Query 037283
Match_columns 136
No_of_seqs 83 out of 85
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 18:08:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037283.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037283hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k0a_A PRE-mRNA-splicing facto 100.0 2.7E-68 9.3E-73 395.7 0.1 104 28-131 4-108 (109)
2 2fiy_A Protein FDHE homolog; F 83.5 0.61 2.1E-05 38.5 2.7 79 53-131 182-295 (309)
3 2jrp_A Putative cytoplasmic pr 75.2 2 6.9E-05 29.9 2.8 40 56-104 21-60 (81)
4 3ql9_A Transcriptional regulat 64.8 1.1 3.8E-05 33.2 -0.4 49 55-115 10-79 (129)
5 2xb1_A Pygopus homolog 2, B-ce 63.5 3.3 0.00011 28.9 1.8 47 55-104 5-61 (105)
6 2ctt_A DNAJ homolog subfamily 59.8 5 0.00017 27.1 2.1 48 47-101 29-87 (104)
7 2apo_B Ribosome biogenesis pro 55.8 3.7 0.00013 27.2 0.9 27 67-93 4-30 (60)
8 2aus_D NOP10, ribosome biogene 47.7 4 0.00014 27.1 0.1 27 67-93 3-29 (60)
9 2akl_A PHNA-like protein PA012 46.7 5.4 0.00018 30.6 0.6 27 54-80 28-55 (138)
10 1we9_A PHD finger family prote 45.2 11 0.00038 23.3 1.8 49 54-103 7-57 (64)
11 2dkt_A Ring finger and CHY zin 45.0 7.9 0.00027 29.3 1.3 40 63-104 52-92 (143)
12 2jne_A Hypothetical protein YF 45.0 2.7 9.2E-05 30.8 -1.2 51 54-104 33-90 (101)
13 3pwf_A Rubrerythrin; non heme 44.6 7.9 0.00027 29.0 1.3 25 67-91 136-163 (170)
14 2yqq_A Zinc finger HIT domain- 43.3 5.9 0.0002 25.8 0.3 37 70-114 13-49 (56)
15 1exk_A DNAJ protein; extended 40.2 13 0.00046 23.4 1.7 19 83-101 52-70 (79)
16 1pft_A TFIIB, PFTFIIBN; N-term 39.7 11 0.00036 22.6 1.1 23 55-77 7-32 (50)
17 2lbm_A Transcriptional regulat 36.1 3.5 0.00012 30.9 -1.9 28 64-91 35-73 (142)
18 1wew_A DNA-binding family prot 36.0 16 0.00055 23.8 1.6 53 55-110 18-78 (78)
19 2egq_A FHL1 protein; LIM domai 35.8 18 0.00063 22.1 1.8 12 54-65 16-27 (77)
20 3j20_Y 30S ribosomal protein S 34.4 11 0.00038 23.5 0.6 24 56-79 22-47 (50)
21 1wev_A Riken cDNA 1110020M19; 32.7 52 0.0018 22.0 3.8 53 53-109 16-77 (88)
22 1tfi_A Transcriptional elongat 30.5 33 0.0011 21.2 2.3 14 65-78 33-46 (50)
23 1l8d_A DNA double-strand break 30.3 7.2 0.00025 26.3 -0.9 13 53-65 47-59 (112)
24 2lv9_A Histone-lysine N-methyl 29.2 16 0.00054 25.0 0.7 34 68-102 41-74 (98)
25 1zfo_A LAsp-1; LIM domain, zin 27.6 18 0.00063 20.0 0.7 17 54-70 4-20 (31)
26 3f6q_B LIM and senescent cell 27.4 21 0.00071 21.2 0.9 16 54-69 12-27 (72)
27 2yt5_A Metal-response element- 26.7 82 0.0028 19.2 3.7 51 53-107 6-64 (66)
28 3h0g_I DNA-directed RNA polyme 26.2 33 0.0011 23.9 2.0 32 55-86 6-44 (113)
29 1v5n_A PDI-like hypothetical p 26.2 15 0.00051 24.9 0.1 18 84-101 50-67 (89)
30 2ehe_A Four and A half LIM dom 26.0 31 0.0011 21.4 1.6 13 54-66 16-28 (82)
31 1x4k_A Skeletal muscle LIM-pro 24.4 38 0.0013 20.3 1.8 13 54-66 6-18 (72)
32 3u5c_d S36, YS29, 40S ribosoma 24.0 26 0.00088 22.8 1.0 28 76-103 13-44 (56)
33 3j20_P 30S ribosomal protein S 23.5 33 0.0011 22.3 1.4 28 76-103 13-44 (56)
34 1lko_A Rubrerythrin all-iron(I 23.4 13 0.00043 28.0 -0.7 24 67-90 153-180 (191)
35 3iz6_N 40S ribosomal protein S 23.2 23 0.00079 23.0 0.6 28 76-103 13-44 (56)
36 2e6s_A E3 ubiquitin-protein li 22.4 72 0.0025 21.0 3.0 64 31-102 10-75 (77)
37 1vdd_A Recombination protein R 22.2 17 0.00059 29.5 -0.2 34 66-99 51-84 (228)
38 1dl6_A Transcription factor II 22.0 34 0.0011 21.6 1.2 23 55-77 13-38 (58)
39 1qyp_A RNA polymerase II; tran 21.6 50 0.0017 20.1 1.9 15 64-78 38-52 (57)
40 3o9x_A Uncharacterized HTH-typ 21.4 29 0.00099 23.3 0.8 15 94-108 35-49 (133)
41 3asl_A E3 ubiquitin-protein li 20.7 57 0.0019 21.0 2.1 52 47-102 14-67 (70)
42 1ryq_A DNA-directed RNA polyme 20.5 26 0.0009 23.7 0.5 16 97-113 13-28 (69)
43 1ovx_A ATP-dependent CLP prote 20.3 87 0.003 21.0 3.0 30 71-104 20-49 (67)
44 3vdp_A Recombination protein R 20.1 21 0.00071 28.6 -0.1 34 66-99 65-98 (212)
45 1vq8_Z 50S ribosomal protein L 20.1 22 0.00075 24.3 0.0 24 55-78 29-54 (83)
No 1
>2k0a_A PRE-mRNA-splicing factor RDS3; zinc finger, topological knot, mRNA processing, nucleus, spliceosome, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-68 Score=395.70 Aligned_cols=104 Identities=53% Similarity=1.120 Sum_probs=101.1
Q ss_pred cccCcceeeeccCCCcccccccccCCCceecccCCCCCceeeEecCCCCCCCcCCeeEEec-CCCccceeeehhhhhhhc
Q 037283 28 VSIWTSSLLCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICG-GVGISDAYYCKECTQQEK 106 (136)
Q Consensus 28 ~~~~~DLi~C~KqpG~~iG~lC~kCdGkCpICDS~Vrp~~~VrICdeCs~G~~~~rCIiCg-~~g~sdAYYC~EC~~lEK 106 (136)
.+|||||||||||||++||+||++||||||||||||||.++||||||||||++++|||||| ++|++||||||||++|||
