Query 037286
Match_columns 235
No_of_seqs 84 out of 86
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 18:14:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037286.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037286hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v2b_A 23-kDa polypeptide of p 100.0 1.6E-36 5.6E-41 252.7 10.9 136 3-163 2-167 (177)
2 2xb3_A PSBP protein; photosynt 100.0 1.3E-30 4.3E-35 209.9 10.5 134 3-163 1-155 (165)
3 2lnj_A SLL1418 protein, putati 99.9 3.2E-30 1.1E-34 210.5 0.0 139 5-168 9-164 (170)
4 1tu1_A Hypothetical protein PA 84.2 4.2 0.00014 31.8 7.7 35 129-163 98-132 (148)
5 4exr_A Putative lipoprotein; Y 45.2 74 0.0025 25.9 7.3 59 89-151 33-93 (174)
6 2ysi_A Transcription elongatio 43.8 15 0.00052 23.6 2.4 23 138-160 16-38 (40)
7 1ywi_A Formin-binding protein 42.2 13 0.00046 23.9 1.9 21 138-158 18-38 (41)
8 1e0l_A Formin binding protein; 39.3 17 0.00057 22.8 2.0 24 138-161 12-35 (37)
9 4exr_A Putative lipoprotein; Y 39.1 88 0.003 25.4 6.9 55 87-145 113-168 (174)
10 1e0n_A Hypothetical protein; Y 34.6 15 0.00052 22.0 1.2 20 139-158 7-26 (27)
11 2dk1_A WW domain-binding prote 21.4 28 0.00095 23.6 0.7 24 139-162 14-37 (50)
No 1
>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2
Probab=100.00 E-value=1.6e-36 Score=252.71 Aligned_cols=136 Identities=23% Similarity=0.395 Sum_probs=113.1
Q ss_pred ccccccceeeeecCceeEecCCCCCCCCCCccCCCcccccCCCCCCcceeeeecCCCCceEEEEEEEeCCcccccccccc
Q 037286 3 GIANTKSWFQFYGDGFSIRVPPQFEDISEPEDYNAGLSLYGDKAKPKTFAARFATPDGSEVLSVVIRPSNQLKITFLEAQ 82 (235)
Q Consensus 3 ~~~Ntt~w~~y~GdGF~i~vP~kwn~skE~e~f~~~~~~Y~D~akp~~~~aRF~~~Dg~eNVSVvV~Pt~qlK~tFlekK 82 (235)
.+.++++|.+|.||||+|+||++|++++|.+ +|++..+|+| +.|..+||||+|+|++ ++
T Consensus 2 ~~~~~~g~~~y~~~gysf~yP~~W~~~~~~~-~~G~~~~f~d------------~~~~~~nvsV~v~p~~--------~~ 60 (177)
T 1v2b_A 2 KPKTDTDFQTYNGDGFKLQIPSKWNPNKEVE-YPGQVLRFED------------NFDATSNVIVAITPTD--------KK 60 (177)
T ss_dssp -----CCEEEEECSSEEEEEETTCEECCCCC-STTEEEEEEE------------TTEEEEEEEEEEEECS--------CS
T ss_pred CCCCCCCceEEecCCEEEEcCCCCccccccc-CCCceEEEeC------------CcCCCccEEEEEeCCC--------CC
Confidence 4678999999999999999999999999997 9888777777 6688999999999997 69
Q ss_pred CcccCCCHHHH----Hhhh-----cc-----CC--------ceEEeeeeeeeeeccCCeeeEEEEEEe-------CceEE
Q 037286 83 DITDFGTLKDA----AKIF-----VP-----GG--------ATLYSARTIKIKEEEGFKSYYFYEFGR-------DEQHV 133 (235)
