Query 037286
Match_columns 235
No_of_seqs 84 out of 86
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 10:42:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037286.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037286hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03152 hypothetical protein; 100.0 4.9E-66 1.1E-70 454.8 10.7 167 1-168 69-235 (241)
2 PLN00042 photosystem II oxygen 100.0 3.2E-41 6.9E-46 301.3 10.1 141 2-167 84-253 (260)
3 PLN00067 PsbP domain-containin 100.0 1.6E-31 3.4E-36 239.5 9.7 142 16-168 105-258 (263)
4 PF01789 PsbP: PsbP; InterPro 100.0 2.6E-30 5.6E-35 212.6 8.5 133 4-163 17-165 (175)
5 PLN00059 PsbP domain-containin 99.9 1.4E-27 3.1E-32 215.5 9.9 137 7-168 106-279 (286)
6 PLN00066 PsbP domain-containin 99.9 1.9E-27 4.1E-32 213.0 10.5 133 16-167 113-252 (262)
7 KOG4599 Putative mitochondrial 97.2 0.00013 2.8E-09 69.4 1.9 69 5-87 50-118 (379)
8 PF08786 DUF1795: Domain of un 86.6 4.6 0.0001 31.5 7.6 69 88-160 41-120 (130)
9 smart00564 PQQ beta-propeller 73.6 4.3 9.4E-05 24.3 2.7 23 135-157 9-31 (33)
10 PF10738 Lpp-LpqN: Probable li 69.1 44 0.00095 28.9 8.8 56 17-95 32-87 (175)
11 PF01344 Kelch_1: Kelch motif; 55.9 12 0.00026 23.8 2.4 18 135-152 5-22 (47)
12 PF04502 DUF572: Family of unk 48.1 14 0.0003 34.3 2.4 32 18-58 7-39 (324)
13 PF01011 PQQ: PQQ enzyme repea 46.8 20 0.00044 22.8 2.3 24 136-159 4-27 (38)
14 KOG0137 Very-long-chain acyl-C 46.2 48 0.001 34.5 6.0 74 18-110 124-198 (634)
15 PF13964 Kelch_6: Kelch motif 35.3 40 0.00086 22.0 2.4 18 136-153 6-23 (50)
16 PF08006 DUF1700: Protein of u 30.3 15 0.00032 30.6 -0.4 17 81-97 44-60 (181)
17 COG2101 SPT15 TATA-box binding 29.2 35 0.00077 30.6 1.8 29 27-58 127-155 (185)
18 PF09211 DUF1958: Domain of un 28.6 1.4E+02 0.003 22.7 4.6 40 103-147 3-46 (65)
19 smart00456 WW Domain with 2 co 27.7 48 0.001 20.0 1.7 20 140-159 11-30 (32)
20 PF11182 AlgF: Alginate O-acet 24.0 2.9E+02 0.0064 24.4 6.5 53 39-102 17-69 (181)
21 PF07009 DUF1312: Protein of u 22.7 2E+02 0.0042 22.7 4.7 39 117-155 34-81 (113)
22 COG2461 Uncharacterized conser 22.5 70 0.0015 31.8 2.6 40 16-55 226-265 (409)
23 cd00201 WW Two conserved trypt 21.8 1.1E+02 0.0024 18.0 2.5 20 140-159 10-29 (31)
24 COG5242 TFB4 RNA polymerase II 21.6 89 0.0019 29.5 3.0 135 59-228 18-153 (296)
25 COG3212 Predicted membrane pro 21.1 4E+02 0.0086 22.5 6.5 51 89-144 84-137 (144)
26 COG5435 Uncharacterized conser 20.3 5.8E+02 0.013 22.2 8.7 105 19-153 10-122 (147)
27 KOG0453 Aconitase/homoaconitas 20.1 1E+02 0.0022 32.8 3.2 46 14-73 515-560 (778)
No 1
>PLN03152 hypothetical protein; Provisional
Probab=100.00 E-value=4.9e-66 Score=454.81 Aligned_cols=167 Identities=78% Similarity=1.204 Sum_probs=163.2
Q ss_pred CCccccccceeeeecCceeEecCCCCCCCCCCccCCCcccccCCCCCCcceeeeecCCCCceEEEEEEEeCCcccccccc
Q 037286 1 LTGIANTKSWFQFYGDGFSIRVPPQFEDISEPEDYNAGLSLYGDKAKPKTFAARFATPDGSEVLSVVIRPSNQLKITFLE 80 (235)
Q Consensus 1 ~~~~~Ntt~w~~y~GdGF~i~vP~kwn~skE~e~f~~~~~~Y~D~akp~~~~aRF~~~Dg~eNVSVvV~Pt~qlK~tFle 80 (235)
|+||+||++|+||+||||+|+|||.|+|++|||||++|+++|||+|||+||+|||+++||+|||||+|+|++|||||||+
T Consensus 69 ~~~~~nt~~w~~~~g~gf~~~~pp~f~di~e~~~~~~g~~~yg~~akp~~~~aRf~s~D~sEnVSVVIspv~~LK~tfle 148 (241)
T PLN03152 69 LSGIANTKSWFQFYGDGFSIRVPPSFEDIMEPEDYNAGLSLYGDKAKPRTFAARFASPDGSEVLSVVIRPSNQLKITFLE 148 (241)
T ss_pred heeeecchhhhhhhCCceEEeCCCChhhhcChhhcccccceecCCCCCcceeeeecCCCCCceEEEEEecCccccccccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcccCCCHHHHHhhhccCCceEEeeeeeeeeeccCCeeeEEEEEEeCceEEEEEEEEeCCeEEEEccCCCCcchhhcc
Q 037286 81 AQDITDFGTLKDAAKIFVPGGATLYSARTIKIKEEEGFKSYYFYEFGRDEQHVALVAAINSGKRHLDAPMCPSLNRRLLS 160 (235)
Q Consensus 81 kKsItdfGSPeEva~l~vp~Gakl~sAs~lev~~~~ggKtYY~yEfl~ggrH~LitAaV~~GKLYtl~AqApekRW~k~k 160 (235)
+|||+|||+|+|||++++|+|+++++|+.++++.+.+||+||+|||.+++||+|++|||++||||||+|+++|+||+|++
T Consensus 149 ~kDLtDLGsp~EVgkv~vP~g~~~~saR~iel~~E~dGKtYY~lEy~v~~RH~LaTVaVsrGKLYTl~aSt~EkRW~Kvk 228 (241)
T PLN03152 149 AKDITDLGSLKEAAKIFVPGGATLYSARTIKVKEEEGIRTYYFYEFGRDEQHVALVATVNSGKAYIAGATAPESKWDDDG 228 (241)
T ss_pred cCChhHcCCHHHHHHhhCCCcccccccceeeeeeecCCceeEEEEEEeCCcEEEEEEEEcCCeEEEEecCCchhchHHHH
Confidence 99999999999999999999999999999999989999999999999999999999999999999999999999999999
Q ss_pred ceeeeEEe
Q 037286 161 GWLIHSVV 168 (235)
Q Consensus 161 d~L~~~~v 168 (235)
++| .+++
T Consensus 229 ~kf-r~aa 235 (241)
T PLN03152 229 VKL-RSAA 235 (241)
T ss_pred HHH-HHHH
Confidence 997 6553
No 2
>PLN00042 photosystem II oxygen-evolving enhancer protein 2; Provisional
Probab=100.00 E-value=3.2e-41 Score=301.33 Aligned_cols=141 Identities=21% Similarity=0.376 Sum_probs=120.0