T Consensus 4 srH~~DLimC~KqpG~~iG~lCekcdGkC~iCDs~Vrp~~~VrICdeCs~G~~~~rCIiCg~~~g~~dAYYC~eC~~lEK 83 (109)
T 2k0a_A 4 SRHQFDLIMCLKQPGVQTGLLCEKCDGKCPICDSYVRPKRKVRVCENCSFGKQAKNCIICNLNVGVNDAFYCWECCRLGK 83 (109)
T ss_dssp SSCCTTCCBCCCCEEEEECEECGGGTTCCTTTCCCCCCCEECEEEHHHHTSSTTSBCTTTSSSBCCEECEECHHHHHHTS
T ss_pred cccCchhhhccCCCcchhhhhhhhcCCcccccCCccCCcceEEECCcCCCCCcCCceEEcCCCCCcccceehHhhhhhhc
Confidence 3569999999999999999999999999999999999999999999999999999999999 899999999999999999
Q ss_pred cCCCCcceeccCCchhHHHHHHhhh
Q 037283 107 DRDGCPKIVNLGSAKTDLFYERKKY 131 (136)
Q Consensus 107 DRDGCPrIiN~Gs~ktD~~yekkk~ 131 (136)
||||||||||+||+|||+|||+||+
T Consensus 84 DRDGCPriiN~Gs~ktD~~y~~kk~ 108 (109)
T 2k0a_A 84 DKDGCPRILNLGSNRLDRHFEKKKK 108 (109)
T ss_dssp TTSCCCCBCSCSSCSSTTCCCSSTT
T ss_pred cccCCCeeEecCcchhhHHhHhhcc
Confidence 9999999999999999999998874
No 2
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=83.52 E-value=0.61 Score=38.47 Aligned_cols=79 Identities=23% Similarity=0.355 Sum_probs=58.2
Q ss_pred CCceecccCC-----CCC-----ceeeEecCCCCCCC--cCCeeEEecCCC-----------------ccceeeehhhhh
Q 037283 53 DGKCVICDSY-----VRP-----CTLVRVCDECNYGS--FQGRCVICGGVG-----------------ISDAYYCKECTQ 103 (136)
Q Consensus 53 dGkCpICDS~-----Vrp-----~~~VrICdeCs~G~--~~~rCIiCg~~g-----------------~sdAYYC~EC~~ 103 (136)
.|.||+|.|. |+. -.+.-.|..|++.- ...+|..||..+ ..-++-|..|..
T Consensus 182 ~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~~~l~y~~~e~~~~~~~~~~~r~e~C~~C~~ 261 (309)
T 2fiy_A 182 RTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEESKHLAYLSLEHDGQPAEKAVLRAETCPSCQG 261 (309)
T ss_dssp CSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCCSCCEEECCCC-CCCSTTCSEEEEEETTTTE
T ss_pred CCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCCCCeeEEEecCccccCCCcceEEEEcccccc
Confidence 7999999986 442 33577899999744 477999999743 123788999953
Q ss_pred ------hhccCCCCcceeccCCchhHHHHHHhhh
Q 037283 104 ------QEKDRDGCPKIVNLGSAKTDLFYERKKY 131 (136)
Q Consensus 104 ------lEKDRDGCPrIiN~Gs~ktD~~yekkk~ 131 (136)
+|||.+-=|-.-+++|---|+..+.+-+
T Consensus 262 YlK~~~~~~d~~~dp~adDlatL~LDl~a~e~Gy 295 (309)
T 2fiy_A 262 YLKQFYLEFDRHADALADDLASLALDMRLAEDGY 295 (309)
T ss_dssp EEEEEETTTCTTCCHHHHHHTTHHHHHHHHHTTC
T ss_pred hHhhhhhccCCCCCcchhHHHHHHHHHHHHhcCC
Confidence 5777665566668999999998887644
No 3
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=75.23 E-value=2 Score=29.94 Aligned_cols=40 Identities=20% Similarity=0.545 Sum_probs=23.4
Q ss_pred eecccCCCCCceeeEecCCCCCCCcCCeeEEecCCCccceeeehhhhhh
Q 037283 56 CVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQ 104 (136)
Q Consensus 56 CpICDS~Vrp~~~VrICdeCs~G~~~~rCIiCg~~g~sdAYYC~EC~~l 104 (136)
|.-|++.+.+.. .|.+|..-- ..|--||+ ..|+|.+|..|
T Consensus 21 C~~C~~~~~~~a---fCPeCgq~L--e~lkACGA----~~yFC~~C~~L 60 (81)
T 2jrp_A 21 CETCAKDFSLQA---LCPDCRQPL--QVLKACGA----VDYFCQNGHGL 60 (81)
T ss_dssp CTTTCCEEEEEE---ECSSSCSCC--CEEEETTE----EEECCTTTTCC
T ss_pred CccccccCCCcc---cCcchhhHH--HHHHhcCC----cCeeeccCCCE
Confidence 444444433322 666665443 44666765 38999999655
No 4
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=64.76 E-value=1.1 Score=33.16 Aligned_cols=49 Identities=24% Similarity=0.633 Sum_probs=33.0
Q ss_pred ceecccCCC----------CCceeeEecCCCCC-----------CCcCCeeEEecCCCccceeeehhhhhhhccCCCCcc
Q 037283 55 KCVICDSYV----------RPCTLVRVCDECNY-----------GSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPK 113 (136)
Q Consensus 55 kCpICDS~V----------rp~~~VrICdeCs~-----------G~~~~rCIiCg~~g~sdAYYC~EC~~lEKDRDGCPr 113 (136)
.|-.|++.+ .|.-+|-+|..|.. ..+++.|-+|+. ..+.+.| |.||+
T Consensus 10 ~Ct~Cg~~~~~~~~~~~~~HPll~v~~C~~C~~~y~~~~~~~d~Dg~~~~C~vC~d--GG~LlcC----------d~Cpr 77 (129)
T 3ql9_A 10 SCTACGQQVNHFQKDSIYRHPSLQVLICKNCFKYYMSDDISRDSDGMDEQCRWCAE--GGNLICC----------DFCHN 77 (129)
T ss_dssp BCTTTCCBCCCCBTTTEEECTTTCCEEEHHHHHHHHHSCCCBCTTSCBSSCTTTCC--CSEEEEC----------SSSSC
T ss_pred EeccCCCCCcccCCCccccCCCcCceeCHhHHhhhhccccccCCCCCCCcCeecCC--CCeeEec----------CCCch
Confidence 466666655 46678999999975 335667888986 3345666 46777
Q ss_pred ee
Q 037283 114 IV 115 (136)
Q Consensus 114 Ii 115 (136)
+-
T Consensus 78 ~F 79 (129)
T 3ql9_A 78 AF 79 (129)
T ss_dssp EE
T ss_pred hh
Confidence 65
No 5
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=63.50 E-value=3.3 Score=28.88 Aligned_cols=47 Identities=26% Similarity=0.571 Sum_probs=34.2
Q ss_pred ceecccCCCCCceeeEecC-CCCCCCcCCeeEEecCCC---------ccceeeehhhhhh
Q 037283 55 KCVICDSYVRPCTLVRVCD-ECNYGSFQGRCVICGGVG---------ISDAYYCKECTQQ 104 (136)
Q Consensus 55 kCpICDS~Vrp~~~VrICd-eCs~G~~~~rCIiCg~~g---------~sdAYYC~EC~~l 104 (136)
.|++|.....+...--+|| .|. .-+-..|| |... ....|+|..|...
