Query 037288
Match_columns 513
No_of_seqs 548 out of 3707
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 10:43:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037288.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037288hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2695 WD40 repeat protein [G 100.0 5.1E-42 1.1E-46 308.4 16.3 413 1-510 3-424 (425)
2 KOG0272 U4/U6 small nuclear ri 100.0 7.8E-38 1.7E-42 288.3 19.1 319 56-484 115-451 (459)
3 KOG0271 Notchless-like WD40 re 100.0 1.2E-35 2.6E-40 270.4 25.0 300 114-486 122-474 (480)
4 KOG0271 Notchless-like WD40 re 100.0 7.4E-35 1.6E-39 265.3 22.1 275 231-513 92-460 (480)
5 KOG0263 Transcription initiati 100.0 1.5E-30 3.3E-35 258.0 23.9 197 249-486 444-642 (707)
6 KOG0315 G-protein beta subunit 100.0 4.2E-28 9.1E-33 209.6 30.7 234 224-472 61-309 (311)
7 KOG0286 G-protein beta subunit 100.0 1E-28 2.2E-33 218.2 26.4 231 250-486 49-296 (343)
8 KOG0286 G-protein beta subunit 100.0 1.5E-28 3.2E-33 217.2 27.1 196 250-486 139-338 (343)
9 KOG0272 U4/U6 small nuclear ri 100.0 1.6E-29 3.5E-34 233.5 19.8 224 254-486 173-411 (459)
10 KOG0316 Conserved WD40 repeat- 100.0 1.3E-28 2.7E-33 211.2 23.1 231 249-486 52-295 (307)
11 KOG0289 mRNA splicing factor [ 100.0 2E-28 4.4E-33 226.8 24.7 318 51-485 173-498 (506)
12 KOG0318 WD40 repeat stress pro 100.0 6.2E-27 1.4E-31 221.8 32.9 331 110-486 62-553 (603)
13 KOG0315 G-protein beta subunit 100.0 2.3E-27 5E-32 205.1 26.7 242 238-486 22-281 (311)
14 KOG0284 Polyadenylation factor 100.0 3.6E-29 7.7E-34 230.2 15.0 266 114-486 103-373 (464)
15 KOG0279 G protein beta subunit 100.0 1.9E-27 4.2E-32 208.9 24.9 218 222-486 36-257 (315)
16 KOG0291 WD40-repeat-containing 100.0 6.5E-27 1.4E-31 230.2 30.0 294 121-483 275-602 (893)
17 KOG0282 mRNA splicing factor [ 100.0 3.9E-28 8.5E-33 228.0 17.1 253 218-485 231-497 (503)
18 KOG0265 U5 snRNP-specific prot 100.0 1.7E-26 3.7E-31 204.9 23.2 274 111-485 51-330 (338)
19 KOG0284 Polyadenylation factor 100.0 4.3E-28 9.3E-33 223.1 11.3 195 251-486 133-330 (464)
20 KOG0279 G protein beta subunit 99.9 2.1E-25 4.6E-30 196.1 26.8 260 123-481 28-301 (315)
21 KOG0273 Beta-transducin family 99.9 4.7E-26 1E-30 213.3 24.1 267 123-484 247-514 (524)
22 KOG0273 Beta-transducin family 99.9 6.3E-26 1.4E-30 212.4 24.9 222 257-486 236-475 (524)
23 KOG0263 Transcription initiati 99.9 1.1E-26 2.4E-31 230.7 20.0 281 87-452 363-650 (707)
24 KOG0295 WD40 repeat-containing 99.9 3.4E-26 7.4E-31 207.9 21.2 212 248-486 185-399 (406)
25 KOG0276 Vesicle coat complex C 99.9 4.4E-26 9.6E-31 220.0 22.6 196 250-484 91-291 (794)
26 KOG0285 Pleiotropic regulator 99.9 2.7E-26 5.8E-31 207.9 19.4 197 250-487 145-343 (460)
27 KOG0266 WD40 repeat-containing 99.9 4.2E-25 9.2E-30 224.4 28.7 274 113-485 165-444 (456)
28 KOG0645 WD40 repeat protein [G 99.9 1.2E-24 2.7E-29 190.6 24.4 199 249-486 7-218 (312)
29 KOG0319 WD40-repeat-containing 99.9 6.8E-25 1.5E-29 215.9 24.2 231 250-486 359-612 (775)
30 KOG0291 WD40-repeat-containing 99.9 5.6E-24 1.2E-28 209.7 30.5 225 248-483 299-540 (893)
31 KOG0283 WD40 repeat-containing 99.9 1.3E-24 2.7E-29 217.9 25.9 199 248-452 361-577 (712)
32 PLN00181 protein SPA1-RELATED; 99.9 6.2E-24 1.3E-28 231.6 33.6 213 221-484 552-784 (793)
33 KOG0313 Microtubule binding pr 99.9 1.6E-24 3.6E-29 198.0 24.2 230 250-486 138-411 (423)
34 KOG0285 Pleiotropic regulator 99.9 3.1E-25 6.8E-30 201.0 18.7 193 252-486 189-383 (460)
35 KOG0292 Vesicle coat complex C 99.9 1.8E-24 3.9E-29 216.2 24.7 235 246-487 41-316 (1202)
36 KOG0293 WD40 repeat-containing 99.9 3.1E-24 6.8E-29 197.9 23.0 230 250-488 263-508 (519)
37 cd00200 WD40 WD40 domain, foun 99.9 5E-23 1.1E-27 196.2 31.2 210 222-484 71-282 (289)
38 KOG0306 WD40-repeat-containing 99.9 2.6E-22 5.5E-27 198.0 34.5 230 248-486 365-615 (888)
39 KOG0645 WD40 repeat protein [G 99.9 9.7E-23 2.1E-27 178.7 25.7 261 124-484 28-302 (312)
40 KOG0772 Uncharacterized conser 99.9 6.7E-24 1.4E-28 200.8 19.6 202 249-486 261-481 (641)
41 KOG1446 Histone H3 (Lys4) meth 99.9 3.2E-22 7E-27 179.6 28.6 207 245-486 89-298 (311)
42 KOG0277 Peroxisomal targeting 99.9 4.2E-24 9.1E-29 185.5 16.0 250 93-450 54-308 (311)
43 KOG0318 WD40 repeat stress pro 99.9 5.8E-22 1.3E-26 188.3 31.4 296 125-486 162-595 (603)
44 KOG0277 Peroxisomal targeting 99.9 7.3E-24 1.6E-28 184.0 17.0 213 222-484 81-300 (311)
45 cd00200 WD40 WD40 domain, foun 99.9 4.1E-22 8.9E-27 189.9 29.9 222 251-482 4-238 (289)
46 KOG0319 WD40-repeat-containing 99.9 2.4E-22 5.1E-27 198.1 28.5 230 251-486 318-570 (775)
47 KOG0296 Angio-associated migra 99.9 1.6E-22 3.4E-27 184.3 25.2 231 248-486 56-391 (399)
48 KOG0276 Vesicle coat complex C 99.9 1.3E-23 2.8E-28 203.1 19.2 227 252-486 9-250 (794)
49 KOG0316 Conserved WD40 repeat- 99.9 3.4E-23 7.5E-28 177.9 19.3 227 248-486 9-250 (307)
50 KOG0295 WD40 repeat-containing 99.9 1.5E-23 3.3E-28 190.7 18.0 230 249-486 101-357 (406)
51 KOG0281 Beta-TrCP (transducin 99.9 1.2E-24 2.6E-29 196.5 10.3 200 241-486 222-423 (499)
52 KOG0266 WD40 repeat-containing 99.9 9.8E-23 2.1E-27 207.1 25.5 196 251-486 153-357 (456)
53 KOG0265 U5 snRNP-specific prot 99.9 4.5E-23 9.8E-28 183.3 19.0 197 249-486 40-239 (338)
54 KOG1407 WD40 repeat protein [F 99.9 4.2E-22 9.2E-27 173.8 23.7 244 222-485 40-294 (313)
55 PLN00181 protein SPA1-RELATED; 99.9 6.6E-22 1.4E-26 215.8 31.1 225 252-486 479-731 (793)
56 PTZ00420 coronin; Provisional 99.9 1.1E-21 2.4E-26 199.7 30.0 217 221-475 94-318 (568)
57 KOG0306 WD40-repeat-containing 99.9 1.2E-22 2.7E-27 200.2 21.7 213 221-486 431-657 (888)
58 KOG0275 Conserved WD40 repeat- 99.9 5.3E-23 1.1E-27 184.3 16.4 227 252-484 259-500 (508)
59 KOG0308 Conserved WD40 repeat- 99.9 4.8E-23 1E-27 200.2 17.3 198 251-486 68-278 (735)
60 KOG0640 mRNA cleavage stimulat 99.9 1.7E-22 3.7E-27 180.1 19.0 205 250-459 106-343 (430)
61 KOG0288 WD40 repeat protein Ti 99.9 5.7E-23 1.2E-27 189.8 15.0 195 248-484 253-452 (459)
62 PTZ00421 coronin; Provisional 99.9 2.7E-21 5.8E-26 196.0 27.7 216 251-474 70-314 (493)
63 KOG0292 Vesicle coat complex C 99.9 1.1E-21 2.3E-26 196.6 24.1 242 239-486 76-389 (1202)
64 KOG1408 WD40 repeat protein [F 99.9 1.6E-21 3.6E-26 191.0 24.6 250 222-486 344-706 (1080)
65 KOG0310 Conserved WD40 repeat- 99.9 5.2E-22 1.1E-26 187.3 20.4 222 252-484 64-301 (487)
66 KOG0313 Microtubule binding pr 99.9 8.9E-22 1.9E-26 180.2 21.2 167 246-450 250-417 (423)
67 PTZ00420 coronin; Provisional 99.9 1.1E-20 2.4E-25 192.4 30.7 199 248-486 66-286 (568)
68 KOG0275 Conserved WD40 repeat- 99.9 6E-23 1.3E-27 183.9 11.8 181 253-474 210-403 (508)
69 KOG0296 Angio-associated migra 99.9 2E-21 4.4E-26 177.0 21.2 260 123-451 118-398 (399)
70 KOG0264 Nucleosome remodeling 99.9 2E-21 4.4E-26 182.1 21.6 226 221-485 144-396 (422)
71 KOG0647 mRNA export protein (c 99.9 8.8E-21 1.9E-25 168.9 24.4 228 252-484 68-314 (347)
72 KOG0300 WD40 repeat-containing 99.9 7.1E-22 1.5E-26 176.6 16.9 254 249-511 141-447 (481)
73 KOG0281 Beta-TrCP (transducin 99.9 3.3E-23 7.2E-28 187.2 8.3 188 238-474 259-460 (499)
74 KOG0305 Anaphase promoting com 99.9 8.7E-21 1.9E-25 185.8 24.4 245 259-513 180-440 (484)
75 KOG0278 Serine/threonine kinas 99.9 1.9E-21 4.1E-26 168.6 16.6 227 249-486 52-290 (334)
76 KOG0643 Translation initiation 99.9 3E-21 6.6E-26 169.0 17.8 233 247-486 43-310 (327)
77 KOG0264 Nucleosome remodeling 99.9 1.6E-20 3.6E-25 176.0 22.3 249 123-451 137-404 (422)
78 KOG0643 Translation initiation 99.9 4.6E-20 9.9E-25 161.7 22.8 224 251-483 5-251 (327)
79 KOG0274 Cdc4 and related F-box 99.9 2.9E-20 6.4E-25 188.7 25.1 224 249-486 241-477 (537)
80 KOG2919 Guanine nucleotide-bin 99.9 4.1E-20 8.9E-25 166.0 22.1 226 256-486 104-363 (406)
81 KOG0646 WD40 repeat protein [G 99.9 9.3E-21 2E-25 178.0 18.4 231 238-474 63-330 (476)
82 KOG0641 WD40 repeat protein [G 99.9 3.2E-19 6.8E-24 152.6 25.8 193 252-486 85-296 (350)
83 KOG0289 mRNA splicing factor [ 99.9 3.5E-20 7.5E-25 172.5 21.5 199 249-486 254-455 (506)
84 KOG1332 Vesicle coat complex C 99.9 2.8E-20 6.1E-25 161.0 18.7 216 249-486 49-279 (299)
85 KOG0294 WD40 repeat-containing 99.9 2E-19 4.4E-24 161.1 24.6 251 182-472 38-306 (362)
86 KOG0310 Conserved WD40 repeat- 99.9 1.5E-20 3.2E-25 177.6 18.0 222 256-486 26-261 (487)
87 KOG0269 WD40 repeat-containing 99.9 3.9E-21 8.4E-26 190.5 14.4 188 258-486 89-287 (839)
88 KOG1274 WD40 repeat protein [G 99.9 3.1E-19 6.6E-24 180.4 27.7 258 113-474 19-281 (933)
89 KOG0269 WD40 repeat-containing 99.9 1.6E-20 3.4E-25 186.2 17.2 197 251-486 128-333 (839)
90 KOG0283 WD40 repeat-containing 99.9 3.2E-20 6.9E-25 186.5 19.4 197 248-487 258-527 (712)
91 PTZ00421 coronin; Provisional 99.9 2.1E-19 4.5E-24 182.3 25.2 188 257-482 21-230 (493)
92 KOG0302 Ribosome Assembly prot 99.8 3E-20 6.5E-25 170.1 16.9 226 221-484 172-430 (440)
93 KOG1407 WD40 repeat protein [F 99.8 1.8E-19 3.9E-24 157.5 20.5 226 251-487 15-255 (313)
94 KOG0267 Microtubule severing p 99.8 3.6E-21 7.9E-26 189.3 11.0 226 252-486 24-261 (825)
95 KOG0299 U3 snoRNP-associated p 99.8 7.5E-19 1.6E-23 165.0 25.2 218 253-482 199-445 (479)
96 KOG0973 Histone transcription 99.8 1.7E-19 3.8E-24 185.7 22.7 248 222-478 35-340 (942)
97 KOG4283 Transcription-coupled 99.8 1E-19 2.2E-24 161.5 17.8 164 252-454 97-279 (397)
98 KOG1036 Mitotic spindle checkp 99.8 3.3E-18 7.3E-23 153.2 25.5 267 188-487 14-298 (323)
99 KOG1446 Histone H3 (Lys4) meth 99.8 6.9E-18 1.5E-22 151.9 27.5 226 252-486 10-255 (311)
100 KOG0282 mRNA splicing factor [ 99.8 1.9E-19 4.1E-24 169.9 18.1 260 123-449 227-503 (503)
101 KOG0302 Ribosome Assembly prot 99.8 2.6E-19 5.6E-24 164.0 18.2 251 123-448 165-435 (440)
102 KOG2096 WD40 repeat protein [G 99.8 2E-18 4.3E-23 154.9 23.3 202 252-489 183-399 (420)
103 KOG1539 WD repeat protein [Gen 99.8 5.3E-18 1.1E-22 169.7 27.6 221 258-486 397-640 (910)
104 KOG0278 Serine/threonine kinas 99.8 5.6E-19 1.2E-23 153.4 18.0 164 250-456 137-302 (334)
105 KOG0305 Anaphase promoting com 99.8 2.9E-18 6.2E-23 168.2 24.1 221 256-486 217-454 (484)
106 KOG0641 WD40 repeat protein [G 99.8 2.3E-17 5E-22 141.3 26.3 288 114-485 39-341 (350)
107 KOG0772 Uncharacterized conser 99.8 5.2E-19 1.1E-23 167.9 17.7 239 243-485 154-431 (641)
108 KOG0293 WD40 repeat-containing 99.8 6.3E-19 1.4E-23 163.1 16.9 228 124-452 282-514 (519)
109 KOG0639 Transducin-like enhanc 99.8 1.5E-18 3.3E-23 164.2 18.9 246 222-486 438-697 (705)
110 KOG0301 Phospholipase A2-activ 99.8 2.9E-18 6.2E-23 168.4 21.3 189 248-486 93-282 (745)
111 KOG1007 WD repeat protein TSSC 99.8 9.3E-18 2E-22 148.8 22.3 240 204-486 70-354 (370)
112 KOG0274 Cdc4 and related F-box 99.8 2.2E-18 4.9E-23 175.1 20.9 217 252-485 203-433 (537)
113 KOG0640 mRNA cleavage stimulat 99.8 2.6E-18 5.7E-23 153.6 17.7 168 248-417 164-345 (430)
114 KOG0647 mRNA export protein (c 99.8 8.1E-18 1.7E-22 150.2 20.7 221 255-486 26-274 (347)
115 KOG0270 WD40 repeat-containing 99.8 1.4E-17 3E-22 155.9 23.0 222 223-484 201-440 (463)
116 KOG0294 WD40 repeat-containing 99.8 6.4E-18 1.4E-22 151.6 19.6 223 249-486 36-274 (362)
117 KOG0299 U3 snoRNP-associated p 99.8 6.9E-18 1.5E-22 158.5 20.2 227 249-486 135-403 (479)
118 KOG0268 Sof1-like rRNA process 99.8 1.4E-18 3.1E-23 158.4 15.2 244 217-486 82-338 (433)
119 KOG0973 Histone transcription 99.8 3.1E-18 6.8E-23 176.6 19.6 203 256-482 13-238 (942)
120 KOG1332 Vesicle coat complex C 99.8 1.3E-18 2.8E-23 150.8 14.0 199 252-486 7-234 (299)
121 KOG0639 Transducin-like enhanc 99.8 2.4E-18 5.1E-23 162.9 15.5 197 251-486 414-656 (705)
122 KOG4378 Nuclear protein COP1 [ 99.8 2.6E-17 5.7E-22 155.7 22.5 209 219-479 96-309 (673)
123 KOG0308 Conserved WD40 repeat- 99.8 3.1E-18 6.8E-23 167.0 16.8 198 248-486 109-322 (735)
124 KOG0307 Vesicle coat complex C 99.8 8.4E-19 1.8E-23 181.5 12.8 226 216-486 82-320 (1049)
125 KOG0268 Sof1-like rRNA process 99.8 3.6E-18 7.7E-23 155.8 14.6 177 241-457 172-351 (433)
126 KOG0288 WD40 repeat protein Ti 99.8 2.7E-18 5.8E-23 159.1 13.6 226 248-486 167-410 (459)
127 KOG0300 WD40 repeat-containing 99.8 3.2E-17 7E-22 147.0 19.9 196 248-484 264-467 (481)
128 KOG0301 Phospholipase A2-activ 99.8 3.4E-17 7.4E-22 161.0 21.4 249 249-511 7-285 (745)
129 KOG0321 WD40 repeat-containing 99.8 3.3E-17 7.1E-22 159.6 19.3 210 251-486 139-384 (720)
130 KOG1408 WD40 repeat protein [F 99.8 1.8E-17 4E-22 163.0 17.4 194 252-452 455-714 (1080)
131 KOG2096 WD40 repeat protein [G 99.8 1.1E-16 2.4E-21 143.9 20.5 232 250-486 80-355 (420)
132 KOG1034 Transcriptional repres 99.8 1.4E-16 3.1E-21 143.8 20.2 233 222-479 113-369 (385)
133 KOG4328 WD40 protein [Function 99.7 1.1E-16 2.3E-21 150.4 19.7 232 249-483 179-440 (498)
134 KOG2048 WD40 repeat protein [G 99.7 4.8E-16 1E-20 152.7 24.9 266 123-486 37-312 (691)
135 KOG2106 Uncharacterized conser 99.7 3.5E-15 7.7E-20 141.8 29.2 238 235-486 179-470 (626)
136 KOG0650 WD40 repeat nucleolar 99.7 1E-16 2.2E-21 155.0 17.8 196 249-448 514-732 (733)
137 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 6.7E-15 1.5E-19 142.2 31.0 204 259-473 75-300 (300)
138 KOG2106 Uncharacterized conser 99.7 8.3E-15 1.8E-19 139.3 30.1 270 193-490 196-518 (626)
139 KOG4283 Transcription-coupled 99.7 1.9E-16 4.2E-21 140.8 17.7 197 251-486 38-269 (397)
140 KOG2055 WD40 repeat protein [G 99.7 3.4E-16 7.4E-21 147.2 19.5 233 188-486 214-458 (514)
141 KOG2048 WD40 repeat protein [G 99.7 1.1E-15 2.5E-20 150.1 24.0 236 187-486 25-268 (691)
142 KOG2055 WD40 repeat protein [G 99.7 6.7E-16 1.5E-20 145.3 21.4 187 257-482 304-501 (514)
143 KOG1539 WD repeat protein [Gen 99.7 5.7E-15 1.2E-19 148.3 28.9 296 124-486 173-599 (910)
144 KOG1273 WD40 repeat protein [G 99.7 2.7E-16 5.8E-21 141.2 16.9 220 259-486 26-272 (405)
145 KOG2445 Nuclear pore complex c 99.7 2E-15 4.3E-20 135.4 22.2 230 252-486 9-311 (361)
146 KOG1036 Mitotic spindle checkp 99.7 2.1E-15 4.5E-20 135.4 21.8 221 256-486 13-255 (323)
147 KOG1273 WD40 repeat protein [G 99.7 3.3E-15 7.3E-20 134.2 19.7 233 252-486 61-316 (405)
148 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 4.4E-14 9.6E-19 136.5 29.2 237 222-481 9-266 (300)
149 KOG4328 WD40 protein [Function 99.7 6.6E-15 1.4E-19 138.6 21.5 275 194-482 183-484 (498)
150 KOG0321 WD40 repeat-containing 99.7 4E-15 8.6E-20 145.3 20.7 257 206-486 60-340 (720)
151 KOG0290 Conserved WD40 repeat- 99.7 1.9E-14 4.1E-19 128.1 22.9 194 254-484 148-357 (364)
152 KOG0267 Microtubule severing p 99.7 6.1E-17 1.3E-21 159.8 7.9 194 279-486 16-219 (825)
153 KOG0270 WD40 repeat-containing 99.7 2.3E-15 4.9E-20 141.2 17.5 179 267-486 191-397 (463)
154 KOG0650 WD40 repeat nucleolar 99.7 2.5E-15 5.4E-20 145.6 18.1 230 248-486 392-673 (733)
155 KOG1007 WD repeat protein TSSC 99.7 2.2E-15 4.9E-20 133.8 16.2 161 254-451 168-361 (370)
156 KOG1063 RNA polymerase II elon 99.7 1.6E-14 3.5E-19 142.3 23.3 231 252-486 263-595 (764)
157 KOG0646 WD40 repeat protein [G 99.7 5.7E-15 1.2E-19 139.4 19.1 182 267-486 49-242 (476)
158 KOG1274 WD40 repeat protein [G 99.7 2.3E-14 4.9E-19 145.6 24.6 191 255-486 55-255 (933)
159 KOG1538 Uncharacterized conser 99.7 7.1E-15 1.5E-19 144.0 19.6 211 258-478 14-278 (1081)
160 KOG2445 Nuclear pore complex c 99.7 1.7E-14 3.7E-19 129.4 19.8 270 123-473 25-342 (361)
161 KOG0303 Actin-binding protein 99.6 7.1E-15 1.5E-19 135.9 17.5 194 251-486 76-287 (472)
162 KOG4227 WD40 repeat protein [G 99.6 3.2E-14 7E-19 131.3 19.9 234 250-486 50-380 (609)
163 KOG0307 Vesicle coat complex C 99.6 2.9E-15 6.3E-20 155.6 12.9 194 257-486 65-277 (1049)
164 KOG1517 Guanine nucleotide bin 99.6 3.2E-14 7E-19 146.1 20.1 189 260-486 1169-1374(1387)
165 KOG1063 RNA polymerase II elon 99.6 3.6E-13 7.8E-18 133.0 26.1 218 252-474 357-675 (764)
166 KOG0290 Conserved WD40 repeat- 99.6 4.3E-14 9.4E-19 125.8 17.1 199 253-486 93-311 (364)
167 KOG4378 Nuclear protein COP1 [ 99.6 4.8E-14 1E-18 133.9 17.3 217 258-484 36-271 (673)
168 KOG0649 WD40 repeat protein [G 99.6 1.7E-13 3.7E-18 119.1 18.8 213 222-479 30-262 (325)
169 KOG0303 Actin-binding protein 99.6 1E-13 2.2E-18 128.4 18.3 155 293-485 78-238 (472)
170 KOG0644 Uncharacterized conser 99.6 3.9E-15 8.5E-20 149.2 9.6 226 249-481 183-456 (1113)
171 KOG2919 Guanine nucleotide-bin 99.6 1.3E-13 2.7E-18 124.7 16.9 178 258-442 160-361 (406)
172 KOG0322 G-protein beta subunit 99.6 4.5E-14 9.7E-19 124.2 12.8 228 249-486 7-316 (323)
173 KOG1034 Transcriptional repres 99.6 1.7E-13 3.7E-18 124.1 16.7 161 252-452 34-212 (385)
174 KOG0642 Cell-cycle nuclear pro 99.6 2E-13 4.2E-18 132.0 18.0 245 203-463 300-573 (577)
175 KOG1538 Uncharacterized conser 99.5 3.4E-13 7.4E-18 132.3 18.9 194 249-451 46-293 (1081)
176 KOG1009 Chromatin assembly com 99.5 7.1E-14 1.5E-18 129.9 12.3 192 257-486 14-253 (434)
177 KOG0771 Prolactin regulatory e 99.5 1.7E-13 3.6E-18 128.3 14.7 187 260-486 148-347 (398)
178 KOG1310 WD40 repeat protein [G 99.5 1.6E-13 3.4E-18 132.0 14.4 203 250-486 44-297 (758)
179 KOG1188 WD40 repeat protein [G 99.5 9.9E-13 2.1E-17 119.9 17.9 218 220-450 90-345 (376)
180 PRK01742 tolB translocation pr 99.5 3.4E-12 7.4E-17 129.5 24.1 210 250-474 197-426 (429)
181 KOG1188 WD40 repeat protein [G 99.5 7E-13 1.5E-17 120.8 15.9 184 270-457 42-248 (376)
182 KOG1445 Tumor-specific antigen 99.5 2.1E-13 4.6E-18 133.0 12.5 187 263-486 586-787 (1012)
183 KOG0649 WD40 repeat protein [G 99.5 3.3E-11 7.2E-16 105.0 24.6 192 257-486 115-308 (325)
184 KOG1445 Tumor-specific antigen 99.5 7.3E-13 1.6E-17 129.4 14.9 226 210-486 592-837 (1012)
185 KOG0322 G-protein beta subunit 99.5 3.3E-12 7.2E-17 112.5 17.6 148 297-450 151-322 (323)
186 KOG0642 Cell-cycle nuclear pro 99.5 5.6E-13 1.2E-17 128.9 14.0 235 250-487 288-555 (577)
187 KOG1009 Chromatin assembly com 99.5 4.1E-13 8.8E-18 124.9 12.0 156 295-486 12-188 (434)
188 KOG1523 Actin-related protein 99.5 6.6E-12 1.4E-16 113.6 19.3 221 254-478 8-264 (361)
189 KOG2110 Uncharacterized conser 99.5 2.6E-11 5.7E-16 111.8 22.8 184 258-484 48-239 (391)
190 KOG2394 WD40 protein DMR-N9 [G 99.5 1.8E-12 3.9E-17 124.7 15.6 195 266-474 183-385 (636)
191 COG2319 FOG: WD40 repeat [Gene 99.4 1.2E-10 2.6E-15 117.1 29.0 198 223-472 133-337 (466)
192 KOG1334 WD40 repeat protein [G 99.4 7.9E-13 1.7E-17 125.7 11.4 240 250-490 136-463 (559)
193 KOG1587 Cytoplasmic dynein int 99.4 1.6E-11 3.6E-16 124.4 19.7 252 122-452 254-517 (555)
194 KOG1517 Guanine nucleotide bin 99.4 1.7E-11 3.6E-16 126.6 19.2 228 258-485 1066-1326(1387)
195 KOG1523 Actin-related protein 99.4 9.4E-12 2E-16 112.6 15.1 188 295-486 9-229 (361)
196 PRK11028 6-phosphogluconolacto 99.4 5.7E-10 1.2E-14 109.6 29.2 248 222-482 10-293 (330)
197 KOG1587 Cytoplasmic dynein int 99.4 4.8E-11 1E-15 121.0 21.7 225 224-486 222-465 (555)
198 KOG1963 WD40 repeat protein [G 99.4 2.5E-11 5.5E-16 123.5 19.2 226 258-486 18-315 (792)
199 PRK03629 tolB translocation pr 99.4 2.6E-10 5.6E-15 115.6 26.8 209 252-474 194-428 (429)
200 KOG2110 Uncharacterized conser 99.4 3.5E-11 7.5E-16 111.1 18.3 158 256-454 87-251 (391)
201 PF08662 eIF2A: Eukaryotic tra 99.4 8.2E-11 1.8E-15 105.3 20.4 152 260-459 9-186 (194)
202 KOG0771 Prolactin regulatory e 99.4 1E-11 2.2E-16 116.5 13.4 165 252-452 182-355 (398)
203 KOG2321 WD40 repeat protein [G 99.4 7.5E-11 1.6E-15 114.5 19.3 192 260-483 137-334 (703)
204 KOG1524 WD40 repeat-containing 99.3 1.7E-11 3.7E-16 117.9 14.2 189 254-486 12-250 (737)
205 PRK11028 6-phosphogluconolacto 99.3 6.2E-09 1.3E-13 102.3 32.2 191 258-451 81-304 (330)
206 COG2319 FOG: WD40 repeat [Gene 99.3 1.3E-09 2.7E-14 109.7 28.1 223 251-484 60-305 (466)
207 PRK02889 tolB translocation pr 99.3 2.4E-10 5.1E-15 116.0 22.7 183 252-477 191-384 (427)
208 KOG1272 WD40-repeat-containing 99.3 2.2E-12 4.8E-17 122.0 6.5 188 256-486 170-357 (545)
209 PRK05137 tolB translocation pr 99.3 4.3E-10 9.3E-15 114.6 22.9 185 250-479 195-392 (435)
210 KOG1524 WD40 repeat-containing 99.3 1.5E-10 3.3E-15 111.5 17.6 212 116-401 68-282 (737)
211 KOG2139 WD40 repeat protein [G 99.3 7.9E-10 1.7E-14 101.9 21.3 189 252-450 192-430 (445)
212 KOG1272 WD40-repeat-containing 99.3 8.2E-12 1.8E-16 118.2 8.4 181 250-476 204-392 (545)
213 PRK04922 tolB translocation pr 99.3 6.5E-10 1.4E-14 113.1 23.1 183 251-478 198-393 (433)
214 KOG1963 WD40 repeat protein [G 99.3 2.5E-09 5.5E-14 109.2 26.1 224 259-487 163-422 (792)
215 KOG4227 WD40 repeat protein [G 99.3 8.2E-10 1.8E-14 102.5 20.4 194 254-451 103-387 (609)
216 KOG2111 Uncharacterized conser 99.3 6.3E-09 1.4E-13 94.6 25.5 162 253-453 91-258 (346)
217 KOG2139 WD40 repeat protein [G 99.3 7.4E-10 1.6E-14 102.1 19.4 187 256-484 140-366 (445)
218 KOG4497 Uncharacterized conser 99.3 3.4E-09 7.4E-14 96.5 22.9 201 279-485 193-424 (447)
219 KOG2394 WD40 protein DMR-N9 [G 99.3 1.1E-10 2.5E-15 112.5 14.2 160 257-457 220-458 (636)
220 KOG3881 Uncharacterized conser 99.2 4.7E-10 1E-14 104.4 17.4 203 222-474 123-342 (412)
221 KOG2111 Uncharacterized conser 99.2 1.5E-09 3.2E-14 98.6 18.5 168 277-484 75-247 (346)
222 KOG1354 Serine/threonine prote 99.2 2.5E-10 5.4E-15 104.5 12.9 179 252-454 160-362 (433)
223 PRK04922 tolB translocation pr 99.2 6.9E-09 1.5E-13 105.6 25.0 174 255-473 246-432 (433)
224 KOG1240 Protein kinase contain 99.2 1.8E-09 3.9E-14 113.6 20.6 206 248-483 1040-1261(1431)
225 KOG4497 Uncharacterized conser 99.2 5.9E-11 1.3E-15 107.8 7.4 209 261-511 13-237 (447)
226 PRK01742 tolB translocation pr 99.2 2.3E-09 4.9E-14 109.0 19.8 191 277-483 184-391 (429)
227 PF08662 eIF2A: Eukaryotic tra 99.2 2.7E-09 5.8E-14 95.6 17.9 96 381-485 65-165 (194)
228 PRK02889 tolB translocation pr 99.2 1.3E-08 2.9E-13 103.2 25.1 175 255-474 238-425 (427)
229 TIGR02800 propeller_TolB tol-p 99.2 6.7E-09 1.4E-13 105.6 22.8 180 252-476 185-377 (417)
230 PRK05137 tolB translocation pr 99.2 1.2E-08 2.6E-13 104.0 24.5 177 252-474 241-433 (435)
231 KOG0280 Uncharacterized conser 99.1 4.7E-09 1E-13 94.4 17.5 220 219-482 90-320 (339)
232 KOG1240 Protein kinase contain 99.1 1.6E-08 3.4E-13 106.8 22.4 254 123-456 1061-1339(1431)
233 KOG3881 Uncharacterized conser 99.1 8.6E-09 1.9E-13 96.2 18.1 202 254-486 103-313 (412)
234 PRK00178 tolB translocation pr 99.1 4.1E-08 8.9E-13 100.1 24.8 184 251-479 193-389 (430)
235 KOG4547 WD40 repeat-containing 99.1 9.9E-09 2.2E-13 100.7 19.0 168 266-474 3-195 (541)
236 PRK04792 tolB translocation pr 99.0 6E-08 1.3E-12 98.8 23.6 208 252-474 213-447 (448)
237 KOG1310 WD40 repeat protein [G 99.0 1.3E-09 2.8E-14 105.5 9.8 164 291-490 45-229 (758)
238 PF02239 Cytochrom_D1: Cytochr 99.0 6.4E-07 1.4E-11 88.4 28.0 242 222-482 14-335 (369)
239 KOG0280 Uncharacterized conser 99.0 7.8E-08 1.7E-12 86.7 19.2 206 222-474 44-264 (339)
240 PRK01029 tolB translocation pr 99.0 1.7E-07 3.7E-12 94.9 24.4 190 253-479 181-386 (428)
241 PRK01029 tolB translocation pr 99.0 1.7E-07 3.8E-12 94.8 24.4 177 256-474 230-425 (428)
242 PRK03629 tolB translocation pr 99.0 1.6E-07 3.4E-12 95.3 23.2 194 278-483 180-393 (429)
243 KOG0974 WD-repeat protein WDR6 99.0 3.7E-08 7.9E-13 102.6 18.3 185 258-486 89-281 (967)
244 KOG1064 RAVE (regulator of V-A 99.0 4E-09 8.6E-14 114.8 11.6 190 252-460 2204-2407(2439)
245 KOG0974 WD-repeat protein WDR6 98.9 1.6E-08 3.4E-13 105.3 14.4 151 260-452 137-289 (967)
246 KOG2315 Predicted translation 98.9 2.4E-07 5.3E-12 90.5 21.7 224 193-474 163-411 (566)
247 KOG3914 WD repeat protein WDR4 98.9 2.4E-08 5.3E-13 93.7 14.2 162 258-459 64-231 (390)
248 PRK00178 tolB translocation pr 98.9 6.5E-07 1.4E-11 91.3 25.7 173 257-474 243-428 (430)
249 PF10282 Lactonase: Lactonase, 98.9 3.5E-05 7.6E-10 76.0 36.4 214 256-471 86-345 (345)
250 KOG0644 Uncharacterized conser 98.9 1.5E-09 3.2E-14 109.9 5.3 114 293-451 187-300 (1113)
251 KOG1334 WD40 repeat protein [G 98.8 5.3E-08 1.1E-12 93.4 13.8 204 249-456 225-471 (559)
252 TIGR02800 propeller_TolB tol-p 98.8 1.1E-06 2.3E-11 89.5 23.7 208 204-471 196-416 (417)
253 COG2706 3-carboxymuconate cycl 98.8 1.4E-05 3E-10 74.8 28.3 233 197-472 88-345 (346)
254 KOG2321 WD40 repeat protein [G 98.8 7.8E-07 1.7E-11 87.2 20.6 222 253-484 48-294 (703)
255 COG5170 CDC55 Serine/threonine 98.8 7.3E-08 1.6E-12 87.4 12.1 175 252-450 168-366 (460)
256 KOG1409 Uncharacterized conser 98.8 4.8E-07 1E-11 83.4 17.4 229 250-486 18-263 (404)
257 KOG1064 RAVE (regulator of V-A 98.8 5E-08 1.1E-12 106.6 11.6 132 220-416 2269-2407(2439)
258 KOG1409 Uncharacterized conser 98.8 8.2E-07 1.8E-11 81.9 17.7 152 251-406 109-271 (404)
259 KOG4547 WD40 repeat-containing 98.7 6.7E-07 1.4E-11 88.1 17.4 161 267-468 69-241 (541)
260 COG2706 3-carboxymuconate cycl 98.7 9E-05 1.9E-09 69.5 28.8 253 223-486 15-313 (346)
261 KOG4190 Uncharacterized conser 98.7 7.2E-08 1.6E-12 93.7 8.8 171 249-459 728-914 (1034)
262 KOG2315 Predicted translation 98.7 4.9E-05 1.1E-09 74.8 27.6 215 260-484 129-375 (566)
263 PF02239 Cytochrom_D1: Cytochr 98.6 6E-06 1.3E-10 81.6 21.8 162 275-478 14-186 (369)
264 PRK04792 tolB translocation pr 98.6 3.7E-06 8E-11 85.8 20.7 157 278-478 199-364 (448)
265 PF08450 SGL: SMP-30/Gluconola 98.5 0.00016 3.5E-09 67.7 27.7 181 259-482 42-245 (246)
266 PF10282 Lactonase: Lactonase, 98.5 0.00023 4.9E-09 70.2 29.9 225 257-482 37-310 (345)
267 PRK04043 tolB translocation pr 98.5 5.4E-05 1.2E-09 76.3 25.5 172 258-476 189-380 (419)
268 KOG1354 Serine/threonine prote 98.5 1.1E-06 2.3E-11 81.1 11.8 171 257-462 85-313 (433)
269 COG4946 Uncharacterized protei 98.5 1.6E-05 3.4E-10 76.6 19.9 163 267-474 331-499 (668)
270 KOG4714 Nucleoporin [Nuclear s 98.5 2.1E-06 4.4E-11 76.4 12.7 94 277-405 159-254 (319)
271 TIGR02658 TTQ_MADH_Hv methylam 98.5 0.00011 2.4E-09 71.2 25.4 212 264-483 53-320 (352)
272 KOG4532 WD40-like repeat conta 98.5 2.8E-05 6.1E-10 69.6 19.2 176 270-482 131-322 (344)
273 PF04762 IKI3: IKI3 family; I 98.5 6.7E-05 1.5E-09 82.5 26.0 212 256-483 75-324 (928)
274 KOG2041 WD40 repeat protein [G 98.4 7.1E-06 1.5E-10 82.6 15.9 223 220-481 89-326 (1189)
275 KOG1645 RING-finger-containing 98.4 1.5E-05 3.1E-10 75.3 16.9 219 250-474 187-441 (463)
276 KOG4714 Nucleoporin [Nuclear s 98.4 1.1E-06 2.3E-11 78.2 8.6 139 307-452 100-255 (319)
277 KOG0309 Conserved WD40 repeat- 98.4 1.2E-06 2.5E-11 88.4 9.5 213 257-474 25-256 (1081)
278 KOG2695 WD40 repeat protein [G 98.4 6.5E-07 1.4E-11 82.6 6.7 127 255-415 251-384 (425)
279 PF00400 WD40: WD domain, G-be 98.4 1.3E-06 2.8E-11 55.7 6.0 37 411-449 3-39 (39)
280 PF15492 Nbas_N: Neuroblastoma 98.3 0.00018 3.8E-09 65.6 20.7 194 260-464 47-272 (282)
281 PRK04043 tolB translocation pr 98.3 0.0002 4.2E-09 72.3 23.1 154 255-454 231-403 (419)
282 COG4946 Uncharacterized protei 98.3 0.00023 4.9E-09 68.8 21.9 186 252-482 260-462 (668)
283 PF00400 WD40: WD domain, G-be 98.3 3E-06 6.5E-11 54.0 6.3 36 289-324 3-39 (39)
284 TIGR03300 assembly_YfgL outer 98.3 0.00041 8.8E-09 69.5 24.2 168 270-484 192-372 (377)
285 KOG4190 Uncharacterized conser 98.2 3.4E-06 7.4E-11 82.3 8.3 199 219-460 752-957 (1034)
286 PLN02919 haloacid dehalogenase 98.2 9.3E-05 2E-09 82.9 20.9 173 259-455 685-892 (1057)
287 KOG0309 Conserved WD40 repeat- 98.2 6.2E-06 1.3E-10 83.3 9.5 197 250-452 108-340 (1081)
288 KOG3914 WD repeat protein WDR4 98.2 9E-06 2E-10 76.7 9.7 97 279-415 134-231 (390)
289 PLN02919 haloacid dehalogenase 98.2 0.00044 9.5E-09 77.6 24.7 204 258-486 625-881 (1057)
290 KOG2314 Translation initiation 98.2 8.4E-05 1.8E-09 73.1 15.6 178 258-478 212-408 (698)
291 KOG2314 Translation initiation 98.1 0.00038 8.2E-09 68.6 19.6 220 258-486 251-560 (698)
292 COG5354 Uncharacterized protei 98.1 0.00016 3.4E-09 70.6 16.6 172 260-485 226-421 (561)
293 KOG1832 HIV-1 Vpr-binding prot 98.1 3.7E-06 8E-11 86.5 5.6 210 249-481 1094-1320(1516)
294 KOG1912 WD40 repeat protein [G 98.1 7.1E-05 1.5E-09 76.4 14.3 155 257-450 16-185 (1062)
295 PF07433 DUF1513: Protein of u 98.1 0.00061 1.3E-08 63.9 19.6 192 262-486 56-279 (305)
296 KOG2066 Vacuolar assembly/sort 98.1 0.00013 2.8E-09 75.0 16.2 143 267-452 82-234 (846)
297 KOG2041 WD40 repeat protein [G 98.0 8.6E-05 1.9E-09 75.0 13.7 224 221-486 33-281 (1189)
298 KOG4532 WD40-like repeat conta 98.0 0.00059 1.3E-08 61.4 17.2 180 269-486 85-276 (344)
299 PF11768 DUF3312: Protein of u 98.0 0.00052 1.1E-08 68.7 18.6 78 369-453 254-331 (545)
300 COG5170 CDC55 Serine/threonine 98.0 3.2E-05 6.9E-10 70.6 8.6 201 256-462 26-321 (460)
301 KOG1275 PAB-dependent poly(A) 98.0 0.00017 3.7E-09 75.0 14.8 175 268-449 147-340 (1118)
302 PF11768 DUF3312: Protein of u 97.9 0.0071 1.5E-07 60.8 24.7 87 280-405 239-329 (545)
303 PF04762 IKI3: IKI3 family; I 97.9 0.012 2.5E-07 65.3 28.8 229 255-486 303-559 (928)
304 TIGR02658 TTQ_MADH_Hv methylam 97.9 0.017 3.6E-07 56.3 26.5 226 221-459 74-338 (352)
305 KOG2066 Vacuolar assembly/sort 97.9 0.00041 8.8E-09 71.5 15.7 182 257-486 40-228 (846)
306 COG5354 Uncharacterized protei 97.8 0.0012 2.7E-08 64.5 16.5 216 255-482 31-293 (561)
307 KOG3617 WD40 and TPR repeat-co 97.8 0.0013 2.8E-08 68.1 16.9 72 258-329 61-134 (1416)
308 PF13360 PQQ_2: PQQ-like domai 97.8 0.0041 8.9E-08 57.7 19.5 145 276-463 2-152 (238)
309 PF15492 Nbas_N: Neuroblastoma 97.7 0.015 3.3E-07 53.2 21.3 195 261-486 2-252 (282)
310 KOG2114 Vacuolar assembly/sort 97.7 0.0061 1.3E-07 63.6 20.6 198 263-486 30-237 (933)
311 TIGR03300 assembly_YfgL outer 97.7 0.019 4.2E-07 57.4 24.3 178 268-459 105-305 (377)
312 PF13360 PQQ_2: PQQ-like domai 97.7 0.0091 2E-07 55.3 20.4 175 267-481 36-219 (238)
313 PF04841 Vps16_N: Vps16, N-ter 97.7 0.049 1.1E-06 54.9 26.7 213 262-485 34-281 (410)
314 KOG1645 RING-finger-containing 97.7 0.00066 1.4E-08 64.5 12.0 165 279-483 175-351 (463)
315 PRK11138 outer membrane biogen 97.6 0.03 6.4E-07 56.4 24.8 148 268-462 206-364 (394)
316 PF06977 SdiA-regulated: SdiA- 97.6 0.025 5.5E-07 52.3 21.4 204 252-485 17-243 (248)
317 COG0823 TolB Periplasmic compo 97.6 0.0052 1.1E-07 61.8 18.1 192 252-485 188-391 (425)
318 KOG1008 Uncharacterized conser 97.6 2.9E-05 6.3E-10 77.6 1.7 187 215-451 71-275 (783)
319 KOG1920 IkappaB kinase complex 97.6 0.01 2.2E-07 64.4 20.3 212 256-480 68-306 (1265)
320 PF08450 SGL: SMP-30/Gluconola 97.5 0.094 2E-06 48.9 26.4 178 261-480 4-200 (246)
321 KOG1912 WD40 repeat protein [G 97.4 0.0026 5.7E-08 65.4 13.5 147 297-474 16-166 (1062)
322 KOG0882 Cyclophilin-related pe 97.4 0.0026 5.7E-08 61.4 12.3 199 254-461 7-241 (558)
323 KOG3621 WD40 repeat-containing 97.4 0.013 2.7E-07 60.1 17.3 121 220-351 51-180 (726)
324 KOG1832 HIV-1 Vpr-binding prot 97.4 0.00024 5.2E-09 73.6 5.3 169 295-479 1100-1282(1516)
325 PF14783 BBS2_Mid: Ciliary BBS 97.3 0.021 4.5E-07 45.0 14.6 103 299-446 2-109 (111)
326 PRK02888 nitrous-oxide reducta 97.3 0.026 5.7E-07 58.3 19.2 172 262-452 198-405 (635)
327 KOG0882 Cyclophilin-related pe 97.3 0.0041 8.8E-08 60.1 12.0 203 252-459 49-313 (558)
328 KOG2114 Vacuolar assembly/sort 97.2 0.12 2.6E-06 54.4 23.0 127 256-422 125-259 (933)
329 KOG1275 PAB-dependent poly(A) 97.2 0.0016 3.4E-08 68.2 9.3 95 385-486 185-290 (1118)
330 KOG1008 Uncharacterized conser 97.2 0.00013 2.8E-09 73.1 1.2 179 297-484 57-265 (783)
331 KOG2395 Protein involved in va 97.1 0.013 2.8E-07 58.0 14.2 208 267-513 344-571 (644)
332 PF00930 DPPIV_N: Dipeptidyl p 97.1 0.25 5.5E-06 48.8 23.9 221 256-479 42-343 (353)
333 PF08596 Lgl_C: Lethal giant l 97.1 0.15 3.2E-06 51.0 22.0 180 296-482 86-325 (395)
334 PF04053 Coatomer_WDAD: Coatom 97.1 0.022 4.9E-07 57.5 16.3 177 252-482 28-215 (443)
335 KOG4649 PQQ (pyrrolo-quinoline 97.0 0.062 1.3E-06 48.7 16.2 123 308-473 23-145 (354)
336 KOG3621 WD40 repeat-containing 97.0 0.0075 1.6E-07 61.7 11.6 150 299-486 36-193 (726)
337 PF03178 CPSF_A: CPSF A subuni 97.0 0.3 6.5E-06 47.6 22.6 204 278-486 3-260 (321)
338 PF08553 VID27: VID27 cytoplas 97.0 0.021 4.6E-07 61.0 15.0 199 277-513 504-722 (794)
339 KOG4640 Anaphase-promoting com 97.0 0.0039 8.4E-08 62.9 9.0 90 381-474 26-116 (665)
340 smart00320 WD40 WD40 repeats. 96.9 0.0022 4.9E-08 39.2 5.0 37 411-449 4-40 (40)
341 PF07433 DUF1513: Protein of u 96.9 0.28 6E-06 46.4 20.7 186 258-486 6-240 (305)
342 KOG4640 Anaphase-promoting com 96.9 0.0049 1.1E-07 62.2 9.5 92 257-351 21-115 (665)
343 smart00320 WD40 WD40 repeats. 96.8 0.0039 8.4E-08 38.1 5.5 30 295-324 11-40 (40)
344 PF14783 BBS2_Mid: Ciliary BBS 96.7 0.21 4.5E-06 39.5 15.0 67 259-328 2-73 (111)
345 PRK02888 nitrous-oxide reducta 96.6 0.065 1.4E-06 55.4 15.1 149 266-441 286-451 (635)
346 PF04053 Coatomer_WDAD: Coatom 96.6 0.27 5.8E-06 49.9 19.3 146 268-451 117-262 (443)
347 COG3386 Gluconolactonase [Carb 96.6 0.57 1.2E-05 45.0 20.6 101 381-484 168-277 (307)
348 PRK11138 outer membrane biogen 96.4 0.23 4.9E-06 50.0 17.6 138 267-450 256-393 (394)
349 KOG4649 PQQ (pyrrolo-quinoline 96.3 0.8 1.7E-05 41.8 20.0 109 268-416 23-132 (354)
350 PF08553 VID27: VID27 cytoplas 96.3 0.061 1.3E-06 57.6 13.0 92 390-486 545-642 (794)
351 KOG3617 WD40 and TPR repeat-co 96.3 0.01 2.2E-07 61.9 6.7 107 261-405 20-131 (1416)
352 KOG2079 Vacuolar assembly/sort 96.2 0.014 3.1E-07 62.5 7.7 79 267-348 98-179 (1206)
353 KOG2444 WD40 repeat protein [G 96.2 0.022 4.8E-07 50.6 7.5 142 270-452 33-178 (238)
354 COG3391 Uncharacterized conser 96.1 1.7 3.6E-05 43.5 22.8 174 259-476 76-265 (381)
355 KOG1920 IkappaB kinase complex 96.1 0.34 7.3E-06 53.2 17.5 152 296-486 68-264 (1265)
356 COG0823 TolB Periplasmic compo 96.1 0.18 3.8E-06 50.9 14.8 68 257-324 238-310 (425)
357 PF00780 CNH: CNH domain; Int 95.9 1.6 3.5E-05 41.3 23.6 134 266-405 5-165 (275)
358 PF03178 CPSF_A: CPSF A subuni 95.5 1.3 2.9E-05 43.1 18.1 137 224-405 62-202 (321)
359 PF12894 Apc4_WD40: Anaphase-p 95.5 0.051 1.1E-06 35.8 5.4 32 295-326 10-41 (47)
360 KOG2079 Vacuolar assembly/sort 95.2 0.043 9.3E-07 59.0 6.8 95 387-484 99-197 (1206)
361 PF05096 Glu_cyclase_2: Glutam 95.0 3 6.5E-05 38.7 21.7 187 252-482 38-250 (264)
362 PF02897 Peptidase_S9_N: Proly 95.0 1.8 3.8E-05 43.9 17.8 143 301-481 128-295 (414)
363 PHA02713 hypothetical protein; 94.8 0.85 1.8E-05 48.1 15.2 70 386-459 463-541 (557)
364 COG3391 Uncharacterized conser 94.7 5.2 0.00011 40.0 21.2 180 258-474 117-309 (381)
365 KOG1897 Damage-specific DNA bi 94.7 8.1 0.00018 42.1 25.4 184 267-458 460-665 (1096)
366 TIGR03075 PQQ_enz_alc_DH PQQ-d 94.7 6.6 0.00014 41.1 22.2 54 278-331 272-338 (527)
367 PF02897 Peptidase_S9_N: Proly 94.7 5.6 0.00012 40.2 26.5 213 258-474 125-381 (414)
368 PF14583 Pectate_lyase22: Olig 94.7 4.9 0.00011 39.5 20.3 215 263-485 42-304 (386)
369 PF06433 Me-amine-dh_H: Methyl 94.6 4.5 9.7E-05 39.0 19.3 192 261-462 99-331 (342)
370 KOG4499 Ca2+-binding protein R 94.5 3.5 7.5E-05 37.2 18.2 104 381-487 163-279 (310)
371 cd00216 PQQ_DH Dehydrogenases 94.4 2.8 6.1E-05 43.5 17.8 65 267-332 61-134 (488)
372 KOG4441 Proteins containing BT 94.4 4 8.7E-05 43.1 18.9 184 267-458 284-506 (571)
373 PRK13616 lipoprotein LpqB; Pro 94.4 4 8.7E-05 43.2 18.8 195 257-487 350-563 (591)
374 KOG2395 Protein involved in va 94.2 0.58 1.3E-05 46.9 11.1 94 391-486 398-495 (644)
375 PF12894 Apc4_WD40: Anaphase-p 94.1 0.19 4.2E-06 33.0 5.3 34 420-456 12-45 (47)
376 PF08596 Lgl_C: Lethal giant l 94.0 1.4 3.1E-05 44.0 13.9 59 411-472 78-144 (395)
377 KOG4441 Proteins containing BT 93.9 2.3 4.9E-05 45.0 15.8 186 261-455 327-550 (571)
378 cd00216 PQQ_DH Dehydrogenases 93.9 7.1 0.00015 40.5 19.4 31 432-462 405-435 (488)
379 PHA02713 hypothetical protein; 93.6 7.1 0.00015 41.3 18.9 197 278-484 273-522 (557)
380 COG5167 VID27 Protein involved 93.4 1.9 4.1E-05 43.3 13.0 146 267-451 478-632 (776)
381 KOG2444 WD40 repeat protein [G 93.4 0.24 5.2E-06 44.2 6.4 86 386-474 69-156 (238)
382 KOG1916 Nuclear protein, conta 92.9 0.24 5.2E-06 52.6 6.5 187 252-470 128-340 (1283)
383 PF05694 SBP56: 56kDa selenium 92.9 11 0.00024 37.6 18.5 71 262-332 135-236 (461)
384 PF00930 DPPIV_N: Dipeptidyl p 92.9 11 0.00023 37.3 19.6 226 170-440 101-346 (353)
385 PHA03098 kelch-like protein; P 92.2 8 0.00017 40.7 17.2 181 267-455 294-515 (534)
386 COG4590 ABC-type uncharacteriz 91.7 0.98 2.1E-05 44.5 8.6 169 252-459 216-394 (733)
387 PHA02790 Kelch-like protein; P 91.7 8.5 0.00018 39.8 16.3 177 267-454 271-473 (480)
388 PF14761 HPS3_N: Hermansky-Pud 91.6 9.7 0.00021 34.1 15.0 122 269-405 30-163 (215)
389 PF12234 Rav1p_C: RAVE protein 91.4 8.7 0.00019 40.6 15.7 65 261-325 34-103 (631)
390 PF12234 Rav1p_C: RAVE protein 91.3 4.9 0.00011 42.4 13.8 100 386-486 40-151 (631)
391 PF10313 DUF2415: Uncharacteri 91.3 0.75 1.6E-05 29.4 5.0 31 297-327 1-34 (43)
392 PF14583 Pectate_lyase22: Olig 91.0 17 0.00038 35.8 26.3 166 278-483 169-371 (386)
393 COG3204 Uncharacterized protei 90.8 14 0.00031 34.6 19.8 206 252-486 81-306 (316)
394 PF06977 SdiA-regulated: SdiA- 90.7 14 0.0003 34.3 17.2 150 296-484 21-192 (248)
395 PF00780 CNH: CNH domain; Int 90.5 16 0.00034 34.5 27.4 142 267-418 104-266 (275)
396 PF10647 Gmad1: Lipoprotein Lp 90.0 16 0.00036 34.0 20.1 189 258-487 25-233 (253)
397 PF14727 PHTB1_N: PTHB1 N-term 89.3 17 0.00036 36.6 15.2 145 309-486 38-197 (418)
398 COG3386 Gluconolactonase [Carb 89.3 22 0.00047 34.3 19.7 147 258-440 112-274 (307)
399 KOG1897 Damage-specific DNA bi 88.9 24 0.00053 38.7 16.5 163 279-483 752-933 (1096)
400 PF08728 CRT10: CRT10; InterP 88.4 32 0.0007 36.9 17.1 163 268-450 49-245 (717)
401 PF06433 Me-amine-dh_H: Methyl 88.2 26 0.00057 33.9 20.6 218 262-483 41-310 (342)
402 TIGR02604 Piru_Ver_Nterm putat 88.1 28 0.0006 34.6 16.2 58 426-484 128-204 (367)
403 COG5276 Uncharacterized conser 87.9 24 0.00053 33.2 20.3 153 290-486 80-236 (370)
404 TIGR02276 beta_rpt_yvtn 40-res 87.8 3.2 6.9E-05 26.0 6.2 40 431-471 1-41 (42)
405 PHA03098 kelch-like protein; P 87.7 19 0.00041 37.8 15.6 67 386-456 389-469 (534)
406 PF14655 RAB3GAP2_N: Rab3 GTPa 87.2 10 0.00023 38.0 12.2 79 381-461 313-408 (415)
407 PF11715 Nup160: Nucleoporin N 87.0 3.3 7.2E-05 43.7 9.4 75 385-459 156-256 (547)
408 TIGR03074 PQQ_membr_DH membran 86.4 36 0.00077 37.4 16.7 26 435-460 461-486 (764)
409 PRK13616 lipoprotein LpqB; Pro 86.4 25 0.00055 37.3 15.3 60 420-482 448-515 (591)
410 PF14870 PSII_BNR: Photosynthe 86.2 33 0.00071 33.0 16.9 96 255-351 143-242 (302)
411 PF10313 DUF2415: Uncharacteri 85.9 2.9 6.3E-05 26.8 4.9 31 257-287 1-35 (43)
412 KOG1916 Nuclear protein, conta 85.8 0.65 1.4E-05 49.5 3.1 74 253-326 177-265 (1283)
413 PRK10115 protease 2; Provision 85.6 59 0.0013 35.4 26.4 70 257-328 127-209 (686)
414 PF05694 SBP56: 56kDa selenium 85.5 43 0.00092 33.7 15.7 132 258-405 182-342 (461)
415 PF10168 Nup88: Nuclear pore c 85.2 51 0.0011 35.9 17.0 72 381-453 90-181 (717)
416 KOG3630 Nuclear pore complex, 84.7 16 0.00034 40.8 12.6 90 387-482 168-262 (1405)
417 PF07569 Hira: TUP1-like enhan 84.4 9.5 0.00021 34.7 9.7 70 383-457 18-101 (219)
418 PF10168 Nup88: Nuclear pore c 84.4 29 0.00063 37.7 14.7 89 298-405 86-179 (717)
419 PF08728 CRT10: CRT10; InterP 84.1 17 0.00037 39.0 12.5 109 267-404 113-245 (717)
420 COG3823 Glutamine cyclotransfe 83.9 31 0.00068 30.8 13.8 64 267-330 55-123 (262)
421 PHA02790 Kelch-like protein; P 83.9 33 0.00072 35.5 14.7 140 307-456 271-428 (480)
422 COG3490 Uncharacterized protei 83.8 39 0.00084 31.8 13.5 60 205-275 121-180 (366)
423 TIGR03075 PQQ_enz_alc_DH PQQ-d 83.7 61 0.0013 34.0 19.2 64 267-332 69-144 (527)
424 PF12657 TFIIIC_delta: Transcr 83.1 7.2 0.00016 34.0 8.1 30 298-327 87-122 (173)
425 TIGR02604 Piru_Ver_Nterm putat 82.9 52 0.0011 32.6 15.9 68 257-326 14-99 (367)
426 PF14655 RAB3GAP2_N: Rab3 GTPa 82.1 13 0.00027 37.5 10.2 86 247-332 298-404 (415)
427 KOG2280 Vacuolar assembly/sort 81.9 78 0.0017 33.9 16.2 62 425-486 220-282 (829)
428 PF14781 BBS2_N: Ciliary BBSom 81.8 28 0.0006 28.7 10.7 77 252-329 43-128 (136)
429 PF05096 Glu_cyclase_2: Glutam 81.6 46 0.001 31.1 16.2 127 289-459 35-165 (264)
430 KOG4460 Nuclear pore complex, 80.6 32 0.0007 35.0 12.1 76 256-331 103-203 (741)
431 cd00109 KU BPTI/Kunitz family 80.0 0.71 1.5E-05 31.4 0.5 17 4-20 15-31 (54)
432 COG3490 Uncharacterized protei 79.8 45 0.00097 31.4 11.9 96 389-486 82-184 (366)
433 PF07569 Hira: TUP1-like enhan 79.0 16 0.00034 33.3 9.1 64 266-330 20-99 (219)
434 PF07250 Glyoxal_oxid_N: Glyox 78.1 58 0.0012 30.1 12.7 74 384-461 126-207 (243)
435 TIGR03606 non_repeat_PQQ dehyd 78.1 85 0.0018 32.1 18.3 32 297-328 30-61 (454)
436 PHA02714 CD-30-like protein; P 77.1 1 2.3E-05 33.8 0.7 16 5-20 25-40 (110)
437 PF07995 GSDH: Glucose / Sorbo 76.3 80 0.0017 30.8 14.4 49 258-307 3-59 (331)
438 PF04841 Vps16_N: Vps16, N-ter 75.7 95 0.0021 31.4 21.1 30 257-286 81-110 (410)
439 PF07995 GSDH: Glucose / Sorbo 75.7 36 0.00078 33.2 11.3 26 298-324 3-28 (331)
440 PF14781 BBS2_N: Ciliary BBSom 74.8 47 0.001 27.4 14.1 125 301-459 3-133 (136)
441 PF03088 Str_synth: Strictosid 73.9 37 0.0008 25.8 8.8 39 276-314 36-74 (89)
442 PRK10115 protease 2; Provision 73.7 1.4E+02 0.0031 32.5 19.2 112 299-450 129-254 (686)
443 PF15390 DUF4613: Domain of un 72.9 82 0.0018 32.9 12.8 77 252-328 52-144 (671)
444 KOG4499 Ca2+-binding protein R 72.5 78 0.0017 28.9 14.1 142 256-430 108-262 (310)
445 PLN02153 epithiospecifier prot 72.3 1E+02 0.0022 30.2 16.2 24 432-455 251-288 (341)
446 TIGR02276 beta_rpt_yvtn 40-res 71.6 21 0.00046 22.1 5.9 39 266-304 1-41 (42)
447 COG3204 Uncharacterized protei 71.2 96 0.0021 29.4 14.8 154 295-486 84-257 (316)
448 KOG4460 Nuclear pore complex, 71.0 40 0.00086 34.4 9.9 89 298-405 105-198 (741)
449 KOG2377 Uncharacterized conser 70.7 1.2E+02 0.0027 30.5 13.7 69 261-329 27-99 (657)
450 COG4590 ABC-type uncharacteriz 70.4 17 0.00038 36.1 7.3 161 295-490 219-384 (733)
451 smart00564 PQQ beta-propeller 70.2 11 0.00024 22.0 4.1 27 433-459 6-32 (33)
452 COG5167 VID27 Protein involved 70.1 48 0.001 33.8 10.3 93 391-485 531-626 (776)
453 TIGR03548 mutarot_permut cycli 67.8 1.2E+02 0.0026 29.3 16.9 24 307-330 123-151 (323)
454 PF10214 Rrn6: RNA polymerase 65.6 2.2E+02 0.0048 31.5 23.0 72 254-325 77-175 (765)
455 PF14761 HPS3_N: Hermansky-Pud 64.5 27 0.00058 31.4 6.7 53 434-487 29-83 (215)
456 KOG1900 Nuclear pore complex, 64.4 95 0.0021 35.6 12.1 129 315-452 96-273 (1311)
457 PF09305 TACI-CRD2: TACI, cyst 64.1 2.2 4.7E-05 26.4 -0.0 15 4-18 5-19 (41)
458 PF14870 PSII_BNR: Photosynthe 64.1 1.4E+02 0.003 28.7 26.6 218 256-484 16-253 (302)
459 PF15390 DUF4613: Domain of un 63.9 1.9E+02 0.0042 30.3 17.1 189 257-486 20-225 (671)
460 KOG2247 WD40 repeat-containing 63.6 1.2 2.6E-05 44.4 -1.9 141 260-443 38-180 (615)
461 KOG2377 Uncharacterized conser 63.5 1.7E+02 0.0038 29.6 12.5 94 376-474 68-164 (657)
462 PF13570 PQQ_3: PQQ-like domai 63.2 25 0.00054 21.8 4.8 21 307-327 20-40 (40)
463 PF12657 TFIIIC_delta: Transcr 61.8 83 0.0018 27.3 9.5 28 425-452 89-122 (173)
464 PF14727 PHTB1_N: PTHB1 N-term 61.3 1.9E+02 0.0041 29.3 29.2 52 274-325 152-203 (418)
465 TIGR03547 muta_rot_YjhT mutatr 60.8 1.7E+02 0.0037 28.6 17.2 12 306-317 117-128 (346)
466 KOG3630 Nuclear pore complex, 60.3 41 0.0009 37.7 8.4 110 258-404 102-227 (1405)
467 PF10647 Gmad1: Lipoprotein Lp 60.1 1.5E+02 0.0032 27.6 16.8 95 382-480 72-182 (253)
468 PF07676 PD40: WD40-like Beta 59.4 37 0.00079 20.7 5.1 28 296-323 8-38 (39)
469 TIGR03548 mutarot_permut cycli 58.4 1.5E+02 0.0032 28.7 11.6 64 267-330 123-198 (323)
470 PLN00033 photosystem II stabil 57.1 2.2E+02 0.0047 28.7 17.3 65 257-322 239-305 (398)
471 PF01011 PQQ: PQQ enzyme repea 56.8 29 0.00063 21.3 4.2 27 435-461 2-28 (38)
472 KOG2247 WD40 repeat-containing 56.7 2.3 5E-05 42.5 -1.3 141 300-483 38-179 (615)
473 PLN02193 nitrile-specifier pro 55.2 2.6E+02 0.0056 28.9 16.1 70 386-456 328-415 (470)
474 PF14269 Arylsulfotran_2: Aryl 55.0 2E+02 0.0044 27.6 16.0 69 258-326 145-220 (299)
475 PF14779 BBS1: Ciliary BBSome 55.0 1E+02 0.0022 28.8 9.0 75 372-448 174-255 (257)
476 TIGR03118 PEPCTERM_chp_1 conse 54.8 2E+02 0.0044 27.6 20.8 76 393-473 218-307 (336)
477 TIGR03074 PQQ_membr_DH membran 54.8 3.4E+02 0.0073 30.1 22.6 65 267-331 194-283 (764)
478 PHA03035 hypothetical protein; 54.4 4.7 0.0001 31.8 0.3 11 8-18 54-64 (158)
479 PLN02153 epithiospecifier prot 53.8 2.2E+02 0.0048 27.7 14.3 24 307-330 85-113 (341)
480 smart00131 KU BPTI/Kunitz fami 52.5 5.4 0.00012 26.8 0.3 17 4-20 15-31 (53)
481 COG5276 Uncharacterized conser 50.4 2.3E+02 0.005 27.0 19.1 153 257-454 87-244 (370)
482 KOG1900 Nuclear pore complex, 46.9 2.9E+02 0.0062 32.0 12.2 76 254-329 176-275 (1311)
483 PRK13684 Ycf48-like protein; P 45.9 3E+02 0.0064 26.9 17.9 149 256-449 172-329 (334)
484 COG1520 FOG: WD40-like repeat 45.6 3.1E+02 0.0067 27.1 15.6 65 266-331 67-134 (370)
485 smart00036 CNH Domain found in 45.1 1.3E+02 0.0027 29.0 8.6 59 267-326 12-73 (302)
486 PF14339 DUF4394: Domain of un 44.2 2.6E+02 0.0056 25.7 9.8 75 255-329 25-106 (236)
487 PF05935 Arylsulfotrans: Aryls 41.4 4.2E+02 0.0092 27.4 14.6 53 262-316 153-209 (477)
488 PF01436 NHL: NHL repeat; Int 40.6 69 0.0015 18.1 4.2 23 300-322 5-27 (28)
489 PF11715 Nup160: Nucleoporin N 38.1 54 0.0012 34.6 5.3 33 299-331 217-253 (547)
490 COG1773 Rubredoxin [Energy pro 37.3 14 0.0003 25.1 0.4 10 6-15 9-18 (55)
491 KOG1896 mRNA cleavage and poly 37.2 7.2E+02 0.016 28.8 20.8 137 309-450 1047-1212(1366)
492 TIGR03606 non_repeat_PQQ dehyd 36.1 5E+02 0.011 26.7 20.0 57 252-308 25-90 (454)
493 PF12768 Rax2: Cortical protei 35.6 3.9E+02 0.0086 25.4 14.4 53 278-330 17-76 (281)
494 cd00730 rubredoxin Rubredoxin; 35.5 16 0.00034 24.4 0.5 11 6-16 7-17 (50)
495 PF12768 Rax2: Cortical protei 34.6 4.1E+02 0.0089 25.2 12.8 29 318-349 16-44 (281)
496 KOG2280 Vacuolar assembly/sort 34.5 6.4E+02 0.014 27.5 15.8 143 258-405 85-246 (829)
497 PLN02193 nitrile-specifier pro 34.4 5.3E+02 0.012 26.5 18.3 26 432-457 328-357 (470)
498 PF09003 Phage_integ_N: Bacter 34.2 15 0.00033 26.8 0.3 14 7-20 27-42 (75)
499 PF00414 MAP1B_neuraxin: Neura 33.9 20 0.00043 17.8 0.6 11 2-12 4-14 (17)
500 KOG3616 Selective LIM binding 33.8 81 0.0018 33.8 5.4 57 427-484 20-76 (1636)
No 1
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=5.1e-42 Score=308.37 Aligned_cols=413 Identities=23% Similarity=0.247 Sum_probs=287.7
Q ss_pred CCCCCCccccccccCccccccCCCCCCCCCCcccccCCCCCCCccccccc-ccccchhhhhhhhhcCCceEEecCCchhh
Q 037288 1 MPQELPGFYYDAEKNRYFPIKGPIPGTSRSSSTAAQKPISKQPTRATNSS-LTGATTSKLLQARELRGNVFSLSKGKCNF 79 (513)
Q Consensus 1 ~~~~~pg~y~d~~~~~yf~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~-~~~~~~~~l~~~r~~~g~~~~~~~~~~~~ 79 (513)
|-|+|||||||+||||||||.++-...+++.+++++++++++ ++...+ |++.+...+.-.|+..++...++.-...+
T Consensus 3 ~~p~~pg~yy~~ek~ryf~i~~~~~~~ss~~~tke~~~p~~~--~e~~~qkrTk~kgln~vfnrs~~l~~~qf~~~~~~~ 80 (425)
T KOG2695|consen 3 GLPFIPGYYYNSEKKRYFRISSGQSTPSSNIYTKERLKPGKR--FENISQKRTKGKGLNPVFNRSTYLFDRQFSQYPYSC 80 (425)
T ss_pred CCCCCCcceeccccceeEEccCCCCCCCccchhhhcCCcchh--hhhhhHHhhhhcccccccchhhhhhhhhhhhccchh
Confidence 678999999999999999996522222223455444444443 345555 77777777777888888888888888899
Q ss_pred HHHHHHHhccCCeEEEEcccccccchhheeeeeeeeCCCCceeeeeEEeccccCeEEEEEeecccccccceeEEeeeccc
Q 037288 80 KEEFQKRLISQPVVWRYEATNQTGDITLEQIELNVQTPEGQFRTDVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVW 159 (513)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~tg~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~ 159 (513)
+++.++.+++.+++|.+ ... +++.+..+..+.++++.+.+.+ .|+..|.+..-...++.+. +..++..+....
T Consensus 81 rd~~~~~~~~~~v~~~~-~~~-~gs~l~k~~~~~~~t~~~lt~k----~gs~~Gc~~~~~~~~~~~~-e~~v~~~~~~~~ 153 (425)
T KOG2695|consen 81 RDDRDYCAKNLKVINLR-QLP-VGTELQKIGWLREVTTIILTSK----NGSILGCCLTPEDKSGVAN-EKYTSEGSIQDF 153 (425)
T ss_pred HHHHHHHHhhcceeeee-cCC-ccHHHHHhhhhhhccceeeecc----CcceeeeEeeecccccccc-ceeEeccccccc
Confidence 99999999999999999 555 8899999998889999988866 6777777777666555433 344444433333
Q ss_pred cccccccccccCCCCCccccCcceeeecccceEEEecCCCCccccCCCcccceeeeeccccCCCccEEEEecCCCCCCCC
Q 037288 160 PRIKDNKTESSKAPEHIWRLNKASILMPSSVSCIKLFGKHPSCATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGP 239 (513)
Q Consensus 160 ~~~~~~~~~~~~~~~~~w~p~~~~~~~~s~i~si~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 239 (513)
| .++ +. .+|.|-. +.. .+.+.|..+......+-.++....-. .
T Consensus 154 p---~~~-----v~-l~~~~~~----hL~---------------------~~~~~cfv~ls~~~s~e~~~~~s~~~---~ 196 (425)
T KOG2695|consen 154 P---LSR-----IG-LSNNPIS----HLV---------------------CNAMQCFVSLSPSLSNEGQFHISTYN---Q 196 (425)
T ss_pred c---ccc-----cc-ccccCHH----Hhh---------------------hhhHhheeecCCCcccceEeehhhhh---h
Confidence 3 233 55 6775431 111 12222222222222222121111000 0
Q ss_pred CcccccCceeEEeccccC-cEEEEEEcC--CCCEEEEEeCCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeC
Q 037288 240 NFSIIRRSTMHLVASFKC-TVWTADFCT--NPSQAVIGTNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFR 316 (513)
Q Consensus 240 ~~~~~~~~~~~~~~~h~~-~V~~~~~s~--~g~~l~s~s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~ 316 (513)
..+- .....+...+. ..+.++|+- .|-.+++|.+.+|.+-|+++|....+. .+++|.+++|+..+++++.|++
T Consensus 197 s~pe---~n~~~~~SlQi~~a~~CawSlni~gyhfs~G~sqqv~L~nvetg~~qsf~-sksDVfAlQf~~s~nLv~~GcR 272 (425)
T KOG2695|consen 197 SLPE---SNNYMLCSLQIPKAWSCAWSLNIMGYHFSVGLSQQVLLTNVETGHQQSFQ-SKSDVFALQFAGSDNLVFNGCR 272 (425)
T ss_pred cccc---CCCCceeeecCCcchhhhhhhccceeeecccccceeEEEEeecccccccc-cchhHHHHHhcccCCeeEeccc
Confidence 0010 00111111111 224446654 344566778888999999998765544 7889999999999999999999
Q ss_pred CCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecC
Q 037288 317 NGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMD 396 (513)
Q Consensus 317 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~d 396 (513)
+|.|..+|+|.... |..++.+.+.|+++++++..+..++++|++.+++
T Consensus 273 ngeI~~iDLR~rnq--------------------------------G~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~ 320 (425)
T KOG2695|consen 273 NGEIFVIDLRCRNQ--------------------------------GNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMT 320 (425)
T ss_pred CCcEEEEEeeeccc--------------------------------CCCcceEEEEcCcchhhhhhhccccceEeeccCc
Confidence 99999999998743 2355778999999999998888889999999999
Q ss_pred CeEEEEecCCCCcc-ceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCe----EEEEE
Q 037288 397 GTVKLYDHRLTTRG-AVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVP----SAVCW 471 (513)
Q Consensus 397 g~i~lwd~~~~~~~-~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v----~~v~~ 471 (513)
|+|++||+|..+.+ .+++|+||.+....+.+.+++++..++++|.|+..+||.++.|+++.++......+ .+++|
T Consensus 321 gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~ 400 (425)
T KOG2695|consen 321 GKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAF 400 (425)
T ss_pred CceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceeh
Confidence 99999999954433 59999999998888888889999999999999999999999999999987655433 33333
Q ss_pred cCCCceEEeeCCCeeeeeccCCcccceeeeeeccceeee
Q 037288 472 RTQRSMGPQIEGKIHEEFDLGQRHSWEAWIGTQEGLFRM 510 (513)
Q Consensus 472 ~p~~~~~~t~~~~~~~~~~~~~~~~~~~~~gs~~g~~~~ 510 (513)
... +.......|+|++.++++|-+
T Consensus 401 ~sr---------------~~k~~~g~G~ll~~re~Ly~f 424 (425)
T KOG2695|consen 401 DSR---------------LGKARGGPGLLLAVREDLYCF 424 (425)
T ss_pred hcc---------------cccccCCCeeEeeeccceecc
Confidence 322 134445788999999998854
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=7.8e-38 Score=288.26 Aligned_cols=319 Identities=13% Similarity=0.090 Sum_probs=246.1
Q ss_pred hhhhhhhhhcCCceEEecCCchhhHHHHHHHhccCCeEE---------------EEcccccccchhheeeeeeeeCCCCc
Q 037288 56 TSKLLQARELRGNVFSLSKGKCNFKEEFQKRLISQPVVW---------------RYEATNQTGDITLEQIELNVQTPEGQ 120 (513)
Q Consensus 56 ~~~l~~~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~g~ 120 (513)
+.+|..+|+. +..+|.+|+..+-+.+..+...|.-= ....++...+.++...+ ++.