Q ss_pred CccccccceeeeecCceeEecCCCCCCCCCCccCCCcccccCCCCCCcceeeeecCCCCceEEEEEEEeCCccccccccc
Q 037286 2 TGIANTKSWFQFYGDGFSIRVPPQFEDISEPEDYNAGLSLYGDKAKPKTFAARFATPDGSEVLSVVIRPSNQLKITFLEA 81 (235)
Q Consensus 2 ~~~~Ntt~w~~y~GdGF~i~vP~kwn~skE~e~f~~~~~~Y~D~akp~~~~aRF~~~Dg~eNVSVvV~Pt~qlK~tFlek 81 (235)
+.+.|.++|.+|.||||+|+||++|++++|.+ |||++.+|+| ++|++|||||+|+|++ |
T Consensus 84 g~~k~~~gF~~y~~dgY~FlyP~~W~~~ke~~-~~G~dv~f~D------------~~~~~eNVSV~Ispt~--------k 142 (260)
T PLN00042 84 GKPKTNTGFLPYNGDGFKLLVPSKWNPSKERE-FPGQVLRFED------------NFDATSNLSVMVTPTD--------K 142 (260)
T ss_pred CCCCCCCCCeEeeCCCeEEecCCCCccccccc-cCCceEEeec------------cccccccEEEEEecCC--------c
Confidence 45789999999999999999999999999997 9999999998 8899999999999997 7
Q ss_pred cCcccCCCHHHHHh----hh-----ccC-----C--------ceEEeeeeeeeeeccCCeeeEEEEEEe-------CceE
Q 037286 82 QDITDFGTLKDAAK----IF-----VPG-----G--------ATLYSARTIKIKEEEGFKSYYFYEFGR-------DEQH 132 (235)
Q Consensus 82 KsItdfGSPeEva~----l~-----vp~-----G--------akl~sAs~lev~~~~ggKtYY~yEfl~-------ggrH 132 (235)
+||+|||+||||++ ++ .++ | ++|++|+.+ +.+||+||.|||++ ++||
T Consensus 143 ~sI~dlGsPee~l~~vgylL~kq~~a~~t~s~~Gf~p~~vata~Lleas~r----e~dGk~YY~lE~~~~~ad~d~~~RH 218 (260)
T PLN00042 143 KSITDYGSPEEFLSKVSYLLGKQAYSGETASEGGFDANAVATAAVLESSTQ----EVGGKPYYYLSVLTRTADGDEGGKH 218 (260)
T ss_pred CCHhhcCCHHHHHHHHHHHHHhhhccCccccccCcCcccccceeEEEeeeE----EeCCeEEEEEEEEEecCCCCCCCce
Confidence 99999999999654 22 222 1 245555555 45789999999996 4899
Q ss_pred EEEEEEEeCCeEEEEccCCCCcchhhccceeeeEE
Q 037286 133 VALVAAINSGKRHLDAPMCPSLNRRLLSGWLIHSV 167 (235)
Q Consensus 133 ~LitAaV~~GKLYtl~AqApekRW~k~kd~L~~~~ 167 (235)
+|++|||++||||||++|+||+||+|++++++..+
T Consensus 219 ~LatatV~~GkLYtl~aqa~EkRW~K~~~k~l~~v 253 (260)
T PLN00042 219 QLITATVSDGKLYICKAQAGDKRWFKGARKFVEGA 253 (260)
T ss_pred EEEEEEEECCEEEEEEecCchhhhhHHHHHHHHHH
Confidence 99999999999999999999999999955443444
No 3
>PLN00067 PsbP domain-containing protein 6; Provisional
Probab=99.97 E-value=1.6e-31 Score=239.46 Aligned_cols=142 Identities=15% Similarity=0.194 Sum_probs=109.2
Q ss_pred CceeEecCCCCCCCCCCccCCCcccccCCCC-CCcceeeeecCCCCceEEEEEEEeCCccccccccccCcccCCCHHHHH
Q 037286 16 DGFSIRVPPQFEDISEPEDYNAGLSLYGDKA-KPKTFAARFATPDGSEVLSVVIRPSNQLKITFLEAQDITDFGTLKDAA 94 (235)
Q Consensus 16 dGF~i~vP~kwn~skE~e~f~~~~~~Y~D~a-kp~~~~aRF~~~Dg~eNVSVvV~Pt~qlK~tFlekKsItdfGSPeEva 94 (235)
.||+|+||++|+++++..--.|. |.++. .+-...+||++ +..+||||||.|+.++ |=-+.++|+|||+|+||+
T Consensus 105 ~gY~FlyP~gW~~v~Vs~~~sGn---ycqp~c~~p~~dv~F~D-~~dgnVSVIVSPV~r~--t~k~~~sIeDlGsPeeVl 178 (263)
T PLN00067 105 QPYQFILPPTWKQTRVANILSGN---YCQPKCAEPWVEVKFED-EKQGKVQVVASPLIRL--TNKPNATIEEIGSPEKLI 178 (263)
T ss_pred ccceEeCCCCCcCccccccccCc---cccccccCCCceEEEeC-CCCCCEEEEEeccccc--ccCCCCChHHccCHHHHH
Confidence 48999999999999996411111 33322 12245777775 3355999999998532 101458999999999999
Q ss_pred hhhcc-----CC--ceEEeeeeeeeeeccCCeeeEEEEEEe----CceEEEEEEEEeCCeEEEEccCCCCcchhhcccee
Q 037286 95 KIFVP-----GG--ATLYSARTIKIKEEEGFKSYYFYEFGR----DEQHVALVAAINSGKRHLDAPMCPSLNRRLLSGWL 163 (235)
Q Consensus 95 ~l~vp-----~G--akl~sAs~lev~~~~ggKtYY~yEfl~----ggrH~LitAaV~~GKLYtl~AqApekRW~k~kd~L 163 (235)
+-+.+ ++ .+|++|+.++ .+||+||+||+.+ ++||+|++|||++||||||++||+|+||+|+|+.|
T Consensus 179 ~~Lg~~v~g~~~~~~eLLeAs~re----~dGktYY~~E~~tp~a~~gRHnLataTV~~GkLYtf~asanEkRW~K~k~~l 254 (263)
T PLN00067 179 ASLGPFVTGNSYDPDELLETSVEK----IGDQTYYKYVLETPFALTGSHNLAKATAKGNTVVLFVVSASDKQWQSSEKTL 254 (263)
T ss_pred HHhhHHhhcCCCCCcceEEeeeEe----eCCeEEEEEEEEecCCCCCceEEEEEEEECCEEEEEEecCCHHHHHHHHHHH
Confidence 85432 22 5799998884 4689999999997 49999999999999999999999999999999998
Q ss_pred eeEEe
Q 037286 164 IHSVV 168 (235)
Q Consensus 164 ~~~~v 168 (235)
++++
T Consensus 255 -~~V~ 258 (263)
T PLN00067 255 -KAIL 258 (263)
T ss_pred -HHHH
Confidence 5543
No 4
>PF01789 PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbP. Both PsbP and PsbQ (IPR008797 from INTERPRO) are regulators that are necessary for the biogenesis of optically active PSII. PsbP increases the affinity of the water oxidation site for chloride ions and provides the conditions required for high affinity binding of calcium ions [, ]. The crystal structure of PsbP from Nicotiana tabacum (Common tobacco) revealed a two-domain structure, where domain 1 may play a role in the ion retention activity in PSII, the N-terminal residues being essential for calcium and chloride ion retention activity []. PsbP is encoded in the nuclear genome in plants.; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 2VU4_A 1V2B_A 2LNJ_A 2XB3_A.
