTCLICGDEASGA--HYGALTCGSC 30 (105)
T ss_dssp CCBCSSSCSBEEEE--ETTEEEEHHH
T ss_pred CCCCcEeCCCCCce--EeCCcchhhh
Confidence 35799999863 44 8999888655
No 22
>2han_A Protein ultraspiracle; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2
Probab=25.97 E-value=19 Score=20.61 Aligned_cols=23 Identities=30% Similarity=1.013 Sum_probs=17.5
Q ss_pred cceeeecCCCc-ceeccCCCchhhHH
Q 037282 18 SRACRVCGNPH-AIIRKYGLMCCRQC 42 (56)
Q Consensus 18 ~~rC~~cGr~~-g~irkfgl~~cR~~ 42 (56)
...|.|||.+. |+ .||...|+-|
T Consensus 10 ~~~C~VCgd~a~g~--hyGv~sC~aC 33 (93)
T 2han_A 10 KHLCSICGDRASGK--HYGVYSCEGC 33 (93)
T ss_dssp CCBCTTTCSBCCEE--ETTEEECHHH
T ss_pred CCCCcEeCCCCcCe--ecCcchhHHH
Confidence 35799999863 44 8999888655
No 23
>1hcq_A Protein (estrogen receptor); protein-DNA complex, complexed with drug, transcription/DNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hcp_A 4aa6_A
Probab=25.95 E-value=20 Score=20.09 Aligned_cols=23 Identities=35% Similarity=0.964 Sum_probs=16.3
Q ss_pred cceeeecCCCc-ceeccCCCchhhHH
Q 037282 18 SRACRVCGNPH-AIIRKYGLMCCRQC 42 (56)
Q Consensus 18 ~~rC~~cGr~~-g~irkfgl~~cR~~ 42 (56)
...|.|||.+. |+ .||...|+-|
T Consensus 4 ~~~C~VCg~~a~g~--hyGv~sC~aC 27 (84)
T 1hcq_A 4 TRYCAVCNDYASGY--HYGVWSCEGC 27 (84)
T ss_dssp CCBCTTTCSBCCEE--ETTEEECHHH
T ss_pred CCcCcEECCCCCCe--eeCccchHHh
Confidence 35699999863 44 7888877544
No 24
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=25.94 E-value=15 Score=21.04 Aligned_cols=20 Identities=20% Similarity=0.330 Sum_probs=11.9
Q ss_pred hhcCCCCCCCccceeeecCC
Q 037282 7 WNSHPKTYGPGSRACRVCGN 26 (56)
Q Consensus 7 ~~~~pr~~~r~~~rC~~cGr 26 (56)
.-..-++.+.+.-.|.+||-
T Consensus 36 ~vkidk~~~~g~l~C~~Cg~ 55 (85)
T 1wii_A 36 DVKMDRARNTGVISCTVCLE 55 (85)
T ss_dssp EEEEETTTTEEEEEESSSCC
T ss_pred EEEEEccCCEEEEEcccCCC
Confidence 33334455666777777775
No 25
>3cbb_A HNF-4-alpha, hepatocyte nuclear factor 4-alpha, DNA binding domain, nuclear; zinc finger; 2.00A {Homo sapiens}
Probab=25.04 E-value=20 Score=19.86 Aligned_cols=21 Identities=33% Similarity=1.023 Sum_probs=15.3
Q ss_pred eeeecCCC-cceeccCCCchhhHH
Q 037282 20 ACRVCGNP-HAIIRKYGLMCCRQC 42 (56)
Q Consensus 20 rC~~cGr~-~g~irkfgl~~cR~~ 42 (56)
.|.|||.+ .|+ .||...|+-|
T Consensus 2 ~C~VCg~~a~g~--hyGv~sC~aC 23 (78)
T 3cbb_A 2 LCAICGDRATGK--HYGASSCDGC 23 (78)
T ss_dssp BCTTTSSBCCSE--ETTEECCHHH
T ss_pred CCeEeCCCCCce--EeCCcchhhh
Confidence 48899986 354 7888888654
No 26
>2k0a_A PRE-mRNA-splicing factor RDS3; zinc finger, topological knot, mRNA processing, nucleus, spliceosome, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=24.99 E-value=35 Score=20.70 Aligned_cols=30 Identities=20% Similarity=0.639 Sum_probs=22.9
Q ss_pred CCCccceeeecCCCcceeccCCCchhhHHHHhh
Q 037282 14 YGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSN 46 (56)