T Consensus 115 p~eL~~AR~~---ia~ySl~Ra~~Rl~k~re~~e~p~~~~~~~~~~~~k~~~~~~l~~SQ~gd~rPis~~~---fS~--- 185 (459)
T KOG0272|consen 115 PVELRVARLW---IANYSLERAKLRLQKARERREIPDTEKALSRKEALKHLQSLELVCSQVGDTRPISGCS---FSR--- 185 (459)
T ss_pred CHHHHHHHHH---HHhccHHHHHHHHHHHHHhhcCCcchhhhHHHHHHHHhhhhhhhhhhccCCCcceeeE---eec---
Confidence 4578888887 77777777766664444443333320 00011122333444333 333
Q ss_pred eeeeeEEeccccCeEEEEEeecccccccceeEEeeeccccccccccccccCCCCCccccCcceeeecccceEEEecCCCC
Q 037288 121 FRTDVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNKTESSKAPEHIWRLNKASILMPSSVSCIKLFGKHP 200 (513)
Q Consensus 121 ~~~~~l~tg~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~s~i~si~~~~~~~ 200 (513)
+.+.|+||+.+|.+++|++ +..+....++.+ ..++..+.|+|....+.+
T Consensus 186 -ds~~laT~swsG~~kvW~~--~~~~~~~~l~gH--------------~~~v~~~~fhP~~~~~~l-------------- 234 (459)
T KOG0272|consen 186 -DSKHLATGSWSGLVKVWSV--PQCNLLQTLRGH--------------TSRVGAAVFHPVDSDLNL-------------- 234 (459)
T ss_pred -CCCeEEEeecCCceeEeec--CCcceeEEEecc--------------ccceeeEEEccCCCccce--------------
Confidence 3468999999999999998 332223333333 333777777776211111
Q ss_pred ccccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeCC-eE
Q 037288 201 SCATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNL-GA 279 (513)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~-~i 279 (513)
..+..+|.+.+|.+.+. ..+..+.+|...|..++|+|+|++|++++-+ +-
T Consensus 235 -----------------at~s~Dgtvklw~~~~e------------~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tW 285 (459)
T KOG0272|consen 235 -----------------ATASADGTVKLWKLSQE------------TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTW 285 (459)
T ss_pred -----------------eeeccCCceeeeccCCC------------cchhhhhcchhhheeeeecCCCceeeecccccch
Confidence 12345788877776632 2356699999999999999999999998755 58
Q ss_pred EEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEe
Q 037288 280 AMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQW 358 (513)
Q Consensus 280 ~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w 358 (513)
++||++++..+.... |...|.+++|++||.++++|+.|..-+|||+|+++.+. .+.+|..+|.+|+|
T Consensus 286 RlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im---~L~gH~k~I~~V~f--------- 353 (459)
T KOG0272|consen 286 RLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIM---FLAGHIKEILSVAF--------- 353 (459)
T ss_pred hhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEE---EecccccceeeEeE---------
Confidence 999999998655544 77789999999999999999999999999999999855 89999999999554
Q ss_pred ecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcC-CCCEEE
Q 037288 359 FELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQ-SERFVM 437 (513)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~-~g~~l~ 437 (513)
+|+|..||||+.|++++|||+| ....+.++.+|.+.|+. +.|+| .|.+|+
T Consensus 354 -------------------------sPNGy~lATgs~Dnt~kVWDLR--~r~~ly~ipAH~nlVS~--Vk~~p~~g~fL~ 404 (459)
T KOG0272|consen 354 -------------------------SPNGYHLATGSSDNTCKVWDLR--MRSELYTIPAHSNLVSQ--VKYSPQEGYFLV 404 (459)
T ss_pred -------------------------CCCceEEeecCCCCcEEEeeec--ccccceecccccchhhh--eEecccCCeEEE
Confidence 6699999999999999999999 66689999999999988 88998 789999
Q ss_pred EEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCC
Q 037288 438 SGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGK 484 (513)
Q Consensus 438 sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~ 484 (513)
+++.|++++||+..+++++.++.+|++.|.++.+++++..++|++-|
T Consensus 405 TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~D 451 (459)
T KOG0272|consen 405 TASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFD 451 (459)
T ss_pred EcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccC
Confidence 99999999999999999999999999999999999999999998877
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-35 Score=270.38 Aligned_cols=300 Identities=17% Similarity=0.190 Sum_probs=240.2
Q ss_pred eeCCCCceeeeeEEeccccCeEEEEEeecccccccceeEEeeeccccccccccccccCCCCCccccCcceeeecccceEE
Q 037288 114 VQTPEGQFRTDVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNKTESSKAPEHIWRLNKASILMPSSVSCI 193 (513)
Q Consensus 114 ~~~~~g~~~~~~l~tg~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~s~i~si 193 (513)
.++|+|. .|++|+.|-++|+|++.+.... . .-+.+.+-+.++.|+|++.-+.
T Consensus 122 ~fsp~g~----~l~tGsGD~TvR~WD~~TeTp~--~--------------t~KgH~~WVlcvawsPDgk~iA-------- 173 (480)
T KOG0271|consen 122 QFSPTGS----RLVTGSGDTTVRLWDLDTETPL--F--------------TCKGHKNWVLCVAWSPDGKKIA-------- 173 (480)
T ss_pred EecCCCc----eEEecCCCceEEeeccCCCCcc--e--------------eecCCccEEEEEEECCCcchhh--------
Confidence 3777664 6999999999999999655422 1 2333344477888888833322
Q ss_pred EecCCCCccccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcC-----CC
Q 037288 194 KLFGKHPSCATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCT-----NP 268 (513)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~-----~g 268 (513)
++..+|.+.+|+..+.... ...+.+|...|.+++|.| ..
T Consensus 174 -------------------------SG~~dg~I~lwdpktg~~~-----------g~~l~gH~K~It~Lawep~hl~p~~ 217 (480)
T KOG0271|consen 174 -------------------------SGSKDGSIRLWDPKTGQQI-----------GRALRGHKKWITALAWEPLHLVPPC 217 (480)
T ss_pred -------------------------ccccCCeEEEecCCCCCcc-----------cccccCcccceeEEeecccccCCCc
Confidence 3446888888887766555 345899999999999976 56
Q ss_pred CEEEEEe-CCeEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEE
Q 037288 269 SQAVIGT-NLGAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSR 346 (513)
Q Consensus 269 ~~l~s~s-~~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~ 346 (513)
++||+++ |+.++|||+..+.++..+. |..+|+|+.|--+ .+|++|+.|++|++|+...+.. .+.+.+|...|+.
T Consensus 218 r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~---~r~lkGHahwvN~ 293 (480)
T KOG0271|consen 218 RRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKL---CRELKGHAHWVNH 293 (480)
T ss_pred cceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEecCCCceEEEEEccchhH---HHhhcccchheee
Confidence 7888876 5669999999998877665 8899999999643 5899999999999999988776 5699999999999
Q ss_pred EeeCC---------------------------------------eEEEeE-------eecccCcccceeEeecCCCceEE
Q 037288 347 LQRND---------------------------------------RVTNEQ-------WFELKANIWPSHTTFMPSSISCL 380 (513)
Q Consensus 347 v~~~~---------------------------------------~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~ 380 (513)
++.+. ++++|+ |+....+....+...| ..+..-
T Consensus 294 lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgH-q~lVn~ 372 (480)
T KOG0271|consen 294 LALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGH-QALVNH 372 (480)
T ss_pred eeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhch-hhheee
Confidence 98772 367776 5544433221222233 344444
Q ss_pred EEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec
Q 037288 381 QSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDK 460 (513)
Q Consensus 381 ~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~ 460 (513)
+.|+||+.++|+++.|..|++||.+ ..+.+.+|.||...|+. ++|+.|.++|++|+.|.++++|++++.++...+.
T Consensus 373 V~fSPd~r~IASaSFDkSVkLW~g~--tGk~lasfRGHv~~VYq--vawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLp 448 (480)
T KOG0271|consen 373 VSFSPDGRYIASASFDKSVKLWDGR--TGKFLASFRGHVAAVYQ--VAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLP 448 (480)
T ss_pred EEECCCccEEEEeecccceeeeeCC--CcchhhhhhhccceeEE--EEeccCccEEEEcCCCceEEEEEeeeeeecccCC
Confidence 6999999999999999999999998 66699999999999977 9999999999999999999999999999999999
Q ss_pred CCCCCeEEEEEcCCCceEEeeCCCee
Q 037288 461 FSNSVPSAVCWRTQRSMGPQIEGKIH 486 (513)
Q Consensus 461 ~~~~~v~~v~~~p~~~~~~t~~~~~~ 486 (513)
+|...|.++.|+|++..+++.+.|-.
T Consensus 449 Gh~DEVf~vDwspDG~rV~sggkdkv 474 (480)
T KOG0271|consen 449 GHADEVFAVDWSPDGQRVASGGKDKV 474 (480)
T ss_pred CCCceEEEEEecCCCceeecCCCceE
Confidence 99999999999999999998887743
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.4e-35 Score=265.26 Aligned_cols=275 Identities=17% Similarity=0.268 Sum_probs=211.4
Q ss_pred cCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeCC-eEEEEECCCCcEEEEee-eCCCeEEEEEecCC
Q 037288 231 LDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNL-GAAMVDMETGMASWVCR-SKSDILAQQVIHSG 308 (513)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~-~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~ 308 (513)
+..|+.+|++.++..++ ..+.||.++|.|+.|+|+|..|++|+.+ ++++||+.+..+..+.. |...|.|++|+|||
T Consensus 92 vyqpqavfrvrpvtrCs--sS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDg 169 (480)
T KOG0271|consen 92 VYQPQAVFRVRPVTRCS--SSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDG 169 (480)
T ss_pred Eeccchhhcccccceec--cccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCc
Confidence 34788889999988875 5699999999999999999999999654 59999999998887776 88889999999999
Q ss_pred cEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCC--------eEEEeE-------eecccCcccceeEeec
Q 037288 309 NVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND--------RVTNEQ-------WFELKANIWPSHTTFM 373 (513)
Q Consensus 309 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~--------~~~s~~-------w~~~~~~~~~~~~~~~ 373 (513)
..||+|+.||+|++||..+++.. -+.+.+|...|++++|.| .+++++ |+...+... .....|
T Consensus 170 k~iASG~~dg~I~lwdpktg~~~--g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~-~~lsgH 246 (480)
T KOG0271|consen 170 KKIASGSKDGSIRLWDPKTGQQI--GRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCV-RTLSGH 246 (480)
T ss_pred chhhccccCCeEEEecCCCCCcc--cccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEE-EEeccC
Confidence 99999999999999999988764 468999999999999998 455554 887665432 111233
Q ss_pred CCCceEEEE---------------------------------------------------EcCCCC--------------
Q 037288 374 PSSISCLQS---------------------------------------------------LQLYDQ-------------- 388 (513)
Q Consensus 374 ~~~v~~~~~---------------------------------------------------~~~~~~-------------- 388 (513)
..+|+|+.+ |.|.++
T Consensus 247 T~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~ 326 (480)
T KOG0271|consen 247 TASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALE 326 (480)
T ss_pred ccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHH
Confidence 445555543 111122
Q ss_pred -----------EEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 037288 389 -----------YFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVF 457 (513)
Q Consensus 389 -----------~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~ 457 (513)
.|++|+.|.++.+|+... ..+++..+.+|...|.. +.||||+++|++++.|..|++||.++|+.+.
T Consensus 327 rY~~~~~~~~erlVSgsDd~tlflW~p~~-~kkpi~rmtgHq~lVn~--V~fSPd~r~IASaSFDkSVkLW~g~tGk~la 403 (480)
T KOG0271|consen 327 RYEAVLKDSGERLVSGSDDFTLFLWNPFK-SKKPITRMTGHQALVNH--VSFSPDGRYIASASFDKSVKLWDGRTGKFLA 403 (480)
T ss_pred HHHHhhccCcceeEEecCCceEEEecccc-cccchhhhhchhhheee--EEECCCccEEEEeecccceeeeeCCCcchhh
Confidence 255555555555555431 22367788899998877 9999999999999999999999999999999
Q ss_pred EecCCCCCeEEEEEcCCCceEEeeCCCeeee-eccCCcccceeeeeeccceeeeecC
Q 037288 458 EDKFSNSVPSAVCWRTQRSMGPQIEGKIHEE-FDLGQRHSWEAWIGTQEGLFRMNWS 513 (513)
Q Consensus 458 ~~~~~~~~v~~v~~~p~~~~~~t~~~~~~~~-~~~~~~~~~~~~~gs~~g~~~~~~~ 513 (513)
+|++|-.+|..++|+.+..++++++.|---. ++.....-..-+-|..|-+|-+.||
T Consensus 404 sfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDws 460 (480)
T KOG0271|consen 404 SFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWS 460 (480)
T ss_pred hhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEec
Confidence 9999999999999999999999998885521 1121111222345667777766665
No 5
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.97 E-value=1.5e-30 Score=257.97 Aligned_cols=197 Identities=16% Similarity=0.194 Sum_probs=180.9
Q ss_pred eEEeccccCcEEEEEEcCCCCEEEEEeCC-eEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECC
Q 037288 249 MHLVASFKCTVWTADFCTNPSQAVIGTNL-GAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVR 326 (513)
Q Consensus 249 ~~~~~~h~~~V~~~~~s~~g~~l~s~s~~-~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~ 326 (513)
..++.||.++|+.+.|+|+.++|++++++ ++++|.+.+..++..+. |..+|+.++|+|-|.++|+|+.|++-++|...
T Consensus 444 ~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d 523 (707)
T KOG0263|consen 444 SRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTD 523 (707)
T ss_pred eEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecc
Confidence 45599999999999999999999999875 59999999998877776 77889999999999999999999999999988
Q ss_pred CCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCC
Q 037288 327 KRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRL 406 (513)
Q Consensus 327 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~ 406 (513)
...+ ++.+.+|...|.|+ .|+|+.+|+++||.|.+|++||+.
T Consensus 524 ~~~P---lRifaghlsDV~cv----------------------------------~FHPNs~Y~aTGSsD~tVRlWDv~- 565 (707)
T KOG0263|consen 524 HNKP---LRIFAGHLSDVDCV----------------------------------SFHPNSNYVATGSSDRTVRLWDVS- 565 (707)
T ss_pred cCCc---hhhhcccccccceE----------------------------------EECCcccccccCCCCceEEEEEcC-
Confidence 7655 67999999998885 456699999999999999999997
Q ss_pred CCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288 407 TTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIH 486 (513)
Q Consensus 407 ~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~ 486 (513)
....++.|.||.++|++ ++|+|+|++|++|+.||.|.+||+.+++++..+..|.+.|.++.|+.++.+||++++|-.
T Consensus 566 -~G~~VRiF~GH~~~V~a--l~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~Dns 642 (707)
T KOG0263|consen 566 -TGNSVRIFTGHKGPVTA--LAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNS 642 (707)
T ss_pred -CCcEEEEecCCCCceEE--EEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCe
Confidence 55599999999999988 999999999999999999999999999999999999999999999999999999999876
No 6
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.97 E-value=4.2e-28 Score=209.63 Aligned_cols=234 Identities=13% Similarity=0.121 Sum_probs=187.5
Q ss_pred ccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeCCe-EEEEECCCCcEEEEeeeCCCeEEE
Q 037288 224 GSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNLG-AAMVDMETGMASWVCRSKSDILAQ 302 (513)
Q Consensus 224 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~~-i~vwd~~~~~~~~~~~~~~~V~~l 302 (513)
-.+.+|++.+...- .+.++.+|++.|.++.|..+|+.+++|++++ ++|||++...+.+.+++.++|+++
T Consensus 61 qhvRlyD~~S~np~----------Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~v 130 (311)
T KOG0315|consen 61 QHVRLYDLNSNNPN----------PVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTV 130 (311)
T ss_pred CeeEEEEccCCCCC----------ceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceE
Confidence 35666666643321 3678999999999999999999999998765 999999998888999999999999
Q ss_pred EEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCC--eEEEeE--------eecccCc----ccce
Q 037288 303 QVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND--RVTNEQ--------WFELKAN----IWPS 368 (513)
Q Consensus 303 ~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~--~~~s~~--------w~~~~~~----~~~~ 368 (513)
..+|+...|++|..+|.|++||+.+..... .-.+....+|.++...+ .++++. |++.... +.|.
T Consensus 131 vlhpnQteLis~dqsg~irvWDl~~~~c~~--~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~ 208 (311)
T KOG0315|consen 131 VLHPNQTELISGDQSGNIRVWDLGENSCTH--ELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPV 208 (311)
T ss_pred EecCCcceEEeecCCCcEEEEEccCCcccc--ccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEh
Confidence 999999999999999999999999875432 23455667889988888 444433 8887643 3344
Q ss_pred eEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEE
Q 037288 369 HTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIW 448 (513)
Q Consensus 369 ~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vw 448 (513)
..+.....-.-...++|++++||+++.|.+++||+.... -+....+++|...+.. ++||.||.||++|+.|+.+++|
T Consensus 209 ~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-~kle~~l~gh~rWvWd--c~FS~dg~YlvTassd~~~rlW 285 (311)
T KOG0315|consen 209 HKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-FKLELVLTGHQRWVWD--CAFSADGEYLVTASSDHTARLW 285 (311)
T ss_pred hheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc-eeeEEEeecCCceEEe--eeeccCccEEEecCCCCceeec
Confidence 455544433333478999999999999999999998622 2355678899988755 9999999999999999999999
Q ss_pred eCCCCeEEEEecCCCCCeEEEEEc
Q 037288 449 SIRSGELVFEDKFSNSVPSAVCWR 472 (513)
Q Consensus 449 d~~~~~~~~~~~~~~~~v~~v~~~ 472 (513)
++..++.+..+.+|..+..+++.+
T Consensus 286 ~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 286 DLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred ccccCceeeecCCcccccEEEEee
Confidence 999999999998887776666654
No 7
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.97 E-value=1e-28 Score=218.24 Aligned_cols=231 Identities=17% Similarity=0.148 Sum_probs=196.3
Q ss_pred EEeccccCcEEEEEEcCCCCEEEEEeC-CeEEEEECCCCcEEEEeeeC-CCeEEEEEecCCcEEEEEeCCCeEEEEECCC
Q 037288 250 HLVASFKCTVWTADFCTNPSQAVIGTN-LGAAMVDMETGMASWVCRSK-SDILAQQVIHSGNVVLCGFRNGAIVTVDVRK 327 (513)
Q Consensus 250 ~~~~~h~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~~~~~~~~~~-~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~ 327 (513)
.+|++|...|+++.|++|.+.+++++. +.+.|||.-+......+.-+ ..|..++|+|.|+++|+|+.|..+.||++..
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~ 128 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLST 128 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccc
Confidence 569999999999999999999999875 55999999888777767644 4599999999999999999999999999986
Q ss_pred Cccc---cccccccccCcCeEEEeeCC--eEEEeE-------eecccCcccceeEeecCCCceEEEEEcC-CCCEEEEEe
Q 037288 328 RQRG---CSSRAGRRHRIPYSRLQRND--RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQL-YDQYFLASS 394 (513)
Q Consensus 328 ~~~~---~~~~~~~~h~~~v~~v~~~~--~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~s 394 (513)
.+.. +..+.+.+|.+.+.++.|-+ .+++++ ||+.+++..... ..|...|.++ .++| +++.|++|+
T Consensus 129 ~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f-~GH~gDV~sl-sl~p~~~ntFvSg~ 206 (343)
T KOG0286|consen 129 RDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVF-HGHTGDVMSL-SLSPSDGNTFVSGG 206 (343)
T ss_pred ccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEe-cCCcccEEEE-ecCCCCCCeEEecc
Confidence 5221 22457999999999999988 888887 999999865222 2456677776 6777 999999999
Q ss_pred cCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCC--CCCeEEEEEc
Q 037288 395 MDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFS--NSVPSAVCWR 472 (513)
Q Consensus 395 ~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~--~~~v~~v~~~ 472 (513)
-|+..+|||+| ...++++|.+|...|.. +.|.|+|.-+++|+.|++.++||++..+.+..+... ..+|++++|+
T Consensus 207 cD~~aklWD~R--~~~c~qtF~ghesDINs--v~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS 282 (343)
T KOG0286|consen 207 CDKSAKLWDVR--SGQCVQTFEGHESDINS--VRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFS 282 (343)
T ss_pred cccceeeeecc--CcceeEeecccccccce--EEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEc
Confidence 99999999999 77799999999999988 899999999999999999999999999988887643 4679999999
Q ss_pred CCCceEEeeCCCee
Q 037288 473 TQRSMGPQIEGKIH 486 (513)
Q Consensus 473 p~~~~~~t~~~~~~ 486 (513)
..+.++..+..|+.
T Consensus 283 ~SGRlLfagy~d~~ 296 (343)
T KOG0286|consen 283 KSGRLLFAGYDDFT 296 (343)
T ss_pred ccccEEEeeecCCc
Confidence 99776666555544
No 8
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.97 E-value=1.5e-28 Score=217.15 Aligned_cols=196 Identities=18% Similarity=0.182 Sum_probs=173.6
Q ss_pred EEeccccCcEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEee-eCCCeEEEEEec-CCcEEEEEeCCCeEEEEECCC
Q 037288 250 HLVASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCR-SKSDILAQQVIH-SGNVVLCGFRNGAIVTVDVRK 327 (513)
Q Consensus 250 ~~~~~h~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~-~~~~l~sg~~dg~i~iwd~~~ 327 (513)
..+.+|++-+.|+.|-.|+.+|.+.+|.+..+||+++++.+..+. |.++|.+++++| +++.+++|+.|+..++||+|.
T Consensus 139 r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~ 218 (343)
T KOG0286|consen 139 RELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS 218 (343)
T ss_pred eeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccC
Confidence 458999999999999998877777788889999999999877766 888999999999 899999999999999999999
Q ss_pred CccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCC
Q 037288 328 RQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLT 407 (513)
Q Consensus 328 ~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~ 407 (513)
+.. .+.|.+|...|.+|.| .|+|.-|++|+.|+++++||+|
T Consensus 219 ~~c---~qtF~ghesDINsv~f----------------------------------fP~G~afatGSDD~tcRlyDlR-- 259 (343)
T KOG0286|consen 219 GQC---VQTFEGHESDINSVRF----------------------------------FPSGDAFATGSDDATCRLYDLR-- 259 (343)
T ss_pred cce---eEeecccccccceEEE----------------------------------ccCCCeeeecCCCceeEEEeec--
Confidence 976 5699999999999554 5699999999999999999999
Q ss_pred CccceEEecCC--CCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCCe
Q 037288 408 TRGAVQSYEGH--VNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKI 485 (513)
Q Consensus 408 ~~~~~~~~~~h--~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~ 485 (513)
....+..|... ..+++. ++||..|++|++|..|.++.+||.-.++.+..+.+|+..|+++..+|++..++|.+-|.
T Consensus 260 aD~~~a~ys~~~~~~gitS--v~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs 337 (343)
T KOG0286|consen 260 ADQELAVYSHDSIICGITS--VAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDS 337 (343)
T ss_pred CCcEEeeeccCcccCCcee--EEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhH
Confidence 66677777632 234444 89999999999999999999999999999999999999999999999999999988774
Q ss_pred e
Q 037288 486 H 486 (513)
Q Consensus 486 ~ 486 (513)
.
T Consensus 338 ~ 338 (343)
T KOG0286|consen 338 T 338 (343)
T ss_pred h
Confidence 3
No 9
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1.6e-29 Score=233.50 Aligned_cols=224 Identities=11% Similarity=0.080 Sum_probs=196.5
Q ss_pred cccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEEee-eCCCeEEEEEecC--CcEEEEEeCCCeEEEEECCCCc
Q 037288 254 SFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWVCR-SKSDILAQQVIHS--GNVVLCGFRNGAIVTVDVRKRQ 329 (513)
Q Consensus 254 ~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~--~~~l~sg~~dg~i~iwd~~~~~ 329 (513)
+-+.+|..+.|+.++..|++|+ +|.++||+..+...+.++. |.+.|.++.|+|. +.-+++|+.||++++|++.+..
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~ 252 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET 252 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence 5567999999999999999997 5569999999887666555 8889999999997 5689999999999999999876
Q ss_pred cccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeE
Q 037288 330 RGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTV 399 (513)
Q Consensus 330 ~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i 399 (513)
. +..+.+|...|..++|+| .+.+++ ||+.++... ...-.|...|.++ +|.++|.++++|+.|..-
T Consensus 253 ~---l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~El-L~QEGHs~~v~~i-af~~DGSL~~tGGlD~~~ 327 (459)
T KOG0272|consen 253 P---LQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSEL-LLQEGHSKGVFSI-AFQPDGSLAATGGLDSLG 327 (459)
T ss_pred c---hhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhh-Hhhccccccccee-EecCCCceeeccCccchh
Confidence 5 669999999999999999 666666 888776533 2233455667775 889999999999999999
Q ss_pred EEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCC-CceE
Q 037288 400 KLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQ-RSMG 478 (513)
Q Consensus 400 ~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~-~~~~ 478 (513)
+|||+| +..++..+.+|..+|.. ++|+|+|..|++||.|++++|||++..+.+.++..|.+.|+.|+|.|. +.++
T Consensus 328 RvWDlR--tgr~im~L~gH~k~I~~--V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL 403 (459)
T KOG0272|consen 328 RVWDLR--TGRCIMFLAGHIKEILS--VAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFL 403 (459)
T ss_pred heeecc--cCcEEEEecccccceee--EeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEE
Confidence 999999 66799999999999866 999999999999999999999999999999999999999999999995 8999
Q ss_pred EeeCCCee
Q 037288 479 PQIEGKIH 486 (513)
Q Consensus 479 ~t~~~~~~ 486 (513)
+|++-|-.
T Consensus 404 ~TasyD~t 411 (459)
T KOG0272|consen 404 VTASYDNT 411 (459)
T ss_pred EEcccCcc
Confidence 99998866
No 10
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.3e-28 Score=211.19 Aligned_cols=231 Identities=18% Similarity=0.239 Sum_probs=203.3
Q ss_pred eEEeccccCcEEEEEEcCCCCEEEEE-eCCeEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECC
Q 037288 249 MHLVASFKCTVWTADFCTNPSQAVIG-TNLGAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVR 326 (513)
Q Consensus 249 ~~~~~~h~~~V~~~~~s~~g~~l~s~-s~~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~ 326 (513)
+.+..+|...|.+++.+.|+..+++| +|..+.+||+++|+..+.++ |.+.|..++|+.+..++++|+.|.++++||.|
T Consensus 52 iktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCR 131 (307)
T KOG0316|consen 52 IKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCR 131 (307)
T ss_pred eeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcc
Confidence 45688999999999999999988877 55669999999999888877 77889999999999999999999999999999
Q ss_pred CCccccccccccccCcCeEEEeeCC-eEEEeE-------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCe
Q 037288 327 KRQRGCSSRAGRRHRIPYSRLQRND-RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGT 398 (513)
Q Consensus 327 ~~~~~~~~~~~~~h~~~v~~v~~~~-~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~ 398 (513)
+....+ ++.+....+.|.+|+.+. .|++|+ |+++.+.+. .-....+|+|+ .++++++..++++.|++
T Consensus 132 S~s~eP-iQildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~---sDy~g~pit~v-s~s~d~nc~La~~l~st 206 (307)
T KOG0316|consen 132 SRSFEP-IQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLS---SDYFGHPITSV-SFSKDGNCSLASSLDST 206 (307)
T ss_pred cCCCCc-cchhhhhcCceeEEEecccEEEeeccCCcEEEEEeecceee---hhhcCCcceeE-EecCCCCEEEEeeccce
Confidence 998887 899999999999999998 888888 888888754 33456678885 89999999999999999
Q ss_pred EEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCC-eEEEEEcCC--C
Q 037288 399 VKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSV-PSAVCWRTQ--R 475 (513)
Q Consensus 399 i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~-v~~v~~~p~--~ 475 (513)
+++.|-. ..+.++.|+||.+.-+.++++++....++++|++||.|++||+.+.+++..+..+..+ +..+.++|. .
T Consensus 207 lrLlDk~--tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~ 284 (307)
T KOG0316|consen 207 LRLLDKE--TGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDD 284 (307)
T ss_pred eeecccc--hhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccc
Confidence 9999975 4458999999999888888999999999999999999999999999999999988887 899999999 4
Q ss_pred ceEEeeCCCee
Q 037288 476 SMGPQIEGKIH 486 (513)
Q Consensus 476 ~~~~t~~~~~~ 486 (513)
.+.|+..+++.
T Consensus 285 f~~A~~~~~~~ 295 (307)
T KOG0316|consen 285 FITATGHGDLF 295 (307)
T ss_pred eeEecCCceec
Confidence 55566666554
No 11
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=2e-28 Score=226.81 Aligned_cols=318 Identities=17% Similarity=0.147 Sum_probs=241.1
Q ss_pred ccccchhhhhhhhhcCCceEEecCCchhhHH-HHHHHhccCCeEEEEcccccccchhheeeeeeeeCCCCceeeeeEEec
Q 037288 51 LTGATTSKLLQARELRGNVFSLSKGKCNFKE-EFQKRLISQPVVWRYEATNQTGDITLEQIELNVQTPEGQFRTDVLLTG 129 (513)
Q Consensus 51 ~~~~~~~~l~~~r~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~tg 129 (513)
+.-.++..|.++|+.||+..+ .+...... .++.+-++++.+ +.+...+.+++..+. . .+.++||
T Consensus 173 ~l~~~aq~ls~~rKkrg~k~p--~~la~~d~~~~~~q~ash~gL---H~t~~pgi~ald~~~---------s-~~~ilTG 237 (506)
T KOG0289|consen 173 KLEDKAQVLSQERKKRGKKLP--EKLATTDELSCLLQVASHTGL---HSTSTPGITALDIIP---------S-SSKILTG 237 (506)
T ss_pred HHHHHHHHHHHHhhhccccCC--cccccHHHHHHHHhcCCCcce---eccCCCCeeEEeecC---------C-CCcceec
Confidence 444456689999999999999 55555554 456677889988 888888888888777 4 6789999
Q ss_pred cccCeEEEEEeecccccccceeEEeeeccccccccccccccCCCCCccccCcceeeecccceEEEecCCCCccccCCCcc
Q 037288 130 SVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNKTESSKAPEHIWRLNKASILMPSSVSCIKLFGKHPSCATDGGSV 209 (513)
Q Consensus 130 ~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~s~i~si~~~~~~~~~~~~~~~~ 209 (513)
|.|..+.+|+. +..++...+..+ ..+ ++.+..+|........+
T Consensus 238 G~d~~av~~d~--~s~q~l~~~~Gh---------~kk-----i~~v~~~~~~~~v~~aS--------------------- 280 (506)
T KOG0289|consen 238 GEDKTAVLFDK--PSNQILATLKGH---------TKK-----ITSVKFHKDLDTVITAS--------------------- 280 (506)
T ss_pred CCCCceEEEec--chhhhhhhccCc---------ceE-----EEEEEeccchhheeecC---------------------
Confidence 99999999997 333333334433 333 55555555422222122
Q ss_pred cceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeCCe-EEEEECCCCc
Q 037288 210 RHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNLG-AAMVDMETGM 288 (513)
Q Consensus 210 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~~-i~vwd~~~~~ 288 (513)
.+-. +++|+....++...+..|..+|+.+..+|+|.||+++++++ ....|++++.
T Consensus 281 ------------ad~~------------i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~ 336 (506)
T KOG0289|consen 281 ------------ADEI------------IRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGS 336 (506)
T ss_pred ------------Ccce------------EEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCc
Confidence 1222 33333333334456888999999999999999999998766 6777999999
Q ss_pred EEEEeeeC-C--CeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcc
Q 037288 289 ASWVCRSK-S--DILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANI 365 (513)
Q Consensus 289 ~~~~~~~~-~--~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~ 365 (513)
++....++ + .+++.+|+|||.+|.+|..||.|+|||+.++.. +..|.+|.++|.+|.|
T Consensus 337 ~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~---~a~Fpght~~vk~i~F---------------- 397 (506)
T KOG0289|consen 337 QLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTN---VAKFPGHTGPVKAISF---------------- 397 (506)
T ss_pred EEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccc---cccCCCCCCceeEEEe----------------
Confidence 88777764 3 389999999999999999999999999999886 5599999999999655
Q ss_pred cceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCC-ceeEEEEEEcCCCCEEEEEeCCCc
Q 037288 366 WPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVN-SHTRIQLGVDQSERFVMSGGEDCK 444 (513)
Q Consensus 366 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~-~v~~~~~~~s~~g~~l~sg~~Dg~ 444 (513)
+.+|.+|++++.|+.|++||+| +...+++|.-... ++. .++|++.|.+|+.+|.|=.
T Consensus 398 ------------------sENGY~Lat~add~~V~lwDLR--Kl~n~kt~~l~~~~~v~--s~~fD~SGt~L~~~g~~l~ 455 (506)
T KOG0289|consen 398 ------------------SENGYWLATAADDGSVKLWDLR--KLKNFKTIQLDEKKEVN--SLSFDQSGTYLGIAGSDLQ 455 (506)
T ss_pred ------------------ccCceEEEEEecCCeEEEEEeh--hhcccceeeccccccce--eEEEcCCCCeEEeecceeE
Confidence 5699999999999999999999 5556666653332 343 4899999999999988855
Q ss_pred EEEEeC--CCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCCe
Q 037288 445 LRIWSI--RSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKI 485 (513)
Q Consensus 445 v~vwd~--~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~ 485 (513)
|++++- .++.++..+..|.+..+++.|.....++++++.|-
T Consensus 456 Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~ 498 (506)
T KOG0289|consen 456 VYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDA 498 (506)
T ss_pred EEEEecccccceeeehhhhcccccceeeecccceEEeeccchh
Confidence 555552 26778888888888999999999999999888773
No 12
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.96 E-value=6.2e-27 Score=221.84 Aligned_cols=331 Identities=12% Similarity=0.116 Sum_probs=233.1
Q ss_pred eeeeeeCCCCceeeeeEEeccccCeEEEEEeecccccccceeEEeeeccccccccccccccCCCCCccccCcceeee---
Q 037288 110 IELNVQTPEGQFRTDVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNKTESSKAPEHIWRLNKASILM--- 186 (513)
Q Consensus 110 ~~~~~~~~~g~~~~~~l~tg~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~--- 186 (513)
..+...+|.|. +++.|...|.||||+.......+.++++-. .+.+..+.|+++...+..
T Consensus 62 vtVAkySPsG~----yiASGD~sG~vRIWdtt~~~hiLKnef~v~--------------aG~I~Di~Wd~ds~RI~avGE 123 (603)
T KOG0318|consen 62 VTVAKYSPSGF----YIASGDVSGKVRIWDTTQKEHILKNEFQVL--------------AGPIKDISWDFDSKRIAAVGE 123 (603)
T ss_pred eEEEEeCCCce----EEeecCCcCcEEEEeccCcceeeeeeeeec--------------ccccccceeCCCCcEEEEEec
Confidence 34566788875 799999999999999855432333333322 233778888877533222
Q ss_pred -----------------------cccceEEEecCCCCccccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCccc
Q 037288 187 -----------------------PSSVSCIKLFGKHPSCATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSI 243 (513)
Q Consensus 187 -----------------------~s~i~si~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 243 (513)
...|.+..+-+.++.... .+..++.+.+|.= |+-.
T Consensus 124 Grerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~--------------T~sdDn~v~ffeG--PPFK------ 181 (603)
T KOG0318|consen 124 GRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIA--------------TGSDDNTVAFFEG--PPFK------ 181 (603)
T ss_pred CccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEE--------------eccCCCeEEEeeC--CCee------
Confidence 111223333332222111 1123333333321 1111
Q ss_pred ccCceeEEeccccCcEEEEEEcCCCCEEEEE-eCCeEEEEECCCCcEEEEee----eCCCeEEEEEecCCcEEEEEeCCC
Q 037288 244 IRRSTMHLVASFKCTVWTADFCTNPSQAVIG-TNLGAAMVDMETGMASWVCR----SKSDILAQQVIHSGNVVLCGFRNG 318 (513)
Q Consensus 244 ~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~-s~~~i~vwd~~~~~~~~~~~----~~~~V~~l~~~~~~~~l~sg~~dg 318 (513)
--.++..|..-|+|+.|+|||.++++. +|+++.+||-.+|+.+..+. |++.|++++|+||+..|++++.|.
T Consensus 182 ----Fk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDk 257 (603)
T KOG0318|consen 182 ----FKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADK 257 (603)
T ss_pred ----eeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCc
Confidence 124577899999999999999999865 67889999999999887776 888999999999999999999999
Q ss_pred eEEEEECCCCcccc----------------------------------------ccccccccCcCeEEEeeCC---eEEE
Q 037288 319 AIVTVDVRKRQRGC----------------------------------------SSRAGRRHRIPYSRLQRND---RVTN 355 (513)
Q Consensus 319 ~i~iwd~~~~~~~~----------------------------------------~~~~~~~h~~~v~~v~~~~---~~~s 355 (513)
+++|||+.+.+... .+..+.+|...|+++..++ .+++
T Consensus 258 t~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~S 337 (603)
T KOG0318|consen 258 TIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYS 337 (603)
T ss_pred eEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEe
Confidence 99999986543311 2456789999999999988 6777
Q ss_pred eE-------eecccCcccce-----------------------------eEe-------------ecCCC----------
Q 037288 356 EQ-------WFELKANIWPS-----------------------------HTT-------------FMPSS---------- 376 (513)
Q Consensus 356 ~~-------w~~~~~~~~~~-----------------------------~~~-------------~~~~~---------- 376 (513)
++ |+...+..... +.+ +...+
T Consensus 338 gsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~ 417 (603)
T KOG0318|consen 338 GSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDG 417 (603)
T ss_pred eccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCC
Confidence 76 65544321100 000 00000
Q ss_pred ---------------------------ceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEE
Q 037288 377 ---------------------------ISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGV 429 (513)
Q Consensus 377 ---------------------------v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~ 429 (513)
....++++|++..+++|+.|+.|++|.+.-...........|.+++++ +++
T Consensus 418 ~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~--vay 495 (603)
T KOG0318|consen 418 GTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITD--VAY 495 (603)
T ss_pred CEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceE--EEE
Confidence 001135789999999999999999999962222244456779999988 899
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCeEEEE-ecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288 430 DQSERFVMSGGEDCKLRIWSIRSGELVFE-DKFSNSVPSAVCWRTQRSMGPQIEGKIH 486 (513)
Q Consensus 430 s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~-~~~~~~~v~~v~~~p~~~~~~t~~~~~~ 486 (513)
|||+.+|++|...+.|.+||+.+.+.... +..|.+.|.+++|+|+..++||.+.|-.
T Consensus 496 Spd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~ 553 (603)
T KOG0318|consen 496 SPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTN 553 (603)
T ss_pred CCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccce
Confidence 99999999999999999999999886333 5678999999999999999999999866
No 13
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.96 E-value=2.3e-27 Score=205.06 Aligned_cols=242 Identities=10% Similarity=0.096 Sum_probs=201.6
Q ss_pred CCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeCCeEEEEECCCCc--EEEEee-eCCCeEEEEEecCCcEEEEE
Q 037288 238 GPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMETGM--ASWVCR-SKSDILAQQVIHSGNVVLCG 314 (513)
Q Consensus 238 ~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~--~~~~~~-~~~~V~~l~~~~~~~~l~sg 314 (513)
++.|......+..+++-....|+.+.+.|+++.||+++...|++||+.++. ++..+. |...|+++.|..+|+.+++|
T Consensus 22 IRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTg 101 (311)
T KOG0315|consen 22 IRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTG 101 (311)
T ss_pred eeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEec
Confidence 555666666677888888889999999999999999999999999999876 455565 67889999999999999999
Q ss_pred eCCCeEEEEECCCCccccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeEeecCCCceEEEEEc
Q 037288 315 FRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQ 384 (513)
Q Consensus 315 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~ 384 (513)
+.||+++|||+|... .+....|..+|.++..+| .+++|. ||+..........-.....+.++ ...
T Consensus 102 seDgt~kIWdlR~~~----~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl-~v~ 176 (311)
T KOG0315|consen 102 SEDGTVKIWDLRSLS----CQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSL-TVM 176 (311)
T ss_pred CCCceEEEEeccCcc----cchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeE-EEc
Confidence 999999999999854 457778889999999999 777775 99987754433222333455564 678
Q ss_pred CCCCEEEEEecCCeEEEEecCCCCc----cceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-eEEEEe
Q 037288 385 LYDQYFLASSMDGTVKLYDHRLTTR----GAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSG-ELVFED 459 (513)
Q Consensus 385 ~~~~~l~s~s~dg~i~lwd~~~~~~----~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~-~~~~~~ 459 (513)
++|.+++.+...|..++|++-.... .++..|+.|.+-+.. +.+|||+++|+++|.|.+++||++.+. +.-..+
T Consensus 177 ~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~--C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l 254 (311)
T KOG0315|consen 177 PDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILR--CLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVL 254 (311)
T ss_pred CCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEE--EEECCCCcEEEeecCCceEEEEecCCceeeEEEe
Confidence 8999999999999999999853221 267788999987644 889999999999999999999999988 666678
Q ss_pred cCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288 460 KFSNSVPSAVCWRTQRSMGPQIEGKIH 486 (513)
Q Consensus 460 ~~~~~~v~~v~~~p~~~~~~t~~~~~~ 486 (513)
.+|...+..++|+.++.+++|.+.|-.
T Consensus 255 ~gh~rWvWdc~FS~dg~YlvTassd~~ 281 (311)
T KOG0315|consen 255 TGHQRWVWDCAFSADGEYLVTASSDHT 281 (311)
T ss_pred ecCCceEEeeeeccCccEEEecCCCCc
Confidence 899999999999999999999998844
No 14
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.96 E-value=3.6e-29 Score=230.19 Aligned_cols=266 Identities=19% Similarity=0.223 Sum_probs=207.8
Q ss_pred eeCCCCceeeeeEEeccccCeEEEEEeecccccccceeEEeeeccccccccccccccCCCCCccccCcceeeecccceEE
Q 037288 114 VQTPEGQFRTDVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNKTESSKAPEHIWRLNKASILMPSSVSCI 193 (513)
Q Consensus 114 ~~~~~g~~~~~~l~tg~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~s~i~si 193 (513)
.=+|+|.. |++|+..|.+.||+. ....++-.++-+ ...+..+.|+++
T Consensus 103 ~WtPeGRR----Lltgs~SGEFtLWNg--~~fnFEtilQaH--------------Ds~Vr~m~ws~~------------- 149 (464)
T KOG0284|consen 103 RWTPEGRR----LLTGSQSGEFTLWNG--TSFNFETILQAH--------------DSPVRTMKWSHN------------- 149 (464)
T ss_pred EEcCCCce----eEeecccccEEEecC--ceeeHHHHhhhh--------------cccceeEEEccC-------------
Confidence 35777764 999999999999997 222222222211 112444455444
Q ss_pred EecCCCCccccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEecccc-CcEEEEEEcCCCCEEE
Q 037288 194 KLFGKHPSCATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFK-CTVWTADFCTNPSQAV 272 (513)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~~~~s~~g~~l~ 272 (513)
... +.+++..|++.+|+..-. .+..+++|. ..|.+++|+|+...++
T Consensus 150 -----g~w---------------miSgD~gG~iKyWqpnmn-------------nVk~~~ahh~eaIRdlafSpnDskF~ 196 (464)
T KOG0284|consen 150 -----GTW---------------MISGDKGGMIKYWQPNMN-------------NVKIIQAHHAEAIRDLAFSPNDSKFL 196 (464)
T ss_pred -----CCE---------------EEEcCCCceEEecccchh-------------hhHHhhHhhhhhhheeccCCCCceeE
Confidence 211 124557888888876622 123355554 8999999999888888
Q ss_pred EEeCCe-EEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeC
Q 037288 273 IGTNLG-AAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRN 350 (513)
Q Consensus 273 s~s~~~-i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~ 350 (513)
+++|++ |+|||....+....+. |.-.|.|++|+|...+|++|+.|..|++||.+++.+.. ++.+|+.-|.++
T Consensus 197 t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~---tlh~HKntVl~~--- 270 (464)
T KOG0284|consen 197 TCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLA---TLHGHKNTVLAV--- 270 (464)
T ss_pred EecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhh---hhhhccceEEEE---
Confidence 887665 9999998887655555 77779999999999999999999999999999999855 888898888884
Q ss_pred CeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEc
Q 037288 351 DRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVD 430 (513)
Q Consensus 351 ~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s 430 (513)
.|++++++|+++|.|..++++|+| .-+.++++++|...++. +.|+
T Consensus 271 -------------------------------~f~~n~N~Llt~skD~~~kv~DiR--~mkEl~~~r~Hkkdv~~--~~Wh 315 (464)
T KOG0284|consen 271 -------------------------------KFNPNGNWLLTGSKDQSCKVFDIR--TMKELFTYRGHKKDVTS--LTWH 315 (464)
T ss_pred -------------------------------EEcCCCCeeEEccCCceEEEEehh--HhHHHHHhhcchhhhee--eccc
Confidence 556689999999999999999998 44578899999999877 8999
Q ss_pred C-CCCEEEEEeCCCcEEEEeCCCCeEEEEe-cCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288 431 Q-SERFVMSGGEDCKLRIWSIRSGELVFED-KFSNSVPSAVCWRTQRSMGPQIEGKIH 486 (513)
Q Consensus 431 ~-~g~~l~sg~~Dg~v~vwd~~~~~~~~~~-~~~~~~v~~v~~~p~~~~~~t~~~~~~ 486 (513)
| ...+|.+||.||.|..|.+...+++..+ ..|+..|++++|+|-+.+|+|.+.|-.
T Consensus 316 P~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t 373 (464)
T KOG0284|consen 316 PLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRT 373 (464)
T ss_pred cccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcc
Confidence 9 5678999999999999999866666664 578899999999999999999887765
No 15
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.96 E-value=1.9e-27 Score=208.94 Aligned_cols=218 Identities=15% Similarity=0.187 Sum_probs=173.9
Q ss_pred CCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEEe-eeCCCe
Q 037288 222 TGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWVC-RSKSDI 299 (513)
Q Consensus 222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~~-~~~~~V 299 (513)
.+-.+.+|.+...+.. -...+..+.||...|..++.+++|++.++++ |+.+++||+.+++....+ .|...|
T Consensus 36 rDk~ii~W~L~~dd~~-------~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dV 108 (315)
T KOG0279|consen 36 RDKTIIVWKLTSDDIK-------YGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDV 108 (315)
T ss_pred cceEEEEEEeccCccc-------cCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCce
Confidence 4555556666543221 1223566999999999999999999999885 666999999998765544 588899
Q ss_pred EEEEEecCCcEEEEEeCCCeEEEEECCCCcccccccccc-ccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCce
Q 037288 300 LAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGR-RHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSIS 378 (513)
Q Consensus 300 ~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~ 378 (513)
++++|++|...|++|++|.+|++|++....... ... ++++.|.++.|+|
T Consensus 109 lsva~s~dn~qivSGSrDkTiklwnt~g~ck~t---~~~~~~~~WVscvrfsP--------------------------- 158 (315)
T KOG0279|consen 109 LSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYT---IHEDSHREWVSCVRFSP--------------------------- 158 (315)
T ss_pred EEEEecCCCceeecCCCcceeeeeeecccEEEE---EecCCCcCcEEEEEEcC---------------------------
Confidence 999999999999999999999999998665321 222 2267777766654
Q ss_pred EEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEE
Q 037288 379 CLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFE 458 (513)
Q Consensus 379 ~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~ 458 (513)
.++..+|++++.|++|++||++ ..+....+.||.+.++. +.+||||..+++|+.||.+.+||+..++.+..
T Consensus 159 -----~~~~p~Ivs~s~DktvKvWnl~--~~~l~~~~~gh~~~v~t--~~vSpDGslcasGgkdg~~~LwdL~~~k~lys 229 (315)
T KOG0279|consen 159 -----NESNPIIVSASWDKTVKVWNLR--NCQLRTTFIGHSGYVNT--VTVSPDGSLCASGGKDGEAMLWDLNEGKNLYS 229 (315)
T ss_pred -----CCCCcEEEEccCCceEEEEccC--CcchhhccccccccEEE--EEECCCCCEEecCCCCceEEEEEccCCceeEe
Confidence 1237789999999999999998 55577889999999887 89999999999999999999999999999988
Q ss_pred ecCCCCCeEEEEEcCC-CceEEeeCCCee
Q 037288 459 DKFSNSVPSAVCWRTQ-RSMGPQIEGKIH 486 (513)
Q Consensus 459 ~~~~~~~v~~v~~~p~-~~~~~t~~~~~~ 486 (513)
+.+ ..+|.+++|+|+ ..+.+..+..++
T Consensus 230 l~a-~~~v~sl~fspnrywL~~at~~sIk 257 (315)
T KOG0279|consen 230 LEA-FDIVNSLCFSPNRYWLCAATATSIK 257 (315)
T ss_pred ccC-CCeEeeEEecCCceeEeeccCCceE
Confidence 764 778999999999 455555555555
No 16
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=6.5e-27 Score=230.25 Aligned_cols=294 Identities=15% Similarity=0.173 Sum_probs=216.8
Q ss_pred eeeeeEEeccccCeEEEEEeecccccccceeEEeeeccccccccccccccCCCCCccccCcceeeecccceEEEecCCCC
Q 037288 121 FRTDVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNKTESSKAPEHIWRLNKASILMPSSVSCIKLFGKHP 200 (513)
Q Consensus 121 ~~~~~l~tg~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~s~i~si~~~~~~~ 200 (513)
...++|++|-.+|.+.+|++ +...+...+... ..+ +..+.|+-.+.-+.+.+
T Consensus 275 ~~t~~lvvgFssG~f~Lyel--P~f~lih~LSis---------~~~-----I~t~~~N~tGDWiA~g~------------ 326 (893)
T KOG0291|consen 275 KGTNLLVVGFSSGEFGLYEL--PDFNLIHSLSIS---------DQK-----ILTVSFNSTGDWIAFGC------------ 326 (893)
T ss_pred CCceEEEEEecCCeeEEEec--CCceEEEEeecc---------cce-----eeEEEecccCCEEEEcC------------
Confidence 66789999999999999998 554444333322 233 44444433322222222
Q ss_pred ccccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeCCe-E
Q 037288 201 SCATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNLG-A 279 (513)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~~-i 279 (513)
...|.+.+| .|+..+.+...++|...+.+++++|||+++|+|++++ |
T Consensus 327 --------------------~klgQLlVw------------eWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKV 374 (893)
T KOG0291|consen 327 --------------------SKLGQLLVW------------EWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKV 374 (893)
T ss_pred --------------------CccceEEEE------------EeeccceeeeccccccceeeEEECCCCcEEEeccCCCcE
Confidence 123455444 4444455666899999999999999999999997665 9
Q ss_pred EEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCcccccccccccc-CcCeEEEeeCC--eEE-
Q 037288 280 AMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRH-RIPYSRLQRND--RVT- 354 (513)
Q Consensus 280 ~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h-~~~v~~v~~~~--~~~- 354 (513)
+|||..++-|..++. |.+.|++++|+..|+.+++.+.||+|+.||+...+. ++++... .....+++..| .++
T Consensus 375 KvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrN---fRTft~P~p~QfscvavD~sGelV~ 451 (893)
T KOG0291|consen 375 KVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRN---FRTFTSPEPIQFSCVAVDPSGELVC 451 (893)
T ss_pred EEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccce---eeeecCCCceeeeEEEEcCCCCEEE
Confidence 999999999887776 999999999999999999999999999999988776 4566654 34567777777 444
Q ss_pred EeE--------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEE
Q 037288 355 NEQ--------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQ 426 (513)
Q Consensus 355 s~~--------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~ 426 (513)
+|. |+..+|++. ...-.|.++|.++ +|+|.+..|++++.|.+|++||+-. ..+.+.++. +...+ +.
T Consensus 452 AG~~d~F~IfvWS~qTGqll-DiLsGHEgPVs~l-~f~~~~~~LaS~SWDkTVRiW~if~-s~~~vEtl~-i~sdv--l~ 525 (893)
T KOG0291|consen 452 AGAQDSFEIFVWSVQTGQLL-DILSGHEGPVSGL-SFSPDGSLLASGSWDKTVRIWDIFS-SSGTVETLE-IRSDV--LA 525 (893)
T ss_pred eeccceEEEEEEEeecCeee-ehhcCCCCcceee-EEccccCeEEeccccceEEEEEeec-cCceeeeEe-eccce--eE
Confidence 443 999999865 2233456666665 8999999999999999999999962 223566666 44444 44
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecC--------------------CCCCeEEEEEcCCCceEEeeCC
Q 037288 427 LGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKF--------------------SNSVPSAVCWRTQRSMGPQIEG 483 (513)
Q Consensus 427 ~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~--------------------~~~~v~~v~~~p~~~~~~t~~~ 483 (513)
++|.|+|+-|+++..||.|.+||...+.++..+.+ ....++.+++++++..+++.+.
T Consensus 526 vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~ 602 (893)
T KOG0291|consen 526 VSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGE 602 (893)
T ss_pred EEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCC
Confidence 99999999999999999999999988776644311 1356899999999655554443
No 17
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.96 E-value=3.9e-28 Score=228.01 Aligned_cols=253 Identities=18% Similarity=0.175 Sum_probs=211.5
Q ss_pred cccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEEeeeC
Q 037288 218 GSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWVCRSK 296 (513)
Q Consensus 218 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~~~~~ 296 (513)
.++..++.+.+|++.+ ...++.++.+|..+|.+++|+++|..+.+++ |..+++||+++|+++..+...
T Consensus 231 LS~gmD~~vklW~vy~-----------~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~ 299 (503)
T KOG0282|consen 231 LSGGMDGLVKLWNVYD-----------DRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLD 299 (503)
T ss_pred EecCCCceEEEEEEec-----------CcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecC
Confidence 3445788898888874 2335788999999999999999999888775 566999999999999999888
Q ss_pred CCeEEEEEecCC-cEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcc
Q 037288 297 SDILAQQVIHSG-NVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANI 365 (513)
Q Consensus 297 ~~V~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~ 365 (513)
..++|+.|+||+ +++++|+.|+.|+.||+|+++. ++.+..|-++|..+.|-+ ++++.+ |+...+..
T Consensus 300 ~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv---vqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ 376 (503)
T KOG0282|consen 300 KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV---VQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVP 376 (503)
T ss_pred CCceeeecCCCCCcEEEEecCCCcEEEEeccchHH---HHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCcc
Confidence 889999999999 8999999999999999999986 569999999999999988 777776 88776654
Q ss_pred cceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCcc-ceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCc
Q 037288 366 WPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRG-AVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCK 444 (513)
Q Consensus 366 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~-~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~ 444 (513)
............-+ +..+|++.+++.-+.|+.|.++.+...-.. .-+.|+||...-+.+.+.|||||++|++|..||.
T Consensus 377 ik~i~~~~~hsmP~-~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~ 455 (503)
T KOG0282|consen 377 IKNIADPEMHTMPC-LTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGK 455 (503)
T ss_pred chhhcchhhccCcc-eecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCcc
Confidence 32222222223333 367899999999999999999987522221 5567899998888889999999999999999999
Q ss_pred EEEEeCCCCeEEEEecCCCCCeEEEEEcCC-CceEEeeCCCe
Q 037288 445 LRIWSIRSGELVFEDKFSNSVPSAVCWRTQ-RSMGPQIEGKI 485 (513)
Q Consensus 445 v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~-~~~~~t~~~~~ 485 (513)
+.+||.++-+++..++.|+.++..+.|+|. ...+||++-+-
T Consensus 456 v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G 497 (503)
T KOG0282|consen 456 VNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDG 497 (503)
T ss_pred EEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCc
Confidence 999999999999999999999999999999 67788887553
No 18
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.95 E-value=1.7e-26 Score=204.91 Aligned_cols=274 Identities=16% Similarity=0.169 Sum_probs=213.0
Q ss_pred eeeeeCCCCceeeeeEEeccccCeEEEEEeecccccccceeEEeeeccccccccccccccCCCCCccccCcceeeecccc
Q 037288 111 ELNVQTPEGQFRTDVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNKTESSKAPEHIWRLNKASILMPSSV 190 (513)
Q Consensus 111 ~~~~~~~~g~~~~~~l~tg~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~s~i 190 (513)
....+.|+|. .+++||.|..|-+|++..+-++ ...+. -+.+.+.++-|.++.
T Consensus 51 ~~~~F~P~gs----~~aSgG~Dr~I~LWnv~gdceN-~~~lk--------------gHsgAVM~l~~~~d~--------- 102 (338)
T KOG0265|consen 51 YTIKFHPDGS----CFASGGSDRAIVLWNVYGDCEN-FWVLK--------------GHSGAVMELHGMRDG--------- 102 (338)
T ss_pred EEEEECCCCC----eEeecCCcceEEEEeccccccc-eeeec--------------cccceeEeeeeccCC---------
Confidence 3445777775 6999999999999998544322 11111 122225555554441
Q ss_pred eEEEecCCCCccccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCE
Q 037288 191 SCIKLFGKHPSCATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQ 270 (513)
Q Consensus 191 ~si~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~ 270 (513)
.+++. ..++..+..|+..+... +...++|.+-|+.++-+.-|..
T Consensus 103 -------------------s~i~S-----~gtDk~v~~wD~~tG~~------------~rk~k~h~~~vNs~~p~rrg~~ 146 (338)
T KOG0265|consen 103 -------------------SHILS-----CGTDKTVRGWDAETGKR------------IRKHKGHTSFVNSLDPSRRGPQ 146 (338)
T ss_pred -------------------CEEEE-----ecCCceEEEEeccccee------------eehhccccceeeecCccccCCe
Confidence 12211 12345555555554443 4558999999999997666665
Q ss_pred E-EEEeCC-eEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEe
Q 037288 271 A-VIGTNL-GAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQ 348 (513)
Q Consensus 271 l-~s~s~~-~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~ 348 (513)
+ .+|+|+ +++|||+++...+.++..+-.++++.|..++..+++|+-|+.|++||++...... .+.+|.++|+.
T Consensus 147 lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~---~lsGh~DtIt~-- 221 (338)
T KOG0265|consen 147 LVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLY---TLSGHADTITG-- 221 (338)
T ss_pred EEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceE---EeecccCceee--
Confidence 4 477765 5999999999998888888899999999999999999999999999999888744 88999999988
Q ss_pred eCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCcc--ceEEecCCC--CceeE
Q 037288 349 RNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRG--AVQSYEGHV--NSHTR 424 (513)
Q Consensus 349 ~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~--~~~~~~~h~--~~v~~ 424 (513)
++.+++|.++++-++|.++++||+|..... ++..+.+|. -....
T Consensus 222 --------------------------------lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknl 269 (338)
T KOG0265|consen 222 --------------------------------LSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNL 269 (338)
T ss_pred --------------------------------EEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhc
Confidence 466789999999999999999999854333 688888764 34455
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCCe
Q 037288 425 IQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKI 485 (513)
Q Consensus 425 ~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~ 485 (513)
+.++|+|+++.+.+|+.|..+++||..+...+..+.+|.+.|+.++|+|...++.+++.|-
T Consensus 270 L~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk 330 (338)
T KOG0265|consen 270 LKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDK 330 (338)
T ss_pred ceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCc
Confidence 7889999999999999999999999999999999999999999999999988888887774
No 19
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.95 E-value=4.3e-28 Score=223.10 Aligned_cols=195 Identities=15% Similarity=0.203 Sum_probs=171.8
Q ss_pred EeccccCcEEEEEEcCCCCEEEEEeCCe-EEEEECCCCcEEEEeeeC-CCeEEEEEecCCcEEEEEeCCCeEEEEECCCC
Q 037288 251 LVASFKCTVWTADFCTNPSQAVIGTNLG-AAMVDMETGMASWVCRSK-SDILAQQVIHSGNVVLCGFRNGAIVTVDVRKR 328 (513)
Q Consensus 251 ~~~~h~~~V~~~~~s~~g~~l~s~s~~~-i~vwd~~~~~~~~~~~~~-~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~ 328 (513)
.+++|..+|.++.|+++|.++++|.+++ |++|+..-........|+ ..|.+++|+|....+++++.||+|+|||.+..
T Consensus 133 ilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ 212 (464)
T KOG0284|consen 133 ILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP 212 (464)
T ss_pred HhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCC
Confidence 3789999999999999999999997766 999998765544444555 77999999999999999999999999999988
Q ss_pred ccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCC
Q 037288 329 QRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTT 408 (513)
Q Consensus 329 ~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~ 408 (513)
+... .+.+|.-.|.+++|+| ...++++|+.|..|++||.| +
T Consensus 213 kee~---vL~GHgwdVksvdWHP----------------------------------~kgLiasgskDnlVKlWDpr--S 253 (464)
T KOG0284|consen 213 KEER---VLRGHGWDVKSVDWHP----------------------------------TKGLIASGSKDNLVKLWDPR--S 253 (464)
T ss_pred chhh---eeccCCCCcceeccCC----------------------------------ccceeEEccCCceeEeecCC--C
Confidence 8744 7899999999977755 67789999999999999998 6
Q ss_pred ccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCC-CceEEeeCCCee
Q 037288 409 RGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQ-RSMGPQIEGKIH 486 (513)
Q Consensus 409 ~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~-~~~~~t~~~~~~ 486 (513)
..++.++.+|.+.|.. +.|+|++++|+++|.|..++++|+++.+.++++++|...|++++|+|- ..+|++.+.|-.
T Consensus 254 g~cl~tlh~HKntVl~--~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgs 330 (464)
T KOG0284|consen 254 GSCLATLHGHKNTVLA--VKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGS 330 (464)
T ss_pred cchhhhhhhccceEEE--EEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCc
Confidence 6699999999998766 999999999999999999999999999999999999999999999998 567777776644
No 20
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.95 E-value=2.1e-25 Score=196.15 Aligned_cols=260 Identities=12% Similarity=0.117 Sum_probs=191.2
Q ss_pred eeeEEeccccCeEEEEEeecccccccceeEEeeeccccccccccccccCCCCCccccCcceeeecccceEEEecCCCCcc
Q 037288 123 TDVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNKTESSKAPEHIWRLNKASILMPSSVSCIKLFGKHPSC 202 (513)
Q Consensus 123 ~~~l~tg~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~s~i~si~~~~~~~~~ 202 (513)
.++++.++.|-.+-+|++......+-..++ .-+-+...+..+.-++++..
T Consensus 28 ~~~l~sasrDk~ii~W~L~~dd~~~G~~~r-----------~~~GHsH~v~dv~~s~dg~~------------------- 77 (315)
T KOG0279|consen 28 SDILVSASRDKTIIVWKLTSDDIKYGVPVR-----------RLTGHSHFVSDVVLSSDGNF------------------- 77 (315)
T ss_pred CceEEEcccceEEEEEEeccCccccCceee-----------eeeccceEecceEEccCCce-------------------
Confidence 578999999999999999666433211111 11112222333333333111
Q ss_pred ccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeC-CeEEE
Q 037288 203 ATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTN-LGAAM 281 (513)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~-~~i~v 281 (513)
..++..++.+.+|++.+.. ..+.+.+|...|.+++|++|.+.+++|+. .+|++
T Consensus 78 --------------alS~swD~~lrlWDl~~g~------------~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTikl 131 (315)
T KOG0279|consen 78 --------------ALSASWDGTLRLWDLATGE------------STRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKL 131 (315)
T ss_pred --------------EEeccccceEEEEEecCCc------------EEEEEEecCCceEEEEecCCCceeecCCCcceeee
Confidence 1134467778788877543 34669999999999999999999999975 56999
Q ss_pred EECCCCcEEEEeee--CCCeEEEEEecC--CcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeE
Q 037288 282 VDMETGMASWVCRS--KSDILAQQVIHS--GNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQ 357 (513)
Q Consensus 282 wd~~~~~~~~~~~~--~~~V~~l~~~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~ 357 (513)
||+..+........ ..-|.|+.|+|+ ..+|++++.|++|++||+++.+... .+.+|.+.++.
T Consensus 132 wnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~---~~~gh~~~v~t----------- 197 (315)
T KOG0279|consen 132 WNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRT---TFIGHSGYVNT----------- 197 (315)
T ss_pred eeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhh---ccccccccEEE-----------
Confidence 99986554444443 556999999998 5799999999999999999987643 88889888888
Q ss_pred eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEE
Q 037288 358 WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVM 437 (513)
Q Consensus 358 w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~ 437 (513)
+.++|||...++|+.||.+.+||++ +.+.+.++. |...|.. ++|+|+.-+|+
T Consensus 198 -----------------------~~vSpDGslcasGgkdg~~~LwdL~--~~k~lysl~-a~~~v~s--l~fspnrywL~ 249 (315)
T KOG0279|consen 198 -----------------------VTVSPDGSLCASGGKDGEAMLWDLN--EGKNLYSLE-AFDIVNS--LCFSPNRYWLC 249 (315)
T ss_pred -----------------------EEECCCCCEEecCCCCceEEEEEcc--CCceeEecc-CCCeEee--EEecCCceeEe
Confidence 4667899999999999999999998 666777776 6666666 89999987776
Q ss_pred EEeCCCcEEEEeCCCCeEEEEecCC---------CCCeEEEEEcCCCceEEee
Q 037288 438 SGGEDCKLRIWSIRSGELVFEDKFS---------NSVPSAVCWRTQRSMGPQI 481 (513)
Q Consensus 438 sg~~Dg~v~vwd~~~~~~~~~~~~~---------~~~v~~v~~~p~~~~~~t~ 481 (513)
.+. +-.|+|||+.++.++.+++.. .....+++|++++..|.+.
T Consensus 250 ~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g 301 (315)
T KOG0279|consen 250 AAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAG 301 (315)
T ss_pred ecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEee
Confidence 655 556999999999988875422 2235678999996544433
No 21
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.95 E-value=4.7e-26 Score=213.27 Aligned_cols=267 Identities=15% Similarity=0.152 Sum_probs=205.1
Q ss_pred eeeEEeccccCeEEEEEeecccccccceeEEeeeccccccccccccccCCCCCccccCcceeeecccceEEEecCCCCcc
Q 037288 123 TDVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNKTESSKAPEHIWRLNKASILMPSSVSCIKLFGKHPSC 202 (513)
Q Consensus 123 ~~~l~tg~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~s~i~si~~~~~~~~~ 202 (513)
.+.|+||+.||.++||+..... ...+.+ +..+|.+++.+++....
T Consensus 247 G~~LatG~~~G~~riw~~~G~l---~~tl~~--------------------------------HkgPI~slKWnk~G~yi 291 (524)
T KOG0273|consen 247 GTLLATGSEDGEARIWNKDGNL---ISTLGQ--------------------------------HKGPIFSLKWNKKGTYI 291 (524)
T ss_pred CCeEEEeecCcEEEEEecCchh---hhhhhc--------------------------------cCCceEEEEEcCCCCEE
Confidence 5789999999999999984433 122222 22344444444444222
Q ss_pred ccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeCCeEEEE
Q 037288 203 ATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNLGAAMV 282 (513)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~~i~vw 282 (513)
.++..+|.+.+|+..+... .+.+.-|..+..++.|-.+..+..++.|+.|+|+
T Consensus 292 ---------------lS~~vD~ttilwd~~~g~~------------~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~ 344 (524)
T KOG0273|consen 292 ---------------LSGGVDGTTILWDAHTGTV------------KQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVC 344 (524)
T ss_pred ---------------EeccCCccEEEEeccCceE------------EEeeeeccCCccceEEecCceEeecCCCceEEEE
Confidence 1334567777777653322 3446667777788999877777777788889999
Q ss_pred ECCCCcEEEEe-eeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecc
Q 037288 283 DMETGMASWVC-RSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFEL 361 (513)
Q Consensus 283 d~~~~~~~~~~-~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~ 361 (513)
.+....++.++ .|+++|.++.|+|.|.+|++++.|++++||....... ...+.+|...|..+.|+|
T Consensus 345 kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~---~~~l~~Hskei~t~~wsp---------- 411 (524)
T KOG0273|consen 345 KVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNS---VHDLQAHSKEIYTIKWSP---------- 411 (524)
T ss_pred EecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcc---hhhhhhhccceeeEeecC----------
Confidence 98877665554 4889999999999999999999999999999877765 448999999999999877
Q ss_pred cCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeC
Q 037288 362 KANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGE 441 (513)
Q Consensus 362 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~ 441 (513)
.+++ ...+..+..+++++.|++|++||+. ...++.+|..|..+|+. ++|+|+|++|++|+.
T Consensus 412 ------------~g~v---~~n~~~~~~l~sas~dstV~lwdv~--~gv~i~~f~kH~~pVys--vafS~~g~ylAsGs~ 472 (524)
T KOG0273|consen 412 ------------TGPV---TSNPNMNLMLASASFDSTVKLWDVE--SGVPIHTLMKHQEPVYS--VAFSPNGRYLASGSL 472 (524)
T ss_pred ------------CCCc---cCCCcCCceEEEeecCCeEEEEEcc--CCceeEeeccCCCceEE--EEecCCCcEEEecCC
Confidence 1111 1233457789999999999999996 55599999999999977 999999999999999
Q ss_pred CCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCC
Q 037288 442 DCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGK 484 (513)
Q Consensus 442 Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~ 484 (513)
||.|.+|+++++++++.+.. .+.|..++|+.++..+..+..|
T Consensus 473 dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd 514 (524)
T KOG0273|consen 473 DGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAGDKLGACASD 514 (524)
T ss_pred CCeeEeccccchheeEeecC-CCeEEEEEEcCCCCEEEEEecC
Confidence 99999999999999999887 4459999999997666555444
No 22
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.95 E-value=6.3e-26 Score=212.44 Aligned_cols=222 Identities=14% Similarity=0.148 Sum_probs=185.0
Q ss_pred CcEEEEEEcCCCCEEEEEeCCe-EEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccc
Q 037288 257 CTVWTADFCTNPSQAVIGTNLG-AAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSR 335 (513)
Q Consensus 257 ~~V~~~~~s~~g~~l~s~s~~~-i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~ 335 (513)
..|++++|+.+|.+||+|+.++ +++|+...+....+-.|+++|+++.|+.+|++|++++.|+++.+||..++.. .+
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~---~q 312 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTV---KQ 312 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceE---EE
Confidence 5899999999999999997665 9999998665555556999999999999999999999999999999988875 34
Q ss_pred cccccCcCeEEEeeCC--eEEEeEee-----cccCcccceeEee-cCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCC
Q 037288 336 AGRRHRIPYSRLQRND--RVTNEQWF-----ELKANIWPSHTTF-MPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLT 407 (513)
Q Consensus 336 ~~~~h~~~v~~v~~~~--~~~s~~w~-----~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~ 407 (513)
.+.-|..+-..|+|-. .+++++-+ ..-+.-.|..++. |+..|.++ .|.|.+.+|++++.|++++||...
T Consensus 313 ~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~al-k~n~tg~LLaS~SdD~TlkiWs~~-- 389 (524)
T KOG0273|consen 313 QFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNAL-KWNPTGSLLASCSDDGTLKIWSMG-- 389 (524)
T ss_pred eeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEE-EECCCCceEEEecCCCeeEeeecC--
Confidence 7778888877788865 55555411 1222223445554 45566665 788899999999999999999986
Q ss_pred CccceEEecCCCCceeEEEEEEcCCC---------CEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceE
Q 037288 408 TRGAVQSYEGHVNSHTRIQLGVDQSE---------RFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMG 478 (513)
Q Consensus 408 ~~~~~~~~~~h~~~v~~~~~~~s~~g---------~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~ 478 (513)
+..+...+.+|...++. +.|+|+| ..|++++.|++|++||+..+.+++++..|..+|.+++|+|++.++
T Consensus 390 ~~~~~~~l~~Hskei~t--~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~yl 467 (524)
T KOG0273|consen 390 QSNSVHDLQAHSKEIYT--IKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYL 467 (524)
T ss_pred CCcchhhhhhhccceee--EeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEE
Confidence 56689999999998877 7888864 468999999999999999999999999999999999999999999
Q ss_pred EeeCCCee
Q 037288 479 PQIEGKIH 486 (513)
Q Consensus 479 ~t~~~~~~ 486 (513)
|+.+.|-.
T Consensus 468 AsGs~dg~ 475 (524)
T KOG0273|consen 468 ASGSLDGC 475 (524)
T ss_pred EecCCCCe
Confidence 99998866
No 23
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.95 E-value=1.1e-26 Score=230.73 Aligned_cols=281 Identities=17% Similarity=0.227 Sum_probs=199.5
Q ss_pred hccCCeEEEEcccccccchhheeeeeeeeCCCCceeeeeEEeccccCeEEEEEeecccccccceeEEeeecccccccccc
Q 037288 87 LISQPVVWRYEATNQTGDITLEQIELNVQTPEGQFRTDVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNK 166 (513)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~tg~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (513)
..+.|.++-|.-.......++..+. .+..+|+.|..|..|++|.+......-....... .+..
T Consensus 363 ~~~lpSic~YT~~nt~~~v~ca~fS---------ddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l--------~~~d 425 (707)
T KOG0263|consen 363 RNSLPSICMYTFHNTYQGVTCAEFS---------DDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDL--------SNID 425 (707)
T ss_pred CCCCCcEEEEEEEEcCCcceeEeec---------CCcchhhccccccEEEEEecchhhhccccchhhh--------cccc
Confidence 3555666666544433333444444 5566999999999999999964221100000000 0111
Q ss_pred ccccCCCCCccccCcc-----eeeecccceEEEecCCCCccccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCc
Q 037288 167 TESSKAPEHIWRLNKA-----SILMPSSVSCIKLFGKHPSCATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNF 241 (513)
Q Consensus 167 ~~~~~~~~~~w~p~~~-----~~~~~s~i~si~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 241 (513)
.++..+....-+++.. ..-+..+|-+.++++.. +.++-| ..++.+.+|++.