T Consensus 5 ~C~iC~~p~~~~~~mi~Cdd~C~-~WfH~~CV--glt~~~~~~i~~~~~~~~~Cp~C~~~ 61 (105)
T 2xb1_A 5 PCGACRSEVNDDQDAILCEASCQ-KWFHRECT--GMTESAYGLLTTEASAVWACDLCLKT 61 (105)
T ss_dssp BCTTTCSBCCTTSCEEECTTTTC-CEEEGGGT--TCCHHHHHHHHHCTTEEECCHHHHHT
T ss_pred CCCCCCCccCCCCCEEEecCCcc-cccccccC--CcCHHHHHhhccCCCCCEECccccCc
Confidence 5899998888877788998 896 55667776 2211 1268999999764
No 6
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.78 E-value=5 Score=27.11 Aligned_cols=48 Identities=40% Similarity=0.790 Sum_probs=23.9
Q ss_pred cccccCCCceecccCCCCCceeeEecCCCCCCCc-----------CCeeEEecCCCccceeeehhh
Q 037283 47 RLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSF-----------QGRCVICGGVGISDAYYCKEC 101 (136)
Q Consensus 47 ~lC~kCdGkCpICDS~Vrp~~~VrICdeCs~G~~-----------~~rCIiCg~~g~sdAYYC~EC 101 (136)
..|+.|+|.= .+|.+.+..|..|+ |+. +..|-.|++.|..-.--|..|
T Consensus 29 ~~C~~C~G~G------~~~g~~~~~C~~C~-G~G~~~~~~G~~~~~~~C~~C~G~G~~i~~~C~~C 87 (104)
T 2ctt_A 29 DTCERCNGKG------NEPGTKVQHCHYCG-GSGMETINTGPFVMRSTCRRCGGRGSIIISPCVVC 87 (104)
T ss_dssp EECSSSSSSS------SCTTCCCEECSSSS-SSCEEEEEETTEEEEEECSSSSSSSEECSSCCSSS
T ss_pred eECCCCcCCc------cCCCCCCccCCCCC-CCEEEEEEeCCEEEEEECCcCCCcceECCCcCCCC
Confidence 4577776641 23444455555554 221 234666666554433345555
No 7
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=55.82 E-value=3.7 Score=27.15 Aligned_cols=27 Identities=19% Similarity=0.555 Sum_probs=22.0
Q ss_pred eeeEecCCCCCCCcCCeeEEecCCCcc
Q 037283 67 TLVRVCDECNYGSFQGRCVICGGVGIS 93 (136)
Q Consensus 67 ~~VrICdeCs~G~~~~rCIiCg~~g~s 93 (136)
.+.+.|..|..=++...|..||++..+
T Consensus 4 s~mr~C~~CgvYTLk~~CP~CG~~T~~ 30 (60)
T 2apo_B 4 MRMKKCPKCGLYTLKEICPKCGEKTVI 30 (60)
T ss_dssp CCCEECTTTCCEESSSBCSSSCSBCBC
T ss_pred hhceeCCCCCCEeccccCcCCCCcCCC
Confidence 467889999888889999999987643
No 8
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=47.72 E-value=4 Score=27.10 Aligned_cols=27 Identities=22% Similarity=0.593 Sum_probs=21.5
Q ss_pred eeeEecCCCCCCCcCCeeEEecCCCcc
Q 037283 67 TLVRVCDECNYGSFQGRCVICGGVGIS 93 (136)
Q Consensus 67 ~~VrICdeCs~G~~~~rCIiCg~~g~s 93 (136)
.+.+.|..|+.-++.+.|..||.+..+
T Consensus 3 s~mr~C~~Cg~YTLk~~CP~CG~~t~~ 29 (60)
T 2aus_D 3 FRIRKCPKCGRYTLKETCPVCGEKTKV 29 (60)
T ss_dssp -CCEECTTTCCEESSSBCTTTCSBCEE
T ss_pred ccceECCCCCCEEccccCcCCCCccCC
Confidence 467889999888888999999987643
No 9
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=46.69 E-value=5.4 Score=30.57 Aligned_cols=27 Identities=30% Similarity=0.507 Sum_probs=21.5
Q ss_pred CceecccC-CCCCceeeEecCCCCCCCc
Q 037283 54 GKCVICDS-YVRPCTLVRVCDECNYGSF 80 (136)
Q Consensus 54 GkCpICDS-~Vrp~~~VrICdeCs~G~~ 80 (136)
-.||-|.| |+-+.....||.||++--.
T Consensus 28 P~CP~C~seytYeDg~l~vCPeC~hEW~ 55 (138)
T 2akl_A 28 PPCPQCNSEYTYEDGALLVCPECAHEWS 55 (138)
T ss_dssp CCCTTTCCCCCEECSSSEEETTTTEEEC
T ss_pred CCCCCCCCcceEecCCeEECCccccccC
Confidence 57899988 5667777799999998653
No 10
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=45.24 E-value=11 Score=23.31 Aligned_cols=49 Identities=27% Similarity=0.616 Sum_probs=32.0
Q ss_pred CceecccCCCCCceeeEecCCCCCCCcCCeeEEecCCCc--cceeeehhhhh
Q 037283 54 GKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGI--SDAYYCKECTQ 103 (136)
Q Consensus 54 GkCpICDS~Vrp~~~VrICdeCs~G~~~~rCIiCg~~g~--sdAYYC~EC~~ 103 (136)
-.|++|.....+...---||.|. --+..+|+-=....+ .+.|+|..|..