Q Consensus 83 sItdfGSPeEv----a~l~-----vp-----~G--------akl~sAs~lev~~~~ggKtYY~yEfl~-------ggrH~ 133 (235)
+|+|||+|+|| ++.+ .| +| ++|++|+.++ .+|++||.|||.+ ++||+
T Consensus 61 si~dlGspe~~~~~v~~~l~~~~~~~~~~~~~gf~~~~~~~a~ll~a~~r~----~~G~~YY~~E~~~~~~~g~e~~rH~ 136 (177)
T 1v2b_A 61 SITDFGSPEQFLSQVDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSTAE----VGGKQYYYLSILTRTADGNEGGKHQ 136 (177)
T ss_dssp SGGGGCSHHHHHHHTGGGC------------------CCCEEEEEEEEEEE----ETTEEEEEEEEEEEC-----CCEEE
T ss_pred ChhHCCCHHHHHHHHHHHHHHHhhcccccccCCcccCcccceEEEEeEEEE----eCCeEEEEEEEEEecCCCCccccEE
Confidence 99999999996 4433 23 22 6788887774 4789999999996 38999
Q ss_pred EEEEEEeCCeEEEEccCCCCcchhhc-ccee
Q 037286 134 ALVAAINSGKRHLDAPMCPSLNRRLL-SGWL 163 (235)
Q Consensus 134 LitAaV~~GKLYtl~AqApekRW~k~-kd~L 163 (235)
|++|||++||||||++||||+||++. ++.|
T Consensus 137 l~~~tv~~gkLY~l~~~a~e~~W~k~~~~~l 167 (177)
T 1v2b_A 137 LVTATVNDGKLYICKAQAGDKRWFKGAKKFV 167 (177)
T ss_dssp EEEEEEETTEEEEEEEEEEGGGCSTTTTHHH
T ss_pred EEEEEEECCEEEEEEEecCHHHhhhhHHHHH
Confidence 99999999999999999999999994 8877
No 2
>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus}
Probab=99.97 E-value=1.3e-30 Score=209.88 Aligned_cols=134 Identities=17% Similarity=0.299 Sum_probs=109.4
Q ss_pred ccccccceeeee--cCceeEecCCCCCCCCCCccCCCcccccCCCCCCcceeeeecC-CCCceEEEEEEEeCCccccccc
Q 037286 3 GIANTKSWFQFY--GDGFSIRVPPQFEDISEPEDYNAGLSLYGDKAKPKTFAARFAT-PDGSEVLSVVIRPSNQLKITFL 79 (235)
Q Consensus 3 ~~~Ntt~w~~y~--GdGF~i~vP~kwn~skE~e~f~~~~~~Y~D~akp~~~~aRF~~-~Dg~eNVSVvV~Pt~qlK~tFl 79 (235)
|++++.+|.+|. ++||+|.||++|++... ++| ..+||.+ .+..+||+|+|.|+++
T Consensus 1 ~~~~~~g~~~~~D~~~gysf~~P~~W~~~~~----~~g------------~~v~f~d~~~~~~~v~V~v~p~~~------ 58 (165)
T 2xb3_A 1 GSSATSGLQAYVDSYDGYEFLYPRGWVQVQV----EDP------------VDVVFHDIIETTENVSVVVNTVAS------ 58 (165)
T ss_dssp -----CCEEEEEETTTTEEEEEETTEEEECC----CTT------------EEEEEEESSCTTSEEEEEEEECSS------
T ss_pred CCCCCCCceEEEcCCCCEEEEcCCCCeEecC----CCC------------ceEEEECcccCCceEEEEEecCCC------
Confidence 578899999999 99999999999998543 322 3567775 4779999999999983
Q ss_pred cccCcccCCCHHHHHhhhc-----cCC----ceEEeeeeeeeeeccCCeeeEEEEEEe---------CceEEEEEEEEeC
Q 037286 80 EAQDITDFGTLKDAAKIFV-----PGG----ATLYSARTIKIKEEEGFKSYYFYEFGR---------DEQHVALVAAINS 141 (235)