T Consensus 426 ~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~----------rfLlSc-----SED~svRLWsl~--------- 481 (707)
T KOG0263|consen 426 TESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPDR----------RFLLSC-----SEDSSVRLWSLD--------- 481 (707)
T ss_pred ccccchhhhhccccCCceeEEeecCCCceeeeeecccc----------cceeec-----cCCcceeeeecc---------
Confidence 1111111111111100 11223334444444433 444322 245566556555
Q ss_pred ccccCceeEEeccccCcEEEEEEcCCCCEEEEEeCC-eEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCe
Q 037288 242 SIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNL-GAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGA 319 (513)
Q Consensus 242 ~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~-~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~ 319 (513)
...++....||..+||++.|+|.|-++|+++++ +.++|......+.+++. |-++|.|++|+|+.+++++|+.|.+
T Consensus 482 ---t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~t 558 (707)
T KOG0263|consen 482 ---TWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRT 558 (707)
T ss_pred ---cceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCce
Confidence 344567789999999999999999999999765 48999999888877776 8889999999999999999999999
Q ss_pred EEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeE
Q 037288 320 IVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTV 399 (513)
Q Consensus 320 i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i 399 (513)
|++||+.++.. ++.+.||.++|.++ .++|+|.+|++|+.||.|
T Consensus 559 VRlWDv~~G~~---VRiF~GH~~~V~al----------------------------------~~Sp~Gr~LaSg~ed~~I 601 (707)
T KOG0263|consen 559 VRLWDVSTGNS---VRIFTGHKGPVTAL----------------------------------AFSPCGRYLASGDEDGLI 601 (707)
T ss_pred EEEEEcCCCcE---EEEecCCCCceEEE----------------------------------EEcCCCceEeecccCCcE
Confidence 99999999976 66899999999995 456799999999999999
Q ss_pred EEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 037288 400 KLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRS 452 (513)
Q Consensus 400 ~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~ 452 (513)
++||+. ....+..+.+|.+.+.. +.|+.+|..|++||.|++|++||+..
T Consensus 602 ~iWDl~--~~~~v~~l~~Ht~ti~S--lsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 602 KIWDLA--NGSLVKQLKGHTGTIYS--LSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred EEEEcC--CCcchhhhhcccCceeE--EEEecCCCEEEecCCCCeEEEEEchh
Confidence 999997 55589999999888877 88999999999999999999999864
No 24
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.4e-26 Score=207.88 Aligned_cols=212 Identities=13% Similarity=0.108 Sum_probs=181.8
Q ss_pred eeEEeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEEC
Q 037288 248 TMHLVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDV 325 (513)
Q Consensus 248 ~~~~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~ 325 (513)
++..+.+|...|.++.|-|.|.++++++ |.+|+.|++.+|-++.++. |...|..++.+.||.++++++.|.++++|-+
T Consensus 185 c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~ 264 (406)
T KOG0295|consen 185 CIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVV 264 (406)
T ss_pred HHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEe
Confidence 5667889999999999999999999886 5569999999999999887 5566999999999999999999999999999
Q ss_pred CCCccccccccccccCcCeEEEeeCC-eEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEec
Q 037288 326 RKRQRGCSSRAGRRHRIPYSRLQRND-RVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDH 404 (513)
Q Consensus 326 ~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~ 404 (513)
.+++... .+.+|..+|.+++|.| ..++. +....--...++++.+++.|++|++||+
T Consensus 265 ~t~~~k~---~lR~hEh~vEci~wap~~~~~~--------------------i~~at~~~~~~~~l~s~SrDktIk~wdv 321 (406)
T KOG0295|consen 265 ATKQCKA---ELREHEHPVECIAWAPESSYPS--------------------ISEATGSTNGGQVLGSGSRDKTIKIWDV 321 (406)
T ss_pred ccchhhh---hhhccccceEEEEecccccCcc--------------------hhhccCCCCCccEEEeecccceEEEEec
Confidence 9887644 8999999999999977 10000 0000000114679999999999999999
Q ss_pred CCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCC
Q 037288 405 RLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGK 484 (513)
Q Consensus 405 ~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~ 484 (513)
. ...++.++.+|.+.|.. ++|+|.|+||+++..|+++++||++++++..++..|..-|+++.|+.+..+++|++-|
T Consensus 322 ~--tg~cL~tL~ghdnwVr~--~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVd 397 (406)
T KOG0295|consen 322 S--TGMCLFTLVGHDNWVRG--VAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVD 397 (406)
T ss_pred c--CCeEEEEEecccceeee--eEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEecccc
Confidence 6 44599999999999987 9999999999999999999999999999999999999999999999998899988877
Q ss_pred ee
Q 037288 485 IH 486 (513)
Q Consensus 485 ~~ 486 (513)
..
T Consensus 398 qt 399 (406)
T KOG0295|consen 398 QT 399 (406)
T ss_pred ce
Confidence 44
No 25
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=4.4e-26 Score=219.97 Aligned_cols=196 Identities=12% Similarity=0.126 Sum_probs=168.0
Q ss_pred EEeccccCcEEEEEEcCCCCEEEEEeCCe-EEEEECCCC-cEEEEee-eCCCeEEEEEec-CCcEEEEEeCCCeEEEEEC
Q 037288 250 HLVASFKCTVWTADFCTNPSQAVIGTNLG-AAMVDMETG-MASWVCR-SKSDILAQQVIH-SGNVVLCGFRNGAIVTVDV 325 (513)
Q Consensus 250 ~~~~~h~~~V~~~~~s~~g~~l~s~s~~~-i~vwd~~~~-~~~~~~~-~~~~V~~l~~~~-~~~~l~sg~~dg~i~iwd~ 325 (513)
..+.+|.+-|.|++.||...++.+++|+- |++||-+.+ .+..++. |..-|++++|+| |.+.+++++.|++|++|.+
T Consensus 91 ~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWsl 170 (794)
T KOG0276|consen 91 KTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSL 170 (794)
T ss_pred EEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEc
Confidence 44788999999999999999999998876 999998865 3555555 777799999999 5589999999999999999
Q ss_pred CCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecC
Q 037288 326 RKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHR 405 (513)
Q Consensus 326 ~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~ 405 (513)
.+..+.. ++.+|...|.+++|-+ -.+..+|++|+.|..|++||..
T Consensus 171 gs~~~nf---Tl~gHekGVN~Vdyy~--------------------------------~gdkpylIsgaDD~tiKvWDyQ 215 (794)
T KOG0276|consen 171 GSPHPNF---TLEGHEKGVNCVDYYT--------------------------------GGDKPYLISGADDLTIKVWDYQ 215 (794)
T ss_pred CCCCCce---eeeccccCcceEEecc--------------------------------CCCcceEEecCCCceEEEeecc
Confidence 8887754 8999999999988732 2356799999999999999996
Q ss_pred CCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCC-CceEEeeCCC
Q 037288 406 LTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQ-RSMGPQIEGK 484 (513)
Q Consensus 406 ~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~-~~~~~t~~~~ 484 (513)
...|+++++||.+.|.. +.|+|.-.++++|++||+|+||+..+-++..++......+.+++-.+. +.+++..+.+
T Consensus 216 --tk~CV~TLeGHt~Nvs~--v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg 291 (794)
T KOG0276|consen 216 --TKSCVQTLEGHTNNVSF--VFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEG 291 (794)
T ss_pred --hHHHHHHhhcccccceE--EEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCC
Confidence 55599999999999988 899999999999999999999999999998888888889999998887 4544444443
No 26
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.95 E-value=2.7e-26 Score=207.95 Aligned_cols=197 Identities=15% Similarity=0.210 Sum_probs=178.1
Q ss_pred EEeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCC
Q 037288 250 HLVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRK 327 (513)
Q Consensus 250 ~~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~ 327 (513)
..+.+|.+.|.|+++.|...++++|+ |++|+|||+.+|+...++. |...|..+++++-..++++++.|+.|+.||+..
T Consensus 145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~ 224 (460)
T KOG0285|consen 145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEY 224 (460)
T ss_pred hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechh
Confidence 45889999999999999999999996 5569999999999877776 888899999999999999999999999999998
Q ss_pred CccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCC
Q 037288 328 RQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLT 407 (513)
Q Consensus 328 ~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~ 407 (513)
.+. ++.+.+|-..|.+++. .|.-..|++|+.|..+++||+|
T Consensus 225 nkv---IR~YhGHlS~V~~L~l----------------------------------hPTldvl~t~grDst~RvWDiR-- 265 (460)
T KOG0285|consen 225 NKV---IRHYHGHLSGVYCLDL----------------------------------HPTLDVLVTGGRDSTIRVWDIR-- 265 (460)
T ss_pred hhh---HHHhccccceeEEEec----------------------------------cccceeEEecCCcceEEEeeec--
Confidence 876 5589999998888554 4567789999999999999999
Q ss_pred CccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCCeee
Q 037288 408 TRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIHE 487 (513)
Q Consensus 408 ~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~~ 487 (513)
....+..+.||.+.|.. +.+.|-+..+++|+.|++|++||++.|+...++.+|.-.|.+++.+|...+||+++.|..+
T Consensus 266 tr~~V~~l~GH~~~V~~--V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik 343 (460)
T KOG0285|consen 266 TRASVHVLSGHTNPVAS--VMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIK 343 (460)
T ss_pred ccceEEEecCCCCccee--EEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccce
Confidence 67799999999999977 7777878889999999999999999999999999999999999999999999999988773
No 27
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.94 E-value=4.2e-25 Score=224.38 Aligned_cols=274 Identities=16% Similarity=0.245 Sum_probs=211.0
Q ss_pred eeeCCCCceeeeeEEeccccCeEEEEEeecccccccceeEEeeeccccccccccccccCCCCCccccCcceeeecccceE
Q 037288 113 NVQTPEGQFRTDVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNKTESSKAPEHIWRLNKASILMPSSVSC 192 (513)
Q Consensus 113 ~~~~~~g~~~~~~l~tg~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~s~i~s 192 (513)
..++++|. .+++++.++.+++|........... +-..+...+..++|+|++..+..
T Consensus 165 ~~fs~~g~----~l~~~~~~~~i~~~~~~~~~~~~~~--------------~l~~h~~~v~~~~fs~d~~~l~s------ 220 (456)
T KOG0266|consen 165 VDFSPDGR----ALAAASSDGLIRIWKLEGIKSNLLR--------------ELSGHTRGVSDVAFSPDGSYLLS------ 220 (456)
T ss_pred EEEcCCCC----eEEEccCCCcEEEeecccccchhhc--------------cccccccceeeeEECCCCcEEEE------
Confidence 34677775 4999999999999998332210111 11223334778888887332221
Q ss_pred EEecCCCCccccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEE
Q 037288 193 IKLFGKHPSCATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAV 272 (513)
Q Consensus 193 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~ 272 (513)
+..++.+.+|++. .....+.++.+|...|++++|+|+|++++
T Consensus 221 ---------------------------~s~D~tiriwd~~-----------~~~~~~~~l~gH~~~v~~~~f~p~g~~i~ 262 (456)
T KOG0266|consen 221 ---------------------------GSDDKTLRIWDLK-----------DDGRNLKTLKGHSTYVTSVAFSPDGNLLV 262 (456)
T ss_pred ---------------------------ecCCceEEEeecc-----------CCCeEEEEecCCCCceEEEEecCCCCEEE
Confidence 2245556566552 22235788999999999999999999999
Q ss_pred EEeCC-eEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcC--eEEEe
Q 037288 273 IGTNL-GAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIP--YSRLQ 348 (513)
Q Consensus 273 s~s~~-~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~--v~~v~ 348 (513)
+|+++ +|+|||+.++++...+. |...|.+++|++++++|++++.|+.|++||+.++.... +..+.++..+ ++.
T Consensus 263 Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~-- 339 (456)
T KOG0266|consen 263 SGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLC-LKLLSGAENSAPVTS-- 339 (456)
T ss_pred EecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceee-eecccCCCCCCceeE--
Confidence 98655 59999999999888887 77789999999999999999999999999999987321 2244444333 443
Q ss_pred eCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeE-EEE
Q 037288 349 RNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTR-IQL 427 (513)
Q Consensus 349 ~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~-~~~ 427 (513)
+.|+|++.+|++++.|+.+++||++ ....+..+.+|...+.+ .+.
T Consensus 340 --------------------------------~~fsp~~~~ll~~~~d~~~~~w~l~--~~~~~~~~~~~~~~~~~~~~~ 385 (456)
T KOG0266|consen 340 --------------------------------VQFSPNGKYLLSASLDRTLKLWDLR--SGKSVGTYTGHSNLVRCIFSP 385 (456)
T ss_pred --------------------------------EEECCCCcEEEEecCCCeEEEEEcc--CCcceeeecccCCcceeEecc
Confidence 5678899999999999999999997 55688999999887433 234
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCC-CCCeEEEEEcCCCceEEeeCCCe
Q 037288 428 GVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFS-NSVPSAVCWRTQRSMGPQIEGKI 485 (513)
Q Consensus 428 ~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~-~~~v~~v~~~p~~~~~~t~~~~~ 485 (513)
..++.+.++++|+.|+.|++||+.++..+..+..| ...+..+.|+|...++++.+...
T Consensus 386 ~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~ 444 (456)
T KOG0266|consen 386 TLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEG 444 (456)
T ss_pred cccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCC
Confidence 55788999999999999999999999999999999 88899999999988888887443
No 28
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.2e-24 Score=190.57 Aligned_cols=199 Identities=11% Similarity=0.077 Sum_probs=171.9
Q ss_pred eEEeccccCcEEEEEEcCC-CCEEEEEeCC-eEEEEECCCCc---EEEEee--eCCCeEEEEEecCCcEEEEEeCCCeEE
Q 037288 249 MHLVASFKCTVWTADFCTN-PSQAVIGTNL-GAAMVDMETGM---ASWVCR--SKSDILAQQVIHSGNVVLCGFRNGAIV 321 (513)
Q Consensus 249 ~~~~~~h~~~V~~~~~s~~-g~~l~s~s~~-~i~vwd~~~~~---~~~~~~--~~~~V~~l~~~~~~~~l~sg~~dg~i~ 321 (513)
++.+.+|.+.|+.++|+|- |..||+|+.+ .|++|+...+. +...+. |+..|.+++|+|.|++|++|+.|.++.
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~ 86 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVV 86 (312)
T ss_pred EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEE
Confidence 5678999999999999997 8999988655 59999998543 333333 888899999999999999999999999
Q ss_pred EEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEE
Q 037288 322 TVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKL 401 (513)
Q Consensus 322 iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~l 401 (513)
||.-..+.... +.++.||...|.+++ |+++|++||+++.|..|-|
T Consensus 87 Iw~k~~~efec-v~~lEGHEnEVK~Va----------------------------------ws~sG~~LATCSRDKSVWi 131 (312)
T KOG0645|consen 87 IWKKEDGEFEC-VATLEGHENEVKCVA----------------------------------WSASGNYLATCSRDKSVWI 131 (312)
T ss_pred EeecCCCceeE-EeeeeccccceeEEE----------------------------------EcCCCCEEEEeeCCCeEEE
Confidence 99888776666 778999999999954 4569999999999999999
Q ss_pred EecCCCCcc---ceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCC---CCeEEEEecCCCCCeEEEEEcCCC
Q 037288 402 YDHRLTTRG---AVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIR---SGELVFEDKFSNSVPSAVCWRTQR 475 (513)
Q Consensus 402 wd~~~~~~~---~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~---~~~~~~~~~~~~~~v~~v~~~p~~ 475 (513)
|.+. ... ++..++.|...|.. +.|+|...+|+++|+|.+|++|.-. ..++++++..|...|.+++|+|.+
T Consensus 132 We~d--eddEfec~aVL~~HtqDVK~--V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G 207 (312)
T KOG0645|consen 132 WEID--EDDEFECIAVLQEHTQDVKH--VIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIG 207 (312)
T ss_pred EEec--CCCcEEEEeeeccccccccE--EEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCC
Confidence 9986 322 88899999999988 9999999999999999999999876 457899999999999999999998
Q ss_pred ceEEeeCCCee
Q 037288 476 SMGPQIEGKIH 486 (513)
Q Consensus 476 ~~~~t~~~~~~ 486 (513)
.-+++++.|..
T Consensus 208 ~rl~s~sdD~t 218 (312)
T KOG0645|consen 208 SRLVSCSDDGT 218 (312)
T ss_pred ceEEEecCCcc
Confidence 77777777655
No 29
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=6.8e-25 Score=215.89 Aligned_cols=231 Identities=14% Similarity=0.124 Sum_probs=190.2
Q ss_pred EEeccccCcEEEEEEcCCCCEEEEEeC-CeEEEEECCCCcEE----E-EeeeCCCeEEEEEecCC-cEEEEEeCCCeEEE
Q 037288 250 HLVASFKCTVWTADFCTNPSQAVIGTN-LGAAMVDMETGMAS----W-VCRSKSDILAQQVIHSG-NVVLCGFRNGAIVT 322 (513)
Q Consensus 250 ~~~~~h~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~~~~----~-~~~~~~~V~~l~~~~~~-~~l~sg~~dg~i~i 322 (513)
+.+.||++.|.+++...+|.+|++|+. .++++|.++.+... . ...|.+.|.+++++..+ .+|++++.|+++++
T Consensus 359 ~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~ 438 (775)
T KOG0319|consen 359 QIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKL 438 (775)
T ss_pred EEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEE
Confidence 368999999999997778889999975 45999988554322 1 22388899999998766 79999999999999
Q ss_pred EECCCCcccc--ccc----cccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeEeecCCCceEEEEEcCC
Q 037288 323 VDVRKRQRGC--SSR----AGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQLY 386 (513)
Q Consensus 323 wd~~~~~~~~--~~~----~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 386 (513)
|++...+... ... +...|...|.+++.+| .+.+|+ |++... ....++..+....-.+.|++.
T Consensus 439 W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~--~l~~vLsGH~RGvw~V~Fs~~ 516 (775)
T KOG0319|consen 439 WDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL--RLLGVLSGHTRGVWCVSFSKN 516 (775)
T ss_pred ecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCc--eEEEEeeCCccceEEEEeccc
Confidence 9998732211 011 3457999999999999 677777 888733 334555544444444589999
Q ss_pred CCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCe
Q 037288 387 DQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVP 466 (513)
Q Consensus 387 ~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v 466 (513)
.+.++|+|.|++|+||.+. +..++++|.||...|. ++.|-.+|+.|+|++.||-|++|++++++++.++..|...|
T Consensus 517 dq~laT~SgD~TvKIW~is--~fSClkT~eGH~~aVl--ra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~Drv 592 (775)
T KOG0319|consen 517 DQLLATCSGDKTVKIWSIS--TFSCLKTFEGHTSAVL--RASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRV 592 (775)
T ss_pred cceeEeccCCceEEEEEec--cceeeeeecCccceeE--eeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhcccee
Confidence 9999999999999999997 5669999999999874 48898999999999999999999999999999999999999
Q ss_pred EEEEEcCCCceEEeeCCCee
Q 037288 467 SAVCWRTQRSMGPQIEGKIH 486 (513)
Q Consensus 467 ~~v~~~p~~~~~~t~~~~~~ 486 (513)
++++-+|...+++|.++|-.
T Consensus 593 WaL~~~~~~~~~~tgg~Dg~ 612 (775)
T KOG0319|consen 593 WALSVSPLLDMFVTGGGDGR 612 (775)
T ss_pred EEEeecCccceeEecCCCeE
Confidence 99999999889999998866
No 30
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=5.6e-24 Score=209.73 Aligned_cols=225 Identities=15% Similarity=0.155 Sum_probs=181.9
Q ss_pred eeEEeccccCcEEEEEEcCCCCEEEEEeCC--eEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEE
Q 037288 248 TMHLVASFKCTVWTADFCTNPSQAVIGTNL--GAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVD 324 (513)
Q Consensus 248 ~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~--~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd 324 (513)
.++.+.--..+|..++|+..|.+||.|+.+ ++.||+..+...+...+ |-..+.+++++|||+++++|+.||+|+|||
T Consensus 299 lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn 378 (893)
T KOG0291|consen 299 LIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWN 378 (893)
T ss_pred EEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEe
Confidence 456666667899999999999999999765 69999998887655554 777899999999999999999999999999
Q ss_pred CCCCccccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeEeecCC--CceEEEEEcCCCCEEEE
Q 037288 325 VRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTFMPS--SISCLQSLQLYDQYFLA 392 (513)
Q Consensus 325 ~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~s 392 (513)
...+-+ +.++..|+..|+.+.|+. .+++.+ ||+...... +++..+. +..| ++..|.|..+++
T Consensus 379 ~~SgfC---~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNf--RTft~P~p~Qfsc-vavD~sGelV~A 452 (893)
T KOG0291|consen 379 TQSGFC---FVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNF--RTFTSPEPIQFSC-VAVDPSGELVCA 452 (893)
T ss_pred ccCceE---EEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccccee--eeecCCCceeeeE-EEEcCCCCEEEe
Confidence 998877 459999999999999987 566655 998776643 4444444 4445 477888999999
Q ss_pred EecCC-eEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-EEEEecCCCCCeEEEE
Q 037288 393 SSMDG-TVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGE-LVFEDKFSNSVPSAVC 470 (513)
Q Consensus 393 ~s~dg-~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~-~~~~~~~~~~~v~~v~ 470 (513)
|+.|. .|.+|++. ..+.+-.+.||.++|.+ ++|+|++..|++|+.|.+|++||+-... .+.++. +.+.+.+++
T Consensus 453 G~~d~F~IfvWS~q--TGqllDiLsGHEgPVs~--l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vs 527 (893)
T KOG0291|consen 453 GAQDSFEIFVWSVQ--TGQLLDILSGHEGPVSG--LSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVS 527 (893)
T ss_pred eccceEEEEEEEee--cCeeeehhcCCCCccee--eEEccccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEE
Confidence 99875 59999996 44488889999999987 8899999999999999999999997653 334443 456699999
Q ss_pred EcCCCceEEeeCC
Q 037288 471 WRTQRSMGPQIEG 483 (513)
Q Consensus 471 ~~p~~~~~~t~~~ 483 (513)
|.|++.-+|.+..
T Consensus 528 frPdG~elaVaTl 540 (893)
T KOG0291|consen 528 FRPDGKELAVATL 540 (893)
T ss_pred EcCCCCeEEEEEe
Confidence 9999654443333
No 31
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.3e-24 Score=217.92 Aligned_cols=199 Identities=12% Similarity=0.121 Sum_probs=164.6
Q ss_pred eeEEeccccCcEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEeeeCCCeEEEEEec-CCcEEEEEeCCCeEEEEECC
Q 037288 248 TMHLVASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCRSKSDILAQQVIH-SGNVVLCGFRNGAIVTVDVR 326 (513)
Q Consensus 248 ~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~-~~~~l~sg~~dg~i~iwd~~ 326 (513)
.+..+.||...|.++.|+.++-+|.++.|.+|+||++....++.++.|..-|+||+|+| |.+++++|+.||.|+||++.
T Consensus 361 P~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~ 440 (712)
T KOG0283|consen 361 PFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSIS 440 (712)
T ss_pred chhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccccceEEeecC
Confidence 36679999999999999999888888899999999999999999999999999999999 66999999999999999998
Q ss_pred CCccccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeEeec-------CCCceEEEEEcCCCCE
Q 037288 327 KRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTFM-------PSSISCLQSLQLYDQY 389 (513)
Q Consensus 327 ~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~ 389 (513)
..+. .-...-..-|++++|.| ..+.|+ |+....++.....+.. ...|+.+.+++.+...
T Consensus 441 d~~V----v~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~ 516 (712)
T KOG0283|consen 441 DKKV----VDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDE 516 (712)
T ss_pred cCee----EeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCe
Confidence 7763 24444558899999999 555555 4444433333333322 2268888888777777
Q ss_pred EEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 037288 390 FLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRS 452 (513)
Q Consensus 390 l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~ 452 (513)
+++.+.|..|+|||++ +...+..|+|+.+.-..+...|+.||++|++|++|..|+||++..
T Consensus 517 vLVTSnDSrIRI~d~~--~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 517 VLVTSNDSRIRIYDGR--DKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred EEEecCCCceEEEecc--chhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 8888999999999998 677899999988776667789999999999999999999999743
No 32
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.94 E-value=6.2e-24 Score=231.59 Aligned_cols=213 Identities=19% Similarity=0.293 Sum_probs=170.1
Q ss_pred CCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcC-CCCEEEEEeC-CeEEEEECCCCcEEEEeeeCCC
Q 037288 221 TTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCT-NPSQAVIGTN-LGAAMVDMETGMASWVCRSKSD 298 (513)
Q Consensus 221 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~-~g~~l~s~s~-~~i~vwd~~~~~~~~~~~~~~~ 298 (513)
..+|.+.+|++.+.. .+..+.+|...|++++|+| ++.+|++|+. +.|++||+.++..+..+.+...
T Consensus 552 ~~Dg~v~lWd~~~~~------------~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~ 619 (793)
T PLN00181 552 NFEGVVQVWDVARSQ------------LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKAN 619 (793)
T ss_pred eCCCeEEEEECCCCe------------EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCC
Confidence 357888888876432 3456789999999999997 7889988865 5699999999988888877778
Q ss_pred eEEEEEe-cCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCc
Q 037288 299 ILAQQVI-HSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSI 377 (513)
Q Consensus 299 V~~l~~~-~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v 377 (513)
|.+++|+ ++|.+|++|+.||.|++||++.... . +..+.+|...|.++.|
T Consensus 620 v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~-~-~~~~~~h~~~V~~v~f---------------------------- 669 (793)
T PLN00181 620 ICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL-P-LCTMIGHSKTVSYVRF---------------------------- 669 (793)
T ss_pred eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc-c-ceEecCCCCCEEEEEE----------------------------
Confidence 9999996 4689999999999999999987642 1 3456778777777544
Q ss_pred eEEEEEcCCCCEEEEEecCCeEEEEecCCCC----ccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 037288 378 SCLQSLQLYDQYFLASSMDGTVKLYDHRLTT----RGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSG 453 (513)
Q Consensus 378 ~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~----~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~ 453 (513)
. ++.+|++++.|+.|++||++... ..++.++.+|.+.+.. ++|+|++.+|++|+.|+.|++|+....
T Consensus 670 ------~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~--v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 670 ------V-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNF--VGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred ------e-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeE--EEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 2 57889999999999999997321 2368889999988877 789999999999999999999998776
Q ss_pred eEEEEe-------------cCCCCCeEEEEEcCCCceEEeeCCC
Q 037288 454 ELVFED-------------KFSNSVPSAVCWRTQRSMGPQIEGK 484 (513)
Q Consensus 454 ~~~~~~-------------~~~~~~v~~v~~~p~~~~~~t~~~~ 484 (513)
.++..+ ..+...|.+++|+|++.++++++.+
T Consensus 741 ~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~d 784 (793)
T PLN00181 741 MPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANST 784 (793)
T ss_pred CceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCC
Confidence 544332 2234569999999998777776655
No 33
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.94 E-value=1.6e-24 Score=197.96 Aligned_cols=230 Identities=16% Similarity=0.180 Sum_probs=181.1
Q ss_pred EEeccccCcEEEEEEcCCC---CEEEEEeC-CeEEEEECCCCcEE-----EEeeeCCCeEEEEEecCCcEEEEEeCCCeE
Q 037288 250 HLVASFKCTVWTADFCTNP---SQAVIGTN-LGAAMVDMETGMAS-----WVCRSKSDILAQQVIHSGNVVLCGFRNGAI 320 (513)
Q Consensus 250 ~~~~~h~~~V~~~~~s~~g---~~l~s~s~-~~i~vwd~~~~~~~-----~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i 320 (513)
..+.||.++|.+++|.... ..+++++. .++++|..+.+... ...+|+..|-+++..++|..+++|+.|.+|
T Consensus 138 ~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~l 217 (423)
T KOG0313|consen 138 KTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTML 217 (423)
T ss_pred EEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeeccccee
Confidence 3477888999988886432 24676654 55999988776522 112588999999999999999999999999
Q ss_pred EEEECCCC-----------------------ccccccccccccCcCeEEEeeCC--eEEEeE-------eecccCcccce
Q 037288 321 VTVDVRKR-----------------------QRGCSSRAGRRHRIPYSRLQRND--RVTNEQ-------WFELKANIWPS 368 (513)
Q Consensus 321 ~iwd~~~~-----------------------~~~~~~~~~~~h~~~v~~v~~~~--~~~s~~-------w~~~~~~~~~~ 368 (513)
.+|+.... ... .+..+.+|..+|.++.|.+ .+++++ ||+..+...
T Consensus 218 kiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~-P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~-- 294 (423)
T KOG0313|consen 218 KIWSVETDEEDELESSSNRRRKKQKREKEGGTRT-PLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLK-- 294 (423)
T ss_pred eecccCCCccccccccchhhhhhhhhhhcccccC-ceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccce--
Confidence 99993110 112 2667899999999999998 777777 888777654
Q ss_pred eEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCcc-ceEEecCCCCceeEEEEEEcCCC-CEEEEEeCCCcEE
Q 037288 369 HTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRG-AVQSYEGHVNSHTRIQLGVDQSE-RFVMSGGEDCKLR 446 (513)
Q Consensus 369 ~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~-~~~~~~~h~~~v~~~~~~~s~~g-~~l~sg~~Dg~v~ 446 (513)
..+..+....|+ .+++..++|++|+.|..|++||.|..... ..++|.+|.+.|.. +.|+|.. ..|++|+.|++++
T Consensus 295 ~~~~~~ksl~~i-~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVss--vkwsp~~~~~~~S~S~D~t~k 371 (423)
T KOG0313|consen 295 STLTTNKSLNCI-SYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSS--VKWSPTNEFQLVSGSYDNTVK 371 (423)
T ss_pred eeeecCcceeEe-ecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhh--eecCCCCceEEEEEecCCeEE
Confidence 344455666665 67789999999999999999999965544 77899999999888 8899965 5688999999999
Q ss_pred EEeCCCCe-EEEEecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288 447 IWSIRSGE-LVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIH 486 (513)
Q Consensus 447 vwd~~~~~-~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~ 486 (513)
+||+++.+ ++..+..|...|.++.|+.. ..+++++.|-.
T Consensus 372 lWDvRS~k~plydI~~h~DKvl~vdW~~~-~~IvSGGaD~~ 411 (423)
T KOG0313|consen 372 LWDVRSTKAPLYDIAGHNDKVLSVDWNEG-GLIVSGGADNK 411 (423)
T ss_pred EEEeccCCCcceeeccCCceEEEEeccCC-ceEEeccCcce
Confidence 99999988 99999999999999999966 44555555533
No 34
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.94 E-value=3.1e-25 Score=201.02 Aligned_cols=193 Identities=17% Similarity=0.178 Sum_probs=169.2
Q ss_pred eccccCcEEEEEEcCCCCEEEEEeCCe-EEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCc
Q 037288 252 VASFKCTVWTADFCTNPSQAVIGTNLG-AAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQ 329 (513)
Q Consensus 252 ~~~h~~~V~~~~~s~~g~~l~s~s~~~-i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~ 329 (513)
+.||-..|..+++|+-..|+.+++++. |+.||++..+.++-+. |-+.|.|++.+|.-.+|++|++|.++++||+|+..
T Consensus 189 ltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~ 268 (460)
T KOG0285|consen 189 LTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA 268 (460)
T ss_pred ecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccc
Confidence 678889999999999999999887655 9999999998776554 88899999999999999999999999999999987
Q ss_pred cccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCc
Q 037288 330 RGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTR 409 (513)
Q Consensus 330 ~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~ 409 (513)
. +..+.+|..+|..+.+ .+-...+++|+.|++|++||++ ..
T Consensus 269 ~---V~~l~GH~~~V~~V~~----------------------------------~~~dpqvit~S~D~tvrlWDl~--ag 309 (460)
T KOG0285|consen 269 S---VHVLSGHTNPVASVMC----------------------------------QPTDPQVITGSHDSTVRLWDLR--AG 309 (460)
T ss_pred e---EEEecCCCCcceeEEe----------------------------------ecCCCceEEecCCceEEEeeec--cC
Confidence 6 4589999999988544 3345678999999999999998 56
Q ss_pred cceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288 410 GAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIH 486 (513)
Q Consensus 410 ~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~ 486 (513)
+...++..|...+.+ ++.+|....+++++.|. |+-|++..|..+..+..|.+.|++++.+.++.+++.++...-
T Consensus 310 kt~~tlt~hkksvra--l~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~ 383 (460)
T KOG0285|consen 310 KTMITLTHHKKSVRA--LCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSI 383 (460)
T ss_pred ceeEeeecccceeeE--EecCCchhhhhccCCcc-ceeccCCccchhhccccccceeeeeeeccCceEEEcCCceEE
Confidence 678888888877766 88899999999999875 999999999999999999999999999999999988877765
No 35
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.8e-24 Score=216.24 Aligned_cols=235 Identities=13% Similarity=0.062 Sum_probs=196.7
Q ss_pred CceeEEeccccCcEEEEEEcCCCCEEEEEeCCe-EEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEE
Q 037288 246 RSTMHLVASFKCTVWTADFCTNPSQAVIGTNLG-AAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTV 323 (513)
Q Consensus 246 ~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~~-i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iw 323 (513)
...+..+..|.++|..++|+|++.++++|+|+- |+||+..+.+++.++. |-.-|..+.|++.-..|++++.|.+|+||
T Consensus 41 ~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIW 120 (1202)
T KOG0292|consen 41 GTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIW 120 (1202)
T ss_pred hhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEE
Confidence 334566889999999999999999999999886 9999999999876654 77789999999999999999999999999
Q ss_pred ECCCCccccccccccccCcCeEEEeeCC---eEEEeE-------eecccC---cccce----------------------
Q 037288 324 DVRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKA---NIWPS---------------------- 368 (513)
Q Consensus 324 d~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~---~~~~~---------------------- 368 (513)
+..++..+. .+.||...|.|..|+| .+++++ ||...- ...+.
T Consensus 121 Nwqsr~~ia---vltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaV 197 (1202)
T KOG0292|consen 121 NWQSRKCIA---VLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAV 197 (1202)
T ss_pred eccCCceEE---EEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCee
Confidence 999998755 9999999999999999 788887 886432 11111
Q ss_pred --eEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCcc--ceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCc
Q 037288 369 --HTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRG--AVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCK 444 (513)
Q Consensus 369 --~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~--~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~ 444 (513)
+.+..++....-++|+|.-.+|++|+.|..|++|.+. ..+ .+-+..||.+.|.+ +-|+|...+|+|.|+|++
T Consensus 198 VK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmn--etKaWEvDtcrgH~nnVss--vlfhp~q~lIlSnsEDks 273 (1202)
T KOG0292|consen 198 VKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMN--ETKAWEVDTCRGHYNNVSS--VLFHPHQDLILSNSEDKS 273 (1202)
T ss_pred eeeeecccccccceEEecCCcceEEecCCcceeeEEEec--cccceeehhhhcccCCcce--EEecCccceeEecCCCcc
Confidence 1111223333335788888999999999999999987 444 67788999999988 899999999999999999
Q ss_pred EEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCCeee
Q 037288 445 LRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIHE 487 (513)
Q Consensus 445 v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~~ 487 (513)
|+|||+...+.+++++......+.++-+|...+||.....--.
T Consensus 274 irVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~ 316 (1202)
T KOG0292|consen 274 IRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMI 316 (1202)
T ss_pred EEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCceE
Confidence 9999999999999998888899999999997777766555443
No 36
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=3.1e-24 Score=197.89 Aligned_cols=230 Identities=17% Similarity=0.138 Sum_probs=184.2
Q ss_pred EEeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEEeeeC--CCeEEEEEecCCcEEEEEeCCCeEEEEECC
Q 037288 250 HLVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWVCRSK--SDILAQQVIHSGNVVLCGFRNGAIVTVDVR 326 (513)
Q Consensus 250 ~~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~~~~~--~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~ 326 (513)
.++.+|..+|.-+.||||.+++++|+ +..+.+||+.+|.....+.+. ..+.+++|.|||..+++|+.|+.|..||+.
T Consensus 263 ~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD 342 (519)
T KOG0293|consen 263 KTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD 342 (519)
T ss_pred eeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC
Confidence 45889999999999999999888775 555999999999988888755 669999999999999999999999999998
Q ss_pred CCccccccccccccC-cCeEEEeeCC---eEEEeE-------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEec
Q 037288 327 KRQRGCSSRAGRRHR-IPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSM 395 (513)
Q Consensus 327 ~~~~~~~~~~~~~h~-~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~ 395 (513)
... +....+.+ ..|.+++..+ .++... ++..... ....+....++++. .++.+++++++.-.
T Consensus 343 gn~----~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~--dr~lise~~~its~-~iS~d~k~~LvnL~ 415 (519)
T KOG0293|consen 343 GNI----LGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARV--DRGLISEEQPITSF-SISKDGKLALVNLQ 415 (519)
T ss_pred cch----hhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhh--hhccccccCceeEE-EEcCCCcEEEEEcc
Confidence 664 22344433 3477777766 333222 1111110 11134445566665 78999999999999
Q ss_pred CCeEEEEecCCCCccceEEecCCCCceeEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCC
Q 037288 396 DGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQ-SERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQ 474 (513)
Q Consensus 396 dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~-~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~ 474 (513)
+..|++||+. +...++.|.||......+.-+|.- +..++++|++|+.|+||+..+|+++.++.+|...|++|+|+|.
T Consensus 416 ~qei~LWDl~--e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~ 493 (519)
T KOG0293|consen 416 DQEIHLWDLE--ENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPA 493 (519)
T ss_pred cCeeEEeecc--hhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCC
Confidence 9999999997 666889999999888887778864 4589999999999999999999999999999999999999998
Q ss_pred -CceEEeeCCCeeee
Q 037288 475 -RSMGPQIEGKIHEE 488 (513)
Q Consensus 475 -~~~~~t~~~~~~~~ 488 (513)
..|||+.+.|-.-.
T Consensus 494 ~p~m~ASasDDgtIR 508 (519)
T KOG0293|consen 494 DPEMFASASDDGTIR 508 (519)
T ss_pred CHHHhhccCCCCeEE
Confidence 78999988886533
No 37
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.93 E-value=5e-23 Score=196.23 Aligned_cols=210 Identities=19% Similarity=0.249 Sum_probs=173.1
Q ss_pred CCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEEee-eCCCe
Q 037288 222 TGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWVCR-SKSDI 299 (513)
Q Consensus 222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~~~-~~~~V 299 (513)
.+|.+.+|++.... .+..+..|...|.++.|++++.++++++ ++.+.+||+.+++....+. |...|
T Consensus 71 ~~~~i~i~~~~~~~------------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i 138 (289)
T cd00200 71 SDKTIRLWDLETGE------------CVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWV 138 (289)
T ss_pred CCCeEEEEEcCccc------------ceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcE
Confidence 36788888876432 2345678888999999999999999887 7779999999888776666 77789
Q ss_pred EEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceE
Q 037288 300 LAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISC 379 (513)
Q Consensus 300 ~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~ 379 (513)
.+++|+|++.++++++.|+.|++||++..+.. ..+..|...+.++
T Consensus 139 ~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~---~~~~~~~~~i~~~-------------------------------- 183 (289)
T cd00200 139 NSVAFSPDGTFVASSSQDGTIKLWDLRTGKCV---ATLTGHTGEVNSV-------------------------------- 183 (289)
T ss_pred EEEEEcCcCCEEEEEcCCCcEEEEEccccccc---eeEecCccccceE--------------------------------
Confidence 99999999999999988999999999876653 3555665556553
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEe
Q 037288 380 LQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFED 459 (513)
Q Consensus 380 ~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~ 459 (513)
.++++++.+++++.|+.|++||++ ....+..+..|...+.. +.|+|++.++++++.||.|++||+.+++++..+
T Consensus 184 --~~~~~~~~l~~~~~~~~i~i~d~~--~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~ 257 (289)
T cd00200 184 --AFSPDGEKLLSSSSDGTIKLWDLS--TGKCLGTLRGHENGVNS--VAFSPDGYLLASGSEDGTIRVWDLRTGECVQTL 257 (289)
T ss_pred --EECCCcCEEEEecCCCcEEEEECC--CCceecchhhcCCceEE--EEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEc
Confidence 456688889999999999999997 45577778788887766 889999989998888999999999999999999
Q ss_pred cCCCCCeEEEEEcCCCceEEeeCCC
Q 037288 460 KFSNSVPSAVCWRTQRSMGPQIEGK 484 (513)
Q Consensus 460 ~~~~~~v~~v~~~p~~~~~~t~~~~ 484 (513)
..|...+.+++|+|++.++++.+.+
T Consensus 258 ~~~~~~i~~~~~~~~~~~l~~~~~d 282 (289)
T cd00200 258 SGHTNSVTSLAWSPDGKRLASGSAD 282 (289)
T ss_pred cccCCcEEEEEECCCCCEEEEecCC
Confidence 8888899999999997777766655
No 38
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.93 E-value=2.6e-22 Score=198.01 Aligned_cols=230 Identities=14% Similarity=0.151 Sum_probs=202.9
Q ss_pred eeEEeccccCcEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCC
Q 037288 248 TMHLVASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRK 327 (513)
Q Consensus 248 ~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~ 327 (513)
.-..+.||...|.++++|.+...+++|+++.+++|+..+.++++++... .+.+..|-|.++++++|..+|.+.+||+.+
T Consensus 365 ~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~-y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS 443 (888)
T KOG0306|consen 365 SNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCG-YILASKFVPGDRYIVLGTKNGELQVFDLAS 443 (888)
T ss_pred ceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccc-cEEEEEecCCCceEEEeccCCceEEEEeeh
Confidence 4466889999999999999999999999999999999999999998765 899999999999999999999999999998
Q ss_pred CccccccccccccCcCeEEEeeCC---eEEEeE-------eecccC-----------cccceeEeecCCCceEEEEEcCC
Q 037288 328 RQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKA-----------NIWPSHTTFMPSSISCLQSLQLY 386 (513)
Q Consensus 328 ~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~ 386 (513)
... +.+..+|.++|++++..| .+++++ |+..-- .+....++...+.+.|+ .++||
T Consensus 444 ~~l---~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v-~~Spd 519 (888)
T KOG0306|consen 444 ASL---VETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCV-SVSPD 519 (888)
T ss_pred hhh---hhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEE-EEcCC
Confidence 876 447889999999999999 788887 775321 11233566678888886 88999
Q ss_pred CCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCe
Q 037288 387 DQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVP 466 (513)
Q Consensus 387 ~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v 466 (513)
|++|+++-.|.+|++|-++ +.+...++.||.-+|.+ +.++||++.+++||.|..|++|-+.-|.+-.++-+|+..|
T Consensus 520 gk~LaVsLLdnTVkVyflD--tlKFflsLYGHkLPV~s--mDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSv 595 (888)
T KOG0306|consen 520 GKLLAVSLLDNTVKVYFLD--TLKFFLSLYGHKLPVLS--MDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSV 595 (888)
T ss_pred CcEEEEEeccCeEEEEEec--ceeeeeeecccccceeE--EeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCce
Confidence 9999999999999999997 55567788999999877 8889999999999999999999999999999999999999
Q ss_pred EEEEEcCCCceEEeeCCCee
Q 037288 467 SAVCWRTQRSMGPQIEGKIH 486 (513)
Q Consensus 467 ~~v~~~p~~~~~~t~~~~~~ 486 (513)
.+|.|.|...+|-|++.|-.
T Consensus 596 m~V~F~P~~~~FFt~gKD~k 615 (888)
T KOG0306|consen 596 MSVQFLPKTHLFFTCGKDGK 615 (888)
T ss_pred eEEEEcccceeEEEecCcce
Confidence 99999999888888888766
No 39
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=9.7e-23 Score=178.71 Aligned_cols=261 Identities=11% Similarity=0.095 Sum_probs=188.0
Q ss_pred eeEEeccccCeEEEEEeecccccccceeEEeeeccccccccccccccCCCCCccccCcceeeecccceEEEecCCCCccc
Q 037288 124 DVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNKTESSKAPEHIWRLNKASILMPSSVSCIKLFGKHPSCA 203 (513)
Q Consensus 124 ~~l~tg~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~s~i~si~~~~~~~~~~ 203 (513)
.+|++++.|..||+|+...... -...-+ -...+...+.++.|+|.+..+...|
T Consensus 28 ~ilAscg~Dk~vriw~~~~~~s---~~ck~v---------ld~~hkrsVRsvAwsp~g~~La~aS--------------- 80 (312)
T KOG0645|consen 28 VILASCGTDKAVRIWSTSSGDS---WTCKTV---------LDDGHKRSVRSVAWSPHGRYLASAS--------------- 80 (312)
T ss_pred eEEEeecCCceEEEEecCCCCc---EEEEEe---------ccccchheeeeeeecCCCcEEEEee---------------
Confidence 4799999999999999853211 111111 1123334488999999865544443
Q ss_pred cCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeCCe-EEEE
Q 037288 204 TDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNLG-AAMV 282 (513)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~~-i~vw 282 (513)
-+..+.+|.-.+. .-.++..+.||...|.|++|+++|.+||+++.+. |-||
T Consensus 81 ------------------FD~t~~Iw~k~~~----------efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiW 132 (312)
T KOG0645|consen 81 ------------------FDATVVIWKKEDG----------EFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIW 132 (312)
T ss_pred ------------------ccceEEEeecCCC----------ceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEE
Confidence 1222223322211 1125778999999999999999999999998655 9999
Q ss_pred ECCCCc---EEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECC-CCccccccccccccCcCeEEEeeCCeEEEeE
Q 037288 283 DMETGM---ASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVR-KRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQ 357 (513)
Q Consensus 283 d~~~~~---~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~-~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~ 357 (513)
.+..+. +...++ |...|.-+.|+|...+|++++.|.+|++|+-. ...... ++++.+|..-|.+++|
T Consensus 133 e~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c-~~tl~g~~~TVW~~~F-------- 203 (312)
T KOG0645|consen 133 EIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWEC-VQTLDGHENTVWSLAF-------- 203 (312)
T ss_pred EecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeE-EEEecCccceEEEEEe--------
Confidence 987553 455554 88899999999999999999999999999877 555555 6789999888888554
Q ss_pred eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEE
Q 037288 358 WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVM 437 (513)
Q Consensus 358 w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~ 437 (513)
++.|..|++++.|++|+||-++ ..-+ ..|...++. +.|. ...|+
T Consensus 204 --------------------------~~~G~rl~s~sdD~tv~Iw~~~--~~~~----~~~sr~~Y~--v~W~--~~~Ia 247 (312)
T KOG0645|consen 204 --------------------------DNIGSRLVSCSDDGTVSIWRLY--TDLS----GMHSRALYD--VPWD--NGVIA 247 (312)
T ss_pred --------------------------cCCCceEEEecCCcceEeeeec--cCcc----hhcccceEe--eeec--ccceE
Confidence 5589999999999999999965 1111 126666665 6666 45799
Q ss_pred EEeCCCcEEEEeCCCC------eEEE-EecCCCCCeEEEEEcCC-CceEEeeCCC
Q 037288 438 SGGEDCKLRIWSIRSG------ELVF-EDKFSNSVPSAVCWRTQ-RSMGPQIEGK 484 (513)
Q Consensus 438 sg~~Dg~v~vwd~~~~------~~~~-~~~~~~~~v~~v~~~p~-~~~~~t~~~~ 484 (513)
+++.|+.|++|.-... +++. .-..|+..|++++|+|. ...+++++.|
T Consensus 248 S~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DD 302 (312)
T KOG0645|consen 248 SGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDD 302 (312)
T ss_pred eccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCC
Confidence 9999999999976542 1222 23567888999999996 5666666655
No 40
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.92 E-value=6.7e-24 Score=200.82 Aligned_cols=202 Identities=12% Similarity=0.141 Sum_probs=158.0
Q ss_pred eEEeccccCcEEEEEEcCCCC--EEEEEeCCeEEEEECCCCc-EEEEeee------CCCeEEEEEecCCcEEEEEeCCCe
Q 037288 249 MHLVASFKCTVWTADFCTNPS--QAVIGTNLGAAMVDMETGM-ASWVCRS------KSDILAQQVIHSGNVVLCGFRNGA 319 (513)
Q Consensus 249 ~~~~~~h~~~V~~~~~s~~g~--~l~s~s~~~i~vwd~~~~~-~~~~~~~------~~~V~~l~~~~~~~~l~sg~~dg~ 319 (513)
+...+||...++|.+|+|..+ +|.++.|++++|||+...+ ....+.+ .-.+++++|++||++||+|+.||.
T Consensus 261 m~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGS 340 (641)
T KOG0772|consen 261 MYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGS 340 (641)
T ss_pred hhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCc
Confidence 455789999999999999654 4444556779999998654 3333432 235899999999999999999999
Q ss_pred EEEEECCCCccccccccccccCc--CeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCC
Q 037288 320 IVTVDVRKRQRGCSSRAGRRHRI--PYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDG 397 (513)
Q Consensus 320 i~iwd~~~~~~~~~~~~~~~h~~--~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg 397 (513)
|.+||.+.....+.+..-.+|.. .|++ +.|+++|++|++-+.|+
T Consensus 341 IQ~W~~~~~~v~p~~~vk~AH~~g~~Its----------------------------------i~FS~dg~~LlSRg~D~ 386 (641)
T KOG0772|consen 341 IQIWDKGSRTVRPVMKVKDAHLPGQDITS----------------------------------ISFSYDGNYLLSRGFDD 386 (641)
T ss_pred eeeeecCCcccccceEeeeccCCCCceeE----------------------------------EEeccccchhhhccCCC
Confidence 99999876544332233344433 4444 46788999999999999
Q ss_pred eEEEEecCCCCcc-ceEEecCCCCceeEEEEEEcCCCCEEEEEeC------CCcEEEEeCCCCeEEEEecCCCCCeEEEE
Q 037288 398 TVKLYDHRLTTRG-AVQSYEGHVNSHTRIQLGVDQSERFVMSGGE------DCKLRIWSIRSGELVFEDKFSNSVPSAVC 470 (513)
Q Consensus 398 ~i~lwd~~~~~~~-~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~------Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~ 470 (513)
++++||+| +.+ ++.+..+-.+......++|||+.++|++|.. -|++.+||..+-+.++.+......|..+.
T Consensus 387 tLKvWDLr--q~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~ 464 (641)
T KOG0772|consen 387 TLKVWDLR--QFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCL 464 (641)
T ss_pred ceeeeecc--ccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEe
Confidence 99999999 444 7888877776666667999999999999865 57899999999999999888888899999
Q ss_pred EcCC-CceEEeeCCCee
Q 037288 471 WRTQ-RSMGPQIEGKIH 486 (513)
Q Consensus 471 ~~p~-~~~~~t~~~~~~ 486 (513)
|+|. +.++++++.+..
T Consensus 465 WhpkLNQi~~gsgdG~~ 481 (641)
T KOG0772|consen 465 WHPKLNQIFAGSGDGTA 481 (641)
T ss_pred ecchhhheeeecCCCce
Confidence 9999 777777665544
No 41
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=3.2e-22 Score=179.59 Aligned_cols=207 Identities=12% Similarity=0.101 Sum_probs=164.4
Q ss_pred cCceeEEeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEE
Q 037288 245 RRSTMHLVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTV 323 (513)
Q Consensus 245 ~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iw 323 (513)
....+..+.||...|..++.+|-+..+.+++ |++|++||++..++...+.... -..++|.|+|-++|+|.....|++|
T Consensus 89 dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~-~pi~AfDp~GLifA~~~~~~~IkLy 167 (311)
T KOG1446|consen 89 DNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG-RPIAAFDPEGLIFALANGSELIKLY 167 (311)
T ss_pred cCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC-CcceeECCCCcEEEEecCCCeEEEE
Confidence 4445678999999999999999778777765 6689999999888776665333 2356799999999999888899999
Q ss_pred ECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEe
Q 037288 324 DVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYD 403 (513)
Q Consensus 324 d~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd 403 (513)
|+|.-...+ ...+.-.. ........ +.|+|+|++++.++..+.+++.|
T Consensus 168 D~Rs~dkgP-F~tf~i~~------------------------------~~~~ew~~-l~FS~dGK~iLlsT~~s~~~~lD 215 (311)
T KOG1446|consen 168 DLRSFDKGP-FTTFSITD------------------------------NDEAEWTD-LEFSPDGKSILLSTNASFIYLLD 215 (311)
T ss_pred EecccCCCC-ceeEccCC------------------------------CCccceee-eEEcCCCCEEEEEeCCCcEEEEE
Confidence 999876544 22221110 00112222 47899999999999999999999
Q ss_pred cCCCCccceEEecCCCCce-eEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecC-CCCCeEEEEEcCCCceEEee
Q 037288 404 HRLTTRGAVQSYEGHVNSH-TRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKF-SNSVPSAVCWRTQRSMGPQI 481 (513)
Q Consensus 404 ~~~~~~~~~~~~~~h~~~v-~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~-~~~~v~~v~~~p~~~~~~t~ 481 (513)
.- ......++.++.+.- ..+..+|+||++++++|+.||+|.+|++++++.+..+.+ +.+++.++.|+|...|++|+
T Consensus 216 Af--~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa 293 (311)
T KOG1446|consen 216 AF--DGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA 293 (311)
T ss_pred cc--CCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec
Confidence 86 444777888776543 125689999999999999999999999999999999888 68999999999999999999
Q ss_pred CCCee
Q 037288 482 EGKIH 486 (513)
Q Consensus 482 ~~~~~ 486 (513)
+..+.
T Consensus 294 ~s~l~ 298 (311)
T KOG1446|consen 294 SSNLV 298 (311)
T ss_pred CceEE
Confidence 88765
No 42
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=4.2e-24 Score=185.51 Aligned_cols=250 Identities=17% Similarity=0.221 Sum_probs=189.0
Q ss_pred EEEEcccccccchhheeeeeeeeCCCCceeeeeEEeccccCeEEEEEeecccccccceeEEeeeccccccccccccccCC
Q 037288 93 VWRYEATNQTGDITLEQIELNVQTPEGQFRTDVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNKTESSKA 172 (513)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~tg~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (513)
...|+-.+.+.|.++.+-. .+++++++.||+++||++..... ++..-+++..++
T Consensus 54 ~~s~d~~D~LfdV~Wse~~-----------e~~~~~a~GDGSLrl~d~~~~s~---------------Pi~~~kEH~~EV 107 (311)
T KOG0277|consen 54 CQSYDTEDGLFDVAWSENH-----------ENQVIAASGDGSLRLFDLTMPSK---------------PIHKFKEHKREV 107 (311)
T ss_pred EEeeecccceeEeeecCCC-----------cceEEEEecCceEEEeccCCCCc---------------chhHHHhhhhhe
Confidence 4445555666666666544 57899999999999999644331 122555666778
Q ss_pred CCCccccCcceeeecccceEEEecCCCCccccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEe
Q 037288 173 PEHIWRLNKASILMPSSVSCIKLFGKHPSCATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLV 252 (513)
Q Consensus 173 ~~~~w~p~~~~~~~~s~i~si~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (513)
.++-|++......+.+ ..+|.+.+|+..-+. .+.++
T Consensus 108 ~Svdwn~~~r~~~lts--------------------------------SWD~TiKLW~~~r~~------------Sv~Tf 143 (311)
T KOG0277|consen 108 YSVDWNTVRRRIFLTS--------------------------------SWDGTIKLWDPNRPN------------SVQTF 143 (311)
T ss_pred EEeccccccceeEEee--------------------------------ccCCceEeecCCCCc------------ceEee
Confidence 8888876532222111 357777777665443 35779
Q ss_pred ccccCcEEEEEEcC-CCCEEEEEe-CCeEEEEECCC-CcEEEEeeeCCCeEEEEEec-CCcEEEEEeCCCeEEEEECCCC
Q 037288 253 ASFKCTVWTADFCT-NPSQAVIGT-NLGAAMVDMET-GMASWVCRSKSDILAQQVIH-SGNVVLCGFRNGAIVTVDVRKR 328 (513)
Q Consensus 253 ~~h~~~V~~~~~s~-~g~~l~s~s-~~~i~vwd~~~-~~~~~~~~~~~~V~~l~~~~-~~~~l~sg~~dg~i~iwd~~~~ 328 (513)
.+|...|+...|+| .++++++++ |+.+++||++. |+.+.+..|...++|+.|+. +.++|++|+.|+.|++||+++.
T Consensus 144 ~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~ 223 (311)
T KOG0277|consen 144 NGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNL 223 (311)
T ss_pred cCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhc
Confidence 99999999999999 667888774 56699999875 45555556888999999997 5589999999999999999987
Q ss_pred ccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCC
Q 037288 329 QRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTT 408 (513)
Q Consensus 329 ~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~ 408 (513)
+. + +..+.+|.-+|+.+.|+| .....|++++.|-+++|||... .
T Consensus 224 r~-p-l~eL~gh~~AVRkvk~Sp---------------------------------h~~~lLaSasYDmT~riw~~~~-~ 267 (311)
T KOG0277|consen 224 RT-P-LFELNGHGLAVRKVKFSP---------------------------------HHASLLASASYDMTVRIWDPER-Q 267 (311)
T ss_pred cc-c-ceeecCCceEEEEEecCc---------------------------------chhhHhhhccccceEEeccccc-c
Confidence 63 3 778899999999988866 2356899999999999999852 1
Q ss_pred ccceEEecCCCCceeEEEEEEcC-CCCEEEEEeCCCcEEEEeC
Q 037288 409 RGAVQSYEGHVNSHTRIQLGVDQ-SERFVMSGGEDCKLRIWSI 450 (513)
Q Consensus 409 ~~~~~~~~~h~~~v~~~~~~~s~-~g~~l~sg~~Dg~v~vwd~ 450 (513)
...+.++..|+..+.. ++|++ ++.++++.+.|+.++||+.
T Consensus 268 ds~~e~~~~HtEFv~g--~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 268 DSAIETVDHHTEFVCG--LDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhhhhhhhccceEEec--cccccccCceeeecccccceeeecc
Confidence 2377888889888766 66665 6789999999999999984
No 43
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.92 E-value=5.8e-22 Score=188.32 Aligned_cols=296 Identities=14% Similarity=0.164 Sum_probs=198.8
Q ss_pred eEEeccccCeEEEEEeecccccccceeEEeeeccccccccccccccCCCCCccccCcceeeecccceEEEecCCCCcccc
Q 037288 125 VLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNKTESSKAPEHIWRLNKASILMPSSVSCIKLFGKHPSCAT 204 (513)
Q Consensus 125 ~l~tg~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~s~i~si~~~~~~~~~~~ 204 (513)
-++||+.|+.|.+|+- +...+.. ...++...++++-++|++..+...+
T Consensus 162 Ri~T~sdDn~v~ffeG--PPFKFk~--------------s~r~HskFV~~VRysPDG~~Fat~g---------------- 209 (603)
T KOG0318|consen 162 RIATGSDDNTVAFFEG--PPFKFKS--------------SFREHSKFVNCVRYSPDGSRFATAG---------------- 209 (603)
T ss_pred EEEeccCCCeEEEeeC--CCeeeee--------------cccccccceeeEEECCCCCeEEEec----------------
Confidence 5789999999999884 3323222 2333344477777777744433222
Q ss_pred CCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEE-eCCeEEEEE
Q 037288 205 DGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIG-TNLGAAMVD 283 (513)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~-s~~~i~vwd 283 (513)
.+|.+.+|+=.+.+.+.. +..-.+|++.|++++|+||+..++++ +|.+++|||
T Consensus 210 -----------------sDgki~iyDGktge~vg~---------l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWd 263 (603)
T KOG0318|consen 210 -----------------SDGKIYIYDGKTGEKVGE---------LEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWD 263 (603)
T ss_pred -----------------CCccEEEEcCCCccEEEE---------ecCCCCccccEEEEEECCCCceEEEecCCceEEEEE
Confidence 466666666554433311 11134899999999999999998877 566799999
Q ss_pred CCCCcEEEEe--------------------------------------------eeCCCeEEEEEecCCcEEEEEeCCCe
Q 037288 284 METGMASWVC--------------------------------------------RSKSDILAQQVIHSGNVVLCGFRNGA 319 (513)
Q Consensus 284 ~~~~~~~~~~--------------------------------------------~~~~~V~~l~~~~~~~~l~sg~~dg~ 319 (513)
+.+++++.++ .|...|+++..++++..|++|+.||.
T Consensus 264 Vs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~ 343 (603)
T KOG0318|consen 264 VSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGH 343 (603)
T ss_pred eeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCce
Confidence 9876433222 26678999999999999999999999
Q ss_pred EEEEECCCCccccccccccccCcCeEEEeeCC--eEEE------------------------------------------
Q 037288 320 IVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND--RVTN------------------------------------------ 355 (513)
Q Consensus 320 i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~--~~~s------------------------------------------ 355 (513)
|.-||...+.... + .-.+|...|.+++-+. .+++
T Consensus 344 I~~W~~~~g~~~~-~-~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~av 421 (603)
T KOG0318|consen 344 INSWDSGSGTSDR-L-AGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAV 421 (603)
T ss_pred EEEEecCCccccc-c-ccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEE
Confidence 9999997765421 0 0022332222222111 1111
Q ss_pred ---------------------------------------eE-------eecccCcccce-eEeecCCCceEEEEEcCCCC
Q 037288 356 ---------------------------------------EQ-------WFELKANIWPS-HTTFMPSSISCLQSLQLYDQ 388 (513)
Q Consensus 356 ---------------------------------------~~-------w~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~ 388 (513)
|+ |.+..+.+... ....|...++++ .++|++.
T Consensus 422 v~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~v-aySpd~~ 500 (603)
T KOG0318|consen 422 VACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDV-AYSPDGA 500 (603)
T ss_pred EEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEE-EECCCCc
Confidence 11 33333332222 344556667765 8999999
Q ss_pred EEEEEecCCeEEEEecCCCCcc-ceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-EEEEecCCCCCe
Q 037288 389 YFLASSMDGTVKLYDHRLTTRG-AVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGE-LVFEDKFSNSVP 466 (513)
Q Consensus 389 ~l~s~s~dg~i~lwd~~~~~~~-~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~-~~~~~~~~~~~v 466 (513)
+||++...+.|.+||.. +.. ....+.-|+..|.+ ++|+|+..++|+|+.|-.|.||++.... .+.....|...|
T Consensus 501 yla~~Da~rkvv~yd~~--s~~~~~~~w~FHtakI~~--~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gV 576 (603)
T KOG0318|consen 501 YLAAGDASRKVVLYDVA--SREVKTNRWAFHTAKINC--VAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGV 576 (603)
T ss_pred EEEEeccCCcEEEEEcc--cCceecceeeeeeeeEEE--EEeCCCceEEEeccccceEEEEEccChhhheEeccccccCc
Confidence 99999999999999996 333 33344558888877 9999999999999999999999998754 344456777779
Q ss_pred EEEEEcCCCceEEeeCCCee
Q 037288 467 SAVCWRTQRSMGPQIEGKIH 486 (513)
Q Consensus 467 ~~v~~~p~~~~~~t~~~~~~ 486 (513)
+.+.|-.+.. +++++.|-.
T Consensus 577 n~v~wlde~t-vvSsG~Da~ 595 (603)
T KOG0318|consen 577 NSVAWLDEST-VVSSGQDAN 595 (603)
T ss_pred eeEEEecCce-EEeccCcce
Confidence 9999997654 455555543
No 44
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=7.3e-24 Score=184.04 Aligned_cols=213 Identities=15% Similarity=0.142 Sum_probs=172.8
Q ss_pred CCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCC-CCEEEEE-eCCeEEEEECCCCcEEEEee-eCCC
Q 037288 222 TGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTN-PSQAVIG-TNLGAAMVDMETGMASWVCR-SKSD 298 (513)
Q Consensus 222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~-g~~l~s~-s~~~i~vwd~~~~~~~~~~~-~~~~ 298 (513)
.+|++.+|++..+.. +++.++.|...|.+++|++. ++.++++ -|++|++|+...+..+.++. |.+-
T Consensus 81 GDGSLrl~d~~~~s~-----------Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~ 149 (311)
T KOG0277|consen 81 GDGSLRLFDLTMPSK-----------PIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSC 149 (311)
T ss_pred cCceEEEeccCCCCc-----------chhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccE
Confidence 588999998542222 36678999999999999984 4444444 58899999999888777766 7777
Q ss_pred eEEEEEecC-CcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCc
Q 037288 299 ILAQQVIHS-GNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSI 377 (513)
Q Consensus 299 V~~l~~~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v 377 (513)
|...+|+|. ++++++++.|+++++||++...... .+..|...|.+++|+.
T Consensus 150 Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~---~i~ah~~Eil~cdw~k-------------------------- 200 (311)
T KOG0277|consen 150 IYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFM---SIEAHNSEILCCDWSK-------------------------- 200 (311)
T ss_pred EEEEecCCCCCCeEEEccCCceEEEEEecCCCcee---EEEeccceeEeecccc--------------------------
Confidence 999999994 5999999999999999999886533 5888888888877743
Q ss_pred eEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCe-E
Q 037288 378 SCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQS-ERFVMSGGEDCKLRIWSIRSGE-L 455 (513)
Q Consensus 378 ~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~-g~~l~sg~~Dg~v~vwd~~~~~-~ 455 (513)
-+.+.|+||+.|+.|+.||+|.. +.++..+.+|.-.|.. +.|||. -..|++++.|-+++|||...+. .
T Consensus 201 -------y~~~vl~Tg~vd~~vr~wDir~~-r~pl~eL~gh~~AVRk--vk~Sph~~~lLaSasYDmT~riw~~~~~ds~ 270 (311)
T KOG0277|consen 201 -------YNHNVLATGGVDNLVRGWDIRNL-RTPLFELNGHGLAVRK--VKFSPHHASLLASASYDMTVRIWDPERQDSA 270 (311)
T ss_pred -------cCCcEEEecCCCceEEEEehhhc-cccceeecCCceEEEE--EecCcchhhHhhhccccceEEecccccchhh
Confidence 36789999999999999999942 2388899999987766 889986 4688999999999999998544 5
Q ss_pred EEEecCCCCCeEEEEEcCC-CceEEeeCCC
Q 037288 456 VFEDKFSNSVPSAVCWRTQ-RSMGPQIEGK 484 (513)
Q Consensus 456 ~~~~~~~~~~v~~v~~~p~-~~~~~t~~~~ 484 (513)
+.+...|..-+..+.|++. +..+|+++-|
T Consensus 271 ~e~~~~HtEFv~g~Dws~~~~~~vAs~gWD 300 (311)
T KOG0277|consen 271 IETVDHHTEFVCGLDWSLFDPGQVASTGWD 300 (311)
T ss_pred hhhhhccceEEeccccccccCceeeecccc
Confidence 5667888888999999998 6788887766
No 45
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.92 E-value=4.1e-22 Score=189.87 Aligned_cols=222 Identities=16% Similarity=0.202 Sum_probs=182.1
Q ss_pred EeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCC
Q 037288 251 LVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKR 328 (513)
Q Consensus 251 ~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~ 328 (513)
.+.+|..+|.+++|+|+++++++++ ++.+++||+.+++...... |...+.++.|+++++.|++++.||.|++||+...
T Consensus 4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~ 83 (289)
T cd00200 4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG 83 (289)
T ss_pred HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc
Confidence 4678999999999999999999887 6679999999887555544 6677889999999999999999999999999986
Q ss_pred ccccccccccccCcCeEEEeeCC--e-EEEeE-------eecccCcccceeEee-cCCCceEEEEEcCCCCEEEEEecCC
Q 037288 329 QRGCSSRAGRRHRIPYSRLQRND--R-VTNEQ-------WFELKANIWPSHTTF-MPSSISCLQSLQLYDQYFLASSMDG 397 (513)
Q Consensus 329 ~~~~~~~~~~~h~~~v~~v~~~~--~-~~s~~-------w~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~s~dg 397 (513)
+. ...+..|...+.++.|++ . ++++. |+...++. ...+. +...+.++ .+++++.++++++.|+
T Consensus 84 ~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~-~~~~~~~~l~~~~~~~ 157 (289)
T cd00200 84 EC---VRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKC--LTTLRGHTDWVNSV-AFSPDGTFVASSSQDG 157 (289)
T ss_pred cc---eEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEE--EEEeccCCCcEEEE-EEcCcCCEEEEEcCCC
Confidence 54 447788999999999998 3 33333 77664442 22333 44456665 6778888888888899
Q ss_pred eEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCce
Q 037288 398 TVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSM 477 (513)
Q Consensus 398 ~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~ 477 (513)
.|++||++ ....+..+..|...+.. +.|+|+++.+++++.|+.|++||+.+++.+..+..|...+.+++|+|++.+
T Consensus 158 ~i~i~d~~--~~~~~~~~~~~~~~i~~--~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 233 (289)
T cd00200 158 TIKLWDLR--TGKCVATLTGHTGEVNS--VAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYL 233 (289)
T ss_pred cEEEEEcc--ccccceeEecCccccce--EEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcE
Confidence 99999997 45577788888877766 889999999999999999999999999999988788889999999999777
Q ss_pred EEeeC
Q 037288 478 GPQIE 482 (513)
Q Consensus 478 ~~t~~ 482 (513)
+++++
T Consensus 234 ~~~~~ 238 (289)
T cd00200 234 LASGS 238 (289)
T ss_pred EEEEc
Confidence 77765
No 46
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.91 E-value=2.4e-22 Score=198.10 Aligned_cols=230 Identities=13% Similarity=0.171 Sum_probs=193.3
Q ss_pred EeccccCcEEEEEEc-CCCCEEEEEeCCe-EEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCC
Q 037288 251 LVASFKCTVWTADFC-TNPSQAVIGTNLG-AAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKR 328 (513)
Q Consensus 251 ~~~~h~~~V~~~~~s-~~g~~l~s~s~~~-i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~ 328 (513)
.+-|..+.|.++.|- |+.+++|.+++.. ++++++.+..+.....|...|.+++...+|-+|++|+.|.++++|.+++.
T Consensus 318 ~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~ 397 (775)
T KOG0319|consen 318 QIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNN 397 (775)
T ss_pred hhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCC
Confidence 367888899999885 5778999888765 99999999988876779999999997678889999999999999998544
Q ss_pred cc--ccccccccccCcCeEEEeeCC----eEEEeE-------eecccCccccee--------EeecCCCceEEEEEcCCC
Q 037288 329 QR--GCSSRAGRRHRIPYSRLQRND----RVTNEQ-------WFELKANIWPSH--------TTFMPSSISCLQSLQLYD 387 (513)
Q Consensus 329 ~~--~~~~~~~~~h~~~v~~v~~~~----~~~s~~-------w~~~~~~~~~~~--------~~~~~~~v~~~~~~~~~~ 387 (513)
.. .. +....+|...|.+++++. .+++++ |++...+..... ...|...|.|+ +++|+.
T Consensus 398 ~~~~~~-~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~V-aia~nd 475 (775)
T KOG0319|consen 398 CSKSLC-VAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCV-AIAPND 475 (775)
T ss_pred cchhhh-hhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccce-EecCCC
Confidence 32 23 567889999999999976 566666 988773322111 12355677775 899999
Q ss_pred CEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeE
Q 037288 388 QYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPS 467 (513)
Q Consensus 388 ~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~ 467 (513)
.++||||+|.+.+||++. +.....++.||...+.+ +.|+|..+.++++|.|++|+||.+.+..++.++.+|.+.|.
T Consensus 476 kLiAT~SqDktaKiW~le--~~~l~~vLsGH~RGvw~--V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVl 551 (775)
T KOG0319|consen 476 KLIATGSQDKTAKIWDLE--QLRLLGVLSGHTRGVWC--VSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVL 551 (775)
T ss_pred ceEEecccccceeeeccc--CceEEEEeeCCccceEE--EEeccccceeEeccCCceEEEEEeccceeeeeecCccceeE
Confidence 999999999999999997 66688999999999877 99999999999999999999999999999999999999999
Q ss_pred EEEEcCCCceEEeeCCCee
Q 037288 468 AVCWRTQRSMGPQIEGKIH 486 (513)
Q Consensus 468 ~v~~~p~~~~~~t~~~~~~ 486 (513)
.+.|-.++..+++++.|--
T Consensus 552 ra~F~~~~~qliS~~adGl 570 (775)
T KOG0319|consen 552 RASFIRNGKQLISAGADGL 570 (775)
T ss_pred eeeeeeCCcEEEeccCCCc
Confidence 9999999888888877654
No 47
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.91 E-value=1.6e-22 Score=184.26 Aligned_cols=231 Identities=13% Similarity=0.136 Sum_probs=180.1
Q ss_pred eeEEeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEEe-eeCCCeEEEEEecCCcEEEEEeCCCeEEEEEC
Q 037288 248 TMHLVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWVC-RSKSDILAQQVIHSGNVVLCGFRNGAIVTVDV 325 (513)
Q Consensus 248 ~~~~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~~-~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~ 325 (513)
.+..+..|+..|.+++.+|+.+++++|+ |+...+|++.++.....+ .|+..|+++.|+.||.+||+|+.+|.|+||+.
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV 135 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence 4677999999999999999999999985 556899999999855444 48899999999999999999999999999999
Q ss_pred CCCccccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEec
Q 037288 326 RKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSM 395 (513)
Q Consensus 326 ~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~ 395 (513)
.++.... .+...-..+.=+.|+| .+++|+ |.+... ...+.+..+..-+..-.|.|+|+.++++..
T Consensus 136 stg~~~~---~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~--~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~ 210 (399)
T KOG0296|consen 136 STGGEQW---KLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ--ALCKVMSGHNSPCTCGEFIPDGKRILTGYD 210 (399)
T ss_pred ccCceEE---EeecccCceEEEEecccccEEEeecCCCcEEEEECCCc--ceeeEecCCCCCcccccccCCCceEEEEec
Confidence 9887644 5555566778888999 555665 555543 223344444433333477888999999999
Q ss_pred CCeEEEEecCCC--------------------------------------------------------------------
Q 037288 396 DGTVKLYDHRLT-------------------------------------------------------------------- 407 (513)
Q Consensus 396 dg~i~lwd~~~~-------------------------------------------------------------------- 407 (513)
||+|++||+...
T Consensus 211 dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve 290 (399)
T KOG0296|consen 211 DGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVE 290 (399)
T ss_pred CceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhh
Confidence 999999998642
Q ss_pred -------------------------CccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCC
Q 037288 408 -------------------------TRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFS 462 (513)
Q Consensus 408 -------------------------~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~ 462 (513)
....++..-.|...|+. +.|.+ ..+|++++.||.|+.||.++|+++.++.+|
T Consensus 291 ~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~--l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH 367 (399)
T KOG0296|consen 291 SIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTK--LKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGH 367 (399)
T ss_pred hcccccccchhhcccccceEEEEecccchhheeccCCCceEE--EEEcC-cchheeeccCceEEeeeccccceEEEEecC
Confidence 00011222235555544 67766 578999999999999999999999999999
Q ss_pred CCCeEEEEEcCCCceEEeeCCCee
Q 037288 463 NSVPSAVCWRTQRSMGPQIEGKIH 486 (513)
Q Consensus 463 ~~~v~~v~~~p~~~~~~t~~~~~~ 486 (513)
...|.+++.+|+..+++|.+.|-.