T Consensus 7 ~~C~~C~~~~~~~~~mI~Cd~C~-~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 7 GQCGACGESYAADEFWICCDLCE-MWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp CCCSSSCCCCCSSSCEEECSSSC-CEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCccCCCCCEEEccCCC-CCCCccccCcChhHhcCCCcEECCCCcC
Confidence 35889987766656666799997 445566763222211 36899999964
No 11
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=44.99 E-value=7.9 Score=29.32 Aligned_cols=40 Identities=25% Similarity=0.416 Sum_probs=29.6
Q ss_pred CCCceeeEecCCCCCCC-cCCeeEEecCCCccceeeehhhhhh
Q 037283 63 VRPCTLVRVCDECNYGS-FQGRCVICGGVGISDAYYCKECTQQ 104 (136)
Q Consensus 63 Vrp~~~VrICdeCs~G~-~~~rCIiCg~~g~sdAYYC~EC~~l 104 (136)
.|..+..-+|-.|+.-. .+..|+-||. ..+.|||..|-..
T Consensus 52 ~r~~~~~vlCg~C~~~q~~~~~C~~Cg~--~f~~Y~C~~C~l~ 92 (143)
T 2dkt_A 52 DRFKVKEVQCINCEKLQHAQQTCEDCST--LFGEYYCSICHLF 92 (143)
T ss_dssp CSSSCCCEEESSSCCEECSCSBCSSSCC--BSCSEECSSSCCE
T ss_pred chhccceeeecccCccccccCcCCCCCc--cceeeEeceeecc
Confidence 34466778888888633 4568888887 6778999888766
No 12
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=44.99 E-value=2.7 Score=30.76 Aligned_cols=51 Identities=16% Similarity=0.285 Sum_probs=25.7
Q ss_pred CceecccCCCCCceeeEecCCCCCCC-cCCeeEEecCCC------ccceeeehhhhhh
Q 037283 54 GKCVICDSYVRPCTLVRVCDECNYGS-FQGRCVICGGVG------ISDAYYCKECTQQ 104 (136)
Q Consensus 54 GkCpICDS~Vrp~~~VrICdeCs~G~-~~~rCIiCg~~g------~sdAYYC~EC~~l 104 (136)
-.||.|...+.+......|+.|.--- .+..|.-|+.+- .+.-|.|..|-.|
T Consensus 33 ~~CP~Cq~eL~~~g~~~hC~~C~~~f~~~a~CPdC~q~LevLkACGAvdYFC~~chgL 90 (101)
T 2jne_A 33 LHCPQCQHVLDQDNGHARCRSCGEFIEMKALCPDCHQPLQVLKACGAVDYFCQHGHGL 90 (101)
T ss_dssp CBCSSSCSBEEEETTEEEETTTCCEEEEEEECTTTCSBCEEEEETTEEEEEETTTTEE
T ss_pred ccCccCCCcceecCCEEECccccchhhccccCcchhhHHHHHHHhcCcchhhccCCce
Confidence 45666665544444444455554321 133444444332 2357999887544
No 13
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=44.63 E-value=7.9 Score=29.01 Aligned_cols=25 Identities=28% Similarity=0.723 Sum_probs=16.8
Q ss_pred eeeEecCCCCC---CCcCCeeEEecCCC
Q 037283 67 TLVRVCDECNY---GSFQGRCVICGGVG 91 (136)
Q Consensus 67 ~~VrICdeCs~---G~~~~rCIiCg~~g 91 (136)
..+.+|..|+| +..-+.|.+||.|.
T Consensus 136 ~~~~~C~~CG~i~~~~~p~~CP~Cg~~~ 163 (170)
T 3pwf_A 136 KKVYICPICGYTAVDEAPEYCPVCGAPK 163 (170)
T ss_dssp SCEEECTTTCCEEESCCCSBCTTTCCBG
T ss_pred CCeeEeCCCCCeeCCCCCCCCCCCCCCH
Confidence 45677888877 33445888888653
No 14
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.33 E-value=5.9 Score=25.79 Aligned_cols=37 Identities=27% Similarity=0.534 Sum_probs=28.8
Q ss_pred EecCCCCCCCcCCeeEEecCCCccceeeehhhhhhhccCCCCcce
Q 037283 70 RVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKI 114 (136)
Q Consensus 70 rICdeCs~G~~~~rCIiCg~~g~sdAYYC~EC~~lEKDRDGCPrI 114 (136)
.+|..|+. ...-+|.-|+. .|...+|.+..|+. |..+
T Consensus 13 ~~C~vC~~-~~kY~CPrC~~-----~yCSl~C~k~Hk~~--C~~~ 49 (56)
T 2yqq_A 13 VVCVICLE-KPKYRCPACRV-----PYCSVVCFRKHKEQ--CNPE 49 (56)
T ss_dssp CCCTTTCS-CCSEECTTTCC-----EESSHHHHHHHHHH--CCCC
T ss_pred CccCcCcC-CCeeeCCCCCC-----CeeCHHHHHHHHhh--CcCC
Confidence 47999999 77889999975 44445799999987 7654
No 15
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=40.24 E-value=13 Score=23.38 Aligned_cols=19 Identities=32% Similarity=0.723 Sum_probs=9.6
Q ss_pred eeEEecCCCccceeeehhh
Q 037283 83 RCVICGGVGISDAYYCKEC 101 (136)
Q Consensus 83 rCIiCg~~g~sdAYYC~EC 101 (136)
.|-.|++.|....--|..|
T Consensus 52 ~C~~C~G~G~~~~~~C~~C 70 (79)
T 1exk_A 52 TCPHCQGRGTLIKDPCNKC 70 (79)
T ss_dssp ECTTTTTSSEECSSBCGGG
T ss_pred ECcCCCCccEECCCcCCCC
Confidence 4555655554433345544
No 16
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=39.70 E-value=11 Score=22.58 Aligned_cols=23 Identities=35% Similarity=0.777 Sum_probs=15.7
Q ss_pred ceecccC-CC--CCceeeEecCCCCC
Q 037283 55 KCVICDS-YV--RPCTLVRVCDECNY 77 (136)
Q Consensus 55 kCpICDS-~V--rp~~~VrICdeCs~ 77 (136)
+||.|.+ .+ .+.+-..||..|+.
