Query 037287
Match_columns 336
No_of_seqs 64 out of 66
Neff 2.4
Searched_HMMs 46136
Date Fri Mar 29 10:42:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037287.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037287hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03663 conserved hypothetic 67.7 11 0.00023 37.7 5.5 63 218-280 285-350 (439)
2 PF12273 RCR: Chitin synthesis 57.7 9.6 0.00021 31.8 2.7 28 253-280 2-29 (130)
3 PRK10782 DL-methionine transpo 34.9 1.4E+02 0.0031 25.9 6.4 39 207-245 24-72 (217)
4 COG2011 AbcD ABC-type metal io 33.2 68 0.0015 30.8 4.4 57 208-264 30-107 (222)
5 COG1183 PssA Phosphatidylserin 28.9 1.1E+02 0.0024 29.0 5.0 60 211-272 168-227 (234)
6 PF09605 Trep_Strep: Hypotheti 28.2 1.3E+02 0.0029 26.8 5.2 65 204-273 35-99 (186)
7 PF04895 DUF651: Archaeal prot 22.1 21 0.00045 30.6 -0.9 14 213-226 46-61 (110)
8 TIGR02185 Trep_Strep conserved 19.6 3.5E+02 0.0076 24.3 6.2 61 205-270 38-98 (189)
9 PRK04081 hypothetical protein; 19.1 81 0.0018 30.0 2.2 22 254-275 125-146 (207)
10 TIGR00844 c_cpa1 na(+)/h(+) an 18.3 2E+02 0.0044 32.0 5.2 60 203-263 78-139 (810)
No 1
>TIGR03663 conserved hypothetical protein TIGR03663. Members of this protein family, uncommon and rather sporadically distributed, are found almost always in the same genomes as members of family TIGR03662, and frequently as a nearby gene. Members show some N-terminal sequence similarity with Pfam family pfam02366, dolichyl-phosphate-mannose-protein mannosyltransferase. The few invariant residues in this family, found toward the N-terminus, include a dipeptide DE, a tripeptide HGP, and two different Arg residues. Up to three members may be found in a genome. The function is unknown.
Probab=67.69 E-value=11 Score=37.75 Aligned_cols=63 Identities=17% Similarity=0.100 Sum_probs=48.9
Q ss_pred hhhhccc---cccchhHHHHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 037287 218 GVWKEHT---RKFSLSWFAAVHAAVPFIAMLRKSVVMPKEAMALTIGASILGQVIGSRAERQRLKA 280 (336)
Q Consensus 218 GyWRe~t---kKFS~~WFlAVHapVPfIa~LRi~~glpw~~Ip~tIaAailGQ~iG~Rl~R~R~k~ 280 (336)
++|++.+ ++.+..-|+.+=.-+-++++.=...-+||..+|+.+.-+++.-.--+++.|++.++
T Consensus 285 ~~~~~r~~~~~~~~~~~f~~~W~~~~~v~ys~~~~K~Pwy~l~~~~PlAll~g~~l~~~~~~~~~~ 350 (439)
T TIGR03663 285 GFLANRYATDKRRSFFLFACYWTLASLLFYSYIQEKVPWLVVHILVPLAILAAVGLSAVVLTGKKA 350 (439)
T ss_pred HHHHHHhcccCcchHHHHHHHHHHHHHHHHhhcccCCcchhHHHHHhHHHHHHHHHHHHHHhhhhh
Confidence 4677654 66777777777777778888878889999999999988888877777777766654
No 2
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=57.70 E-value=9.6 Score=31.79 Aligned_cols=28 Identities=21% Similarity=0.067 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 037287 253 KEAMALTIGASILGQVIGSRAERQRLKA 280 (336)
Q Consensus 253 w~~Ip~tIaAailGQ~iG~Rl~R~R~k~ 280 (336)
|.++.++|++.+|-=+++.+..|||.|.
