BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037288
(513 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 45/71 (63%), Gaps = 5/71 (7%)
Query: 388 QYFLASSMDGTVKLYDHRLTTRG-AVQSYEGHVNSHTRIQLGVDQSE-RFVMSGGEDCKL 445
+Y LA+++D T+KL+D+ ++G +++Y GH N I + ++++SG ED +
Sbjct: 208 KYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMV 264
Query: 446 RIWSIRSGELV 456
IW++++ E+V
Sbjct: 265 YIWNLQTKEIV 275
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 45/71 (63%), Gaps = 5/71 (7%)
Query: 388 QYFLASSMDGTVKLYDHRLTTRG-AVQSYEGHVNSHTRIQLGVDQS-ERFVMSGGEDCKL 445
+Y LA+++D T+KL+D+ ++G +++Y GH N I + ++++SG ED +
Sbjct: 227 KYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 283
Query: 446 RIWSIRSGELV 456
IW++++ E+V
Sbjct: 284 YIWNLQTKEIV 294
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 45/71 (63%), Gaps = 5/71 (7%)
Query: 388 QYFLASSMDGTVKLYDHRLTTRG-AVQSYEGHVNSHTRIQLGVDQS-ERFVMSGGEDCKL 445
+Y LA+++D T+KL+D+ ++G +++Y GH N I + ++++SG ED +
Sbjct: 205 KYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 261
Query: 446 RIWSIRSGELV 456
IW++++ E+V
Sbjct: 262 YIWNLQTKEIV 272
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 45/71 (63%), Gaps = 5/71 (7%)
Query: 388 QYFLASSMDGTVKLYDHRLTTRG-AVQSYEGHVNSHTRIQLGVDQS-ERFVMSGGEDCKL 445
+Y LA+++D T+KL+D+ ++G +++Y GH N I + ++++SG ED +
Sbjct: 229 KYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 285
Query: 446 RIWSIRSGELV 456
IW++++ E+V
Sbjct: 286 YIWNLQTKEIV 296
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 45/71 (63%), Gaps = 5/71 (7%)
Query: 388 QYFLASSMDGTVKLYDHRLTTRG-AVQSYEGHVNSHTRIQLGVDQS-ERFVMSGGEDCKL 445
+Y LA+++D T+KL+D+ ++G +++Y GH N I + ++++SG ED +
Sbjct: 201 KYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 257
Query: 446 RIWSIRSGELV 456
IW++++ E+V
Sbjct: 258 YIWNLQTKEIV 268
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 45/71 (63%), Gaps = 5/71 (7%)
Query: 388 QYFLASSMDGTVKLYDHRLTTRG-AVQSYEGHVNSHTRIQLGVDQS-ERFVMSGGEDCKL 445
+Y LA+++D T+KL+D+ ++G +++Y GH N I + ++++SG ED +
Sbjct: 211 KYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 267
Query: 446 RIWSIRSGELV 456
IW++++ E+V
Sbjct: 268 YIWNLQTKEIV 278
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 45/71 (63%), Gaps = 5/71 (7%)
Query: 388 QYFLASSMDGTVKLYDHRLTTRG-AVQSYEGHVNSHTRIQLGVDQS-ERFVMSGGEDCKL 445
+Y LA+++D T+KL+D+ ++G +++Y GH N I + ++++SG ED +
Sbjct: 205 KYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 261
Query: 446 RIWSIRSGELV 456
IW++++ E+V
Sbjct: 262 YIWNLQTKEIV 272
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 45/71 (63%), Gaps = 5/71 (7%)
Query: 388 QYFLASSMDGTVKLYDHRLTTRG-AVQSYEGHVNSHTRIQLGVDQS-ERFVMSGGEDCKL 445
+Y LA+++D T+KL+D+ ++G +++Y GH N I + ++++SG ED +
Sbjct: 211 KYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 267
Query: 446 RIWSIRSGELV 456
IW++++ E+V
Sbjct: 268 YIWNLQTKEIV 278
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 45/71 (63%), Gaps = 5/71 (7%)
Query: 388 QYFLASSMDGTVKLYDHRLTTRG-AVQSYEGHVNSHTRIQLGVDQS-ERFVMSGGEDCKL 445
+Y LA+++D T+KL+D+ ++G +++Y GH N I + ++++SG ED +
Sbjct: 211 KYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 267
Query: 446 RIWSIRSGELV 456
IW++++ E+V
Sbjct: 268 YIWNLQTKEIV 278
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 45/71 (63%), Gaps = 5/71 (7%)
