BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037286
         (235 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3T2N|A Chain A, Human Hepsin Protease In Complex With The Fab Fragment Of
           An Inhibitory Antibody
 pdb|3T2N|B Chain B, Human Hepsin Protease In Complex With The Fab Fragment Of
           An Inhibitory Antibody
          Length = 372

 Score = 29.3 bits (64), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 8/61 (13%)

Query: 1   LTGIANTKSWFQFYGDGFSIRVPPQFEDISEPEDYNAGLSLYGDKAKPKTFAARFATPDG 60
           +TG  NT+ + Q  G     RVP    D+    D+      YG++ KPK F A +  P+G
Sbjct: 248 VTGWGNTQYYGQQAGVLQEARVPIISNDVCNGADF------YGNQIKPKMFCAGY--PEG 299

Query: 61  S 61
            
Sbjct: 300 G 300


>pdb|1Z8G|A Chain A, Crystal Structure Of The Extracellular Region Of The
           Transmembrane Serine Protease Hepsin With Covalently
           Bound Preferred Substrate
          Length = 372

 Score = 29.3 bits (64), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 8/61 (13%)

Query: 1   LTGIANTKSWFQFYGDGFSIRVPPQFEDISEPEDYNAGLSLYGDKAKPKTFAARFATPDG 60
           +TG  NT+ + Q  G     RVP    D+    D+      YG++ KPK F A +  P+G
Sbjct: 248 VTGWGNTQYYGQQAGVLQEARVPIISNDVCNGADF------YGNQIKPKMFCAGY--PEG 299

Query: 61  S 61
            
Sbjct: 300 G 300


>pdb|1O5E|H Chain H, Dissecting And Designing Inhibitor Selectivity
           Determinants At The S1 Site Using An Artificial Ala190
           Protease (ala190 Upa)
 pdb|1O5F|H Chain H, Dissecting And Designing Inhibitor Selectivity
           Determinants At The S1 Site Using An Artificial Ala190
           Protease (Ala190 Upa)
 pdb|1P57|B Chain B, Extracellular Domain Of Human Hepsin
          Length = 255

 Score = 28.9 bits (63), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 8/61 (13%)

Query: 1   LTGIANTKSWFQFYGDGFSIRVPPQFEDISEPEDYNAGLSLYGDKAKPKTFAARFATPDG 60
           +TG  NT+ + Q  G     RVP    D+    D+      YG++ KPK F A +  P+G
Sbjct: 131 VTGWGNTQYYGQQAGVLQEARVPIISNDVCNGADF------YGNQIKPKMFCAGY--PEG 182

Query: 61  S 61
            
Sbjct: 183 G 183


>pdb|2I3O|A Chain A, Crystal Structure Of Gamma-Glutamyl Transferase Related
           Protein From Thermoplasma Acidophilum
 pdb|2I3O|B Chain B, Crystal Structure Of Gamma-Glutamyl Transferase Related
           Protein From Thermoplasma Acidophilum
 pdb|2I3O|C Chain C, Crystal Structure Of Gamma-Glutamyl Transferase Related
           Protein From Thermoplasma Acidophilum
 pdb|2I3O|D Chain D, Crystal Structure Of Gamma-Glutamyl Transferase Related
           Protein From Thermoplasma Acidophilum
          Length = 516

 Score = 26.9 bits (58), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 20/86 (23%)

Query: 54  RFATPDGSEVLSVVIRPSNQLKITFLEAQDITD--------FGTLKDAAKIFVPGGATLY 105
           +FAT D +++L   IR ++     F   Q+ +D         G  +  + IF P G+   
Sbjct: 122 KFATXDIADILEPAIRTASA---GFPITQNYSDSIARSAPVIGQYRGWSSIFXPNGSVPV 178

Query: 106 S---------ARTIKIKEEEGFKSYY 122
           +         A + ++  EEGF+S+Y
Sbjct: 179 AGEILKQPDLAESFRLXSEEGFRSFY 204


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.137    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,924,750
Number of Sequences: 62578
Number of extensions: 273413
Number of successful extensions: 554
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 554
Number of HSP's gapped (non-prelim): 9
length of query: 235
length of database: 14,973,337
effective HSP length: 96
effective length of query: 139
effective length of database: 8,965,849
effective search space: 1246253011
effective search space used: 1246253011
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)