T Consensus 7 ~CP~C~~~~l~~d~~~gelvC~~CG~ 32 (50)
T 1pft_A 7 VCPACESAELIYDPERGEIVCAKCGY 32 (50)
T ss_dssp SCTTTSCCCEEEETTTTEEEESSSCC
T ss_pred eCcCCCCcceEEcCCCCeEECcccCC
Confidence 5777766 33 35556688888876
No 17
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=36.08 E-value=3.5 Score=30.90 Aligned_cols=28 Identities=25% Similarity=0.653 Sum_probs=22.0
Q ss_pred CCceeeEecCCCCC-----------CCcCCeeEEecCCC
Q 037283 64 RPCTLVRVCDECNY-----------GSFQGRCVICGGVG 91 (136)
Q Consensus 64 rp~~~VrICdeCs~-----------G~~~~rCIiCg~~g 91 (136)
.|.-.|-+|..|.. ..++..|-+|+.-|
T Consensus 35 HPll~v~~C~~C~~~y~~~~~~~d~Dg~~d~C~vC~~GG 73 (142)
T 2lbm_A 35 HPSLQVLICKNCFKYYMSDDISRDSDGMDEQCRWCAEGG 73 (142)
T ss_dssp ETTTTEEEEHHHHHHHHHSCCCBCTTSCBCSCSSSCCCS
T ss_pred CCCccccccHHHHHHHhcCCceecCCCCCCeecccCCCC
Confidence 57778899999985 44577899998755
No 18
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=35.99 E-value=16 Score=23.78 Aligned_cols=53 Identities=21% Similarity=0.598 Sum_probs=31.2
Q ss_pred ceecccCCCCCceeeEecC--CCCCCCcCCeeEEecCC------CccceeeehhhhhhhccCCC
Q 037283 55 KCVICDSYVRPCTLVRVCD--ECNYGSFQGRCVICGGV------GISDAYYCKECTQQEKDRDG 110 (136)
Q Consensus 55 kCpICDS~Vrp~~~VrICd--eCs~G~~~~rCIiCg~~------g~sdAYYC~EC~~lEKDRDG 110 (136)
+| ||... .+...---|| .|.. -+...||.=... ...+.|||..|....++.-|
T Consensus 18 ~C-iC~~~-~~~g~MI~CD~~~C~~-W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~~~s~ 78 (78)
T 1wew_A 18 RC-VCGNS-LETDSMIQCEDPRCHV-WQHVGCVILPDKPMDGNPPLPESFYCEICRLTSGPSSG 78 (78)
T ss_dssp CC-SSCCC-CCCSCEEECSSTTTCC-EEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCSCCCC
T ss_pred Ee-ECCCc-CCCCCEEEECCccCCc-cccCEEEccccccccccccCCCCEECCCCCcccCCCCC
Confidence 44 45554 2334455677 7776 556666632221 23568999999877666543
No 19
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=35.79 E-value=18 Score=22.14 Aligned_cols=12 Identities=25% Similarity=0.564 Sum_probs=9.4
Q ss_pred CceecccCCCCC
Q 037283 54 GKCVICDSYVRP 65 (136)
Q Consensus 54 GkCpICDS~Vrp 65 (136)
.+|..|...|.|
T Consensus 16 ~~C~~C~~~I~~ 27 (77)
T 2egq_A 16 KKCAGCKNPITG 27 (77)
T ss_dssp CCCSSSCCCCCC
T ss_pred ccCcccCCcccC
Confidence 568888888886
No 20
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=34.44 E-value=11 Score=23.49 Aligned_cols=24 Identities=21% Similarity=0.645 Sum_probs=14.6
Q ss_pred eecccC--CCCCceeeEecCCCCCCC
Q 037283 56 CVICDS--YVRPCTLVRVCDECNYGS 79 (136)
Q Consensus 56 CpICDS--~Vrp~~~VrICdeCs~G~ 79 (136)
||-|.+ +..+......|..|+|-.
T Consensus 22 CP~CG~~~fm~~~~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 22 CPRCGPGVFMADHGDRWACGKCGYTE 47 (50)
T ss_dssp CSSSCSSCEEEECSSEEECSSSCCEE
T ss_pred CCCCCCceEEecCCCeEECCCCCCEE
Confidence 556666 445555666777776644
No 21
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=32.74 E-value=52 Score=21.96 Aligned_cols=53 Identities=26% Similarity=0.548 Sum_probs=37.3
Q ss_pred CCceecccCCCC-CceeeEecCCCCCCCcCCeeEEecCCCc--------cceeeehhhhhhhccCC
Q 037283 53 DGKCVICDSYVR-PCTLVRVCDECNYGSFQGRCVICGGVGI--------SDAYYCKECTQQEKDRD 109 (136)
Q Consensus 53 dGkCpICDS~Vr-p~~~VrICdeCs~G~~~~rCIiCg~~g~--------sdAYYC~EC~~lEKDRD 109 (136)
+-.|.+|...-. +....-+||.|..+--+. |=.|.. ....||..|....+.++
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~----Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~~~ 77 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQD----CHKPQVTDKEVNDPRLVWYCARCTRQMKRMA 77 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETT----TSSSCCCHHHHHCTTCCCCCHHHHHHHCCST
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCc----cCCCcccccccCCCCCCeeCccccchhhhhc
Confidence 456888886544 356788999999876555 655543 23689999988877553
No 22
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=30.54 E-value=33 Score=21.20 Aligned_cols=14 Identities=43% Similarity=0.861 Sum_probs=12.1
Q ss_pred CceeeEecCCCCCC
Q 037283 65 PCTLVRVCDECNYG 78 (136)
Q Consensus 65 p~~~VrICdeCs~G 78 (136)
|+|+-++|..|++.
T Consensus 33 ~mT~Fy~C~~Cg~~ 46 (50)
T 1tfi_A 33 PMTTFVVCNECGNR 46 (50)
T ss_dssp CCEEEEEESSSCCE
T ss_pred CceEEEEcCCCCCe
Confidence 89999999999863
No 23
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=30.26 E-value=7.2 Score=26.32 Aligned_cols=13 Identities=31% Similarity=0.838 Sum_probs=10.5
Q ss_pred CCceecccCCCCC
Q 037283 53 DGKCVICDSYVRP 65 (136)
Q Consensus 53 dGkCpICDS~Vrp 65 (136)
.|.||.|+|.+.|
T Consensus 47 g~~CPvCgs~l~~ 59 (112)
T 1l8d_A 47 KGKCPVCGRELTD 59 (112)
T ss_dssp SEECTTTCCEECH
T ss_pred CCCCCCCCCcCCH
Confidence 4569999998776
No 24
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=29.18 E-value=16 Score=24.95 Aligned_cols=34 Identities=26% Similarity=0.623 Sum_probs=19.2
Q ss_pred eeEecCCCCCCCcCCeeEEecCCCccceeeehhhh
Q 037283 68 LVRVCDECNYGSFQGRCVICGGVGISDAYYCKECT 102 (136)
Q Consensus 68 ~VrICdeCs~G~~~~rCIiCg~~g~sdAYYC~EC~ 102 (136)
..-.||.|.-. +-..|+.=....+.+.|+|..|.