Query: 388 QYFLASSMDGTVKLYDHRLTTRG-AVQSYEGHVNSHTRIQLGVDQS-ERFVMSGGEDCKL 445
+Y LA+++D T+KL+D+ ++G +++Y GH N I + ++++SG ED +
Sbjct: 206 KYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 262
Query: 446 RIWSIRSGELV 456
IW++++ E+V
Sbjct: 263 YIWNLQTKEIV 273
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 45/71 (63%), Gaps = 5/71 (7%)
Query: 388 QYFLASSMDGTVKLYDHRLTTRG-AVQSYEGHVNSHTRIQLGVDQS-ERFVMSGGEDCKL 445
+Y LA+++D T+KL+D+ ++G +++Y GH N I + ++++SG ED +
Sbjct: 204 KYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 260
Query: 446 RIWSIRSGELV 456
IW++++ E+V
Sbjct: 261 YIWNLQTKEIV 271
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 45/71 (63%), Gaps = 5/71 (7%)
Query: 388 QYFLASSMDGTVKLYDHRLTTRG-AVQSYEGHVNSHTRIQLGVDQS-ERFVMSGGEDCKL 445
+Y LA+++D T+KL+D+ ++G +++Y GH N I + ++++SG ED +
Sbjct: 210 KYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 266
Query: 446 RIWSIRSGELV 456
IW++++ E+V
Sbjct: 267 YIWNLQTKEIV 277
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 45/71 (63%), Gaps = 5/71 (7%)
Query: 388 QYFLASSMDGTVKLYDHRLTTRG-AVQSYEGHVNSHTRIQLGVDQS-ERFVMSGGEDCKL 445
+Y LA+++D T+KL+D+ ++G +++Y GH N I + ++++SG ED +
Sbjct: 222 KYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 278
Query: 446 RIWSIRSGELV 456
IW++++ E+V
Sbjct: 279 YIWNLQTKEIV 289
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 45/71 (63%), Gaps = 5/71 (7%)
Query: 388 QYFLASSMDGTVKLYDHRLTTRG-AVQSYEGHVNSHTRIQLGVDQS-ERFVMSGGEDCKL 445
+Y LA+++D T+KL+D+ ++G +++Y GH N I + ++++SG ED +
Sbjct: 208 KYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 264
Query: 446 RIWSIRSGELV 456
IW++++ E+V
Sbjct: 265 YIWNLQTKEIV 275
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 45/71 (63%), Gaps = 5/71 (7%)
Query: 388 QYFLASSMDGTVKLYDHRLTTRG-AVQSYEGHVNSHTRIQLGVDQS-ERFVMSGGEDCKL 445
+Y LA+++D T+KL+D+ ++G +++Y GH N I + ++++SG ED +
Sbjct: 208 KYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 264
Query: 446 RIWSIRSGELV 456
IW++++ E+V
Sbjct: 265 YIWNLQTKEIV 275
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 45/71 (63%), Gaps = 5/71 (7%)
Query: 388 QYFLASSMDGTVKLYDHRLTTRG-AVQSYEGHVNSHTRIQLGVDQS-ERFVMSGGEDCKL 445
+Y LA+++D T+KL+D+ ++G +++Y GH N I + ++++SG ED +
Sbjct: 208 KYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 264
Query: 446 RIWSIRSGELV 456
IW++++ E+V
Sbjct: 265 YIWNLQTKEIV 275
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 366 WPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRI 425
W S + P S +Q + YF + DG +K+++ R +++E +VN
Sbjct: 164 WVSCVRYSPIMKSA-NKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVN----- 217
Query: 426 QLGVDQSERFVMSGGEDCKLRIWSI 450
L + + +++ +GG+D KL IW I
Sbjct: 218 HLSISPNGKYIATGGKDKKLLIWDI 242
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 8/99 (8%)
Query: 361 LKANIWPSHTTFMPSSISCLQSLQLYDQYFLAS-SMDGTV---KLYDHRLTTRGAV--QS 414
+K I H+ ++ S ++ + D L S S D TV KLY+ + ++
Sbjct: 12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKA 71
Query: 415 YEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSG 453
GH +H L + Q F +S D LR+W +R+G
Sbjct: 72 LTGH--NHFVSDLALSQENCFAISSSWDKTLRLWDLRTG 108
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 55/102 (53%), Gaps = 6/102 (5%)
Query: 353 VTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAV 412