Probab=99.96 E-value=2.6e-30 Score=212.64 Aligned_cols=133 Identities=23% Similarity=0.370 Sum_probs=106.7
Q ss_pred cccccceeee--ecCceeEecCCCCCCCCCCccCCCcccccCCCCCCcceeeeecCCCCceEEEEEEEeCCccccccccc
Q 037286 4 IANTKSWFQF--YGDGFSIRVPPQFEDISEPEDYNAGLSLYGDKAKPKTFAARFATPDGSEVLSVVIRPSNQLKITFLEA 81 (235)
Q Consensus 4 ~~Ntt~w~~y--~GdGF~i~vP~kwn~skE~e~f~~~~~~Y~D~akp~~~~aRF~~~Dg~eNVSVvV~Pt~qlK~tFlek 81 (235)
.+++++|.+| .++||+|.+|++|++... +|...+|.| +.|..+||||+|+|+++ +
T Consensus 17 ~~~~~~~~~y~d~~~~y~f~~P~gW~~~~~----~G~~v~f~d------------~~~~~~nvsV~v~p~~~-------~ 73 (175)
T PF01789_consen 17 AEASTGFQPYTDSDDGYSFLYPSGWEEVDV----SGADVVFRD------------PIDADENVSVVVSPVPK-------D 73 (175)
T ss_dssp TT--SSEEEEEECTTTEEEEEETTEEEEES----TTEEEEEEE------------TTETTSEEEEEEEE-ST-------S
T ss_pred ccCCCCceEEEcCCCCEEEECCCCCeecCC----CCeEEEEEC------------cccccceEEEEEEecCC-------c
Confidence 4678999999 999999999999954433 444444444 55889999999999984 4
Q ss_pred cCcccCCCHHHHHhhhc-----cCC----ceEEeeeeeeeeeccCCeeeEEEEEEe-----CceEEEEEEEEeCCeEEEE
Q 037286 82 QDITDFGTLKDAAKIFV-----PGG----ATLYSARTIKIKEEEGFKSYYFYEFGR-----DEQHVALVAAINSGKRHLD 147 (235)
Q Consensus 82 KsItdfGSPeEva~l~v-----p~G----akl~sAs~lev~~~~ggKtYY~yEfl~-----ggrH~LitAaV~~GKLYtl 147 (235)
++|+|||+|+|+|+-++ +.+ +++++|+.++ .+|++||.|||.. +.||+++++||.+||||++
T Consensus 74 ~sl~~lGs~~~va~~l~~~~~~~~~~~~~a~li~a~~~~----~~g~~yY~~Ey~~~~~~~~~rh~l~~~tv~~g~lY~l 149 (175)
T PF01789_consen 74 FSLEDLGSPEEVAERLLNGELASPGSGREAELISASERE----VDGKTYYEYEYTVQSPNEGRRHNLAVVTVKNGKLYTL 149 (175)
T ss_dssp -SGGGG-SHHHHHHHHHHHCCCHCTSSEEEEEEEEEEEE----ETTEEEEEEEEEEEETTEEEEEEEEEEEEETTEEEEE
T ss_pred CchhhcCCHHHHHHHHhhhhcccccCCcceEEEEeeeee----cCCccEEEEEEEeccCCCcccEEEEEEEEECCEEEEE
Confidence 49999999999998554 333 6788887773 4579999999996 3699999999999999999
Q ss_pred ccCCCCcchhhcccee
Q 037286 148 APMCPSLNRRLLSGWL 163 (235)
Q Consensus 148 ~AqApekRW~k~kd~L 163 (235)
++|+||+||.++++.|
T Consensus 150 ~~~a~e~~w~k~~~~l 165 (175)
T PF01789_consen 150 TAQAPESRWDKVEPKL 165 (175)
T ss_dssp EEEEEHHHHHTCHHHH
T ss_pred EEEcCHHHHHHHHHHH
Confidence 9999999999999988
No 5
>PLN00059 PsbP domain-containing protein 1; Provisional
Probab=99.94 E-value=1.4e-27 Score=215.53 Aligned_cols=137 Identities=17% Similarity=0.185 Sum_probs=113.7
Q ss_pred ccceeeee--cCceeEecCCCCCCCCCCccCCCcccccCCCCCCcceeeeecCCCCceEEEEEEEeCCccccccccccCc
Q 037286 7 TKSWFQFY--GDGFSIRVPPQFEDISEPEDYNAGLSLYGDKAKPKTFAARFATPDGSEVLSVVIRPSNQLKITFLEAQDI 84 (235)
Q Consensus 7 tt~w~~y~--GdGF~i~vP~kwn~skE~e~f~~~~~~Y~D~akp~~~~aRF~~~Dg~eNVSVvV~Pt~qlK~tFlekKsI 84 (235)
..+|.+|. .|||+|++|.+|.+++. .|....|.|.+++ +|||||+|+|++.- ..+||
T Consensus 106 ~~~l~~y~D~~DGY~FlYP~GWi~V~~----~G~DVvFrD~Ie~------------~ENVSV~ISs~sss-----~~~sL 164 (286)
T PLN00059 106 IPVFREYIDTFDGYSFKYPQNWIQVRG----AGADIFFRDPVVL------------DENLSVEFSSPSSS-----KYTSL 164 (286)
T ss_pred CcccceeEcCCCCeEEeCCCCCeEecc----CCCceEEeccCcc------------ccceEEEEecCCcc-----cCCCh
Confidence 44577775 59999999999999983 2677888886666 99999999987610 16899
Q ss_pred ccCCCHHHHHhhh-----cc-----CC----ceEEeeeeeeeeeccCCeeeEEEEEEe-------------C--------
Q 037286 85 TDFGTLKDAAKIF-----VP-----GG----ATLYSARTIKIKEEEGFKSYYFYEFGR-------------D-------- 129 (235)
Q Consensus 85 tdfGSPeEva~l~-----vp-----~G----akl~sAs~lev~~~~ggKtYY~yEfl~-------------g-------- 129 (235)
+|||+|+|||+.+ .| +| ++|++|+.++ +.+||+||.|||.+ +
T Consensus 165 eDLGsP~eVgerLlkqvLa~f~str~GsgReaeLVsA~~Re---~~DGktYY~lEY~Vks~~~~n~~~~~~qdr~~~~~w 241 (286)
T PLN00059 165 EDLGSPEEVGKRVLRQYLTEFMSTRLGVKREANILSTSSRV---ADDGKLYYQVEVNIKSYANNNELAVMPQDRVARLEW 241 (286)
T ss_pred HHcCCHHHHHHHHHHHHhcccccccCCCCcceEEEEeeeEE---ccCCcEEEEEEEEEEcCccccccccccccccccccc