Q Consensus 80 ekKsItdfGSPeEva~l~v-----p~G----akl~sAs~lev~~~~ggKtYY~yEfl~---------ggrH~LitAaV~~ 141 (235)
.++|+|||+|+|+++.++ |+| ++|++|..+ +.+|++||.|||.+ +.||++++++|.+
T Consensus 59 -~~~l~~~G~~e~va~~l~~~~~~~~~~~~~~~l~~a~~r----~~~G~~yY~~Ey~~~~~~~~~~~~~rh~l~~~~v~~ 133 (165)
T 2xb3_A 59 -TKSLEELGSPEEVGDRLLRNIIAPSESGRSSALIAATSQ----KADDKTYYILEYAVTLPGDGNTAQQRHNLSSIAVSR 133 (165)
T ss_dssp -CCCSGGGCCHHHHHHHHHHHTTSCTTSSCEEEEEEEEEE----EETTEEEEEEEEEEECC-----CCEEEEEEEEEEET
T ss_pred -CCChHHcCCHHHHHHHHHHHhhcCCCCCcceEEEEeeee----ecCCceEEEEEEEEecCCCccCccccEEEEEEEEEC
Confidence 489999999999997444 343 678888776 34679999999994 4699999999999
Q ss_pred CeEEEEccCCCCcchhhcccee
Q 037286 142 GKRHLDAPMCPSLNRRLLSGWL 163 (235)
Q Consensus 142 GKLYtl~AqApekRW~k~kd~L 163 (235)
||||+|++||||+||.++++.|
T Consensus 134 g~lY~l~~sape~~w~~~~~~l 155 (165)
T 2xb3_A 134 GKVYTLSVSAPEERWPKVEDQF 155 (165)
T ss_dssp TEEEEEEEEEEGGGHHHHHHHH
T ss_pred CEEEEEEEecCHHHhHHHHHHH
Confidence 9999999999999999999887
No 3
>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP}
Probab=99.92 E-value=3.2e-30 Score=210.49 Aligned_cols=139 Identities=22% Similarity=0.262 Sum_probs=112.3
Q ss_pred ccccceeeee--cCceeEecCCCCCCCCCCccCCCcccccCCCCCCcceeeeecC-CCCceEEEEEEEeCCccccccccc
Q 037286 5 ANTKSWFQFY--GDGFSIRVPPQFEDISEPEDYNAGLSLYGDKAKPKTFAARFAT-PDGSEVLSVVIRPSNQLKITFLEA 81 (235)
Q Consensus 5 ~Ntt~w~~y~--GdGF~i~vP~kwn~skE~e~f~~~~~~Y~D~akp~~~~aRF~~-~Dg~eNVSVvV~Pt~qlK~tFlek 81 (235)
+...+|.+|. +|||+|.||++|++.. .+++ ..| ..++|.+ .+..+||+|+|+|+++ .
T Consensus 9 ~~~~g~~~y~d~~~gy~f~~P~gW~~~~----~~~~--~~g-------~~v~f~d~~~~~~nvsV~v~p~~~-------~ 68 (170)
T 2lnj_A 9 VGIASLQRYSDTKDGYEFLYPNGWIGVD----VKGA--SPG-------VDVVFRDLIERDENLSVIISEIPS-------D 68 (170)
Confidence 4567899999 9999999999999753 3320 001 2455664 5889999999999983 4
Q ss_pred cCcccCCCHHHHHhhhcc-----C----CceEEeeeeeeeeeccCCeeeEEEEEEe-----CceEEEEEEEEeCCeEEEE
Q 037286 82 QDITDFGTLKDAAKIFVP-----G----GATLYSARTIKIKEEEGFKSYYFYEFGR-----DEQHVALVAAINSGKRHLD 147 (235)
Q Consensus 82 KsItdfGSPeEva~l~vp-----~----Gakl~sAs~lev~~~~ggKtYY~yEfl~-----ggrH~LitAaV~~GKLYtl 147 (235)
++|+|||+|+|+++.+++ + .+++++|+.+ +.+|++||.|||.+ +.||++++++|++||||++
T Consensus 69 ~si~d~G~pe~va~~l~~~~~~~~~~~~~a~li~a~~~----~~~G~~yY~~Ey~~~~~~~~~rh~l~~~~v~~gklY~l 144 (170)
T 2lnj_A 69 KTLTDLGTATDVGYRFMKTVNDASQGDRQAELINAEAR----DEDGQVYYTLEYRVLVGDNVERHDLASVTTNRGKLITF 144 (170)