VT Q + + +PS T S+S + SL F++ S D TV+L+D R+T+R AV
Sbjct: 187 VTTGQRISIFGSEFPSGHTADVLSLS-INSLNA--NMFISGSCDTTVRLWDLRITSR-AV 242
Query: 413 QSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGE 454
++Y GH ++ D +RF +G +D R++ +R+G
Sbjct: 243 RTYHGHEGDINSVKFFPD-GQRF-GTGSDDGTCRLFDMRTGH 282
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 44/71 (61%), Gaps = 5/71 (7%)
Query: 388 QYFLASSMDGTVKLYDHRLTTRG-AVQSYEGHVNSHTRIQLGVDQSE-RFVMSGGEDCKL 445
+Y LA+++D +KL+D+ ++G +++Y GH N I + ++++SG ED +
Sbjct: 208 KYILAATLDNDLKLWDY---SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMV 264
Query: 446 RIWSIRSGELV 456
IW++++ E+V
Sbjct: 265 YIWNLQTKEIV 275
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 76/177 (42%), Gaps = 26/177 (14%)
Query: 295 SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVT 354
S D L + H GNV F++G +++ K +++ + + Y+ N V
Sbjct: 92 SGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDK-----TAKVWKEGSLVYNLQAHNASVW 146
Query: 355 NEQWFELKAN------------IWPSHT---TFMPSSISCLQSLQLYDQ-YFLASSMDGT 398
+ + N +W + TF ++ L + D +F++ S DG
Sbjct: 147 DAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGL 206
Query: 399 VKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGEL 455
+KL D T +++YEGH + I+L + ++S GED +RIWS +G L
Sbjct: 207 IKLVDXH--TGDVLRTYEGHESFVYCIKLLPNGD---IVSCGEDRTVRIWSKENGSL 258
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 369 HTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLG 428
HT ++ + S D L +S DGT L+D + + +QS+ GH + L
Sbjct: 153 HTNYLSAC-----SFTNSDMQILTASGDGTCALWD--VESGQLLQSFHGHGADVLCLDLA 205
Query: 429 VDQSERFVMSGGEDCKLRIWSIRSGELV 456
++ +SGG D K +W +RSG+ V
Sbjct: 206 PSETGNTFVSGGCDKKAMVWDMRSGQCV 233
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 390 FLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWS 449
F + S D T +LYD R A+ S E + + + + S R + +G D + +W
Sbjct: 255 FASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSL--SGRLLFAGYNDYTINVWD 312
Query: 450 IRSGELV 456
+ G V
Sbjct: 313 VLKGSRV 319
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 383 LQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGED 442
LQ DQ ++ D T+K++D T + GH S L + ER +++G D
Sbjct: 139 LQYDDQKIVSGLRDNTIKIWDK--NTLECKRILTGHTGS----VLCLQYDERVIITGSSD 192
Query: 443 CKLRIWSIRSGELV 456
+R+W + +GE++
Sbjct: 193 STVRVWDVNTGEML 206
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 46/99 (46%), Gaps = 6/99 (6%)
Query: 387 DQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLR 446
D+Y +++S D T+K+++ + + +N H R + +R V+SG D +R
Sbjct: 266 DKYIVSASGDRTIKVWN------TSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIR 319
Query: 447 IWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKI 485
+W I G + + + + + +R + +GKI
Sbjct: 320 LWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKI 358
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 380 LQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSG 439
+ LQ D+ ++ S D T++L+D + ++ EGH I+ + ++SG
Sbjct: 299 IACLQYRDRLVVSGSSDNTIRLWD--IECGACLRVLEGHEELVRCIRF----DNKRIVSG 352
Query: 440 GEDCKLRIWSI 450
D K+++W +
Sbjct: 353 AYDGKIKVWDL 363
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 50/96 (52%), Gaps = 7/96 (7%)
Query: 365 IWPSHTTFMPSSISCLQSL----QLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVN 420