T Consensus 368 ~~~Il~f~ls~~~~~vvT~s~D~~ 391 (399)
T KOG0296|consen 368 QMGILDFALSPQKRLVVTVSDDNT 391 (399)
T ss_pred chheeEEEEcCCCcEEEEecCCCe
Confidence 999999999999888888877744
No 48
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.3e-23 Score=203.05 Aligned_cols=227 Identities=15% Similarity=0.098 Sum_probs=195.3
Q ss_pred eccccCcEEEEEEcCCCCEEEEE-eCCeEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCc
Q 037288 252 VASFKCTVWTADFCTNPSQAVIG-TNLGAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQ 329 (513)
Q Consensus 252 ~~~h~~~V~~~~~s~~g~~l~s~-s~~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~ 329 (513)
+..|...|.++++||...++.++ -++.|.|||.++...+..+. ..-+|.+..|-+..+.+++|+.|..|+||+..+.+
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~e 88 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGE 88 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccce
Confidence 55688999999999999987776 67889999999999888887 66789999999999999999999999999999998
Q ss_pred cccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeEee-cCCCceEEEEEcCCCCEEEEEecCCe
Q 037288 330 RGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTF-MPSSISCLQSLQLYDQYFLASSMDGT 398 (513)
Q Consensus 330 ~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~s~dg~ 398 (513)
. +..+.+|.+.|++++.+| .+++++ |+-...- ....++. |...|.++...+.|.+.|++++.|++
T Consensus 89 k---V~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~w-a~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrT 164 (794)
T KOG0276|consen 89 K---VKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEW-ACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRT 164 (794)
T ss_pred e---eEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCce-eeeeEEcCcceEEEEEEecCCCccceeeeecccc
Confidence 7 559999999999999999 777777 5544332 2344443 45578888777778899999999999
Q ss_pred EEEEecCCCCccceEEecCCCCceeEEEEEEcC--CCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCc
Q 037288 399 VKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQ--SERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRS 476 (513)
Q Consensus 399 i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~--~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~ 476 (513)
|++|.+. +..+..+++||...|.+ +++-+ |..+|++|+.|.+|+|||.++..+++++.+|..-|..++|+|.-.
T Consensus 165 VKVWslg--s~~~nfTl~gHekGVN~--Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lp 240 (794)
T KOG0276|consen 165 VKVWSLG--SPHPNFTLEGHEKGVNC--VDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELP 240 (794)
T ss_pred EEEEEcC--CCCCceeeeccccCcce--EEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCc
Confidence 9999997 55699999999999999 55544 557999999999999999999999999999999999999999988
Q ss_pred eEEeeCCCee
Q 037288 477 MGPQIEGKIH 486 (513)
Q Consensus 477 ~~~t~~~~~~ 486 (513)
+++|++.|--
T Consensus 241 iiisgsEDGT 250 (794)
T KOG0276|consen 241 IIISGSEDGT 250 (794)
T ss_pred EEEEecCCcc
Confidence 8888877654
No 49
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=3.4e-23 Score=177.91 Aligned_cols=227 Identities=15% Similarity=0.166 Sum_probs=188.6
Q ss_pred eeEEeccccCcEEEEEEcCCCCEEEEE-eCCeEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEEC
Q 037288 248 TMHLVASFKCTVWTADFCTNPSQAVIG-TNLGAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDV 325 (513)
Q Consensus 248 ~~~~~~~h~~~V~~~~~s~~g~~l~s~-s~~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~ 325 (513)
....+..|+++|.++.|+-+|+|.+++ +|.+|++|+...|.++.++. |..+|..++.+.|...+++|+.|..|.+||+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 355688999999999999999998866 66779999999999999988 6667999999999999999999999999999
Q ss_pred CCCccccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeEeec-CCCceEEEEEcCCCCEEEEEe
Q 037288 326 RKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTFM-PSSISCLQSLQLYDQYFLASS 394 (513)
Q Consensus 326 ~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~s 394 (513)
.+++. ++.+.+|...|..+.|+. .+++|+ ||-+.....|.+.+.. .+.|.++.. .++.+++|+
T Consensus 89 ~TGkv---~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v---~~heIvaGS 162 (307)
T KOG0316|consen 89 NTGKV---DRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDV---AEHEIVAGS 162 (307)
T ss_pred ccCee---eeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEe---cccEEEeec
Confidence 99986 569999999999999998 666776 9988888877777654 456666532 578899999
Q ss_pred cCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCe--EEEEEc
Q 037288 395 MDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVP--SAVCWR 472 (513)
Q Consensus 395 ~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v--~~v~~~ 472 (513)
.||+++.||+| ......-+-+|. |++ ++|++|++.+++++.|+++++.|-.+|+++..+++|...- ..++++
T Consensus 163 ~DGtvRtydiR--~G~l~sDy~g~p--it~--vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~ 236 (307)
T KOG0316|consen 163 VDGTVRTYDIR--KGTLSSDYFGHP--ITS--VSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLN 236 (307)
T ss_pred cCCcEEEEEee--cceeehhhcCCc--cee--EEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeec
Confidence 99999999998 444555555554 667 8999999999999999999999999999999999886543 345666
Q ss_pred CCCceEEeeCCCee
Q 037288 473 TQRSMGPQIEGKIH 486 (513)
Q Consensus 473 p~~~~~~t~~~~~~ 486 (513)
.....+++++.|-.
T Consensus 237 qsdthV~sgSEDG~ 250 (307)
T KOG0316|consen 237 QSDTHVFSGSEDGK 250 (307)
T ss_pred ccceeEEeccCCce
Confidence 66666666555544
No 50
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.5e-23 Score=190.70 Aligned_cols=230 Identities=13% Similarity=0.091 Sum_probs=197.4
Q ss_pred eEEeccccCcEEEEEEcCCCCEEEEEeCC-eEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECC
Q 037288 249 MHLVASFKCTVWTADFCTNPSQAVIGTNL-GAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVR 326 (513)
Q Consensus 249 ~~~~~~h~~~V~~~~~s~~g~~l~s~s~~-~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~ 326 (513)
.+.+.+|..+|+.+-|+|+-.++++++++ +|++||..++++...++ |.+.|..|+|+..|.+|++++.|-.+++||..
T Consensus 101 ~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~ 180 (406)
T KOG0295|consen 101 VQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFD 180 (406)
T ss_pred hhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHH
Confidence 45588899999999999999999988765 59999999999866665 88889999999999999999999999999998
Q ss_pred CCccccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecC
Q 037288 327 KRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMD 396 (513)
Q Consensus 327 ~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~d 396 (513)
+.. .+ ++.+.+|...|.++.|-| .+++++ |+...+.. ..++..+.....++....||..+++++.|
T Consensus 181 ~~~-~c-~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~c--v~t~~~h~ewvr~v~v~~DGti~As~s~d 256 (406)
T KOG0295|consen 181 TFF-RC-IKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYC--VKTFPGHSEWVRMVRVNQDGTIIASCSND 256 (406)
T ss_pred HHH-HH-HHHhcCcccceeeEEEEecCCeeeecccccceeEEeccccee--EEeccCchHhEEEEEecCCeeEEEecCCC
Confidence 742 23 668999999999999998 777777 88877663 45666666677777888899999999999
Q ss_pred CeEEEEecCCCCccceEEecCCCCceeEEEEEEcCC---------------CCEEEEEeCCCcEEEEeCCCCeEEEEecC
Q 037288 397 GTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQS---------------ERFVMSGGEDCKLRIWSIRSGELVFEDKF 461 (513)
Q Consensus 397 g~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~---------------g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~ 461 (513)
.+|++|-+. ...+...+.+|.-.|.+ ++|-|. +.++.+++.|++|++||+.++.++.++.+
T Consensus 257 qtl~vW~~~--t~~~k~~lR~hEh~vEc--i~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~g 332 (406)
T KOG0295|consen 257 QTLRVWVVA--TKQCKAELREHEHPVEC--IAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVG 332 (406)
T ss_pred ceEEEEEec--cchhhhhhhccccceEE--EEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEec
Confidence 999999996 55577888999988888 455332 25899999999999999999999999999
Q ss_pred CCCCeEEEEEcCCCceEEeeCCCee
Q 037288 462 SNSVPSAVCWRTQRSMGPQIEGKIH 486 (513)
Q Consensus 462 ~~~~v~~v~~~p~~~~~~t~~~~~~ 486 (513)
|+..|+.++|+|.+.+++++..|--
T Consensus 333 hdnwVr~~af~p~Gkyi~ScaDDkt 357 (406)
T KOG0295|consen 333 HDNWVRGVAFSPGGKYILSCADDKT 357 (406)
T ss_pred ccceeeeeEEcCCCeEEEEEecCCc
Confidence 9999999999999999999887754
No 51
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.91 E-value=1.2e-24 Score=196.48 Aligned_cols=200 Identities=18% Similarity=0.260 Sum_probs=149.7
Q ss_pred cccccCceeEEeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCC
Q 037288 241 FSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNG 318 (513)
Q Consensus 241 ~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg 318 (513)
|......+...+.||++.|.|+.| +.+.+++|+ |.+|++||.++|+++.++- |...|..+.|+ ..++++++.|.
T Consensus 222 WD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDr 297 (499)
T KOG0281|consen 222 WDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDR 297 (499)
T ss_pred eccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCc
Confidence 333344456679999999999999 456888885 5669999999999887665 66779999997 57899999999
Q ss_pred eEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCe
Q 037288 319 AIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGT 398 (513)
Q Consensus 319 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~ 398 (513)
++.+||+..+..+.-...+.||..+|..++| +.+++++++.|.+
T Consensus 298 siaVWdm~sps~it~rrVLvGHrAaVNvVdf------------------------------------d~kyIVsASgDRT 341 (499)
T KOG0281|consen 298 SIAVWDMASPTDITLRRVLVGHRAAVNVVDF------------------------------------DDKYIVSASGDRT 341 (499)
T ss_pred eeEEEeccCchHHHHHHHHhhhhhheeeecc------------------------------------ccceEEEecCCce
Confidence 9999999988754424578999999999888 4557777777777
Q ss_pred EEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceE
Q 037288 399 VKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMG 478 (513)
Q Consensus 399 i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~ 478 (513)
|++|++. ....+.++.+|...+.| +. -.|+++++|+.|.+|++||+..|.+++.+.+|+..|.++.|.....+-
T Consensus 342 ikvW~~s--t~efvRtl~gHkRGIAC--lQ--Yr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~krIVS 415 (499)
T KOG0281|consen 342 IKVWSTS--TCEFVRTLNGHKRGIAC--LQ--YRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVS 415 (499)
T ss_pred EEEEecc--ceeeehhhhccccccee--hh--ccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecCceeee
Confidence 7777775 34477777777777655 32 347777777777777777777777777777777777777777665444
Q ss_pred EeeCCCee
Q 037288 479 PQIEGKIH 486 (513)
Q Consensus 479 ~t~~~~~~ 486 (513)
..-+++++
T Consensus 416 GaYDGkik 423 (499)
T KOG0281|consen 416 GAYDGKIK 423 (499)
T ss_pred ccccceEE
Confidence 44444443
No 52
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.91 E-value=9.8e-23 Score=207.12 Aligned_cols=196 Identities=15% Similarity=0.167 Sum_probs=165.3
Q ss_pred Eeccc-cCcEEEEEEcCCCCEEEEE-eCCeEEEEECCCCc--EEEEe-eeCCCeEEEEEecCCcEEEEEeCCCeEEEEEC
Q 037288 251 LVASF-KCTVWTADFCTNPSQAVIG-TNLGAAMVDMETGM--ASWVC-RSKSDILAQQVIHSGNVVLCGFRNGAIVTVDV 325 (513)
Q Consensus 251 ~~~~h-~~~V~~~~~s~~g~~l~s~-s~~~i~vwd~~~~~--~~~~~-~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~ 325 (513)
.+.+| ...|.++.|+++|+.++++ .++.+++|+..+.+ ....+ .|...|.+++|+|++.++++|+.|++|++||+
T Consensus 153 ~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~ 232 (456)
T KOG0266|consen 153 TLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDL 232 (456)
T ss_pred eecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeec
Confidence 34444 7899999999999999987 56669999997766 44443 58888999999999999999999999999999
Q ss_pred CCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecC
Q 037288 326 RKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHR 405 (513)
Q Consensus 326 ~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~ 405 (513)
..... . ++++.+|...|++++| +|+++++++|+.|++|++||++
T Consensus 233 ~~~~~-~-~~~l~gH~~~v~~~~f----------------------------------~p~g~~i~Sgs~D~tvriWd~~ 276 (456)
T KOG0266|consen 233 KDDGR-N-LKTLKGHSTYVTSVAF----------------------------------SPDGNLLVSGSDDGTVRIWDVR 276 (456)
T ss_pred cCCCe-E-EEEecCCCCceEEEEe----------------------------------cCCCCEEEEecCCCcEEEEecc
Confidence 44422 2 6789999999998655 5588999999999999999997
Q ss_pred CCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe--EEEEecCCCC--CeEEEEEcCCCceEEee
Q 037288 406 LTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGE--LVFEDKFSNS--VPSAVCWRTQRSMGPQI 481 (513)
Q Consensus 406 ~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~--~~~~~~~~~~--~v~~v~~~p~~~~~~t~ 481 (513)
...++..+.+|.+.|+. ++|++++++|++++.|+.|+|||+.+++ ++..+..+.. +++.++|+|++.++++.
T Consensus 277 --~~~~~~~l~~hs~~is~--~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~ 352 (456)
T KOG0266|consen 277 --TGECVRKLKGHSDGISG--LAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSA 352 (456)
T ss_pred --CCeEEEeeeccCCceEE--EEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEe
Confidence 45599999999999988 8999999999999999999999999999 5666665544 49999999998887777
Q ss_pred CCCee
Q 037288 482 EGKIH 486 (513)
Q Consensus 482 ~~~~~ 486 (513)
..|-.
T Consensus 353 ~~d~~ 357 (456)
T KOG0266|consen 353 SLDRT 357 (456)
T ss_pred cCCCe
Confidence 77733
No 53
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.91 E-value=4.5e-23 Score=183.27 Aligned_cols=197 Identities=18% Similarity=0.264 Sum_probs=166.6
Q ss_pred eEEeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCC-cEEEEe-eeCCCeEEEEEecCCcEEEEEeCCCeEEEEEC
Q 037288 249 MHLVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETG-MASWVC-RSKSDILAQQVIHSGNVVLCGFRNGAIVTVDV 325 (513)
Q Consensus 249 ~~~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~-~~~~~~-~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~ 325 (513)
+..+.+|++.|+.+.|+|+|.+||+|+ |..|.+|++... +..+.+ .|.++|+.+.|.+|++.|++++.|.+|+.||.
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~ 119 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDA 119 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEec
Confidence 455889999999999999999999885 555999996533 233333 48899999999999999999999999999999
Q ss_pred CCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecC
Q 037288 326 RKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHR 405 (513)
Q Consensus 326 ~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~ 405 (513)
++++. .+.+.+|..-|.+++-. .....++.+++.|+++++||+|
T Consensus 120 ~tG~~---~rk~k~h~~~vNs~~p~---------------------------------rrg~~lv~SgsdD~t~kl~D~R 163 (338)
T KOG0265|consen 120 ETGKR---IRKHKGHTSFVNSLDPS---------------------------------RRGPQLVCSGSDDGTLKLWDIR 163 (338)
T ss_pred cccee---eehhccccceeeecCcc---------------------------------ccCCeEEEecCCCceEEEEeec
Confidence 99987 44889998888775421 1245677889999999999999
Q ss_pred CCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCCe
Q 037288 406 LTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKI 485 (513)
Q Consensus 406 ~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~ 485 (513)
++.++++++.. -.+ .++.|..++..+.+|+-|+.|++||++.++.++.+.+|..+|+.+..+|++..+.+.+.|-
T Consensus 164 --~k~~~~t~~~k-yql--tAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~ 238 (338)
T KOG0265|consen 164 --KKEAIKTFENK-YQL--TAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDN 238 (338)
T ss_pred --ccchhhccccc-eeE--EEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccc
Confidence 77788877532 223 4489999999999999999999999999999999999999999999999999999999887
Q ss_pred e
Q 037288 486 H 486 (513)
Q Consensus 486 ~ 486 (513)
.
T Consensus 239 t 239 (338)
T KOG0265|consen 239 T 239 (338)
T ss_pred e
Confidence 6
No 54
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.91 E-value=4.2e-22 Score=173.80 Aligned_cols=244 Identities=15% Similarity=0.159 Sum_probs=186.9
Q ss_pred CCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcC-CCCEEEEE-eCCeEEEEECCCCcEEEEeeeCCCe
Q 037288 222 TGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCT-NPSQAVIG-TNLGAAMVDMETGMASWVCRSKSDI 299 (513)
Q Consensus 222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~-~g~~l~s~-s~~~i~vwd~~~~~~~~~~~~~~~V 299 (513)
.++.+.+|+++-..-. .-....+|.+.|-.++|+| +..+++++ +|++|++||++++++.........=
T Consensus 40 ~dktv~v~n~e~~r~~----------~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~en 109 (313)
T KOG1407|consen 40 FDKTVSVWNLERDRFR----------KELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGEN 109 (313)
T ss_pred cCCceEEEEecchhhh----------hhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcc
Confidence 4556666666633111 1233789999999999998 45566655 6677999999999999888877777
Q ss_pred EEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCC----eEEEeE----eecccCcccceeEe
Q 037288 300 LAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND----RVTNEQ----WFELKANIWPSHTT 371 (513)
Q Consensus 300 ~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~----~~~s~~----w~~~~~~~~~~~~~ 371 (513)
.-+.|+|+|.+++.|+.|..|...|.++.+... -......+..+.|+. .+++.+ -.+.-..+++...+
T Consensus 110 i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~----~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si 185 (313)
T KOG1407|consen 110 INITWSPDGEYIAVGNKDDRITFIDARTYKIVN----EEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSI 185 (313)
T ss_pred eEEEEcCCCCEEEEecCcccEEEEEecccceee----hhcccceeeeeeecCCCCEEEEecCCceEEEEecccccccccc
Confidence 778999999999999999999999999876432 223344455666654 333322 11222355566666
Q ss_pred ec-CCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 037288 372 FM-PSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSI 450 (513)
Q Consensus 372 ~~-~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~ 450 (513)
.. +....| +.|+|+|++||+|+.|-.+.+||+. +.-+++.+..+.-+|.. ++|+-||++||+|++|-.|-|=++
T Consensus 186 ~AH~snCic-I~f~p~GryfA~GsADAlvSLWD~~--ELiC~R~isRldwpVRT--lSFS~dg~~lASaSEDh~IDIA~v 260 (313)
T KOG1407|consen 186 KAHPSNCIC-IEFDPDGRYFATGSADALVSLWDVD--ELICERCISRLDWPVRT--LSFSHDGRMLASASEDHFIDIAEV 260 (313)
T ss_pred ccCCcceEE-EEECCCCceEeeccccceeeccChh--HhhhheeeccccCceEE--EEeccCcceeeccCccceEEeEec
Confidence 54 444444 5899999999999999999999996 55589999989888866 899999999999999999999999
Q ss_pred CCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCCe
Q 037288 451 RSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKI 485 (513)
Q Consensus 451 ~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~ 485 (513)
.+|..+..+.. .++-..|+|+|...+||-...|-
T Consensus 261 etGd~~~eI~~-~~~t~tVAWHPk~~LLAyA~ddk 294 (313)
T KOG1407|consen 261 ETGDRVWEIPC-EGPTFTVAWHPKRPLLAYACDDK 294 (313)
T ss_pred ccCCeEEEeec-cCCceeEEecCCCceeeEEecCC
Confidence 99999999875 77899999999987776655543
No 55
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.91 E-value=6.6e-22 Score=215.76 Aligned_cols=225 Identities=13% Similarity=0.069 Sum_probs=182.9
Q ss_pred eccccCcEEEEEEcCCCCEEEEEeC-CeEEEEECCCC----c----EEEEeeeCCCeEEEEEecC-CcEEEEEeCCCeEE
Q 037288 252 VASFKCTVWTADFCTNPSQAVIGTN-LGAAMVDMETG----M----ASWVCRSKSDILAQQVIHS-GNVVLCGFRNGAIV 321 (513)
Q Consensus 252 ~~~h~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~----~----~~~~~~~~~~V~~l~~~~~-~~~l~sg~~dg~i~ 321 (513)
+..|...|.+++|+|+|+++|+|+. +.|+|||+.+. . ....+.+...|.+++|++. +.+|++++.||+|+
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~ 558 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQ 558 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEE
Confidence 5569999999999999999998864 56999997542 1 2233445677999999974 68999999999999
Q ss_pred EEECCCCccccccccccccCcCeEEEeeCC----eEEEeE-------eecccCcccceeEeecCCCceEEEEEcCCCCEE
Q 037288 322 TVDVRKRQRGCSSRAGRRHRIPYSRLQRND----RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYF 390 (513)
Q Consensus 322 iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~----~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 390 (513)
+||+.+++. +..+.+|...|.+++|+| .+++++ |+...+.. ...+.....+.++.+.++++.+|
T Consensus 559 lWd~~~~~~---~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~--~~~~~~~~~v~~v~~~~~~g~~l 633 (793)
T PLN00181 559 VWDVARSQL---VTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS--IGTIKTKANICCVQFPSESGRSL 633 (793)
T ss_pred EEECCCCeE---EEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE--EEEEecCCCeEEEEEeCCCCCEE
Confidence 999988765 457889999999999986 567776 99877653 33445556777776657789999
Q ss_pred EEEecCCeEEEEecCCCCcc-ceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCC------CeEEEEecCCC
Q 037288 391 LASSMDGTVKLYDHRLTTRG-AVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRS------GELVFEDKFSN 463 (513)
Q Consensus 391 ~s~s~dg~i~lwd~~~~~~~-~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~------~~~~~~~~~~~ 463 (513)
++|+.||.|++||++ ... ++..+.+|...|.. +.|. ++.+|++++.|++|++||+.. .+++..+.+|.
T Consensus 634 atgs~dg~I~iwD~~--~~~~~~~~~~~h~~~V~~--v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~ 708 (793)
T PLN00181 634 AFGSADHKVYYYDLR--NPKLPLCTMIGHSKTVSY--VRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHT 708 (793)
T ss_pred EEEeCCCeEEEEECC--CCCccceEecCCCCCEEE--EEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCC
Confidence 999999999999997 433 67788899998877 6675 678999999999999999974 36788889999
Q ss_pred CCeEEEEEcCCCceEEeeCCCee
Q 037288 464 SVPSAVCWRTQRSMGPQIEGKIH 486 (513)
Q Consensus 464 ~~v~~v~~~p~~~~~~t~~~~~~ 486 (513)
..+..++|+|++.++++++.|-.
T Consensus 709 ~~i~~v~~s~~~~~lasgs~D~~ 731 (793)
T PLN00181 709 NVKNFVGLSVSDGYIATGSETNE 731 (793)
T ss_pred CCeeEEEEcCCCCEEEEEeCCCE
Confidence 99999999999888888876544
No 56
>PTZ00420 coronin; Provisional
Probab=99.91 E-value=1.1e-21 Score=199.71 Aligned_cols=217 Identities=14% Similarity=0.096 Sum_probs=155.1
Q ss_pred CCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEE-EEEe-CCeEEEEECCCCcEEEEeeeCCC
Q 037288 221 TTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQA-VIGT-NLGAAMVDMETGMASWVCRSKSD 298 (513)
Q Consensus 221 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l-~s~s-~~~i~vwd~~~~~~~~~~~~~~~ 298 (513)
..+|.+.+|++.+...... .. ...+..+.+|...|.+++|+|++..+ ++++ |+.|+|||+.+++....+.+...
T Consensus 94 S~DgtIrIWDi~t~~~~~~--~i--~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~ 169 (568)
T PTZ00420 94 SEDLTIRVWEIPHNDESVK--EI--KDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKK 169 (568)
T ss_pred eCCCeEEEEECCCCCcccc--cc--ccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCc
Confidence 3678889998864322100 00 11244578999999999999998754 5654 66799999999987777777788
Q ss_pred eEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCce
Q 037288 299 ILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSIS 378 (513)
Q Consensus 299 V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~ 378 (513)
|.+++|+|+|.+|++++.|+.|++||++++.. +..+.+|.+.+....+
T Consensus 170 V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~---i~tl~gH~g~~~s~~v----------------------------- 217 (568)
T PTZ00420 170 LSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEI---ASSFHIHDGGKNTKNI----------------------------- 217 (568)
T ss_pred EEEEEECCCCCEEEEEecCCEEEEEECCCCcE---EEEEecccCCceeEEE-----------------------------
Confidence 99999999999999999999999999998875 3467788776544222
Q ss_pred EEEEEcCCCCEEEEEecCC----eEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe
Q 037288 379 CLQSLQLYDQYFLASSMDG----TVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGE 454 (513)
Q Consensus 379 ~~~~~~~~~~~l~s~s~dg----~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~ 454 (513)
.+..+++++.+|++++.|+ .|+|||++.. ..++..+..+...-..+.....++|.++++|+.|+.|++|++..+.
T Consensus 218 ~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~-~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 218 WIDGLGGDDNYILSTGFSKNNMREMKLWDLKNT-TSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS 296 (568)
T ss_pred EeeeEcCCCCEEEEEEcCCCCccEEEEEECCCC-CCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc
Confidence 1123567889999988774 7999999831 2355555433222111123334568889999999999999998775
Q ss_pred EEE--EecCCCCCeEEEEEcCCC
Q 037288 455 LVF--EDKFSNSVPSAVCWRTQR 475 (513)
Q Consensus 455 ~~~--~~~~~~~~v~~v~~~p~~ 475 (513)
... .+. +..++.+++|.|..
T Consensus 297 ~~~l~~~~-s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 297 IRKVNEYK-SCSPFRSFGFLPKQ 318 (568)
T ss_pred EEeecccc-cCCCccceEEcccc
Confidence 322 222 46778999999973
No 57
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.91 E-value=1.2e-22 Score=200.24 Aligned_cols=213 Identities=13% Similarity=0.181 Sum_probs=181.9
Q ss_pred CCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCC-----CcE-----
Q 037288 221 TTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMET-----GMA----- 289 (513)
Q Consensus 221 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~-----~~~----- 289 (513)
...|.+.++++.+... +.++.+|.+.||.++.+||+..+++|+ |.+|++||..- |..
T Consensus 431 ~k~Gel~vfdlaS~~l------------~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~ls 498 (888)
T KOG0306|consen 431 TKNGELQVFDLASASL------------VETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLS 498 (888)
T ss_pred ccCCceEEEEeehhhh------------hhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeee
Confidence 3578888887764433 345789999999999999999998875 66799998641 211
Q ss_pred ---EEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCccc
Q 037288 290 ---SWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIW 366 (513)
Q Consensus 290 ---~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~ 366 (513)
.+++.-...|.|++++|||.+|+++--|.+|+||-+++.+. .-.+.||.-||.+++
T Consensus 499 l~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKF---flsLYGHkLPV~smD------------------ 557 (888)
T KOG0306|consen 499 LKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKF---FLSLYGHKLPVLSMD------------------ 557 (888)
T ss_pred eccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceee---eeeecccccceeEEe------------------
Confidence 13344567899999999999999999999999999998876 448999999999965
Q ss_pred ceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEE
Q 037288 367 PSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLR 446 (513)
Q Consensus 367 ~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~ 446 (513)
++|++++++|||.|.+|++|-+. -..|-+++-+|.+.|.+ +.|-|+...++++|.|+.|+
T Consensus 558 ----------------IS~DSklivTgSADKnVKiWGLd--FGDCHKS~fAHdDSvm~--V~F~P~~~~FFt~gKD~kvK 617 (888)
T KOG0306|consen 558 ----------------ISPDSKLIVTGSADKNVKIWGLD--FGDCHKSFFAHDDSVMS--VQFLPKTHLFFTCGKDGKVK 617 (888)
T ss_pred ----------------ccCCcCeEEeccCCCceEEeccc--cchhhhhhhcccCceeE--EEEcccceeEEEecCcceEE
Confidence 45699999999999999999996 33388899999999877 88899999999999999999
Q ss_pred EEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288 447 IWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIH 486 (513)
Q Consensus 447 vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~ 486 (513)
-||-..-+.++.+.+|...|++++.+|++.++++++.|..
T Consensus 618 qWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~s 657 (888)
T KOG0306|consen 618 QWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKS 657 (888)
T ss_pred eechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCce
Confidence 9999999999999999999999999999999999999755
No 58
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.90 E-value=5.3e-23 Score=184.29 Aligned_cols=227 Identities=11% Similarity=0.114 Sum_probs=193.3
Q ss_pred eccccCcEEEEEEcCCCCEEEEEeC-CeEEEEECCCCcEEEEee--eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCC
Q 037288 252 VASFKCTVWTADFCTNPSQAVIGTN-LGAAMVDMETGMASWVCR--SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKR 328 (513)
Q Consensus 252 ~~~h~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~~~~~~~~--~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~ 328 (513)
+.-|..+|.|+.|+.|...+|+|+. +.|++|.+.+|.+++.+. |...|+|+.|+.|+..+++++.|.++++.-+.++
T Consensus 259 fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG 338 (508)
T KOG0275|consen 259 FMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSG 338 (508)
T ss_pred eeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccc
Confidence 4456789999999999999999975 559999999999988776 8888999999999999999999999999999999
Q ss_pred ccccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeE-eecCCCceEEEEEcCCCCEEEEEecCC
Q 037288 329 QRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHT-TFMPSSISCLQSLQLYDQYFLASSMDG 397 (513)
Q Consensus 329 ~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~s~s~dg 397 (513)
+. ++.+.+|...|+...|.+ .+++++ |+..+.++..... ....-++.++..++.+...++++...+
T Consensus 339 K~---LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsn 415 (508)
T KOG0275|consen 339 KC---LKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSN 415 (508)
T ss_pred hh---HHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCC
Confidence 87 669999999999999998 777776 8888777553322 223457888888888999999999999
Q ss_pred eEEEEecCCCCccceEEecC-CCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCc
Q 037288 398 TVKLYDHRLTTRGAVQSYEG-HVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRS 476 (513)
Q Consensus 398 ~i~lwd~~~~~~~~~~~~~~-h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~ 476 (513)
+|.+.++ +.+.+++|.. ....-..++++.+|.|.|+++.++|+.++.|++.+|++-.++..|+..|..++.+|...
T Consensus 416 tv~imn~---qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqN 492 (508)
T KOG0275|consen 416 TVYIMNM---QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQN 492 (508)
T ss_pred eEEEEec---cceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccc
Confidence 9999998 5778888853 22222345578899999999999999999999999999999999999999999999988
Q ss_pred eEEeeCCC
Q 037288 477 MGPQIEGK 484 (513)
Q Consensus 477 ~~~t~~~~ 484 (513)
++|+-+.|
T Consensus 493 llAsYsED 500 (508)
T KOG0275|consen 493 LLASYSED 500 (508)
T ss_pred hhhhhccc
Confidence 88776554
No 59
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=4.8e-23 Score=200.20 Aligned_cols=198 Identities=12% Similarity=0.089 Sum_probs=161.4
Q ss_pred EeccccCcEEEEEEcCCCCEEEEEeCC-eEEEEECCCC--cEEEEee-eCCCeEEEEE-ecCCcEEEEEeCCCeEEEEEC
Q 037288 251 LVASFKCTVWTADFCTNPSQAVIGTNL-GAAMVDMETG--MASWVCR-SKSDILAQQV-IHSGNVVLCGFRNGAIVTVDV 325 (513)
Q Consensus 251 ~~~~h~~~V~~~~~s~~g~~l~s~s~~-~i~vwd~~~~--~~~~~~~-~~~~V~~l~~-~~~~~~l~sg~~dg~i~iwd~ 325 (513)
.++.|.+.|+++....+++.|++++.+ +|++|+...+ -+..+++ |...|.|++. .++..++++||.|+.|++||+
T Consensus 68 sme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDi 147 (735)
T KOG0308|consen 68 SMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDI 147 (735)
T ss_pred hhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEc
Confidence 377899999999999999888877655 5999999877 3555555 7888999999 778899999999999999999
Q ss_pred CCCcc--cc-----cccccc-ccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCC
Q 037288 326 RKRQR--GC-----SSRAGR-RHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDG 397 (513)
Q Consensus 326 ~~~~~--~~-----~~~~~~-~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg 397 (513)
..+.. .. +...+. ++...|.++ +..+.|..|++|+..+
T Consensus 148 n~~~~~l~~s~n~~t~~sl~sG~k~siYSL----------------------------------A~N~t~t~ivsGgtek 193 (735)
T KOG0308|consen 148 NTGTATLVASFNNVTVNSLGSGPKDSIYSL----------------------------------AMNQTGTIIVSGGTEK 193 (735)
T ss_pred cCcchhhhhhccccccccCCCCCccceeee----------------------------------ecCCcceEEEecCccc
Confidence 97732 11 122222 555555553 4445778999999999
Q ss_pred eEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCce
Q 037288 398 TVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSM 477 (513)
Q Consensus 398 ~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~ 477 (513)
.+++||.| ....+..+.||+..|.+ +-.+.||..++++|.||+|++||+...+++.++..|...|+++.-+|+-..
T Consensus 194 ~lr~wDpr--t~~kimkLrGHTdNVr~--ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~ 269 (735)
T KOG0308|consen 194 DLRLWDPR--TCKKIMKLRGHTDNVRV--LLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTH 269 (735)
T ss_pred ceEEeccc--cccceeeeeccccceEE--EEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcce
Confidence 99999999 66688889999999988 778899999999999999999999999999999999989999999998666
Q ss_pred EEeeCCCee
Q 037288 478 GPQIEGKIH 486 (513)
Q Consensus 478 ~~t~~~~~~ 486 (513)
+-+++++-.
T Consensus 270 vYsG~rd~~ 278 (735)
T KOG0308|consen 270 VYSGGRDGN 278 (735)
T ss_pred EEecCCCCc
Confidence 666665544
No 60
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.90 E-value=1.7e-22 Score=180.13 Aligned_cols=205 Identities=15% Similarity=0.221 Sum_probs=160.3
Q ss_pred EEeccccCcEEEEEEcCCCCEEEEEeCC-eEEEEECCCC------------------cEE-EEeeeCCCeEEEEEecCCc
Q 037288 250 HLVASFKCTVWTADFCTNPSQAVIGTNL-GAAMVDMETG------------------MAS-WVCRSKSDILAQQVIHSGN 309 (513)
Q Consensus 250 ~~~~~h~~~V~~~~~s~~g~~l~s~s~~-~i~vwd~~~~------------------~~~-~~~~~~~~V~~l~~~~~~~ 309 (513)
..+..|+.++.+.+|++||.++|+|+-+ .|+|.|++.. ..+ .++.|..+|.++.|+|...
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET 185 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence 3478899999999999999999999755 5999998721 122 3345889999999999999
Q ss_pred EEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCC---eEEEeE-------eecccCccccee--EeecCCCc
Q 037288 310 VVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSH--TTFMPSSI 377 (513)
Q Consensus 310 ~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~--~~~~~~~v 377 (513)
+|++|++|++|++||+....... .........+|.++.|+| .++.|. ||+.+-+..... .-.|.+.|
T Consensus 186 ILiS~srD~tvKlFDfsK~saKr-A~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai 264 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSKTSAKR-AFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAI 264 (430)
T ss_pred eEEeccCCCeEEEEecccHHHHH-HHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccce
Confidence 99999999999999998765433 222333467899999999 555554 777766644222 12345566
Q ss_pred eEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEec-CCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE
Q 037288 378 SCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYE-GHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELV 456 (513)
Q Consensus 378 ~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~-~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~ 456 (513)
++ +.+++.+++.++|+.||.|++||-- +..|+.++. +|.+. ...+..|..+|++|++.|.|..|++|.+.++.++
T Consensus 265 ~~-V~Ys~t~~lYvTaSkDG~IklwDGV--S~rCv~t~~~AH~gs-evcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l 340 (430)
T KOG0640|consen 265 TQ-VRYSSTGSLYVTASKDGAIKLWDGV--SNRCVRTIGNAHGGS-EVCSAVFTKNGKYILSSGKDSTVKLWEISTGRML 340 (430)
T ss_pred eE-EEecCCccEEEEeccCCcEEeeccc--cHHHHHHHHhhcCCc-eeeeEEEccCCeEEeecCCcceeeeeeecCCceE
Confidence 66 4889999999999999999999975 566888885 56544 3445889999999999999999999999998877
Q ss_pred EEe
Q 037288 457 FED 459 (513)
Q Consensus 457 ~~~ 459 (513)
.++
T Consensus 341 ~~Y 343 (430)
T KOG0640|consen 341 KEY 343 (430)
T ss_pred EEE
Confidence 654
No 61
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.90 E-value=5.7e-23 Score=189.79 Aligned_cols=195 Identities=19% Similarity=0.210 Sum_probs=152.1
Q ss_pred eeEEeccccCcEEEEEEcCCCCEEEEEeC-CeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECC
Q 037288 248 TMHLVASFKCTVWTADFCTNPSQAVIGTN-LGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVR 326 (513)
Q Consensus 248 ~~~~~~~h~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~ 326 (513)
...++.+|++.|.++.|......+++|+. .+|++||+....+....-..+.+..|..+ ...+++|..|++|++||++
T Consensus 253 ~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~R 330 (459)
T KOG0288|consen 253 LRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIR 330 (459)
T ss_pred hhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEec--ceeeeecccccceEEEecc
Confidence 35679999999999999887766778864 56999999998887776666666766665 6789999999999999999
Q ss_pred CCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCC
Q 037288 327 KRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRL 406 (513)
Q Consensus 327 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~ 406 (513)
...... ..+ ..+.+++ +.+++++..+++++.|.++.++|+|
T Consensus 331 s~~~~~---sv~----------------------------------~gg~vtS-l~ls~~g~~lLsssRDdtl~viDlR- 371 (459)
T KOG0288|consen 331 SADKTR---SVP----------------------------------LGGRVTS-LDLSMDGLELLSSSRDDTLKVIDLR- 371 (459)
T ss_pred CCceee---Eee----------------------------------cCcceee-EeeccCCeEEeeecCCCceeeeecc-
Confidence 887533 222 2333344 3667799999999999999999998
Q ss_pred CCccceEEecCCCC--ceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCC--eEEEEEcCCCceEEeeC
Q 037288 407 TTRGAVQSYEGHVN--SHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSV--PSAVCWRTQRSMGPQIE 482 (513)
Q Consensus 407 ~~~~~~~~~~~h~~--~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~--v~~v~~~p~~~~~~t~~ 482 (513)
.....++|.+... ......+.|||++.|+++||.||.|+||++.++++...+....+. |++++|+|.+..+++++
T Consensus 372 -t~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsad 450 (459)
T KOG0288|consen 372 -TKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSAD 450 (459)
T ss_pred -cccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhccc
Confidence 5555555543211 111234889999999999999999999999999999988765554 99999999977777666
Q ss_pred CC
Q 037288 483 GK 484 (513)
Q Consensus 483 ~~ 484 (513)
.+
T Consensus 451 k~ 452 (459)
T KOG0288|consen 451 KQ 452 (459)
T ss_pred CC
Confidence 64
No 62
>PTZ00421 coronin; Provisional
Probab=99.90 E-value=2.7e-21 Score=196.03 Aligned_cols=216 Identities=11% Similarity=0.072 Sum_probs=162.6
Q ss_pred EeccccCcEEEEEEcC-CCCEEEEEeC-CeEEEEECCCCc-------EEEE-eeeCCCeEEEEEecCC-cEEEEEeCCCe
Q 037288 251 LVASFKCTVWTADFCT-NPSQAVIGTN-LGAAMVDMETGM-------ASWV-CRSKSDILAQQVIHSG-NVVLCGFRNGA 319 (513)
Q Consensus 251 ~~~~h~~~V~~~~~s~-~g~~l~s~s~-~~i~vwd~~~~~-------~~~~-~~~~~~V~~l~~~~~~-~~l~sg~~dg~ 319 (513)
.+.+|.+.|++++|+| ++.+|++|++ ++|++||+.++. .+.. ..|...|.+++|+|++ ++|++|+.|++
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 3789999999999999 8889998865 559999997652 2333 3488889999999986 79999999999
Q ss_pred EEEEECCCCccccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeEee-cCCCceEEEEEcCCCC
Q 037288 320 IVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTF-MPSSISCLQSLQLYDQ 388 (513)
Q Consensus 320 i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~ 388 (513)
|++||+.+++. +..+.+|...|.+++|++ .+++++ ||.+.++.. ..+. |.+.......+.+++.
T Consensus 150 VrIWDl~tg~~---~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v--~tl~~H~~~~~~~~~w~~~~~ 224 (493)
T PTZ00421 150 VNVWDVERGKA---VEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIV--SSVEAHASAKSQRCLWAKRKD 224 (493)
T ss_pred EEEEECCCCeE---EEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEE--EEEecCCCCcceEEEEcCCCC
Confidence 99999998765 447889999999999998 566666 998877643 2332 3333333345666777
Q ss_pred EEEEEe----cCCeEEEEecCCCCcc-ceEEecCCCCceeEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCeEEEEecC-
Q 037288 389 YFLASS----MDGTVKLYDHRLTTRG-AVQSYEGHVNSHTRIQLGVDQSERFVMSGG-EDCKLRIWSIRSGELVFEDKF- 461 (513)
Q Consensus 389 ~l~s~s----~dg~i~lwd~~~~~~~-~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~-~Dg~v~vwd~~~~~~~~~~~~- 461 (513)
.+++++ .|+.|++||++ ... ++.....+.... .....|++++++|++|+ .|+.|++||+.+++++.....
T Consensus 225 ~ivt~G~s~s~Dr~VklWDlr--~~~~p~~~~~~d~~~~-~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~ 301 (493)
T PTZ00421 225 LIITLGCSKSQQRQIMLWDTR--KMASPYSTVDLDQSSA-LFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYS 301 (493)
T ss_pred eEEEEecCCCCCCeEEEEeCC--CCCCceeEeccCCCCc-eEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeecc
Confidence 777654 47899999998 333 455444343322 22357899999999887 599999999999998877544
Q ss_pred CCCCeEEEEEcCC
Q 037288 462 SNSVPSAVCWRTQ 474 (513)
Q Consensus 462 ~~~~v~~v~~~p~ 474 (513)
+..++.+++|.|.
T Consensus 302 s~~~~~g~~~~pk 314 (493)
T PTZ00421 302 SVEPHKGLCMMPK 314 (493)
T ss_pred CCCCCcceEeccc
Confidence 3456888888886
No 63
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.1e-21 Score=196.60 Aligned_cols=242 Identities=10% Similarity=0.105 Sum_probs=183.0
Q ss_pred CCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeCCe-EEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeC
Q 037288 239 PNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNLG-AAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFR 316 (513)
Q Consensus 239 ~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~~-i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~ 316 (513)
++|......++.++.||-+-|..+.|++.-.++.+++|++ |+||+..++.++.++. |..-|+|.+|+|...++++++.
T Consensus 76 kVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSL 155 (1202)
T KOG0292|consen 76 KVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASL 155 (1202)
T ss_pred EEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecc
Confidence 3444445557788999999999999999999999998876 9999999999988876 6677999999999999999999
Q ss_pred CCeEEEEECCCCccc---c----------------------c-cccccccCcCeEEEeeCC---eEEEeE-------eec
Q 037288 317 NGAIVTVDVRKRQRG---C----------------------S-SRAGRRHRIPYSRLQRND---RVTNEQ-------WFE 360 (513)
Q Consensus 317 dg~i~iwd~~~~~~~---~----------------------~-~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~ 360 (513)
|.+|+|||+..-+.. + . -..+.||...|.-++|+| .+++|+ |..
T Consensus 156 DQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrm 235 (1202)
T KOG0292|consen 156 DQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRM 235 (1202)
T ss_pred cceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEe
Confidence 999999998532210 0 0 124678999999999999 788887 887
Q ss_pred ccCcccceeEe-ecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEE
Q 037288 361 LKANIWPSHTT-FMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSG 439 (513)
Q Consensus 361 ~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg 439 (513)
...+.+..-+. .|...|.++ .|+|..+++++.+.|++|++||+. ++..+++|....+...+ ++.+|..+++++|
T Consensus 236 netKaWEvDtcrgH~nnVssv-lfhp~q~lIlSnsEDksirVwDm~--kRt~v~tfrrendRFW~--laahP~lNLfAAg 310 (1202)
T KOG0292|consen 236 NETKAWEVDTCRGHYNNVSSV-LFHPHQDLILSNSEDKSIRVWDMT--KRTSVQTFRRENDRFWI--LAAHPELNLFAAG 310 (1202)
T ss_pred ccccceeehhhhcccCCcceE-EecCccceeEecCCCccEEEEecc--cccceeeeeccCCeEEE--EEecCCcceeeee
Confidence 77766644444 355667775 788899999999999999999997 66699999755555555 8889999866665
Q ss_pred eCCCcEEEEeCCCCe----------------EE-------------EEecCC---CCCeEEEEEcCC-CceEEeeCCCee
Q 037288 440 GEDCKLRIWSIRSGE----------------LV-------------FEDKFS---NSVPSAVCWRTQ-RSMGPQIEGKIH 486 (513)
Q Consensus 440 ~~Dg~v~vwd~~~~~----------------~~-------------~~~~~~---~~~v~~v~~~p~-~~~~~t~~~~~~ 486 (513)
- |+-+.||-+.... .+ ..++.. ..++.++.|+|. +.++++++.+..
T Consensus 311 H-DsGm~VFkleRErpa~~v~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~ 389 (1202)
T KOG0292|consen 311 H-DSGMIVFKLERERPAYAVNGNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNG 389 (1202)
T ss_pred c-CCceEEEEEcccCceEEEcCCEEEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCC
Confidence 4 5555566554111 11 112222 267889999998 778888644433
No 64
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.89 E-value=1.6e-21 Score=191.04 Aligned_cols=250 Identities=15% Similarity=0.208 Sum_probs=177.1
Q ss_pred CCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcC------------CCCEEEEEeCCeEEEEECCCCcE
Q 037288 222 TGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCT------------NPSQAVIGTNLGAAMVDMETGMA 289 (513)
Q Consensus 222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~------------~g~~l~s~s~~~i~vwd~~~~~~ 289 (513)
.+.++++|++.++..+-+ ......|...||++.--| .+.++.+.+|++|++||++.+..
T Consensus 344 ndhSlYvWDvrD~~kvgk---------~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctn 414 (1080)
T KOG1408|consen 344 NDHSLYVWDVRDVNKVGK---------CSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTN 414 (1080)
T ss_pred cCceEEEEeccccccccc---------eeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccc
Confidence 467899999987766544 344677888888887654 34455556788999999976310
Q ss_pred EEE--------------------------------------eeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccc
Q 037288 290 SWV--------------------------------------CRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRG 331 (513)
Q Consensus 290 ~~~--------------------------------------~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~ 331 (513)
-.+ +.....+.+++.+|+|++||+|..-|+++|||+.+.+..
T Consensus 415 n~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~ 494 (1080)
T KOG1408|consen 415 NQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYT 494 (1080)
T ss_pred cceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhh
Confidence 000 012235899999999999999999999999999766542
Q ss_pred cccccccccCcCeEEEeeCC------eEEEeE-------eecccC-----------------------------------
Q 037288 332 CSSRAGRRHRIPYSRLQRND------RVTNEQ-------WFELKA----------------------------------- 363 (513)
Q Consensus 332 ~~~~~~~~h~~~v~~v~~~~------~~~s~~-------w~~~~~----------------------------------- 363 (513)
. .+.+|...|.++.|+. .+++++ +|+...
T Consensus 495 ~---~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADk 571 (1080)
T KOG1408|consen 495 C---FMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADK 571 (1080)
T ss_pred h---heecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCch
Confidence 2 5566666666666654 122222 221111
Q ss_pred -------------cccceeEeec-CCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCc-eeEEEEE
Q 037288 364 -------------NIWPSHTTFM-PSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNS-HTRIQLG 428 (513)
Q Consensus 364 -------------~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~-v~~~~~~ 428 (513)
.+.+..+-.. ...+.. +...|..+++++++.|..|+|||+. ..+..+.|++..+. -..+.+.
T Consensus 572 simFr~~qk~~~g~~f~r~t~t~~ktTlYD-m~Vdp~~k~v~t~cQDrnirif~i~--sgKq~k~FKgs~~~eG~lIKv~ 648 (1080)
T KOG1408|consen 572 SIMFRVNQKASSGRLFPRHTQTLSKTTLYD-MAVDPTSKLVVTVCQDRNIRIFDIE--SGKQVKSFKGSRDHEGDLIKVI 648 (1080)
T ss_pred hhheehhccccCceeccccccccccceEEE-eeeCCCcceEEEEecccceEEEecc--ccceeeeecccccCCCceEEEE
Confidence 1111110000 111222 3567788899999999999999997 55588888753322 3346688
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288 429 VDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIH 486 (513)
Q Consensus 429 ~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~ 486 (513)
.+|.|-||++.+.|.++.++|..+|+++....+|...|+.+.|.++-..+++..+|-+
T Consensus 649 lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgC 706 (1080)
T KOG1408|consen 649 LDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGC 706 (1080)
T ss_pred ECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCce
Confidence 8999999999999999999999999999999999999999999999777777777766
No 65
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=5.2e-22 Score=187.32 Aligned_cols=222 Identities=13% Similarity=0.140 Sum_probs=179.6
Q ss_pred eccccCcEEEEEEcCCCCEEEEEeCCe-EEEEECCCCcEEEEe-eeCCCeEEEEEecCC-cEEEEEeCCCeEEEEECCCC
Q 037288 252 VASFKCTVWTADFCTNPSQAVIGTNLG-AAMVDMETGMASWVC-RSKSDILAQQVIHSG-NVVLCGFRNGAIVTVDVRKR 328 (513)
Q Consensus 252 ~~~h~~~V~~~~~s~~g~~l~s~s~~~-i~vwd~~~~~~~~~~-~~~~~V~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~ 328 (513)
+..+.+.|++++|..||+++|+|.+.+ |+|+|+.+...++.+ .|..+|..+.|+|++ .++++|+.|+.+++||+.+.
T Consensus 64 ~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a 143 (487)
T KOG0310|consen 64 FSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA 143 (487)
T ss_pred HHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc
Confidence 556778999999999999999997655 999997664444444 488999999999966 68889999999999999987
Q ss_pred ccccccccccccCcCeEEEeeCC----eEEEeE-------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCC
Q 037288 329 QRGCSSRAGRRHRIPYSRLQRND----RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDG 397 (513)
Q Consensus 329 ~~~~~~~~~~~h~~~v~~v~~~~----~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg 397 (513)
.. ...+.+|++.|++.+|+| .+++|+ ||.+... .....+.|..+|..++++ |.|..+++++. .
T Consensus 144 ~v---~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~-~~v~elnhg~pVe~vl~l-psgs~iasAgG-n 217 (487)
T KOG0310|consen 144 YV---QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT-SRVVELNHGCPVESVLAL-PSGSLIASAGG-N 217 (487)
T ss_pred EE---EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC-ceeEEecCCCceeeEEEc-CCCCEEEEcCC-C
Confidence 63 338999999999999999 578887 8887765 456777888899988665 57888888885 4
Q ss_pred eEEEEecCCCCcc-ceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCC-
Q 037288 398 TVKLYDHRLTTRG-AVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQR- 475 (513)
Q Consensus 398 ~i~lwd~~~~~~~-~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~- 475 (513)
.|++||+- ..+ .+..+..|...|+| +.+..++..|++||.|+.|++||+.+.+.++.+.. .++|.+++.+|+.
T Consensus 218 ~vkVWDl~--~G~qll~~~~~H~KtVTc--L~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~-~~pvLsiavs~dd~ 292 (487)
T KOG0310|consen 218 SVKVWDLT--TGGQLLTSMFNHNKTVTC--LRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY-PGPVLSIAVSPDDQ 292 (487)
T ss_pred eEEEEEec--CCceehhhhhcccceEEE--EEeecCCceEeecccccceEEEEccceEEEEeeec-ccceeeEEecCCCc
Confidence 89999995 333 44445559999999 66667899999999999999999999999999887 5689999999984
Q ss_pred ceEEeeCCC
Q 037288 476 SMGPQIEGK 484 (513)
Q Consensus 476 ~~~~t~~~~ 484 (513)
.+++.-+.+
T Consensus 293 t~viGmsnG 301 (487)
T KOG0310|consen 293 TVVIGMSNG 301 (487)
T ss_pred eEEEecccc
Confidence 444444433
No 66
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.89 E-value=8.9e-22 Score=180.17 Aligned_cols=167 Identities=19% Similarity=0.200 Sum_probs=144.2
Q ss_pred CceeEEeccccCcEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEEC
Q 037288 246 RSTMHLVASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDV 325 (513)
Q Consensus 246 ~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~ 325 (513)
+..+.++.||+.+|.++.|++.+..+.++-|.+|+.||++++..+..+......+|++.+|..++|++|+.|..+++||.
T Consensus 250 r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DP 329 (423)
T KOG0313|consen 250 RTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDP 329 (423)
T ss_pred cCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCC
Confidence 34688999999999999999855455455677899999999999988888889999999999999999999999999999
Q ss_pred CCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecC
Q 037288 326 RKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHR 405 (513)
Q Consensus 326 ~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~ 405 (513)
|++........+.+|...|.++.|+| .+..+|++|+.|+++++||+|
T Consensus 330 R~~~gs~v~~s~~gH~nwVssvkwsp---------------------------------~~~~~~~S~S~D~t~klWDvR 376 (423)
T KOG0313|consen 330 RTGDGSVVSQSLIGHKNWVSSVKWSP---------------------------------TNEFQLVSGSYDNTVKLWDVR 376 (423)
T ss_pred CCCCCceeEEeeecchhhhhheecCC---------------------------------CCceEEEEEecCCeEEEEEec
Confidence 99876554568999999999987765 467889999999999999999
Q ss_pred CCCcc-ceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 037288 406 LTTRG-AVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSI 450 (513)
Q Consensus 406 ~~~~~-~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~ 450 (513)
... ++..+.+|.+.|.+ +.|. ++..|++||.|++|+|+.-
T Consensus 377 --S~k~plydI~~h~DKvl~--vdW~-~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 377 --STKAPLYDIAGHNDKVLS--VDWN-EGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred --cCCCcceeeccCCceEEE--Eecc-CCceEEeccCcceEEEecc
Confidence 555 99999999988755 7775 4568999999999999864
No 67
>PTZ00420 coronin; Provisional
Probab=99.89 E-value=1.1e-20 Score=192.42 Aligned_cols=199 Identities=9% Similarity=0.103 Sum_probs=146.5
Q ss_pred eeEEeccccCcEEEEEEcCC-CCEEEEEe-CCeEEEEECCCCc--------EE-EEeeeCCCeEEEEEecCCc-EEEEEe
Q 037288 248 TMHLVASFKCTVWTADFCTN-PSQAVIGT-NLGAAMVDMETGM--------AS-WVCRSKSDILAQQVIHSGN-VVLCGF 315 (513)
Q Consensus 248 ~~~~~~~h~~~V~~~~~s~~-g~~l~s~s-~~~i~vwd~~~~~--------~~-~~~~~~~~V~~l~~~~~~~-~l~sg~ 315 (513)
.+..+.+|...|.+++|+|+ +.+|++|+ |++|+|||+.++. ++ .+..|...|.+++|+|++. +|++|+
T Consensus 66 ~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS 145 (568)
T PTZ00420 66 PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSG 145 (568)
T ss_pred eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEe
Confidence 46678999999999999996 78898886 4569999997642 12 2234788899999999886 567999
Q ss_pred CCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEec
Q 037288 316 RNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSM 395 (513)
Q Consensus 316 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~ 395 (513)
.|++|++||+++++... .+. |...|.+ +.|+++|.+|++++.
T Consensus 146 ~DgtIrIWDl~tg~~~~---~i~-~~~~V~S----------------------------------lswspdG~lLat~s~ 187 (568)
T PTZ00420 146 FDSFVNIWDIENEKRAF---QIN-MPKKLSS----------------------------------LKWNIKGNLLSGTCV 187 (568)
T ss_pred CCCeEEEEECCCCcEEE---EEe-cCCcEEE----------------------------------EEECCCCCEEEEEec
Confidence 99999999999876422 221 2233433 356789999999999
Q ss_pred CCeEEEEecCCCCccceEEecCCCCceeEEE---EEEcCCCCEEEEEeCCC----cEEEEeCCC-CeEEEEecCC--CCC
Q 037288 396 DGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQ---LGVDQSERFVMSGGEDC----KLRIWSIRS-GELVFEDKFS--NSV 465 (513)
Q Consensus 396 dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~---~~~s~~g~~l~sg~~Dg----~v~vwd~~~-~~~~~~~~~~--~~~ 465 (513)
|+.|+|||++ ....+.++.+|.+.+.... ..|++++++|+++|.|+ .|+|||+++ ++++..+..+ .+.
T Consensus 188 D~~IrIwD~R--sg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~ 265 (568)
T PTZ00420 188 GKHMHIIDPR--KQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAP 265 (568)
T ss_pred CCEEEEEECC--CCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccc
Confidence 9999999998 5567888999987654322 34568999999988774 799999995 6666665432 233
Q ss_pred eEEEEEcCCCceEEeeCCCee
Q 037288 466 PSAVCWRTQRSMGPQIEGKIH 486 (513)
Q Consensus 466 v~~v~~~p~~~~~~t~~~~~~ 486 (513)
+......+++.+|+++.+|-.
T Consensus 266 L~p~~D~~tg~l~lsGkGD~t 286 (568)
T PTZ00420 266 LIPHYDESTGLIYLIGKGDGN 286 (568)
T ss_pred eEEeeeCCCCCEEEEEECCCe
Confidence 333344455787877766654
No 68
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.89 E-value=6e-23 Score=183.94 Aligned_cols=181 Identities=17% Similarity=0.199 Sum_probs=154.8
Q ss_pred ccccCcEEEEEEcCCCCEEEEEeCCe-EEEEECCCCcEEEEe---------eeCCCeEEEEEecCCcEEEEEeCCCeEEE
Q 037288 253 ASFKCTVWTADFCTNPSQAVIGTNLG-AAMVDMETGMASWVC---------RSKSDILAQQVIHSGNVVLCGFRNGAIVT 322 (513)
Q Consensus 253 ~~h~~~V~~~~~s~~g~~l~s~s~~~-i~vwd~~~~~~~~~~---------~~~~~V~~l~~~~~~~~l~sg~~dg~i~i 322 (513)
.+....+-|..|+|||++|++|+-++ |-+||..+|+...-+ -+..+|.|+.|+.|..++++|+.||.|++
T Consensus 210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKv 289 (508)
T KOG0275|consen 210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKV 289 (508)
T ss_pred cccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEE
Confidence 35567889999999999999997555 999999998743322 26778999999999999999999999999
Q ss_pred EECCCCcccccccccc-ccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEE
Q 037288 323 VDVRKRQRGCSSRAGR-RHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKL 401 (513)
Q Consensus 323 wd~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~l 401 (513)
|.++++.+ ++.+. +|...|+++ .|+.++..+++++.|.++++
T Consensus 290 Wri~tG~C---lRrFdrAHtkGvt~l----------------------------------~FSrD~SqiLS~sfD~tvRi 332 (508)
T KOG0275|consen 290 WRIETGQC---LRRFDRAHTKGVTCL----------------------------------SFSRDNSQILSASFDQTVRI 332 (508)
T ss_pred EEEecchH---HHHhhhhhccCeeEE----------------------------------EEccCcchhhcccccceEEE
Confidence 99999987 45776 788777774 45668999999999999999
Q ss_pred EecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecC--CCCCeEEEEEcCC
Q 037288 402 YDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKF--SNSVPSAVCWRTQ 474 (513)
Q Consensus 402 wd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~--~~~~v~~v~~~p~ 474 (513)
--+. +.++++.|.||...|+. ..|.+||.++++++.||+|++|+..+.+++.+++. .+.+|+.+-.-|.
T Consensus 333 HGlK--SGK~LKEfrGHsSyvn~--a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PK 403 (508)
T KOG0275|consen 333 HGLK--SGKCLKEFRGHSSYVNE--ATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPK 403 (508)
T ss_pred eccc--cchhHHHhcCccccccc--eEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCC
Confidence 9996 56699999999999887 88999999999999999999999999999998764 3556777776665
No 69
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.89 E-value=2e-21 Score=177.04 Aligned_cols=260 Identities=15% Similarity=0.207 Sum_probs=195.2
Q ss_pred eeeEEeccccCeEEEEEeecccccccceeEEeeeccccccccccccccCCCCCccccCcceeeecccceEEEecCCCCcc
Q 037288 123 TDVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNKTESSKAPEHIWRLNKASILMPSSVSCIKLFGKHPSC 202 (513)
Q Consensus 123 ~~~l~tg~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~s~i~si~~~~~~~~~ 202 (513)
..+|+||+.+|.|.+|.+.+.... +. -..+...+.-..|+|..
T Consensus 118 gtlLATGdmsG~v~v~~~stg~~~------~~----------~~~e~~dieWl~WHp~a--------------------- 160 (399)
T KOG0296|consen 118 GTLLATGDMSGKVLVFKVSTGGEQ------WK----------LDQEVEDIEWLKWHPRA--------------------- 160 (399)
T ss_pred ceEEEecCCCccEEEEEcccCceE------EE----------eecccCceEEEEecccc---------------------
Confidence 347999999999999999665422 11 11222334455666651
Q ss_pred ccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeC-CeEEE
Q 037288 203 ATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTN-LGAAM 281 (513)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~-~~i~v 281 (513)
+++ ..+..+|.+++|.+.+.. ....+.||+.++++=.|.|+|+.++++.+ ++|++
T Consensus 161 --------~il----lAG~~DGsvWmw~ip~~~------------~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~ 216 (399)
T KOG0296|consen 161 --------HIL----LAGSTDGSVWMWQIPSQA------------LCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIV 216 (399)
T ss_pred --------cEE----EeecCCCcEEEEECCCcc------------eeeEecCCCCCcccccccCCCceEEEEecCceEEE
Confidence 221 234589999999988541 24568899999999999999999999965 55999
Q ss_pred EECCCCcEEEEeee--CCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCcccccc-----ccccccCcCeEEEeeCC---
Q 037288 282 VDMETGMASWVCRS--KSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSS-----RAGRRHRIPYSRLQRND--- 351 (513)
Q Consensus 282 wd~~~~~~~~~~~~--~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~-----~~~~~h~~~v~~v~~~~--- 351 (513)
||..+++++..+.. .....++.++..+..++.|..++.+++-...+++.+... .....+...+.++.+.|
T Consensus 217 Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss 296 (399)
T KOG0296|consen 217 WNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSS 296 (399)
T ss_pred EecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhccccc
Confidence 99999998777662 334788999999999999999999988887766643200 11224555566666655
Q ss_pred ---eEEEeE-------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCc
Q 037288 352 ---RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNS 421 (513)
Q Consensus 352 ---~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~ 421 (513)
..+.|+ ||..... ..+...|..+|+.+.+.. ..+|++++.||.|+.||.| ...++.+|.||...
T Consensus 297 ~lpL~A~G~vdG~i~iyD~a~~~--~R~~c~he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaR--tG~l~~~y~GH~~~ 370 (399)
T KOG0296|consen 297 KLPLAACGSVDGTIAIYDLAAST--LRHICEHEDGVTKLKWLN--TDYLLTACANGKVRQWDAR--TGQLKFTYTGHQMG 370 (399)
T ss_pred ccchhhcccccceEEEEecccch--hheeccCCCceEEEEEcC--cchheeeccCceEEeeecc--ccceEEEEecCchh
Confidence 233333 8876655 346677888999987765 7889999999999999999 66699999999999
Q ss_pred eeEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 037288 422 HTRIQLGVDQSERFVMSGGEDCKLRIWSIR 451 (513)
Q Consensus 422 v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~ 451 (513)
|.. ++++|++++++++|.|++.+||++.
T Consensus 371 Il~--f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 371 ILD--FALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred eeE--EEEcCCCcEEEEecCCCeEEEEecC
Confidence 866 8899999999999999999999874
No 70
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.89 E-value=2e-21 Score=182.05 Aligned_cols=226 Identities=14% Similarity=0.176 Sum_probs=172.0
Q ss_pred CCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCC-EEEEE-eCCeEEEEECCCCcE--------E
Q 037288 221 TTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPS-QAVIG-TNLGAAMVDMETGMA--------S 290 (513)
Q Consensus 221 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~-~l~s~-s~~~i~vwd~~~~~~--------~ 290 (513)
...+.+.+|+.....+...... ....-..+.+|...-++++|++... .|++| .|.+|.+||+..... .
T Consensus 144 t~~~dv~Vfd~tk~~s~~~~~~--~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~ 221 (422)
T KOG0264|consen 144 TSSGDVYVFDYTKHPSKPKASG--ECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKT 221 (422)
T ss_pred CCCCCEEEEEeccCCCcccccc--cCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceE
Confidence 4566777777665544432211 2233467999999889999998443 44455 555699999975432 2
Q ss_pred EEeeeCCCeEEEEEecCC-cEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCccccee
Q 037288 291 WVCRSKSDILAQQVIHSG-NVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSH 369 (513)
Q Consensus 291 ~~~~~~~~V~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~ 369 (513)
.+..|.+.|..++|++-. .++++.+.|+.+.|||+|+....+ .....+|..+|.+++|+|
T Consensus 222 ~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~-~~~~~ah~~~vn~~~fnp------------------ 282 (422)
T KOG0264|consen 222 IFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKP-SHSVKAHSAEVNCVAFNP------------------ 282 (422)
T ss_pred EeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCC-cccccccCCceeEEEeCC------------------
Confidence 333488889999999854 799999999999999999742222 557889999999988876
Q ss_pred EeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCC-CCEEEEEeCCCcEEEE
Q 037288 370 TTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQS-ERFVMSGGEDCKLRIW 448 (513)
Q Consensus 370 ~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~-g~~l~sg~~Dg~v~vw 448 (513)
.++..||+|+.|++|++||+|.. ..++.++.+|...|.. +.|+|+ ...|++++.|+.+.||
T Consensus 283 ---------------~~~~ilAT~S~D~tV~LwDlRnL-~~~lh~~e~H~dev~~--V~WSPh~etvLASSg~D~rl~vW 344 (422)
T KOG0264|consen 283 ---------------FNEFILATGSADKTVALWDLRNL-NKPLHTFEGHEDEVFQ--VEWSPHNETVLASSGTDRRLNVW 344 (422)
T ss_pred ---------------CCCceEEeccCCCcEEEeechhc-ccCceeccCCCcceEE--EEeCCCCCceeEecccCCcEEEE
Confidence 35889999999999999999942 2389999999999866 999996 5788999999999999
Q ss_pred eCCCC--------------eEEEEecCCCCCeEEEEEcCC-CceEEeeCCCe
Q 037288 449 SIRSG--------------ELVFEDKFSNSVPSAVCWRTQ-RSMGPQIEGKI 485 (513)
Q Consensus 449 d~~~~--------------~~~~~~~~~~~~v~~v~~~p~-~~~~~t~~~~~ 485 (513)
|+..- ++++.=.+|.+.|..+.|+|+ ..++++...|-
T Consensus 345 Dls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN 396 (422)
T KOG0264|consen 345 DLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDN 396 (422)
T ss_pred eccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCc
Confidence 99642 245556788899999999999 56677766663
No 71
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=8.8e-21 Score=168.90 Aligned_cols=228 Identities=11% Similarity=0.083 Sum_probs=167.4
Q ss_pred eccccCcEEEEEEcCCCCEEEEE-eCCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCc--EEEEEeCCCeEEEEECCCC
Q 037288 252 VASFKCTVWTADFCTNPSQAVIG-TNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGN--VVLCGFRNGAIVTVDVRKR 328 (513)
Q Consensus 252 ~~~h~~~V~~~~~s~~g~~l~s~-s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~--~l~sg~~dg~i~iwd~~~~ 328 (513)
...|.++|.+++|+.||..+++| .|+.+++||+.+++...+-.|..+|.++.|-+..+ .|++|+.|.+|+.||.|..
T Consensus 68 ~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~ 147 (347)
T KOG0647|consen 68 QQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSS 147 (347)
T ss_pred hhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCC
Confidence 45677999999999999988876 67789999999998888778999999999998765 8999999999999999987
Q ss_pred ccccccccccccCcCeEEEeeCC-eEEEeE-------eecccCcc-cceeEeecCCCceEEEEEcCCCCEEEEEecCCeE
Q 037288 329 QRGCSSRAGRRHRIPYSRLQRND-RVTNEQ-------WFELKANI-WPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTV 399 (513)
Q Consensus 329 ~~~~~~~~~~~h~~~v~~v~~~~-~~~s~~-------w~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i 399 (513)
.... ...|+ +.+.+++.-. .++.+. +.+..+.. .....-...-.+.|+.+|. +...++.|+-+|.+
T Consensus 148 ~pv~-t~~LP---eRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~-d~~~~alGsiEGrv 222 (347)
T KOG0647|consen 148 NPVA-TLQLP---ERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQ-DKDGFALGSIEGRV 222 (347)
T ss_pred Ceee-eeecc---ceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEe-cCCceEeeeecceE
Confidence 7644 12222 3344544433 222221 44433221 1111222344567776665 56666999999999
Q ss_pred EEEecCCCCccceEEecCCCC------ceeE-EEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEc
Q 037288 400 KLYDHRLTTRGAVQSYEGHVN------SHTR-IQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWR 472 (513)
Q Consensus 400 ~lwd~~~~~~~~~~~~~~h~~------~v~~-~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~ 472 (513)
-+..+.......-.+|+.|.. .|+. -.++|+|.-..|+++|.||+..+||-.....+.+...|..+|++++|+
T Consensus 223 ~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn 302 (347)
T KOG0647|consen 223 AIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFN 302 (347)
T ss_pred EEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEec
Confidence 999887322234556776753 1333 348999998899999999999999999999999988999999999999
Q ss_pred CCCceEEeeCCC
Q 037288 473 TQRSMGPQIEGK 484 (513)
Q Consensus 473 p~~~~~~t~~~~ 484 (513)
.++.+||-.-+-
T Consensus 303 ~~G~ifaYA~gY 314 (347)
T KOG0647|consen 303 RNGSIFAYALGY 314 (347)
T ss_pred CCCCEEEEEeec
Confidence 998877755443
No 72
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=7.1e-22 Score=176.64 Aligned_cols=254 Identities=15% Similarity=0.180 Sum_probs=195.5
Q ss_pred eEEeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECC
Q 037288 249 MHLVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVR 326 (513)
Q Consensus 249 ~~~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~ 326 (513)
+..+.||.+.||.++.......+.+++ |.+.+||.+++|.++..+. |.+.|.+++|++.+.++++++.|++-.||...
T Consensus 141 vre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~a 220 (481)
T KOG0300|consen 141 VRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAA 220 (481)
T ss_pred hhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHh
Confidence 345889999999999987777777775 5569999999999988876 88889999999999999999999999999721
Q ss_pred ----CCcc---------------------------------ccccccccccCcCeEEEeeCC---eEEEeE-------ee
Q 037288 327 ----KRQR---------------------------------GCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WF 359 (513)
Q Consensus 327 ----~~~~---------------------------------~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~ 359 (513)
.++. ...+..+.+|...|.+.+|-. ++++++ ||
T Consensus 221 v~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwD 300 (481)
T KOG0300|consen 221 VNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWD 300 (481)
T ss_pred hcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeee
Confidence 0000 002556889999999999976 888888 66
Q ss_pred cccCcccceeEee-cCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCc-cceEEecCCCCceeEEEEEEcCCCCEEE
Q 037288 360 ELKANIWPSHTTF-MPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTR-GAVQSYEGHVNSHTRIQLGVDQSERFVM 437 (513)
Q Consensus 360 ~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~-~~~~~~~~h~~~v~~~~~~~s~~g~~l~ 437 (513)
+.++... ..+. |....+.+ +-+|..+++++++.|-+.++||+| .. ..+..|+||...|+. ..|..+. .++
T Consensus 301 VEtge~v--~~LtGHd~ELtHc-stHptQrLVvTsSrDtTFRLWDFR--eaI~sV~VFQGHtdtVTS--~vF~~dd-~vV 372 (481)
T KOG0300|consen 301 VETGEVV--NILTGHDSELTHC-STHPTQRLVVTSSRDTTFRLWDFR--EAIQSVAVFQGHTDTVTS--VVFNTDD-RVV 372 (481)
T ss_pred eccCcee--ccccCcchhcccc-ccCCcceEEEEeccCceeEeccch--hhcceeeeecccccceeE--EEEecCC-cee
Confidence 6666543 2222 33334443 567788999999999999999998 43 378899999999988 6776665 489
Q ss_pred EEeCCCcEEEEeCCCC-eEEEEecCCCCCeEEEEEcCCCceE-EeeCCCeeeeeccCCcccceeeeeeccceeeee
Q 037288 438 SGGEDCKLRIWSIRSG-ELVFEDKFSNSVPSAVCWRTQRSMG-PQIEGKIHEEFDLGQRHSWEAWIGTQEGLFRMN 511 (513)
Q Consensus 438 sg~~Dg~v~vwd~~~~-~~~~~~~~~~~~v~~v~~~p~~~~~-~t~~~~~~~~~~~~~~~~~~~~~gs~~g~~~~~ 511 (513)
+|+.|.+|+|||+++. .++.++.. +++++.++.+....++ +.-+....+.|++.....-...-.++.|+.||.
T Consensus 373 SgSDDrTvKvWdLrNMRsplATIRt-dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV 447 (481)
T KOG0300|consen 373 SGSDDRTVKVWDLRNMRSPLATIRT-DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMV 447 (481)
T ss_pred ecCCCceEEEeeeccccCcceeeec-CCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceee
Confidence 9999999999999985 46667665 6789999998886444 333333346677766666677778999999997
No 73
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.88 E-value=3.3e-23 Score=187.21 Aligned_cols=188 Identities=14% Similarity=0.159 Sum_probs=151.3
Q ss_pred CCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEE----EeeeCCCeEEEEEecCCcEEE
Q 037288 238 GPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASW----VCRSKSDILAQQVIHSGNVVL 312 (513)
Q Consensus 238 ~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~----~~~~~~~V~~l~~~~~~~~l~ 312 (513)
+++|.+....++.++.+|...|..+.|+ ..++++++ |.++.+||+.....+. +.+|...|..++|+ .++|+
T Consensus 259 vrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIV 334 (499)
T KOG0281|consen 259 VRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIV 334 (499)
T ss_pred EEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEE
Confidence 3445555555567789999999999996 34666665 5569999998775332 23488899999996 56999
Q ss_pred EEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEE
Q 037288 313 CGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLA 392 (513)
Q Consensus 313 sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 392 (513)
+++.|.+|++|++.+.+. ++++.+|...|.|+.+ .++++++
T Consensus 335 sASgDRTikvW~~st~ef---vRtl~gHkRGIAClQY------------------------------------r~rlvVS 375 (499)
T KOG0281|consen 335 SASGDRTIKVWSTSTCEF---VRTLNGHKRGIACLQY------------------------------------RDRLVVS 375 (499)
T ss_pred EecCCceEEEEeccceee---ehhhhcccccceehhc------------------------------------cCeEEEe
Confidence 999999999999999887 5589999888877544 6899999
Q ss_pred EecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe---------EEEEecCCC
Q 037288 393 SSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGE---------LVFEDKFSN 463 (513)
Q Consensus 393 ~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~---------~~~~~~~~~ 463 (513)
|+.|.+|++||+. ...++..++||..-|.+ +.|+ .+.+++|+.||+|+|||+.++. ++.++..|.
T Consensus 376 GSSDntIRlwdi~--~G~cLRvLeGHEeLvRc--iRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hs 449 (499)
T KOG0281|consen 376 GSSDNTIRLWDIE--CGACLRVLEGHEELVRC--IRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHS 449 (499)
T ss_pred cCCCceEEEEecc--ccHHHHHHhchHHhhhh--eeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhcc
Confidence 9999999999996 55599999999999988 5554 7789999999999999998765 334456678
Q ss_pred CCeEEEEEcCC
Q 037288 464 SVPSAVCWRTQ 474 (513)
Q Consensus 464 ~~v~~v~~~p~ 474 (513)
+.|..+.|...