T Consensus 41 ~mi~Cd~C~~w-~H~~C~~~~~~~~p~~w~C~~C~ 74 (98)
T 2lv9_A 41 YMICCDKCSVW-QHIDCMGIDRQHIPDTYLCERCQ 74 (98)
T ss_dssp CEEEBTTTCBE-EETTTTTCCTTSCCSSBCCTTTS
T ss_pred cEEEcCCCCCc-CcCcCCCCCccCCCCCEECCCCc
Confidence 34567777643 33445422222344679999994
No 25
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=27.61 E-value=18 Score=20.01 Aligned_cols=17 Identities=29% Similarity=0.581 Sum_probs=13.7
Q ss_pred CceecccCCCCCceeeE
Q 037283 54 GKCVICDSYVRPCTLVR 70 (136)
Q Consensus 54 GkCpICDS~Vrp~~~Vr 70 (136)
.+|+.|...|-|..++-
T Consensus 4 ~~C~~C~k~Vy~~Ek~~ 20 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVN 20 (31)
T ss_dssp CBCSSSCSBCCGGGCCC
T ss_pred CcCCccCCEEecceeEE
Confidence 58999999999876653
No 26
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=27.39 E-value=21 Score=21.20 Aligned_cols=16 Identities=19% Similarity=0.515 Sum_probs=10.9
Q ss_pred CceecccCCCCCceee
Q 037283 54 GKCVICDSYVRPCTLV 69 (136)
Q Consensus 54 GkCpICDS~Vrp~~~V 69 (136)
.+|..|...|.+...+
T Consensus 12 ~~C~~C~~~i~~~e~~ 27 (72)
T 3f6q_B 12 ATCERCKGGFAPAEKI 27 (72)
T ss_dssp CBCTTTCCBCCTTCEE
T ss_pred ccchhcCccccCCceE
Confidence 4677788888776543
No 27
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=26.74 E-value=82 Score=19.24 Aligned_cols=51 Identities=25% Similarity=0.651 Sum_probs=33.0
Q ss_pred CCceecccCC-CCCceeeEecCCCCCCCcCCeeEEecCCCc-------cceeeehhhhhhhcc
Q 037283 53 DGKCVICDSY-VRPCTLVRVCDECNYGSFQGRCVICGGVGI-------SDAYYCKECTQQEKD 107 (136)
Q Consensus 53 dGkCpICDS~-Vrp~~~VrICdeCs~G~~~~rCIiCg~~g~-------sdAYYC~EC~~lEKD 107 (136)
+-.|.+|... .......-+||.|.-+--+. |=+|.. ....||..|.....-
T Consensus 6 ~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~----C~~p~l~~~~~~p~~~W~C~~C~~~~~~ 64 (66)
T 2yt5_A 6 SGVCTICQEEYSEAPNEMVICDKCGQGYHQL----CHTPHIDSSVIDSDEKWLCRQCVFATTT 64 (66)
T ss_dssp CCCBSSSCCCCCBTTBCEEECSSSCCEEETT----TSSSCCCHHHHHSSCCCCCHHHHHTTSC
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCChHHHhh----hCCCcccccccCCCCCEECCCCcCcccc
Confidence 4568888764 23457788999998764333 434321 247999999765543
No 28
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=26.18 E-value=33 Score=23.92 Aligned_cols=32 Identities=25% Similarity=0.673 Sum_probs=22.7
Q ss_pred ceecccCCCCCce------eeEecCCCCCCCcCC-eeEE
Q 037283 55 KCVICDSYVRPCT------LVRVCDECNYGSFQG-RCVI 86 (136)
Q Consensus 55 kCpICDS~Vrp~~------~VrICdeCs~G~~~~-rCIi 86 (136)
-||-|.+.+.|.. +...|..|.|....+ .||.
T Consensus 6 FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y~~~~~~~~v~ 44 (113)
T 3h0g_I 6 YCIECNNMLYPREDKVDRVLRLACRNCDYSEIAATSKVY 44 (113)
T ss_dssp CCSSSCCCCEECCCTTTCCCCEECSSSCCEECCSCSEEE
T ss_pred eCcCCCCEeeEcccCCCCeeEEECCCCCCeEEcCCCeEE
Confidence 4889999876643 378999999876543 3554
No 29
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=26.18 E-value=15 Score=24.85 Aligned_cols=18 Identities=39% Similarity=0.875 Sum_probs=9.6
Q ss_pred eEEecCCCccceeeehhh
Q 037283 84 CVICGGVGISDAYYCKEC 101 (136)
Q Consensus 84 CIiCg~~g~sdAYYC~EC 101 (136)
|-+|+..+..-.|+|.+|
T Consensus 50 C~~C~~~~~~~~Y~C~~C 67 (89)
T 1v5n_A 50 CDKCEEEGTIWSYHCDEC 67 (89)
T ss_dssp CTTTSCCCCSCEEECTTT
T ss_pred eCCCCCcCCCcEEEcCCC
Confidence 444554444446666655
No 30
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.96 E-value=31 Score=21.37 Aligned_cols=13 Identities=15% Similarity=0.508 Sum_probs=9.2
Q ss_pred CceecccCCCCCc
Q 037283 54 GKCVICDSYVRPC 66 (136)
Q Consensus 54 GkCpICDS~Vrp~ 66 (136)
.+|..|...|.|.
T Consensus 16 ~~C~~C~~~I~~~ 28 (82)
T 2ehe_A 16 NTCAECQQLIGHD 28 (82)
T ss_dssp CBCTTTCCBCCSS
T ss_pred CcCccCCCccccC
Confidence 3678888877763
No 31
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.44 E-value=38 Score=20.28 Aligned_cols=13 Identities=23% Similarity=0.611 Sum_probs=10.3
Q ss_pred CceecccCCCCCc
Q 037283 54 GKCVICDSYVRPC 66 (136)
Q Consensus 54 GkCpICDS~Vrp~ 66 (136)
.+|..|...|.|.