+W T +++ QSL +L D ++ + D TVK++D + T +Q+ +G N
Sbjct: 303 VWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWD--IKTGQCLQTLQG-PN 359
Query: 421 SHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELV 456
H + ++ FV++ +D +++W +++GE +
Sbjct: 360 KHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFI 395
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 58/121 (47%), Gaps = 22/121 (18%)
Query: 359 FELKANIWPSHTTFMPSSISCLQSLQ-----LYDQYF-----LASSMDGTVKLYDHRLTT 408
++ +W P + +CL +LQ +Y F ++ S+D +++++D + T
Sbjct: 257 YDFMVKVWD------PETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWD--VET 308
Query: 409 RGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSA 468
+ + GH + + G++ + ++SG D ++IW I++G+ + + N SA
Sbjct: 309 GNCIHTLTGHQS----LTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSA 364
Query: 469 V 469
V
Sbjct: 365 V 365
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 382 SLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGE 441
S Q+ D ++ S D T+K+++ T + + GH ++ + L E+ V+SG
Sbjct: 164 SSQMRDNIIISGSTDRTLKVWNAE--TGECIHTLYGHTSTVRCMHL----HEKRVVSGSR 217
Query: 442 DCKLRIWSIRSGE 454
D LR+W I +G+
Sbjct: 218 DATLRVWDIETGQ 230
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Query: 389 YFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIW 448
Y L++S D T++L+D + T Q + GH + + + +D+ ++SG D +++W
Sbjct: 73 YALSASWDKTLRLWD--VATGETYQRFVGHKSD--VMSVDIDKKASMIISGSRDKTIKVW 128
Query: 449 SIR 451
+I+
Sbjct: 129 TIK 131
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Query: 389 YFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIW 448
Y L++S D T++L+D + T Q + GH + + + +D+ ++SG D +++W
Sbjct: 79 YALSASWDKTLRLWD--VATGETYQRFVGHKSD--VMSVDIDKKASMIISGSRDKTIKVW 134
Query: 449 SIR 451
+I+
Sbjct: 135 TIK 137
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Query: 389 YFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIW 448
Y L++S D T++L+D + T Q + GH + + + +D+ ++SG D +++W
Sbjct: 79 YALSASWDKTLRLWD--VATGETYQRFVGHKSD--VMSVDIDKKASMIISGSRDKTIKVW 134
Query: 449 SIR 451
+I+
Sbjct: 135 TIK 137
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Query: 389 YFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIW 448
Y L++S D T++L+D + T Q + GH + + + +D+ ++SG D +++W
Sbjct: 79 YALSASWDKTLRLWD--VATGETYQRFVGHKSD--VMSVDIDKKASMIISGSRDKTIKVW 134
Query: 449 SIR 451
+I+
Sbjct: 135 TIK 137
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Query: 389 YFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIW 448
Y L++S D T++L+D + T Q + GH + + + +D+ ++SG D +++W
Sbjct: 79 YALSASWDKTLRLWD--VATGETYQRFVGHKSD--VMSVDIDKKASMIISGSRDKTIKVW 134
Query: 449 SIR 451
+I+
Sbjct: 135 TIK 137
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 388 QYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRI 447
Q+ L+ S DGT++L+D LTT + + GH + D R ++SG D +++
Sbjct: 76 QFALSGSWDGTLRLWD--LTTGTTTRRFVGHTKDVLSVAFSSDN--RQIVSGSRDKTIKL 131
Query: 448 WS 449
W+
Sbjct: 132 WN 133
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 388 QYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRI 447
Q+ L+ S DGT++L+D LTT + + GH + D R ++SG D +++
Sbjct: 99 QFALSGSWDGTLRLWD--LTTGTTTRRFVGHTKDVLSVAFSSDN--RQIVSGSRDKTIKL 154
Query: 448 WS 449
W+
Sbjct: 155 WN 156
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 37/62 (59%), Gaps = 6/62 (9%)