T Consensus 450 gRVFrLQFD~f 460 (499)
T KOG0281|consen 450 GRVFRLQFDEF 460 (499)
T ss_pred ceeEEEeecce
Confidence 88999998755
No 74
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=8.7e-21 Score=185.78 Aligned_cols=245 Identities=13% Similarity=0.148 Sum_probs=190.1
Q ss_pred EEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEeee-CCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccc
Q 037288 259 VWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCRS-KSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAG 337 (513)
Q Consensus 259 V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~~-~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~ 337 (513)
.+-++|+ ..+.+|+|....|.+|+..+++...+... ...|+++.|+++|.+|++|..+|.|.|||..+.+.. ..+
T Consensus 180 ~nlldWs-s~n~laValg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~---~~~ 255 (484)
T KOG0305|consen 180 LNLLDWS-SANVLAVALGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKT---RTL 255 (484)
T ss_pred hhHhhcc-cCCeEEEEecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcccc---ccc
Confidence 3456777 56688888888899999999997766664 677999999999999999999999999999888764 478
Q ss_pred cc-cCcCeEEEeeCC-eEEEeE-------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCC
Q 037288 338 RR-HRIPYSRLQRND-RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTT 408 (513)
Q Consensus 338 ~~-h~~~v~~v~~~~-~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~ 408 (513)
.+ |...|.+++|+. .+.+|+ +|++..+.... ...++..-.|-..+++++.+||+|+.|+.+.|||.. .
T Consensus 256 ~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~-~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~--~ 332 (484)
T KOG0305|consen 256 RGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVS-TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGL--S 332 (484)
T ss_pred cCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhh-hhhcccceeeeeEECCCCCeeccCCCccceEeccCC--C
Confidence 88 999999999999 555555 77776665444 355455555556899999999999999999999996 6
Q ss_pred ccceEEecCCCCceeEEEEEEcCC-CCEEEEEeC--CCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCCe
Q 037288 409 RGAVQSYEGHVNSHTRIQLGVDQS-ERFVMSGGE--DCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKI 485 (513)
Q Consensus 409 ~~~~~~~~~h~~~v~~~~~~~s~~-g~~l~sg~~--Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~ 485 (513)
..+...+..|.+.|.. ++|+|- ..+||+|+. |++|++||+.+++.+..+.. .+-|+.+.|++...-+++..+.-
T Consensus 333 ~~p~~~~~~H~aAVKA--~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s 409 (484)
T KOG0305|consen 333 PEPKFTFTEHTAAVKA--LAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT-GSQVCSLIWSKKYKELLSTHGYS 409 (484)
T ss_pred ccccEEEeccceeeeE--eeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc-CCceeeEEEcCCCCEEEEecCCC
Confidence 6689999999999987 888884 568888654 99999999999999998765 56799999999964444444433
Q ss_pred ee---eeccCCcccceeeeeeccceeeeecC
Q 037288 486 HE---EFDLGQRHSWEAWIGTQEGLFRMNWS 513 (513)
Q Consensus 486 ~~---~~~~~~~~~~~~~~gs~~g~~~~~~~ 513 (513)
.. ...+........+.|+...+++|.||
T Consensus 410 ~n~i~lw~~ps~~~~~~l~gH~~RVl~la~S 440 (484)
T KOG0305|consen 410 ENQITLWKYPSMKLVAELLGHTSRVLYLALS 440 (484)
T ss_pred CCcEEEEeccccceeeeecCCcceeEEEEEC
Confidence 32 11222333334466777777766664
No 75
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.88 E-value=1.9e-21 Score=168.60 Aligned_cols=227 Identities=16% Similarity=0.191 Sum_probs=194.2
Q ss_pred eEEeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCC
Q 037288 249 MHLVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRK 327 (513)
Q Consensus 249 ~~~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~ 327 (513)
+-++.+|.++||...++.+....|+++ |-+.++||.-+|..+..+.|+.-|.+++|+.|.+.|++|+.+..++|||++.
T Consensus 52 igtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~ 131 (334)
T KOG0278|consen 52 IGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNR 131 (334)
T ss_pred EEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccC
Confidence 567999999999999999888888775 5568999999999999999999999999999999999999999999999987
Q ss_pred CccccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCC
Q 037288 328 RQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDG 397 (513)
Q Consensus 328 ~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg 397 (513)
.+.. ...+.+|.+.|..+-|.. .|++.. ||.+++.. .+.+..+..+.++ .++++|++|.++. .+
T Consensus 132 p~Ap--p~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~--v~sL~~~s~VtSl-Evs~dG~ilTia~-gs 205 (334)
T KOG0278|consen 132 PKAP--PKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTE--VQSLEFNSPVTSL-EVSQDGRILTIAY-GS 205 (334)
T ss_pred CCCC--chhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcE--EEEEecCCCCcce-eeccCCCEEEEec-Cc
Confidence 7643 568999999999999987 677755 99998875 4566777888886 7788888776654 67
Q ss_pred eEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEe-cCCCCCeEEEEEcCCCc
Q 037288 398 TVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFED-KFSNSVPSAVCWRTQRS 476 (513)
Q Consensus 398 ~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~-~~~~~~v~~v~~~p~~~ 476 (513)
.|++||.. ..+.++.++... .|.. .+.+|+..++++|++|..++.||..+++.+..+ ++|-++|.+|.|+|++.
T Consensus 206 sV~Fwdak--sf~~lKs~k~P~-nV~S--ASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE 280 (334)
T KOG0278|consen 206 SVKFWDAK--SFGLLKSYKMPC-NVES--ASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGE 280 (334)
T ss_pred eeEEeccc--cccceeeccCcc-cccc--ccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCc
Confidence 89999987 556787777443 3444 778899999999999999999999999999886 88999999999999999
Q ss_pred eEEeeCCCee
Q 037288 477 MGPQIEGKIH 486 (513)
Q Consensus 477 ~~~t~~~~~~ 486 (513)
++|+.+.|--
T Consensus 281 ~yAsGSEDGT 290 (334)
T KOG0278|consen 281 LYASGSEDGT 290 (334)
T ss_pred eeeccCCCce
Confidence 9888877755
No 76
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.88 E-value=3e-21 Score=168.98 Aligned_cols=233 Identities=15% Similarity=0.140 Sum_probs=185.0
Q ss_pred ceeEEeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeC-----CCeE
Q 037288 247 STMHLVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFR-----NGAI 320 (513)
Q Consensus 247 ~~~~~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~-----dg~i 320 (513)
+.+-++.||+++|||++..-+.+.+++|+ |.++++||+++|+++.......+|..+.|+++|++++.... .+.|
T Consensus 43 erlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v 122 (327)
T KOG0643|consen 43 ERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFV 122 (327)
T ss_pred ceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEE
Confidence 35778999999999999999999999995 56699999999999999999999999999999998877744 4899
Q ss_pred EEEECCCCc-----cccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeEeecCCCceEEEEEcC
Q 037288 321 VTVDVRKRQ-----RGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQL 385 (513)
Q Consensus 321 ~iwd~~~~~-----~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~ 385 (513)
.++|++... ..+ +..+..+...++..-|.| .+++|. ||++.+.......-.|...|..+ .+++
T Consensus 123 ~~fdi~~~~~~~~s~ep-~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~-q~s~ 200 (327)
T KOG0643|consen 123 SVFDIRDDSSDIDSEEP-YLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDL-QFSR 200 (327)
T ss_pred EEEEccCChhhhcccCc-eEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccc-cccC
Confidence 999998443 112 556778889999999999 677776 99999876555555566677776 7889
Q ss_pred CCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeC-CC-cEE------------EEeCC
Q 037288 386 YDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGE-DC-KLR------------IWSIR 451 (513)
Q Consensus 386 ~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~-Dg-~v~------------vwd~~ 451 (513)
+..+|++++.|.+-++||.+ ....+++|.. ..++.+ .+++|-..+++.||. +. .|. +|++-
T Consensus 201 d~T~FiT~s~Dttakl~D~~--tl~v~Kty~t-e~PvN~--aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i 275 (327)
T KOG0643|consen 201 DRTYFITGSKDTTAKLVDVR--TLEVLKTYTT-ERPVNT--AAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLI 275 (327)
T ss_pred CcceEEecccCccceeeecc--ceeeEEEeee-cccccc--eecccccceEEecCCceeeeeeeecccccchhhhHHHHH
Confidence 99999999999999999998 5558888873 445666 788897777666553 31 222 23333
Q ss_pred CCeEEEEecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288 452 SGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIH 486 (513)
Q Consensus 452 ~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~ 486 (513)
..+.+...++|-+||++|+|+|++..+++.+.|-.
T Consensus 276 ~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~ 310 (327)
T KOG0643|consen 276 FEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGY 310 (327)
T ss_pred HHHHhccccccccCcceeEECCCCcccccCCCCce
Confidence 33455667899999999999999998888887755
No 77
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.87 E-value=1.6e-20 Score=176.01 Aligned_cols=249 Identities=12% Similarity=0.143 Sum_probs=176.2
Q ss_pred eeeEEeccccCeEEEEEeecccccccceeEEeeeccccccccccccccCCCCCccccCcceeeecccceEEEecCCCCcc
Q 037288 123 TDVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNKTESSKAPEHIWRLNKASILMPSSVSCIKLFGKHPSC 202 (513)
Q Consensus 123 ~~~l~tg~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~s~i~si~~~~~~~~~ 202 (513)
.++++|++.+|.+-||+..+........-.+.|+.... ...+ +..+.+|++..
T Consensus 137 p~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~--gH~~----eg~glsWn~~~--------------------- 189 (422)
T KOG0264|consen 137 PNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLK--GHEK----EGYGLSWNRQQ--------------------- 189 (422)
T ss_pred CcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEE--eecc----ccccccccccc---------------------
Confidence 46888999999999999876543311110222211111 1111 25667886651
Q ss_pred ccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcC-CCCEEEEEeCCe-EE
Q 037288 203 ATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCT-NPSQAVIGTNLG-AA 280 (513)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~-~g~~l~s~s~~~-i~ 280 (513)
-..+.++..++.+.+|++......-+ . ......+.+|...|..++|++ +..++++++|++ +.
T Consensus 190 -----------~g~Lls~~~d~~i~lwdi~~~~~~~~---~--~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~ 253 (422)
T KOG0264|consen 190 -----------EGTLLSGSDDHTICLWDINAESKEDK---V--VDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLM 253 (422)
T ss_pred -----------ceeEeeccCCCcEEEEeccccccCCc---c--ccceEEeecCCcceehhhccccchhhheeecCCCeEE
Confidence 12223344566777777765443211 1 113456899999999999999 455777777665 89
Q ss_pred EEECCCC--cEEEEe-eeCCCeEEEEEec-CCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEe
Q 037288 281 MVDMETG--MASWVC-RSKSDILAQQVIH-SGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNE 356 (513)
Q Consensus 281 vwd~~~~--~~~~~~-~~~~~V~~l~~~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~ 356 (513)
|||++++ ++.... .|.++|.|++|+| ++.+||+|+.|++|.+||+|+... + +.++.+|...|..|.|+|
T Consensus 254 iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~-~-lh~~e~H~dev~~V~WSP----- 326 (422)
T KOG0264|consen 254 IWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK-P-LHTFEGHEDEVFQVEWSP----- 326 (422)
T ss_pred EEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc-C-ceeccCCCcceEEEEeCC-----
Confidence 9999953 333333 3888999999999 458999999999999999998865 3 778999999999988866
Q ss_pred EeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCc---------c---ceEEecCCCCceeE
Q 037288 357 QWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTR---------G---AVQSYEGHVNSHTR 424 (513)
Q Consensus 357 ~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~---------~---~~~~~~~h~~~v~~ 424 (513)
.....||+++.|+.+.+||+..... + .+..-.||...|..
T Consensus 327 ----------------------------h~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~D 378 (422)
T KOG0264|consen 327 ----------------------------HNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSD 378 (422)
T ss_pred ----------------------------CCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCccccccc
Confidence 3577899999999999999963211 1 24555789998866
Q ss_pred EEEEEcCCCCE-EEEEeCCCcEEEEeCC
Q 037288 425 IQLGVDQSERF-VMSGGEDCKLRIWSIR 451 (513)
Q Consensus 425 ~~~~~s~~g~~-l~sg~~Dg~v~vwd~~ 451 (513)
++|+|+..+ |+|.+.|+.+.||.+.
T Consensus 379 --fsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 379 --FSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred --ccCCCCCCeEEEEecCCceEEEeecc
Confidence 899998876 5678899999999875
No 78
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.87 E-value=4.6e-20 Score=161.66 Aligned_cols=224 Identities=12% Similarity=0.085 Sum_probs=180.7
Q ss_pred EeccccCcEEEEEEcCCCCEEEEEeCCe-EEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCC
Q 037288 251 LVASFKCTVWTADFCTNPSQAVIGTNLG-AAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKR 328 (513)
Q Consensus 251 ~~~~h~~~V~~~~~s~~g~~l~s~s~~~-i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~ 328 (513)
.++||..+++.+.++.+|.+|.+++.+. ..||-...|+.+-++. |.+.|+|++.+.+...+++|+.|.++++||+.++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 3889999999999999999999887554 8999888888887776 8899999999999999999999999999999999
Q ss_pred ccccccccccccCcCeEEEeeCC---eEEEeE------------eecccCc-----ccceeEeecCCCceEEEEEcCCCC
Q 037288 329 QRGCSSRAGRRHRIPYSRLQRND---RVTNEQ------------WFELKAN-----IWPSHTTFMPSSISCLQSLQLYDQ 388 (513)
Q Consensus 329 ~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~------------w~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~ 388 (513)
+... .-....+|..++|+. .++... ++++... -.|...+..++.-...+.|.|-++
T Consensus 85 k~la----~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~ 160 (327)
T KOG0643|consen 85 KQLA----TWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGE 160 (327)
T ss_pred cEEE----EeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCC
Confidence 8643 223456889999988 333332 5555322 123444545444444467899999
Q ss_pred EEEEEecCCeEEEEecCCCCcc-ceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeE
Q 037288 389 YFLASSMDGTVKLYDHRLTTRG-AVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPS 467 (513)
Q Consensus 389 ~l~s~s~dg~i~lwd~~~~~~~-~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~ 467 (513)
+|++|..||.|.+||++ ... .+..-+.|...++. +.+++|..++++|+.|.+-++||+.+-+++.++.. +.||+
T Consensus 161 ~ii~Ghe~G~is~~da~--~g~~~v~s~~~h~~~Ind--~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t-e~PvN 235 (327)
T KOG0643|consen 161 TIIAGHEDGSISIYDAR--TGKELVDSDEEHSSKIND--LQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT-ERPVN 235 (327)
T ss_pred EEEEecCCCcEEEEEcc--cCceeeechhhhcccccc--ccccCCcceEEecccCccceeeeccceeeEEEeee-ccccc
Confidence 99999999999999998 433 67777889888877 88999999999999999999999999999999876 67899
Q ss_pred EEEEcCCCceEEeeCC
Q 037288 468 AVCWRTQRSMGPQIEG 483 (513)
Q Consensus 468 ~v~~~p~~~~~~t~~~ 483 (513)
+.+++|....++-.++
T Consensus 236 ~aaisP~~d~VilgGG 251 (327)
T KOG0643|consen 236 TAAISPLLDHVILGGG 251 (327)
T ss_pred ceecccccceEEecCC
Confidence 9999997544444333
No 79
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.87 E-value=2.9e-20 Score=188.75 Aligned_cols=224 Identities=18% Similarity=0.272 Sum_probs=181.7
Q ss_pred eEE-eccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEEC
Q 037288 249 MHL-VASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDV 325 (513)
Q Consensus 249 ~~~-~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~ 325 (513)
+.. +.+|.+.|+++++..-+.++++|+ |.++++||..+|.+...+. |.+.|.++.. ...++++|+.|.+|++|++
T Consensus 241 i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~--~~~~~~sgs~D~tVkVW~v 318 (537)
T KOG0274|consen 241 ILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTI--DPFLLVSGSRDNTVKVWDV 318 (537)
T ss_pred EEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEc--cCceEeeccCCceEEEEec
Confidence 344 899999999999988788999997 6779999999999999888 7788888875 4577888999999999999
Q ss_pred CCCccccccccccccCcCeEEEeeCC-eEEEeE-------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCC
Q 037288 326 RKRQRGCSSRAGRRHRIPYSRLQRND-RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDG 397 (513)
Q Consensus 326 ~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg 397 (513)
.++.. +..+.+|..+|.++..+. .+++|+ |+...++......- |...|.++ .+... ..+++|+.|+
T Consensus 319 ~n~~~---l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~g-H~~~V~sl-~~~~~-~~~~Sgs~D~ 392 (537)
T KOG0274|consen 319 TNGAC---LNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSLSG-HTGRVYSL-IVDSE-NRLLSGSLDT 392 (537)
T ss_pred cCcce---EEEeccccccEEEEEecCCEEEEEecCceEEEEEhhhceeeeeecC-CcceEEEE-EecCc-ceEEeeeecc
Confidence 98876 457777999999999988 778877 88887765533333 67778886 44332 8999999999
Q ss_pred eEEEEecCCCCc-cceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecC-CCCCeEEEEEcCCC
Q 037288 398 TVKLYDHRLTTR-GAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKF-SNSVPSAVCWRTQR 475 (513)
Q Consensus 398 ~i~lwd~~~~~~-~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~-~~~~v~~v~~~p~~ 475 (513)
.|++||++ .. +++.++.+|..-+.. + ...+++|++++.|++|++||..++++++++.. |.+.|..+++....
T Consensus 393 ~IkvWdl~--~~~~c~~tl~~h~~~v~~--l--~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~~~~ 466 (537)
T KOG0274|consen 393 TIKVWDLR--TKRKCIHTLQGHTSLVSS--L--LLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALGKEE 466 (537)
T ss_pred ceEeecCC--chhhhhhhhcCCcccccc--c--ccccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecCcce
Confidence 99999998 55 699999999987754 3 34588999999999999999999999999988 56789999888333
Q ss_pred ceEEeeCCCee
Q 037288 476 SMGPQIEGKIH 486 (513)
Q Consensus 476 ~~~~t~~~~~~ 486 (513)
.+.++..+.+.
T Consensus 467 il~s~~~~~~~ 477 (537)
T KOG0274|consen 467 ILCSSDDGSVK 477 (537)
T ss_pred EEEEecCCeeE
Confidence 33333333333
No 80
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.87 E-value=4.1e-20 Score=166.02 Aligned_cols=226 Identities=15% Similarity=0.147 Sum_probs=170.0
Q ss_pred cCcEEEEEEc-------CCCCEEEEEeCCe-EEEEECCCCcEEEEee---eCCC---eEEEEEecCCcEEEEEeCCCeEE
Q 037288 256 KCTVWTADFC-------TNPSQAVIGTNLG-AAMVDMETGMASWVCR---SKSD---ILAQQVIHSGNVVLCGFRNGAIV 321 (513)
Q Consensus 256 ~~~V~~~~~s-------~~g~~l~s~s~~~-i~vwd~~~~~~~~~~~---~~~~---V~~l~~~~~~~~l~sg~~dg~i~ 321 (513)
...|+...|- |+..++|+.+.+. |++||..+|+....+. |... ..+++|+|||..|++| ....|+
T Consensus 104 g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcir 182 (406)
T KOG2919|consen 104 GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIR 182 (406)
T ss_pred CCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEE
Confidence 3578888875 5677888777665 9999999998776654 4443 4799999999999988 678999
Q ss_pred EEEC-CCCccccccccc-----cccCcCeEEEeeCC----eEEEeEeecccC-----cccceeE-eecCCCceEEEEEcC
Q 037288 322 TVDV-RKRQRGCSSRAG-----RRHRIPYSRLQRND----RVTNEQWFELKA-----NIWPSHT-TFMPSSISCLQSLQL 385 (513)
Q Consensus 322 iwd~-~~~~~~~~~~~~-----~~h~~~v~~v~~~~----~~~s~~w~~~~~-----~~~~~~~-~~~~~~v~~~~~~~~ 385 (513)
++|+ |.++... +... .+..+.|.+++|+| .+..|+|..+.+ ...|... ..+.+.|+.+ .|.+
T Consensus 183 vFdt~RpGr~c~-vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL-~~~e 260 (406)
T KOG2919|consen 183 VFDTSRPGRDCP-VYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHL-QWCE 260 (406)
T ss_pred EeeccCCCCCCc-chhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeE-Eecc
Confidence 9999 4444322 2222 33478899999999 444555322211 1122233 3456677776 6778
Q ss_pred CCCEEEEEec-CCeEEEEecCCCCcc-ceEEecCCCC-ceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CeEEEEecC
Q 037288 386 YDQYFLASSM-DGTVKLYDHRLTTRG-AVQSYEGHVN-SHTRIQLGVDQSERFVMSGGEDCKLRIWSIRS-GELVFEDKF 461 (513)
Q Consensus 386 ~~~~l~s~s~-dg~i~lwd~~~~~~~-~~~~~~~h~~-~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~-~~~~~~~~~ 461 (513)
+|+.|.+|+. |..|..||+| ... ++..+..|.. .-..+-++..|++++|++|+.||.|++||+++ +..+..+..
T Consensus 261 dGn~lfsGaRk~dkIl~WDiR--~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~ 338 (406)
T KOG2919|consen 261 DGNKLFSGARKDDKILCWDIR--YSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGN 338 (406)
T ss_pred CcCeecccccCCCeEEEEeeh--hccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccc
Confidence 9999999886 7899999999 444 7777887865 22234477789999999999999999999998 887888888
Q ss_pred CCCCeEEEEEcCCCceEEeeCCCee
Q 037288 462 SNSVPSAVCWRTQRSMGPQIEGKIH 486 (513)
Q Consensus 462 ~~~~v~~v~~~p~~~~~~t~~~~~~ 486 (513)
+...++.|+++|--.++||+++...
T Consensus 339 ~sd~vNgvslnP~mpilatssGqr~ 363 (406)
T KOG2919|consen 339 YSDTVNGVSLNPIMPILATSSGQRI 363 (406)
T ss_pred ccccccceecCcccceeeeccCcee
Confidence 8889999999999999999988766
No 81
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=9.3e-21 Score=177.98 Aligned_cols=231 Identities=16% Similarity=0.180 Sum_probs=186.5
Q ss_pred CCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEe
Q 037288 238 GPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGF 315 (513)
Q Consensus 238 ~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~ 315 (513)
..+|++.++..++...--.++|.|++-+|+|.+++.|+ .+.+++|.+.+|..+.++. |-..|+|+.|+-||.+|++|+
T Consensus 63 l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgs 142 (476)
T KOG0646|consen 63 LHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGS 142 (476)
T ss_pred ccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecC
Confidence 34455554433332333457899999999999999884 5669999999999877665 778899999999999999999
Q ss_pred CCCeEEEEECC-------CCccccccccccccCcCeEEEeeCC-----eEEEeE-------eecccCcccceeEeecCCC
Q 037288 316 RNGAIVTVDVR-------KRQRGCSSRAGRRHRIPYSRLQRND-----RVTNEQ-------WFELKANIWPSHTTFMPSS 376 (513)
Q Consensus 316 ~dg~i~iwd~~-------~~~~~~~~~~~~~h~~~v~~v~~~~-----~~~s~~-------w~~~~~~~~~~~~~~~~~~ 376 (513)
.||.|.+|++- +....+ +..+..|.-+|+.+...+ ++++.+ |++..+.+. ..+..+..
T Consensus 143 kDg~V~vW~l~~lv~a~~~~~~~p-~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LL--lti~fp~s 219 (476)
T KOG0646|consen 143 KDGAVLVWLLTDLVSADNDHSVKP-LHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLL--LTITFPSS 219 (476)
T ss_pred CCccEEEEEEEeecccccCCCccc-eeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceee--EEEecCCc
Confidence 99999999862 222233 678999999999988766 777777 999988754 44555677
Q ss_pred ceEEEEEcCCCCEEEEEecCCeEEEEecCCCC--------------ccceEEecCCCC--ceeEEEEEEcCCCCEEEEEe
Q 037288 377 ISCLQSLQLYDQYFLASSMDGTVKLYDHRLTT--------------RGAVQSYEGHVN--SHTRIQLGVDQSERFVMSGG 440 (513)
Q Consensus 377 v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~--------------~~~~~~~~~h~~--~v~~~~~~~s~~g~~l~sg~ 440 (513)
+.++ .++|.+..+.+|+.+|.|.+.++.... ...+..+.||.+ .|++ ++++-||..|++|+
T Consensus 220 i~av-~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITc--Lais~DgtlLlSGd 296 (476)
T KOG0646|consen 220 IKAV-ALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITC--LAISTDGTLLLSGD 296 (476)
T ss_pred ceeE-EEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeE--EEEecCccEEEeeC
Confidence 7775 889999999999999999998876332 114567889998 7877 77788899999999
Q ss_pred CCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCC
Q 037288 441 EDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQ 474 (513)
Q Consensus 441 ~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~ 474 (513)
.||.|+|||+.+.++++++....++|+.+.+.|-
T Consensus 297 ~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 297 EDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPL 330 (476)
T ss_pred CCCCEEEEecchHHHHHHHhhhccccceeEeecc
Confidence 9999999999999999998877889999999765
No 82
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=3.2e-19 Score=152.63 Aligned_cols=193 Identities=16% Similarity=0.179 Sum_probs=152.5
Q ss_pred eccccCcEEEEEEcCCCCEEEEEeCCe-EEEEECCCC------cEEEEeeeCCCeEEEEEecC----CcEEEEEeC-CCe
Q 037288 252 VASFKCTVWTADFCTNPSQAVIGTNLG-AAMVDMETG------MASWVCRSKSDILAQQVIHS----GNVVLCGFR-NGA 319 (513)
Q Consensus 252 ~~~h~~~V~~~~~s~~g~~l~s~s~~~-i~vwd~~~~------~~~~~~~~~~~V~~l~~~~~----~~~l~sg~~-dg~ 319 (513)
.+-|.+.|+|.+|+|+|.++++|+++. |++..++.. ..+.+--|.+.|..++|-.+ |.+|++++. |..
T Consensus 85 ~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~ 164 (350)
T KOG0641|consen 85 NKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCK 164 (350)
T ss_pred ccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcce
Confidence 456889999999999999999998765 877654432 23333448889999999754 357777653 666
Q ss_pred EEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeE
Q 037288 320 IVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTV 399 (513)
Q Consensus 320 i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i 399 (513)
|++-|...++. +..+.+|.+-|.++ ++-++-+|++|+.|.+|
T Consensus 165 iy~tdc~~g~~---~~a~sghtghilal-----------------------------------yswn~~m~~sgsqdkti 206 (350)
T KOG0641|consen 165 IYITDCGRGQG---FHALSGHTGHILAL-----------------------------------YSWNGAMFASGSQDKTI 206 (350)
T ss_pred EEEeecCCCCc---ceeecCCcccEEEE-----------------------------------EEecCcEEEccCCCceE
Confidence 77767766665 56888888877662 34478999999999999
Q ss_pred EEEecCCCCccceEEecC--CC-----CceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEc
Q 037288 400 KLYDHRLTTRGAVQSYEG--HV-----NSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWR 472 (513)
Q Consensus 400 ~lwd~~~~~~~~~~~~~~--h~-----~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~ 472 (513)
++||+| -..++.++.. |. ..|. .++++|.|++|++|-.|....+||++.+..++.+-.|.+.|+++.|+
T Consensus 207 rfwdlr--v~~~v~~l~~~~~~~glessava--av~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfs 282 (350)
T KOG0641|consen 207 RFWDLR--VNSCVNTLDNDFHDGGLESSAVA--AVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFS 282 (350)
T ss_pred EEEeee--ccceeeeccCcccCCCcccceeE--EEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeC
Confidence 999999 4446666531 22 2343 48899999999999999999999999999999999999999999999
Q ss_pred CCCceEEeeCCCee
Q 037288 473 TQRSMGPQIEGKIH 486 (513)
Q Consensus 473 p~~~~~~t~~~~~~ 486 (513)
|...++.|++-|..
T Consensus 283 p~a~yllt~syd~~ 296 (350)
T KOG0641|consen 283 PGAHYLLTCSYDMK 296 (350)
T ss_pred CCceEEEEecccce
Confidence 99988888887766
No 83
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.86 E-value=3.5e-20 Score=172.47 Aligned_cols=199 Identities=9% Similarity=0.192 Sum_probs=163.7
Q ss_pred eEEeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEE-eeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECC
Q 037288 249 MHLVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWV-CRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVR 326 (513)
Q Consensus 249 ~~~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~-~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~ 326 (513)
+..+.||...|+.+.++++...+++++ |..|+||.......... ..|..+|+.+..+|.|.+|++++.|++..+.|++
T Consensus 254 l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~ 333 (506)
T KOG0289|consen 254 LATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDIS 333 (506)
T ss_pred hhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEcc
Confidence 566899999999999999999888885 55599999876654443 3489999999999999999999999999999999
Q ss_pred CCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCC
Q 037288 327 KRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRL 406 (513)
Q Consensus 327 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~ 406 (513)
++.... ...-......+++ ..|+|||..|.+|+.||.|++||+.
T Consensus 334 ~g~~lt-~vs~~~s~v~~ts----------------------------------~~fHpDgLifgtgt~d~~vkiwdlk- 377 (506)
T KOG0289|consen 334 SGSQLT-VVSDETSDVEYTS----------------------------------AAFHPDGLIFGTGTPDGVVKIWDLK- 377 (506)
T ss_pred CCcEEE-EEeeccccceeEE----------------------------------eeEcCCceEEeccCCCceEEEEEcC-
Confidence 987532 0000001111222 4788999999999999999999996
Q ss_pred CCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCC-CCCeEEEEEcCCCceEEeeCCCe
Q 037288 407 TTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFS-NSVPSAVCWRTQRSMGPQIEGKI 485 (513)
Q Consensus 407 ~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~-~~~v~~v~~~p~~~~~~t~~~~~ 485 (513)
+...+..|.+|.++|.. +.|+.+|-||++++.|+.|++||++.-+...++... ...+.+++|.+.+.+++..+.++
T Consensus 378 -s~~~~a~Fpght~~vk~--i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l 454 (506)
T KOG0289|consen 378 -SQTNVAKFPGHTGPVKA--ISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDL 454 (506)
T ss_pred -CccccccCCCCCCceeE--EEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeeccee
Confidence 44488899999999988 899999999999999999999999998888776543 23699999999999998888887
Q ss_pred e
Q 037288 486 H 486 (513)
Q Consensus 486 ~ 486 (513)
.
T Consensus 455 ~ 455 (506)
T KOG0289|consen 455 Q 455 (506)
T ss_pred E
Confidence 6
No 84
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=2.8e-20 Score=160.98 Aligned_cols=216 Identities=11% Similarity=0.082 Sum_probs=159.9
Q ss_pred eEEeccccCcEEEEEEcC--CCCEEEEEe-CCeEEEEECCCCcEEEEe---eeCCCeEEEEEecCC--cEEEEEeCCCeE
Q 037288 249 MHLVASFKCTVWTADFCT--NPSQAVIGT-NLGAAMVDMETGMASWVC---RSKSDILAQQVIHSG--NVVLCGFRNGAI 320 (513)
Q Consensus 249 ~~~~~~h~~~V~~~~~s~--~g~~l~s~s-~~~i~vwd~~~~~~~~~~---~~~~~V~~l~~~~~~--~~l~sg~~dg~i 320 (513)
+.+|.||.++|+.++|.. -|.+||+++ |+.|.||.-+.++-.... .|.+.|++++|.|.+ -+|++|+.||.|
T Consensus 49 l~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~v 128 (299)
T KOG1332|consen 49 LAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKV 128 (299)
T ss_pred eeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcE
Confidence 345899999999999976 899999886 666999999888533322 278889999999864 799999999999
Q ss_pred EEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEE
Q 037288 321 VTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVK 400 (513)
Q Consensus 321 ~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~ 400 (513)
.|.+.+....-.+-+...+|...|+++.|.|..+.|. .+.+. .. ..-+.|++|+.|..|+
T Consensus 129 svl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~------------~~~~~-------~~-~~~krlvSgGcDn~Vk 188 (299)
T KOG1332|consen 129 SVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGS------------LVDQG-------PA-AKVKRLVSGGCDNLVK 188 (299)
T ss_pred EEEEEcCCCCccchhhhhccccccceeeecCcCCCcc------------ccccC-------cc-cccceeeccCCcccee
Confidence 9999987732222456789999999999977111110 00000 00 0135799999999999
Q ss_pred EEecCCCCccceEEecCCCCceeEEEEEEcCCC----CEEEEEeCCCcEEEEeCCCC--eE-EEEecCCCCCeEEEEEcC
Q 037288 401 LYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSE----RFVMSGGEDCKLRIWSIRSG--EL-VFEDKFSNSVPSAVCWRT 473 (513)
Q Consensus 401 lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g----~~l~sg~~Dg~v~vwd~~~~--~~-~~~~~~~~~~v~~v~~~p 473 (513)
||+........-.+|++|.+.|.. ++|.|.- .+|+++++||+|.||-.... +. ...+..-..++..+.|+.
T Consensus 189 iW~~~~~~w~~e~~l~~H~dwVRD--VAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~ 266 (299)
T KOG1332|consen 189 IWKFDSDSWKLERTLEGHKDWVRD--VAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSL 266 (299)
T ss_pred eeecCCcchhhhhhhhhcchhhhh--hhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEec
Confidence 999973222355569999999877 8888863 57999999999999976532 11 111233356799999999
Q ss_pred CCceEEeeCCCee
Q 037288 474 QRSMGPQIEGKIH 486 (513)
Q Consensus 474 ~~~~~~t~~~~~~ 486 (513)
.+.+|+-+++|..
T Consensus 267 sGn~LaVs~GdNk 279 (299)
T KOG1332|consen 267 SGNILAVSGGDNK 279 (299)
T ss_pred cccEEEEecCCcE
Confidence 9999999888866
No 85
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=2e-19 Score=161.14 Aligned_cols=251 Identities=13% Similarity=0.141 Sum_probs=181.5
Q ss_pred ceeeecccceEEEecCCCCccccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEE
Q 037288 182 ASILMPSSVSCIKLFGKHPSCATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWT 261 (513)
Q Consensus 182 ~~~~~~s~i~si~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 261 (513)
..-.+..+|+++.+++.... ++..+..+.+|++.... .+..+..|.+.|++
T Consensus 38 ~~~aH~~sitavAVs~~~~a-----------------SGssDetI~IYDm~k~~------------qlg~ll~Hagsita 88 (362)
T KOG0294|consen 38 AFSAHAGSITALAVSGPYVA-----------------SGSSDETIHIYDMRKRK------------QLGILLSHAGSITA 88 (362)
T ss_pred cccccccceeEEEecceeEe-----------------ccCCCCcEEEEeccchh------------hhcceeccccceEE
Confidence 34456677888888765533 23445566666665332 24558889999999
Q ss_pred EEEcCCCC--EEEEEeCCe-EEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccc
Q 037288 262 ADFCTNPS--QAVIGTNLG-AAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAG 337 (513)
Q Consensus 262 ~~~s~~g~--~l~s~s~~~-i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~ 337 (513)
+.|.++-. .|.+|++++ |.+|+...-.++..++ |...|+.++.+|.|++.++.+.|+.++.||+-.++... +..+
T Consensus 89 L~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~-v~~L 167 (362)
T KOG0294|consen 89 LKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAF-VLNL 167 (362)
T ss_pred EEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccce-eecc
Confidence 99998664 677776554 9999999888877776 77889999999999999999999999999998887543 2222
Q ss_pred cccCcCeEEEeeCC---eEEEeE------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCC
Q 037288 338 RRHRIPYSRLQRND---RVTNEQ------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTT 408 (513)
Q Consensus 338 ~~h~~~v~~v~~~~---~~~s~~------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~ 408 (513)
. ..-+.|.|.| .++.+. |......+. ..+..+..+.|+.+. ++..|++|..|+.|.+||.. +
T Consensus 168 ~---~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~--~~i~~~~r~l~~~~l--~~~~L~vG~d~~~i~~~D~d--s 238 (362)
T KOG0294|consen 168 K---NKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVF--REIENPKRILCATFL--DGSELLVGGDNEWISLKDTD--S 238 (362)
T ss_pred C---CcceeeEEcCCCCEEEEEeccEEEEEecccHhHh--hhhhccccceeeeec--CCceEEEecCCceEEEeccC--C
Confidence 2 1223378887 444443 444433322 222333455565443 68899999999999999986 4
Q ss_pred ccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-----eEEEEecCCCCCeEEEEEc
Q 037288 409 RGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSG-----ELVFEDKFSNSVPSAVCWR 472 (513)
Q Consensus 409 ~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~-----~~~~~~~~~~~~v~~v~~~ 472 (513)
..+...+.+|.+.|..+..--.|++.+|+++|.||.|+|||++.. +++..+.. +..++|+...
T Consensus 239 ~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~-~~RltCl~~~ 306 (362)
T KOG0294|consen 239 DTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNT-NVRLTCLRVK 306 (362)
T ss_pred CccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEeec-CCccceeeeh
Confidence 558999999999998865555788999999999999999999876 56666655 4456665543
No 86
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=1.5e-20 Score=177.61 Aligned_cols=222 Identities=16% Similarity=0.184 Sum_probs=181.7
Q ss_pred cCcEEEEEEcCCC-CEEEEEeCCeEEEEECCCCcEEEEe-eeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccc
Q 037288 256 KCTVWTADFCTNP-SQAVIGTNLGAAMVDMETGMASWVC-RSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCS 333 (513)
Q Consensus 256 ~~~V~~~~~s~~g-~~l~s~s~~~i~vwd~~~~~~~~~~-~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~ 333 (513)
.+.|..++|+|.. .-+|+.+.-++.||+..+.....++ +.+..|.++.|-.||.++++|...|.|++||+.+...
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~i--- 102 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVI--- 102 (487)
T ss_pred cCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHH---
Confidence 3689999999944 4677777778999999887766644 4778899999999999999999999999999655332
Q ss_pred cccccccCcCeEEEeeCC----eEEEeE-------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEE
Q 037288 334 SRAGRRHRIPYSRLQRND----RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLY 402 (513)
Q Consensus 334 ~~~~~~h~~~v~~v~~~~----~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lw 402 (513)
++.+.+|..++..+.|+| .+++|+ |++.+... ......|.+.|.|..+.+-+++.+++|+.||.|++|
T Consensus 103 LR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~ 181 (487)
T KOG0310|consen 103 LRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV-QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLW 181 (487)
T ss_pred HHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE-EEEecCCcceeEeeccccCCCeEEEecCCCceEEEE
Confidence 779999999999999999 566666 88887774 334446678889987777778899999999999999
Q ss_pred ecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CeEEEEecCCCCCeEEEEEcCCCceEEee
Q 037288 403 DHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRS-GELVFEDKFSNSVPSAVCWRTQRSMGPQI 481 (513)
Q Consensus 403 d~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~-~~~~~~~~~~~~~v~~v~~~p~~~~~~t~ 481 (513)
|+|... ..+.++. |..+|.. +.+-|.|..|++++ ...|+|||+.+ ++++.....|.-.|+|+++..++.-|.++
T Consensus 182 DtR~~~-~~v~eln-hg~pVe~--vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~ 256 (487)
T KOG0310|consen 182 DTRSLT-SRVVELN-HGCPVES--VLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSG 256 (487)
T ss_pred EeccCC-ceeEEec-CCCceee--EEEcCCCCEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeec
Confidence 999422 4677776 8888877 77889999999887 45799999995 55555555588889999999999999999
Q ss_pred CCCee
Q 037288 482 EGKIH 486 (513)
Q Consensus 482 ~~~~~ 486 (513)
+-|-+
T Consensus 257 sLD~~ 261 (487)
T KOG0310|consen 257 SLDRH 261 (487)
T ss_pred ccccc
Confidence 88877
No 87
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=3.9e-21 Score=190.49 Aligned_cols=188 Identities=13% Similarity=0.199 Sum_probs=152.4
Q ss_pred cEEEEEEcC-CCCEEEEEeCCe-EEEEECCC---CcEEEEe-eeCCCeEEEEEecCC-cEEEEEeCCCeEEEEECCCCcc
Q 037288 258 TVWTADFCT-NPSQAVIGTNLG-AAMVDMET---GMASWVC-RSKSDILAQQVIHSG-NVVLCGFRNGAIVTVDVRKRQR 330 (513)
Q Consensus 258 ~V~~~~~s~-~g~~l~s~s~~~-i~vwd~~~---~~~~~~~-~~~~~V~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~~~ 330 (513)
.+..+.|+. +.++||+++..+ |.+||+.. .+.+..+ .|...+.+++|++.. ++|++|+.||+|++||+|..+.
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 566788875 567888886555 89999987 3333333 488889999999865 8999999999999999998876
Q ss_pred ccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCcc
Q 037288 331 GCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRG 410 (513)
Q Consensus 331 ~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~ 410 (513)
.. ++.+....|+.|.|+| ..++.|+++...|.+++||+| ...
T Consensus 169 ~~---t~~~nSESiRDV~fsp---------------------------------~~~~~F~s~~dsG~lqlWDlR--qp~ 210 (839)
T KOG0269|consen 169 KS---TFRSNSESIRDVKFSP---------------------------------GYGNKFASIHDSGYLQLWDLR--QPD 210 (839)
T ss_pred cc---cccccchhhhceeecc---------------------------------CCCceEEEecCCceEEEeecc--Cch
Confidence 43 6677777788777654 358899999999999999999 444
Q ss_pred -ceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe--EEEEecCCCCCeEEEEEcCC-CceEEeeCCCee
Q 037288 411 -AVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGE--LVFEDKFSNSVPSAVCWRTQ-RSMGPQIEGKIH 486 (513)
Q Consensus 411 -~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~--~~~~~~~~~~~v~~v~~~p~-~~~~~t~~~~~~ 486 (513)
+...+.+|.++|.+ +.|+|++.|||+||.|+.|+|||+.+++ .+.++. ...+|..|.|-|. ...||++..-..
T Consensus 211 r~~~k~~AH~GpV~c--~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~d 287 (839)
T KOG0269|consen 211 RCEKKLTAHNGPVLC--LNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVD 287 (839)
T ss_pred hHHHHhhcccCceEE--EeecCCCceeeecCCCccEEEEeccCCCccceeEEe-ecceeeeeeeccCccchhhhhhcccc
Confidence 88889999999877 9999999999999999999999998654 344443 3678999999999 567888776655
No 88
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=3.1e-19 Score=180.40 Aligned_cols=258 Identities=12% Similarity=0.186 Sum_probs=183.0
Q ss_pred eeeCCCCceeeeeEEeccccCeEEEEEeecccccccceeEEeeeccccccccccccccCCCCCccccCcceee-ecccce
Q 037288 113 NVQTPEGQFRTDVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNKTESSKAPEHIWRLNKASIL-MPSSVS 191 (513)
Q Consensus 113 ~~~~~~g~~~~~~l~tg~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~-~~s~i~ 191 (513)
-..+|+|. .|.+.+.||.|++|+....... |. .+. ....|.
T Consensus 19 i~~d~~ge----fi~tcgsdg~ir~~~~~sd~e~--------------------------------P~--ti~~~g~~v~ 60 (933)
T KOG1274|consen 19 ICYDPDGE----FICTCGSDGDIRKWKTNSDEEE--------------------------------PE--TIDISGELVS 60 (933)
T ss_pred EEEcCCCC----EEEEecCCCceEEeecCCcccC--------------------------------Cc--hhhccCceeE
Confidence 34677776 5889999999999997433200 00 111 233444
Q ss_pred EEEecCCCCccccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEE
Q 037288 192 CIKLFGKHPSCATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQA 271 (513)
Q Consensus 192 si~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l 271 (513)
+|.....+ +..+..++.+.+|...++... ..+...+-++.+++++.+|.++
T Consensus 61 ~ia~~s~~-----------------f~~~s~~~tv~~y~fps~~~~------------~iL~Rftlp~r~~~v~g~g~~i 111 (933)
T KOG1274|consen 61 SIACYSNH-----------------FLTGSEQNTVLRYKFPSGEED------------TILARFTLPIRDLAVSGSGKMI 111 (933)
T ss_pred EEeecccc-----------------eEEeeccceEEEeeCCCCCcc------------ceeeeeeccceEEEEecCCcEE
Confidence 44443332 122334666666666544332 2255667899999999999999
Q ss_pred EEEeCCe-EEEEECCCCcEEEEe-eeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEee
Q 037288 272 VIGTNLG-AAMVDMETGMASWVC-RSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQR 349 (513)
Q Consensus 272 ~s~s~~~-i~vwd~~~~~~~~~~-~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~ 349 (513)
|.|+++. |++.++.+......+ .|+++|.++.|+|.+++||+.+.||+|++||+.++....++..+....+
T Consensus 112 aagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~------- 184 (933)
T KOG1274|consen 112 AAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNE------- 184 (933)
T ss_pred EeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCcccc-------
Confidence 9999887 999998887655554 4899999999999999999999999999999998865431111111111
Q ss_pred CCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecC--CCCceeEEEE
Q 037288 350 NDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEG--HVNSHTRIQL 427 (513)
Q Consensus 350 ~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~--h~~~v~~~~~ 427 (513)
.....+++..+|+|++..|+....|+.|++|+.. .......+.. +...+ ..+
T Consensus 185 ----------------------~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~--~we~~f~Lr~~~~ss~~--~~~ 238 (933)
T KOG1274|consen 185 ----------------------FILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRK--GWELQFKLRDKLSSSKF--SDL 238 (933)
T ss_pred ----------------------ccccceeeeeeecCCCCeEEeeccCCeEEEEccC--Cceeheeecccccccce--EEE
Confidence 1124566778999998888888999999999986 4445555543 33334 448
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCC
Q 037288 428 GVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQ 474 (513)
Q Consensus 428 ~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~ 474 (513)
.|+|+|+|||+++.||.|.|||+.+.+. ......|++++|.|+
T Consensus 239 ~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~ 281 (933)
T KOG1274|consen 239 QWSPNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPN 281 (933)
T ss_pred EEcCCCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCC
Confidence 9999999999999999999999998332 223456999999998
No 89
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=1.6e-20 Score=186.23 Aligned_cols=197 Identities=15% Similarity=0.187 Sum_probs=154.8
Q ss_pred EeccccCcEEEEEEcC-CCCEEEEEeC-CeEEEEECCCCcEEEEeeeCC-CeEEEEEec-CCcEEEEEeCCCeEEEEECC
Q 037288 251 LVASFKCTVWTADFCT-NPSQAVIGTN-LGAAMVDMETGMASWVCRSKS-DILAQQVIH-SGNVVLCGFRNGAIVTVDVR 326 (513)
Q Consensus 251 ~~~~h~~~V~~~~~s~-~g~~l~s~s~-~~i~vwd~~~~~~~~~~~~~~-~V~~l~~~~-~~~~l~sg~~dg~i~iwd~~ 326 (513)
.+..|+..|++++|++ ...+|++|+. ++|++||++......++...+ .|..|+|+| .++.++++...|.+++||+|
T Consensus 128 ~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlR 207 (839)
T KOG0269|consen 128 VFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLR 207 (839)
T ss_pred HhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeecc
Confidence 3788999999999998 4557778865 559999999888766666554 499999998 56899999999999999999
Q ss_pred CCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCC
Q 037288 327 KRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRL 406 (513)
Q Consensus 327 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~ 406 (513)
.... + ...+.+|.++|.++.| +|++.+||||+.|+.|+|||+..
T Consensus 208 qp~r-~-~~k~~AH~GpV~c~nw----------------------------------hPnr~~lATGGRDK~vkiWd~t~ 251 (839)
T KOG0269|consen 208 QPDR-C-EKKLTAHNGPVLCLNW----------------------------------HPNREWLATGGRDKMVKIWDMTD 251 (839)
T ss_pred Cchh-H-HHHhhcccCceEEEee----------------------------------cCCCceeeecCCCccEEEEeccC
Confidence 8864 2 5689999999999666 45999999999999999999963
Q ss_pred CCccceEEecCCCCceeEEEEEEcCCCCE-EEEEeC--CCcEEEEeCCCCe-EEEEecCCCCCeEEEEEcCC-CceEEee
Q 037288 407 TTRGAVQSYEGHVNSHTRIQLGVDQSERF-VMSGGE--DCKLRIWSIRSGE-LVFEDKFSNSVPSAVCWRTQ-RSMGPQI 481 (513)
Q Consensus 407 ~~~~~~~~~~~h~~~v~~~~~~~s~~g~~-l~sg~~--Dg~v~vwd~~~~~-~~~~~~~~~~~v~~v~~~p~-~~~~~t~ 481 (513)
...+++.++. -..++.. +.|-|+..+ |++++. |-.|+|||++-.- +..++..|...++.++|... ...+-++
T Consensus 252 ~~~~~~~tIn-Tiapv~r--VkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~ 328 (839)
T KOG0269|consen 252 SRAKPKHTIN-TIAPVGR--VKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSC 328 (839)
T ss_pred CCccceeEEe-ecceeee--eeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEee
Confidence 3333555554 2344555 888887654 555553 7889999998764 55668889999999999875 6677777
Q ss_pred CCCee
Q 037288 482 EGKIH 486 (513)
Q Consensus 482 ~~~~~ 486 (513)
+.|--
T Consensus 329 sKD~t 333 (839)
T KOG0269|consen 329 SKDGT 333 (839)
T ss_pred cCccH
Confidence 76644
No 90
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=3.2e-20 Score=186.50 Aligned_cols=197 Identities=12% Similarity=0.132 Sum_probs=149.1
Q ss_pred eeEEec-cccCcEEEEEEcCCCCEEEEEeCCe-EEEEECCC--------------------------------C------
Q 037288 248 TMHLVA-SFKCTVWTADFCTNPSQAVIGTNLG-AAMVDMET--------------------------------G------ 287 (513)
Q Consensus 248 ~~~~~~-~h~~~V~~~~~s~~g~~l~s~s~~~-i~vwd~~~--------------------------------~------ 287 (513)
..+.+. +|.++||++.|++||+|||+|+.++ |+||.+.. .
T Consensus 258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence 345566 8999999999999999999998776 89997654 0
Q ss_pred ----------------------cEEE-EeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCe
Q 037288 288 ----------------------MASW-VCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPY 344 (513)
Q Consensus 288 ----------------------~~~~-~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v 344 (513)
+++. +.+|.++|+.|.|+. .++|++++.|.+|++|++.......
T Consensus 338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~------------ 404 (712)
T KOG0283|consen 338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLK------------ 404 (712)
T ss_pred ccccccCCccccCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceee------------
Confidence 0000 113778899999985 4688899999999999998776432
Q ss_pred EEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeE
Q 037288 345 SRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTR 424 (513)
Q Consensus 345 ~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~ 424 (513)
++.|.+.|+|+.+.+-|.+||++|+.||.|+||++- ...+.-+..-..-|+.
T Consensus 405 -------------------------~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~---d~~Vv~W~Dl~~lITA 456 (712)
T KOG0283|consen 405 -------------------------VFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSIS---DKKVVDWNDLRDLITA 456 (712)
T ss_pred -------------------------EEecCCeeEEEEecccCCCcEeecccccceEEeecC---cCeeEeehhhhhhhee
Confidence 444555555554455689999999999999999995 4434444444466776
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec--CC------CCCeEEEEEcCCC--ceEEeeCCCeee
Q 037288 425 IQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDK--FS------NSVPSAVCWRTQR--SMGPQIEGKIHE 487 (513)
Q Consensus 425 ~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~--~~------~~~v~~v~~~p~~--~~~~t~~~~~~~ 487 (513)
++|.|||++.+.|+.+|.+++|++...++..... .+ ...|+++.|.|.. .+|+|+...-.+
T Consensus 457 --vcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIR 527 (712)
T KOG0283|consen 457 --VCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIR 527 (712)
T ss_pred --EEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceE
Confidence 8999999999999999999999999888776632 11 2379999999883 377776655443
No 91
>PTZ00421 coronin; Provisional
Probab=99.85 E-value=2.1e-19 Score=182.28 Aligned_cols=188 Identities=13% Similarity=0.085 Sum_probs=140.4
Q ss_pred CcEEEEEEcCCCCEEEEEeCCe-EEEEECCCCcEE--------------EEeeeCCCeEEEEEec-CCcEEEEEeCCCeE
Q 037288 257 CTVWTADFCTNPSQAVIGTNLG-AAMVDMETGMAS--------------WVCRSKSDILAQQVIH-SGNVVLCGFRNGAI 320 (513)
Q Consensus 257 ~~V~~~~~s~~g~~l~s~s~~~-i~vwd~~~~~~~--------------~~~~~~~~V~~l~~~~-~~~~l~sg~~dg~i 320 (513)
..|.....++++..+++++++. +..|+...+..+ .+..|.+.|++++|+| ++++|++|+.|++|
T Consensus 21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtI 100 (493)
T PTZ00421 21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTI 100 (493)
T ss_pred eccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEE
Confidence 3455555555654444444333 345554333211 2345888999999999 88999999999999
Q ss_pred EEEECCCCccc----cccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCC-CCEEEEEec
Q 037288 321 VTVDVRKRQRG----CSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLY-DQYFLASSM 395 (513)
Q Consensus 321 ~iwd~~~~~~~----~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~s~s~ 395 (513)
++||+...... ..+..+.+|...|.+++| +|+ +++|++|+.
T Consensus 101 kIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f----------------------------------~P~~~~iLaSgs~ 146 (493)
T PTZ00421 101 MGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSF----------------------------------HPSAMNVLASAGA 146 (493)
T ss_pred EEEecCCCccccccCcceEEecCCCCcEEEEEe----------------------------------CcCCCCEEEEEeC
Confidence 99999765321 114467778887777655 444 478999999
Q ss_pred CCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCC-eEEEEEcCC
Q 037288 396 DGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSV-PSAVCWRTQ 474 (513)
Q Consensus 396 dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~-v~~v~~~p~ 474 (513)
|+.|+|||+. ....+..+.+|...|.. ++|+|+|.+|++|+.|++|+|||+++++.+..+..|.+. +..+.|.++
T Consensus 147 DgtVrIWDl~--tg~~~~~l~~h~~~V~s--la~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~ 222 (493)
T PTZ00421 147 DMVVNVWDVE--RGKAVEVIKCHSDQITS--LEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKR 222 (493)
T ss_pred CCEEEEEECC--CCeEEEEEcCCCCceEE--EEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCC
Confidence 9999999997 45578889999998877 899999999999999999999999999999998887654 457889988
Q ss_pred CceEEeeC
Q 037288 475 RSMGPQIE 482 (513)
Q Consensus 475 ~~~~~t~~ 482 (513)
...+++.+
T Consensus 223 ~~~ivt~G 230 (493)
T PTZ00421 223 KDLIITLG 230 (493)
T ss_pred CCeEEEEe
Confidence 65555543
No 92
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.85 E-value=3e-20 Score=170.10 Aligned_cols=226 Identities=16% Similarity=0.230 Sum_probs=163.9
Q ss_pred CCCccEEEEecCCCCCCCCC----cccccCceeEEeccccCcEEEEEEcCCCC-EEEEE-eCCeEEEEECCCCc----EE
Q 037288 221 TTGGSIYALNLDNPLDIGPN----FSIIRRSTMHLVASFKCTVWTADFCTNPS-QAVIG-TNLGAAMVDMETGM----AS 290 (513)
Q Consensus 221 ~~~g~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~h~~~V~~~~~s~~g~-~l~s~-s~~~i~vwd~~~~~----~~ 290 (513)
...|.+.+|++......+.. .+-.....++++.+|...=++++|||-.. .|++| .-..|++|...+|. ..
T Consensus 172 se~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~ 251 (440)
T KOG0302|consen 172 SENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQR 251 (440)
T ss_pred cccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCc
Confidence 35678888776544322211 11133446899999999999999999322 24444 34569999988875 33
Q ss_pred EEeeeCCCeEEEEEecCC-cEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCccccee
Q 037288 291 WVCRSKSDILAQQVIHSG-NVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSH 369 (513)
Q Consensus 291 ~~~~~~~~V~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~ 369 (513)
.+..|...|-.++|+|.. .+|++|+.||+|+|||+|.+.... .....+|...|..|.|+.
T Consensus 252 Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~-~~~~kAh~sDVNVISWnr------------------ 312 (440)
T KOG0302|consen 252 PFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKA-AVSTKAHNSDVNVISWNR------------------ 312 (440)
T ss_pred cccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccc-eeEeeccCCceeeEEccC------------------
Confidence 445588899999999976 799999999999999999986554 333477888887766643
Q ss_pred EeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCcc-ceEEecCCCCceeEEEEEEcCC-CCEEEEEeCCCcEEE
Q 037288 370 TTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRG-AVQSYEGHVNSHTRIQLGVDQS-ERFVMSGGEDCKLRI 447 (513)
Q Consensus 370 ~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~-~~~~~~~h~~~v~~~~~~~s~~-g~~l~sg~~Dg~v~v 447 (513)
...+||+|+.||+++|||+|..+.+ ++.+|+-|..+|++ +.|+|. ...|+++|.|..|.+
T Consensus 313 ----------------~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pIts--ieW~p~e~s~iaasg~D~Qiti 374 (440)
T KOG0302|consen 313 ----------------REPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITS--IEWHPHEDSVIAASGEDNQITI 374 (440)
T ss_pred ----------------CcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeE--EEeccccCceEEeccCCCcEEE
Confidence 4558999999999999999965555 89999999999988 889985 467889999999999
Q ss_pred EeCCCCe-------------------EEEEecCCCCCeEEEEEcCC-CceEEeeCCC
Q 037288 448 WSIRSGE-------------------LVFEDKFSNSVPSAVCWRTQ-RSMGPQIEGK 484 (513)
Q Consensus 448 wd~~~~~-------------------~~~~~~~~~~~v~~v~~~p~-~~~~~t~~~~ 484 (513)
||+.-.. +++.-. ....+..+.|+++ .-++++...+
T Consensus 375 WDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHq-GQke~KevhWH~QiPG~lvsTa~d 430 (440)
T KOG0302|consen 375 WDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQ-GQKEVKEVHWHRQIPGLLVSTAID 430 (440)
T ss_pred EEeeccCChhhhccccccchhcCCceeEEEec-chhHhhhheeccCCCCeEEEeccc
Confidence 9985321 222211 1334777889888 4444444444
No 93
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.85 E-value=1.8e-19 Score=157.46 Aligned_cols=226 Identities=9% Similarity=0.039 Sum_probs=174.0
Q ss_pred EeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEE---eeeCCCeEEEEEecCC-cEEEEEeCCCeEEEEEC
Q 037288 251 LVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWV---CRSKSDILAQQVIHSG-NVVLCGFRNGAIVTVDV 325 (513)
Q Consensus 251 ~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~---~~~~~~V~~l~~~~~~-~~l~sg~~dg~i~iwd~ 325 (513)
.+++|...|.+++|+.+|..|++|+ |+++.+|+++..+.... ..|.+.|-.++|+|.. .++++++.|.+|++||+
T Consensus 15 ~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~ 94 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDI 94 (313)
T ss_pred HhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEe
Confidence 3788999999999999999999985 55699999987753332 2377789999999854 79999999999999999
Q ss_pred CCCccccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEec
Q 037288 326 RKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSM 395 (513)
Q Consensus 326 ~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~ 395 (513)
+..++.. ......+. ..+.|+| .++.+. .|.++.+.. ......-.+..+.+ ..++++|.....
T Consensus 95 r~~k~~~---~i~~~~en-i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~--~~~~~~~e~ne~~w-~~~nd~Fflt~G 167 (313)
T KOG1407|consen 95 RSGKCTA---RIETKGEN-INITWSPDGEYIAVGNKDDRITFIDARTYKIV--NEEQFKFEVNEISW-NNSNDLFFLTNG 167 (313)
T ss_pred ccCcEEE---EeeccCcc-eEEEEcCCCCEEEEecCcccEEEEEeccccee--ehhcccceeeeeee-cCCCCEEEEecC
Confidence 9998754 32222222 3455666 444443 344443322 12222333444434 456677776677
Q ss_pred CCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCC
Q 037288 396 DGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQR 475 (513)
Q Consensus 396 dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~ 475 (513)
.|+|.|.... ..++++++++|... |+++.|+|+|+++|+|+.|..+.+||+..--+++.+..++-+|+.+.|+-++
T Consensus 168 lG~v~ILsyp--sLkpv~si~AH~sn--CicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg 243 (313)
T KOG1407|consen 168 LGCVEILSYP--SLKPVQSIKAHPSN--CICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDG 243 (313)
T ss_pred CceEEEEecc--ccccccccccCCcc--eEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCc
Confidence 8999999876 66799999999954 6779999999999999999999999999999999999999999999999999
Q ss_pred ceEEeeCCCeee
Q 037288 476 SMGPQIEGKIHE 487 (513)
Q Consensus 476 ~~~~t~~~~~~~ 487 (513)
.|+|+.+.|..-
T Consensus 244 ~~lASaSEDh~I 255 (313)
T KOG1407|consen 244 RMLASASEDHFI 255 (313)
T ss_pred ceeeccCccceE
Confidence 999999988663
No 94
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=3.6e-21 Score=189.26 Aligned_cols=226 Identities=15% Similarity=0.148 Sum_probs=191.8
Q ss_pred eccccCcEEEEEEcCCCCEEEEEeCCe-EEEEECCCCcEEEE-eeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCc
Q 037288 252 VASFKCTVWTADFCTNPSQAVIGTNLG-AAMVDMETGMASWV-CRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQ 329 (513)
Q Consensus 252 ~~~h~~~V~~~~~s~~g~~l~s~s~~~-i~vwd~~~~~~~~~-~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~ 329 (513)
...|...|.++..-..++.+++|+++. +-+|.+.....+.. ..|.++|-++.|+++..+|++|+.+|+|++||+...+
T Consensus 24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk 103 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK 103 (825)
T ss_pred hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhh
Confidence 567888999999877888999998776 66998876655444 5699999999999999999999999999999999887
Q ss_pred cccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeE
Q 037288 330 RGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTV 399 (513)
Q Consensus 330 ~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i 399 (513)
. +++|.+|...+.+++|+| .++.|+ ||.+... +.+....+..+..+..|+|+|.+++.++.|..+
T Consensus 104 ~---vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~G--c~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tv 178 (825)
T KOG0267|consen 104 I---VRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKG--CSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTV 178 (825)
T ss_pred h---hhhhhccccCcceeeeccceEEeccccccccceehhhhccC--ceeeecCCcceeEEEeecCCCceeeccCCccee
Confidence 6 669999999999999999 343444 7776544 344555466677777999999999999999999
Q ss_pred EEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEE
Q 037288 400 KLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGP 479 (513)
Q Consensus 400 ~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~ 479 (513)
+|||+. ....+..|..|...+.. +.|+|.+-++++||.|++|++||+++-+.+...+.....|.+++|+|++..+.
T Consensus 179 ki~d~~--agk~~~ef~~~e~~v~s--le~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~ 254 (825)
T KOG0267|consen 179 KIWDLT--AGKLSKEFKSHEGKVQS--LEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVL 254 (825)
T ss_pred eeeccc--ccccccccccccccccc--cccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeee
Confidence 999997 56688999999999877 77999999999999999999999999999988877778899999999988888
Q ss_pred eeCCCee
Q 037288 480 QIEGKIH 486 (513)
Q Consensus 480 t~~~~~~ 486 (513)
++...-.
T Consensus 255 ~G~q~sl 261 (825)
T KOG0267|consen 255 SGEQISL 261 (825)
T ss_pred cCchhhh
Confidence 7766544
No 95
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.84 E-value=7.5e-19 Score=164.96 Aligned_cols=218 Identities=13% Similarity=0.143 Sum_probs=170.1
Q ss_pred ccccCcEEEEEEcCCCCEEEEEeCCe-EEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCcc
Q 037288 253 ASFKCTVWTADFCTNPSQAVIGTNLG-AAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQR 330 (513)
Q Consensus 253 ~~h~~~V~~~~~s~~g~~l~s~s~~~-i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~ 330 (513)
.+|...+.+++.++||++||+|.-+. |.||+.++.+.+..+. |.+.|.+++|-...+.+++++.|..|++|++.....
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~ 278 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY 278 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH
Confidence 48999999999999999999997655 8899999999877755 888899999988778999999999999999988765
Q ss_pred ccccccccccCcCeEEEeeCC--eEEEeE--------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEE
Q 037288 331 GCSSRAGRRHRIPYSRLQRND--RVTNEQ--------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVK 400 (513)
Q Consensus 331 ~~~~~~~~~h~~~v~~v~~~~--~~~s~~--------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~ 400 (513)
+.++.+|.+.|.+|+-.. +.++.+ |.+..... .....+.+.+.|+..+ +...|++|++||.|.
T Consensus 279 ---vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesq--lifrg~~~sidcv~~I--n~~HfvsGSdnG~Ia 351 (479)
T KOG0299|consen 279 ---VETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQ--LIFRGGEGSIDCVAFI--NDEHFVSGSDNGSIA 351 (479)
T ss_pred ---HHHHhCCccceeeechhcccceEEeccccceeEEEeccccce--eeeeCCCCCeeeEEEe--cccceeeccCCceEE
Confidence 559999999999998876 444433 87743221 1111234467777665 467899999999999
Q ss_pred EEecCCCCccceEEec-CCC-----------CceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC----eEEEEecCCCC
Q 037288 401 LYDHRLTTRGAVQSYE-GHV-----------NSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSG----ELVFEDKFSNS 464 (513)
Q Consensus 401 lwd~~~~~~~~~~~~~-~h~-----------~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~----~~~~~~~~~~~ 464 (513)
+|++- +..++.+.. +|. ..++. ++..|...++++|+.+|.|++|-+.++ +++..+.. .+
T Consensus 352 LWs~~--KKkplf~~~~AHgv~~~~~~~~~~~Wits--la~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~-~G 426 (479)
T KOG0299|consen 352 LWSLL--KKKPLFTSRLAHGVIPELDPVNGNFWITS--LAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSL-VG 426 (479)
T ss_pred Eeeec--ccCceeEeeccccccCCccccccccceee--eEecccCceEEecCCCCceEEEEecCCccccceeeeccc-cc
Confidence 99996 455666553 231 13444 777899999999999999999999887 56666663 66
Q ss_pred CeEEEEEcCCCc-eEEeeC
Q 037288 465 VPSAVCWRTQRS-MGPQIE 482 (513)
Q Consensus 465 ~v~~v~~~p~~~-~~~t~~ 482 (513)
.|++++|++++. ++|+.+
T Consensus 427 fVNsl~f~~sgk~ivagiG 445 (479)
T KOG0299|consen 427 FVNSLAFSNSGKRIVAGIG 445 (479)
T ss_pred EEEEEEEccCCCEEEEecc
Confidence 799999999976 455433
No 96
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.84 E-value=1.7e-19 Score=185.72 Aligned_cols=248 Identities=12% Similarity=0.137 Sum_probs=179.6
Q ss_pred CCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeCCe-EEEEECCC----------C---
Q 037288 222 TGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNLG-AAMVDMET----------G--- 287 (513)
Q Consensus 222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~~-i~vwd~~~----------~--- 287 (513)
.+|.+.+|+...-......+...-...+.....|.+.|.|+.|++||++||+|+|+. |.||.... |
T Consensus 35 ~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~ 114 (942)
T KOG0973|consen 35 LDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAK 114 (942)
T ss_pred ccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCccccccccccc
Confidence 455555777664332222233322234566889999999999999999999999988 78998762 1
Q ss_pred -----cEEEEe-eeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCC--eEEEe-E-
Q 037288 288 -----MASWVC-RSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND--RVTNE-Q- 357 (513)
Q Consensus 288 -----~~~~~~-~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~--~~~s~-~- 357 (513)
++..++ .|.++|..++|+|++.+|++++.|++|.+||.++.+. ++.+.+|.+.|..+.|.| ++++. +
T Consensus 115 ~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~---~~vl~~H~s~VKGvs~DP~Gky~ASqsd 191 (942)
T KOG0973|consen 115 NVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFEL---LKVLRGHQSLVKGVSWDPIGKYFASQSD 191 (942)
T ss_pred ccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEcccccee---eeeeecccccccceEECCccCeeeeecC
Confidence 133333 4889999999999999999999999999999999865 669999999999999999 44443 3
Q ss_pred ------eecccCcccceeEeecC------CCceEEEEEcCCCCEEEEEec----CCeEEEEecCCCCccceEEecCCCCc
Q 037288 358 ------WFELKANIWPSHTTFMP------SSISCLQSLQLYDQYFLASSM----DGTVKLYDHRLTTRGAVQSYEGHVNS 421 (513)
Q Consensus 358 ------w~~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~~l~s~s~----dg~i~lwd~~~~~~~~~~~~~~h~~~ 421 (513)
|....-.+ .+.+..+ ..-..-..|+|||++|++... -.++.|.+-. ....-..|-||..+
T Consensus 192 Drtikvwrt~dw~i--~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~--tWk~~~~LvGH~~p 267 (942)
T KOG0973|consen 192 DRTLKVWRTSDWGI--EKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERG--TWKVDKDLVGHSAP 267 (942)
T ss_pred CceEEEEEccccee--eEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecC--CceeeeeeecCCCc
Confidence 66333111 1111110 111122478999999998643 3457777754 44467788999999
Q ss_pred eeEEEEEEcCC-----CC------------EEEEEeCCCcEEEEeCCCCeEEEEec-CCCCCeEEEEEcCCCceE
Q 037288 422 HTRIQLGVDQS-----ER------------FVMSGGEDCKLRIWSIRSGELVFEDK-FSNSVPSAVCWRTQRSMG 478 (513)
Q Consensus 422 v~~~~~~~s~~-----g~------------~l~sg~~Dg~v~vwd~~~~~~~~~~~-~~~~~v~~v~~~p~~~~~ 478 (513)
+++ +.|+|. .+ .+|+|+.|++|-||.....+++.... .-+..|..++|+|++..+
T Consensus 268 ~ev--vrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~L 340 (942)
T KOG0973|consen 268 VEV--VRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSL 340 (942)
T ss_pred eEE--EEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeE
Confidence 888 888772 11 67899999999999998888887743 235679999999996433
No 97
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.84 E-value=1e-19 Score=161.47 Aligned_cols=164 Identities=16% Similarity=0.237 Sum_probs=135.0
Q ss_pred eccccCcEEEEEEcC-CCCEEEEEe-CCeEEEEECCCCcEEEEeeeCCCeEEEEEecC---CcEEEEEeCCCeEEEEECC
Q 037288 252 VASFKCTVWTADFCT-NPSQAVIGT-NLGAAMVDMETGMASWVCRSKSDILAQQVIHS---GNVVLCGFRNGAIVTVDVR 326 (513)
Q Consensus 252 ~~~h~~~V~~~~~s~-~g~~l~s~s-~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~---~~~l~sg~~dg~i~iwd~~ 326 (513)
-.+|+..|.++.|-| |.-.+.+++ |.+++|||..+-+....+..++.|.+-+++|- .-+||+|.+|-.|++.|+.
T Consensus 97 ~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~ 176 (397)
T KOG4283|consen 97 ENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA 176 (397)
T ss_pred CccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEecc
Confidence 357888999999999 444555554 66799999999999998999999999999984 3689999999999999999
Q ss_pred CCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCC
Q 037288 327 KRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRL 406 (513)
Q Consensus 327 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~ 406 (513)
++.... .+.+|++.|.++.|+| ..+-.|++|+.||.|++||+|.
T Consensus 177 SGs~sH---~LsGHr~~vlaV~Wsp---------------------------------~~e~vLatgsaDg~irlWDiRr 220 (397)
T KOG4283|consen 177 SGSFSH---TLSGHRDGVLAVEWSP---------------------------------SSEWVLATGSADGAIRLWDIRR 220 (397)
T ss_pred CCccee---eeccccCceEEEEecc---------------------------------CceeEEEecCCCceEEEEEeec
Confidence 998755 8999999999988865 2455788999999999999984
Q ss_pred CCccceEEe--------------cCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe
Q 037288 407 TTRGAVQSY--------------EGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGE 454 (513)
Q Consensus 407 ~~~~~~~~~--------------~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~ 454 (513)
. .++...+ ..|.+.+.. ++|+.++.++++++.|..+++|+..+|+
T Consensus 221 a-sgcf~~lD~hn~k~~p~~~~n~ah~gkvng--la~tSd~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 221 A-SGCFRVLDQHNTKRPPILKTNTAHYGKVNG--LAWTSDARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred c-cceeEEeecccCccCccccccccccceeee--eeecccchhhhhccCccceEEeecccCc
Confidence 2 1244443 345566666 8999999999999999999999998876
No 98
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=3.3e-18 Score=153.16 Aligned_cols=267 Identities=13% Similarity=0.104 Sum_probs=196.3
Q ss_pred ccceEEEecCCCCccccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCC
Q 037288 188 SSVSCIKLFGKHPSCATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTN 267 (513)
Q Consensus 188 s~i~si~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~ 267 (513)
+.|+++++++.. ..+++.. .+|.+.+|+..... +.....|..++.+++|.++
T Consensus 14 d~IS~v~f~~~~----------~~LLvss-----WDgslrlYdv~~~~-------------l~~~~~~~~plL~c~F~d~ 65 (323)
T KOG1036|consen 14 DGISSVKFSPSS----------SDLLVSS-----WDGSLRLYDVPANS-------------LKLKFKHGAPLLDCAFADE 65 (323)
T ss_pred hceeeEEEcCcC----------CcEEEEe-----ccCcEEEEeccchh-------------hhhheecCCceeeeeccCC
Confidence 557777776333 3333222 58889888877431 2224568899999999987
Q ss_pred CCEEEEEeCCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEE
Q 037288 268 PSQAVIGTNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRL 347 (513)
Q Consensus 268 g~~l~s~s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v 347 (513)
...+..+.|+.|+.+|+.++....+-.|..+|.|+.+++....+++|+.|++|++||.+...... ++ .....|.++
T Consensus 66 ~~~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~---~~-d~~kkVy~~ 141 (323)
T KOG1036|consen 66 STIVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVG---TF-DQGKKVYCM 141 (323)
T ss_pred ceEEEeccCceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccc---cc-ccCceEEEE
Confidence 77777778999999999999988888899999999999988999999999999999999744321 22 233489999
Q ss_pred eeCC-eEEEeE-------eecccCcccc-eeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCc--cceEEec
Q 037288 348 QRND-RVTNEQ-------WFELKANIWP-SHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTR--GAVQSYE 416 (513)
Q Consensus 348 ~~~~-~~~s~~-------w~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~--~~~~~~~ 416 (513)
+... .++.|. ||++.-.... ...-...-.+.|+..++ ++.-+++++-||.|.+=.+...+. ..-..|+
T Consensus 142 ~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~p-n~eGy~~sSieGRVavE~~d~s~~~~skkyaFk 220 (323)
T KOG1036|consen 142 DVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVP-NGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFK 220 (323)
T ss_pred eccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEec-CCCceEEEeecceEEEEccCCchHHhhhceeEE
Confidence 8887 666654 8888755432 11222233566766665 777788899999998876652111 1334566
Q ss_pred CCCCc-------eeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCCeee
Q 037288 417 GHVNS-------HTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIHE 487 (513)
Q Consensus 417 ~h~~~-------v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~~ 487 (513)
.|... +..-+++|+|--+.|+|||.||.|.+||+.+.+.+..+..-...|.+++|+.++.+||.+..-..+
T Consensus 221 CHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~sy~ye 298 (323)
T KOG1036|consen 221 CHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASSYQYE 298 (323)
T ss_pred eeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEechhhh
Confidence 66431 122348999998899999999999999999999999887666779999999998888877766554
No 99
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=6.9e-18 Score=151.88 Aligned_cols=226 Identities=12% Similarity=0.076 Sum_probs=182.2
Q ss_pred eccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEEeeeC-CCeEEEEEecCCcEEEEEeC--CCeEEEEECCC
Q 037288 252 VASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWVCRSK-SDILAQQVIHSGNVVLCGFR--NGAIVTVDVRK 327 (513)
Q Consensus 252 ~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~~~~~-~~V~~l~~~~~~~~l~sg~~--dg~i~iwd~~~ 327 (513)
+......|.+++|+++|.++++++ |+.++|||..+++.+.++.++ -.|..+.|....+.++.++. |.+|+..++.+
T Consensus 10 f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~d 89 (311)
T KOG1446|consen 10 FRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHD 89 (311)
T ss_pred cccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeec
Confidence 344567999999999999998865 558999999999998888754 45888889877777766666 89999999998
Q ss_pred CccccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCC
Q 037288 328 RQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDG 397 (513)
Q Consensus 328 ~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg 397 (513)
.+. ++.+.||...|.+++.+| .+++++ ||++..+... ........+.+++|+|-+||++...+
T Consensus 90 Nky---lRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg----~l~~~~~pi~AfDp~GLifA~~~~~~ 162 (311)
T KOG1446|consen 90 NKY---LRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQG----LLNLSGRPIAAFDPEGLIFALANGSE 162 (311)
T ss_pred Cce---EEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCce----EEecCCCcceeECCCCcEEEEecCCC
Confidence 886 669999999999999999 788887 9998655332 22223344568999999999999888
Q ss_pred eEEEEecCCCCccceEEecCC---CCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCC---eEEEEE
Q 037288 398 TVKLYDHRLTTRGAVQSYEGH---VNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSV---PSAVCW 471 (513)
Q Consensus 398 ~i~lwd~~~~~~~~~~~~~~h---~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~---v~~v~~ 471 (513)
.|++||+|....++..++.-. ....+. +.|+|||++|+.+...+.+++.|.-+|....++..+... .-..+|
T Consensus 163 ~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~--l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~f 240 (311)
T KOG1446|consen 163 LIKLYDLRSFDKGPFTTFSITDNDEAEWTD--LEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATF 240 (311)
T ss_pred eEEEEEecccCCCCceeEccCCCCccceee--eEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEE
Confidence 999999998777787777543 333444 899999999999999999999999999999887655322 367899
Q ss_pred cCCCceEEeeCCCee
Q 037288 472 RTQRSMGPQIEGKIH 486 (513)
Q Consensus 472 ~p~~~~~~t~~~~~~ 486 (513)
.|++.++.+++.|-.