Confidence 9999999999833 44 23 7899998885 43589999999995 1
Q ss_pred ceEEEEEEEEeCCeEEEEccCCCCcchhhccceeeeEEe
Q 037286 130 EQHVALVAAINSGKRHLDAPMCPSLNRRLLSGWLIHSVV 168 (235)
Q Consensus 130 grH~LitAaV~~GKLYtl~AqApekRW~k~kd~L~~~~v 168 (235)
.||++++++|.+|||||+++|+||+||.|+|+.| +.|+
T Consensus 242 ~RH~LA~v~V~nGkLYTL~~qtpE~RW~kvk~~f-~~V~ 279 (286)
T PLN00059 242 NRRYLAVLGVENDRLYSIRLQTPEKVFLEEEKDL-RRVM 279 (286)
T ss_pred ceeeEEEEEEeCCEEEEEEcCCcHHHHHHHHHHH-HHHH
Confidence 7999999999999999999999999999999998 6554
No 6
>PLN00066 PsbP domain-containing protein 4; Provisional
Probab=99.94 E-value=1.9e-27 Score=213.04 Aligned_cols=133 Identities=20% Similarity=0.311 Sum_probs=110.4
Q ss_pred CceeEecCCCCCCCCCCccCCCcccccCCCCCCcceeeeecCCCCceEEEEEEEeCCccccccccccCcccCCCHHHHHh
Q 037286 16 DGFSIRVPPQFEDISEPEDYNAGLSLYGDKAKPKTFAARFATPDGSEVLSVVIRPSNQLKITFLEAQDITDFGTLKDAAK 95 (235)
Q Consensus 16 dGF~i~vP~kwn~skE~e~f~~~~~~Y~D~akp~~~~aRF~~~Dg~eNVSVvV~Pt~qlK~tFlekKsItdfGSPeEva~ 95 (235)
..|+|.||++|.++..-.-=++| ..+++||.+ +.++||||+|.|+++|..++.++++|+|||+|+||++
T Consensus 113 ~~Y~F~yP~GW~ev~VS~~d~gg----------~~vd~Rf~~-~~~~nvsVvVspv~rla~~~~~~~sI~dLGspeeVi~ 181 (262)
T PLN00066 113 TPYSFKVPQGWEEVPVSIADLGG----------TEIDLRFAS-DKEGRLKVVVAPVLRFADNLGDNATIEEIGPPEKVIS 181 (262)
T ss_pred CCeEEECCCCCeEeecccccCCC----------CceEEEecc-CCCccEEEEEeccccccccccCCCChHHcCCHHHHHH
Confidence 56899999999987663200122 346889998 6889999999999988777778999999999999999
Q ss_pred hhccC--C-----ceEEeeeeeeeeeccCCeeeEEEEEEeCceEEEEEEEEeCCeEEEEccCCCCcchhhccceeeeEE
Q 037286 96 IFVPG--G-----ATLYSARTIKIKEEEGFKSYYFYEFGRDEQHVALVAAINSGKRHLDAPMCPSLNRRLLSGWLIHSV 167 (235)
Q Consensus 96 l~vp~--G-----akl~sAs~lev~~~~ggKtYY~yEfl~ggrH~LitAaV~~GKLYtl~AqApekRW~k~kd~L~~~~ 167 (235)
.|.|. | ++|++|+.+ +.+|++||.||+ .||+|++|||.+||||||++||||+||+|+++.| ..+
T Consensus 182 ~l~~~v~g~~~~e~eLl~a~~r----e~dGktYY~~E~---~rH~LasaTV~~GrLYt~~asape~rW~k~~~~l-r~v 252 (262)
T PLN00066 182 GFGPELIGEPVEEGKVLSMEVA----EHSGRTYYQFEL---PPHTLVTATAAGNRVYIFSVTANGLQWKRHYKDL-KRI 252 (262)
T ss_pred HHHHHhcCCCccccceeEeeee----ecCCcEEEEEEE---eCceEEEEEEECCEEEEEEeecchHhhHHHHHHH-HHH
Confidence 76541 2 567877665 456799999999 6999999999999999999999999999999998 444
No 7
>KOG4599 consensus Putative mitochondrial/chloroplast ribosomal protein L45 [Translation, ribosomal structure and biogenesis]
Probab=97.25 E-value=0.00013 Score=69.44 Aligned_cols=69 Identities=25% Similarity=0.300 Sum_probs=64.4
Q ss_pred ccccceeeeecCceeEecCCCCCCCCCCccCCCcccccCCCCCCcceeeeecCCCCceEEEEEEEeCCccccccccccCc
Q 037286 5 ANTKSWFQFYGDGFSIRVPPQFEDISEPEDYNAGLSLYGDKAKPKTFAARFATPDGSEVLSVVIRPSNQLKITFLEAQDI 84 (235)
Q Consensus 5 ~Ntt~w~~y~GdGF~i~vP~kwn~skE~e~f~~~~~~Y~D~akp~~~~aRF~~~Dg~eNVSVvV~Pt~qlK~tFlekKsI 84 (235)
-||.+|+|+.|. +.|+||++.-+|+++..+...|++++|++..+.++.+|++ .++++|+|+..++|
T Consensus 50 l~t~~~f~~f~~----l~~~kfe~~d~p~~~~k~~~i~kek~k~~~~a~~v~~Pr~----------~ne~~i~f~~~~gI 115 (379)
T KOG4599|consen 50 LNTKEWFPSFKN----LSGAKFESGDDPDPILKRTIISKEKMKSANKAGLVIPPRK----------WNERPIHFSCTGGI 115 (379)
T ss_pred CCChhhhhhhhc----cCcccccccCCccccccccchhhhhhccccccccccCCcc----------ccccceEEEeeccc
Confidence 489999999999 9999999999999999999999999999999999999988 77888999999999
Q ss_pred ccC
Q 037286 85 TDF 87 (235)
Q Consensus 85 tdf 87 (235)
-|.
T Consensus 116 fD~ 118 (379)
T KOG4599|consen 116 FDA 118 (379)
T ss_pred ccc
Confidence 875
No 8
>PF08786 DUF1795: Domain of unknown function (DUF1795); InterPro: IPR014894 This is a bacterial protein of unknown function. It forms an antiparallel beta sheet structure and contains some alpha helical regions. ; PDB: 1TU1_A 3LYD_A.
