Query 037287
Match_columns 336
No_of_seqs 64 out of 66
Neff 2.4
Searched_HMMs 13730
Date Mon Mar 25 18:15:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037287.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/037287hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3dhwa1 f.58.1.1 (A:6-208) D-m 47.3 52 0.0038 24.7 8.7 75 207-281 19-110 (203)
2 d1ox0a2 c.95.1.1 (A:252-409) B 16.6 21 0.0015 27.3 1.1 15 101-115 133-147 (158)
3 d1zr9a1 g.37.1.4 (A:28-94) Zin 15.4 38 0.0027 23.9 2.1 32 269-300 35-66 (67)
4 d1fcda2 c.3.1.5 (A:115-255) Fl 10.3 32 0.0023 25.8 0.4 16 184-200 38-53 (141)
5 d1sroa_ b.40.4.5 (A:) S1 RNA-b 10.1 58 0.0042 21.9 1.7 26 62-87 19-44 (76)
6 d1e5ma2 c.95.1.1 (A:256-416) B 9.5 62 0.0045 24.5 1.9 11 105-115 140-150 (161)
7 d2b78a2 c.66.1.51 (A:69-385) H 8.9 26 0.0019 29.7 -0.7 12 63-74 26-38 (317)
8 d1j3na2 c.95.1.1 (A:250-408) B 8.1 93 0.0068 23.3 2.4 10 106-115 140-149 (159)
9 d2pila_ d.24.1.1 (A:) Pilin Gc 8.1 78 0.0056 21.6 1.7 14 202-215 6-19 (158)
10 d2ahme1 d.302.1.1 (E:43-197) N 7.9 43 0.0031 27.4 0.3 11 71-81 73-83 (155)
No 1
>d3dhwa1 f.58.1.1 (A:6-208) D-methionine transport system permease protein MetI {Escherichia coli [TaxId: 562]}
Probab=47.30 E-value=52 Score=24.67 Aligned_cols=75 Identities=20% Similarity=0.264 Sum_probs=42.6
Q ss_pred HHHHHHhhccchhhhccccccc----------hhHHHHhhhhhhHHHH-------HHhhcCCChhHHHHHHHHHHHHHhh
Q 037287 207 ALMGMAVNVPLGVWKEHTRKFS----------LSWFAAVHAAVPFIAM-------LRKSVVMPKEAMALTIGASILGQVI 269 (336)
Q Consensus 207 ~~l~~llNIPfGyWRe~tkKFS----------~~WFlAVHapVPfIa~-------LRi~~glpw~~Ip~tIaAailGQ~i 269 (336)
.++++++-+|+|++....++-. +..+..+=.++|.++. .+...+.+.+..+..++-.+.....
T Consensus 19 ~~i~~ilg~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~p~ 98 (203)
T d3dhwa1 19 GFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPFIILLVWMIPFTRVIVGTSIGLQAAIVPLTVGAAPF 98 (203)
T ss_dssp HHHHHHTTGGGGGGGGGGTTCSSSCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTCCSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccHHHHHHHHHHHhhHH
Confidence 3688899999999976543221 2233333335554443 3445555555555555555555555
Q ss_pred hhHHHHHHHHHH
Q 037287 270 GSRAERQRLKAV 281 (336)
Q Consensus 270 G~Rl~R~R~k~~ 281 (336)
-.|.-+...+++
T Consensus 99 ~~~~~~~~l~~i 110 (203)
T d3dhwa1 99 IARMVENALLEI 110 (203)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHHhc
Confidence 566666555554
No 2
>d1ox0a2 c.95.1.1 (A:252-409) Beta-ketoacyl-ACP synthase II {Streptococcus pneumoniae [TaxId: 1313]}
Probab=16.62 E-value=21 Score=27.30 Aligned_cols=15 Identities=20% Similarity=0.366 Sum_probs=9.8
Q ss_pred cccceeeeccCCCCC
Q 037287 101 TKVATISLSAFSPGG 115 (336)
Q Consensus 101 a~aatislS~Fg~gg 115 (336)
...-..-.+|||.||
T Consensus 133 ~~~~~a~~nsfGfGG 147 (158)
T d1ox0a2 133 KEIPYAISNTFGFGG 147 (158)
T ss_dssp CCCSEEEEEEEETTT
T ss_pred CCCCEEEEeCcCCCc
Confidence 334445668898876
No 3
>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.35 E-value=38 Score=23.88 Aligned_cols=32 Identities=22% Similarity=0.330 Sum_probs=19.1
Q ss_pred hhhHHHHHHHHHHHhhcccccccccccccccc
Q 037287 269 IGSRAERQRLKAVAEREGVATQTDIAATVTGY 300 (336)
Q Consensus 269 iG~Rl~R~R~k~~a~~~~~~~~~d~~~~~~~~ 300 (336)
.-++-|++|+|++-...-+..+++.++.+++|
T Consensus 35 ~ksKkHKrrvk~L~~~p~t~~eae~AaG~Gs~ 66 (67)
T d1zr9a1 35 FRSKDHKKRLKQLSVEPYSQEEAERAAGMGSY 66 (67)
T ss_dssp TTCHHHHHHHHHHTSCSSCTTTSSCSCCCCCC