T Consensus 241 tPds~Fvl~gs~dg~ 255 (311)
T KOG1446|consen 241 TPDSKFVLSGSDDGT 255 (311)
T ss_pred CCCCcEEEEecCCCc
Confidence 999888777777544
No 100
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.83 E-value=1.9e-19 Score=169.87 Aligned_cols=260 Identities=14% Similarity=0.151 Sum_probs=190.9
Q ss_pred eeeEEeccccCeEEEEEeecccccccceeEEeeeccccccccccccccCCCCCccccCcceeeecccceEEEe-------
Q 037288 123 TDVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNKTESSKAPEHIWRLNKASILMPSSVSCIKL------- 195 (513)
Q Consensus 123 ~~~l~tg~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~s~i~si~~------- 195 (513)
..+|+.|++||.|+||++.... ........+ +.. +.+++|+..+.++...+--..+++
T Consensus 227 ~hLlLS~gmD~~vklW~vy~~~-~~lrtf~gH---------~k~-----Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~ 291 (503)
T KOG0282|consen 227 GHLLLSGGMDGLVKLWNVYDDR-RCLRTFKGH---------RKP-----VRDASFNNCGTSFLSASFDRFLKLWDTETGQ 291 (503)
T ss_pred eeEEEecCCCceEEEEEEecCc-ceehhhhcc---------hhh-----hhhhhccccCCeeeeeecceeeeeeccccce
Confidence 5689999999999999995532 111222222 222 677788777655443332222222
Q ss_pred ------cCCCCccccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCC
Q 037288 196 ------FGKHPSCATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPS 269 (513)
Q Consensus 196 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~ 269 (513)
.+..+.+..++|.+.+.+++.+ .++.+..|++.+++. ++++..|-+.|.++.|-++|+
T Consensus 292 ~~~~f~~~~~~~cvkf~pd~~n~fl~G~----sd~ki~~wDiRs~kv------------vqeYd~hLg~i~~i~F~~~g~ 355 (503)
T KOG0282|consen 292 VLSRFHLDKVPTCVKFHPDNQNIFLVGG----SDKKIRQWDIRSGKV------------VQEYDRHLGAILDITFVDEGR 355 (503)
T ss_pred EEEEEecCCCceeeecCCCCCcEEEEec----CCCcEEEEeccchHH------------HHHHHhhhhheeeeEEccCCc
Confidence 2455667788888755555444 677888888776553 345778889999999999999
Q ss_pred EEEEEeCCe-EEEEECCCCcEEEEee--eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEE
Q 037288 270 QAVIGTNLG-AAMVDMETGMASWVCR--SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSR 346 (513)
Q Consensus 270 ~l~s~s~~~-i~vwd~~~~~~~~~~~--~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~ 346 (513)
.+++++|+. ++||+...+..+.... ..-...|+..+|+++++++-+.|..|.++.+...-....-+.+.+|..+=.+
T Consensus 356 rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys 435 (503)
T KOG0282|consen 356 RFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYS 435 (503)
T ss_pred eEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCce
Confidence 999888765 9999999887665544 3334678899999999999999999999987654332223467777544333
Q ss_pred EeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEE
Q 037288 347 LQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQ 426 (513)
Q Consensus 347 v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~ 426 (513)
+-+.|+|||.+|++|+.||.+.+||.+ ....+..+++|...+..
T Consensus 436 --------------------------------~~v~fSpDG~~l~SGdsdG~v~~wdwk--t~kl~~~lkah~~~ci~-- 479 (503)
T KOG0282|consen 436 --------------------------------CQVDFSPDGRTLCSGDSDGKVNFWDWK--TTKLVSKLKAHDQPCIG-- 479 (503)
T ss_pred --------------------------------eeEEEcCCCCeEEeecCCccEEEeech--hhhhhhccccCCcceEE--
Confidence 225789999999999999999999997 56688899999877655
Q ss_pred EEEcCCC-CEEEEEeCCCcEEEEe
Q 037288 427 LGVDQSE-RFVMSGGEDCKLRIWS 449 (513)
Q Consensus 427 ~~~s~~g-~~l~sg~~Dg~v~vwd 449 (513)
+.|+|.. ..+|+++.||.|++|+
T Consensus 480 v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 480 VDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EEecCCCcceeEecccCceeEecC
Confidence 8999964 6799999999999996
No 101
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.83 E-value=2.6e-19 Score=164.00 Aligned_cols=251 Identities=12% Similarity=0.098 Sum_probs=166.7
Q ss_pred eeeEEeccccCeEEEEEeecccccccceeEEeeeccccccccccccccCCCCCccccCcceeeecccceEEEecCCCCcc
Q 037288 123 TDVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNKTESSKAPEHIWRLNKASILMPSSVSCIKLFGKHPSC 202 (513)
Q Consensus 123 ~~~l~tg~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~s~i~si~~~~~~~~~ 202 (513)
..+.++-+..|.|.+|+++.....+...-...++....++-+...+..+-...+|+|-.
T Consensus 165 ~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~--------------------- 223 (440)
T KOG0302|consen 165 EVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIK--------------------- 223 (440)
T ss_pred cceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccc---------------------
Confidence 34667778999999999965443322222222222222222333333445566776631
Q ss_pred ccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCC-EEEEE-eCCeEE
Q 037288 203 ATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPS-QAVIG-TNLGAA 280 (513)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~-~l~s~-s~~~i~ 280 (513)
...++++++.+.+.+|...+ ..|.+.+.+ +.+|+..|-.+.|||... .||+| .|+.|+
T Consensus 224 -----------~g~LlsGDc~~~I~lw~~~~-----g~W~vd~~P----f~gH~~SVEDLqWSptE~~vfaScS~DgsIr 283 (440)
T KOG0302|consen 224 -----------TGRLLSGDCVKGIHLWEPST-----GSWKVDQRP----FTGHTKSVEDLQWSPTEDGVFASCSCDGSIR 283 (440)
T ss_pred -----------ccccccCccccceEeeeecc-----CceeecCcc----ccccccchhhhccCCccCceEEeeecCceEE
Confidence 11123444555566655442 234444444 778999999999999544 67766 577899
Q ss_pred EEECCCC---cEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeE
Q 037288 281 MVDMETG---MASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQ 357 (513)
Q Consensus 281 vwd~~~~---~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~ 357 (513)
|||++.+ .++.+..|.+.|..|.|+..-.+|++|+.||+++|||+|+-+....+..+.-|..+|++|.|+|
T Consensus 284 IWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p------ 357 (440)
T KOG0302|consen 284 IWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHP------ 357 (440)
T ss_pred EEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEecc------
Confidence 9999988 4566666999999999998888999999999999999998775544668888999999988865
Q ss_pred eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCc--------------cceEEecCCCCcee
Q 037288 358 WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTR--------------GAVQSYEGHVNSHT 423 (513)
Q Consensus 358 w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~--------------~~~~~~~~h~~~v~ 423 (513)
.+...|++++.|.+|.+||+..... -+-+-+-.|.+.-.
T Consensus 358 ---------------------------~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke 410 (440)
T KOG0302|consen 358 ---------------------------HEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKE 410 (440)
T ss_pred ---------------------------ccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhH
Confidence 3566788999999999999864211 01122223433222
Q ss_pred EEEEEEcCC-CCEEEEEeCCCcEEEE
Q 037288 424 RIQLGVDQS-ERFVMSGGEDCKLRIW 448 (513)
Q Consensus 424 ~~~~~~s~~-g~~l~sg~~Dg~v~vw 448 (513)
.-.+.|++. ..+|++.+.|| +.||
T Consensus 411 ~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 411 VKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred hhhheeccCCCCeEEEecccc-eeEE
Confidence 233778775 46788888888 3444
No 102
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=2e-18 Score=154.91 Aligned_cols=202 Identities=9% Similarity=0.052 Sum_probs=152.2
Q ss_pred eccccCcEEEEEEcCCCCEEEEEeCCe-EEEEECCCCcEEEEeee-CCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCc
Q 037288 252 VASFKCTVWTADFCTNPSQAVIGTNLG-AAMVDMETGMASWVCRS-KSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQ 329 (513)
Q Consensus 252 ~~~h~~~V~~~~~s~~g~~l~s~s~~~-i~vwd~~~~~~~~~~~~-~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~ 329 (513)
-..|.-.|..+-...++.+|++++.++ |.+|++. |+.+..+.. ...-+..+.+|+|++|++++....|++|.+--.+
T Consensus 183 ~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~k 261 (420)
T KOG2096|consen 183 ERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTK 261 (420)
T ss_pred chhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEecc
Confidence 345777788888888899999998776 9999999 877766663 3446777899999999999999999999863221
Q ss_pred -----cccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEec
Q 037288 330 -----RGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDH 404 (513)
Q Consensus 330 -----~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~ 404 (513)
....+..+.+|...|... +|+++...+++.+.||++++||.
T Consensus 262 dG~fqev~rvf~LkGH~saV~~~----------------------------------aFsn~S~r~vtvSkDG~wriwdt 307 (420)
T KOG2096|consen 262 DGTFQEVKRVFSLKGHQSAVLAA----------------------------------AFSNSSTRAVTVSKDGKWRIWDT 307 (420)
T ss_pred Ccchhhhhhhheeccchhheeee----------------------------------eeCCCcceeEEEecCCcEEEeec
Confidence 111244678898888884 55678999999999999999997
Q ss_pred CCC--Cc---cceEEe--cCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEe-cCCCCCeEEEEEcCCCc
Q 037288 405 RLT--TR---GAVQSY--EGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFED-KFSNSVPSAVCWRTQRS 476 (513)
Q Consensus 405 ~~~--~~---~~~~~~--~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~-~~~~~~v~~v~~~p~~~ 476 (513)
..- .. ..+++. .-|...-..+++..+|+|+.|+.+. ..+++++..++|+..-++ +.|+..|.+++|++++.
T Consensus 308 dVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~ 386 (420)
T KOG2096|consen 308 DVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGK 386 (420)
T ss_pred cceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCc
Confidence 521 11 122222 1122222235689999999776644 567999999999877765 46888999999999999
Q ss_pred eEEeeCCCeeeee
Q 037288 477 MGPQIEGKIHEEF 489 (513)
Q Consensus 477 ~~~t~~~~~~~~~ 489 (513)
+++|++..+.+.+
T Consensus 387 ~~atcGdr~vrv~ 399 (420)
T KOG2096|consen 387 YIATCGDRYVRVI 399 (420)
T ss_pred EEeeecceeeeee
Confidence 9999999988643
No 103
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.82 E-value=5.3e-18 Score=169.74 Aligned_cols=221 Identities=17% Similarity=0.207 Sum_probs=173.9
Q ss_pred cEEEEEEcCC-----CCEEEEEe-CCeEEEEECCCCcE-EEEeeeC------CCeEEEEEecCCcEEEEEeCCCeEEEEE
Q 037288 258 TVWTADFCTN-----PSQAVIGT-NLGAAMVDMETGMA-SWVCRSK------SDILAQQVIHSGNVVLCGFRNGAIVTVD 324 (513)
Q Consensus 258 ~V~~~~~s~~-----g~~l~s~s-~~~i~vwd~~~~~~-~~~~~~~------~~V~~l~~~~~~~~l~sg~~dg~i~iwd 324 (513)
+|..+++... .+.+++.- +..++.|+...... ..++.+. ..+++++.++.|++.+.|...|.|-+|+
T Consensus 397 ~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fN 476 (910)
T KOG1539|consen 397 PIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFN 476 (910)
T ss_pred cceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEE
Confidence 5666665431 12333333 33488999887664 4445544 5689999999999999999999999999
Q ss_pred CCCCccccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEe
Q 037288 325 VRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASS 394 (513)
Q Consensus 325 ~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s 394 (513)
+.++-....+..-+.|..+|+.++... .+++++ |+..+..+ ...+.....+.++ .++.....++++.
T Consensus 477 mQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l--~~~l~l~~~~~~i-v~hr~s~l~a~~~ 553 (910)
T KOG1539|consen 477 MQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVL--KKSLRLGSSITGI-VYHRVSDLLAIAL 553 (910)
T ss_pred cccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcce--eeeeccCCCccee-eeeehhhhhhhhc
Confidence 998865442333479999999999877 466655 88877763 3455566666666 4455677889999
Q ss_pred cCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCC
Q 037288 395 MDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQ 474 (513)
Q Consensus 395 ~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~ 474 (513)
.|-.|.++|.. ....++.|.||.+.++. ++|||||+||++++.|++|++||+.++.++-.+.. +.+++.+.|+|+
T Consensus 554 ddf~I~vvD~~--t~kvvR~f~gh~nritd--~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~v-d~~~~sls~SPn 628 (910)
T KOG1539|consen 554 DDFSIRVVDVV--TRKVVREFWGHGNRITD--MTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLV-DSPCTSLSFSPN 628 (910)
T ss_pred CceeEEEEEch--hhhhhHHhhccccceee--eEeCCCCcEEEEeecCCcEEEEeccCcceeeeEec-CCcceeeEECCC
Confidence 99999999996 55588999999999988 99999999999999999999999999999988765 678999999999
Q ss_pred CceEEeeCCCee
Q 037288 475 RSMGPQIEGKIH 486 (513)
Q Consensus 475 ~~~~~t~~~~~~ 486 (513)
+.++||...|..
T Consensus 629 gD~LAT~Hvd~~ 640 (910)
T KOG1539|consen 629 GDFLATVHVDQN 640 (910)
T ss_pred CCEEEEEEecCc
Confidence 999999988843
No 104
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.82 E-value=5.6e-19 Score=153.40 Aligned_cols=164 Identities=18% Similarity=0.271 Sum_probs=135.2
Q ss_pred EEeccccCcEEEEEEcCCCCEEEEE-eCCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCC
Q 037288 250 HLVASFKCTVWTADFCTNPSQAVIG-TNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKR 328 (513)
Q Consensus 250 ~~~~~h~~~V~~~~~s~~g~~l~s~-s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~ 328 (513)
..+.+|.+.|..+-|+...+.+.++ .|++|++||..++..+..+..+..|+++..+++|.+|.++ .-+.|.+||..+-
T Consensus 137 ~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf 215 (334)
T KOG0278|consen 137 KEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSF 215 (334)
T ss_pred hhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEe-cCceeEEeccccc
Confidence 4588999999999999877766665 4566999999999999999999999999999999987666 5678999999877
Q ss_pred ccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCC
Q 037288 329 QRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTT 408 (513)
Q Consensus 329 ~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~ 408 (513)
.... ..+++-.|.+ ..++|+...|++|+.|+.++.||.. .
T Consensus 216 ~~lK-------------------------------------s~k~P~nV~S-ASL~P~k~~fVaGged~~~~kfDy~--T 255 (334)
T KOG0278|consen 216 GLLK-------------------------------------SYKMPCNVES-ASLHPKKEFFVAGGEDFKVYKFDYN--T 255 (334)
T ss_pred ccee-------------------------------------eccCcccccc-ccccCCCceEEecCcceEEEEEecc--C
Confidence 6432 2223333433 4788999999999999999999996 4
Q ss_pred ccceEEe-cCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE
Q 037288 409 RGAVQSY-EGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELV 456 (513)
Q Consensus 409 ~~~~~~~-~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~ 456 (513)
...+..+ ++|.++|.+ +.|+|+|...++|++||+|+||.+..++..
T Consensus 256 geEi~~~nkgh~gpVhc--VrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 256 GEEIGSYNKGHFGPVHC--VRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred CceeeecccCCCCceEE--EEECCCCceeeccCCCceEEEEEecCCCch
Confidence 4466665 899999877 899999999999999999999998776644
No 105
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=2.9e-18 Score=168.21 Aligned_cols=221 Identities=16% Similarity=0.133 Sum_probs=180.0
Q ss_pred cCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEEee--eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCcccc
Q 037288 256 KCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWVCR--SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGC 332 (513)
Q Consensus 256 ~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~~~--~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~ 332 (513)
...|+++.|+++|.+||+|. ++.|.|||..+.+.+..+. |...|-+++|+ +..+.+|+.|+.|..+|++..+...
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~ 294 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVV 294 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhh
Confidence 78999999999999999995 5569999998887666555 67779999998 7899999999999999999988654
Q ss_pred ccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEe--cCCeEE
Q 037288 333 SSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASS--MDGTVK 400 (513)
Q Consensus 333 ~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s--~dg~i~ 400 (513)
..+.+|...|..+.|++ .+++|+ ||...... ......|...|..+.+.+....+||+|+ .|++|+
T Consensus 295 --~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p-~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~ 371 (484)
T KOG0305|consen 295 --STLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEP-KFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIK 371 (484)
T ss_pred --hhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccc-cEEEeccceeeeEeeeCCCccCceEEcCCCcccEEE
Confidence 35899999999999999 666666 88843332 3445567778888877777788999875 599999
Q ss_pred EEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEE--eCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceE
Q 037288 401 LYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSG--GEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMG 478 (513)
Q Consensus 401 lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg--~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~ 478 (513)
+||.. ....+..... ...|.. +.|++..+-|+++ -.++.|.||+..+.+++..+.+|...|..++++|++..+
T Consensus 372 fwn~~--~g~~i~~vdt-gsQVcs--L~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i 446 (484)
T KOG0305|consen 372 FWNTN--TGARIDSVDT-GSQVCS--LIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETI 446 (484)
T ss_pred EEEcC--CCcEeccccc-CCceee--EEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEE
Confidence 99996 4446655542 334544 8999998766653 447789999999999999999999999999999999998
Q ss_pred EeeCCCee
Q 037288 479 PQIEGKIH 486 (513)
Q Consensus 479 ~t~~~~~~ 486 (513)
++.+.|--
T Consensus 447 ~t~a~DET 454 (484)
T KOG0305|consen 447 VTGAADET 454 (484)
T ss_pred EEecccCc
Confidence 88888844
No 106
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=2.3e-17 Score=141.27 Aligned_cols=288 Identities=16% Similarity=0.145 Sum_probs=197.1
Q ss_pred eeCCCCceeeeeEEeccccCeEEEEEeeccc--ccccceeEEeeeccccccccccccccCCCCCccccCcceeeecccce
Q 037288 114 VQTPEGQFRTDVLLTGSVNGFFSLFEVGNVG--QHAHDTVKFIPSCVWPRIKDNKTESSKAPEHIWRLNKASILMPSSVS 191 (513)
Q Consensus 114 ~~~~~g~~~~~~l~tg~~~G~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~s~i~ 191 (513)
.+-|.|. +-+.|+...++|+...-... ....+.....|... .+.++-+.+.+...+|+|.+..+...+.-.
T Consensus 39 ~fhp~g~----lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~---~kr~khhkgsiyc~~ws~~geliatgsndk 111 (350)
T KOG0641|consen 39 AFHPAGG----LYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVL---CKRNKHHKGSIYCTAWSPCGELIATGSNDK 111 (350)
T ss_pred EecCCCc----eEEeccCCceEEEEccccccCcccccccccCCCeEE---eeeccccCccEEEEEecCccCeEEecCCCc
Confidence 3556654 57889999999987652211 11111112222222 236666677888899999866655554322
Q ss_pred EEEecCCCCccccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcC----C
Q 037288 192 CIKLFGKHPSCATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCT----N 267 (513)
Q Consensus 192 si~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~----~ 267 (513)
.|++.+ ++.++-+.. -.-..+.-|.+.|..++|-. .
T Consensus 112 ~ik~l~-------------------------------fn~dt~~~~---------g~dle~nmhdgtirdl~fld~~~s~ 151 (350)
T KOG0641|consen 112 TIKVLP-------------------------------FNADTCNAT---------GHDLEFNMHDGTIRDLAFLDDPESG 151 (350)
T ss_pred eEEEEe-------------------------------ccccccccc---------CcceeeeecCCceeeeEEecCCCcC
Confidence 222211 111111110 01234777999999999964 3
Q ss_pred CCEEEEEe--CCeEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCcccccccccc--ccCc
Q 037288 268 PSQAVIGT--NLGAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGR--RHRI 342 (513)
Q Consensus 268 g~~l~s~s--~~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~--~h~~ 342 (513)
+.+|++++ |..|.+-|..+|+....+. |.+.|.++ ++-+|-++++|+.|.+|++||++....+. ++. -|.+
T Consensus 152 ~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~---~l~~~~~~~ 227 (350)
T KOG0641|consen 152 GAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVN---TLDNDFHDG 227 (350)
T ss_pred ceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceee---eccCcccCC
Confidence 55787764 3447888888888665554 78888887 35578999999999999999999876543 221 1111
Q ss_pred CeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCce
Q 037288 343 PYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSH 422 (513)
Q Consensus 343 ~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v 422 (513)
.. .++....++..|.|++|++|-.|....+||+| -...++.|..|...|
T Consensus 228 gl-----------------------------essavaav~vdpsgrll~sg~~dssc~lydir--g~r~iq~f~phsadi 276 (350)
T KOG0641|consen 228 GL-----------------------------ESSAVAAVAVDPSGRLLASGHADSSCMLYDIR--GGRMIQRFHPHSADI 276 (350)
T ss_pred Cc-----------------------------ccceeEEEEECCCcceeeeccCCCceEEEEee--CCceeeeeCCCccce
Confidence 11 11222235788999999999999999999998 666999999999998
Q ss_pred eEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC----eEEEEecCCCCCeEEEEEcCCCceEEeeCCCe
Q 037288 423 TRIQLGVDQSERFVMSGGEDCKLRIWSIRSG----ELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKI 485 (513)
Q Consensus 423 ~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~----~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~ 485 (513)
.+ +.|+|...++++++.|..|++-|+... -++.....|...+..+.|+|...-|++++.|-
T Consensus 277 r~--vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadk 341 (350)
T KOG0641|consen 277 RC--VRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADK 341 (350)
T ss_pred eE--EEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcc
Confidence 87 889999999999999999999998642 23444567788899999999988888877763
No 107
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.82 E-value=5.2e-19 Score=167.91 Aligned_cols=239 Identities=12% Similarity=0.079 Sum_probs=177.3
Q ss_pred cccCceeEEeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcE----EEEee--eCCCeEEEEEecCCcEEEEEe
Q 037288 243 IIRRSTMHLVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMA----SWVCR--SKSDILAQQVIHSGNVVLCGF 315 (513)
Q Consensus 243 ~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~----~~~~~--~~~~V~~l~~~~~~~~l~sg~ 315 (513)
..+..+-..+.+|+..|.++++.|.|..+++|+ |-.|++||+..... .+.+. -...|.+++|++.|..|++.+
T Consensus 154 ~IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvs 233 (641)
T KOG0772|consen 154 LIPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVS 233 (641)
T ss_pred cCCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEe
Confidence 345556677899999999999999999999996 55699999975431 11222 234599999999999888888
Q ss_pred CCCeEEEEECCCCcc---------ccccccccccCcCeEEEeeCC----eEEEeE-------eecccCcccceeEeecC-
Q 037288 316 RNGAIVTVDVRKRQR---------GCSSRAGRRHRIPYSRLQRND----RVTNEQ-------WFELKANIWPSHTTFMP- 374 (513)
Q Consensus 316 ~dg~i~iwd~~~~~~---------~~~~~~~~~h~~~v~~v~~~~----~~~s~~-------w~~~~~~~~~~~~~~~~- 374 (513)
.....+++|-..... +..+..-.+|...+++.+|+| .+++++ |++....- ....+++.
T Consensus 234 g~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~-q~qVik~k~ 312 (641)
T KOG0772|consen 234 GSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKS-QLQVIKTKP 312 (641)
T ss_pred cCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchh-heeEEeecc
Confidence 889999999764432 112456689999999999999 788887 88875442 12223221
Q ss_pred ----C-CceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccc-eEEecCCCC--ceeEEEEEEcCCCCEEEEEeCCCcEE
Q 037288 375 ----S-SISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGA-VQSYEGHVN--SHTRIQLGVDQSERFVMSGGEDCKLR 446 (513)
Q Consensus 375 ----~-~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~-~~~~~~h~~--~v~~~~~~~s~~g~~l~sg~~Dg~v~ 446 (513)
. .+++ +.|+++++.||+|..||.|.+||.+.....+ +..-.+|.. .+++ +.||+||++|++-|.|++++
T Consensus 313 ~~g~Rv~~ts-C~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Its--i~FS~dg~~LlSRg~D~tLK 389 (641)
T KOG0772|consen 313 AGGKRVPVTS-CAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITS--ISFSYDGNYLLSRGFDDTLK 389 (641)
T ss_pred CCCcccCcee-eecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeE--EEeccccchhhhccCCCcee
Confidence 1 2333 4799999999999999999999987333333 334467877 6666 99999999999999999999
Q ss_pred EEeCCCC-eEEEEecCC--CCCeEEEEEcCCCceEEeeCCCe
Q 037288 447 IWSIRSG-ELVFEDKFS--NSVPSAVCWRTQRSMGPQIEGKI 485 (513)
Q Consensus 447 vwd~~~~-~~~~~~~~~--~~~v~~v~~~p~~~~~~t~~~~~ 485 (513)
+||++.. +++.+..+- .-+-+.++|+|+..+++|+..-.
T Consensus 390 vWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~ 431 (641)
T KOG0772|consen 390 VWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAP 431 (641)
T ss_pred eeeccccccchhhhcCCCccCCCCccccCCCceEEEeccccc
Confidence 9999875 455554322 34568899999977776665433
No 108
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=6.3e-19 Score=163.10 Aligned_cols=228 Identities=14% Similarity=0.204 Sum_probs=167.5
Q ss_pred eeEEeccccCeEEEEEeeccccc--ccceeEEeeeccccccccccccccCCCCCccccCcceeeecccceEEEecCCCCc
Q 037288 124 DVLLTGSVNGFFSLFEVGNVGQH--AHDTVKFIPSCVWPRIKDNKTESSKAPEHIWRLNKASILMPSSVSCIKLFGKHPS 201 (513)
Q Consensus 124 ~~l~tg~~~G~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~s~i~si~~~~~~~~ 201 (513)
.+|++.+-+-.+++|++.++... +..++. ..+.+++|.|++..+...+
T Consensus 282 ryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~-----------------~S~~sc~W~pDg~~~V~Gs------------- 331 (519)
T KOG0293|consen 282 RYLLACGFDEVLSLWDVDTGDLRHLYPSGLG-----------------FSVSSCAWCPDGFRFVTGS------------- 331 (519)
T ss_pred CeEEecCchHheeeccCCcchhhhhcccCcC-----------------CCcceeEEccCCceeEecC-------------
Confidence 45777777778999999776533 222222 2278899999954444332
Q ss_pred cccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEE-EEeCCeEE
Q 037288 202 CATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAV-IGTNLGAA 280 (513)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~-s~s~~~i~ 280 (513)
.++.+..|+++... ...|.-.. ...|++++..+||+++. ++.|..|+
T Consensus 332 --------------------~dr~i~~wdlDgn~--~~~W~gvr----------~~~v~dlait~Dgk~vl~v~~d~~i~ 379 (519)
T KOG0293|consen 332 --------------------PDRTIIMWDLDGNI--LGNWEGVR----------DPKVHDLAITYDGKYVLLVTVDKKIR 379 (519)
T ss_pred --------------------CCCcEEEecCCcch--hhcccccc----------cceeEEEEEcCCCcEEEEEeccccee
Confidence 34555666665221 11111111 14799999999999777 45677799
Q ss_pred EEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeec
Q 037288 281 MVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFE 360 (513)
Q Consensus 281 vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~ 360 (513)
+++.++.........+.+|++++.+.|++++++--.+..+++||+..... ++.+.||+..-.-|.
T Consensus 380 l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~l---v~kY~Ghkq~~fiIr------------ 444 (519)
T KOG0293|consen 380 LYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKL---VRKYFGHKQGHFIIR------------ 444 (519)
T ss_pred eechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhH---HHHhhcccccceEEE------------
Confidence 99999887776777888999999999999999999999999999996654 558888865432211
Q ss_pred ccCcccceeEeecCCCceEEEEEc-CCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCC-CCEEEE
Q 037288 361 LKANIWPSHTTFMPSSISCLQSLQ-LYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQS-ERFVMS 438 (513)
Q Consensus 361 ~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~-g~~l~s 438 (513)
.+|- .+..++++|+.|+.|+||+.. ...++.++.||...|.+ ++|+|. ...+|+
T Consensus 445 --------------------SCFgg~~~~fiaSGSED~kvyIWhr~--sgkll~~LsGHs~~vNc--VswNP~~p~m~AS 500 (519)
T KOG0293|consen 445 --------------------SCFGGGNDKFIASGSEDSKVYIWHRI--SGKLLAVLSGHSKTVNC--VSWNPADPEMFAS 500 (519)
T ss_pred --------------------eccCCCCcceEEecCCCceEEEEEcc--CCceeEeecCCcceeeE--EecCCCCHHHhhc
Confidence 0222 255789999999999999987 66699999999999888 999995 467899
Q ss_pred EeCCCcEEEEeCCC
Q 037288 439 GGEDCKLRIWSIRS 452 (513)
Q Consensus 439 g~~Dg~v~vwd~~~ 452 (513)
||.||+|+||....
T Consensus 501 asDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 501 ASDDGTIRIWGPSD 514 (519)
T ss_pred cCCCCeEEEecCCc
Confidence 99999999998753
No 109
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.81 E-value=1.5e-18 Score=164.19 Aligned_cols=246 Identities=13% Similarity=0.143 Sum_probs=194.0
Q ss_pred CCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeCC-eEEEEECCCCcEEEEee--e-CC
Q 037288 222 TGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNL-GAAMVDMETGMASWVCR--S-KS 297 (513)
Q Consensus 222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~-~i~vwd~~~~~~~~~~~--~-~~ 297 (513)
..||+.+|++..+... .|+.... ...-..-|.++.+.|||+.|++|+.. ++.|||+.......... . .-
T Consensus 438 GkgcVKVWdis~pg~k---~PvsqLd----cl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssap 510 (705)
T KOG0639|consen 438 GKGCVKVWDISQPGNK---SPVSQLD----CLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAP 510 (705)
T ss_pred CCCeEEEeeccCCCCC---Ccccccc----ccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcch
Confidence 3689999999877443 3333322 22345689999999999999998775 49999998776433333 2 23
Q ss_pred CeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccc
Q 037288 298 DILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWP 367 (513)
Q Consensus 298 ~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~ 367 (513)
...+++.+||.++.++++.||.|.|||+.+... ++.|.+|.+.+.||+.++ ++-+|+ ||++++....
T Consensus 511 aCyALa~spDakvcFsccsdGnI~vwDLhnq~~---VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlq 587 (705)
T KOG0639|consen 511 ACYALAISPDAKVCFSCCSDGNIAVWDLHNQTL---VRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQ 587 (705)
T ss_pred hhhhhhcCCccceeeeeccCCcEEEEEccccee---eecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhh
Confidence 478999999999999999999999999998876 669999999999999997 777876 9999876543
Q ss_pred eeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEE
Q 037288 368 SHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRI 447 (513)
Q Consensus 368 ~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~v 447 (513)
.+.+ .+.|.++ -+.|++.+|++|-.++.+.+-... ...-..+.-|...| +++.|.+.|+|+++.|.|+-+..
T Consensus 588 qhdF--~SQIfSL-g~cP~~dWlavGMens~vevlh~s---kp~kyqlhlheScV--LSlKFa~cGkwfvStGkDnlLna 659 (705)
T KOG0639|consen 588 QHDF--SSQIFSL-GYCPTGDWLAVGMENSNVEVLHTS---KPEKYQLHLHESCV--LSLKFAYCGKWFVSTGKDNLLNA 659 (705)
T ss_pred hhhh--hhhheec-ccCCCccceeeecccCcEEEEecC---CccceeecccccEE--EEEEecccCceeeecCchhhhhh
Confidence 3222 3455554 567899999999999999888864 22333455577666 45889999999999999999999
Q ss_pred EeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288 448 WSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIH 486 (513)
Q Consensus 448 wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~ 486 (513)
|.+.-|..++..+. .++|.++..+-+..+++|.+++-+
T Consensus 660 wrtPyGasiFqskE-~SsVlsCDIS~ddkyIVTGSGdkk 697 (705)
T KOG0639|consen 660 WRTPYGASIFQSKE-SSSVLSCDISFDDKYIVTGSGDKK 697 (705)
T ss_pred ccCccccceeeccc-cCcceeeeeccCceEEEecCCCcc
Confidence 99999998888775 567999999999999999999855
No 110
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.81 E-value=2.9e-18 Score=168.44 Aligned_cols=189 Identities=17% Similarity=0.153 Sum_probs=155.2
Q ss_pred eeEEeccccCcEEEEEEcCCCCEEEEE-eCCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECC
Q 037288 248 TMHLVASFKCTVWTADFCTNPSQAVIG-TNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVR 326 (513)
Q Consensus 248 ~~~~~~~h~~~V~~~~~s~~g~~l~s~-s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~ 326 (513)
++..+.+|+..|.|++...++. +++| -|.++++|-...-... ...|+..|+++++-|++ .+++|+.|.+|++|.-.
T Consensus 93 P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~~~-l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~ 169 (745)
T KOG0301|consen 93 PLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELVYS-LQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGG 169 (745)
T ss_pred chhhhhccccceeeeecCCcCc-eEecccccceEEecchhhhcc-cCCcchheeeeeecCCC-cEEeccCcceeeeccCC
Confidence 3567999999999999988888 5566 5788999987533222 34599999999999887 88999999999999663
Q ss_pred CCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCC
Q 037288 327 KRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRL 406 (513)
Q Consensus 327 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~ 406 (513)
+. ++++.+|.+.|+.+++ + ++..|++++.||.|++|++
T Consensus 170 --~~---l~tf~gHtD~VRgL~v---------------------------------l--~~~~flScsNDg~Ir~w~~-- 207 (745)
T KOG0301|consen 170 --TL---LKTFSGHTDCVRGLAV---------------------------------L--DDSHFLSCSNDGSIRLWDL-- 207 (745)
T ss_pred --ch---hhhhccchhheeeeEE---------------------------------e--cCCCeEeecCCceEEEEec--
Confidence 22 6699999999999665 1 3556899999999999998
Q ss_pred CCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288 407 TTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIH 486 (513)
Q Consensus 407 ~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~ 486 (513)
...++..+.||++.+++ ++...++..++++|+|++++||+.. ++.+.+......|+++++-+++.+++.++.+.-
T Consensus 208 -~ge~l~~~~ghtn~vYs--is~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~V 282 (745)
T KOG0301|consen 208 -DGEVLLEMHGHTNFVYS--ISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRV 282 (745)
T ss_pred -cCceeeeeeccceEEEE--EEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCCEEEeccCceE
Confidence 56799999999999988 5556778899999999999999976 888888877778999999988777666666555
No 111
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.81 E-value=9.3e-18 Score=148.77 Aligned_cols=240 Identities=12% Similarity=0.134 Sum_probs=170.5
Q ss_pred cCCCcccceeeeeccccCCC---ccEEEEecCCCCCCCCCcccccCceeEEec-cccCcEEEEEEcCCCCEEEEEeCCeE
Q 037288 204 TDGGSVRHALITSLGSETTG---GSIYALNLDNPLDIGPNFSIIRRSTMHLVA-SFKCTVWTADFCTNPSQAVIGTNLGA 279 (513)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~~~~s~~g~~l~s~s~~~i 279 (513)
+++|..+.++.+.+...... -+..+|.+..+.......++ +++..+. .+-+.|.|+.|.|++..+++-.+..|
T Consensus 70 as~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tl---E~v~~Ldteavg~i~cvew~Pns~klasm~dn~i 146 (370)
T KOG1007|consen 70 ASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTL---ECVASLDTEAVGKINCVEWEPNSDKLASMDDNNI 146 (370)
T ss_pred hcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchh---hHhhcCCHHHhCceeeEEEcCCCCeeEEeccCce
Confidence 34555555555444322222 34555666644333111111 1222233 45569999999999999999899999
Q ss_pred EEEECCCCcE-EEEee------eCCCeEEEEEec--CCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeC
Q 037288 280 AMVDMETGMA-SWVCR------SKSDILAQQVIH--SGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRN 350 (513)
Q Consensus 280 ~vwd~~~~~~-~~~~~------~~~~V~~l~~~~--~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~ 350 (513)
.+|++..+.. +..+. +....++-+|+| ||+.+++. .|+++..||+|+.+.. ...-.+|...|..++|+
T Consensus 147 ~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~--~sI~dAHgq~vrdlDfN 223 (370)
T KOG1007|consen 147 VLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKN--NSIEDAHGQRVRDLDFN 223 (370)
T ss_pred EEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhh--cchhhhhcceeeeccCC
Confidence 9999987764 22221 344578889998 67888776 5899999999987653 23445788888888886
Q ss_pred CeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCcc-ceEEecCCCCceeEEEEEE
Q 037288 351 DRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRG-AVQSYEGHVNSHTRIQLGV 429 (513)
Q Consensus 351 ~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~-~~~~~~~h~~~v~~~~~~~ 429 (513)
| ....+|++|+.||.|++||.| ... +++++.+|...|.+ +.|
T Consensus 224 p---------------------------------nkq~~lvt~gDdgyvriWD~R--~tk~pv~el~~HsHWvW~--VRf 266 (370)
T KOG1007|consen 224 P---------------------------------NKQHILVTCGDDGYVRIWDTR--KTKFPVQELPGHSHWVWA--VRF 266 (370)
T ss_pred C---------------------------------CceEEEEEcCCCccEEEEecc--CCCccccccCCCceEEEE--EEe
Confidence 6 245678999999999999999 444 99999999988866 888
Q ss_pred cCC-CCEEEEEeCCCcEEEEeCCCC-----------------------------eEEEEecCCCCCeEEEEEcCC-CceE
Q 037288 430 DQS-ERFVMSGGEDCKLRIWSIRSG-----------------------------ELVFEDKFSNSVPSAVCWRTQ-RSMG 478 (513)
Q Consensus 430 s~~-g~~l~sg~~Dg~v~vwd~~~~-----------------------------~~~~~~~~~~~~v~~v~~~p~-~~~~ 478 (513)
+|. +.+|++||.|..|.+|...+- -++.++..|+..|.+++|+.. +.+|
T Consensus 267 n~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiF 346 (370)
T KOG1007|consen 267 NPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIF 346 (370)
T ss_pred cCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeE
Confidence 885 678999999999999965311 133456778889999999976 7888
Q ss_pred EeeCCCee
Q 037288 479 PQIEGKIH 486 (513)
Q Consensus 479 ~t~~~~~~ 486 (513)
|+-+-|-.
T Consensus 347 ASLSYDGR 354 (370)
T KOG1007|consen 347 ASLSYDGR 354 (370)
T ss_pred EEeccCce
Confidence 88765543
No 112
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.81 E-value=2.2e-18 Score=175.08 Aligned_cols=217 Identities=16% Similarity=0.210 Sum_probs=176.6
Q ss_pred ecc-ccCcEEEEEEcCCCCEEEEEeC-CeEEEEECCCCcEEEE--eeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCC
Q 037288 252 VAS-FKCTVWTADFCTNPSQAVIGTN-LGAAMVDMETGMASWV--CRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRK 327 (513)
Q Consensus 252 ~~~-h~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~~~~~~--~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~ 327 (513)
+.+ |...+.+..|+ ..++.++++ .+|++||..++..+.. ..|.+.|.++++..-+.++++|+.|.++++||..+
T Consensus 203 ~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~s 280 (537)
T KOG0274|consen 203 LLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCST 280 (537)
T ss_pred ecccCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCC
Confidence 444 56678888887 456666655 5588999999986655 44889999999987679999999999999999999
Q ss_pred CccccccccccccCcCeEEEeeCC-eEEEeE-------eecccCcccceeEee-cCCCceEEEEEcCCCCEEEEEecCCe
Q 037288 328 RQRGCSSRAGRRHRIPYSRLQRND-RVTNEQ-------WFELKANIWPSHTTF-MPSSISCLQSLQLYDQYFLASSMDGT 398 (513)
Q Consensus 328 ~~~~~~~~~~~~h~~~v~~v~~~~-~~~s~~-------w~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~s~dg~ 398 (513)
+.... .+.+|...|.+++..+ .+++|+ |++..+... .++. |..+|.++.. ++.++++|+.|++
T Consensus 281 g~C~~---~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l--~l~~~h~~~V~~v~~---~~~~lvsgs~d~~ 352 (537)
T KOG0274|consen 281 GECTH---SLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACL--NLLRGHTGPVNCVQL---DEPLLVSGSYDGT 352 (537)
T ss_pred CcEEE---EecCCCceEEEEEccCceEeeccCCceEEEEeccCcceE--EEeccccccEEEEEe---cCCEEEEEecCce
Confidence 98854 8999999999999999 666655 888877654 3444 7788888744 4899999999999
Q ss_pred EEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-eEEEEecCCCCCeEEEEEcCCCce
Q 037288 399 VKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSG-ELVFEDKFSNSVPSAVCWRTQRSM 477 (513)
Q Consensus 399 i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~-~~~~~~~~~~~~v~~v~~~p~~~~ 477 (513)
|++||++ ..+++.++.+|...|++ +.+++. ..+++|+.|++|++||+.+. +++.++.+|.+.+..+.+..+ +
T Consensus 353 v~VW~~~--~~~cl~sl~gH~~~V~s--l~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~--~ 425 (537)
T KOG0274|consen 353 VKVWDPR--TGKCLKSLSGHTGRVYS--LIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRDN--F 425 (537)
T ss_pred EEEEEhh--hceeeeeecCCcceEEE--EEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccccc--e
Confidence 9999998 56699999999999988 566554 89999999999999999999 999999999988866655544 5
Q ss_pred EEeeCCCe
Q 037288 478 GPQIEGKI 485 (513)
Q Consensus 478 ~~t~~~~~ 485 (513)
+++++.|-
T Consensus 426 Lvs~~aD~ 433 (537)
T KOG0274|consen 426 LVSSSADG 433 (537)
T ss_pred eEeccccc
Confidence 55555443
No 113
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.80 E-value=2.6e-18 Score=153.59 Aligned_cols=168 Identities=18% Similarity=0.212 Sum_probs=135.9
Q ss_pred eeEEeccccCcEEEEEEcCCCCEEEEEeC-CeEEEEECCCCcE---EEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEE
Q 037288 248 TMHLVASFKCTVWTADFCTNPSQAVIGTN-LGAAMVDMETGMA---SWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTV 323 (513)
Q Consensus 248 ~~~~~~~h~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~~~---~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iw 323 (513)
.+.++..|.+.|++++|+|....|++|+. ++|+++|+..... ...+....+|.++.|+|.|.+|++|..-.++++|
T Consensus 164 vIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlY 243 (430)
T KOG0640|consen 164 VIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLY 243 (430)
T ss_pred eEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEE
Confidence 36778999999999999999999999975 5599999976532 2334456679999999999999999999999999
Q ss_pred ECCCCccccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEE
Q 037288 324 DVRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLAS 393 (513)
Q Consensus 324 d~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 393 (513)
|+.+.+.......-..|.+.|+++.+++ .+++++ ||...+++.....-.|.+.-.|...|..+++|++++
T Consensus 244 dv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsS 323 (430)
T KOG0640|consen 244 DVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSS 323 (430)
T ss_pred eccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeec
Confidence 9998876543445568999999999999 677777 888877766555556666666667899999999999
Q ss_pred ecCCeEEEEecCCCCccceEEecC
Q 037288 394 SMDGTVKLYDHRLTTRGAVQSYEG 417 (513)
Q Consensus 394 s~dg~i~lwd~~~~~~~~~~~~~~ 417 (513)
++|..+++|.+. ...++..|.|
T Consensus 324 G~DS~vkLWEi~--t~R~l~~YtG 345 (430)
T KOG0640|consen 324 GKDSTVKLWEIS--TGRMLKEYTG 345 (430)
T ss_pred CCcceeeeeeec--CCceEEEEec
Confidence 999999999996 3345655543
No 114
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.80 E-value=8.1e-18 Score=150.16 Aligned_cols=221 Identities=10% Similarity=0.051 Sum_probs=163.4
Q ss_pred ccCcEEEEEEcCC-CCEEEEE-eCCeEEEEECCC-CcEE--EEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCc
Q 037288 255 FKCTVWTADFCTN-PSQAVIG-TNLGAAMVDMET-GMAS--WVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQ 329 (513)
Q Consensus 255 h~~~V~~~~~s~~-g~~l~s~-s~~~i~vwd~~~-~~~~--~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~ 329 (513)
-.+.|.+++|||. ..++++| -|++||+|+++. |..+ ....|.++|++++|+.||..+++|+.|+.+++||+.+++
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q 105 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ 105 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC
Confidence 4478999999994 4455444 488899999986 3432 234488999999999999999999999999999999986
Q ss_pred cccccccccccCcCeEEEeeCC-----eEEEeEeeccc-----CcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeE
Q 037288 330 RGCSSRAGRRHRIPYSRLQRND-----RVTNEQWFELK-----ANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTV 399 (513)
Q Consensus 330 ~~~~~~~~~~h~~~v~~v~~~~-----~~~s~~w~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i 399 (513)
+..+..|..+|..+.|-+ .+++|+||..- ....+..++.+++.+.++-. ...+++++..+..|
T Consensus 106 ----~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv---~~pm~vVata~r~i 178 (347)
T KOG0647|consen 106 ----VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADV---LYPMAVVATAERHI 178 (347)
T ss_pred ----eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhc---cCceeEEEecCCcE
Confidence 557889999999999977 57888854321 13336677788888777633 35678899999999
Q ss_pred EEEecCCCCccceEEecCCCCce--eEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC--eEEEEecCCC---------CCe
Q 037288 400 KLYDHRLTTRGAVQSYEGHVNSH--TRIQLGVDQSERFVMSGGEDCKLRIWSIRSG--ELVFEDKFSN---------SVP 466 (513)
Q Consensus 400 ~lwd~~~~~~~~~~~~~~h~~~v--~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~--~~~~~~~~~~---------~~v 466 (513)
.+|+++.. ...++.+..+. ...+++..+|..-.+.|+-.|.+-|..+..+ +.-++++.|. ..|
T Consensus 179 ~vynL~n~----~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaV 254 (347)
T KOG0647|consen 179 AVYNLENP----PTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAV 254 (347)
T ss_pred EEEEcCCC----cchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEe
Confidence 99999621 12222222211 1123555566666699999999999999887 4444455553 258
Q ss_pred EEEEEcCCCceEEeeCCCee
Q 037288 467 SAVCWRTQRSMGPQIEGKIH 486 (513)
Q Consensus 467 ~~v~~~p~~~~~~t~~~~~~ 486 (513)
++++|+|..-.|+|.++|-.
T Consensus 255 Nsi~FhP~hgtlvTaGsDGt 274 (347)
T KOG0647|consen 255 NSIAFHPVHGTLVTAGSDGT 274 (347)
T ss_pred cceEeecccceEEEecCCce
Confidence 89999999888888888866
No 115
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=1.4e-17 Score=155.86 Aligned_cols=222 Identities=15% Similarity=0.148 Sum_probs=160.4
Q ss_pred CccEEEEecCCCCCCCCCccccc---------CceeEEeccccCcEEEEEEcCCCC-EEEEEe-CCeEEEEECCCCcEEE
Q 037288 223 GGSIYALNLDNPLDIGPNFSIIR---------RSTMHLVASFKCTVWTADFCTNPS-QAVIGT-NLGAAMVDMETGMASW 291 (513)
Q Consensus 223 ~g~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~h~~~V~~~~~s~~g~-~l~s~s-~~~i~vwd~~~~~~~~ 291 (513)
+-.|-+|+++-.+.++....+.. ...-..-.+|++.|.+++|+.+-+ .||+|+ |.+|++||+.++++..
T Consensus 201 dp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~ 280 (463)
T KOG0270|consen 201 DPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKS 280 (463)
T ss_pred CceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcce
Confidence 45777888876555443333221 011223457999999999998655 677775 6679999999999998
Q ss_pred Eee-eCCCeEEEEEecCC-cEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCccccee
Q 037288 292 VCR-SKSDILAQQVIHSG-NVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSH 369 (513)
Q Consensus 292 ~~~-~~~~V~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~ 369 (513)
++. |...|.+++|+|.. .+|++|+.|++|.+.|.|..... ..
T Consensus 281 s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s------------------------------------~~ 324 (463)
T KOG0270|consen 281 SITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNS------------------------------------GK 324 (463)
T ss_pred ehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcccc------------------------------------Cc
Confidence 888 66679999999965 89999999999999999974331 12
Q ss_pred EeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCc-cceEEecCCCCceeEEEEEEcCC-CCEEEEEeCCCcEEE
Q 037288 370 TTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTR-GAVQSYEGHVNSHTRIQLGVDQS-ERFVMSGGEDCKLRI 447 (513)
Q Consensus 370 ~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~-~~~~~~~~h~~~v~~~~~~~s~~-g~~l~sg~~Dg~v~v 447 (513)
.++..+.|..+.+-......|++++.||.|+-+|+| +. .++.++++|.++|.+ +++++. ..+|++++.|+.|++
T Consensus 325 ~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R--~~~~~vwt~~AHd~~ISg--l~~n~~~p~~l~t~s~d~~Vkl 400 (463)
T KOG0270|consen 325 EWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIR--NPGKPVWTLKAHDDEISG--LSVNIQTPGLLSTASTDKVVKL 400 (463)
T ss_pred eEEeccceEEEEecCCCceeEEEecCCceEEeeecC--CCCCceeEEEeccCCcce--EEecCCCCcceeeccccceEEE
Confidence 333444555555555667889999999999999999 44 499999999999998 555553 568899999999999
Q ss_pred EeCCCCeE--EEEecCCCCCeEEEEEcCC-CceEEeeCCC
Q 037288 448 WSIRSGEL--VFEDKFSNSVPSAVCWRTQ-RSMGPQIEGK 484 (513)
Q Consensus 448 wd~~~~~~--~~~~~~~~~~v~~v~~~p~-~~~~~t~~~~ 484 (513)
|++..-.. +..-...-+...+.++.|+ ..++|.++..
T Consensus 401 w~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k 440 (463)
T KOG0270|consen 401 WKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEK 440 (463)
T ss_pred EeecCCCCcccccccccccceeecccCCCcceEEEecCcc
Confidence 99875443 3332222344677788888 4445544444
No 116
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=6.4e-18 Score=151.63 Aligned_cols=223 Identities=10% Similarity=0.078 Sum_probs=170.2
Q ss_pred eEEeccccCcEEEEEEcCCCCEEEEE-eCCeEEEEECCCCcEEEE-eeeCCCeEEEEEecCC--cEEEEEeCCCeEEEEE
Q 037288 249 MHLVASFKCTVWTADFCTNPSQAVIG-TNLGAAMVDMETGMASWV-CRSKSDILAQQVIHSG--NVVLCGFRNGAIVTVD 324 (513)
Q Consensus 249 ~~~~~~h~~~V~~~~~s~~g~~l~s~-s~~~i~vwd~~~~~~~~~-~~~~~~V~~l~~~~~~--~~l~sg~~dg~i~iwd 324 (513)
++.+.+|..++.+++. ++.++|+| +|++|+|||+.+...+.. +.|.+.|+++.|.+.- +.|++|+.||.|.+|+
T Consensus 36 lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~ 113 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWR 113 (362)
T ss_pred cccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEE
Confidence 4568899999999998 68999988 567799999998875544 4588889999999876 4899999999999999
Q ss_pred CCCCccccccccccccCcCeEEEeeCC----eEEEeE------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEe
Q 037288 325 VRKRQRGCSSRAGRRHRIPYSRLQRND----RVTNEQ------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASS 394 (513)
Q Consensus 325 ~~~~~~~~~~~~~~~h~~~v~~v~~~~----~~~s~~------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s 394 (513)
...... +..+.+|.+.|+.++.+| .+..|. |++..++.-....+.+ ... ++.|+|.|.+|+.+.
T Consensus 114 ~~~W~~---~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~--~at-~v~w~~~Gd~F~v~~ 187 (362)
T KOG0294|consen 114 VGSWEL---LKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN--KAT-LVSWSPQGDHFVVSG 187 (362)
T ss_pred cCCeEE---eeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC--cce-eeEEcCCCCEEEEEe
Confidence 988755 669999999999999999 233333 9988877543333332 222 257789999999988
Q ss_pred cCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEc--
Q 037288 395 MDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWR-- 472 (513)
Q Consensus 395 ~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~-- 472 (513)
.+ .|-+|.+. .......+.. +...+++.| -++..|++|+.|+.|.+||..+..++..+..|...|-++.+-
T Consensus 188 ~~-~i~i~q~d--~A~v~~~i~~---~~r~l~~~~-l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~ 260 (362)
T KOG0294|consen 188 RN-KIDIYQLD--NASVFREIEN---PKRILCATF-LDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTN 260 (362)
T ss_pred cc-EEEEEecc--cHhHhhhhhc---cccceeeee-cCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEec
Confidence 77 68899885 3223333321 122233444 357789999999999999999999999999999999999853
Q ss_pred CCCceEEeeCCCee
Q 037288 473 TQRSMGPQIEGKIH 486 (513)
Q Consensus 473 p~~~~~~t~~~~~~ 486 (513)
|.+.+++|.+.|-.
T Consensus 261 ~~~~~lvTaSSDG~ 274 (362)
T KOG0294|consen 261 PEHEYLVTASSDGF 274 (362)
T ss_pred CCceEEEEeccCce
Confidence 44677777766654
No 117
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.80 E-value=6.9e-18 Score=158.53 Aligned_cols=227 Identities=13% Similarity=0.134 Sum_probs=180.1
Q ss_pred eEEeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEE----EE---------------eeeCCCeEEEEEecCC
Q 037288 249 MHLVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMAS----WV---------------CRSKSDILAQQVIHSG 308 (513)
Q Consensus 249 ~~~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~----~~---------------~~~~~~V~~l~~~~~~ 308 (513)
+..+..|.-+|.+++++|+..+..+++ +++|.-|++.++... .. ..|...+.+++.++||
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 455788999999999999999988875 556888999887622 00 1355679999999999
Q ss_pred cEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeEeecCCCce
Q 037288 309 NVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTFMPSSIS 378 (513)
Q Consensus 309 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~~~~~v~ 378 (513)
++|++|+.|..|.|||.++.+. ++.+.+|.+.|.+++|-. .+++++ |.+...... ...+.|++.|.
T Consensus 215 kylatgg~d~~v~Iw~~~t~eh---v~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~v-etlyGHqd~v~ 290 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEH---VKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYV-ETLYGHQDGVL 290 (479)
T ss_pred cEEEecCCCceEEEecCcccch---hhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHH-HHHhCCcccee
Confidence 9999999999999999999987 458999999999999976 777776 776544332 23455677888
Q ss_pred EEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEE
Q 037288 379 CLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFE 458 (513)
Q Consensus 379 ~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~ 458 (513)
.+-+++ -++.+-+|+.|.++++|++. ......|.+|.+.+.+ ++|- +..++++|+.||.|.+|++...+++++
T Consensus 291 ~IdaL~-reR~vtVGgrDrT~rlwKi~---eesqlifrg~~~sidc--v~~I-n~~HfvsGSdnG~IaLWs~~KKkplf~ 363 (479)
T KOG0299|consen 291 GIDALS-RERCVTVGGRDRTVRLWKIP---EESQLIFRGGEGSIDC--VAFI-NDEHFVSGSDNGSIALWSLLKKKPLFT 363 (479)
T ss_pred eechhc-ccceEEeccccceeEEEecc---ccceeeeeCCCCCeee--EEEe-cccceeeccCCceEEEeeecccCceeE
Confidence 876665 56777778899999999993 4445568889888877 5553 456899999999999999999999988
Q ss_pred ec-CC-----------CCCeEEEEEcCCCceEEeeCCCee
Q 037288 459 DK-FS-----------NSVPSAVCWRTQRSMGPQIEGKIH 486 (513)
Q Consensus 459 ~~-~~-----------~~~v~~v~~~p~~~~~~t~~~~~~ 486 (513)
.. .| ..+|++++-.|...++|+++.+-+
T Consensus 364 ~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~ 403 (479)
T KOG0299|consen 364 SRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGC 403 (479)
T ss_pred eeccccccCCccccccccceeeeEecccCceEEecCCCCc
Confidence 53 12 127899999999999999986655
No 118
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.80 E-value=1.4e-18 Score=158.41 Aligned_cols=244 Identities=13% Similarity=0.045 Sum_probs=191.7
Q ss_pred ccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEeeeC
Q 037288 217 LGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCRSK 296 (513)
Q Consensus 217 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~~~ 296 (513)
+.++..+|.+.+|++.+. .++.++..|.+.|..+++.. +..+.+|.|.+|+.|-++. .+..++..+
T Consensus 82 ~aSGs~DG~VkiWnlsqR------------~~~~~f~AH~G~V~Gi~v~~-~~~~tvgdDKtvK~wk~~~-~p~~tilg~ 147 (433)
T KOG0268|consen 82 VASGSCDGEVKIWNLSQR------------ECIRTFKAHEGLVRGICVTQ-TSFFTVGDDKTVKQWKIDG-PPLHTILGK 147 (433)
T ss_pred hhccccCceEEEEehhhh------------hhhheeecccCceeeEEecc-cceEEecCCcceeeeeccC-Ccceeeecc
Confidence 345678899988887633 34566999999999999987 6667677788899999875 577778888
Q ss_pred CCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCC---eEEEeE--------eecccCcc
Q 037288 297 SDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ--------WFELKANI 365 (513)
Q Consensus 297 ~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~--------w~~~~~~~ 365 (513)
+.+..++-+..++.++++|. .|.|||..-..+ ++.+.--...|.++.|+| .++.++ +|.+.+..
T Consensus 148 s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~P---v~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~P 222 (433)
T KOG0268|consen 148 SVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNP---VSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASP 222 (433)
T ss_pred ccccccccccccccccccCc--eeeecccccCCc---cceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCc
Confidence 88999998888889999875 599999976665 558888888999999999 444333 88888775
Q ss_pred cceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCcc-ceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCc
Q 037288 366 WPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRG-AVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCK 444 (513)
Q Consensus 366 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~-~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~ 444 (513)
.....+.+ .-.. .+|+|++-.|++|+.|..++.||+| ... ++..+.+|.+.|.. ++|+|.|+-+++||.|.+
T Consensus 223 l~KVi~~m--RTN~-IswnPeafnF~~a~ED~nlY~~DmR--~l~~p~~v~~dhvsAV~d--VdfsptG~EfvsgsyDks 295 (433)
T KOG0268|consen 223 LKKVILTM--RTNT-ICWNPEAFNFVAANEDHNLYTYDMR--NLSRPLNVHKDHVSAVMD--VDFSPTGQEFVSGSYDKS 295 (433)
T ss_pred cceeeeec--cccc-eecCccccceeeccccccceehhhh--hhcccchhhcccceeEEE--eccCCCcchhccccccce
Confidence 54333333 2222 4678899999999999999999999 433 88899999998755 999999999999999999
Q ss_pred EEEEeCCCCeEEEEec-CCCCCeEEEEEcCCCceEEeeCCCee
Q 037288 445 LRIWSIRSGELVFEDK-FSNSVPSAVCWRTQRSMGPQIEGKIH 486 (513)
Q Consensus 445 v~vwd~~~~~~~~~~~-~~~~~v~~v~~~p~~~~~~t~~~~~~ 486 (513)
|+||.+..++---.+- -....|.+|.|+.+..++++++.+-.
T Consensus 296 IRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~n 338 (433)
T KOG0268|consen 296 IRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGN 338 (433)
T ss_pred EEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcc
Confidence 9999998876443321 12355999999999888887776644
No 119
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.80 E-value=3.1e-18 Score=176.55 Aligned_cols=203 Identities=10% Similarity=0.135 Sum_probs=150.2
Q ss_pred cCcEEEEEEcCCCCEEEEEe---CCeEEEEECCCC------------cEEE-EeeeCCCeEEEEEecCCcEEEEEeCCCe
Q 037288 256 KCTVWTADFCTNPSQAVIGT---NLGAAMVDMETG------------MASW-VCRSKSDILAQQVIHSGNVVLCGFRNGA 319 (513)
Q Consensus 256 ~~~V~~~~~s~~g~~l~s~s---~~~i~vwd~~~~------------~~~~-~~~~~~~V~~l~~~~~~~~l~sg~~dg~ 319 (513)
+..|.+++.+|+|..+|+|+ |++++||+.+.- +.+. ...|.+.|.|+.|+|||.+||+|+.|+.
T Consensus 13 ~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~ 92 (942)
T KOG0973|consen 13 EKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRL 92 (942)
T ss_pred CeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcce
Confidence 45799999999999999987 566889976421 1122 2238889999999999999999999999
Q ss_pred EEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCccccee-EeecCCCceEEEEEcCCCCEEEEEecCCe
Q 037288 320 IVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSH-TTFMPSSISCLQSLQLYDQYFLASSMDGT 398 (513)
Q Consensus 320 i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~s~s~dg~ 398 (513)
|.||+........ +..-.+-...+.. | +... ...|+..|..+ .|+|++.+|++++.|++
T Consensus 93 v~iW~~~~~~~~~-~fgs~g~~~~vE~-----------w-------k~~~~l~~H~~DV~Dv-~Wsp~~~~lvS~s~Dns 152 (942)
T KOG0973|consen 93 VMIWERAEIGSGT-VFGSTGGAKNVES-----------W-------KVVSILRGHDSDVLDV-NWSPDDSLLVSVSLDNS 152 (942)
T ss_pred EEEeeecccCCcc-cccccccccccce-----------e-------eEEEEEecCCCcccee-ccCCCccEEEEecccce
Confidence 9999987411000 0000000000000 0 0011 11244455554 67889999999999999
Q ss_pred EEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCC------CCCeEEEEEc
Q 037288 399 VKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFS------NSVPSAVCWR 472 (513)
Q Consensus 399 i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~------~~~v~~v~~~ 472 (513)
|.+||.+ ....+..+++|...|.. +.|+|-|+||++=+.|++|+||++.+....+.+..+ ..-+..+.|+
T Consensus 153 Viiwn~~--tF~~~~vl~~H~s~VKG--vs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWS 228 (942)
T KOG0973|consen 153 VIIWNAK--TFELLKVLRGHQSLVKG--VSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWS 228 (942)
T ss_pred EEEEccc--cceeeeeeecccccccc--eEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccC
Confidence 9999998 55689999999999988 999999999999999999999998887777765433 3357889999
Q ss_pred CCCceEEeeC
Q 037288 473 TQRSMGPQIE 482 (513)
Q Consensus 473 p~~~~~~t~~ 482 (513)
|++.++++..
T Consensus 229 PDG~~las~n 238 (942)
T KOG0973|consen 229 PDGHHLASPN 238 (942)
T ss_pred CCcCeecchh
Confidence 9999888765
No 120
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=1.3e-18 Score=150.76 Aligned_cols=199 Identities=12% Similarity=0.106 Sum_probs=160.6
Q ss_pred eccccCcEEEEEEcCCCCEEEEE-eCCeEEEEECCCCcE---E-EEeeeCCCeEEEEEec--CCcEEEEEeCCCeEEEEE
Q 037288 252 VASFKCTVWTADFCTNPSQAVIG-TNLGAAMVDMETGMA---S-WVCRSKSDILAQQVIH--SGNVVLCGFRNGAIVTVD 324 (513)
Q Consensus 252 ~~~h~~~V~~~~~s~~g~~l~s~-s~~~i~vwd~~~~~~---~-~~~~~~~~V~~l~~~~--~~~~l~sg~~dg~i~iwd 324 (513)
-..|.+.|.++...--|..||++ +|++|+|+.++.+.. + .+..|.++|.-++|.. .|.+||+++.||.|.||.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 45788999998888889999987 566799999876542 2 2334999999999986 789999999999999999
Q ss_pred CCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEec
Q 037288 325 VRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDH 404 (513)
Q Consensus 325 ~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~ 404 (513)
-.+++... ......|...|++|+|.| +..|-.|++++.||.|.+.+.
T Consensus 87 e~~g~w~k-~~e~~~h~~SVNsV~wap--------------------------------heygl~LacasSDG~vsvl~~ 133 (299)
T KOG1332|consen 87 EENGRWTK-AYEHAAHSASVNSVAWAP--------------------------------HEYGLLLACASSDGKVSVLTY 133 (299)
T ss_pred cCCCchhh-hhhhhhhcccceeecccc--------------------------------cccceEEEEeeCCCcEEEEEE
Confidence 98887655 667788999999988854 345778999999999999999
Q ss_pred CCCCcc--ceEEecCCCCceeEEEEEEcCC---C-----------CEEEEEeCCCcEEEEeCCCCe--EEEEecCCCCCe
Q 037288 405 RLTTRG--AVQSYEGHVNSHTRIQLGVDQS---E-----------RFVMSGGEDCKLRIWSIRSGE--LVFEDKFSNSVP 466 (513)
Q Consensus 405 ~~~~~~--~~~~~~~h~~~v~~~~~~~s~~---g-----------~~l~sg~~Dg~v~vwd~~~~~--~~~~~~~~~~~v 466 (513)
+.. .. ..+....|.-.|.. ++|.|. | +.|++||.|..|+||+..+++ .-.++..|...|
T Consensus 134 ~~~-g~w~t~ki~~aH~~Gvns--Vswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwV 210 (299)
T KOG1332|consen 134 DSS-GGWTTSKIVFAHEIGVNS--VSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWV 210 (299)
T ss_pred cCC-CCccchhhhhccccccce--eeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhh
Confidence 832 12 34455789888877 777774 4 569999999999999998864 334488999999
Q ss_pred EEEEEcCC----CceEEeeCCCee
Q 037288 467 SAVCWRTQ----RSMGPQIEGKIH 486 (513)
Q Consensus 467 ~~v~~~p~----~~~~~t~~~~~~ 486 (513)
+.++|.|. ...+|+++.|-.
T Consensus 211 RDVAwaP~~gl~~s~iAS~SqDg~ 234 (299)
T KOG1332|consen 211 RDVAWAPSVGLPKSTIASCSQDGT 234 (299)
T ss_pred hhhhhccccCCCceeeEEecCCCc
Confidence 99999998 357888888766
No 121
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.79 E-value=2.4e-18 Score=162.91 Aligned_cols=197 Identities=11% Similarity=0.140 Sum_probs=153.9
Q ss_pred EeccccCcEEEEEEcCCCCEEEEEeCCeEEEEECCCCc---EEEEe---eeCCCeEEEEEecCCcEEEEEeCCCeEEEEE
Q 037288 251 LVASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMETGM---ASWVC---RSKSDILAQQVIHSGNVVLCGFRNGAIVTVD 324 (513)
Q Consensus 251 ~~~~h~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~---~~~~~---~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd 324 (513)
....|..-|.+++++...+.+.+|+.+.|+|||+.... ++..+ ....-|.++...|||+.|++|+.-.++.|||
T Consensus 414 ~tL~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWD 493 (705)
T KOG0639|consen 414 NTLAHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWD 493 (705)
T ss_pred hhhccCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeee
Confidence 45679999999999999999999999999999997542 23222 2445699999999999999999999999999
Q ss_pred CCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEec
Q 037288 325 VRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDH 404 (513)
Q Consensus 325 ~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~ 404 (513)
+....... -..+....-. +-..+.+||.+...++..||.|.|||+
T Consensus 494 LAapTpri-kaeltssapa----------------------------------CyALa~spDakvcFsccsdGnI~vwDL 538 (705)
T KOG0639|consen 494 LAAPTPRI-KAELTSSAPA----------------------------------CYALAISPDAKVCFSCCSDGNIAVWDL 538 (705)
T ss_pred ccCCCcch-hhhcCCcchh----------------------------------hhhhhcCCccceeeeeccCCcEEEEEc
Confidence 98775421 0011111111 112467889999999999999999999
Q ss_pred CCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEE--------------------------
Q 037288 405 RLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFE-------------------------- 458 (513)
Q Consensus 405 ~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~-------------------------- 458 (513)
+ ....++.|+||.+...+ +.+++||..|.+||.|++|+.||++++..+..
T Consensus 539 h--nq~~VrqfqGhtDGasc--Idis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens 614 (705)
T KOG0639|consen 539 H--NQTLVRQFQGHTDGASC--IDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENS 614 (705)
T ss_pred c--cceeeecccCCCCCcee--EEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccC
Confidence 8 55589999999999988 78899999999999999999999987653321
Q ss_pred --------------ecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288 459 --------------DKFSNSVPSAVCWRTQRSMGPQIEGKIH 486 (513)
Q Consensus 459 --------------~~~~~~~v~~v~~~p~~~~~~t~~~~~~ 486 (513)
+..|++.|.++.|.+.+..|++.+.|-.
T Consensus 615 ~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnl 656 (705)
T KOG0639|consen 615 NVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNL 656 (705)
T ss_pred cEEEEecCCccceeecccccEEEEEEecccCceeeecCchhh
Confidence 2334677888888888888888777744
No 122
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.79 E-value=2.6e-17 Score=155.70 Aligned_cols=209 Identities=13% Similarity=0.155 Sum_probs=166.1
Q ss_pred ccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeCCe-EEEEECCCCcEEEEeeeCC
Q 037288 219 SETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNLG-AAMVDMETGMASWVCRSKS 297 (513)
Q Consensus 219 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~~-i~vwd~~~~~~~~~~~~~~ 297 (513)
++...|++.+|++... -+...+.+|+..|+++.++....+||++++++ |.|..+.++.....+.+.+
T Consensus 96 sgG~~~~Vkiwdl~~k------------l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~s 163 (673)
T KOG4378|consen 96 SGGQSGCVKIWDLRAK------------LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDS 163 (673)
T ss_pred ccCcCceeeehhhHHH------------HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCC
Confidence 4456677777776622 22345889999999999999999999999887 9999999998777777663
Q ss_pred -C-eEEEEEecCC-cEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecC
Q 037288 298 -D-ILAQQVIHSG-NVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMP 374 (513)
Q Consensus 298 -~-V~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~ 374 (513)
. |.-+.|++.. .+|.+++.+|.|.+||+....+. +.-...|..|...|+|+|
T Consensus 164 gqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~--~~~~~~HsAP~~gicfsp----------------------- 218 (673)
T KOG4378|consen 164 GQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPI--FHASEAHSAPCRGICFSP----------------------- 218 (673)
T ss_pred CCeEEEeecccccceeeEeeccCCeEEEEeccCCCcc--cchhhhccCCcCcceecC-----------------------
Confidence 3 7789999977 57888899999999999877654 345677888888877755
Q ss_pred CCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-C
Q 037288 375 SSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRS-G 453 (513)
Q Consensus 375 ~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~-~ 453 (513)
.+..+|++.++|..|.+||++ .......+. ...+... ++|.++|.+|++|...|.|..||++. .
T Consensus 219 ----------sne~l~vsVG~Dkki~~yD~~--s~~s~~~l~-y~~Plst--vaf~~~G~~L~aG~s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 219 ----------SNEALLVSVGYDKKINIYDIR--SQASTDRLT-YSHPLST--VAFSECGTYLCAGNSKGELIAYDMRSTK 283 (673)
T ss_pred ----------CccceEEEecccceEEEeecc--cccccceee-ecCCcce--eeecCCceEEEeecCCceEEEEecccCC
Confidence 367788999999999999998 444444443 2223334 89999999999999999999999986 4
Q ss_pred eEEEEecCCCCCeEEEEEcCCCceEE
Q 037288 454 ELVFEDKFSNSVPSAVCWRTQRSMGP 479 (513)
Q Consensus 454 ~~~~~~~~~~~~v~~v~~~p~~~~~~ 479 (513)
.++.++..|...|++++|-|...++.
T Consensus 284 ~Pv~v~sah~~sVt~vafq~s~tvlt 309 (673)
T KOG4378|consen 284 APVAVRSAHDASVTRVAFQPSPTVLT 309 (673)
T ss_pred CCceEeeecccceeEEEeeecceeee
Confidence 58888889999999999998874443
No 123
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=3.1e-18 Score=166.96 Aligned_cols=198 Identities=18% Similarity=0.156 Sum_probs=159.3
Q ss_pred eeEEeccccCcEEEEEE-cCCCCEEEEEe-CCeEEEEECCCCcE--EEEe----------eeCCCeEEEEEecCCcEEEE
Q 037288 248 TMHLVASFKCTVWTADF-CTNPSQAVIGT-NLGAAMVDMETGMA--SWVC----------RSKSDILAQQVIHSGNVVLC 313 (513)
Q Consensus 248 ~~~~~~~h~~~V~~~~~-s~~g~~l~s~s-~~~i~vwd~~~~~~--~~~~----------~~~~~V~~l~~~~~~~~l~s 313 (513)
++.++..|++-|.|+++ -++..++|+|+ |+.|.+||++++.. +..+ ++...|++++-++.|.+|++
T Consensus 109 c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivs 188 (735)
T KOG0308|consen 109 CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVS 188 (735)
T ss_pred hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEe
Confidence 56779999999999999 77888888886 55699999998732 1111 35667999999999999999
Q ss_pred EeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEE
Q 037288 314 GFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLAS 393 (513)
Q Consensus 314 g~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 393 (513)
|+..+.+++||.++.+... .+.||+..|..+ ..+.+|..++++
T Consensus 189 Ggtek~lr~wDprt~~kim---kLrGHTdNVr~l----------------------------------l~~dDGt~~ls~ 231 (735)
T KOG0308|consen 189 GGTEKDLRLWDPRTCKKIM---KLRGHTDNVRVL----------------------------------LVNDDGTRLLSA 231 (735)
T ss_pred cCcccceEEecccccccee---eeeccccceEEE----------------------------------EEcCCCCeEeec
Confidence 9999999999999998754 888999998883 556799999999
Q ss_pred ecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcC
Q 037288 394 SMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRT 473 (513)
Q Consensus 394 s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p 473 (513)
+.||+|++||++ ...++.++..|...|.. +..+|+=.++++|+.||.|..=|+++......+-..+.+|..+..+.