Confidence 899999999999996654 2 2678888776 35679999999996 3599999999999999999
Q ss_pred ccCCCCcchhhccceeeeEEe
Q 037286 148 APMCPSLNRRLLSGWLIHSVV 168 (235)
Q Consensus 148 ~AqApekRW~k~kd~L~~~~v 168 (235)
++|+||+||.+.++.| ..++
T Consensus 145 ~~~ape~~w~~~~~~l-~~v~ 164 (170)
T 2lnj_A 145 DLSTAEDRWDTVKSLF-DTVA 164 (170)
Confidence 9999999999999988 4443
No 4
>1tu1_A Hypothetical protein PA0094; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; 1.95A {Pseudomonas aeruginosa} SCOP: d.107.1.3
Probab=84.22 E-value=4.2 Score=31.81 Aligned_cols=35 Identities=3% Similarity=-0.189 Sum_probs=30.0
Q ss_pred CceEEEEEEEEeCCeEEEEccCCCCcchhhcccee
Q 037286 129 DEQHVALVAAINSGKRHLDAPMCPSLNRRLLSGWL 163 (235)
Q Consensus 129 ggrH~LitAaV~~GKLYtl~AqApekRW~k~kd~L 163 (235)
+..||..++.+..+++|++..++|..-|..-+..+
T Consensus 98 ~~~~Q~q~~~~~~~~~l~~t~t~~~~~~~~~~~~~ 132 (148)
T 1tu1_A 98 RDLMLRQVFIERRPAVLITTLTTTPADLPHHEPAW 132 (148)
T ss_dssp EEEEEEEEEECCSSSEEEEEEEECGGGHHHHHHHH
T ss_pred EEEEEEEEEEEECCeEEEEEEEcCCCCCHHHHHHH
Confidence 37899999999878999999999999988776554
No 5
>4exr_A Putative lipoprotein; YPEB domain dimer, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; 1.85A {Clostridium difficile}
Probab=45.20 E-value=74 Score=25.86 Aligned_cols=59 Identities=19% Similarity=0.069 Sum_probs=41.7
Q ss_pred CHHHHHhhhc--cCCceEEeeeeeeeeeccCCeeeEEEEEEeCceEEEEEEEEeCCeEEEEccCC
Q 037286 89 TLKDAAKIFV--PGGATLYSARTIKIKEEEGFKSYYFYEFGRDEQHVALVAAINSGKRHLDAPMC 151 (235)
Q Consensus 89 SPeEva~l~v--p~Gakl~sAs~lev~~~~ggKtYY~yEfl~ggrH~LitAaV~~GKLYtl~AqA 151 (235)
|++++...+. =||+++.++.. + .++|+..|..|+..+++.--+-+-...|++.--....
T Consensus 33 s~e~A~~~a~~~~pga~I~~iel-e---~~~G~~vYEVe~~~~g~e~ev~IDA~tG~Vl~~~~e~ 93 (174)
T 4exr_A 33 PYTDAINIFKDKYKDADIVDLSL-E---RDLNKFVYTVEGVDDNNEYKMKIDANTKDVLEDKTEK 93 (174)
T ss_dssp CHHHHHHHHHHHSTTCEEEEEEE-E---EETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEE
T ss_pred CHHHHHHHHHHHCCCCEEEEEEE-E---EeCCEEEEEEEEEECCEEEEEEEECCCCcEecccccc
Confidence 6777777544 25667766533 2 4567999999999877776777777889988776543
No 6
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1
Probab=43.84 E-value=15 Score=23.57 Aligned_cols=23 Identities=9% Similarity=-0.136 Sum_probs=19.4
Q ss_pred EEeCCeEEEEccCCCCcchhhcc
Q 037286 138 AINSGKRHLDAPMCPSLNRRLLS 160 (235)
Q Consensus 138 aV~~GKLYtl~AqApekRW~k~k 160 (235)
...+|+.|-.|+...+++|.+=.
