BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037286
         (235 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9PDU1|PYRG_XYLFA CTP synthase OS=Xylella fastidiosa (strain 9a5c) GN=pyrG PE=3 SV=1
          Length = 554

 Score = 33.5 bits (75), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 2/36 (5%)

Query: 68  IRPSNQLKITFLEAQDI--TDFGTLKDAAKIFVPGG 101
           +R   ++ + ++EAQD+  +D G LKD   I VPGG
Sbjct: 318 LRQRTKVNLKWVEAQDLEGSDMGALKDIDGILVPGG 353


>sp|Q9BSG5|RTBDN_HUMAN Retbindin OS=Homo sapiens GN=RTBDN PE=2 SV=2
          Length = 229

 Score = 32.0 bits (71), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 13/26 (50%), Positives = 15/26 (57%)

Query: 128 RDEQHVALVAAINSGKRHLDAPMCPS 153
           R +QH  L A +  GK HL  P CPS
Sbjct: 37  RSQQHHGLAADLGKGKLHLAGPCCPS 62


>sp|Q6B8W6|RR8_GRATL 30S ribosomal protein S8, chloroplastic OS=Gracilaria
           tenuistipitata var. liui GN=rps8 PE=3 SV=1
          Length = 132

 Score = 30.8 bits (68), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 102 ATLYSARTIKIKEEEGFKSYYFYEFGRDEQHVALVAAINSGKRHLDAPMCPSLNR 156
           +T  +   IK+ +EEGF  Y F E G D     L++    GKR    P+  SL R
Sbjct: 28  STKMTRNIIKVLQEEGF-IYKFEEIGEDNNKYLLISLKYKGKR--KKPVITSLKR 79


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.137    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,472,322
Number of Sequences: 539616
Number of extensions: 3438896
Number of successful extensions: 7379
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 7378
Number of HSP's gapped (non-prelim): 5
length of query: 235
length of database: 191,569,459
effective HSP length: 114
effective length of query: 121
effective length of database: 130,053,235
effective search space: 15736441435
effective search space used: 15736441435
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)