T Consensus 6 ~~C~~C~~~I~~~ 18 (72)
T 1x4k_A 6 SGCQECKKTIMPG 18 (72)
T ss_dssp CCBSSSCCCCCSS
T ss_pred CCCccCCCcccCC
Confidence 4788888888875
No 32
>3u5c_d S36, YS29, 40S ribosomal protein S29-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_N 3o30_S 3o2z_S 3u5g_d 3jyv_N* 1s1h_N
Probab=24.04 E-value=26 Score=22.80 Aligned_cols=28 Identities=21% Similarity=0.586 Sum_probs=19.9
Q ss_pred CCCCcCCeeEEecCCCc----cceeeehhhhh
Q 037283 76 NYGSFQGRCVICGGVGI----SDAYYCKECTQ 103 (136)
Q Consensus 76 s~G~~~~rCIiCg~~g~----sdAYYC~EC~~ 103 (136)
.||....+|.+||.+.. ..-+.|+.|-+
T Consensus 13 ~~G~gs~rC~vcGr~~g~iRkfGl~lcR~cfR 44 (56)
T 3u5c_d 13 RYGKGSRQCRVCSSHTGLIRKYGLNICRQCFR 44 (56)
T ss_dssp SSSGGGCCCTTTCCCSSEECGGGCCEEHHHHH
T ss_pred ccCCCcceeecCCCCcccccccCcchhHHHHH
Confidence 47888999999998653 23445777644
No 33
>3j20_P 30S ribosomal protein S14P type Z; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.51 E-value=33 Score=22.31 Aligned_cols=28 Identities=29% Similarity=0.802 Sum_probs=20.0
Q ss_pred CCCCcCCeeEEecCCCc----cceeeehhhhh
Q 037283 76 NYGSFQGRCVICGGVGI----SDAYYCKECTQ 103 (136)
Q Consensus 76 s~G~~~~rCIiCg~~g~----sdAYYC~EC~~ 103 (136)
.||....+|.+||.|.. ..-+.|+.|-+
T Consensus 13 ~~grg~~rC~vcGr~~g~iRkfGL~~cR~cfR 44 (56)
T 3j20_P 13 KFGKGARRCIRCGQYGPIIRIQGLMLCRHCFR 44 (56)
T ss_dssp SSSSTTCCCSSSCCSSSCCCTTTCCCCHHHHH
T ss_pred ccCCCceEeecCCCCcccccccCChHHHHHHH
Confidence 48888999999998653 33555777643
No 34
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=23.40 E-value=13 Score=27.97 Aligned_cols=24 Identities=21% Similarity=0.480 Sum_probs=14.8
Q ss_pred eeeEecCCCCCCC----cCCeeEEecCC
Q 037283 67 TLVRVCDECNYGS----FQGRCVICGGV 90 (136)
Q Consensus 67 ~~VrICdeCs~G~----~~~rCIiCg~~ 90 (136)
..+.+|..|+|-. .-+.|.+||.|
T Consensus 153 ~~~~~C~~CG~~~~g~~~p~~CP~C~~~ 180 (191)
T 1lko_A 153 ATKWRCRNCGYVHEGTGAPELCPACAHP 180 (191)
T ss_dssp EEEEEETTTCCEEEEEECCSBCTTTCCB
T ss_pred CceEEECCCCCEeeCCCCCCCCCCCcCC
Confidence 3466777777642 23478888764
No 35
>3iz6_N 40S ribosomal protein S29 (S14P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_n
Probab=23.19 E-value=23 Score=22.96 Aligned_cols=28 Identities=29% Similarity=0.697 Sum_probs=19.9
Q ss_pred CCCCcCCeeEEecCCCc----cceeeehhhhh
Q 037283 76 NYGSFQGRCVICGGVGI----SDAYYCKECTQ 103 (136)
Q Consensus 76 s~G~~~~rCIiCg~~g~----sdAYYC~EC~~ 103 (136)
.||....+|.+||.|.. ..-+.|+.|-+
T Consensus 13 ~~G~g~~rC~vcGr~~g~iRkfGL~~cR~cfR 44 (56)
T 3iz6_N 13 NYGAGSRVCRVCGNSHGLIRKYGLMCCRQCFR 44 (56)
T ss_dssp CCCCCCCCCSSCCCSCCCTTTTSCTTHHHHHH
T ss_pred ccCCCcceeecCCCCcccccccCCcHHHHHHH
Confidence 48899999999998653 33445776643
No 36
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.39 E-value=72 Score=20.99 Aligned_cols=64 Identities=28% Similarity=0.695 Sum_probs=38.5
Q ss_pred CcceeeeccCCCcccccccccCCCceecccCCCCCceeeEecCCCCCCCcCCeeEEecCCCc-cc-eeeehhhh
Q 037283 31 WTSSLLCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGI-SD-AYYCKECT 102 (136)
Q Consensus 31 ~~DLi~C~KqpG~~iG~lC~kCdGkCpICDS~Vrp~~~VrICdeCs~G~~~~rCIiCg~~g~-sd-AYYC~EC~ 102 (136)
++....|++.+ ...|..| .|.+|...-.+.. .-+||.|.-+ +--.|+.=-...+ .. ..||..|.
T Consensus 10 ~~~c~~C~~~~----~w~C~~c--~C~vC~~~~~~~~-ll~CD~C~~~-yH~~Cl~Ppl~~~P~g~~W~C~~C~ 75 (77)
T 2e6s_A 10 DTECDLCGGDP----EKKCHSC--SCRVCGGKHEPNM-QLLCDECNVA-YHIYCLNPPLDKVPEEEYWYCPSCK 75 (77)
T ss_dssp CCCCTTTCSCS----SSCCSSS--SCSSSCCCCCSTT-EEECSSSCCE-EETTSSSSCCSSCCCSSCCCCTTTC
T ss_pred CccChhhcCCC----CeECCCC--CCcCcCCcCCCCC-EEEcCCCCcc-ccccccCCCccCCCCCCCcCCcCcc
Confidence 66677787765 3567777 8999987654444 4589999854 3344442001111 22 57787774
No 37
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=22.17 E-value=17 Score=29.46 Aligned_cols=34 Identities=18% Similarity=0.355 Sum_probs=27.7
Q ss_pred ceeeEecCCCCCCCcCCeeEEecCCCccceeeeh
Q 037283 66 CTLVRVCDECNYGSFQGRCVICGGVGISDAYYCK 99 (136)
Q Consensus 66 ~~~VrICdeCs~G~~~~rCIiCg~~g~sdAYYC~ 99 (136)
...|+.|..|+.=+..+.|-||..+.....-.|-
T Consensus 51 ~~~i~~C~~C~nlte~~~C~IC~d~~Rd~~~iCV 84 (228)
T 1vdd_A 51 KRDLHVCPICFNITDAEKCDVCADPSRDQRTICV 84 (228)
T ss_dssp HHHCEECSSSCCEESSSSCHHHHCSSSCTTEEEE
T ss_pred HhcCeEcCCCCCCcCCCcCCCCCCCCcCCCeEEE
Confidence 4578999999988889999999988776656663
No 38
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=21.99 E-value=34 Score=21.56 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=13.0
Q ss_pred ceecccCC---CCCceeeEecCCCCC
Q 037283 55 KCVICDSY---VRPCTLVRVCDECNY 77 (136)
Q Consensus 55 kCpICDS~---Vrp~~~VrICdeCs~ 77 (136)
+||.|.+. ..+.+-..||.+|+.