Probab=86.64 E-value=4.6 Score=31.54 Aligned_cols=69 Identities=14% Similarity=0.014 Sum_probs=42.5
Q ss_pred CCHHHHHhh----h--ccCCceEEeeeeeeeeeccCCeeeEEEEEEe----CceEEEEEEEEeC-CeEEEEccCCCCcch
Q 037286 88 GTLKDAAKI----F--VPGGATLYSARTIKIKEEEGFKSYYFYEFGR----DEQHVALVAAINS-GKRHLDAPMCPSLNR 156 (235)
Q Consensus 88 GSPeEva~l----~--vp~Gakl~sAs~lev~~~~ggKtYY~yEfl~----ggrH~LitAaV~~-GKLYtl~AqApekRW 156 (235)
.++++++.- + -.+|=++.+.... ..++..-+.++|.- ..-||..+++..+ ++++++..+++..-.
T Consensus 41 ~tl~~~~~~q~~~l~~~l~~~~~~~~~~~----~l~~~~a~~l~~~~~~~g~~v~Q~q~~~~~~~~~~l~~T~t~~~~~~ 116 (130)
T PF08786_consen 41 ETLEDYLQRQLAQLRKQLPGFQLVERQPI----TLGGRPARELEYSFRSGGQPVYQRQAAVLLPGRRVLVFTYTAPGPFT 116 (130)
T ss_dssp S-HHHHHHHHHHHHHCCSTT-EEEEEEEE----EETTEEEEEEEEEEEETTCEEEEEEEEEEEC-CCEEEEEEEEECCCH
T ss_pred CCHHHHHHHHHHHHHhhCCCcEEEeeEEE----EeCCCCeEEEEEEEeeCCEEEEEEEEEEEECCCEEEEEEEEcCCCCC
Confidence 466666641 1 2455556654433 33445555555553 3578988888888 999999999987655
Q ss_pred hhcc
Q 037286 157 RLLS 160 (235)
Q Consensus 157 ~k~k 160 (235)
.+-+
T Consensus 117 ~~~~ 120 (130)
T PF08786_consen 117 EEQR 120 (130)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 9
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=73.64 E-value=4.3 Score=24.26 Aligned_cols=23 Identities=4% Similarity=-0.109 Sum_probs=19.3
Q ss_pred EEEEEeCCeEEEEccCCCCcchh
Q 037286 135 LVAAINSGKRHLDAPMCPSLNRR 157 (235)
Q Consensus 135 itAaV~~GKLYtl~AqApekRW~ 157 (235)
+-++-.+|++|.+.+..++.+|.
T Consensus 9 v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 9 VYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred EEEEcCCCEEEEEEcccCcEEEE
Confidence 33455789999999999999996
No 10
>PF10738 Lpp-LpqN: Probable lipoprotein LpqN; InterPro: IPR019674 This protein is conserved in Mycobacteriaceae and is likely to be a lipoprotein [].
Probab=69.11 E-value=44 Score=28.95 Aligned_cols=56 Identities=18% Similarity=0.214 Sum_probs=34.2
Q ss_pred ceeEecCCCCCCCCCCccCCCcccccCCCCCCcceeeeecCCCCceEEEEEEEeCCccccccccccCcccCCCHHHHHh
Q 037286 17 GFSIRVPPQFEDISEPEDYNAGLSLYGDKAKPKTFAARFATPDGSEVLSVVIRPSNQLKITFLEAQDITDFGTLKDAAK 95 (235)
Q Consensus 17 GF~i~vP~kwn~skE~e~f~~~~~~Y~D~akp~~~~aRF~~~Dg~eNVSVvV~Pt~qlK~tFlekKsItdfGSPeEva~ 95 (235)
-.++-.|++|.+...+. +|..-...-|+ . ++.+-..|..|+|..-.- +| +|+|+++
T Consensus 32 ~v~lP~P~GW~~~~~~~-~~~a~~vi~~~--------~-~~~~~~Pnavv~V~kL~G---~~----------Dp~e~l~ 87 (175)
T PF10738_consen 32 TVSLPTPPGWEPAPDPN-PPWAYAVIVDP--------Q-ADGGFPPNAVVTVSKLTG---DF----------DPAEALE 87 (175)
T ss_pred EEeccCCcCcccCCCCC-CCceEEEEEec--------c-ccCCCCCceEEEEEeccC---CC----------CHHHHHH
Confidence 35788899999998875 54442211110 1 234446778888877541 22 4888876
No 11
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=55.95 E-value=12 Score=23.83 Aligned_cols=18 Identities=11% Similarity=-0.129 Sum_probs=15.8
Q ss_pred EEEEEeCCeEEEEccCCC
Q 037286 135 LVAAINSGKRHLDAPMCP 152 (235)
Q Consensus 135 itAaV~~GKLYtl~AqAp 152 (235)
.++++-+|++|+++....
T Consensus 5 ~~~~~~~~~iyv~GG~~~ 22 (47)
T PF01344_consen 5 HAAVVVGNKIYVIGGYDG 22 (47)
T ss_dssp EEEEEETTEEEEEEEBES
T ss_pred CEEEEECCEEEEEeeecc
Confidence 478889999999998877
No 12
>PF04502 DUF572: Family of unknown function (DUF572) ; InterPro: IPR007590 This entry represents eukaryotic proteins with undetermined function belonging to the CWC16 family.
