Query 037287
Match_columns 336
No_of_seqs 64 out of 66
Neff 2.4
Searched_HMMs 29240
Date Mon Mar 25 18:15:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037287.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037287hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pco_A Latarcin-1, LTC-1; cont 25.4 8.6 0.00029 25.2 -1.1 12 217-228 4-15 (26)
2 1h7d_A Aminolevulinic acid syn 13.8 52 0.0018 23.9 0.7 10 22-31 8-17 (49)
3 1d2t_A Acid phosphatase; all a 9.7 4.3E+02 0.015 22.5 5.3 45 240-286 177-225 (231)
4 2ipb_A PHON protein, class A n 8.8 4.8E+02 0.017 22.1 5.2 47 239-287 164-214 (230)
5 3tui_A D-methionine transport 7.9 7.6E+02 0.026 19.1 5.8 36 208-243 25-70 (217)
6 3u88_M Histone-lysine N-methyl 7.6 1.1E+02 0.0038 23.9 0.5 14 55-68 27-40 (75)
7 4aw6_A CAAX prenyl protease 1 7.1 1.2E+03 0.039 22.9 7.6 20 205-224 129-148 (482)
8 2dmp_A Zinc fingers and homeob 7.1 3.2E+02 0.011 20.4 2.9 15 120-134 59-73 (89)
9 1rf3_B 24-residue peptide from 6.8 2.6E+02 0.0089 18.1 1.9 13 43-55 1-13 (26)
10 2lx0_A Membrane fusion protein 6.8 2E+02 0.0068 19.3 1.4 17 205-221 9-25 (32)
No 1
>2pco_A Latarcin-1, LTC-1; continuous helix, toxin; NMR {Synthetic}
Probab=25.37 E-value=8.6 Score=25.15 Aligned_cols=12 Identities=25% Similarity=0.844 Sum_probs=10.5
Q ss_pred chhhhccccccc
Q 037287 217 LGVWKEHTRKFS 228 (336)
Q Consensus 217 fGyWRe~tkKFS 228 (336)
||.|||..+||-
T Consensus 4 fgk~keklKkf~ 15 (26)
T 2pco_A 4 SGMWRRKLKKLR 15 (26)
T ss_dssp CSCSHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 799999999983
No 2
>1h7d_A Aminolevulinic acid synthase 2, erythroid; acyltransferase, ALAS, presequence, structure; NMR {Mus musculus} SCOP: j.88.1.1 PDB: 1h7j_A
Probab=13.82 E-value=52 Score=23.91 Aligned_cols=10 Identities=30% Similarity=0.663 Sum_probs=7.5
Q ss_pred CccCcccccC
Q 037287 22 ILKCPFLRNI 31 (336)
Q Consensus 22 i~rCPFLrNI 31 (336)
+.+||||...
T Consensus 8 l~~CPFL~R~ 17 (49)
T 1h7d_A 8 LRSCPVLSQG 17 (49)
T ss_dssp CCSCCCCSSC
T ss_pred hccCCchhcC
Confidence 5689999654
No 3
>1d2t_A Acid phosphatase; all alpha, hydrolase; 1.90A {Escherichia blattae} SCOP: a.111.1.1 PDB: 1eoi_A 1iw8_A
Probab=9.73 E-value=4.3e+02 Score=22.45 Aligned_cols=45 Identities=13% Similarity=-0.053 Sum_probs=26.9
Q ss_pred hHHHHHHhhcCCChhHHHHHHHHHHHHHhhhhHHH----HHHHHHHHhhcc
Q 037287 240 PFIAMLRKSVVMPKEAMALTIGASILGQVIGSRAE----RQRLKAVAEREG 286 (336)
Q Consensus 240 PfIa~LRi~~glpw~~Ip~tIaAailGQ~iG~Rl~----R~R~k~~a~~~~ 286 (336)
-.|++-|+++|.-|-. =.+++.++|..++..+. -+++-+.|+.|+
T Consensus 177 ~~v~~SRvylGvH~ps--DVlaG~~lG~~~~~~~~~~~~~~~~~~~a~~e~ 225 (231)
T 1d2t_A 177 YELGQSRVICGYHWQS--DVDAARVVGSAVVATLHTNPAFQQQLQKAKAEF 225 (231)
T ss_dssp HHHHHHHHHHTSSCHH--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcCHH--HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 4789999999999875 12344555555544433 344445555554
No 4
>2ipb_A PHON protein, class A nonspecific acid phosphatase PHON; class-A bacterial non-specific acid phosphatase; 2.23A {Salmonella typhimurium} PDB: 2a96_A 2akc_A
Probab=8.79 E-value=4.8e+02 Score=22.06 Aligned_cols=47 Identities=15% Similarity=-0.147 Sum_probs=25.9
Q ss_pred hhHHHHHHhhcCCChhHHHHHHHHHHHHHhhhhHH----HHHHHHHHHhhccc
Q 037287 239 VPFIAMLRKSVVMPKEAMALTIGASILGQVIGSRA----ERQRLKAVAEREGV 287 (336)
Q Consensus 239 VPfIa~LRi~~glpw~~Ip~tIaAailGQ~iG~Rl----~R~R~k~~a~~~~~ 287 (336)
.-+|.+-|+++|+-|-. =.+++.++|-.++..+ .-++.-+.|..|+.