T Consensus 232 sSDgtIrlWdLg--qQrCl~T~~vH~e~VWa--L~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~ 307 (735)
T KOG0308|consen 232 SSDGTIRLWDLG--QQRCLATYIVHKEGVWA--LQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHE 307 (735)
T ss_pred CCCceEEeeecc--ccceeeeEEeccCceEE--EeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhcc
Confidence 999999999998 67799999999999766 77789999999999999999999998432222222355666666652
Q ss_pred --CCceEEeeCCCee
Q 037288 474 --QRSMGPQIEGKIH 486 (513)
Q Consensus 474 --~~~~~~t~~~~~~ 486 (513)
+...++|...++.
T Consensus 308 ~~~~~WvtTtds~I~ 322 (735)
T KOG0308|consen 308 HDNSVWVTTTDSSIK 322 (735)
T ss_pred ccCCceeeeccccce
Confidence 3446666666666
No 124
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=8.4e-19 Score=181.49 Aligned_cols=226 Identities=17% Similarity=0.183 Sum_probs=166.9
Q ss_pred eccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCC-EEEEEeCCe-EEEEECCCCcEEEEe
Q 037288 216 SLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPS-QAVIGTNLG-AAMVDMETGMASWVC 293 (513)
Q Consensus 216 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~-~l~s~s~~~-i~vwd~~~~~~~~~~ 293 (513)
+..++..+|.+.+|+...- ..-.....+.....|++.|..++|++... +||+|++++ |.|||+...+.-...
T Consensus 82 lIaGG~edG~I~ly~p~~~------~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~ 155 (1049)
T KOG0307|consen 82 LIAGGLEDGNIVLYDPASI------IANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTP 155 (1049)
T ss_pred eeeccccCCceEEecchhh------ccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCC
Confidence 3446678999999987642 11112223555778999999999999655 999997655 999999875433323
Q ss_pred ---eeCCCeEEEEEecC-CcEEEEEeCCCeEEEEECCCCccccccccccccCc--CeEEEeeCCeEEEeEeecccCcccc
Q 037288 294 ---RSKSDILAQQVIHS-GNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRI--PYSRLQRNDRVTNEQWFELKANIWP 367 (513)
Q Consensus 294 ---~~~~~V~~l~~~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~--~v~~v~~~~~~~s~~w~~~~~~~~~ 367 (513)
...+.|.+++|+.. .++|++++.+|.+.|||+|..+.+. .+..|.. .+..+.|+|
T Consensus 156 ~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii---~ls~~~~~~~~S~l~WhP---------------- 216 (1049)
T KOG0307|consen 156 GSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPII---KLSDTPGRMHCSVLAWHP---------------- 216 (1049)
T ss_pred CCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccc---ccccCCCccceeeeeeCC----------------
Confidence 24567999999964 4789999999999999999886533 4444433 334444433
Q ss_pred eeEeecCCCceEEEEEcCCCCEEEEEecC---CeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCC-CEEEEEeCCC
Q 037288 368 SHTTFMPSSISCLQSLQLYDQYFLASSMD---GTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSE-RFVMSGGEDC 443 (513)
Q Consensus 368 ~~~~~~~~~v~~~~~~~~~~~~l~s~s~d---g~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g-~~l~sg~~Dg 443 (513)
.+...+++++.| -.|.+||+|. ...+++++++|...+.. +.|.+.+ .+|++++.|+
T Consensus 217 -----------------~~aTql~~As~dd~~PviqlWDlR~-assP~k~~~~H~~Gils--lsWc~~D~~lllSsgkD~ 276 (1049)
T KOG0307|consen 217 -----------------DHATQLLVASGDDSAPVIQLWDLRF-ASSPLKILEGHQRGILS--LSWCPQDPRLLLSSGKDN 276 (1049)
T ss_pred -----------------CCceeeeeecCCCCCceeEeecccc-cCCchhhhcccccceee--eccCCCCchhhhcccCCC
Confidence 234456666654 4599999994 23389999999999866 8888866 8999999999
Q ss_pred cEEEEeCCCCeEEEEecCCCCCeEEEEEcCC-CceEEeeCCCee
Q 037288 444 KLRIWSIRSGELVFEDKFSNSVPSAVCWRTQ-RSMGPQIEGKIH 486 (513)
Q Consensus 444 ~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~-~~~~~t~~~~~~ 486 (513)
.|.+|+..+++.+..+......+..+.|+|. ..+++...-+-+
T Consensus 277 ~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgk 320 (1049)
T KOG0307|consen 277 RIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGK 320 (1049)
T ss_pred CeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccc
Confidence 9999999999999999888999999999998 335555544433
No 125
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.78 E-value=3.6e-18 Score=155.83 Aligned_cols=177 Identities=11% Similarity=0.130 Sum_probs=136.5
Q ss_pred cccccCceeEEeccccCcEEEEEEcCCCC-EEEEE-eCCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCC
Q 037288 241 FSIIRRSTMHLVASFKCTVWTADFCTNPS-QAVIG-TNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNG 318 (513)
Q Consensus 241 ~~~~~~~~~~~~~~h~~~V~~~~~s~~g~-~l~s~-s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg 318 (513)
|......++..+.--.+.|.++.|+|... .|++| +|++|.|||++++.++...-....-..|+|+|.+-.+.+|..|.
T Consensus 172 WD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~ 251 (433)
T KOG0268|consen 172 WDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDH 251 (433)
T ss_pred cccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccc
Confidence 33333334455566667899999999554 66666 78889999999999888777777788999999888899999999
Q ss_pred eEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCe
Q 037288 319 AIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGT 398 (513)
Q Consensus 319 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~ 398 (513)
.++.||++..+. + +....+|..+|.+++| +|.|+-|++||.|.+
T Consensus 252 nlY~~DmR~l~~-p-~~v~~dhvsAV~dVdf----------------------------------sptG~EfvsgsyDks 295 (433)
T KOG0268|consen 252 NLYTYDMRNLSR-P-LNVHKDHVSAVMDVDF----------------------------------SPTGQEFVSGSYDKS 295 (433)
T ss_pred cceehhhhhhcc-c-chhhcccceeEEEecc----------------------------------CCCcchhccccccce
Confidence 999999998764 2 6788888888888665 558999999999999
Q ss_pred EEEEecCCCCccceEEec-CCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 037288 399 VKLYDHRLTTRGAVQSYE-GHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVF 457 (513)
Q Consensus 399 i~lwd~~~~~~~~~~~~~-~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~ 457 (513)
|+||..+ ....--.|. --...| +++.||.|.+++++||.|+.|++|.....+.+.
T Consensus 296 IRIf~~~--~~~SRdiYhtkRMq~V--~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklg 351 (433)
T KOG0268|consen 296 IRIFPVN--HGHSRDIYHTKRMQHV--FCVKYSMDSKYIISGSDDGNVRLWKAKASEKLG 351 (433)
T ss_pred EEEeecC--CCcchhhhhHhhhhee--eEEEEeccccEEEecCCCcceeeeecchhhhcC
Confidence 9999987 322211121 011234 448999999999999999999999876655443
No 126
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.78 E-value=2.7e-18 Score=159.11 Aligned_cols=226 Identities=14% Similarity=0.074 Sum_probs=179.8
Q ss_pred eeEEeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCc--EEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEE
Q 037288 248 TMHLVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGM--ASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTV 323 (513)
Q Consensus 248 ~~~~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~--~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iw 323 (513)
....+..|.+.|..+.|-++...|++|+ |..|++|++..++ .+.++. ..+.|++++|.+++..+++++.|+.+++|
T Consensus 167 ~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~W 246 (459)
T KOG0288|consen 167 ALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLW 246 (459)
T ss_pred hhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeee
Confidence 4556889999999999999988888775 5559999988766 333333 55679999999999999999999999999
Q ss_pred ECCCCccccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEE
Q 037288 324 DVRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLAS 393 (513)
Q Consensus 324 d~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 393 (513)
++.+.+. ..+|.+|.+.|+++.|.. .+++|+ ||+...... +++...+.+..+++ .+..+++|
T Consensus 247 nvd~~r~---~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~--kt~l~~S~cnDI~~---~~~~~~Sg 318 (459)
T KOG0288|consen 247 NVDSLRL---RHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCS--KTVLPGSQCNDIVC---SISDVISG 318 (459)
T ss_pred eccchhh---hhhhcccccceeeehhhccccceeeccccchhhhhhhhhhhee--ccccccccccceEe---cceeeeec
Confidence 9999886 449999999999999977 688888 888875532 33333333333322 26678899
Q ss_pred ecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCC----CCCeEEE
Q 037288 394 SMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFS----NSVPSAV 469 (513)
Q Consensus 394 s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~----~~~v~~v 469 (513)
..|++|++||+| ...+..+...+. .|+. +..+++|..|++++.|.++.+.|+++.+....+... .+..+.+
T Consensus 319 H~DkkvRfwD~R--s~~~~~sv~~gg-~vtS--l~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrv 393 (459)
T KOG0288|consen 319 HFDKKVRFWDIR--SADKTRSVPLGG-RVTS--LDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRV 393 (459)
T ss_pred ccccceEEEecc--CCceeeEeecCc-ceee--EeeccCCeEEeeecCCCceeeeecccccEEEEeecccccccccccee
Confidence 999999999998 555777777665 6777 777889999999999999999999999988876433 3448999
Q ss_pred EEcCCCceEEeeCCCee
Q 037288 470 CWRTQRSMGPQIEGKIH 486 (513)
Q Consensus 470 ~~~p~~~~~~t~~~~~~ 486 (513)
+|+|++.++++++.|-.
T Consensus 394 vfSpd~~YvaAGS~dgs 410 (459)
T KOG0288|consen 394 VFSPDGSYVAAGSADGS 410 (459)
T ss_pred EECCCCceeeeccCCCc
Confidence 99999999888887754
No 127
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=3.2e-17 Score=147.04 Aligned_cols=196 Identities=16% Similarity=0.177 Sum_probs=155.3
Q ss_pred eeEEeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEEC
Q 037288 248 TMHLVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDV 325 (513)
Q Consensus 248 ~~~~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~ 325 (513)
++..+.+|...|.+++|-..|+.+++++ |.+..+||+++|..+..+. |....+.++-+|..+++++++.|.+.++||+
T Consensus 264 Pl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDF 343 (481)
T KOG0300|consen 264 PLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDF 343 (481)
T ss_pred eeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccc
Confidence 4667899999999999999999999886 6779999999999887765 8888999999999999999999999999999
Q ss_pred CCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecC
Q 037288 326 RKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHR 405 (513)
Q Consensus 326 ~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~ 405 (513)
+.. ++.+..|.+|...|+++.|+ -+..+++|+.|.+|++||++
T Consensus 344 Rea--I~sV~VFQGHtdtVTS~vF~-----------------------------------~dd~vVSgSDDrTvKvWdLr 386 (481)
T KOG0300|consen 344 REA--IQSVAVFQGHTDTVTSVVFN-----------------------------------TDDRVVSGSDDRTVKVWDLR 386 (481)
T ss_pred hhh--cceeeeecccccceeEEEEe-----------------------------------cCCceeecCCCceEEEeeec
Confidence 933 33377899999999986552 35678999999999999998
Q ss_pred CCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEE----ecCCCCCeEEEEEcCCC--ceEE
Q 037288 406 LTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFE----DKFSNSVPSAVCWRTQR--SMGP 479 (513)
Q Consensus 406 ~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~----~~~~~~~v~~v~~~p~~--~~~~ 479 (513)
.+ ..++.++.. ..++.. ++++..+..|+.--.+..|++||+....+.+- -.+|...|++++|..+. .-+.
T Consensus 387 NM-RsplATIRt-dS~~NR--vavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLf 462 (481)
T KOG0300|consen 387 NM-RSPLATIRT-DSPANR--VAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLF 462 (481)
T ss_pred cc-cCcceeeec-CCccce--eEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccc
Confidence 32 237777763 334444 66777788888888899999999976553332 35677889999999773 2344
Q ss_pred eeCCC
Q 037288 480 QIEGK 484 (513)
Q Consensus 480 t~~~~ 484 (513)
+++-|
T Consensus 463 tcGFD 467 (481)
T KOG0300|consen 463 TCGFD 467 (481)
T ss_pred ccccc
Confidence 44433
No 128
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.77 E-value=3.4e-17 Score=160.97 Aligned_cols=249 Identities=14% Similarity=0.161 Sum_probs=186.9
Q ss_pred eEEeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEE---EeeeCCCeEE-EEEec-CCcEEEEEeCCCeEEE
Q 037288 249 MHLVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASW---VCRSKSDILA-QQVIH-SGNVVLCGFRNGAIVT 322 (513)
Q Consensus 249 ~~~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~---~~~~~~~V~~-l~~~~-~~~~l~sg~~dg~i~i 322 (513)
...+.+|...|..++..+.. .+++++ |+++++|+-..++.+. ...+.+-|.+ +++.+ ++-.+++|+.|.+|.+
T Consensus 7 s~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v 85 (745)
T KOG0301|consen 7 SHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIV 85 (745)
T ss_pred EEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEE
Confidence 35689999999999986655 455555 6779999987665433 2335555555 77775 4456999999999999
Q ss_pred EECCCCccccccccccccCcCeEEEeeCC--eEEEeEeecccCcccc----eeEeecCCCceEEEEEcCCCCEEEEEecC
Q 037288 323 VDVRKRQRGCSSRAGRRHRIPYSRLQRND--RVTNEQWFELKANIWP----SHTTFMPSSISCLQSLQLYDQYFLASSMD 396 (513)
Q Consensus 323 wd~~~~~~~~~~~~~~~h~~~v~~v~~~~--~~~s~~w~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~l~s~s~d 396 (513)
|.+.+..+ +..+.+|...|.+++... .+++|+||........ .....|...|-.+..++.+ .++||+.|
T Consensus 86 ~~~~~~~P---~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~l~~~l~gH~asVWAv~~l~e~--~~vTgsaD 160 (745)
T KOG0301|consen 86 FKLSQAEP---LYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGELVYSLQGHTASVWAVASLPEN--TYVTGSAD 160 (745)
T ss_pred EecCCCCc---hhhhhccccceeeeecCCcCceEecccccceEEecchhhhcccCCcchheeeeeecCCC--cEEeccCc
Confidence 99988876 559999999999999665 7799999865432221 1234567778887777643 89999999
Q ss_pred CeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCc
Q 037288 397 GTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRS 476 (513)
Q Consensus 397 g~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~ 476 (513)
.+|++|.- ...+++|.+|.+.|.. +++-+++ .+++++.||.|++|++ +|+.+.+..+|.+-|.++....+..
T Consensus 161 KtIklWk~----~~~l~tf~gHtD~VRg--L~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~ 232 (745)
T KOG0301|consen 161 KTIKLWKG----GTLLKTFSGHTDCVRG--LAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDG 232 (745)
T ss_pred ceeeeccC----Cchhhhhccchhheee--eEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCC
Confidence 99999984 4589999999999988 6665554 5789999999999998 8899999999999999999777767
Q ss_pred eEEeeCCCeeeeec----------cCCcccce--------eeeeeccceeeee
Q 037288 477 MGPQIEGKIHEEFD----------LGQRHSWE--------AWIGTQEGLFRMN 511 (513)
Q Consensus 477 ~~~t~~~~~~~~~~----------~~~~~~~~--------~~~gs~~g~~~~~ 511 (513)
.++|++.|-.-+++ .-...-|+ -.+|.-||..|+.
T Consensus 233 ~Ivs~gEDrtlriW~~~e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVf 285 (745)
T KOG0301|consen 233 LIVSTGEDRTLRIWKKDECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVF 285 (745)
T ss_pred eEEEecCCceEEEeecCceEEEEecCccceEEEEEeeCCCEEEeccCceEEEE
Confidence 77777766552111 11222343 3468899988863
No 129
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.76 E-value=3.3e-17 Score=159.62 Aligned_cols=210 Identities=16% Similarity=0.189 Sum_probs=144.7
Q ss_pred EeccccCcEEEEEEcCCC-CEEEEEe-CCeEEEEECCCCcE-------EEE---------------------eeeCCCeE
Q 037288 251 LVASFKCTVWTADFCTNP-SQAVIGT-NLGAAMVDMETGMA-------SWV---------------------CRSKSDIL 300 (513)
Q Consensus 251 ~~~~h~~~V~~~~~s~~g-~~l~s~s-~~~i~vwd~~~~~~-------~~~---------------------~~~~~~V~ 300 (513)
.+.||...|.+++|.+.. ..+++|+ |+.|.|||++.... ... ..+...|.
T Consensus 139 ~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ 218 (720)
T KOG0321|consen 139 LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIF 218 (720)
T ss_pred eecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCcee
Confidence 488999999999999954 5777886 45599999864310 000 00223344
Q ss_pred E---EEEecCCcEEEEEeC-CCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCC
Q 037288 301 A---QQVIHSGNVVLCGFR-NGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSS 376 (513)
Q Consensus 301 ~---l~~~~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~ 376 (513)
+ +-+..|...||+++. |+.|+|||++.............+.-+ .+ -+..-.
T Consensus 219 ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~------------------------t~-skrs~G 273 (720)
T KOG0321|consen 219 SSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYP------------------------TH-SKRSVG 273 (720)
T ss_pred eeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCcc------------------------Cc-ccceee
Confidence 4 445578888888888 999999999987643211111111000 00 000112
Q ss_pred ceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-E
Q 037288 377 ISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGE-L 455 (513)
Q Consensus 377 v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~-~ 455 (513)
++++ .....|.+|.+.+.|+.|.+||++.....++..+.++...-....-..+|++.+|++|+.|...++|.+.+.+ .
T Consensus 274 ~~nL-~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~ 352 (720)
T KOG0321|consen 274 QVNL-ILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAP 352 (720)
T ss_pred eEEE-EecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCC
Confidence 3333 4556678888888899999999986555688888888776555556779999999999999999999998865 4
Q ss_pred EEEecCCCCCeEEEEEcCC-CceEEeeCCCee
Q 037288 456 VFEDKFSNSVPSAVCWRTQ-RSMGPQIEGKIH 486 (513)
Q Consensus 456 ~~~~~~~~~~v~~v~~~p~-~~~~~t~~~~~~ 486 (513)
...+.+|.-.|++++|.|. -.-++|+..|..
T Consensus 353 ~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~ 384 (720)
T KOG0321|consen 353 PALLLGHTREVTTVRWLPSATTPVATCSDDFR 384 (720)
T ss_pred hhhhhCcceEEEEEeeccccCCCceeeccCcc
Confidence 4457788889999999998 344555566655
No 130
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.76 E-value=1.8e-17 Score=162.95 Aligned_cols=194 Identities=12% Similarity=0.104 Sum_probs=150.6
Q ss_pred eccccCcEEEEEEcCCCCEEEEEeCC-eEEEEECCCCcEEEEee-eCCCeEEEEEec---CCcEEEEEeCCCeEEEEECC
Q 037288 252 VASFKCTVWTADFCTNPSQAVIGTNL-GAAMVDMETGMASWVCR-SKSDILAQQVIH---SGNVVLCGFRNGAIVTVDVR 326 (513)
Q Consensus 252 ~~~h~~~V~~~~~s~~g~~l~s~s~~-~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~---~~~~l~sg~~dg~i~iwd~~ 326 (513)
+..-...+.+++.+|+|++||+|..+ .++|+++..-+...++. |.+.|.|+.|+. ..++||++++|..|.|||+.
T Consensus 455 ~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~ 534 (1080)
T KOG1408|consen 455 TCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVK 534 (1080)
T ss_pred hcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecc
Confidence 34445689999999999999999655 49999998877665555 899999999984 23799999999999999996
Q ss_pred CCccccccccccccCcCeEEEeeCC-----eEEEeE--------------------------------------------
Q 037288 327 KRQRGCSSRAGRRHRIPYSRLQRND-----RVTNEQ-------------------------------------------- 357 (513)
Q Consensus 327 ~~~~~~~~~~~~~h~~~v~~v~~~~-----~~~s~~-------------------------------------------- 357 (513)
..-. . ++++.+|...|++|.|.- ++++++
T Consensus 535 rny~-l-~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~ 612 (1080)
T KOG1408|consen 535 RNYD-L-VQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVV 612 (1080)
T ss_pred cccc-h-hhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEE
Confidence 5432 2 679999999999998854 444443
Q ss_pred ----------eecccCcccceeEeec--CCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEE
Q 037288 358 ----------WFELKANIWPSHTTFM--PSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRI 425 (513)
Q Consensus 358 ----------w~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~ 425 (513)
|+...++......-.+ .+.... +.+.|.|.|+++...|.++.++|.- ...++..+.||...|+.
T Consensus 613 t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIK-v~lDPSgiY~atScsdktl~~~Df~--sgEcvA~m~GHsE~VTG- 688 (1080)
T KOG1408|consen 613 TVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIK-VILDPSGIYLATSCSDKTLCFVDFV--SGECVAQMTGHSEAVTG- 688 (1080)
T ss_pred EEecccceEEEeccccceeeeecccccCCCceEE-EEECCCccEEEEeecCCceEEEEec--cchhhhhhcCcchheee-
Confidence 2222222211111111 123333 3678999999999999999999997 66699999999999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 037288 426 QLGVDQSERFVMSGGEDCKLRIWSIRS 452 (513)
Q Consensus 426 ~~~~s~~g~~l~sg~~Dg~v~vwd~~~ 452 (513)
+.|.+|.++|++.+.||.|.||.+..
T Consensus 689 -~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 689 -VKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred -eeecccchhheeecCCceEEEEECch
Confidence 88999999999999999999998853
No 131
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=1.1e-16 Score=143.86 Aligned_cols=232 Identities=13% Similarity=0.140 Sum_probs=154.2
Q ss_pred EEeccccCcEEEEEEcCCCCEEEEEeC-CeEEEEECCCCc-----EEEEeeeCCCeEEEEEecCCc-EEEEEeCCCeEEE
Q 037288 250 HLVASFKCTVWTADFCTNPSQAVIGTN-LGAAMVDMETGM-----ASWVCRSKSDILAQQVIHSGN-VVLCGFRNGAIVT 322 (513)
Q Consensus 250 ~~~~~h~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~~-----~~~~~~~~~~V~~l~~~~~~~-~l~sg~~dg~i~i 322 (513)
..+++|.+.|++++|+.||++||++++ +.|++|+++.-. +++..-.-+.-+.+.|+||-. ++++.-...++++
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v 159 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV 159 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence 448999999999999999999998855 559999987642 111111122468899999984 5566666778999
Q ss_pred EECCCCcccc---cccc------ccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeEeecCCCceEEEEE
Q 037288 323 VDVRKRQRGC---SSRA------GRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSL 383 (513)
Q Consensus 323 wd~~~~~~~~---~~~~------~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~ 383 (513)
|.+...+... .... -.-|...+..+.... .+.+++ |++. |+... .+.....-....+.
T Consensus 160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~--~idtnq~~n~~aav 236 (420)
T KOG2096|consen 160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQ--SIDTNQSSNYDAAV 236 (420)
T ss_pred EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceee--eeccccccccceee
Confidence 9775433211 0000 112344444444433 455555 8877 54332 22222222334678
Q ss_pred cCCCCEEEEEecCCeEEEEecCCCCcc------ceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-----
Q 037288 384 QLYDQYFLASSMDGTVKLYDHRLTTRG------AVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRS----- 452 (513)
Q Consensus 384 ~~~~~~l~s~s~dg~i~lwd~~~~~~~------~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~----- 452 (513)
+|+|+++++++..-.|++|.+-....+ .+..++||...|.. ++|+++...+++.+.||+++|||+.-
T Consensus 237 SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~--~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~ 314 (420)
T KOG2096|consen 237 SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLA--AAFSNSSTRAVTVSKDGKWRIWDTDVRYEAG 314 (420)
T ss_pred CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheee--eeeCCCcceeEEEecCCcEEEeeccceEecC
Confidence 999999999999999999987543333 45678999999877 99999999999999999999999742
Q ss_pred --CeEEEEe----cCCCCCeEEEEEcCCCceEE-eeCCCee
Q 037288 453 --GELVFED----KFSNSVPSAVCWRTQRSMGP-QIEGKIH 486 (513)
Q Consensus 453 --~~~~~~~----~~~~~~v~~v~~~p~~~~~~-t~~~~~~ 486 (513)
.+.+.+. ...++....++.+|++..|| +.+.+++
T Consensus 315 qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~ 355 (420)
T KOG2096|consen 315 QDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLK 355 (420)
T ss_pred CCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceE
Confidence 2333332 12233345789999965554 4444544
No 132
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.75 E-value=1.4e-16 Score=143.79 Aligned_cols=233 Identities=9% Similarity=0.131 Sum_probs=159.5
Q ss_pred CCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCC-CEEEEEeCCe-EEEEECCCCcEEEEee----e
Q 037288 222 TGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNP-SQAVIGTNLG-AAMVDMETGMASWVCR----S 295 (513)
Q Consensus 222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g-~~l~s~s~~~-i~vwd~~~~~~~~~~~----~ 295 (513)
..|.+.+.++-+... ...+.+|...|+.+.++|+. +++++++.+. |++||+++..++..+. |
T Consensus 113 ~~GvIrVid~~~~~~------------~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egH 180 (385)
T KOG1034|consen 113 YLGVIRVIDVVSGQC------------SKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGH 180 (385)
T ss_pred ceeEEEEEecchhhh------------ccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccc
Confidence 567777666654333 34589999999999999965 5777887665 9999999999999886 8
Q ss_pred CCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccce--eEeec
Q 037288 296 KSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPS--HTTFM 373 (513)
Q Consensus 296 ~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~--~~~~~ 373 (513)
...|.+++|+++|..|++++.|.++++|++...+....+... +.|++.-...-+. ......|. .+--|
T Consensus 181 rdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s---------~~~~~~~t~~pfp-t~~~~fp~fst~diH 250 (385)
T KOG1034|consen 181 RDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELS---------ITYSPNKTTRPFP-TPKTHFPDFSTTDIH 250 (385)
T ss_pred cCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhh---------cccCCCCccCcCC-ccccccccccccccc
Confidence 889999999999999999999999999999855421101100 1111100000000 00000011 12234
Q ss_pred CCCceEEEEEcCCCCEEEEEecCCeEEEEecCCC---------Ccc---ceEEecCCCCceeEEEEEEcCCCCEEEEEeC
Q 037288 374 PSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLT---------TRG---AVQSYEGHVNSHTRIQLGVDQSERFVMSGGE 441 (513)
Q Consensus 374 ~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~---------~~~---~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~ 441 (513)
...|.|+.+| |+++++-+-++.|..|..... ... .+..+.-....+..+.++|+|-+++|+.|.+
T Consensus 251 rnyVDCvrw~---gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq 327 (385)
T KOG1034|consen 251 RNYVDCVRWF---GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQ 327 (385)
T ss_pred cchHHHHHHH---hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccC
Confidence 5566666665 688999898999999987211 111 3455555666777888999999999999999
Q ss_pred CCcEEEEeCCCCeEEE--EecC--CCCCeEEEEEcCCCceEE
Q 037288 442 DCKLRIWSIRSGELVF--EDKF--SNSVPSAVCWRTQRSMGP 479 (513)
Q Consensus 442 Dg~v~vwd~~~~~~~~--~~~~--~~~~v~~v~~~p~~~~~~ 479 (513)
.|.|++||++..++.. ++.+ ....|...+|+.++.+++
T Consensus 328 ~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv 369 (385)
T KOG1034|consen 328 SGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILV 369 (385)
T ss_pred CCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEE
Confidence 9999999999876532 2222 256799999999965433
No 133
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.75 E-value=1.1e-16 Score=150.43 Aligned_cols=232 Identities=12% Similarity=0.068 Sum_probs=163.4
Q ss_pred eEEeccccCcEEEEEEcCCCC--EEEEEeC-CeEEEEECCCCc-----EEEEeeeCCCeEEEEEecCC-cEEEEEeCCCe
Q 037288 249 MHLVASFKCTVWTADFCTNPS--QAVIGTN-LGAAMVDMETGM-----ASWVCRSKSDILAQQVIHSG-NVVLCGFRNGA 319 (513)
Q Consensus 249 ~~~~~~h~~~V~~~~~s~~g~--~l~s~s~-~~i~vwd~~~~~-----~~~~~~~~~~V~~l~~~~~~-~~l~sg~~dg~ 319 (513)
.....-|.+.|.+++|+|... ++|+|.. |+|-+||+.+.+ ......|..+|.++.|+|.. ..+++.+.||+
T Consensus 179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt 258 (498)
T KOG4328|consen 179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT 258 (498)
T ss_pred cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCce
Confidence 344677889999999999544 5666654 449999996332 33344588889999999966 78999999999
Q ss_pred EEEEECCCCccccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeEeecCCCceEEEEEcCCCCE
Q 037288 320 IVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQLYDQY 389 (513)
Q Consensus 320 i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 389 (513)
|++-|+....... +-.+......+..++|+. .++.+. ||.+.+.-......-|...|.++...+-...+
T Consensus 259 iR~~D~~~~i~e~-v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~ 337 (498)
T KOG4328|consen 259 IRLQDFEGNISEE-VLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWF 337 (498)
T ss_pred eeeeeecchhhHH-HhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchh
Confidence 9999998775433 334444566777888876 455544 66666553322233344477777555556788
Q ss_pred EEEEecCCeEEEEecCCCCcc--ceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCC----CCeEEEEecCCC
Q 037288 390 FLASSMDGTVKLYDHRLTTRG--AVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIR----SGELVFEDKFSN 463 (513)
Q Consensus 390 l~s~s~dg~i~lwd~~~~~~~--~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~----~~~~~~~~~~~~ 463 (513)
||+++.|++++|||+|....+ ++.....|...|.. ..|||++..|++.+.|+.|+|||.. .-+++.++.+..
T Consensus 338 laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~s--AyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~ 415 (498)
T KOG4328|consen 338 LATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNS--AYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNN 415 (498)
T ss_pred eeecccCcceeeeehhhhcCCCCcceecccccceeee--eEEcCCCCceEeeccCCceEEeecccccccCCccceeeccC
Confidence 999999999999999954433 23444568888877 8999998889999999999999983 344444544322
Q ss_pred ---C--CeEEEEEcCCCceEEeeCC
Q 037288 464 ---S--VPSAVCWRTQRSMGPQIEG 483 (513)
Q Consensus 464 ---~--~v~~v~~~p~~~~~~t~~~ 483 (513)
. .....+|.|+..+++....
T Consensus 416 ~t~RwlT~fKA~W~P~~~li~vg~~ 440 (498)
T KOG4328|consen 416 RTGRWLTPFKAAWDPDYNLIVVGRY 440 (498)
T ss_pred cccccccchhheeCCCccEEEEecc
Confidence 1 1345689998666665443
No 134
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=4.8e-16 Score=152.68 Aligned_cols=266 Identities=17% Similarity=0.142 Sum_probs=185.0
Q ss_pred eeeEEeccccCeEEEEEeecccccccceeEEeeeccccccccccccccCCCCCccccCcceeeecccceEEEecCCCCcc
Q 037288 123 TDVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNKTESSKAPEHIWRLNKASILMPSSVSCIKLFGKHPSC 202 (513)
Q Consensus 123 ~~~l~tg~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~s~i~si~~~~~~~~~ 202 (513)
.+.|+.+-.+|.|.||++.... .....++ . .+.+.+...+|.+.+..+
T Consensus 37 S~~lAvsRt~g~IEiwN~~~~w---~~~~vi~---------g--~~drsIE~L~W~e~~RLF------------------ 84 (691)
T KOG2048|consen 37 SNQLAVSRTDGNIEIWNLSNNW---FLEPVIH---------G--PEDRSIESLAWAEGGRLF------------------ 84 (691)
T ss_pred CCceeeeccCCcEEEEccCCCc---eeeEEEe---------c--CCCCceeeEEEccCCeEE------------------
Confidence 3459999999999999985543 2112211 1 223347778886441111
Q ss_pred ccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeCCe-EEE
Q 037288 203 ATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNLG-AAM 281 (513)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~~-i~v 281 (513)
+...+|.+.-|++.+.... ..+....++||+++.+|.+..++.|+|++ +..
T Consensus 85 ----------------S~g~sg~i~EwDl~~lk~~------------~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~ 136 (691)
T KOG2048|consen 85 ----------------SSGLSGSITEWDLHTLKQK------------YNIDSNGGAIWSIAINPENTILAIGCDDGVLYD 136 (691)
T ss_pred ----------------eecCCceEEEEecccCcee------------EEecCCCcceeEEEeCCccceEEeecCCceEEE
Confidence 1124677777887755444 33666778999999999999999998777 455
Q ss_pred EECCCCcEEEE---eeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCcccccccc--ccccCcCeEEEeeCCeEEEe
Q 037288 282 VDMETGMASWV---CRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRA--GRRHRIPYSRLQRNDRVTNE 356 (513)
Q Consensus 282 wd~~~~~~~~~---~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~--~~~h~~~v~~v~~~~~~~s~ 356 (513)
++...+..... .+.++.|.+++|+|++..|++|+.||.|++||...+.... +.+ +.+-...=..+
T Consensus 137 ~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~-~~~~~~d~l~k~~~~i--------- 206 (691)
T KOG2048|consen 137 FSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLH-IITMQLDRLSKREPTI--------- 206 (691)
T ss_pred EecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEE-EeeecccccccCCceE---------
Confidence 56666554322 2256889999999999999999999999999999887543 111 00000000011
Q ss_pred EeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEE
Q 037288 357 QWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFV 436 (513)
Q Consensus 357 ~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l 436 (513)
+-++..+ ....+++|...|+|++||.. ....++.+..|...|.+ ++.++++..+
T Consensus 207 --------------------VWSv~~L--rd~tI~sgDS~G~V~FWd~~--~gTLiqS~~~h~adVl~--Lav~~~~d~v 260 (691)
T KOG2048|consen 207 --------------------VWSVLFL--RDSTIASGDSAGTVTFWDSI--FGTLIQSHSCHDADVLA--LAVADNEDRV 260 (691)
T ss_pred --------------------EEEEEEe--ecCcEEEecCCceEEEEccc--CcchhhhhhhhhcceeE--EEEcCCCCeE
Confidence 1222334 35578999999999999986 34488888999988866 8888999999
Q ss_pred EEEeCCCcEEEEeCCCCeE----EEEecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288 437 MSGGEDCKLRIWSIRSGEL----VFEDKFSNSVPSAVCWRTQRSMGPQIEGKIH 486 (513)
Q Consensus 437 ~sg~~Dg~v~vwd~~~~~~----~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~ 486 (513)
+++|.|+.|..+...+.+. ......|...|.+++..++ .+.+++.|..
T Consensus 261 fsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~ 312 (691)
T KOG2048|consen 261 FSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFT 312 (691)
T ss_pred EEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeE
Confidence 9999999999998877643 2224567778999998888 6666676666
No 135
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.74 E-value=3.5e-15 Score=141.81 Aligned_cols=238 Identities=13% Similarity=0.081 Sum_probs=175.6
Q ss_pred CCCCCCcccccCceeEEeccccCcEEEEEEcC-CCCEEEEEeCCeEEEEECCCCcEEEEe---e--eCCCeEEEEEecCC
Q 037288 235 LDIGPNFSIIRRSTMHLVASFKCTVWTADFCT-NPSQAVIGTNLGAAMVDMETGMASWVC---R--SKSDILAQQVIHSG 308 (513)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~-~g~~l~s~s~~~i~vwd~~~~~~~~~~---~--~~~~V~~l~~~~~~ 308 (513)
+....+|.|+...........++.|..++|+| +.+++++++.+.+..|+.+.+...... + .+.-|.|++|.++|
T Consensus 179 ~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~eng 258 (626)
T KOG2106|consen 179 PHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENG 258 (626)
T ss_pred ccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCC
Confidence 34467788887766666777888999999999 555777888888999999988654433 2 23459999999998
Q ss_pred cEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCC--eEEEeE-------eecccCccc---------ceeE
Q 037288 309 NVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND--RVTNEQ-------WFELKANIW---------PSHT 370 (513)
Q Consensus 309 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~--~~~s~~-------w~~~~~~~~---------~~~~ 370 (513)
. +++|..+|.|.||+.+..+... ...+|.+.|.++..-. .+++|. |+-.-.... +.++
T Consensus 259 d-viTgDS~G~i~Iw~~~~~~~~k---~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRt 334 (626)
T KOG2106|consen 259 D-VITGDSGGNILIWSKGTNRISK---QVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRT 334 (626)
T ss_pred C-EEeecCCceEEEEeCCCceEEe---EeeecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeE
Confidence 7 5699999999999998776533 4449999999998876 777766 773222111 1111
Q ss_pred eec------------------------------CCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCC
Q 037288 371 TFM------------------------------PSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVN 420 (513)
Q Consensus 371 ~~~------------------------------~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~ 420 (513)
+.. .+..-. .+.+|+.++|++++.|+.+++|+- .+++-+.. -..
T Consensus 335 v~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwg-la~hps~~q~~T~gqdk~v~lW~~----~k~~wt~~-~~d 408 (626)
T KOG2106|consen 335 VAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWG-LATHPSKNQLLTCGQDKHVRLWND----HKLEWTKI-IED 408 (626)
T ss_pred EecCCCcEEEeeccceEEEeeecCCceEEEEecccceee-EEcCCChhheeeccCcceEEEccC----CceeEEEE-ecC
Confidence 110 001111 245778889999999999999992 33333322 123
Q ss_pred ceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288 421 SHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIH 486 (513)
Q Consensus 421 ~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~ 486 (513)
+..+ ++|+|.| .|+.|...|...+.|.++..++..-.. ++++++++|+|++.++|-.+.|-+
T Consensus 409 ~~~~--~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~ 470 (626)
T KOG2106|consen 409 PAEC--ADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNH 470 (626)
T ss_pred ceeE--eeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCe
Confidence 3334 8999999 999999999999999999777776555 889999999999999999888877
No 136
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=1e-16 Score=155.03 Aligned_cols=196 Identities=13% Similarity=0.144 Sum_probs=153.0
Q ss_pred eEEeccccCcEEEEEEcCCCCEEEEEe----CCeEEEEECCCCcEEEEe-eeCCCeEEEEEecCCcEEEEEeCCCeEEEE
Q 037288 249 MHLVASFKCTVWTADFCTNPSQAVIGT----NLGAAMVDMETGMASWVC-RSKSDILAQQVIHSGNVVLCGFRNGAIVTV 323 (513)
Q Consensus 249 ~~~~~~h~~~V~~~~~s~~g~~l~s~s----~~~i~vwd~~~~~~~~~~-~~~~~V~~l~~~~~~~~l~sg~~dg~i~iw 323 (513)
+.....|...|..+.||..|.||++.. +..|.|.++.......-+ ..++.|.++.|+|....|++++. ..|+||
T Consensus 514 v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiY 592 (733)
T KOG0650|consen 514 VCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIY 592 (733)
T ss_pred eEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEE
Confidence 455678999999999999999999653 234899999877654444 46777999999999988888865 579999
Q ss_pred ECCCCccccccccccccCcCeEEEeeCC---eEEEeE------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEe
Q 037288 324 DVRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASS 394 (513)
Q Consensus 324 d~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s 394 (513)
|+..+.. ++.+......|..++.+| .++.++ |.-..-..++.+++.++..+..-+++++.-.+|++|+
T Consensus 593 dL~kqel---vKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~s 669 (733)
T KOG0650|consen 593 DLSKQEL---VKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGS 669 (733)
T ss_pred ehhHHHH---HHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeec
Confidence 9987654 557778888999999999 777777 6555555556666766555444468888999999999
Q ss_pred cCCeEEEEecCCC----Ccc---ceEEecCCCCc--eeEEEEEEcCCCCEEEEEeCCCcEEEE
Q 037288 395 MDGTVKLYDHRLT----TRG---AVQSYEGHVNS--HTRIQLGVDQSERFVMSGGEDCKLRIW 448 (513)
Q Consensus 395 ~dg~i~lwd~~~~----~~~---~~~~~~~h~~~--v~~~~~~~s~~g~~l~sg~~Dg~v~vw 448 (513)
.||++.|+--+.. ++. +++.+.+|... ...+.+.|+|...||+++|.||+|++|
T Consensus 670 dDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 670 DDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred CCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 9999999853321 222 67888899644 345678899999999999999999998
No 137
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.74 E-value=6.7e-15 Score=142.24 Aligned_cols=204 Identities=11% Similarity=0.008 Sum_probs=139.6
Q ss_pred EEEEEEcCCCCEEEEE-e-CCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCC-eEEEEECCCCccccccc
Q 037288 259 VWTADFCTNPSQAVIG-T-NLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNG-AIVTVDVRKRQRGCSSR 335 (513)
Q Consensus 259 V~~~~~s~~g~~l~s~-s-~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg-~i~iwd~~~~~~~~~~~ 335 (513)
+..++|+|+++.++++ . ++.+++||+.+++.+..+.+...+.+++|+|+|.+++++..++ .+.+||.++.....
T Consensus 75 ~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~--- 151 (300)
T TIGR03866 75 PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVD--- 151 (300)
T ss_pred ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEE---
Confidence 4678999999977644 3 5669999999988777776556688999999999999888775 56778987765422
Q ss_pred cccccCcCeEEEeeCC---eEE-EeE-------eecccCcccceeEeecC----CC--ceEEEEEcCCCCEEEE-EecCC
Q 037288 336 AGRRHRIPYSRLQRND---RVT-NEQ-------WFELKANIWPSHTTFMP----SS--ISCLQSLQLYDQYFLA-SSMDG 397 (513)
Q Consensus 336 ~~~~h~~~v~~v~~~~---~~~-s~~-------w~~~~~~~~~~~~~~~~----~~--v~~~~~~~~~~~~l~s-~s~dg 397 (513)
.+. .......+.|++ .++ ++. |+...++.......... .. ... ..++++++++++ .+.++
T Consensus 152 ~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~s~dg~~~~~~~~~~~ 229 (300)
T TIGR03866 152 NVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVG-IKLTKDGKTAFVALGPAN 229 (300)
T ss_pred EEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccc-eEECCCCCEEEEEcCCCC
Confidence 221 223446788887 343 321 87776653322221110 11 122 357899998654 44567
Q ss_pred eEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcC
Q 037288 398 TVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSG-GEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRT 473 (513)
Q Consensus 398 ~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg-~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p 473 (513)
.|.+||++ ....+..+. +...+.. ++|+|+|++|+++ +.+|.|.+||+.+++++..+... ...+.++++|
T Consensus 230 ~i~v~d~~--~~~~~~~~~-~~~~~~~--~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 230 RVAVVDAK--TYEVLDYLL-VGQRVWQ--LAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred eEEEEECC--CCcEEEEEE-eCCCcce--EEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 89999996 333444333 3334444 8899999999886 46899999999999999998764 4568888875
No 138
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.73 E-value=8.3e-15 Score=139.32 Aligned_cols=270 Identities=13% Similarity=0.109 Sum_probs=184.6
Q ss_pred EEecCCCCccccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccc-cCcEEEEEEcCCCCEE
Q 037288 193 IKLFGKHPSCATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASF-KCTVWTADFCTNPSQA 271 (513)
Q Consensus 193 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~~~~s~~g~~l 271 (513)
++.+.+-...+.+||....++++.. .|++..|.+...... +.. ..+..+ +..|.|++|.++|+.+
T Consensus 196 vk~sne~v~~a~FHPtd~nliit~G-----k~H~~Fw~~~~~~l~-------k~~--~~fek~ekk~Vl~v~F~engdvi 261 (626)
T KOG2106|consen 196 VKTSNEVVFLATFHPTDPNLIITCG-----KGHLYFWTLRGGSLV-------KRQ--GIFEKREKKFVLCVTFLENGDVI 261 (626)
T ss_pred ceeccceEEEEEeccCCCcEEEEeC-----CceEEEEEccCCceE-------EEe--eccccccceEEEEEEEcCCCCEE
Confidence 3444555567778888666655554 678888865432221 111 223332 2689999999999988
Q ss_pred EEEeCCeEEEEECCCCcEEEE-eeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEE----
Q 037288 272 VIGTNLGAAMVDMETGMASWV-CRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSR---- 346 (513)
Q Consensus 272 ~s~s~~~i~vwd~~~~~~~~~-~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~---- 346 (513)
..-+++.|.||+..+.+.... ..|++.|.++....+|.+|- |+.|..|..||-.-.+ .. -..++...++|+.
T Consensus 262 TgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k-~r-~~elPe~~G~iRtv~e~ 338 (626)
T KOG2106|consen 262 TGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRK-LR-ETELPEQFGPIRTVAEG 338 (626)
T ss_pred eecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccc-cc-cccCchhcCCeeEEecC
Confidence 766888899999987764443 35889999999999998665 9999999999932221 11 1123333344433
Q ss_pred -----------------------------------EeeCC---eEEEeE-------eecccCcccceeEeecCCCceEEE
Q 037288 347 -----------------------------------LQRND---RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQ 381 (513)
Q Consensus 347 -----------------------------------v~~~~---~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~ 381 (513)
++-+| .+++++ |+ . -++.-+.....++.|.
T Consensus 339 ~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~--~k~~wt~~~~d~~~~~- 413 (626)
T KOG2106|consen 339 KGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--D--HKLEWTKIIEDPAECA- 413 (626)
T ss_pred CCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--C--CceeEEEEecCceeEe-
Confidence 33333 334333 44 1 1122233334455554
Q ss_pred EEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-EEEE-e
Q 037288 382 SLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGE-LVFE-D 459 (513)
Q Consensus 382 ~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~-~~~~-~ 459 (513)
.|+|.| .+|.|+..|...+.|.. ...+.++.....++.+ +.|+|+|.+||.|+.|+.|+||-+.... .... -
T Consensus 414 ~fhpsg-~va~Gt~~G~w~V~d~e---~~~lv~~~~d~~~ls~--v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~ 487 (626)
T KOG2106|consen 414 DFHPSG-VVAVGTATGRWFVLDTE---TQDLVTIHTDNEQLSV--VRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVG 487 (626)
T ss_pred eccCcc-eEEEeeccceEEEEecc---cceeEEEEecCCceEE--EEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEee
Confidence 788999 99999999999999985 3433333333666666 8999999999999999999999987643 3322 3
Q ss_pred cCCCCCeEEEEEcCCCceEEeeCCCeeeeec
Q 037288 460 KFSNSVPSAVCWRTQRSMGPQIEGKIHEEFD 490 (513)
Q Consensus 460 ~~~~~~v~~v~~~p~~~~~~t~~~~~~~~~~ 490 (513)
+.+.++|+.+.|++++.++.+.+.|++-.|+
T Consensus 488 k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 488 KCSGSPITHLDWSSDSQFLVSNSGDYEILYW 518 (626)
T ss_pred eecCceeEEeeecCCCceEEeccCceEEEEE
Confidence 4566999999999999999999999996554
No 139
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.73 E-value=1.9e-16 Score=140.81 Aligned_cols=197 Identities=12% Similarity=0.117 Sum_probs=144.4
Q ss_pred EeccccCcEEEEEEcC-CCCEEEEE-eCCeEEEEECCCCc----------EEEEe------eeCCCeEEEEEec-CCcEE
Q 037288 251 LVASFKCTVWTADFCT-NPSQAVIG-TNLGAAMVDMETGM----------ASWVC------RSKSDILAQQVIH-SGNVV 311 (513)
Q Consensus 251 ~~~~h~~~V~~~~~s~-~g~~l~s~-s~~~i~vwd~~~~~----------~~~~~------~~~~~V~~l~~~~-~~~~l 311 (513)
....|.+.|+++...+ .|+++++| +|+.|.+||++.-. ..... .|+-.|.++.|-| |.-++
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 3667899999999988 78999988 56669999997542 01111 1556799999998 55799
Q ss_pred EEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEE
Q 037288 312 LCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFL 391 (513)
Q Consensus 312 ~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 391 (513)
.+++.|.++++||..+.+... .+. -.+.|.+-+++| ....-.++|
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~---~F~-me~~VYshamSp-------------------------------~a~sHcLiA 162 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAV---DFK-MEGKVYSHAMSP-------------------------------MAMSHCLIA 162 (397)
T ss_pred ecccccceEEEeecccceeeE---Eee-cCceeehhhcCh-------------------------------hhhcceEEE
Confidence 999999999999999876533 110 011122222211 111245678
Q ss_pred EEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCE-EEEEeCCCcEEEEeCCCC-eEEEEe----------
Q 037288 392 ASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERF-VMSGGEDCKLRIWSIRSG-ELVFED---------- 459 (513)
Q Consensus 392 s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~-l~sg~~Dg~v~vwd~~~~-~~~~~~---------- 459 (513)
+|..|-.|++.|+. +....+++.||.+.|.. +.|+|...| |++|+.||.|++||++.. -+...+
T Consensus 163 ~gtr~~~VrLCDi~--SGs~sH~LsGHr~~vla--V~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~ 238 (397)
T KOG4283|consen 163 AGTRDVQVRLCDIA--SGSFSHTLSGHRDGVLA--VEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPI 238 (397)
T ss_pred EecCCCcEEEEecc--CCcceeeeccccCceEE--EEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcc
Confidence 88999999999996 55589999999999855 999998766 578999999999999754 222222
Q ss_pred ----cCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288 460 ----KFSNSVPSAVCWRTQRSMGPQIEGKIH 486 (513)
Q Consensus 460 ----~~~~~~v~~v~~~p~~~~~~t~~~~~~ 486 (513)
..|.+.|+++||..++..+++.+.|-.
T Consensus 239 ~~~n~ah~gkvngla~tSd~~~l~~~gtd~r 269 (397)
T KOG4283|consen 239 LKTNTAHYGKVNGLAWTSDARYLASCGTDDR 269 (397)
T ss_pred ccccccccceeeeeeecccchhhhhccCccc
Confidence 345678999999999998888887766
No 140
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=3.4e-16 Score=147.22 Aligned_cols=233 Identities=12% Similarity=0.146 Sum_probs=174.1
Q ss_pred ccceEEEecCCCCccccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCC
Q 037288 188 SSVSCIKLFGKHPSCATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTN 267 (513)
Q Consensus 188 s~i~si~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~ 267 (513)
+.|+|+++.+.. ..++++. .+|.+.+|.++.. ..+ .++.+.--..+|.++.|.|+
T Consensus 214 ~~I~sv~FHp~~----------plllvaG-----~d~~lrifqvDGk-----~N~-----~lqS~~l~~fPi~~a~f~p~ 268 (514)
T KOG2055|consen 214 GGITSVQFHPTA----------PLLLVAG-----LDGTLRIFQVDGK-----VNP-----KLQSIHLEKFPIQKAEFAPN 268 (514)
T ss_pred CCceEEEecCCC----------ceEEEec-----CCCcEEEEEecCc-----cCh-----hheeeeeccCccceeeecCC
Confidence 446666654444 4444444 4788888887732 222 24455556689999999999
Q ss_pred CC-EEEEEeCCe-EEEEECCCCcEEEEee---eC-CCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccC
Q 037288 268 PS-QAVIGTNLG-AAMVDMETGMASWVCR---SK-SDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHR 341 (513)
Q Consensus 268 g~-~l~s~s~~~-i~vwd~~~~~~~~~~~---~~-~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~ 341 (513)
|. .+++++... +..||+.+.+...+.. +. ..+.....++++++|+..+..|.|.+.-..+++.+.
T Consensus 269 G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~--------- 339 (514)
T KOG2055|consen 269 GHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELIT--------- 339 (514)
T ss_pred CceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhh---------
Confidence 99 666666655 8999999887655433 33 247788899999999999999999998877776533
Q ss_pred cCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCc
Q 037288 342 IPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNS 421 (513)
Q Consensus 342 ~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~ 421 (513)
.++..+.+..+ .|+.+++.|++++.+|.|.+||++ +..+++.+. ..+.
T Consensus 340 ----------------------------s~KieG~v~~~-~fsSdsk~l~~~~~~GeV~v~nl~--~~~~~~rf~-D~G~ 387 (514)
T KOG2055|consen 340 ----------------------------SFKIEGVVSDF-TFSSDSKELLASGGTGEVYVWNLR--QNSCLHRFV-DDGS 387 (514)
T ss_pred ----------------------------eeeeccEEeeE-EEecCCcEEEEEcCCceEEEEecC--CcceEEEEe-ecCc
Confidence 44445555554 556789999999999999999998 666888887 3455
Q ss_pred eeEEEEEEcCCCCEEEEEeCCCcEEEEeCCC------CeEEEEecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288 422 HTRIQLGVDQSERFVMSGGEDCKLRIWSIRS------GELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIH 486 (513)
Q Consensus 422 v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~------~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~ 486 (513)
+....++.+++|.|||+|+..|.|.|||..+ .+++..+..-...|+.++|+++..++|-++....
T Consensus 388 v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~k 458 (514)
T KOG2055|consen 388 VHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKK 458 (514)
T ss_pred cceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccc
Confidence 6667789999999999999999999999653 4677777666778999999999877776666555
No 141
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=1.1e-15 Score=150.09 Aligned_cols=236 Identities=12% Similarity=0.120 Sum_probs=174.2
Q ss_pred cccceEEEecCCCCccccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccc-cCcEEEEEEc
Q 037288 187 PSSVSCIKLFGKHPSCATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASF-KCTVWTADFC 265 (513)
Q Consensus 187 ~s~i~si~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~~~~s 265 (513)
|+.|.|+.++.+. ..+ ..+.++|.+-+|++...-.. ...+.++ ...|-.++|+
T Consensus 25 Ps~I~slA~s~kS----------~~l-----AvsRt~g~IEiwN~~~~w~~-----------~~vi~g~~drsIE~L~W~ 78 (691)
T KOG2048|consen 25 PSEIVSLAYSHKS----------NQL-----AVSRTDGNIEIWNLSNNWFL-----------EPVIHGPEDRSIESLAWA 78 (691)
T ss_pred ccceEEEEEeccC----------Cce-----eeeccCCcEEEEccCCCcee-----------eEEEecCCCCceeeEEEc
Confidence 6778888887655 221 23457888888887742211 1224444 4689999999
Q ss_pred CCCCEEEEEeCCeEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCe
Q 037288 266 TNPSQAVIGTNLGAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPY 344 (513)
Q Consensus 266 ~~g~~l~s~s~~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v 344 (513)
+.++++.++.++.|.-||+.++++...+. ..+.|++++.+|.+..++.|+.||.+..++...+.... -+.|...++.|
T Consensus 79 e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~-~r~l~rq~sRv 157 (691)
T KOG2048|consen 79 EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITY-KRSLMRQKSRV 157 (691)
T ss_pred cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEE-EeecccccceE
Confidence 99999999999999999999999888777 44569999999999999999999988777777665433 22333334444
Q ss_pred EEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceE--Ee---cCCC
Q 037288 345 SRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQ--SY---EGHV 419 (513)
Q Consensus 345 ~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~--~~---~~h~ 419 (513)
.++ .|++++..+++|+.||.|++||... ...+. +. ....
T Consensus 158 Lsl----------------------------------sw~~~~~~i~~Gs~Dg~Iriwd~~~--~~t~~~~~~~~d~l~k 201 (691)
T KOG2048|consen 158 LSL----------------------------------SWNPTGTKIAGGSIDGVIRIWDVKS--GQTLHIITMQLDRLSK 201 (691)
T ss_pred EEE----------------------------------EecCCccEEEecccCceEEEEEcCC--CceEEEeeeccccccc
Confidence 443 5667899999999999999999963 22222 11 1112
Q ss_pred -CceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288 420 -NSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIH 486 (513)
Q Consensus 420 -~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~ 486 (513)
.++-.+++.|-.+ ..|++|..-|+|.+||...+.+++....|.+.|.+++-.++...+.+++.|-.
T Consensus 202 ~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ 268 (691)
T KOG2048|consen 202 REPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPK 268 (691)
T ss_pred CCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCc
Confidence 3333455655544 47999999999999999999999999999999999999999776666666644
No 142
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=6.7e-16 Score=145.26 Aligned_cols=187 Identities=11% Similarity=0.097 Sum_probs=144.9
Q ss_pred CcEEEEEEcCCCCEEEEEeCCe-EEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccc
Q 037288 257 CTVWTADFCTNPSQAVIGTNLG-AAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSR 335 (513)
Q Consensus 257 ~~V~~~~~s~~g~~l~s~s~~~-i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~ 335 (513)
..+.....++++++|+..+..+ |.+.-..+++.+..+.-.+.|..+.|+.|+..|++.+.+|.|.+||++......
T Consensus 304 ~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~--- 380 (514)
T KOG2055|consen 304 KSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLH--- 380 (514)
T ss_pred chhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEE---
Confidence 4677888999999999776554 999999999999999999999999999999999999999999999999885432
Q ss_pred cccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceE-EEEEcCCCCEEEEEecCCeEEEEecCCC----Ccc
Q 037288 336 AGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISC-LQSLQLYDQYFLASSMDGTVKLYDHRLT----TRG 410 (513)
Q Consensus 336 ~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~s~s~dg~i~lwd~~~~----~~~ 410 (513)
.+...+.+.. ..+.+.++.+||+|+..|.|.|||.... ..+
T Consensus 381 ----------------------------------rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~Pk 426 (514)
T KOG2055|consen 381 ----------------------------------RFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPK 426 (514)
T ss_pred ----------------------------------EEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCC
Confidence 2222222211 1356789999999999999999996421 122
Q ss_pred ceEEecCCCCceeEEEEEEcCCCCEEEEEeC--CCcEEEEeCCCCeEEEEecCC---CCCeEEEEEcCCCceEEeeC
Q 037288 411 AVQSYEGHVNSHTRIQLGVDQSERFVMSGGE--DCKLRIWSIRSGELVFEDKFS---NSVPSAVCWRTQRSMGPQIE 482 (513)
Q Consensus 411 ~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~--Dg~v~vwd~~~~~~~~~~~~~---~~~v~~v~~~p~~~~~~t~~ 482 (513)
++.++..-...|+. +.|++|..+|+.+|. +..+++-.+.+......+... -+.|++++|+|.+-++|-+.
T Consensus 427 Pik~~dNLtt~Its--l~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGN 501 (514)
T KOG2055|consen 427 PIKTVDNLTTAITS--LQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGN 501 (514)
T ss_pred chhhhhhhheeeee--eeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeec
Confidence 67777666667766 899999999877765 778999999888877766543 35599999999855555443
No 143
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.72 E-value=5.7e-15 Score=148.30 Aligned_cols=296 Identities=15% Similarity=0.122 Sum_probs=203.3
Q ss_pred eeEEeccccCeEEEEEeecccccccceeEEeeeccccccccccccccCCCCCccccCcceeeecccceEEEecCCCCccc
Q 037288 124 DVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNKTESSKAPEHIWRLNKASILMPSSVSCIKLFGKHPSCA 203 (513)
Q Consensus 124 ~~l~tg~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~s~i~si~~~~~~~~~~ 203 (513)
+.++.|+..|.+.||++.+.... + . .-.+.+.|++|.-++..
T Consensus 173 NKIvvGs~~G~lql~Nvrt~K~v-----~-~----------------------------f~~~~s~IT~ieqsPaL---- 214 (910)
T KOG1539|consen 173 NKIVVGSSQGRLQLWNVRTGKVV-----Y-T----------------------------FQEFFSRITAIEQSPAL---- 214 (910)
T ss_pred eeEEEeecCCcEEEEEeccCcEE-----E-E----------------------------ecccccceeEeccCCcc----
Confidence 57889999999999999554311 1 1 01122555655543322
Q ss_pred cCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCE-EEEEeC-CeEEE
Q 037288 204 TDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQ-AVIGTN-LGAAM 281 (513)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~-l~s~s~-~~i~v 281 (513)
.. ++.+..+|.+.++++...... ..++--.+.|..++|..||.. +|+|.. |.+.+
T Consensus 215 ------DV-----VaiG~~~G~ViifNlK~dkil------------~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~ 271 (910)
T KOG1539|consen 215 ------DV-----VAIGLENGTVIIFNLKFDKIL------------MSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAF 271 (910)
T ss_pred ------eE-----EEEeccCceEEEEEcccCcEE------------EEEEccccceeEEEeccCCCeeEEeccCCceEEE
Confidence 22 233446888888887743332 223333489999999999985 455544 55999
Q ss_pred EECCCCcEEEEee--eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccc-cccccccCcCeEEEeeCC----eEE
Q 037288 282 VDMETGMASWVCR--SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCS-SRAGRRHRIPYSRLQRND----RVT 354 (513)
Q Consensus 282 wd~~~~~~~~~~~--~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~-~~~~~~h~~~v~~v~~~~----~~~ 354 (513)
||++..+.+.... |.+.|....|.|...++++++.|..+++|-.+++...+. ++.-.||..|..+|.|.. .++
T Consensus 272 wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~il 351 (910)
T KOG1539|consen 272 WDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFIL 351 (910)
T ss_pred EEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEE
Confidence 9999988777665 778899999999999999999999999886654443221 344567888777777653 222
Q ss_pred EeE------------------------------------------------------------------------eeccc
Q 037288 355 NEQ------------------------------------------------------------------------WFELK 362 (513)
Q Consensus 355 s~~------------------------------------------------------------------------w~~~~ 362 (513)
+.+ |+.+.
T Consensus 352 sa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n 431 (910)
T KOG1539|consen 352 SAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRN 431 (910)
T ss_pred ecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccC
Confidence 221 33322
Q ss_pred CcccceeEeecC------CCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEe---cCCCCceeEEEEEEcCCC
Q 037288 363 ANIWPSHTTFMP------SSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSY---EGHVNSHTRIQLGVDQSE 433 (513)
Q Consensus 363 ~~~~~~~~~~~~------~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~---~~h~~~v~~~~~~~s~~g 433 (513)
... ..+.+... ..+.+ ++.++.|++.+.|+..|.|-+|++. +.-...+| ..|..+|+. ++.+.-+
T Consensus 432 ~~~-G~~~L~~~~~~~~~~~~~a-v~vs~CGNF~~IG~S~G~Id~fNmQ--SGi~r~sf~~~~ah~~~V~g--la~D~~n 505 (910)
T KOG1539|consen 432 KTS-GRHVLDPKRFKKDDINATA-VCVSFCGNFVFIGYSKGTIDRFNMQ--SGIHRKSFGDSPAHKGEVTG--LAVDGTN 505 (910)
T ss_pred ccc-ccEEecCccccccCcceEE-EEEeccCceEEEeccCCeEEEEEcc--cCeeecccccCccccCceeE--EEecCCC
Confidence 211 11122111 23333 4678899999999999999999995 33356667 489999988 6777778
Q ss_pred CEEEEEeCCCcEEEEeCCCCeE-----------------------------------------EEEecCCCCCeEEEEEc
Q 037288 434 RFVMSGGEDCKLRIWSIRSGEL-----------------------------------------VFEDKFSNSVPSAVCWR 472 (513)
Q Consensus 434 ~~l~sg~~Dg~v~vwd~~~~~~-----------------------------------------~~~~~~~~~~v~~v~~~ 472 (513)
+.+++++.||.+++||.....+ ++.+.+|...|++++|+
T Consensus 506 ~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS 585 (910)
T KOG1539|consen 506 RLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFS 585 (910)
T ss_pred ceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeC
Confidence 8999999999999999875542 22345678899999999
Q ss_pred CCCceEEeeCCCee
Q 037288 473 TQRSMGPQIEGKIH 486 (513)
Q Consensus 473 p~~~~~~t~~~~~~ 486 (513)
|++..+++...|-.
T Consensus 586 ~DgrWlisasmD~t 599 (910)
T KOG1539|consen 586 PDGRWLISASMDST 599 (910)
T ss_pred CCCcEEEEeecCCc
Confidence 99998888888655
No 144
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=2.7e-16 Score=141.18 Aligned_cols=220 Identities=15% Similarity=0.118 Sum_probs=154.0
Q ss_pred EEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCcccccccc
Q 037288 259 VWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRA 336 (513)
Q Consensus 259 V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~ 336 (513)
..|+.|++.|.+||+|. +|.|.|||+.|....+++. |..+|++++|++||+.|++++.|..|.+||+..+.... .
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~---r 102 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLK---R 102 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCcee---E
Confidence 78999999999999985 6669999999988666665 88899999999999999999999999999999987532 2
Q ss_pred ccccCcCeEEEeeCC----eEEEeEeec-----ccC----cccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEe
Q 037288 337 GRRHRIPYSRLQRND----RVTNEQWFE-----LKA----NIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYD 403 (513)
Q Consensus 337 ~~~h~~~v~~v~~~~----~~~s~~w~~-----~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd 403 (513)
.....+|+...|+| ..++.-.+. .-+ ...+...-...+...+...|.+.|+++++|...|.+.++|
T Consensus 103 -irf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~ 181 (405)
T KOG1273|consen 103 -IRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYD 181 (405)
T ss_pred -EEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEe
Confidence 23467888888888 223222111 001 1111000000111122235888999999999999999999
Q ss_pred cCCCCccceEEecCCC-CceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-------eEE--EEecC--CCCCeEEEEE
Q 037288 404 HRLTTRGAVQSYEGHV-NSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSG-------ELV--FEDKF--SNSVPSAVCW 471 (513)
Q Consensus 404 ~~~~~~~~~~~~~~h~-~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~-------~~~--~~~~~--~~~~v~~v~~ 471 (513)
.. ...++..++--. ..+.. +.|+..|++|+.-+.|..|+.|+++.- ++- +.+.. ....=.+++|
T Consensus 182 a~--t~e~vas~rits~~~IK~--I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccf 257 (405)
T KOG1273|consen 182 AE--TLECVASFRITSVQAIKQ--IIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCF 257 (405)
T ss_pred cc--hheeeeeeeechheeeeE--EEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheee
Confidence 97 455777776444 44544 777888999999999999999998621 111 11111 1223457889
Q ss_pred cCCCceEEeeCCCee
Q 037288 472 RTQRSMGPQIEGKIH 486 (513)
Q Consensus 472 ~p~~~~~~t~~~~~~ 486 (513)
+.++.++..+....|
T Consensus 258 s~dgeYv~a~s~~aH 272 (405)
T KOG1273|consen 258 SGDGEYVCAGSARAH 272 (405)
T ss_pred cCCccEEEeccccce
Confidence 999777666666555
No 145
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=2e-15 Score=135.37 Aligned_cols=230 Identities=12% Similarity=0.092 Sum_probs=165.5
Q ss_pred eccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCc----EEEEee-eCCCeEEEEEec--CCcEEEEEeCCCeEEEE
Q 037288 252 VASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGM----ASWVCR-SKSDILAQQVIH--SGNVVLCGFRNGAIVTV 323 (513)
Q Consensus 252 ~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~----~~~~~~-~~~~V~~l~~~~--~~~~l~sg~~dg~i~iw 323 (513)
..+|.+-|.++.|.+.|+.+|+|+ |.+|+|||..... +....+ |.+.|..+.|.+ -|+++|+++.|+++.||
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 357889999999999999999885 5669999976544 222223 888899999986 47999999999999999
Q ss_pred ECCCC-------ccccccccccccCcCeEEEeeCC-----eEEEeE-------eecccC------------cccceeEee
Q 037288 324 DVRKR-------QRGCSSRAGRRHRIPYSRLQRND-----RVTNEQ-------WFELKA------------NIWPSHTTF 372 (513)
Q Consensus 324 d~~~~-------~~~~~~~~~~~h~~~v~~v~~~~-----~~~s~~-------w~~~~~------------~~~~~~~~~ 372 (513)
.=... +... ..++...+..|+.|.|.| .+++++ |+.... +........
T Consensus 89 EE~~~~~~~~~~~Wv~-~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~ 167 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVR-RTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGK 167 (361)
T ss_pred eecccccccccceeEE-EEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccc
Confidence 64211 1222 456778899999999999 455554 333221 101111111
Q ss_pred cCCCceEEEEEcC---CCCEEEEEecC-----CeEEEEecCCCCcc--ceEEecCCCCceeEEEEEEcCC-C---CEEEE
Q 037288 373 MPSSISCLQSLQL---YDQYFLASSMD-----GTVKLYDHRLTTRG--AVQSYEGHVNSHTRIQLGVDQS-E---RFVMS 438 (513)
Q Consensus 373 ~~~~v~~~~~~~~---~~~~l~s~s~d-----g~i~lwd~~~~~~~--~~~~~~~h~~~v~~~~~~~s~~-g---~~l~s 438 (513)
......|+ .+++ ...+||+|+.+ +.++||......++ .+.++.+|..+|+. ++|.|+ | ..|++
T Consensus 168 ~~~~~~Cv-sWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~d--i~wAPn~Gr~y~~lAv 244 (361)
T KOG2445|consen 168 NKQPCFCV-SWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRD--ISWAPNIGRSYHLLAV 244 (361)
T ss_pred ccCcceEE-eeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCccee--eeeccccCCceeeEEE
Confidence 22333444 4443 35688888866 57899977532222 56778899999988 888886 2 46899
Q ss_pred EeCCCcEEEEeCCCC--------------------eEEEEecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288 439 GGEDCKLRIWSIRSG--------------------ELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIH 486 (513)
Q Consensus 439 g~~Dg~v~vwd~~~~--------------------~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~ 486 (513)
++.|| |+||.+... +.+..+..|.+.|..++|+-.+.++++++.|-.
T Consensus 245 A~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~ 311 (361)
T KOG2445|consen 245 ATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGC 311 (361)
T ss_pred eecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCce
Confidence 99999 999998731 245557889999999999999999999999977
No 146
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=2.1e-15 Score=135.42 Aligned_cols=221 Identities=10% Similarity=0.037 Sum_probs=163.5
Q ss_pred cCcEEEEEEcCCCC-EEEEEeCCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCcccccc
Q 037288 256 KCTVWTADFCTNPS-QAVIGTNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSS 334 (513)
Q Consensus 256 ~~~V~~~~~s~~g~-~l~s~s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~ 334 (513)
.+.|..+.|+|.+. +|+++-|+.+++||+........+.|..++++++|.+ ...+++|+.||.|+.+|+.++..
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~---- 87 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNE---- 87 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccC-CceEEEeccCceEEEEEecCCcc----
Confidence 46899999998665 5556679999999999988888889999999999985 56789999999999999998863
Q ss_pred ccccccCcCeEEEeeCC---eEEEeEeecccCccc-----ceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCC
Q 037288 335 RAGRRHRIPYSRLQRND---RVTNEQWFELKANIW-----PSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRL 406 (513)
Q Consensus 335 ~~~~~h~~~v~~v~~~~---~~~s~~w~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~ 406 (513)
..+-.|..+|.+|.+.+ .+++|+||..-.-.. ....+.....|.+ .+-.++.|++|+.|..|.+||+|.
T Consensus 88 ~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~---~~v~g~~LvVg~~~r~v~iyDLRn 164 (323)
T KOG1036|consen 88 DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYC---MDVSGNRLVVGTSDRKVLIYDLRN 164 (323)
T ss_pred eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEE---EeccCCEEEEeecCceEEEEEccc
Confidence 36778999999999997 899999664322111 1122222334444 455789999999999999999994
Q ss_pred CCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC----eEEEEecCC---------CCCeEEEEEcC
Q 037288 407 TTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSG----ELVFEDKFS---------NSVPSAVCWRT 473 (513)
Q Consensus 407 ~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~----~~~~~~~~~---------~~~v~~v~~~p 473 (513)
... +.+..+ ..-.+...++++-|++.=.++++-||.|.+=.+... +.-..++.| -.||++++|+|
T Consensus 165 ~~~-~~q~re-S~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp 242 (323)
T KOG1036|consen 165 LDE-PFQRRE-SSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHP 242 (323)
T ss_pred ccc-hhhhcc-ccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecc
Confidence 321 222111 221222344677787777888999999988766655 333445555 24799999999
Q ss_pred CCceEEeeCCCee
Q 037288 474 QRSMGPQIEGKIH 486 (513)
Q Consensus 474 ~~~~~~t~~~~~~ 486 (513)
-...|||.+.|-.
T Consensus 243 ~~~tfaTgGsDG~ 255 (323)
T KOG1036|consen 243 IHGTFATGGSDGI 255 (323)
T ss_pred ccceEEecCCCce
Confidence 9999999998866
No 147
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=3.3e-15 Score=134.23 Aligned_cols=233 Identities=12% Similarity=0.109 Sum_probs=157.3
Q ss_pred eccccCcEEEEEEcCCCCEEEEEeC-CeEEEEECCCCcEEEEeeeCCCeEEEEEecCC-cEEEEEeCCCeEEEEECCCCc
Q 037288 252 VASFKCTVWTADFCTNPSQAVIGTN-LGAAMVDMETGMASWVCRSKSDILAQQVIHSG-NVVLCGFRNGAIVTVDVRKRQ 329 (513)
Q Consensus 252 ~~~h~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~~ 329 (513)
+.+|..+|.+++||++|+.|++++. ..|.+||+..|.++..+...++|+.+.|+|.. +..++.-.+..-.+.++..+.
T Consensus 61 lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~ 140 (405)
T KOG1273|consen 61 LSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK 140 (405)
T ss_pred hhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCc
Confidence 6788899999999999999998864 56999999999999999999999999999955 555555555556666666543
Q ss_pred cccccccc-cccCcC-eEEEeeCC---eEEEeE-------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCC
Q 037288 330 RGCSSRAG-RRHRIP-YSRLQRND---RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDG 397 (513)
Q Consensus 330 ~~~~~~~~-~~h~~~-v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg 397 (513)
... +..- .+.... -.+..|.+ .+++|. ++..+-++.....+.....|..+ .++..|..|+.-+.|.
T Consensus 141 h~~-Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I-~~s~~g~~liiNtsDR 218 (405)
T KOG1273|consen 141 HSV-LPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQI-IVSRKGRFLIINTSDR 218 (405)
T ss_pred eee-ccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEE-EEeccCcEEEEecCCc
Confidence 211 1110 111111 11223444 667765 33333333322222222344443 6788999999999999
Q ss_pred eEEEEecCCCCc----c---ceEEecCCCCceeEEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCeEEEEecCCC-CCeEE
Q 037288 398 TVKLYDHRLTTR----G---AVQSYEGHVNSHTRIQLGVDQSERFVMSGGE-DCKLRIWSIRSGELVFEDKFSN-SVPSA 468 (513)
Q Consensus 398 ~i~lwd~~~~~~----~---~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~-Dg~v~vwd~~~~~~~~~~~~~~-~~v~~ 468 (513)
.|+.|+++.... + +.+.++.-.+...--+++|+.+|.|+++|+. -..++||.-..|.+++.+.+.. .....