Probab=48.06 E-value=14 Score=34.29 Aligned_cols=32 Identities=25% Similarity=0.443 Sum_probs=24.9
Q ss_pred eeEecCCCCCCCCCCccCCCcccccCCCCCCcceeeeec-CC
Q 037286 18 FSIRVPPQFEDISEPEDYNAGLSLYGDKAKPKTFAARFA-TP 58 (235)
Q Consensus 18 F~i~vP~kwn~skE~e~f~~~~~~Y~D~akp~~~~aRF~-~~ 58 (235)
+.--|||+|++++.|- +.+|++.-+.+||+ ||
T Consensus 7 ~nkYyPPD~d~~k~~~---------~kr~k~~~~~VRf~~Pf 39 (324)
T PF04502_consen 7 LNKYYPPDFDPSKHPL---------RKRAKQGILTVRFMMPF 39 (324)
T ss_pred CCCccCCCCCcccccc---------cccCcCcceEEEEcCCc
Confidence 3446999999888863 45677888999999 66
No 13
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=46.77 E-value=20 Score=22.85 Aligned_cols=24 Identities=4% Similarity=-0.132 Sum_probs=20.5
Q ss_pred EEEEeCCeEEEEccCCCCcchhhc
Q 037286 136 VAAINSGKRHLDAPMCPSLNRRLL 159 (235)
Q Consensus 136 tAaV~~GKLYtl~AqApekRW~k~ 159 (235)
-++-.+|.+|-+++..|+..|+.-
T Consensus 4 ~~~~~~g~l~AlD~~TG~~~W~~~ 27 (38)
T PF01011_consen 4 YVGTPDGYLYALDAKTGKVLWKFQ 27 (38)
T ss_dssp EEETTTSEEEEEETTTTSEEEEEE
T ss_pred EEeCCCCEEEEEECCCCCEEEeee
Confidence 345789999999999999999753
No 14
>KOG0137 consensus Very-long-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=46.19 E-value=48 Score=34.47 Aligned_cols=74 Identities=20% Similarity=0.266 Sum_probs=45.3
Q ss_pred eeEecCCCCCCCCCCccCCCcccccCCCCCCcceeeeecCCCCceEEEEEEEeCCccccccccccCcccCCCHHHHHhhh
Q 037286 18 FSIRVPPQFEDISEPEDYNAGLSLYGDKAKPKTFAARFATPDGSEVLSVVIRPSNQLKITFLEAQDITDFGTLKDAAKIF 97 (235)
Q Consensus 18 F~i~vP~kwn~skE~e~f~~~~~~Y~D~akp~~~~aRF~~~Dg~eNVSVvV~Pt~qlK~tFlekKsItdfGSPeEva~l~ 97 (235)
|.+.||+.|.+.-= -++..+|-.-+++...++|-+.-..-.-|.| |.|.-+|++++-.+.+
T Consensus 124 fgl~v~~e~~G~G~----------------~ntq~arl~e~~~~~D~~v~~tl~ahq~i~~---k~l~lyGt~~Qk~kYL 184 (634)
T KOG0137|consen 124 FGLQVPSEFDGLGF----------------CNTQYARLFEIVSVADLNVGVTLGAHQSIGL---KGLLLYGTDEQKQKYL 184 (634)
T ss_pred eeeccCcccCcccc----------------chHHHHHHhhccccccccceeeeccchhhhe---eeeeecCCHHHHHHHH
Confidence 67777777665432 1233455555566667777776665434555 8999999999999844
Q ss_pred cc-CCceEEeeeee
Q 037286 98 VP-GGATLYSARTI 110 (235)
Q Consensus 98 vp-~Gakl~sAs~l 110 (235)
=- .-.+++.|-.+
T Consensus 185 ~~LaSg~~~~A~al 198 (634)
T KOG0137|consen 185 PKLASGKLIAAFAL 198 (634)
T ss_pred HhhhcCCccceEEE
Confidence 22 22445554333
No 15
>PF13964 Kelch_6: Kelch motif
Probab=35.29 E-value=40 Score=22.02 Aligned_cols=18 Identities=22% Similarity=0.041 Sum_probs=15.0
Q ss_pred EEEEeCCeEEEEccCCCC
Q 037286 136 VAAINSGKRHLDAPMCPS 153 (235)
Q Consensus 136 tAaV~~GKLYtl~AqApe 153 (235)
++++-+|++|+++...+.
T Consensus 6 s~v~~~~~iyv~GG~~~~ 23 (50)
T PF13964_consen 6 SAVVVGGKIYVFGGYDNS 23 (50)
T ss_pred EEEEECCEEEEECCCCCC
Confidence 456678899999999886
No 16
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=30.31 E-value=15 Score=30.61 Aligned_cols=17 Identities=24% Similarity=0.423 Sum_probs=14.2
Q ss_pred ccCcccCCCHHHHHhhh
Q 037286 81 AQDITDFGTLKDAAKIF 97 (235)
Q Consensus 81 kKsItdfGSPeEva~l~ 97 (235)
.+=+.+||||+|+|+-+
T Consensus 44 eeii~~LG~P~~iA~~i 60 (181)
T PF08006_consen 44 EEIIAELGSPKEIAREI 60 (181)
T ss_pred HHHHHHcCCHHHHHHHH
Confidence 56789999999999844
No 17
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=29.19 E-value=35 Score=30.56 Aligned_cols=29 Identities=17% Similarity=0.257 Sum_probs=22.1
Q ss_pred CCCCCCccCCCcccccCCCCCCcceeeeecCC
Q 037286 27 EDISEPEDYNAGLSLYGDKAKPKTFAARFATP 58 (235)
Q Consensus 27 n~skE~e~f~~~~~~Y~D~akp~~~~aRF~~~ 58 (235)
|-.-|||+|||=+-|-.| |+.+.+=|+|.
T Consensus 127 ~~eYEPEqFPGLVYRl~~---P~VV~LiF~SG 155 (185)
T COG2101 127 NIEYEPEQFPGLVYRLDE---PRVVLLLFGSG 155 (185)
T ss_pred ccccccccCCeeEEEcCC---CCEEEEEecCC
Confidence 355689999987666555 88888888875
No 18
>PF09211 DUF1958: Domain of unknown function (DUF1958); InterPro: IPR015294 Penicillin-binding proteins are beta-lactam antibiotic-sensitive bacterial enzymes required for the growth and maintenance of the peptidoglycan layer of the bacterial cell wall that protects the cell from osmotic stress. Penicillin-binding protein 4 (PBP4) functions as a transpeptidase, and belongs to MEROPS peptidase family S11 (clan SE). PBP4 acts co-operatively with PBP2 in staphylococcal cell wall biosynthesis and susceptibility to antimicrobial agents []. This entry represents the C-terminal domain PBP4.; PDB: 1TVF_A 3HUN_A 3HUM_B.
Probab=28.62 E-value=1.4e+02 Score=22.65 Aligned_cols=40 Identities=23% Similarity=0.345 Sum_probs=25.4
Q ss_pred eEEeeeeeeeeeccCCeeeE----EEEEEeCceEEEEEEEEeCCeEEEE
Q 037286 103 TLYSARTIKIKEEEGFKSYY----FYEFGRDEQHVALVAAINSGKRHLD 147 (235)
Q Consensus 103 kl~sAs~lev~~~~ggKtYY----~yEfl~ggrH~LitAaV~~GKLYtl 147 (235)
+|.++-.. +.+||+|+ +|+....+..- -...|+||++++-
T Consensus 3 KvLskG~h----~IdGk~y~v~kDlYd~VpK~~~~-~~~~v~dg~v~vd 46 (65)
T PF09211_consen 3 KVLSKGEH----TIDGKKYYVKKDLYDVVPKGKKP-YKLKVKDGKVHVD 46 (65)
T ss_dssp EEE-SEEE----EETTEEEEESS-EEEEEETT--G-SEEEEETTEEEEE
T ss_pred ccccCccE----EECCEEEEecCChhhhccCCCcc-ceEEEeCCEEEEe
Confidence 56666665 56789998 46666654433 4567788998874
No 19
>smart00456 WW Domain with 2 conserved Trp (W) residues. Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides.