Q Consensus 14 ~~r~~~rC~~cGr~~g~irkfgl~~cR~~fRe~ 46 (56)
+|....+|.+||...|+-. -+.|+.|-+.-
T Consensus 53 ~G~~~~rCIiCg~~~g~~d---AYYC~eC~~lE 82 (109)
T 2k0a_A 53 FGKQAKNCIICNLNVGVND---AFYCWECCRLG 82 (109)
T ss_dssp TSSTTSBCTTTSSSBCCEE---CEECHHHHHHT
T ss_pred CCCcCCceEEcCCCCCccc---ceehHhhhhhh
Confidence 5777899999998777655 45688887653
No 27
>2a66_A Orphan nuclear receptor NR5A2; protein-DNA complex, zinc finger, DNA- binding domain, transcription factor, FTZ-F1, C-terminal extension; 2.20A {Homo sapiens} PDB: 2ff0_A
Probab=24.96 E-value=15 Score=21.84 Aligned_cols=23 Identities=39% Similarity=1.123 Sum_probs=16.9
Q ss_pred cceeeecCCC-cceeccCCCchhhHH
Q 037282 18 SRACRVCGNP-HAIIRKYGLMCCRQC 42 (56)
Q Consensus 18 ~~rC~~cGr~-~g~irkfgl~~cR~~ 42 (56)
...|.|||.+ .|+ .||...|+-|
T Consensus 9 ~~~C~VCgd~a~G~--HyGv~sC~aC 32 (113)
T 2a66_A 9 EELCPVCGDKVSGY--HYGLLTCESC 32 (113)
T ss_dssp -CBCTTTCCBEEEE--ETTEEEEHHH
T ss_pred CCCCcEeCCCCcce--eeCcccHHHH
Confidence 3569999986 344 8999888665
No 28
>3oj3_I Tumor necrosis factor alpha-induced protein 3; ubiquitin, zinc finger, zinc ION, protein binding-hydrolase; 2.50A {Homo sapiens} PDB: 3oj4_C
Probab=23.22 E-value=33 Score=18.11 Aligned_cols=19 Identities=21% Similarity=0.546 Sum_probs=13.3
Q ss_pred ceeccCCCchhhHHHHhhhhh
Q 037282 29 AIIRKYGLMCCRQCFRSNAKE 49 (56)
Q Consensus 29 g~irkfgl~~cR~~fRe~A~~ 49 (56)
|-...=|+ |-.|+||+..+
T Consensus 30 G~p~t~n~--CSkCyre~~en 48 (49)
T 3oj3_I 30 GTPENKGF--CTLCFIEYREN 48 (49)
T ss_dssp CBGGGTTB--CHHHHHHHHHH
T ss_pred cCcccCCc--chHHHHHHHHc
Confidence 44445566 99999998653
No 29
>3d00_A Tungsten formylmethanofuran dehydrogenase subunit; FWDE/GAPDH domain-like fold, structural genomics, joint CENT structural genomics; HET: MSE; 1.90A {Syntrophus aciditrophicus}
Probab=22.78 E-value=26 Score=22.26 Aligned_cols=33 Identities=15% Similarity=0.165 Sum_probs=21.7
Q ss_pred CCCCCCCccceeeecCCCcceeccCCCchhhHHHHh
Q 037282 10 HPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRS 45 (56)
Q Consensus 10 ~pr~~~r~~~rC~~cGr~~g~irkfgl~~cR~~fRe 45 (56)
.|.+.-..+-.|..||-.---. |-.+|+.||-+
T Consensus 155 ~p~~~~~~~~~C~~CGE~~~~~---g~~~C~~C~~~ 187 (191)
T 3d00_A 155 LEKKHKGKIVLCPQCREAYPAQ---DGELCLSCQGG 187 (191)
T ss_dssp GCCCCCCCEEECTTTCCEEEGG---GCSSCHHHHTT
T ss_pred CCCcCCcCCEECCcCCCChhhC---CCcCCccccCC
Confidence 3443334778899999753222 55669999854
No 30
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A*
Probab=21.57 E-value=22 Score=25.23 Aligned_cols=27 Identities=30% Similarity=0.994 Sum_probs=20.5
Q ss_pred cceeeecCCC-cceeccCCCchhhHH---HHhh
Q 037282 18 SRACRVCGNP-HAIIRKYGLMCCRQC---FRSN 46 (56)
Q Consensus 18 ~~rC~~cGr~-~g~irkfgl~~cR~~---fRe~ 46 (56)
...|.|||.. .|+ .||...|+-| ||..