T Consensus 2 W~l~~iii~~i~l~~~~~~~~~rRR~r~ 29 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLFLFYCHNRRRRRR 29 (130)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6778888888888888888888888876
No 3
>PRK10782 DL-methionine transporter permease subunit; Provisional
Probab=34.91 E-value=1.4e+02 Score=25.87 Aligned_cols=39 Identities=31% Similarity=0.587 Sum_probs=28.4
Q ss_pred HHHHHHhhccchhhhcccc----------ccchhHHHHhhhhhhHHHHH
Q 037287 207 ALMGMAVNVPLGVWKEHTR----------KFSLSWFAAVHAAVPFIAML 245 (336)
Q Consensus 207 ~~l~~llNIPfGyWRe~tk----------KFS~~WFlAVHapVPfIa~L 245 (336)
.++++++-+|+||+....+ +.-+..++.+-.+||.++.+
T Consensus 24 ~~l~~~ig~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~iP~~vll 72 (217)
T PRK10782 24 GFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTLSALVNIFRSIPFIILL 72 (217)
T ss_pred HHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3688889999999986443 23455566778899998764
No 4
>COG2011 AbcD ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]
Probab=33.18 E-value=68 Score=30.80 Aligned_cols=57 Identities=33% Similarity=0.401 Sum_probs=39.4
Q ss_pred HHHHHhhccchhhhcccccc----------chhHHHHhhhhhhHHHHH-------HhhcCCChh----HHHHHHHHHH
Q 037287 208 LMGMAVNVPLGVWKEHTRKF----------SLSWFAAVHAAVPFIAML-------RKSVVMPKE----AMALTIGASI 264 (336)
Q Consensus 208 ~l~~llNIPfGyWRe~tkKF----------S~~WFlAVHapVPfIa~L-------Ri~~glpw~----~Ip~tIaAai 264 (336)
++++++-+|+|.+=--|+|= -+.+.+-+--++|||+.+ |.-+|-+-+ ..|++|+|.-
T Consensus 30 ~~~~~iGlplGvlL~~T~~g~i~~n~~~~~il~~ivNi~Rs~PFiILlv~liP~Tr~ivGTsiG~~AAivPL~i~a~P 107 (222)
T COG2011 30 LFAFLIGLPLGVLLFLTGPGGLLENKLLYRILSAIVNILRSIPFIILLVALIPLTRLIVGTSIGTTAAIVPLTIGAAP 107 (222)
T ss_pred HHHHHHHHhhhheEEEcCCCcccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcccccchhHhhhHHHHHH
Confidence 78899999999886555553 345666777899999987 444444333 2777777654
No 5
>COG1183 PssA Phosphatidylserine synthase [Lipid metabolism]
Probab=28.88 E-value=1.1e+02 Score=28.97 Aligned_cols=60 Identities=15% Similarity=0.139 Sum_probs=47.6
Q ss_pred HHhhccchhhhccccccchhHHHHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHHHHhhhhH
Q 037287 211 MAVNVPLGVWKEHTRKFSLSWFAAVHAAVPFIAMLRKSVVMPKEAMALTIGASILGQVIGSR 272 (336)
Q Consensus 211 ~llNIPfGyWRe~tkKFS~~WFlAVHapVPfIa~LRi~~glpw~~Ip~tIaAailGQ~iG~R 272 (336)
|+-|||+.=+|....-=...|.+..|..+. .+.....-.+|..+.++...+.+.-.+..+
T Consensus 168 mvs~i~~~~~k~~~~~v~~~~~~~~~~~l~--~~~~~~~~~~~~~l~~~~~~y~~~~~~~~~ 227 (234)
T COG1183 168 MVSNIPFPSLKKLNALVRVVLLLAGILLLA--LLALVLILYPWLLLLVIASGYLLSIPIRVR 227 (234)
T ss_pred heeccccCCccccchhccHHHHHHHHHHHH--HHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 344999988888877778889999888876 445555667888999999999888877777
No 6
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=28.21 E-value=1.3e+02 Score=26.76 Aligned_cols=65 Identities=6% Similarity=-0.005 Sum_probs=48.6
Q ss_pred HHHHHHHHHhhccchhhhccccccchhHHHHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHHHHhhhhHH
Q 037287 204 LVIALMGMAVNVPLGVWKEHTRKFSLSWFAAVHAAVPFIAMLRKSVVMPKEAMALTIGASILGQVIGSRA 273 (336)
Q Consensus 204 l~I~~l~~llNIPfGyWRe~tkKFS~~WFlAVHapVPfIa~LRi~~glpw~~Ip~tIaAailGQ~iG~Rl 273 (336)
+.-++.+++..+++=+....++|+ |-+.+...|.-+++ .-.|++|..++..+.+.+++-+|=..-
T Consensus 35 ~~~~i~ali~g~vyml~~~KV~K~---G~~~i~~~i~gl~~--~~~G~~~~~~~~~iv~gliAElI~~~g 99 (186)
T PF09605_consen 35 FMPAIAALICGIVYMLMVAKVPKR---GAFLIMGIIMGLIF--FLMGHGWPMLIVCIVGGLIAELILKKG 99 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCch---HHHHHHHHHHHHHH--HHHhhhHHHHHHHHHHHHHHHHHHHhC
Confidence 334466667778888888899987 56666666666655 567888999999999999999887433
No 7
>PF04895 DUF651: Archaeal protein of unknown function (DUF651); InterPro: IPR006979 This conserved region is found in the C-terminal region of a number of conserved archaeal proteins of unknown function.