Probab=27.72 E-value=48 Score=20.02 Aligned_cols=20 Identities=5% Similarity=-0.122 Sum_probs=16.4
Q ss_pred eCCeEEEEccCCCCcchhhc
Q 037286 140 NSGKRHLDAPMCPSLNRRLL 159 (235)
Q Consensus 140 ~~GKLYtl~AqApekRW~k~ 159 (235)
.+|+.|-.+....+++|.+-
T Consensus 11 ~~g~~yy~n~~t~~s~W~~P 30 (32)
T smart00456 11 PDGRPYYYNHETKETQWEKP 30 (32)
T ss_pred CCCCEEEEECCCCCEEcCCC
Confidence 34889999999999999764
No 20
>PF11182 AlgF: Alginate O-acetyl transferase AlgF
Probab=24.03 E-value=2.9e+02 Score=24.36 Aligned_cols=53 Identities=19% Similarity=0.337 Sum_probs=32.7
Q ss_pred ccccCCCCCCcceeeeecCCCCceEEEEEEEeCCccccccccccCcccCCCHHHHHhhhccCCc
Q 037286 39 LSLYGDKAKPKTFAARFATPDGSEVLSVVIRPSNQLKITFLEAQDITDFGTLKDAAKIFVPGGA 102 (235)
Q Consensus 39 ~~~Y~D~akp~~~~aRF~~~Dg~eNVSVvV~Pt~qlK~tFlekKsItdfGSPeEva~l~vp~Ga 102 (235)
-.+|+.++.+..-=+||-|....+ ++|.++-.. ...+++.-.-....++|+|.
T Consensus 17 ~~LY~~~pP~~SAFVRvvN~~~~~-~~v~~~g~~----------~~~~~~~~~~~~~~~~~~G~ 69 (181)
T PF11182_consen 17 AQLYEARPPAGSAFVRVVNASAAP-VSVTVSGSK----------AFQQLAPDQASSYFFVPPGG 69 (181)
T ss_pred cccccCCCCCCCeEEEEEcCCCCc-EEEEEecCC----------cccccCCCCccceeecCCCc
Confidence 468999999888889999875433 666664332 22333333333346777774
No 21
>PF07009 DUF1312: Protein of unknown function (DUF1312); InterPro: IPR010739 This family consists of several bacterial proteins of around 120 residues in length. The function of this family is unknown.; PDB: 4ESN_B 1NPP_B 1M1G_D 1NPR_A 1M1H_A 2KPP_A 3LD7_C.
Probab=22.69 E-value=2e+02 Score=22.68 Aligned_cols=39 Identities=18% Similarity=0.117 Sum_probs=26.2
Q ss_pred CCeeeEEEEEEe---------CceEEEEEEEEeCCeEEEEccCCCCcc
Q 037286 117 GFKSYYFYEFGR---------DEQHVALVAAINSGKRHLDAPMCPSLN 155 (235)
Q Consensus 117 ggKtYY~yEfl~---------ggrH~LitAaV~~GKLYtl~AqApekR 155 (235)
+|+.|+.++.-. ++..-..+.-|.||+.++..+..|++-
T Consensus 34 ~g~~~~~i~L~~~~~~~~i~i~~~~g~~~i~i~~g~vrv~~s~Cpdki 81 (113)
T PF07009_consen 34 DGKEVKRIPLDKVNEDKTIEIDGDGGYNTIEIKDGKVRVIESDCPDKI 81 (113)
T ss_dssp TTEEEEEEETTS-BSEEEEEEETTTCEEEEEEETTEEEEEEESTSS-H
T ss_pred CCEEEEEEECCCCCCCEEEEEecCCcEEEEEEECCEEEEEECCCCCcc
Confidence 456666653222 344444567799999999999999874
No 22
>COG2461 Uncharacterized conserved protein [Function unknown]
Probab=22.51 E-value=70 Score=31.75 Aligned_cols=40 Identities=15% Similarity=0.105 Sum_probs=23.4
Q ss_pred CceeEecCCCCCCCCCCccCCCcccccCCCCCCcceeeee
Q 037286 16 DGFSIRVPPQFEDISEPEDYNAGLSLYGDKAKPKTFAARF 55 (235)
Q Consensus 16 dGF~i~vP~kwn~skE~e~f~~~~~~Y~D~akp~~~~aRF 55 (235)
=||++..||+|.|.++.=+=.---..++..+|+--.++-+
T Consensus 226 igy~~i~p~~w~p~~~~i~e~~~~e~~~~l~ke~~~~ig~ 265 (409)
T COG2461 226 IGYAKIKPPKWKPKKESIHEEEIPEEQGALPKEVHRVIGM 265 (409)
T ss_pred cceEEecCccccCcccccccccCcchhhccchhHHHHhcC
Confidence 3999999999999887531111122344445554444443
No 23
>cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs.
Probab=21.82 E-value=1.1e+02 Score=17.98 Aligned_cols=20 Identities=5% Similarity=-0.175 Sum_probs=16.5
Q ss_pred eCCeEEEEccCCCCcchhhc
Q 037286 140 NSGKRHLDAPMCPSLNRRLL 159 (235)
Q Consensus 140 ~~GKLYtl~AqApekRW~k~ 159 (235)
.+|+.|-.+....+++|.+-
T Consensus 10 ~~g~~yy~n~~t~~s~W~~P 29 (31)
T cd00201 10 PDGRVYYYNHNTKETQWEDP 29 (31)
T ss_pred CCCCEEEEECCCCCEeCCCC
Confidence 45899999999999999764
No 24
>COG5242 TFB4 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription / DNA replication, recombination, and repair]
Probab=21.60 E-value=89 Score=29.55 Aligned_cols=135 Identities=26% Similarity=0.254 Sum_probs=69.5
Q ss_pred CCceEEEEEEEeCCccccccccccCcccCCCHHHHHh-hhccCCceEEeeeeeeeeeccCCeeeEEEEEEeCceEEEEEE
Q 037286 59 DGSEVLSVVIRPSNQLKITFLEAQDITDFGTLKDAAK-IFVPGGATLYSARTIKIKEEEGFKSYYFYEFGRDEQHVALVA 137 (235)
Q Consensus 59 Dg~eNVSVvV~Pt~qlK~tFlekKsItdfGSPeEva~-l~vp~Gakl~sAs~lev~~~~ggKtYY~yEfl~ggrH~LitA 137 (235)
|+-+-+-|++.-.+.+ =.+.++=|+-..|++ +.+=+++-+...+ ..+++..|
T Consensus 18 espslL~viid~~p~~------W~~~~ek~~~~kvl~di~VFLNAhlaf~~---------------------~NrVaVva 70 (296)
T COG5242 18 ESPSLLFVIIDLEPEN------WELTTEKGSRDKVLNDIVVFLNAHLAFSR---------------------NNRVAVVA 70 (296)
T ss_pred cCCceEEEEEecChhh------cccccccccHHHHHHHHHHHHHHHHhhcc---------------------CCeEEEEE
Confidence 3445566666544431 234556788888866 3333444333221 12456677
