BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037287
(336 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q96JQ0|PCD16_HUMAN Protocadherin-16 OS=Homo sapiens GN=DCHS1 PE=2 SV=1
Length = 3298
Score = 32.7 bits (73), Expect = 3.8, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 160 ETGNCPIAKSYRAVSGVLPIVAKAFQPPPGLKLRCPPAPLPAKMLVIALMGMAVNVPLG 218
+ G+ P + S + + VLP A+ +PPP L R P AP+P + V A G+ LG
Sbjct: 1295 DQGSPPRSASLQLLVQVLP-SARLAEPPPDLAERDPAAPVPVVLTVTAAEGLRPGSLLG 1352
>sp|A4QEN6|Y1708_CORGB Probable transcriptional regulatory protein cgR_1708
OS=Corynebacterium glutamicum (strain R) GN=cgR_1708
PE=3 SV=1
Length = 251
Score = 32.7 bits (73), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 103 VATISLSAFSPGGPFSFGPFNDKWKKQQKKSEIPNNREPSSQNQNSSKHEASGNDWL 159
+ I ++A + GG S P D K+ KK+ +PN+ ++ + S + EA G DW+
Sbjct: 29 IKNIEVAARTGGGDPSANPTLDDMIKKAKKASVPNDNIERARKRGSGE-EAGGADWM 84
>sp|Q8NPZ8|Y1663_CORGL Probable transcriptional regulatory protein Cgl1663/cg1872
OS=Corynebacterium glutamicum (strain ATCC 13032 / DSM
20300 / JCM 1318 / LMG 3730 / NCIMB 10025) GN=Cgl1663
PE=3 SV=1
Length = 251
Score = 32.3 bits (72), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 103 VATISLSAFSPGGPFSFGPFNDKWKKQQKKSEIPNNREPSSQNQNSSKHEASGNDWL 159
+ I ++A + GG S P D K+ KK+ +PN+ ++ + S + EA G DW+
Sbjct: 29 IKNIEVAARTGGGDPSANPTLDDMIKKAKKASVPNDNIERARKRGSGE-EAGGADWM 84
>sp|Q8FPK2|Y1776_COREF Probable transcriptional regulatory protein CE1776
OS=Corynebacterium efficiens (strain DSM 44549 / YS-314
/ AJ 12310 / JCM 11189 / NBRC 100395) GN=CE1776 PE=3
SV=2
Length = 252
Score = 32.0 bits (71), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 103 VATISLSAFSPGGPFSFGPFNDKWKKQQKKSEIPNNREPSSQNQNSSKHEASGNDWL 159
V I ++A GG S P D K+ KK+ +PN+ ++ + S EA G DW+
Sbjct: 29 VKNIEVAARMGGGDPSANPTLDDMIKKAKKASVPNDNIERARKRGSG-EEAGGADWV 84
>sp|Q9FJH7|NRT23_ARATH High affinity nitrate transporter 2.3 OS=Arabidopsis thaliana
GN=NRT2.3 PE=1 SV=1
Length = 539
Score = 31.6 bits (70), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 13/101 (12%)
Query: 216 PLGVWKEHTRKFSLSW------FAAVHAAVPFIAMLRKSVVMPKEAMALTIGASILGQVI 269
PL K H R F L W F + AA P + ++R ++ + K IG + + V
Sbjct: 61 PLSFAKPHMRAFHLGWLSFFTCFISTFAAAPLVPIIRDNLDLTKT----DIGNAGVASVS 116
Query: 270 GSRAERQRLKAVAEREGVATQTDIAATVTG---YSPSQVNG 307
G+ R + AV + G T + +T +S S V G
Sbjct: 117 GAIFSRLAMGAVCDLLGARYGTAFSLMLTAPTVFSMSFVGG 157
>sp|P62034|Y1378_CORDI Probable transcriptional regulatory protein DIP1378
OS=Corynebacterium diphtheriae (strain ATCC 700971 /
NCTC 13129 / Biotype gravis) GN=DIP1378 PE=3 SV=1
Length = 250
Score = 31.6 bits (70), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 103 VATISLSAFSPGGPFSFGPFNDKWKKQQKKSEIPNNREPSSQNQNSSKHEASGNDW 158
+ I ++A + GG S P D K+ KK+ +PN+ ++ + S EA G DW
Sbjct: 29 IKNIEVAARTGGGDPSANPTLDDMIKKAKKASVPNDNIERARKRGSG-EEAGGADW 83
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.132 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 132,055,607
Number of Sequences: 539616
Number of extensions: 5849699
Number of successful extensions: 16187
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 16173
Number of HSP's gapped (non-prelim): 40
length of query: 336
length of database: 191,569,459
effective HSP length: 118
effective length of query: 218
effective length of database: 127,894,771
effective search space: 27881060078
effective search space used: 27881060078
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)