Query: 389 YFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGV-DQSERFVMSGGEDCKLRI 447
Y + +S D T+K++D++ T+ V + EGH+++ + V + ++SG ED L+I
Sbjct: 200 YMITASDDLTIKIWDYQ--TKSCVATLEGHMSN---VSFAVFHPTLPIIISGSEDGTLKI 254
Query: 448 WS 449
W+
Sbjct: 255 WN 256
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 37/62 (59%), Gaps = 6/62 (9%)
Query: 389 YFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGV-DQSERFVMSGGEDCKLRI 447
Y + +S D T+K++D++ T+ V + EGH+++ + V + ++SG ED L+I
Sbjct: 200 YMITASDDLTIKIWDYQ--TKSCVATLEGHMSN---VSFAVFHPTLPIIISGSEDGTLKI 254
Query: 448 WS 449
W+
Sbjct: 255 WN 256
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 389 YFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIW 448
Y L++S D T++L+D + T Q + GH + + +D+ ++SG D +++W
Sbjct: 79 YALSASWDKTLRLWD--VATGETYQRFVGHKSDVXSVD--IDKKASXIISGSRDKTIKVW 134
Query: 449 SIR 451
+I+
Sbjct: 135 TIK 137
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 12/126 (9%)
Query: 390 FLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTR----IQLG--VDQSERFVMSGGEDC 443
+ S DGTVK++D R V + E + R + G +Q ER V +G ++
Sbjct: 132 IVTGSRDGTVKVWDPR-QKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNG 190
Query: 444 KLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSM----GPQIEGKIHEEFDLGQRHSWEA 499
++++ +R+ L +E N V S R SM +EGK H FD+ +H +
Sbjct: 191 DIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFH-VFDMRTQHPTKG 249
Query: 500 WIGTQE 505
+ E
Sbjct: 250 FASVSE 255
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 389 YFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQ-SERFVMSGGEDCKLRI 447
Y + +S D T+K++D++ T+ V + EGH+ + + V + ++SG ED L+I
Sbjct: 200 YMITASDDLTIKIWDYQ--TKSCVATLEGHM---SNVSFAVFHPTLPIIISGSEDGTLKI 254
Query: 448 WS 449
W+
Sbjct: 255 WN 256
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 389 YFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQ-SERFVMSGGEDCKLRI 447
Y + +S D T+K++D++ T+ V + EGH+ + + V + ++SG ED L+I
Sbjct: 200 YMITASDDLTIKIWDYQ--TKSCVATLEGHM---SNVSFAVFHPTLPIIISGSEDGTLKI 254
Query: 448 WS 449
W+
Sbjct: 255 WN 256
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 396 DGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGEL 455
DG + ++D L + V+ ++GH + + I + D ++ + +GG D +R W +R G
Sbjct: 162 DGNIAVWD--LHNQTLVRQFQGHTDGASCIDISNDGTK--LWTGGLDNTVRSWDLREGRQ 217
Query: 456 VFEDKFSNSV 465
+ + F++ +
Sbjct: 218 LQQHDFTSQI 227
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 16/119 (13%)
Query: 344 YSRLQRNDRVTN---EQWFELK----ANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMD 396
Y +L + DR+ E F LK P TT S + LQ D Y + + D
Sbjct: 82 YPKLSQQDRLRLSFLENIFILKNWYNPKFVPQRTTLRGHXTSVITCLQFEDNYVITGADD 141
Query: 397 GTVKLYDHRLTTRGAVQ--SYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSG 453
+++YD + + +Q ++G V + G+ ++SG D +R+W I+ G
Sbjct: 142 KXIRVYD-SINKKFLLQLSGHDGGVWALKYAHGGI------LVSGSTDRTVRVWDIKKG 193
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 43/74 (58%), Gaps = 6/74 (8%)
Query: 383 LQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGED 442
L+L D++ ++++ DG+++ +D +R SY H N V S+ ++SG E+
Sbjct: 358 LRLSDKFLVSAAADGSIRGWDANDYSRKF--SYH-HTNLSAITTFYV--SDNILVSGSEN 412
Query: 443 CKLRIWSIRSGELV 456
+ I+++RSG+LV
Sbjct: 413 -QFNIYNLRSGKLV 425
