BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>037286
LTGIANTKSWFQFYGDGFSIRVPPQFEDISEPEDYNAGLSLYGDKAKPKTFAARFATPDG
SEVLSVVIRPSNQLKITFLEAQDITDFGTLKDAAKIFVPGGATLYSARTIKIKEEEGFKS
YYFYEFGRDEQHVALVAAINSGKRHLDAPMCPSLNRRLLSGWLIHSVVGISLINVSELYL
ATELSQIKIMKVMFHSCLNLMNYYSISYIMPFFLSYCRHISLEQLLQSPSGMMMV

High Scoring Gene Products

Symbol, full name Information P value
AT5G27390 protein from Arabidopsis thaliana 9.0e-61

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  037286
        (235 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2146420 - symbol:AT5G27390 species:3702 "Arabi...   622  9.0e-61   1


>TAIR|locus:2146420 [details] [associations]
            symbol:AT5G27390 species:3702 "Arabidopsis thaliana"
            [GO:0005509 "calcium ion binding" evidence=IEA] [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0009523 "photosystem II"
            evidence=IEA] [GO:0009654 "oxygen evolving complex" evidence=IEA]
            [GO:0015979 "photosynthesis" evidence=IEA] [GO:0019898 "extrinsic
            to membrane" evidence=IEA] [GO:0009220 "pyrimidine ribonucleotide
            biosynthetic process" evidence=RCA] InterPro:IPR002683 Pfam:PF01789
            EMBL:CP002688 GO:GO:0009507 GO:GO:0019898 GO:GO:0005509
            GO:GO:0015979 Gene3D:3.40.1000.10 InterPro:IPR016123
            SUPFAM:SSF55724 GO:GO:0009654 IPI:IPI00546877 RefSeq:NP_198091.2
            UniGene:At.70201 ProteinModelPortal:F4K4A6 SMR:F4K4A6 PRIDE:F4K4A6
            EnsemblPlants:AT5G27390.1 GeneID:832798 KEGG:ath:AT5G27390
            OMA:GIANTKS Uniprot:F4K4A6
        Length = 241

 Score = 622 (224.0 bits), Expect = 9.0e-61, P = 9.0e-61
 Identities = 113/150 (75%), Positives = 135/150 (90%)

Query:     3 GIANTKSWFQFYGDGFSIRVPPQFEDISEPEDYNAGLSLYGDKAKPKTFAARFATPDGSE 62
             GIANTKSWFQ++G GF+IRVPP FED++EPEDY+AGLSLYGDKAKP+TFAARF TPDGSE
Sbjct:    71 GIANTKSWFQYFGSGFAIRVPPDFEDVNEPEDYSAGLSLYGDKAKPQTFAARFQTPDGSE 130

Query:    63 VLSVVIRPSNQLKITFLEAQDITDFGTLKDAAKIFVPGGATLYSARTIKIKEEEGFKSYY 122
             VLSVVIRPSNQLKITFLEA+DI+D G+LK AA++FVPG AT+YSARTIK+KEEEG ++YY
Sbjct:   131 VLSVVIRPSNQLKITFLEAKDISDLGSLKAAARLFVPGAATIYSARTIKVKEEEGLRNYY 190

Query:   123 FYEFGRDEQHVALVAAINSGKRHLDAPMCP 152
             FYEFGRDE+ +ALVA++N GK ++     P
Sbjct:   191 FYEFGRDEERIALVASVNRGKVYIAGAAAP 220


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.137   0.406    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      235       235   0.00088  113 3  11 22  0.38    33
                                                     32  0.43    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  602 (64 KB)
  Total size of DFA:  179 KB (2104 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.24u 0.10s 19.34t   Elapsed:  00:00:02
  Total cpu time:  19.24u 0.10s 19.34t   Elapsed:  00:00:02
  Start:  Sat May 11 07:23:43 2013   End:  Sat May 11 07:23:45 2013

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