T ss_pred HcccHHHHHHHHhccCcCCHHHHHHhcCCcCC
Confidence 34788999999985432233344445555544
No 4
>d1fcda2 c.3.1.5 (A:115-255) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}
Probab=10.30 E-value=32 Score=25.79 Aligned_cols=16 Identities=44% Similarity=1.159 Sum_probs=11.3
Q ss_pred cCCCCCCcccCCCCCcc
Q 037287 184 FQPPPGLKLRCPPAPLP 200 (336)
Q Consensus 184 ~~pP~gmk~~CP~apLP 200 (336)
+.. +++.+|||+||.=
T Consensus 38 ~t~-p~~P~kCpgAP~e 53 (141)
T d1fcda2 38 IAP-PAAPFRCPPGPYE 53 (141)
T ss_dssp EEC-CCSSCSSTTHHHH
T ss_pred Eec-CCCCccCCchHHH
Confidence 444 3578999999653
No 5
>d1sroa_ b.40.4.5 (A:) S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase {Escherichia coli [TaxId: 562]}
Probab=10.09 E-value=58 Score=21.91 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=19.9
Q ss_pred ccchhhhhccCCCeeeCCCCCCCCCC
Q 037287 62 FGMAFKLFHGKDGVVPLSGRSYSHND 87 (336)
Q Consensus 62 Fd~af~lFHG~dGvvPLs~~s~~~~~ 87 (336)
|..-..|..|.+|.||+|+-|..+.+
T Consensus 19 ~G~fV~l~~~~~Glv~~sels~~~~~ 44 (76)
T d1sroa_ 19 FGAFVAIGGGKEGLVHISQIADKRVE 44 (76)
T ss_dssp TEEEEECSSSCCCBCCTTSSCSSCCS
T ss_pred cEEEEEeCCCCEEEEEhHHhCccccC
Confidence 44445667899999999999987654
No 6
>d1e5ma2 c.95.1.1 (A:256-416) Beta-ketoacyl-ACP synthase II {Synechocystis sp. [TaxId: 1143]}
Probab=9.53 E-value=62 Score=24.46 Aligned_cols=11 Identities=27% Similarity=0.419 Sum_probs=7.9
Q ss_pred eeeeccCCCCC
Q 037287 105 TISLSAFSPGG 115 (336)
Q Consensus 105 tislS~Fg~gg 115 (336)
..-.+|||.||
T Consensus 140 ~a~~nsfGfGG 150 (161)
T d1e5ma2 140 VALSNSFGFGG 150 (161)
T ss_dssp EEEEEEEETTT
T ss_pred EEEEeCcCcCc
Confidence 44568898877
No 7
>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}
Probab=8.88 E-value=26 Score=29.74 Aligned_cols=12 Identities=33% Similarity=0.703 Sum_probs=10.3
Q ss_pred cchhhhhccC-CC
Q 037287 63 GMAFKLFHGK-DG 74 (336)
Q Consensus 63 d~af~lFHG~-dG 74 (336)
.+|||||||. ||
T Consensus 26 t~~yRlv~ge~Dg 38 (317)
T d2b78a2 26 TTAYRLFNQDGDS 38 (317)
T ss_dssp CCEEEEEEGGGGT
T ss_pred CCEEEEEEecCCC
Confidence 5799999998 66
No 8
>d1j3na2 c.95.1.1 (A:250-408) Beta-ketoacyl-ACP synthase II {Thermus thermophilus [TaxId: 274]}
Probab=8.15 E-value=93 Score=23.29 Aligned_cols=10 Identities=30% Similarity=0.484 Sum_probs=7.2
Q ss_pred eeeccCCCCC
Q 037287 106 ISLSAFSPGG 115 (336)
Q Consensus 106 islS~Fg~gg 115 (336)
.-.+|||.||
T Consensus 140 a~v~sfGfgG 149 (159)
T d1j3na2 140 ALSNSFAFGG 149 (159)
T ss_dssp EEEEEECTTS
T ss_pred EEEeCCCCCc
Confidence 3457898887
No 9
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=8.06 E-value=78 Score=21.60 Aligned_cols=14 Identities=43% Similarity=0.721 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHhhc
Q 037287 202 KMLVIALMGMAVNV 215 (336)
Q Consensus 202 k~l~I~~l~~llNI 215 (336)
=|++|+||++|+-|
T Consensus 6 LlVViaIIgILaai 19 (158)
T d2pila_ 6 LMIVIAIVGILAAV 19 (158)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 36667777777654
No 10
>d2ahme1 d.302.1.1 (E:43-197) Nonstructural protein 8, NSP8 {SARS coronavirus [TaxId: 227859]}
Probab=7.92 E-value=43 Score=27.37 Aligned_cols=11 Identities=45% Similarity=0.712 Sum_probs=6.9
Q ss_pred cCCCeeeCCCC
Q 037287 71 GKDGVVPLSGR 81 (336)
Q Consensus 71 G~dGvvPLs~~ 81 (336)
.+||||||+--
T Consensus 73 Ar~GvVPL~~I 83 (155)
T d2ahme1 73 ARDGCVPLNII 83 (155)
T ss_dssp HHTTCEESSCC
T ss_pred HhcCeeeeeee
Confidence 35777777643
Done!