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 16/119 (13%)
Query: 344 YSRLQRNDRVTN---EQWFELK----ANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMD 396
Y +L + DR+ E F LK P TT S + LQ D Y + + D
Sbjct: 82 YPKLSQQDRLRLSFLENIFILKNWYNPKFVPQRTTLRGHMTSVITCLQFEDNYVITGADD 141
Query: 397 GTVKLYDHRLTTRGAVQ--SYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSG 453
+++YD + + +Q ++G V + G+ ++SG D +R+W I+ G
Sbjct: 142 KMIRVYD-SINKKFLLQLSGHDGGVWALKYAHGGI------LVSGSTDRTVRVWDIKKG 193
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 74/154 (48%), Gaps = 13/154 (8%)
Query: 308 GNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRV-TNEQWFELKANIW 366
GN+V+ G + ++ DV + + +G RI YS + ++R + IW
Sbjct: 280 GNIVVSGSYDNTLIVWDV-AQMKCLYILSGHTDRI-YSTIYDHERKRCISASMDTTIRIW 337
Query: 367 PSHTTFMPSSI----SCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSH 422
+ ++ + + L+L D++ ++++ DG+++ +D +R SY H N
Sbjct: 338 DLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKF--SYH-HTNLS 394
Query: 423 TRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELV 456
V S+ ++SG E+ + I+++RSG+LV
Sbjct: 395 AITTFYV--SDNILVSGSEN-QFNIYNLRSGKLV 425
>pdb|1H2V|C Chain C, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
Length = 771
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 183 SILMPSSVSCIKLFGKHPSCATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPN 240
S L PS+ +CI +G S + G SV L + S+ T I+++ D P PN
Sbjct: 455 SALCPSNPTCIYKYGDESSNSLPGHSVALCLAVAFKSKATNDEIFSILKDVP---NPN 509
>pdb|1H6K|A Chain A, Nuclear Cap Binding Complex
pdb|1H6K|B Chain B, Nuclear Cap Binding Complex
pdb|1H6K|C Chain C, Nuclear Cap Binding Complex
Length = 757
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 183 SILMPSSVSCIKLFGKHPSCATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPN 240
S L PS+ +CI +G S + G SV L + S+ T I+++ D P PN
Sbjct: 455 SALCPSNPTCIYKYGDESSNSLPGHSVALCLAVAFKSKATNDEIFSILKDVP---NPN 509
>pdb|1H2T|C Chain C, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
pdb|1H2U|A Chain A, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
pdb|1H2U|B Chain B, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
Length = 723
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 183 SILMPSSVSCIKLFGKHPSCATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPN 240
S L PS+ +CI +G S + G SV L + S+ T I+++ D P PN
Sbjct: 455 SALCPSNPTCIYKYGDESSNSLPGHSVALCLAVAFKSKATNDEIFSILKDVP---NPN 509
>pdb|3ALN|A Chain A, Crystal Structure Of Human Non-Phosphorylated Mkk4 Kinase
Domain Complexed With Amp-Pnp
pdb|3ALN|B Chain B, Crystal Structure Of Human Non-Phosphorylated Mkk4 Kinase
Domain Complexed With Amp-Pnp
pdb|3ALN|C Chain C, Crystal Structure Of Human Non-Phosphorylated Mkk4 Kinase
Domain Complexed With Amp-Pnp
pdb|3ALO|A Chain A, Crystal Structure Of Human Non-Phosphorylated Mkk4 Kinase
Domain Ternary Complex With Amp-Pnp And P38 Peptide
pdb|3VUT|A Chain A, Crystal Structures Of Non-Phosphorylated Map2k4
pdb|3VUT|B Chain B, Crystal Structures Of Non-Phosphorylated Map2k4
Length = 327
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 10/61 (16%)
Query: 307 SGNVVLCGF-RNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANI 365
SGN+ LC F +G +V + R GC PY +R D + Q +++++++
Sbjct: 162 SGNIKLCDFGISGQLVDSIAKTRDAGCR---------PYMAPERIDPSASRQGYDVRSDV 212