T Consensus 13 ~Cp~C~~~~lv~D~~~ge~vC~~CGl 38 (58)
T 1dl6_A 13 TCPNHPDAILVEDYRAGDMICPECGL 38 (58)
T ss_dssp SBTTBSSSCCEECSSSCCEECTTTCC
T ss_pred cCcCCCCCceeEeCCCCeEEeCCCCC
Confidence 56777551 133455567777754
No 39
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=21.59 E-value=50 Score=20.14 Aligned_cols=15 Identities=27% Similarity=0.696 Sum_probs=11.5
Q ss_pred CCceeeEecCCCCCC
Q 037283 64 RPCTLVRVCDECNYG 78 (136)
Q Consensus 64 rp~~~VrICdeCs~G 78 (136)
.|+|..+.|..|++.
T Consensus 38 ep~T~fy~C~~Cg~~ 52 (57)
T 1qyp_A 38 EPSTIFYKCTKCGHT 52 (57)
T ss_dssp CSSEEEEEESSSCCE
T ss_pred CCCcEEEEcCCCCCE
Confidence 378888888888764
No 40
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=21.37 E-value=29 Score=23.26 Aligned_cols=15 Identities=20% Similarity=0.733 Sum_probs=10.7
Q ss_pred ceeeehhhhhhhccC
Q 037283 94 DAYYCKECTQQEKDR 108 (136)
Q Consensus 94 dAYYC~EC~~lEKDR 108 (136)
.+|+|.+|.....|.
T Consensus 35 ~~~~C~~CGE~~~d~ 49 (133)
T 3o9x_A 35 HGLYCVHCEESIMNK 49 (133)
T ss_dssp EEEEESSSSCEECCH
T ss_pred ceeECCCCCCEeecH
Confidence 588888887665553
No 41
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=20.73 E-value=57 Score=20.97 Aligned_cols=52 Identities=35% Similarity=0.850 Sum_probs=30.6
Q ss_pred cccccCCCceecccCCCCCceeeEecCCCCCCCcCCeeEEecCCCc-cc-eeeehhhh
Q 037283 47 RLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGI-SD-AYYCKECT 102 (136)
Q Consensus 47 ~lC~kCdGkCpICDS~Vrp~~~VrICdeCs~G~~~~rCIiCg~~g~-sd-AYYC~EC~ 102 (136)
..|..| .|.+|...-.+. ..-+||.|.- .+--.|+.=-...+ .. ..+|..|.
T Consensus 14 w~C~~C--~C~~C~~~~~~~-~ll~CD~C~~-~yH~~Cl~Ppl~~~P~g~~W~C~~C~ 67 (70)
T 3asl_A 14 RLCRVC--ACHLCGGRQDPD-KQLMCDECDM-AFHIYCLDPPLSSVPSEDEWYCPECR 67 (70)
T ss_dssp SCCTTT--SBTTTCCCSCGG-GEEECTTTCC-EEEGGGSSSCCSSCCSSSCCCCTTTS
T ss_pred eECCCC--CCcCCCCcCCCC-CEEEcCCCCC-ceecccCCCCcCCCCCCCCcCCcCcc
Confidence 567778 788998765444 4458999984 34445542001111 22 67787774
No 42
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=20.52 E-value=26 Score=23.67 Aligned_cols=16 Identities=31% Similarity=0.872 Sum_probs=11.6
Q ss_pred eehhhhhhhccCCCCcc
Q 037283 97 YCKECTQQEKDRDGCPK 113 (136)
Q Consensus 97 YC~EC~~lEKDRDGCPr 113 (136)
-|++|-.+- +.+|||.
T Consensus 13 AC~~C~~~~-~~~~CPn 28 (69)
T 1ryq_A 13 ACRHCHYIT-SEDRCPV 28 (69)
T ss_dssp EETTTCBEE-SSSSCTT
T ss_pred hHHhCCccc-cCCcCCC
Confidence 466776666 8889995
No 43
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=20.34 E-value=87 Score=20.95 Aligned_cols=30 Identities=30% Similarity=0.698 Sum_probs=17.5
Q ss_pred ecCCCCCCCcCCeeEEecCCCccceeeehhhhhh
Q 037283 71 VCDECNYGSFQGRCVICGGVGISDAYYCKECTQQ 104 (136)
Q Consensus 71 ICdeCs~G~~~~rCIiCg~~g~sdAYYC~EC~~l 104 (136)
.|..|+-...+-+=+|=| | .+|-|.||+.+
T Consensus 20 ~CSFCGK~e~eV~~LIaG-p---gvyICdeCI~~ 49 (67)
T 1ovx_A 20 YCSFCGKSQHEVRKLIAG-P---SVYICDECVDL 49 (67)
T ss_dssp CCTTTCCCTTTSSSEEEC-S---SCEEEHHHHHH
T ss_pred EecCCCCCHHHHcccCCC-C---CCChhHHHHHH
Confidence 355555544444444433 2 48999999754
No 44
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=20.09 E-value=21 Score=28.61 Aligned_cols=34 Identities=21% Similarity=0.372 Sum_probs=28.6
Q ss_pred ceeeEecCCCCCCCcCCeeEEecCCCccceeeeh
Q 037283 66 CTLVRVCDECNYGSFQGRCVICGGVGISDAYYCK 99 (136)
Q Consensus 66 ~~~VrICdeCs~G~~~~rCIiCg~~g~sdAYYC~ 99 (136)
...|+.|..|+.=+..+-|-||..+.....-.|-
T Consensus 65 ~~~i~~C~~C~nlte~~~C~IC~d~~Rd~~~iCV 98 (212)
T 3vdp_A 65 KEKLRYCKICFNITDKEVCDICSDENRDHSTICV 98 (212)
T ss_dssp HHHCEECTTTCCEESSSSCHHHHCTTSEEEEEEE
T ss_pred HHhCCcCCCCCCCCCCCcCCCCCCCCCCCCEEEE
Confidence 4578999999998888999999998877777774
No 45
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=20.06 E-value=22 Score=24.32 Aligned_cols=24 Identities=29% Similarity=0.596 Sum_probs=18.5
Q ss_pred ceecccCC--CCCceeeEecCCCCCC
Q 037283 55 KCVICDSY--VRPCTLVRVCDECNYG 78 (136)
Q Consensus 55 kCpICDS~--Vrp~~~VrICdeCs~G 78 (136)
.||.|+.. -||.+-.-.|+.|.+.
T Consensus 29 ~Cp~CG~~~v~r~atGiW~C~~Cg~~ 54 (83)
T 1vq8_Z 29 ACPNCGEDRVDRQGTGIWQCSYCDYK 54 (83)
T ss_dssp ECSSSCCEEEEEEETTEEEETTTCCE
T ss_pred cCCCCCCcceeccCCCeEECCCCCCE
Confidence 67888774 3678888899999874
Done!