T Consensus 164 a~~v~~SRv~~G~H~~s--DVlaG~~lG~~~~~~~~~~~~~~~~~~~a~~e~~ 214 (230)
T 2ipb_A 164 GWEFGQSRVICGAHWQS--DVDAGRYVGAVEFARLQTIPAFQKSLAKVREELN 214 (230)
T ss_dssp HHHHHHHHHHHTSSCHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcccHH--HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 35789999999999875 1233334444433332 23344444444443
No 5
>3tui_A D-methionine transport system permease protein ME; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} SCOP: f.58.1.1 PDB: 3dhw_A* 3tuj_A 3tuz_A*
Probab=7.92 E-value=7.6e+02 Score=19.12 Aligned_cols=36 Identities=31% Similarity=0.635 Sum_probs=22.8
Q ss_pred HHHHHhhccchhhhcccc--------cc--chhHHHHhhhhhhHHH
Q 037287 208 LMGMAVNVPLGVWKEHTR--------KF--SLSWFAAVHAAVPFIA 243 (336)
Q Consensus 208 ~l~~llNIPfGyWRe~tk--------KF--S~~WFlAVHapVPfIa 243 (336)
++++++-+|+||+-...+ ++ .+..+..+=.+||.++
T Consensus 25 ~l~~~lg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iP~~~ 70 (217)
T 3tui_A 25 FFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPFII 70 (217)
T ss_dssp HHHHHHHHHHHHHHHHTSTTSSSCCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 677888899999865543 11 2344555556777763
No 6
>3u88_M Histone-lysine N-methyltransferase MLL; menin, MEN1, MLL, JUND, ledgf, TPR, transcription; HET: CHD 0BR GGB; 3.00A {Homo sapiens}
Probab=7.60 E-value=1.1e+02 Score=23.90 Aligned_cols=14 Identities=29% Similarity=0.738 Sum_probs=10.3
Q ss_pred cccCCCCccchhhh
Q 037287 55 IFEDGPNFGMAFKL 68 (336)
Q Consensus 55 ifeDGp~Fd~af~l 68 (336)
++--|||||.|..+
T Consensus 27 llgvgpGFDAALqv 40 (75)
T 3u88_M 27 LLRVGPGFDAALQV 40 (75)
T ss_dssp CCEECCCCCHHHHH
T ss_pred HHccCcChhHHHHH
Confidence 34679999988654
No 7
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} PDB: 2ypt_A
Probab=7.07 E-value=1.2e+03 Score=22.87 Aligned_cols=20 Identities=10% Similarity=0.365 Sum_probs=15.4
Q ss_pred HHHHHHHHhhccchhhhccc
Q 037287 205 VIALMGMAVNVPLGVWKEHT 224 (336)
Q Consensus 205 ~I~~l~~llNIPfGyWRe~t 224 (336)
++.++..++++||.|++..+
T Consensus 129 ~~~l~~~l~~LP~~~Y~tfv 148 (482)
T 4aw6_A 129 LATLFSALAGLPWSLYNTFV 148 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhHHHHHHhee
Confidence 33467788999999997754
No 8
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=7.06 E-value=3.2e+02 Score=20.36 Aligned_cols=15 Identities=13% Similarity=0.251 Sum_probs=9.6
Q ss_pred cccchHHHHhhcCCC
Q 037287 120 GPFNDKWKKQQKKSE 134 (336)
Q Consensus 120 ~~F~~k~~~q~~~~~ 134 (336)
.||.+++.|.+++++
T Consensus 59 vWFqNRR~k~r~~~~ 73 (89)
T 2dmp_A 59 SWFSERRKLRDSMEQ 73 (89)
T ss_dssp HHHHHHHHHHHTSCS
T ss_pred HhhHhHHHHHHHHhH
Confidence 378777766665554
No 9
>1rf3_B 24-residue peptide from lymphotoxin-B receptor; CD40, NF-KB signaling, LTBR, TNF receptor, TRAF3 crystallography, signaling protein; 3.50A {Homo sapiens} SCOP: j.116.1.1
Probab=6.82 E-value=2.6e+02 Score=18.13 Aligned_cols=13 Identities=46% Similarity=1.114 Sum_probs=9.3
Q ss_pred CCCCCCCCCCCCc
Q 037287 43 NFPLPERGAKGPI 55 (336)
Q Consensus 43 ~~p~p~~~~kgPi 55 (336)
++|+|..|+-||-
T Consensus 1 pyp~peeg~p~p~ 13 (26)
T 1rf3_B 1 PYPIPEEGDPGPP 13 (26)
T ss_dssp CCCCCCCCCSSCC
T ss_pred CCCCCcCCCCCCc
Confidence 3688888887764
No 10
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=6.82 E-value=2e+02 Score=19.29 Aligned_cols=17 Identities=18% Similarity=0.595 Sum_probs=11.3
Q ss_pred HHHHHHHHhhccchhhh
Q 037287 205 VIALMGMAVNVPLGVWK 221 (336)
Q Consensus 205 ~I~~l~~llNIPfGyWR 221 (336)
+.++++++.=+-||+|-
T Consensus 9 iaglvalltflafgfwl 25 (32)
T 2lx0_A 9 IAGLVALLTFLAFGFWL 25 (32)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33466666667799984
Done!