Query: 366 W 366
W
Sbjct: 213 W 213
>pdb|2H9U|A Chain A, Crystal Structure Of The Archaea Specific Dna Binding
Protein
pdb|3U6Y|A Chain A, Crystal Structure Of Alba2-Dna Complex
pdb|3U6Y|C Chain C, Crystal Structure Of Alba2-Dna Complex
Length = 102
Score = 30.8 bits (68), Expect = 1.9, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 95 RYEATNQTGDITLEQIELNVQTPEGQFRT 123
R+ + DI ++ E+ VQTPEGQ RT
Sbjct: 57 RFAKNIEIKDIKIDSQEIEVQTPEGQTRT 85
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 50/115 (43%), Gaps = 6/115 (5%)
Query: 372 FMPSS-ISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVD 430
++P + +SC L + +Y DG +K+ + L S GH + IQ D
Sbjct: 958 YLPEAQVSCC-CLSPHLEYVAFGDEDGAIKIIE--LPNNRVFSSGVGHKKAVRHIQFTAD 1014
Query: 431 QSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKI 485
+ ++S ED +++W+ ++G+ VF +V + R + +G +
Sbjct: 1015 G--KTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTV 1067
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 50/115 (43%), Gaps = 6/115 (5%)
Query: 372 FMPSS-ISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVD 430
++P + +SC L + +Y DG +K+ + L S GH + IQ D
Sbjct: 965 YLPEAQVSCC-CLSPHLEYVAFGDEDGAIKIIE--LPNNRVFSSGVGHKKAVRHIQFTAD 1021
Query: 431 QSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKI 485
+ ++S ED +++W+ ++G+ VF +V + R + +G +
Sbjct: 1022 G--KTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTV 1074
>pdb|3QTH|A Chain A, Crystal Structure Of A Hypothetical Dinb-Like Protein
(Cps_3021) From Colwellia Psychrerythraea 34h At 2.20 A
Resolution
pdb|3QTH|B Chain B, Crystal Structure Of A Hypothetical Dinb-Like Protein
(Cps_3021) From Colwellia Psychrerythraea 34h At 2.20 A
Resolution
Length = 176
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 13/82 (15%)
Query: 38 PISKQPTRATNSSLTGATTSKLLQARELRGNVFSLSKGKCNFKEEFQKRLISQPVVWRYE 97
P + Q ATN +L + +EL G++ S C K VV +
Sbjct: 51 PFNVQAKIATNFALRACCPLSGKEYKELEGDIDSF----CGLK---------TYVVTAID 97
Query: 98 ATNQTGDITLEQIELNVQTPEG 119
N+ + TLEQ+ LNVQ G
Sbjct: 98 YINKLSEPTLEQLNLNVQDTAG 119
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 14/104 (13%)
Query: 388 QYFLASSMDGTVKLY---------DHRLTTRGAVQ-SYEGHVNSHTRIQLGVDQSERFVM 437
Q ++ S+D +VKL+ D + G + +Y GH + + + Q++ +++
Sbjct: 269 QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD--FVLSVATTQNDEYIL 326
Query: 438 SGGEDCKLRIWSIRSGE-LVFEDKFSNSVPSAVCWRTQRSMGPQ 480
SG +D + W +SG L+ NSV S V S+GP+
Sbjct: 327 SGSKDRGVLFWDKKSGNPLLMLQGHRNSVIS-VAVANGSSLGPE 369
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 419 VNSHTRIQLGV---DQSERFVMSGGEDCKLRIWSIRSGELVF 457
V HT L + ++ + SG EDC + +W I G LV
Sbjct: 77 VXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVL 118
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,384,659
Number of Sequences: 62578
Number of extensions: 612519
Number of successful extensions: 1489
Number of sequences better than 100.0: 58
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 1387
Number of HSP's gapped (non-prelim): 148
length of query: 513
length of database: 14,973,337
effective HSP length: 103
effective length of query: 410
effective length of database: 8,527,803
effective search space: 3496399230
effective search space used: 3496399230
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)