T Consensus 137 ~~~C~VCg~~a~g~--hygv~sC~~Ck~FFrR~ 167 (467)
T 3dzy_A 137 KHICAICGDRSSGK--HYGVYSCEGCKGFFKRT 167 (467)
T ss_dssp CEECTTTSSEECSE--ETTEECCHHHHHHHHHH
T ss_pred CCcceeCCCCCCCC--cCCCcchhhhhHhcccc
Confidence 3569999986 464 8999989877 6643
No 31
>2ebl_A COUP transcription factor 1; DNA-binding, metal-binding, nuclear protein, receptor, transcription regulation, zinc, EAR3, erbal3 tfcoup1; NMR {Homo sapiens}
Probab=21.50 E-value=25 Score=19.96 Aligned_cols=23 Identities=35% Similarity=0.951 Sum_probs=16.9
Q ss_pred cceeeecCCC-cceeccCCCchhhHH
Q 037282 18 SRACRVCGNP-HAIIRKYGLMCCRQC 42 (56)
Q Consensus 18 ~~rC~~cGr~-~g~irkfgl~~cR~~ 42 (56)
...|.|||.+ .|+ .||...|+-|
T Consensus 7 ~~~C~VCg~~a~g~--hyGv~sC~aC 30 (89)
T 2ebl_A 7 GIECVVCGDKSSGK--HYGQFTCEGC 30 (89)
T ss_dssp SCBCTTTCSBCCSE--ETTEECCHHH
T ss_pred CCCCcEeCCCCcce--EeCchhhHHh
Confidence 3569999986 354 8999888654
No 32
>2wsh_A Endonuclease II; GIY-YIG, hydrolase; 1.90A {Enterobacteria phage T4}
Probab=20.48 E-value=35 Score=21.32 Aligned_cols=13 Identities=38% Similarity=0.733 Sum_probs=11.2
Q ss_pred HHhhhhhcCceeC
Q 037282 43 FRSNAKEIGFVKY 55 (56)
Q Consensus 43 fRe~A~~~Gf~K~ 55 (56)
..|.|.+.||+||
T Consensus 8 ~~~~~~~~gF~k~ 20 (143)
T 2wsh_A 8 MKEIATEYSFIKY 20 (143)
T ss_dssp HHHHHHHTTCEEE
T ss_pred HHHHHhhcCceEE
Confidence 4688999999997
No 33
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=20.29 E-value=67 Score=17.47 Aligned_cols=34 Identities=26% Similarity=0.528 Sum_probs=20.4
Q ss_pred CccceeeecCC--------CcceeccCC----CchhhHHHHhhhhh
Q 037282 16 PGSRACRVCGN--------PHAIIRKYG----LMCCRQCFRSNAKE 49 (56)
Q Consensus 16 r~~~rC~~cGr--------~~g~irkfg----l~~cR~~fRe~A~~ 49 (56)
+-+..|+.||+ .+.++..++ .-+|..|+.++...
T Consensus 35 ~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~~l~~~ 80 (84)
T 1z2q_A 35 VRRHHCRNCGYVLCGDCSRHRAAIPMRGITEPERVCDACYLALRSS 80 (84)
T ss_dssp SCCEECTTTCCEECTGGGCCEEEETTTTEEEEEECCHHHHHHHHTS
T ss_pred hhcccccCCCcEEChHHhCCeEeccCCCCCCCCEECHHHHHHHhhc
Confidence 34466666665 344555555 22488998877544
Done!