T Consensus 16 ~~~~G~~YYyN~~T~eS~We~P~ 38 (40)
T 2ysi_A 16 KTPDGKVYYYNARTRESAWTKPD 38 (40)
T ss_dssp ECTTSCEEEEETTTCCEESSCCS
T ss_pred ECCCCCEEEEECCCCCEEeCCCC
Confidence 35789999999999999998643
No 7
>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A
Probab=42.22 E-value=13 Score=23.90 Aligned_cols=21 Identities=5% Similarity=-0.100 Sum_probs=18.2
Q ss_pred EEeCCeEEEEccCCCCcchhh
Q 037286 138 AINSGKRHLDAPMCPSLNRRL 158 (235)
Q Consensus 138 aV~~GKLYtl~AqApekRW~k 158 (235)
...+|+.|-.|+...+++|.+
T Consensus 18 ~~~~G~~YYyN~~T~eS~We~ 38 (41)
T 1ywi_A 18 KSPDGRTYYYNTETKQSTWEK 38 (41)
T ss_dssp EETTTEEEEEETTTTEEEESC
T ss_pred ECCCCCEEEEECCCCCEEeCC
Confidence 356899999999999999976
No 8
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A
Probab=39.30 E-value=17 Score=22.84 Aligned_cols=24 Identities=8% Similarity=-0.129 Sum_probs=19.4
Q ss_pred EEeCCeEEEEccCCCCcchhhccc
Q 037286 138 AINSGKRHLDAPMCPSLNRRLLSG 161 (235)
Q Consensus 138 aV~~GKLYtl~AqApekRW~k~kd 161 (235)
...+|+.|-.|+...+++|.+=.+
T Consensus 12 ~~~~G~~YYyN~~T~es~We~P~~ 35 (37)
T 1e0l_A 12 KTADGKTYYYNNRTLESTWEKPQE 35 (37)
T ss_dssp ECTTSCEEEEETTTTEEESSCCSS
T ss_pred ECCCCCEEEEECCCCCEEecCCCc
Confidence 346799999999999999987443
No 9
>4exr_A Putative lipoprotein; YPEB domain dimer, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; 1.85A {Clostridium difficile}
Probab=39.07 E-value=88 Score=25.43 Aligned_cols=55 Identities=11% Similarity=0.129 Sum_probs=34.9
Q ss_pred CCCHHHHHhhhc-cCCceEEeeeeeeeeeccCCeeeEEEEEEeCceEEEEEEEEeCCeEE
Q 037286 87 FGTLKDAAKIFV-PGGATLYSARTIKIKEEEGFKSYYFYEFGRDEQHVALVAAINSGKRH 145 (235)
Q Consensus 87 fGSPeEva~l~v-p~Gakl~sAs~lev~~~~ggKtYY~yEfl~ggrH~LitAaV~~GKLY 145 (235)
.=+++++..+-. -.+.++..+. ++ .++|+.+|..|+..+++-.-+..=+..|++.
T Consensus 113 ~is~~~A~~~Al~~~~G~v~e~e-Ld---~d~G~~vYevei~~~~~~~ev~IDA~tG~Il 168 (174)
T 4exr_A 113 IMTPQQAMEIALKEQNGIVKEWS-LD---KDLDVTFYKIRIDKDKNEYDIKVDSKKGTVL 168 (174)
T ss_dssp CCCHHHHHHHHHHHSCSEEEEEE-EE---EETTEEEEEEEEEETTEEEEEEEETTTCCEE
T ss_pred CcCHHHHHHHHHHhCCCeEEEEE-EE---EeCCEEEEEEEEEECCEEEEEEEECCCCCEe
Confidence 346777765311 1133566654 32 4567999999999987666666666777764
No 10
>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1
Probab=34.63 E-value=15 Score=22.01 Aligned_cols=20 Identities=5% Similarity=-0.144 Sum_probs=17.0
Q ss_pred EeCCeEEEEccCCCCcchhh
Q 037286 139 INSGKRHLDAPMCPSLNRRL 158 (235)
Q Consensus 139 V~~GKLYtl~AqApekRW~k 158 (235)
-+.|+.|-.++...+++|..
T Consensus 7 ~~~g~~YYyN~~T~~s~We~ 26 (27)
T 1e0n_A 7 HENGRPLYYNAEQKTKLHYP 26 (27)
T ss_dssp ESSSSEEEEETTTTEEESSC
T ss_pred CCCCCeEEEECCCCCEeccC
Confidence 46899999999999999963
No 11
>2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=21.45 E-value=28 Score=23.64 Aligned_cols=24 Identities=8% Similarity=0.051 Sum_probs=20.3
Q ss_pred EeCCeEEEEccCCCCcchhhccce
Q 037286 139 INSGKRHLDAPMCPSLNRRLLSGW 162 (235)
Q Consensus 139 V~~GKLYtl~AqApekRW~k~kd~ 162 (235)
..+|+.|-.|+...+++|.+=.+.
T Consensus 14 s~~G~~YYyN~~T~eS~WekP~~~ 37 (50)
T 2dk1_A 14 TSEGYHYYYDLISGASQWEKPEGF 37 (50)
T ss_dssp CSTTCCCEEESSSCCEESSCCTTC
T ss_pred CCCCCEEEEECCCCCEEeeCChhh
Confidence 468999999999999999886654
Done!