Q ss_pred EEeCCeEEEEccCCCCcchhhccceeeeEEeeeeeeeehhhhhhhcccceeeehhhHHhhhhhhcceeeehhhhhHhhhh
Q 037286 138 AINSGKRHLDAPMCPSLNRRLLSGWLIHSVVGISLINVSELYLATELSQIKIMKVMFHSCLNLMNYYSISYIMPFFLSYC 217 (235)
Q Consensus 138 aV~~GKLYtl~AqApekRW~k~kd~L~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (235)
+-++|+-|..--.+++.+=.+....- .+-.=-..-||.|+-+. | |-+.|-|.=-| -.-|.++-.|-.-|.||
T Consensus 71 ~~s~~~~yLypss~s~~k~se~e~tr-~sd~yrrfr~vde~~i~-e-----iyrl~e~~~k~-sqr~~v~gams~glay~ 142 (296)
T COG5242 71 GYSQGKTYLYPSSESALKASESENTR-NSDMYRRFRNVDETDIT-E-----IYRLIEHPHKN-SQRYDVGGAMSLGLAYC 142 (296)
T ss_pred eccCceEEeccCcchhhhhhcccCcc-chhhhhhhcccchHHHH-H-----HHHHHhCcccc-cceeehhhhhhhhHHHH
Confidence 77888888887777743222222111 00000011233332211 1 12333333333 23467888899999999
Q ss_pred ccccHHHHhcC
Q 037286 218 RHISLEQLLQS 228 (235)
Q Consensus 218 ~~~~~~~~~~~ 228 (235)
.|++-|.-|.|
T Consensus 143 n~~~~e~slkS 153 (296)
T COG5242 143 NHRDEETSLKS 153 (296)
T ss_pred hhhcccccccc
Confidence 99998865554
No 25
>COG3212 Predicted membrane protein [Function unknown]
Probab=21.15 E-value=4e+02 Score=22.49 Aligned_cols=51 Identities=22% Similarity=0.236 Sum_probs=32.1
Q ss_pred CHHHHHhhhc--cCCceEEeeeeeeeeeccCCeeeEEEEEEeC-ceEEEEEEEEeCCeE
Q 037286 89 TLKDAAKIFV--PGGATLYSARTIKIKEEEGFKSYYFYEFGRD-EQHVALVAAINSGKR 144 (235)
Q Consensus 89 SPeEva~l~v--p~Gakl~sAs~lev~~~~ggKtYY~yEfl~g-grH~LitAaV~~GKL 144 (235)
|++|+-++-. -+| ++.+..+- +++|+.+|..|+..+ ++-.=+..=++.|++
T Consensus 84 s~~ea~~iAl~~~~G-~v~dieLe----~~~g~~vYevei~~~d~~e~ev~iDA~TG~I 137 (144)
T COG3212 84 SLEEAKEIALKRVPG-KVDDIELE----EDNGRLVYEVEIVKDDGQEYEVEIDAKTGKI 137 (144)
T ss_pred CHHHHHHHHHHHCCC-ceeEEEEe----ccCCEEEEEEEEEeCCCcEEEEEEecCCCCc
Confidence 4455555322 245 77776443 556899999999985 766666555555554
No 26
>COG5435 Uncharacterized conserved protein [Function unknown]
Probab=20.27 E-value=5.8e+02 Score=22.18 Aligned_cols=105 Identities=15% Similarity=0.130 Sum_probs=57.5
Q ss_pred eEecCCCCCCCCCCccCCCcccccCCCCCCcceeeeecCCCCceEEEEEEEeCCccccccccccCcccCCCHHHHHhh--
Q 037286 19 SIRVPPQFEDISEPEDYNAGLSLYGDKAKPKTFAARFATPDGSEVLSVVIRPSNQLKITFLEAQDITDFGTLKDAAKI-- 96 (235)
Q Consensus 19 ~i~vP~kwn~skE~e~f~~~~~~Y~D~akp~~~~aRF~~~Dg~eNVSVvV~Pt~qlK~tFlekKsItdfGSPeEva~l-- 96 (235)
.|.+|..|.|-.-.= | .- ..+|++-+|.+|+.... +..+ +.++=+.+-
T Consensus 10 ~l~lP~~w~DrSvNv-f-----~~--------------~~~gt~~~sfvIsRd~~------~~g~----~~~~y~~rql~ 59 (147)
T COG5435 10 TLELPAAWQDRSVNV-F-----VS--------------GDNGTSGFSFVISRDPL------EPGD----TFPEYVQRQLA 59 (147)
T ss_pred eEcCcchhccceEEE-E-----Ee--------------cCCCcceeEEEEecCCC------CCCC----cHHHHHHHHHH
Confidence 478898888754421 2 11 22457888988888762 2221 223323331
Q ss_pred ---hccCCceEEeeeeeeeeeccCCeeeEEEEEE--eCce-EEEEEEEEeCCeEEEEccCCCC
Q 037286 97 ---FVPGGATLYSARTIKIKEEEGFKSYYFYEFG--RDEQ-HVALVAAINSGKRHLDAPMCPS 153 (235)
Q Consensus 97 ---~vp~Gakl~sAs~lev~~~~ggKtYY~yEfl--~ggr-H~LitAaV~~GKLYtl~AqApe 153 (235)
--++|=++..-...++....-.--+|.+-.. -++| ||+.+..-.++++-|+.++++-
T Consensus 60 ~l~k~Lpgy~~~~~~e~~v~~~aa~~~~y~w~~~~~~~r~v~q~~~~i~~g~~vLifT~Tt~~ 122 (147)
T COG5435 60 LLRKQLPGYELHHRREIEVGGAAAPLLDYQWTSPEGEQRRVQQRQVFIERGDTVLIFTLTTPG 122 (147)
T ss_pred HHHhhCCCeEEeeccccccCccccceeEEEeecCCCCCceEEEEEeecccCCeEEEEEecCCC
Confidence 1256656665554443333333567777773 2344 4555544466777777777763
No 27
>KOG0453 consensus Aconitase/homoaconitase (aconitase superfamily) [Energy production and conversion; Amino acid transport and metabolism]
Probab=20.05 E-value=1e+02 Score=32.77 Aligned_cols=46 Identities=24% Similarity=0.453 Sum_probs=30.0
Q ss_pred ecCceeEecCCCCCCCCCCccCCCcccccCCCCCCcceeeeecCCCCceEEEEEEEeCCc
Q 037286 14 YGDGFSIRVPPQFEDISEPEDYNAGLSLYGDKAKPKTFAARFATPDGSEVLSVVIRPSNQ 73 (235)
Q Consensus 14 ~GdGF~i~vP~kwn~skE~e~f~~~~~~Y~D~akp~~~~aRF~~~Dg~eNVSVvV~Pt~q 73 (235)
.|.+|+++.|-+-+= -+. .|..|..-|.. ++...+++-|-|.|+++
T Consensus 515 dg~~fk~~~p~g~~l-p~~-g~d~g~~ty~a------------p~~~~~~~~v~v~p~s~ 560 (778)
T KOG0453|consen 515 DGKAFKLEPPIGDEL-PKK-GFDPGQDTYQA------------PPSSSSVVEVDVDPTSD 560 (778)
T ss_pred CcccccccCCcCCCC-ccc-ccCCCcccccC------------CCCCCCcceeecCCccc
Confidence 577888887766432 333 38777666776 44446667888888864
Done!