Probab=22.12 E-value=21 Score=30.57 Aligned_cols=14 Identities=57% Similarity=1.161 Sum_probs=11.4
Q ss_pred hhccchhh--hccccc
Q 037287 213 VNVPLGVW--KEHTRK 226 (336)
Q Consensus 213 lNIPfGyW--Re~tkK 226 (336)
-++|+|.| ||++|+
T Consensus 46 Y~~PlGvW~VRE~vR~ 61 (110)
T PF04895_consen 46 YYAPLGVWQVRENVRK 61 (110)
T ss_pred ceeeeeeehHHHHHHH
Confidence 37999999 788876
No 8
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=19.64 E-value=3.5e+02 Score=24.27 Aligned_cols=61 Identities=10% Similarity=0.001 Sum_probs=44.1
Q ss_pred HHHHHHHHhhccchhhhccccccchhHHHHhhhhhhHHHHHHhhcCCChhHHHHHHHHHHHHHhhh
Q 037287 205 VIALMGMAVNVPLGVWKEHTRKFSLSWFAAVHAAVPFIAMLRKSVVMPKEAMALTIGASILGQVIG 270 (336)
Q Consensus 205 ~I~~l~~llNIPfGyWRe~tkKFS~~WFlAVHapVPfIa~LRi~~glpw~~Ip~tIaAailGQ~iG 270 (336)
.-++.+++.-+|+=+.-..++|| |.+.+-.-|.-+.+ ...|..|..++..+.+.+++-++=
T Consensus 38 ~p~i~al~~g~vyml~~~KV~K~---G~~~i~~~i~gl~~--~~~G~~~~~~~~~ii~gliaeli~ 98 (189)
T TIGR02185 38 SPGITAFLVGIIFFLMVAKVPKR---GVIFIFGILLGLLF--FLMGMYWPMIISSIIGGLLADIIA 98 (189)
T ss_pred HHHHHHHHHhHHHhhhhhhcCCc---cHHHHHHHHHHHHH--HHHcccHHHHHHHHHHHHHHHHHH
Confidence 33466667777888888888886 55666665555544 378888888888888888888774
No 9
>PRK04081 hypothetical protein; Provisional
Probab=19.08 E-value=81 Score=30.05 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHhhhhHHHH
Q 037287 254 EAMALTIGASILGQVIGSRAER 275 (336)
Q Consensus 254 ~~Ip~tIaAailGQ~iG~Rl~R 275 (336)
.+|+--++.|+||-|||.+|..
T Consensus 125 ~~lLasaAGaiLGswIGnkLfN 146 (207)
T PRK04081 125 GTILASAAGAILGSWIGNKLFN 146 (207)
T ss_pred HHHHHHHHHHHHhhhhhHhhhc
Confidence 4688899999999999999954
No 10
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=18.31 E-value=2e+02 Score=32.05 Aligned_cols=60 Identities=17% Similarity=0.238 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhhccchhhhccccccchhHHHHhhhhhhHHHHHHhhc--CCChhHHHHHHHHH
Q 037287 203 MLVIALMGMAVNVPLGVWKEHTRKFSLSWFAAVHAAVPFIAMLRKSV--VMPKEAMALTIGAS 263 (336)
Q Consensus 203 ~l~I~~l~~llNIPfGyWRe~tkKFS~~WFlAVHapVPfIa~LRi~~--glpw~~Ip~tIaAa 263 (336)
.|+|.+++..+++|++|+|.+-+---.--++.+=+.+-+++.+=.++ |++|.. .+++||.
T Consensus 78 vL~I~LFa~Gl~L~~~~Lrr~wrsV~rLl~~~M~lT~livAL~a~~Li~GL~~~~-ALLLGAI 139 (810)
T TIGR00844 78 LLCLQVFAVSVELPRKYMLKHWVSVTMLLVPVMTSGWLVIALFVWILVPGLNFPA-SLLMGAC 139 (810)
T ss_pred HHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH-HHHHHhh
Confidence 34555778888999999999876554444445555566666654433 888753 4455543
Done!