T Consensus 219 vIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~D 298 (405)
T KOG1273|consen 219 VIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLD 298 (405)
T ss_pred eEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheee
Confidence 999999862111 1 2233332223222234789999999988775 4569999999999999997765 55788
Q ss_pred EEEcCCCceEEeeCCCee
Q 037288 469 VCWRTQRSMGPQIEGKIH 486 (513)
Q Consensus 469 v~~~p~~~~~~t~~~~~~ 486 (513)
+.|+|-..++++...+.-
T Consensus 299 V~whp~rp~i~si~sg~v 316 (405)
T KOG1273|consen 299 VNWHPVRPIIASIASGVV 316 (405)
T ss_pred cccccceeeeeeccCCce
Confidence 999999888888766644
No 148
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.69 E-value=4.4e-14 Score=136.50 Aligned_cols=237 Identities=9% Similarity=0.039 Sum_probs=155.7
Q ss_pred CCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEE-EEEe-CCeEEEEECCCCcEEEEeeeCCCe
Q 037288 222 TGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQA-VIGT-NLGAAMVDMETGMASWVCRSKSDI 299 (513)
Q Consensus 222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l-~s~s-~~~i~vwd~~~~~~~~~~~~~~~V 299 (513)
.+|.+.+|++.+.. .+..+..+ ..+.+++|+|++..+ +++. ++.|++||+.+++....+.....+
T Consensus 9 ~d~~v~~~d~~t~~------------~~~~~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~ 75 (300)
T TIGR03866 9 KDNTISVIDTATLE------------VTRTFPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDP 75 (300)
T ss_pred CCCEEEEEECCCCc------------eEEEEECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCc
Confidence 46677777765432 12334444 346789999999876 4543 566999999998877666544556
Q ss_pred EEEEEecCCcEEEEE-eCCCeEEEEECCCCccccccccccccCcCeEEEeeCC---eEEEeE--------eecccCcccc
Q 037288 300 LAQQVIHSGNVVLCG-FRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ--------WFELKANIWP 367 (513)
Q Consensus 300 ~~l~~~~~~~~l~sg-~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~--------w~~~~~~~~~ 367 (513)
..++|+|+++.++++ ..|+.|++||+++.+.. ..+.. ...+.++.|+| .++++. |+...+...
T Consensus 76 ~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~---~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~- 150 (300)
T TIGR03866 76 ELFALHPNGKILYIANEDDNLVTVIDIETRKVL---AEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIV- 150 (300)
T ss_pred cEEEECCCCCEEEEEcCCCCeEEEEECCCCeEE---eEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEE-
Confidence 788999999876554 56899999999876542 23332 23457788888 344333 344333221
Q ss_pred eeEeecCCCceEEEEEcCCCCEEEEE-ecCCeEEEEecCCCCccceEEecCC-----CCceeEEEEEEcCCCCEEEE-Ee
Q 037288 368 SHTTFMPSSISCLQSLQLYDQYFLAS-SMDGTVKLYDHRLTTRGAVQSYEGH-----VNSHTRIQLGVDQSERFVMS-GG 440 (513)
Q Consensus 368 ~~~~~~~~~v~~~~~~~~~~~~l~s~-s~dg~i~lwd~~~~~~~~~~~~~~h-----~~~v~~~~~~~s~~g~~l~s-g~ 440 (513)
..........+ ..+++++++|+++ ..++.|++||+. ....+..+..+ ........++|+|++++++. .+
T Consensus 151 -~~~~~~~~~~~-~~~s~dg~~l~~~~~~~~~v~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~ 226 (300)
T TIGR03866 151 -DNVLVDQRPRF-AEFTADGKELWVSSEIGGTVSVIDVA--TRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALG 226 (300)
T ss_pred -EEEEcCCCccE-EEECCCCCEEEEEcCCCCEEEEEEcC--cceeeeeeeecccccccccCCccceEECCCCCEEEEEcC
Confidence 12222333334 4788999988655 469999999997 33344444322 12222334789999998654 45
Q ss_pred CCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEee
Q 037288 441 EDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQI 481 (513)
Q Consensus 441 ~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~ 481 (513)
.++.|.+||+.+++.+..+.. ...+.+++|+|++..+++.
T Consensus 227 ~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~ 266 (300)
T TIGR03866 227 PANRVAVVDAKTYEVLDYLLV-GQRVWQLAFTPDEKYLLTT 266 (300)
T ss_pred CCCeEEEEECCCCcEEEEEEe-CCCcceEEECCCCCEEEEE
Confidence 577899999999988776543 4568999999997665544
No 149
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.68 E-value=6.6e-15 Score=138.56 Aligned_cols=275 Identities=13% Similarity=0.103 Sum_probs=193.6
Q ss_pred EecCCCCccccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCC--CEE
Q 037288 194 KLFGKHPSCATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNP--SQA 271 (513)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g--~~l 271 (513)
++......++.+||....-+ +..++..|.+.+|++..... ....+..+..|..+|.++.|+|.. +.+
T Consensus 183 kv~~~Rit~l~fHPt~~~~l---va~GdK~G~VG~Wn~~~~~~--------d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ 251 (498)
T KOG4328|consen 183 KVTDRRITSLAFHPTENRKL---VAVGDKGGQVGLWNFGTQEK--------DKDGVYLFTPHSGPVSGLKFSPANTSQIY 251 (498)
T ss_pred EecccceEEEEecccCcceE---EEEccCCCcEEEEecCCCCC--------ccCceEEeccCCccccceEecCCChhhee
Confidence 33444444445555533222 23467889999999862211 122466788999999999999943 466
Q ss_pred EEEeCCeEEEEECCCCcEEEEeee---CCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEe
Q 037288 272 VIGTNLGAAMVDMETGMASWVCRS---KSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQ 348 (513)
Q Consensus 272 ~s~s~~~i~vwd~~~~~~~~~~~~---~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~ 348 (513)
+++.||+|++-|++++....++.. ...+.+++|+.+...++.|..=|...+||+|.+... +..+.-|...|.+++
T Consensus 252 ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~--~~~~~lh~kKI~sv~ 329 (498)
T KOG4328|consen 252 SSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSE--YENLRLHKKKITSVA 329 (498)
T ss_pred eeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCcc--chhhhhhhcccceee
Confidence 677899999999998753333332 233688889888777777777779999999988752 457788989999999
Q ss_pred eCC----eEEEeE-------eecccCcccce---eEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCC--Cccce
Q 037288 349 RND----RVTNEQ-------WFELKANIWPS---HTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLT--TRGAV 412 (513)
Q Consensus 349 ~~~----~~~s~~-------w~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~--~~~~~ 412 (513)
++| .+++++ ||.+.-..+.. .+..|...|.+ +.|+|.+-.|++.+.|..|+|||.... ...+.
T Consensus 330 ~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~s-AyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~ 408 (498)
T KOG4328|consen 330 LNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNS-AYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPL 408 (498)
T ss_pred cCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeee-eEEcCCCCceEeeccCCceEEeecccccccCCcc
Confidence 999 667776 99987766653 34445555555 589999888999999999999997311 11244
Q ss_pred EEec---CCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCC-Ce-EEEEEcCCCc-eEEeeC
Q 037288 413 QSYE---GHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNS-VP-SAVCWRTQRS-MGPQIE 482 (513)
Q Consensus 413 ~~~~---~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~-~v-~~v~~~p~~~-~~~t~~ 482 (513)
.++. .+....+.+...|+|+..++++|-.-..|-|+|-..++.+..+..... .| .-..|+|-+. +++.++
T Consensus 409 ~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~ 484 (498)
T KOG4328|consen 409 GTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGN 484 (498)
T ss_pred ceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCC
Confidence 4443 122344556789999999999999999999999999998888644332 33 4468999966 444333
No 150
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.68 E-value=4e-15 Score=145.28 Aligned_cols=257 Identities=16% Similarity=0.151 Sum_probs=158.3
Q ss_pred CCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEE-eCCeEEEEEC
Q 037288 206 GGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIG-TNLGAAMVDM 284 (513)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~-s~~~i~vwd~ 284 (513)
+|...|++.. +..+|.+.+++...... .+..+ .+.....|.+.|.++.|-|-...|+++ +|.++++||+
T Consensus 60 ~~n~eHiLav----adE~G~i~l~dt~~~~f-----r~ee~-~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdv 129 (720)
T KOG0321|consen 60 APNKEHILAV----ADEDGGIILFDTKSIVF-----RLEER-QLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDV 129 (720)
T ss_pred CCCccceEEE----ecCCCceeeecchhhhc-----chhhh-hhcccccccceeEeeccCCCceeEEEccCCceeeeeee
Confidence 4454555433 34788888877653221 11111 234467899999999999955566666 5667999999
Q ss_pred CCCcEEEE---eeeCCCeEEEEEecCC-cEEEEEeCCCeEEEEECCCCcccc----ccccccccCcCeEEEeeCCeEEEe
Q 037288 285 ETGMASWV---CRSKSDILAQQVIHSG-NVVLCGFRNGAIVTVDVRKRQRGC----SSRAGRRHRIPYSRLQRNDRVTNE 356 (513)
Q Consensus 285 ~~~~~~~~---~~~~~~V~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~----~~~~~~~h~~~v~~v~~~~~~~s~ 356 (513)
.++++... ++|...|.+++|.|.. .+|++|++||.|.|||++...... .......|...-.- -.| +..
T Consensus 130 k~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptp--skp--~~k 205 (720)
T KOG0321|consen 130 KTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTP--SKP--LKK 205 (720)
T ss_pred ccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCC--Cch--hhc
Confidence 99886543 5699999999999966 799999999999999998765211 00111223221000 000 000
Q ss_pred E---eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEec-CCeEEEEecCCCCcc----ce--EEecCC-CCceeEE
Q 037288 357 Q---WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSM-DGTVKLYDHRLTTRG----AV--QSYEGH-VNSHTRI 425 (513)
Q Consensus 357 ~---w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~-dg~i~lwd~~~~~~~----~~--~~~~~h-~~~v~~~ 425 (513)
. |.. ......+.|+. +.| .|...||+++. |+.|++||+|..... +. ..+..| ...+-..
T Consensus 206 r~~k~kA--------~s~ti~ssvTv-v~f-kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~ 275 (720)
T KOG0321|consen 206 RIRKWKA--------ASNTIFSSVTV-VLF-KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQV 275 (720)
T ss_pred ccccccc--------ccCceeeeeEE-EEE-eccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeE
Confidence 0 000 00001112332 333 48889999888 999999999954321 22 222223 1133334
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCe--EEEEecCCC--CCeEEEEEcCCCceEEeeCCCee
Q 037288 426 QLGVDQSERFVMSGGEDCKLRIWSIRSGE--LVFEDKFSN--SVPSAVCWRTQRSMGPQIEGKIH 486 (513)
Q Consensus 426 ~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~--~~~~~~~~~--~~v~~v~~~p~~~~~~t~~~~~~ 486 (513)
.+..+..|.+|++.+.|+.|++||+.+-. ++..+.++. .--..-..+|++..+++...+-+
T Consensus 276 nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ 340 (720)
T KOG0321|consen 276 NLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQ 340 (720)
T ss_pred EEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcc
Confidence 57778889999999999999999998643 333443332 11223456788888888877765
No 151
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.68 E-value=1.9e-14 Score=128.09 Aligned_cols=194 Identities=15% Similarity=0.239 Sum_probs=140.4
Q ss_pred cccCcEEEEEEcC-CCCEEEEEeCC-eEEEEECCCCc----EEEEeeeCCCeEEEEEecCC-cEEEEEeCCCeEEEEECC
Q 037288 254 SFKCTVWTADFCT-NPSQAVIGTNL-GAAMVDMETGM----ASWVCRSKSDILAQQVIHSG-NVVLCGFRNGAIVTVDVR 326 (513)
Q Consensus 254 ~h~~~V~~~~~s~-~g~~l~s~s~~-~i~vwd~~~~~----~~~~~~~~~~V~~l~~~~~~-~~l~sg~~dg~i~iwd~~ 326 (513)
.|..++++.+|+. +.+++.+++=+ +..|||++++. ...++.|..+|..++|...+ +++++.+.||.|++||+|
T Consensus 148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR 227 (364)
T KOG0290|consen 148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLR 227 (364)
T ss_pred ccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEec
Confidence 4567999999997 67788777644 58999999973 34567799999999999876 799999999999999999
Q ss_pred CCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecC-CeEEEEecC
Q 037288 327 KRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMD-GTVKLYDHR 405 (513)
Q Consensus 327 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~d-g~i~lwd~~ 405 (513)
.......+-.-.....+. ..+.+...+.+++|+-.+| ..|.|.|+|
T Consensus 228 ~leHSTIIYE~p~~~~pL---------------------------------lRLswnkqDpnymATf~~dS~~V~iLDiR 274 (364)
T KOG0290|consen 228 SLEHSTIIYEDPSPSTPL---------------------------------LRLSWNKQDPNYMATFAMDSNKVVILDIR 274 (364)
T ss_pred ccccceEEecCCCCCCcc---------------------------------eeeccCcCCchHHhhhhcCCceEEEEEec
Confidence 876422000000111222 2223334567788876654 569999999
Q ss_pred CCCccceEEecCCCCceeEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCe------EEEEecCCCCCeEEEEEcCC-Cce
Q 037288 406 LTTRGAVQSYEGHVNSHTRIQLGVDQS-ERFVMSGGEDCKLRIWSIRSGE------LVFEDKFSNSVPSAVCWRTQ-RSM 477 (513)
Q Consensus 406 ~~~~~~~~~~~~h~~~v~~~~~~~s~~-g~~l~sg~~Dg~v~vwd~~~~~------~~~~~~~~~~~v~~v~~~p~-~~~ 477 (513)
.+ ..++..+++|.+.|.. ++|.|. ..+|+++|.|..+.+||+.+.- ++..+. .++.|+.+.|++. +..
T Consensus 275 ~P-~tpva~L~~H~a~VNg--IaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dw 350 (364)
T KOG0290|consen 275 VP-CTPVARLRNHQASVNG--IAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDW 350 (364)
T ss_pred CC-CcceehhhcCcccccc--eEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCE
Confidence 42 2388999999999988 888885 5789999999999999997532 333344 3667999999977 445
Q ss_pred EEeeCCC
Q 037288 478 GPQIEGK 484 (513)
Q Consensus 478 ~~t~~~~ 484 (513)
++-+.++
T Consensus 351 iai~~~k 357 (364)
T KOG0290|consen 351 IAICFGK 357 (364)
T ss_pred EEEEecC
Confidence 5544443
No 152
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=6.1e-17 Score=159.84 Aligned_cols=194 Identities=19% Similarity=0.276 Sum_probs=163.0
Q ss_pred EEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCC---eEEE
Q 037288 279 AAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND---RVTN 355 (513)
Q Consensus 279 i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s 355 (513)
+++||.+. ...|...|.++..-..++.+++|+.|..+-+|.+..... +..+.+|..+|.++.|+. .+.+
T Consensus 16 Lr~~~~~~-----~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~---i~S~~~hespIeSl~f~~~E~Llaa 87 (825)
T KOG0267|consen 16 LRVWDTRE-----FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNA---ITSLTGHESPIESLTFDTSERLLAA 87 (825)
T ss_pred cccccchh-----hhhhhhhhceeeeeccceeeccCCCceeeccccccCCch---hheeeccCCcceeeecCcchhhhcc
Confidence 66777652 234677788888867789999999999999999977665 347999999999999998 3444
Q ss_pred eE-------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEE
Q 037288 356 EQ-------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLG 428 (513)
Q Consensus 356 ~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~ 428 (513)
|+ ||+..++..- ....|...+.++ .|+|.+.+++.|+.|+.+++||+| ..+|.+.+.+|...+.+ +.
T Consensus 88 gsasgtiK~wDleeAk~vr-tLtgh~~~~~sv-~f~P~~~~~a~gStdtd~~iwD~R--k~Gc~~~~~s~~~vv~~--l~ 161 (825)
T KOG0267|consen 88 GSASGTIKVWDLEEAKIVR-TLTGHLLNITSV-DFHPYGEFFASGSTDTDLKIWDIR--KKGCSHTYKSHTRVVDV--LR 161 (825)
T ss_pred cccCCceeeeehhhhhhhh-hhhccccCccee-eeccceEEeccccccccceehhhh--ccCceeeecCCcceeEE--Ee
Confidence 43 9998776432 122344556665 599999999999999999999998 77899999999998877 88
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288 429 VDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIH 486 (513)
Q Consensus 429 ~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~ 486 (513)
|+|+|+|+++|++|.+++|||+..|+.+.+|+.|...+..+.|+|...++++.+.|--
T Consensus 162 lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~t 219 (825)
T KOG0267|consen 162 LSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRT 219 (825)
T ss_pred ecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCce
Confidence 9999999999999999999999999999999999999999999999999999888855
No 153
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.67 E-value=2.3e-15 Score=141.21 Aligned_cols=179 Identities=17% Similarity=0.141 Sum_probs=135.6
Q ss_pred CCCEEEEEeCC-eEEEEECCCCc---EEEEe-------------------eeCCCeEEEEEecCC-cEEEEEeCCCeEEE
Q 037288 267 NPSQAVIGTNL-GAAMVDMETGM---ASWVC-------------------RSKSDILAQQVIHSG-NVVLCGFRNGAIVT 322 (513)
Q Consensus 267 ~g~~l~s~s~~-~i~vwd~~~~~---~~~~~-------------------~~~~~V~~l~~~~~~-~~l~sg~~dg~i~i 322 (513)
-|+++|.|.-+ .|.|||+.-.. +..++ .|...|.+++|+..- ++||+|+.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 36799999754 59999986321 11111 266678899998754 89999999999999
Q ss_pred EECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEE
Q 037288 323 VDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLY 402 (513)
Q Consensus 323 wd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lw 402 (513)
||+.++++.. .+..|.+.|.++.|+| ....+|++|+.|++|.+.
T Consensus 271 WD~~~g~p~~---s~~~~~k~Vq~l~wh~---------------------------------~~p~~LLsGs~D~~V~l~ 314 (463)
T KOG0270|consen 271 WDVDTGKPKS---SITHHGKKVQTLEWHP---------------------------------YEPSVLLSGSYDGTVALK 314 (463)
T ss_pred EEcCCCCcce---ehhhcCCceeEEEecC---------------------------------CCceEEEeccccceEEee
Confidence 9999998744 6667778887776644 467899999999999999
Q ss_pred ecCCCCcc-ceEEecCCCCceeEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCC-eEEEEecCCCCCeEEEEEcCC-CceE
Q 037288 403 DHRLTTRG-AVQSYEGHVNSHTRIQLGVDQS-ERFVMSGGEDCKLRIWSIRSG-ELVFEDKFSNSVPSAVCWRTQ-RSMG 478 (513)
Q Consensus 403 d~~~~~~~-~~~~~~~h~~~v~~~~~~~s~~-g~~l~sg~~Dg~v~vwd~~~~-~~~~~~~~~~~~v~~v~~~p~-~~~~ 478 (513)
|+|..... ..-.+. +.|.. +.|+|. ...++++..||+|+-+|++.. +++.+++.|+++|.++++++. ..++
T Consensus 315 D~R~~~~s~~~wk~~---g~VEk--v~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l 389 (463)
T KOG0270|consen 315 DCRDPSNSGKEWKFD---GEVEK--VAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLL 389 (463)
T ss_pred eccCccccCceEEec---cceEE--EEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcce
Confidence 99932111 222333 34555 778775 456778889999999999985 999999999999999999998 5667
Q ss_pred EeeCCCee
Q 037288 479 PQIEGKIH 486 (513)
Q Consensus 479 ~t~~~~~~ 486 (513)
+|.+.+--
T Consensus 390 ~t~s~d~~ 397 (463)
T KOG0270|consen 390 STASTDKV 397 (463)
T ss_pred eeccccce
Confidence 77665544
No 154
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=2.5e-15 Score=145.59 Aligned_cols=230 Identities=9% Similarity=0.052 Sum_probs=166.2
Q ss_pred eeEEeccccCcEEEEEEcCCCCEEEEEeCCe-EEEEECCCCcEEEEeeeCCCeEEEEEecCCc--EEEEEeCCCeEEEEE
Q 037288 248 TMHLVASFKCTVWTADFCTNPSQAVIGTNLG-AAMVDMETGMASWVCRSKSDILAQQVIHSGN--VVLCGFRNGAIVTVD 324 (513)
Q Consensus 248 ~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~~-i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~--~l~sg~~dg~i~iwd 324 (513)
+-..+.||++.|.++...|.|.+|++|++++ |+||.+.||++++.....+.|.||+|+|.+. +||++-.+ .+.|-+
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~-~~~ivn 470 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGE-CVLIVN 470 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecC-ceEEeC
Confidence 4567899999999999999999999998765 9999999999999999999999999999873 55555433 355555
Q ss_pred CCCCcccc----------------------------------ccccccccCcCeEEEeeCC--eEEEeE-----------
Q 037288 325 VRKRQRGC----------------------------------SSRAGRRHRIPYSRLQRND--RVTNEQ----------- 357 (513)
Q Consensus 325 ~~~~~~~~----------------------------------~~~~~~~h~~~v~~v~~~~--~~~s~~----------- 357 (513)
..-+.... .+.....|...|..+.|+. .+++..
T Consensus 471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vli 550 (733)
T KOG0650|consen 471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLI 550 (733)
T ss_pred ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEE
Confidence 43221000 0112234566777788877 222221
Q ss_pred eecccCcccceeEeec-CCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEE
Q 037288 358 WFELKANIWPSHTTFM-PSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFV 436 (513)
Q Consensus 358 w~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l 436 (513)
.++.... ....+.. .+.+.+ +.|+|...+|++++.. .|++||+- ....++.+......+.. ++++|.|..|
T Consensus 551 HQLSK~~--sQ~PF~kskG~vq~-v~FHPs~p~lfVaTq~-~vRiYdL~--kqelvKkL~tg~kwiS~--msihp~GDnl 622 (733)
T KOG0650|consen 551 HQLSKRK--SQSPFRKSKGLVQR-VKFHPSKPYLFVATQR-SVRIYDLS--KQELVKKLLTGSKWISS--MSIHPNGDNL 622 (733)
T ss_pred Eeccccc--ccCchhhcCCceeE-EEecCCCceEEEEecc-ceEEEehh--HHHHHHHHhcCCeeeee--eeecCCCCeE
Confidence 1211111 1112222 233444 5889999999998864 89999995 43366666655555555 8889999999
Q ss_pred EEEeCCCcEEEEeCCCC-eEEEEecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288 437 MSGGEDCKLRIWSIRSG-ELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIH 486 (513)
Q Consensus 437 ~sg~~Dg~v~vwd~~~~-~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~ 486 (513)
+.|+.|+.+..+|+.-. ++.+++..|...+++|+|++...+|+++..|-.
T Consensus 623 i~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgt 673 (733)
T KOG0650|consen 623 ILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGT 673 (733)
T ss_pred EEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCc
Confidence 99999999999999754 677889999999999999999988888887544
No 155
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.67 E-value=2.2e-15 Score=133.79 Aligned_cols=161 Identities=15% Similarity=0.129 Sum_probs=130.6
Q ss_pred cccCcEEEEEEcC--CCCEEEEEeCCeEEEEECCCCcEEEEee--eCCCeEEEEEecCC-cEEEEEeCCCeEEEEECCCC
Q 037288 254 SFKCTVWTADFCT--NPSQAVIGTNLGAAMVDMETGMASWVCR--SKSDILAQQVIHSG-NVVLCGFRNGAIVTVDVRKR 328 (513)
Q Consensus 254 ~h~~~V~~~~~s~--~g~~l~s~s~~~i~vwd~~~~~~~~~~~--~~~~V~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~ 328 (513)
+|+....+-+|+| +|..+++.++.++..||+++..+...+. |...|..++|+|+. .+|++|+.||.|++||.|..
T Consensus 168 e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t 247 (370)
T KOG1007|consen 168 EMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT 247 (370)
T ss_pred cccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCC
Confidence 3667888899998 8999999999999999999988777665 66779999999987 68999999999999999987
Q ss_pred ccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCC-
Q 037288 329 QRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLT- 407 (513)
Q Consensus 329 ~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~- 407 (513)
+. + ++.+.+|...|.++.|+| ...+++++|+.|..|.+|.....
T Consensus 248 k~-p-v~el~~HsHWvW~VRfn~---------------------------------~hdqLiLs~~SDs~V~Lsca~svS 292 (370)
T KOG1007|consen 248 KF-P-VQELPGHSHWVWAVRFNP---------------------------------EHDQLILSGGSDSAVNLSCASSVS 292 (370)
T ss_pred Cc-c-ccccCCCceEEEEEEecC---------------------------------ccceEEEecCCCceeEEEeccccc
Confidence 64 3 789999999999998876 23567777777777777754321
Q ss_pred --------------------------CccceEEecCCCCceeEEEEEEcCCCCEE-EEEeCCCcEEEEeCC
Q 037288 408 --------------------------TRGAVQSYEGHVNSHTRIQLGVDQSERFV-MSGGEDCKLRIWSIR 451 (513)
Q Consensus 408 --------------------------~~~~~~~~~~h~~~v~~~~~~~s~~g~~l-~sg~~Dg~v~vwd~~ 451 (513)
..+.+.+|..|.+.|++ ++|+.-+.|+ ++-++||.+.|=++.
T Consensus 293 SE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~--~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 293 SEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYA--LAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred cccccccccccccCcchhhHHhcccccccccccccccccceEE--EeeccCCCeeEEEeccCceEEeecCC
Confidence 22356789999999988 8898766664 677899999887664
No 156
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.67 E-value=1.6e-14 Score=142.31 Aligned_cols=231 Identities=10% Similarity=0.094 Sum_probs=169.6
Q ss_pred eccccCcEEEEEEcCCCC-EEEEEeCCeEEEEECCCCcEEEE----ee----eCCCeEEEEEecCCcEEEEEeCCCeEEE
Q 037288 252 VASFKCTVWTADFCTNPS-QAVIGTNLGAAMVDMETGMASWV----CR----SKSDILAQQVIHSGNVVLCGFRNGAIVT 322 (513)
Q Consensus 252 ~~~h~~~V~~~~~s~~g~-~l~s~s~~~i~vwd~~~~~~~~~----~~----~~~~V~~l~~~~~~~~l~sg~~dg~i~i 322 (513)
+.||++-|+++.|+|.+. +|.+.+|.++.+|...+..-++. ++ .....+...|+|+++.+++-+..|-.++
T Consensus 263 l~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hl 342 (764)
T KOG1063|consen 263 LMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHL 342 (764)
T ss_pred hcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEE
Confidence 679999999999999995 55555788899997665532221 11 2334889999999999999999999999
Q ss_pred EECCCCc-cccccccccccCcCeEEEeeCC---eEEEeEeecc------cCcccceeE----eecCCCceEEEEEcCCCC
Q 037288 323 VDVRKRQ-RGCSSRAGRRHRIPYSRLQRND---RVTNEQWFEL------KANIWPSHT----TFMPSSISCLQSLQLYDQ 388 (513)
Q Consensus 323 wd~~~~~-~~~~~~~~~~h~~~v~~v~~~~---~~~s~~w~~~------~~~~~~~~~----~~~~~~v~~~~~~~~~~~ 388 (513)
|...... ... .....||.+.|..++|+| .+++.+-|.. -++...-+. -.|....+|+.... ...
T Consensus 343 Wkt~d~~~w~~-~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn-~~~ 420 (764)
T KOG1063|consen 343 WKTKDKTFWTQ-EPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVN-EDL 420 (764)
T ss_pred EeccCccceee-ccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehcc-CCc
Confidence 9833322 222 447789999999999999 5666652211 111111122 23445677775554 366
Q ss_pred EEEEEecCCeEEEEecCCC-------------------------------------------------------------
Q 037288 389 YFLASSMDGTVKLYDHRLT------------------------------------------------------------- 407 (513)
Q Consensus 389 ~l~s~s~dg~i~lwd~~~~------------------------------------------------------------- 407 (513)
.|++|.....+++|+....
T Consensus 421 ~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L 500 (764)
T KOG1063|consen 421 QFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCEL 500 (764)
T ss_pred eeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhc
Confidence 7888888888999976421
Q ss_pred -------------CccceEEecCCCCceeEEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCeEEEEecCCCCCeEEE
Q 037288 408 -------------TRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGED-----CKLRIWSIRSGELVFEDKFSNSVPSAV 469 (513)
Q Consensus 408 -------------~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~D-----g~v~vwd~~~~~~~~~~~~~~~~v~~v 469 (513)
....++.+-||...|++ ++.+|+|+++++++.. ..|++|+..+...++.+..|.-.|+.+
T Consensus 501 ~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~--l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l 578 (764)
T KOG1063|consen 501 TEPPTEDQLQQNTLWPEVHKLYGHGYEVYA--LAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRL 578 (764)
T ss_pred cCCChHHHHHHhccchhhHHhccCceeEEE--EEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEE
Confidence 00012445688888877 8889999999999864 358999999999999999999999999
Q ss_pred EEcCCCceEEeeCCCee
Q 037288 470 CWRTQRSMGPQIEGKIH 486 (513)
Q Consensus 470 ~~~p~~~~~~t~~~~~~ 486 (513)
+|+|++.++++.++|-.
T Consensus 579 ~FSpdg~~LLsvsRDRt 595 (764)
T KOG1063|consen 579 AFSPDGRYLLSVSRDRT 595 (764)
T ss_pred EECCCCcEEEEeecCce
Confidence 99999999999998866
No 157
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=5.7e-15 Score=139.38 Aligned_cols=182 Identities=17% Similarity=0.162 Sum_probs=145.7
Q ss_pred CCCEEEEEeCC--eEEEEECCCCcEEE-EeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcC
Q 037288 267 NPSQAVIGTNL--GAAMVDMETGMASW-VCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIP 343 (513)
Q Consensus 267 ~g~~l~s~s~~--~i~vwd~~~~~~~~-~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~ 343 (513)
++.+++++.-. .+.+|.+....... ...-++.|.|++-+|+|.+|+.|+..|.+++|.+.++.. +..+.+|..+
T Consensus 49 ~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~L---L~v~~aHYQ~ 125 (476)
T KOG0646|consen 49 NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGIL---LNVLSAHYQS 125 (476)
T ss_pred chhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccH---HHHHHhhccc
Confidence 34677777543 38999987654333 333678899999999999999999999999999999987 4578899998
Q ss_pred eEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCC-------CCccceEEec
Q 037288 344 YSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRL-------TTRGAVQSYE 416 (513)
Q Consensus 344 v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~-------~~~~~~~~~~ 416 (513)
|+++. |+.||.+|++|+.||.|.+|++-. ....++..|.
T Consensus 126 ITcL~----------------------------------fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~ 171 (476)
T KOG0646|consen 126 ITCLK----------------------------------FSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFS 171 (476)
T ss_pred eeEEE----------------------------------EeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeec
Confidence 88854 456999999999999999997631 1233888999
Q ss_pred CCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCC-CceEE-eeCCCee
Q 037288 417 GHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQ-RSMGP-QIEGKIH 486 (513)
Q Consensus 417 ~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~-~~~~~-t~~~~~~ 486 (513)
.|.-+|+.+.+.+.+....|+++|.|.++++||+..|.++.++.. ..++.+++..|. ..+++ +.++.+.
T Consensus 172 ~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f-p~si~av~lDpae~~~yiGt~~G~I~ 242 (476)
T KOG0646|consen 172 DHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF-PSSIKAVALDPAERVVYIGTEEGKIF 242 (476)
T ss_pred cCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec-CCcceeEEEcccccEEEecCCcceEE
Confidence 999999997777776667899999999999999999999998776 567999999998 34444 4444444
No 158
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=2.3e-14 Score=145.61 Aligned_cols=191 Identities=17% Similarity=0.183 Sum_probs=153.2
Q ss_pred ccCcEEEEEEcCCCCEEEEEeC-CeEEEEECCCCcEEEE-eeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCcccc
Q 037288 255 FKCTVWTADFCTNPSQAVIGTN-LGAAMVDMETGMASWV-CRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGC 332 (513)
Q Consensus 255 h~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~~~~~~-~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~ 332 (513)
+...|.+++.. +.+|++|++ ++|.+|.+..++.-.+ .+..-++.+++|+.+|++++.|+.|-.|++-++......
T Consensus 55 ~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~- 131 (933)
T KOG1274|consen 55 SGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQE- 131 (933)
T ss_pred cCceeEEEeec--ccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchh-
Confidence 77788888874 447777755 5699999998876533 346778999999999999999999999999999887764
Q ss_pred ccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccce
Q 037288 333 SSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAV 412 (513)
Q Consensus 333 ~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~ 412 (513)
..+.+|..+|.++. ++|++++||+.+-||.|++||+. +....
T Consensus 132 --~~lrgh~apVl~l~----------------------------------~~p~~~fLAvss~dG~v~iw~~~--~~~~~ 173 (933)
T KOG1274|consen 132 --KVLRGHDAPVLQLS----------------------------------YDPKGNFLAVSSCDGKVQIWDLQ--DGILS 173 (933)
T ss_pred --eeecccCCceeeee----------------------------------EcCCCCEEEEEecCceEEEEEcc--cchhh
Confidence 48899999999855 45699999999999999999996 33344
Q ss_pred EEecCC------CCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec--CCCCCeEEEEEcCCCceEEeeCCC
Q 037288 413 QSYEGH------VNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDK--FSNSVPSAVCWRTQRSMGPQIEGK 484 (513)
Q Consensus 413 ~~~~~h------~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~--~~~~~v~~v~~~p~~~~~~t~~~~ 484 (513)
+++.+- ...-.+..++|+|+|..++..+.|+.|++|+..+++....+. .+.+.++.++|+|++.++|++..+
T Consensus 174 ~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~ 253 (933)
T KOG1274|consen 174 KTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLD 253 (933)
T ss_pred hhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccC
Confidence 444321 111224558999998889999999999999999999988874 345559999999999999999887
Q ss_pred ee
Q 037288 485 IH 486 (513)
Q Consensus 485 ~~ 486 (513)
-.
T Consensus 254 g~ 255 (933)
T KOG1274|consen 254 GQ 255 (933)
T ss_pred Cc
Confidence 65
No 159
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.66 E-value=7.1e-15 Score=143.95 Aligned_cols=211 Identities=13% Similarity=0.140 Sum_probs=150.9
Q ss_pred cEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCcccccccc
Q 037288 258 TVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRA 336 (513)
Q Consensus 258 ~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~ 336 (513)
.|+.++|-|||..|+.++++.+.+||...|.....++ |+..|.|++|+.||..+++|+.|..|.+|...-... -
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~-----L 88 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI-----L 88 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccce-----e
Confidence 8999999999999999999999999999998877776 888899999999999999999999999998654432 2
Q ss_pred ccccCcCeEEEeeCC---eEEEeE------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCC
Q 037288 337 GRRHRIPYSRLQRND---RVTNEQ------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLT 407 (513)
Q Consensus 337 ~~~h~~~v~~v~~~~---~~~s~~------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~ 407 (513)
-..|.+.|.|+.|+| .+++++ |........ ..+....+.+ .+|..||++|+.|-.||+|.+-+-.-.
T Consensus 89 kYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~---K~kss~R~~~-CsWtnDGqylalG~~nGTIsiRNk~gE 164 (1081)
T KOG1538|consen 89 KYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVS---KHKSSSRIIC-CSWTNDGQYLALGMFNGTISIRNKNGE 164 (1081)
T ss_pred eeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHH---hhhhheeEEE-eeecCCCcEEEEeccCceEEeecCCCC
Confidence 257999999999999 666766 665443321 1122334444 478889999999999999988753210
Q ss_pred CccceEEecCCCCceeE--------------------------------------------EEEEEcCCCCEEEEEeCCC
Q 037288 408 TRGAVQSYEGHVNSHTR--------------------------------------------IQLGVDQSERFVMSGGEDC 443 (513)
Q Consensus 408 ~~~~~~~~~~h~~~v~~--------------------------------------------~~~~~s~~g~~l~sg~~Dg 443 (513)
....+..--|...+|.. .++.+-++|.+++.||.|+
T Consensus 165 ek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk 244 (1081)
T KOG1538|consen 165 EKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDK 244 (1081)
T ss_pred cceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCC
Confidence 00011111111111111 1233445677788888888
Q ss_pred cEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceE
Q 037288 444 KLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMG 478 (513)
Q Consensus 444 ~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~ 478 (513)
.+.+|- +.|-.+.++...+..|+.|+..|++..+
T Consensus 245 ~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v 278 (1081)
T KOG1538|consen 245 QLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYV 278 (1081)
T ss_pred ceEEEe-ecCeEEeeccccceeEEEEEEccCCceE
Confidence 887775 5677777776677788888888885433
No 160
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=1.7e-14 Score=129.38 Aligned_cols=270 Identities=9% Similarity=0.070 Sum_probs=169.8
Q ss_pred eeeEEeccccCeEEEEEeecccccccceeEEeeeccccccccccccccCCCCCccccCcceeeecccceEEEecCCCCcc
Q 037288 123 TDVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNKTESSKAPEHIWRLNKASILMPSSVSCIKLFGKHPSC 202 (513)
Q Consensus 123 ~~~l~tg~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~s~i~si~~~~~~~~~ 202 (513)
+.-++|++.|+.++||+...+... ..++ .+-+.+.+.+-.+.|-+.
T Consensus 25 GRRmAtCSsDq~vkI~d~~~~s~~----W~~T--------s~Wrah~~Si~rV~WAhP---------------------- 70 (361)
T KOG2445|consen 25 GRRMATCSSDQTVKIWDSTSDSGT----WSCT--------SSWRAHDGSIWRVVWAHP---------------------- 70 (361)
T ss_pred CceeeeccCCCcEEEEeccCCCCc----eEEe--------eeEEecCCcEEEEEecCc----------------------
Confidence 356899999999999997444322 2222 123333444555566221
Q ss_pred ccCCCccc-ceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcC--CCCEEEEE-eCCe
Q 037288 203 ATDGGSVR-HALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCT--NPSQAVIG-TNLG 278 (513)
Q Consensus 203 ~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~--~g~~l~s~-s~~~ 278 (513)
.-. .+..|. .++.+.+|.-........-..|. ...++......|+++.|.| -|-.+|++ +|+.
T Consensus 71 -----EfGqvvA~cS-----~Drtv~iWEE~~~~~~~~~~~Wv---~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~ 137 (361)
T KOG2445|consen 71 -----EFGQVVATCS-----YDRTVSIWEEQEKSEEAHGRRWV---RRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGI 137 (361)
T ss_pred -----cccceEEEEe-----cCCceeeeeecccccccccceeE---EEEEeecCCcceeEEEecchhcceEEEEeccCcE
Confidence 112 222222 25566665542111111111122 2344666778999999999 46677766 5666
Q ss_pred EEEEECCCCc------EEEEee--------eCCCeEEEEEecCC---cEEEEEeCC-----CeEEEEECCCCc-cccccc
Q 037288 279 AAMVDMETGM------ASWVCR--------SKSDILAQQVIHSG---NVVLCGFRN-----GAIVTVDVRKRQ-RGCSSR 335 (513)
Q Consensus 279 i~vwd~~~~~------~~~~~~--------~~~~V~~l~~~~~~---~~l~sg~~d-----g~i~iwd~~~~~-~~~~~~ 335 (513)
++||+.-..- ....++ +.....|+.|+|.. .+|+.|+.+ +.++||...... .-..+.
T Consensus 138 lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva 217 (361)
T KOG2445|consen 138 LRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVA 217 (361)
T ss_pred EEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeeh
Confidence 9999764331 111111 55668999999853 688888766 588999876554 222266
Q ss_pred cccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCC--------
Q 037288 336 AGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLT-------- 407 (513)
Q Consensus 336 ~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~-------- 407 (513)
.+.+|.++|++|+|.| ..-..-++||+++.|| |+||.+...
T Consensus 218 ~L~d~~dpI~di~wAP------------------------------n~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee 266 (361)
T KOG2445|consen 218 ELPDHTDPIRDISWAP------------------------------NIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEE 266 (361)
T ss_pred hcCCCCCcceeeeecc------------------------------ccCCceeeEEEeecCc-EEEEEEeeccchhhhhc
Confidence 8899999999999977 1112346899999999 999998621
Q ss_pred --C--------ccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCC---CCeEEEEecCCCCCeEEEEEcC
Q 037288 408 --T--------RGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIR---SGELVFEDKFSNSVPSAVCWRT 473 (513)
Q Consensus 408 --~--------~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~---~~~~~~~~~~~~~~v~~v~~~p 473 (513)
. -..+..+.+|.+.|.. +.|+-.|..|++.|.||+|++|... ..++...++... .+....|.+
T Consensus 267 ~~~~~~~~~l~v~~vs~~~~H~~~VWr--v~wNmtGtiLsStGdDG~VRLWkany~n~~kC~sv~~~e~-~~~~~~~~~ 342 (361)
T KOG2445|consen 267 VLAPDLMTDLPVEKVSELDDHNGEVWR--VRWNMTGTILSSTGDDGCVRLWKANYNNLWKCTSVLKAEG-SVTKPDFSQ 342 (361)
T ss_pred ccCCCCccccceEEeeeccCCCCceEE--EEEeeeeeEEeecCCCceeeehhhhhhhhheeeeEEeccC-CCCCccccc
Confidence 0 0134567789988866 8888899999999999999999653 345666665533 244444443
No 161
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.65 E-value=7.1e-15 Score=135.88 Aligned_cols=194 Identities=13% Similarity=0.090 Sum_probs=144.9
Q ss_pred EeccccCcEEEEEEcC-CCCEEEEEeCCe-EEEEECCCCc--------EEEEeeeCCCeEEEEEecCC-cEEEEEeCCCe
Q 037288 251 LVASFKCTVWTADFCT-NPSQAVIGTNLG-AAMVDMETGM--------ASWVCRSKSDILAQQVIHSG-NVVLCGFRNGA 319 (513)
Q Consensus 251 ~~~~h~~~V~~~~~s~-~g~~l~s~s~~~-i~vwd~~~~~--------~~~~~~~~~~V~~l~~~~~~-~~l~sg~~dg~ 319 (513)
...||+.+|..++|+| +...||+|++++ |.||++-.+- ...+..|...|--++|+|.. ++|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 3789999999999999 566888999876 9999986542 34445588889999999976 89999999999
Q ss_pred EEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeE
Q 037288 320 IVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTV 399 (513)
Q Consensus 320 i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i 399 (513)
|.+||+.+++... ++. |.+.|.++ .|+.+|.+|++.+.|..|
T Consensus 156 v~iWnv~tgeali---~l~-hpd~i~S~----------------------------------sfn~dGs~l~TtckDKkv 197 (472)
T KOG0303|consen 156 VSIWNVGTGEALI---TLD-HPDMVYSM----------------------------------SFNRDGSLLCTTCKDKKV 197 (472)
T ss_pred EEEEeccCCceee---ecC-CCCeEEEE----------------------------------EeccCCceeeeeccccee
Confidence 9999999987533 344 66666664 556699999999999999
Q ss_pred EEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEe---CCCcEEEEeCCCCe---EEEEecCCCCCeEEEEEcC
Q 037288 400 KLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGG---EDCKLRIWSIRSGE---LVFEDKFSNSVPSAVCWRT 473 (513)
Q Consensus 400 ~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~---~Dg~v~vwd~~~~~---~~~~~~~~~~~v~~v~~~p 473 (513)
+|||.| ....+..-.+|.+.- ..++.|-.+|.++.+|- .+..+-+||..+-+ .+.++.. .+.|.---|.|
T Consensus 198 Rv~dpr--~~~~v~e~~~heG~k-~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~ 273 (472)
T KOG0303|consen 198 RVIDPR--RGTVVSEGVAHEGAK-PARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDP 273 (472)
T ss_pred EEEcCC--CCcEeeecccccCCC-cceeEEeccCceeeeccccccccceeccCcccccCcceeEEecc-CCceEEeeecC
Confidence 999998 555777667787653 33466778888554443 37789999876533 3334444 34466667788
Q ss_pred C-CceEEeeCCCee
Q 037288 474 Q-RSMGPQIEGKIH 486 (513)
Q Consensus 474 ~-~~~~~t~~~~~~ 486 (513)
+ ..+++.+-+|-.
T Consensus 274 dt~ivYl~GKGD~~ 287 (472)
T KOG0303|consen 274 DTSIVYLCGKGDSS 287 (472)
T ss_pred CCCEEEEEecCCcc
Confidence 8 666666666654
No 162
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=3.2e-14 Score=131.27 Aligned_cols=234 Identities=14% Similarity=0.112 Sum_probs=163.8
Q ss_pred EEeccccCcEEEEEEcCCCCEEEEEeCCe-EEEEECCC------CcEEEEee--eCCCeEEEEEecCCcEEEEEeCCCeE
Q 037288 250 HLVASFKCTVWTADFCTNPSQAVIGTNLG-AAMVDMET------GMASWVCR--SKSDILAQQVIHSGNVVLCGFRNGAI 320 (513)
Q Consensus 250 ~~~~~h~~~V~~~~~s~~g~~l~s~s~~~-i~vwd~~~------~~~~~~~~--~~~~V~~l~~~~~~~~l~sg~~dg~i 320 (513)
..+.+|.+.|+++.|+.++++|++|+|+. +++|+++. .+++.+.. |.+.|+|++|+.....|++|+.+++|
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 34789999999999999999999998876 99998753 34555555 55789999999888999999999999
Q ss_pred EEEECCCCccccccccccccCcCeEEEeeCC---eEEEeE-------eecccCccc--ceeEeecCCCceEEEEEcCCCC
Q 037288 321 VTVDVRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIW--PSHTTFMPSSISCLQSLQLYDQ 388 (513)
Q Consensus 321 ~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~ 388 (513)
...|+.+.+.+. +..-....+.|..++.+| .+++.+ |+.+..... +......+....++.+.+....
T Consensus 130 I~HDiEt~qsi~-V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~ 208 (609)
T KOG4227|consen 130 IKHDIETKQSIY-VANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPA 208 (609)
T ss_pred Eeeecccceeee-eecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCce
Confidence 999999887654 334444567999999999 333333 998876522 2222222444445433334466
Q ss_pred EEEEEecCCeEEEEecCCCCcc------------------------------------------------ceEEecCCC-
Q 037288 389 YFLASSMDGTVKLYDHRLTTRG------------------------------------------------AVQSYEGHV- 419 (513)
Q Consensus 389 ~l~s~s~dg~i~lwd~~~~~~~------------------------------------------------~~~~~~~h~- 419 (513)
+|++++..+-+-+||.|+.... ++..+. |.
T Consensus 209 Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D-~N~ 287 (609)
T KOG4227|consen 209 LILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD-HNP 287 (609)
T ss_pred eEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEecc-CCC
Confidence 7888888999999999863110 011111 11
Q ss_pred ----CceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-----C------------------eEEEEecCCCCCeEEEEEc
Q 037288 420 ----NSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRS-----G------------------ELVFEDKFSNSVPSAVCWR 472 (513)
Q Consensus 420 ----~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~-----~------------------~~~~~~~~~~~~v~~v~~~ 472 (513)
+..+..+++|- +..-+++|+.+-.|++|.+.. | +.+..+++|.+.++.|.|+
T Consensus 288 ~GY~N~~T~KS~~F~-~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~ 366 (609)
T KOG4227|consen 288 NGYCNIKTIKSMTFI-DDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFS 366 (609)
T ss_pred Ccceeeeeeeeeeee-cceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeec
Confidence 11111223443 234489999999999998742 1 1344578999999999999
Q ss_pred CCCceEEeeCCCee
Q 037288 473 TQRSMGPQIEGKIH 486 (513)
Q Consensus 473 p~~~~~~t~~~~~~ 486 (513)
|...++++++-...
T Consensus 367 ~H~~~l~SSGVE~~ 380 (609)
T KOG4227|consen 367 QHNNLLVSSGVENS 380 (609)
T ss_pred CCcceEeccchhhh
Confidence 99999988876543
No 163
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=2.9e-15 Score=155.60 Aligned_cols=194 Identities=13% Similarity=0.129 Sum_probs=144.7
Q ss_pred CcEEEEEEcCCCCE----EEEEeC-CeEEEEECCC---CcE---EE-EeeeCCCeEEEEEecCC-cEEEEEeCCCeEEEE
Q 037288 257 CTVWTADFCTNPSQ----AVIGTN-LGAAMVDMET---GMA---SW-VCRSKSDILAQQVIHSG-NVVLCGFRNGAIVTV 323 (513)
Q Consensus 257 ~~V~~~~~s~~g~~----l~s~s~-~~i~vwd~~~---~~~---~~-~~~~~~~V~~l~~~~~~-~~l~sg~~dg~i~iw 323 (513)
..-+.++|.+.|.. ||.|.+ |+|.+||... +.. +. .-.|++.|..++|++.. ++||+|+.||.|.||
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW 144 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence 57789999987765 776655 4599999765 221 22 22389999999999965 699999999999999
Q ss_pred ECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEe
Q 037288 324 DVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYD 403 (513)
Q Consensus 324 d~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd 403 (513)
|+...+.-. .+. .....+.|.++.|.....+.|++++.+|.+.|||
T Consensus 145 Dlnn~~tP~---~~~-------------------------------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWD 190 (1049)
T KOG0307|consen 145 DLNKPETPF---TPG-------------------------------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWD 190 (1049)
T ss_pred ccCCcCCCC---CCC-------------------------------CCCCcccceEeccchhhhHHhhccCCCCCceecc
Confidence 999865422 110 0112233444444445577899999999999999
Q ss_pred cCCCCccceEEecCCCCceeEEEEEEcCCC-CEEEEEeCCC---cEEEEeCCCC-eEEEEecCCCCCeEEEEEcCC-Cce
Q 037288 404 HRLTTRGAVQSYEGHVNSHTRIQLGVDQSE-RFVMSGGEDC---KLRIWSIRSG-ELVFEDKFSNSVPSAVCWRTQ-RSM 477 (513)
Q Consensus 404 ~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g-~~l~sg~~Dg---~v~vwd~~~~-~~~~~~~~~~~~v~~v~~~p~-~~~ 477 (513)
+| ..+++..+..|.+...+-.+.|+|+. ..|++++.|. .|.+||++.. .+++++.+|...|.++.|++. ..+
T Consensus 191 lr--~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~l 268 (1049)
T KOG0307|consen 191 LR--KKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRL 268 (1049)
T ss_pred cc--CCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchh
Confidence 99 66677778777775555569999986 3455555543 6999999874 577888899999999999998 599
Q ss_pred EEeeCCCee
Q 037288 478 GPQIEGKIH 486 (513)
Q Consensus 478 ~~t~~~~~~ 486 (513)
++|++.|..
T Consensus 269 llSsgkD~~ 277 (1049)
T KOG0307|consen 269 LLSSGKDNR 277 (1049)
T ss_pred hhcccCCCC
Confidence 999999977
No 164
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=3.2e-14 Score=146.12 Aligned_cols=189 Identities=20% Similarity=0.216 Sum_probs=130.9
Q ss_pred EEEEEcCC-CCEEEEEeCCeEEEEECCCCcEEEEee--eCCCeEEEEEec-CCcEEEEEeCCCeEEEEECCCCccccccc
Q 037288 260 WTADFCTN-PSQAVIGTNLGAAMVDMETGMASWVCR--SKSDILAQQVIH-SGNVVLCGFRNGAIVTVDVRKRQRGCSSR 335 (513)
Q Consensus 260 ~~~~~s~~-g~~l~s~s~~~i~vwd~~~~~~~~~~~--~~~~V~~l~~~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~ 335 (513)
.-++|... |.++++|.-..|+|||.+......-+. ....|+++.-+. .|++|++|..||.|++||.|.......+.
T Consensus 1169 ~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~ 1248 (1387)
T KOG1517|consen 1169 LVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVC 1248 (1387)
T ss_pred eeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccce
Confidence 34566664 445555544559999999887666554 344477776553 46999999999999999999876543244
Q ss_pred cccccCcC--eEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCC-EEEEEecCCeEEEEecCCCCccce
Q 037288 336 AGRRHRIP--YSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQ-YFLASSMDGTVKLYDHRLTTRGAV 412 (513)
Q Consensus 336 ~~~~h~~~--v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~s~dg~i~lwd~~~~~~~~~ 412 (513)
....|... |..+ .+.++|- .|++|+.||.|++||+|+......
T Consensus 1249 ~~R~h~~~~~Iv~~----------------------------------slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~ 1294 (1387)
T KOG1517|consen 1249 VYREHNDVEPIVHL----------------------------------SLQRQGLGELVSGSQDGDIQLLDLRMSSKETF 1294 (1387)
T ss_pred eecccCCcccceeE----------------------------------EeecCCCcceeeeccCCeEEEEecccCccccc
Confidence 55566554 4443 3344443 499999999999999996433333
Q ss_pred EEecCCC--C-ceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecC-------CCCCeEEEEEcCCCceEEeeC
Q 037288 413 QSYEGHV--N-SHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKF-------SNSVPSAVCWRTQRSMGPQIE 482 (513)
Q Consensus 413 ~~~~~h~--~-~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~-------~~~~v~~v~~~p~~~~~~t~~ 482 (513)
.++..|- + ..++ +.++++...+|+|+. +.|+||++.. +++..++. ..+.+.+++|||...++|.+.
T Consensus 1295 ~~iv~~~~yGs~lTa--l~VH~hapiiAsGs~-q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~ 1370 (1387)
T KOG1517|consen 1295 LTIVAHWEYGSALTA--LTVHEHAPIIASGSA-QLIKIYSLSG-EQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGS 1370 (1387)
T ss_pred ceeeeccccCcccee--eeeccCCCeeeecCc-ceEEEEecCh-hhhcccccCcccccCcCCCcceeeecchhHhhhhcc
Confidence 3344443 3 2555 888999999999998 9999999754 44444332 245689999999988888776
Q ss_pred CCee
Q 037288 483 GKIH 486 (513)
Q Consensus 483 ~~~~ 486 (513)
.|..
T Consensus 1371 ~Ds~ 1374 (1387)
T KOG1517|consen 1371 ADST 1374 (1387)
T ss_pred CCce
Confidence 6643
No 165
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.61 E-value=3.6e-13 Score=132.96 Aligned_cols=218 Identities=10% Similarity=0.076 Sum_probs=152.6
Q ss_pred eccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEE-EEe----eeCCCeEEEEEecCCcEEEEEeCCCeEEEEEC
Q 037288 252 VASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMAS-WVC----RSKSDILAQQVIHSGNVVLCGFRNGAIVTVDV 325 (513)
Q Consensus 252 ~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~-~~~----~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~ 325 (513)
+.||.+.|.+++|+|.|.+|.+.+ |.+-|++---..+.. ..+ -|.-+++|++|-+....+++|.....+++|+.
T Consensus 357 iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~a 436 (764)
T KOG1063|consen 357 ISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEA 436 (764)
T ss_pred cccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecC
Confidence 789999999999999999888665 556888755422211 111 16778999999876667888888888888875
Q ss_pred C-------------------------------------------CCcc------------------------------cc
Q 037288 326 R-------------------------------------------KRQR------------------------------GC 332 (513)
Q Consensus 326 ~-------------------------------------------~~~~------------------------------~~ 332 (513)
. ++.. -+
T Consensus 437 Pk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwP 516 (764)
T KOG1063|consen 437 PKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWP 516 (764)
T ss_pred cHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccch
Confidence 2 0000 00
Q ss_pred ccccccccCcCeEEEeeCC--eEEEeE-------------eecccCcccceeEee-cCCCceEEEEEcCCCCEEEEEecC
Q 037288 333 SSRAGRRHRIPYSRLQRND--RVTNEQ-------------WFELKANIWPSHTTF-MPSSISCLQSLQLYDQYFLASSMD 396 (513)
Q Consensus 333 ~~~~~~~h~~~v~~v~~~~--~~~s~~-------------w~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~s~d 396 (513)
.+..+.||...|.+++.+| .+++.+ |.... ......+. |.=.|+. ..|+|+|++|++.+.|
T Consensus 517 Ev~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~--W~~~~~L~~HsLTVT~-l~FSpdg~~LLsvsRD 593 (764)
T KOG1063|consen 517 EVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTAN--WLQVQELEGHSLTVTR-LAFSPDGRYLLSVSRD 593 (764)
T ss_pred hhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccc--hhhhheecccceEEEE-EEECCCCcEEEEeecC
Confidence 2456788999999999998 444433 33222 22222233 3334455 5899999999999999
Q ss_pred CeEEEEecCCCCcc--ceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC--eEEEE--ecCCCCCeEEEE
Q 037288 397 GTVKLYDHRLTTRG--AVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSG--ELVFE--DKFSNSVPSAVC 470 (513)
Q Consensus 397 g~i~lwd~~~~~~~--~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~--~~~~~--~~~~~~~v~~v~ 470 (513)
.++.+|........ .....+.|..-|. +++|+|++.+++++|.|.+|+||..... +.+.. ...++.+|++++
T Consensus 594 Rt~sl~~~~~~~~~e~~fa~~k~HtRIIW--dcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~ 671 (764)
T KOG1063|consen 594 RTVSLYEVQEDIKDEFRFACLKAHTRIIW--DCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVA 671 (764)
T ss_pred ceEEeeeeecccchhhhhccccccceEEE--EcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEE
Confidence 99999987421111 2334677887664 4999999999999999999999999887 44433 234577899999
Q ss_pred EcCC
Q 037288 471 WRTQ 474 (513)
Q Consensus 471 ~~p~ 474 (513)
|.|-
T Consensus 672 ~~~~ 675 (764)
T KOG1063|consen 672 YLPV 675 (764)
T ss_pred eecc
Confidence 9886
No 166
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.61 E-value=4.3e-14 Score=125.84 Aligned_cols=199 Identities=12% Similarity=0.076 Sum_probs=146.4
Q ss_pred ccccCcEEEEEEcCCCC----EEEEEeCCeEEEEECCCC--cE--EEE------eeeCCCeEEEEEec-CCcEEEEEeCC
Q 037288 253 ASFKCTVWTADFCTNPS----QAVIGTNLGAAMVDMETG--MA--SWV------CRSKSDILAQQVIH-SGNVVLCGFRN 317 (513)
Q Consensus 253 ~~h~~~V~~~~~s~~g~----~l~s~s~~~i~vwd~~~~--~~--~~~------~~~~~~V~~l~~~~-~~~~l~sg~~d 317 (513)
..|..+++.+.|.|+.. -+.+.+++.+++|.+... +. ... .++..++++.+|+. +-++|.+.+-|
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiD 172 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSID 172 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeeccc
Confidence 56888999999999763 233445568999988742 21 111 12556799999997 56899999999
Q ss_pred CeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCC
Q 037288 318 GAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDG 397 (513)
Q Consensus 318 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg 397 (513)
.++.|||+..+.....-..+.+|..+|..|+|.. ..-+.||+.+.||
T Consensus 173 TTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~---------------------------------~s~~~FASvgaDG 219 (364)
T KOG0290|consen 173 TTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLK---------------------------------GSRDVFASVGADG 219 (364)
T ss_pred CeEEEEEEeeccccceeeEEEecCcceeEEEecc---------------------------------CccceEEEecCCC
Confidence 9999999998733221225778888888877721 2356899999999
Q ss_pred eEEEEecCCCCcc-ceEEecCCCCceeEEEEEEcCC-CCEEEEEeCC-CcEEEEeCCCC-eEEEEecCCCCCeEEEEEcC
Q 037288 398 TVKLYDHRLTTRG-AVQSYEGHVNSHTRIQLGVDQS-ERFVMSGGED-CKLRIWSIRSG-ELVFEDKFSNSVPSAVCWRT 473 (513)
Q Consensus 398 ~i~lwd~~~~~~~-~~~~~~~h~~~v~~~~~~~s~~-g~~l~sg~~D-g~v~vwd~~~~-~~~~~~~~~~~~v~~v~~~p 473 (513)
.|++||+| ... ..-.|+.....-.-++++|++. -+++++-..| ..|.|-|++.. .++..+..|.+.|++++|.|
T Consensus 220 SvRmFDLR--~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaP 297 (364)
T KOG0290|consen 220 SVRMFDLR--SLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAP 297 (364)
T ss_pred cEEEEEec--ccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecC
Confidence 99999999 444 3444554443334577888875 4677775554 46999999974 57888999999999999999
Q ss_pred C-CceEEeeCCCee
Q 037288 474 Q-RSMGPQIEGKIH 486 (513)
Q Consensus 474 ~-~~~~~t~~~~~~ 486 (513)
. ...++|++.|..
T Consensus 298 hS~~hictaGDD~q 311 (364)
T KOG0290|consen 298 HSSSHICTAGDDCQ 311 (364)
T ss_pred CCCceeeecCCcce
Confidence 9 677888887766
No 167
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.59 E-value=4.8e-14 Score=133.88 Aligned_cols=217 Identities=14% Similarity=0.118 Sum_probs=151.3
Q ss_pred cEEEEEEcCCCCEEEE--EeCCeEEEEECCC--CcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCcccc
Q 037288 258 TVWTADFCTNPSQAVI--GTNLGAAMVDMET--GMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGC 332 (513)
Q Consensus 258 ~V~~~~~s~~g~~l~s--~s~~~i~vwd~~~--~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~ 332 (513)
.+..+.|+....+++. ++|..|++|.-.. ++...+-. ....-+|++......++++|+..+.|+|||++....
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~-- 113 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLI-- 113 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHH--
Confidence 4889999876654332 2344578885432 22222211 222345665555668999999999999999995543
Q ss_pred ccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeEeecC-CCceEEEEEcCCCC-EEEEEecCCeEE
Q 037288 333 SSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTFMP-SSISCLQSLQLYDQ-YFLASSMDGTVK 400 (513)
Q Consensus 333 ~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~-~l~s~s~dg~i~ 400 (513)
.+.+.+|...|+++.++. .+++++ .....+. ...++.++ +....++.+++..+ +|.+++.+|.|.
T Consensus 114 -hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~--~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vt 190 (673)
T KOG4378|consen 114 -HRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQ--KTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVT 190 (673)
T ss_pred -hhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCc--cccceecCCCCeEEEeecccccceeeEeeccCCeEE
Confidence 568999999999999987 566555 1111111 23345554 44455667777765 455789999999
Q ss_pred EEecCCCCccceEEe-cCCCCceeEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceE
Q 037288 401 LYDHRLTTRGAVQSY-EGHVNSHTRIQLGVDQS-ERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMG 478 (513)
Q Consensus 401 lwd~~~~~~~~~~~~-~~h~~~v~~~~~~~s~~-g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~ 478 (513)
+||.. ...++..+ +.|..+... ++|+|. +.+|++.|.|..|.+||.+.......+.. +.|.+.|+|.+++.+|
T Consensus 191 lwDv~--g~sp~~~~~~~HsAP~~g--icfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y-~~Plstvaf~~~G~~L 265 (673)
T KOG4378|consen 191 LWDVQ--GMSPIFHASEAHSAPCRG--ICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY-SHPLSTVAFSECGTYL 265 (673)
T ss_pred EEecc--CCCcccchhhhccCCcCc--ceecCCccceEEEecccceEEEeecccccccceeee-cCCcceeeecCCceEE
Confidence 99985 33355444 678887666 888885 56789999999999999998887777765 6789999999998777
Q ss_pred EeeCCC
Q 037288 479 PQIEGK 484 (513)
Q Consensus 479 ~t~~~~ 484 (513)
+.+...
T Consensus 266 ~aG~s~ 271 (673)
T KOG4378|consen 266 CAGNSK 271 (673)
T ss_pred EeecCC
Confidence 665544
No 168
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=1.7e-13 Score=119.14 Aligned_cols=213 Identities=18% Similarity=0.139 Sum_probs=144.3
Q ss_pred CCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeCCeEEEEECCCCc------EEEEee-
Q 037288 222 TGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMETGM------ASWVCR- 294 (513)
Q Consensus 222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~------~~~~~~- 294 (513)
..|.+.++++.+..+-.. .+-. +..+...++|..+|+.++|+ ..+|.+|+|+.|+-|.-.... .++...
T Consensus 30 ~~G~iav~sl~sl~s~sa-~~~g-k~~iv~eqahdgpiy~~~f~--d~~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~ 105 (325)
T KOG0649|consen 30 LFGDIAVLSLKSLDSGSA-EPPG-KLKIVPEQAHDGPIYYLAFH--DDFLLSGGDGLVYGWEWNEEEESLATKRLWEVKI 105 (325)
T ss_pred CCCeEEEEEehhhhcccc-CCCC-CcceeeccccCCCeeeeeee--hhheeeccCceEEEeeehhhhhhccchhhhhhcC
Confidence 456666666554433211 1111 22466679999999999998 568889999889887544321 111111
Q ss_pred --eC-----CCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccc
Q 037288 295 --SK-----SDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWP 367 (513)
Q Consensus 295 --~~-----~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~ 367 (513)
+. -+|.++...|..+-|+.++.|+.++.||+.+++... .+.+|++.|.++.-
T Consensus 106 P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r---~~rGHtDYvH~vv~------------------ 164 (325)
T KOG0649|consen 106 PMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQR---EYRGHTDYVHSVVG------------------ 164 (325)
T ss_pred ccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEE---EEcCCcceeeeeee------------------
Confidence 22 348999999988766677799999999999998744 89999998887432
Q ss_pred eeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCc--e----eEEEEEEcCCCCEEEEEeC
Q 037288 368 SHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNS--H----TRIQLGVDQSERFVMSGGE 441 (513)
Q Consensus 368 ~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~--v----~~~~~~~s~~g~~l~sg~~ 441 (513)
......+++|+.||++++||++ +.+.++++....++ . ..+-.+..-++.||++|+
T Consensus 165 ----------------R~~~~qilsG~EDGtvRvWd~k--t~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGg- 225 (325)
T KOG0649|consen 165 ----------------RNANGQILSGAEDGTVRVWDTK--TQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGG- 225 (325)
T ss_pred ----------------cccCcceeecCCCccEEEEecc--ccceeEEeccccChhhcCcccCceeEEEeccCceEEecC-
Confidence 2234568999999999999998 45566655422211 0 011134455688998877
Q ss_pred CCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEE
Q 037288 442 DCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGP 479 (513)
Q Consensus 442 Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~ 479 (513)
.-.+.+|++++.++...+.. ..++..+.|-.+-.+.+
T Consensus 226 Gp~lslwhLrsse~t~vfpi-pa~v~~v~F~~d~vl~~ 262 (325)
T KOG0649|consen 226 GPKLSLWHLRSSESTCVFPI-PARVHLVDFVDDCVLIG 262 (325)
T ss_pred CCceeEEeccCCCceEEEec-ccceeEeeeecceEEEe
Confidence 45699999999998888765 45688888887644333
No 169
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.59 E-value=1e-13 Score=128.36 Aligned_cols=155 Identities=14% Similarity=0.173 Sum_probs=122.4
Q ss_pred eeeCCCeEEEEEec-CCcEEEEEeCCCeEEEEECCCCcccc----ccccccccCcCeEEEeeCCeEEEeEeecccCcccc
Q 037288 293 CRSKSDILAQQVIH-SGNVVLCGFRNGAIVTVDVRKRQRGC----SSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWP 367 (513)
Q Consensus 293 ~~~~~~V~~l~~~~-~~~~l~sg~~dg~i~iwd~~~~~~~~----~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~ 367 (513)
..|.++|..++|+| +.+.||+|+.|.+|.||++-.+.... .+..|.+|...|--++|+|
T Consensus 78 ~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHP---------------- 141 (472)
T KOG0303|consen 78 CGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHP---------------- 141 (472)
T ss_pred cCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecc----------------
Confidence 35899999999999 45899999999999999987654322 1446777877777776655
Q ss_pred eeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEE
Q 037288 368 SHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRI 447 (513)
Q Consensus 368 ~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~v 447 (513)
.-.+.|++++.|..|.+||+. ....+.++. |.+.|+. ++|+-||.+|++.+.|..|+|
T Consensus 142 -----------------tA~NVLlsag~Dn~v~iWnv~--tgeali~l~-hpd~i~S--~sfn~dGs~l~TtckDKkvRv 199 (472)
T KOG0303|consen 142 -----------------TAPNVLLSAGSDNTVSIWNVG--TGEALITLD-HPDMVYS--MSFNRDGSLLCTTCKDKKVRV 199 (472)
T ss_pred -----------------cchhhHhhccCCceEEEEecc--CCceeeecC-CCCeEEE--EEeccCCceeeeecccceeEE
Confidence 235788999999999999997 444666677 9988766 899999999999999999999
Q ss_pred EeCCCCeEEEEecCCCC-CeEEEEEcCCCceEEeeCCCe
Q 037288 448 WSIRSGELVFEDKFSNS-VPSAVCWRTQRSMGPQIEGKI 485 (513)
Q Consensus 448 wd~~~~~~~~~~~~~~~-~v~~v~~~p~~~~~~t~~~~~ 485 (513)
||.++++++.+-..|.+ ....+.|-.++.++.|.-...
T Consensus 200 ~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~ 238 (472)
T KOG0303|consen 200 IDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRM 238 (472)
T ss_pred EcCCCCcEeeecccccCCCcceeEEeccCceeeeccccc
Confidence 99999999999866654 355566777766666554443
No 170
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.59 E-value=3.9e-15 Score=149.21 Aligned_cols=226 Identities=15% Similarity=0.145 Sum_probs=162.1
Q ss_pred eEEeccccCcEEEEEEcCCCCEEEEEeCCe-EEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECC
Q 037288 249 MHLVASFKCTVWTADFCTNPSQAVIGTNLG-AAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVR 326 (513)
Q Consensus 249 ~~~~~~h~~~V~~~~~s~~g~~l~s~s~~~-i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~ 326 (513)
+..+.+|.++|+|+.|...|.++++|+|+. ++||..+++.+..... |.+.|+.++.+....++++++.|..|++|.+.
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~ 262 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP 262 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecC
Confidence 445889999999999999999999999988 8999999999887776 77889999999888999999999999999999
Q ss_pred CCccccccccccccCcCeEEEeeCCeEEEe------Eeecc-cCcccceeEee-cCCCceEEEEEcCCC-----------
Q 037288 327 KRQRGCSSRAGRRHRIPYSRLQRNDRVTNE------QWFEL-KANIWPSHTTF-MPSSISCLQSLQLYD----------- 387 (513)
Q Consensus 327 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~------~w~~~-~~~~~~~~~~~-~~~~v~~~~~~~~~~----------- 387 (513)
.+.. +..+.+|++.|++++|+|.-.++ -||.+ .....+-.... ......+...+..++
T Consensus 263 ~~~p---vsvLrghtgavtaiafsP~~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~e 339 (1113)
T KOG0644|consen 263 DGAP---VSVLRGHTGAVTAIAFSPRASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGE 339 (1113)
T ss_pred CCch---HHHHhccccceeeeccCccccCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcc
Confidence 8876 55999999999999999922111 17766 21111100000 000111111111122
Q ss_pred --------------------------CEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCC-CEEEEEe
Q 037288 388 --------------------------QYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSE-RFVMSGG 440 (513)
Q Consensus 388 --------------------------~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g-~~l~sg~ 440 (513)
.+.+++-.+..+++|++. ....++.+.+|...+.. +.++|-+ ...++++
T Consensus 340 a~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~--~g~l~H~l~ghsd~~yv--Ld~Hpfn~ri~msag 415 (1113)
T KOG0644|consen 340 ARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLY--TGQLLHNLMGHSDEVYV--LDVHPFNPRIAMSAG 415 (1113)
T ss_pred cccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecc--cchhhhhhcccccceee--eeecCCCcHhhhhcc
Confidence 223333344556667764 34466677788888877 8888855 5567999
Q ss_pred CCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEee
Q 037288 441 EDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQI 481 (513)
Q Consensus 441 ~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~ 481 (513)
.||...|||+-.|.+++.+....+.+...+|++++..++-+
T Consensus 416 ~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~ls 456 (1113)
T KOG0644|consen 416 YDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALS 456 (1113)
T ss_pred CCCceEeeecccCCcceeeecccceeeccccCCCCceEecC
Confidence 99999999999998888765445557778888886544433
No 171
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.57 E-value=1.3e-13 Score=124.66 Aligned_cols=178 Identities=12% Similarity=0.077 Sum_probs=133.5
Q ss_pred cEEEEEEcCCCCEEEEEeCCeEEEEEC-CCCcE---EEEee-----eCCCeEEEEEecCC-cEEEEEeCCCeEEEEECCC
Q 037288 258 TVWTADFCTNPSQAVIGTNLGAAMVDM-ETGMA---SWVCR-----SKSDILAQQVIHSG-NVVLCGFRNGAIVTVDVRK 327 (513)
Q Consensus 258 ~V~~~~~s~~g~~l~s~s~~~i~vwd~-~~~~~---~~~~~-----~~~~V~~l~~~~~~-~~l~sg~~dg~i~iwd~~~ 327 (513)
+..+++|+|||.+|.+|-...|+++|+ +.|+- ..++. ..+-+.|++|+|-. ..+++|+....+-||.-..
T Consensus 160 aAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~ 239 (406)
T KOG2919|consen 160 AAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG 239 (406)
T ss_pred hheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCC
Confidence 567899999999999999999999999 55541 11111 24558999999955 6999999999998888777
Q ss_pred CccccccccccccCcCeEEEeeCC---eEEEeE--------eecccCcccceeEeecCC--CceEEEEEcCCCCEEEEEe
Q 037288 328 RQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ--------WFELKANIWPSHTTFMPS--SISCLQSLQLYDQYFLASS 394 (513)
Q Consensus 328 ~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~--------w~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~s~s 394 (513)
+.+ +..+-+|.+.|+.+.|.+ .+++|. ||++.........-.+-. ...-..-+.|.++.|++|+
T Consensus 240 ~~p---l~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~ 316 (406)
T KOG2919|consen 240 RRP---LQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGD 316 (406)
T ss_pred CCc---eeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccC
Confidence 765 558889999999999999 888887 999876533222222211 1111234678999999999
Q ss_pred cCCeEEEEecCCCCcc-ceEEecCCCCceeEEEEEEcCCCCEEEEEeCC
Q 037288 395 MDGTVKLYDHRLTTRG-AVQSYEGHVNSHTRIQLGVDQSERFVMSGGED 442 (513)
Q Consensus 395 ~dg~i~lwd~~~~~~~-~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~D 442 (513)
.||.|++||+. ..+ .+..+..|...+.. ++++|--.++++++..
T Consensus 317 tdG~V~vwdlk--~~gn~~sv~~~~sd~vNg--vslnP~mpilatssGq 361 (406)
T KOG2919|consen 317 TDGSVRVWDLK--DLGNEVSVTGNYSDTVNG--VSLNPIMPILATSSGQ 361 (406)
T ss_pred CCccEEEEecC--CCCCcccccccccccccc--eecCcccceeeeccCc
Confidence 99999999996 423 56777778877777 7888887777776653
No 172
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.56 E-value=4.5e-14 Score=124.16 Aligned_cols=228 Identities=13% Similarity=0.091 Sum_probs=152.6
Q ss_pred eEEeccccCcEEEEEEcCCCCEEEEE-eCCeEEEEECCCCcEEEEee--eCCCeEEEEEecCCcEEEEEeCCCeEEEEEC
Q 037288 249 MHLVASFKCTVWTADFCTNPSQAVIG-TNLGAAMVDMETGMASWVCR--SKSDILAQQVIHSGNVVLCGFRNGAIVTVDV 325 (513)
Q Consensus 249 ~~~~~~h~~~V~~~~~s~~g~~l~s~-s~~~i~vwd~~~~~~~~~~~--~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~ 325 (513)
.+.+++|...|+++.|..+++++ +| .-+-|++|++.+.+....++ +...|+.++--|+ ..+.+-++|+.+.+|++
T Consensus 7 ~fvLRp~~~~v~s~~fqa~~rL~-sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~i 84 (323)
T KOG0322|consen 7 FFVLRPHSSSVTSVLFQANERLM-SGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTI 84 (323)
T ss_pred eeEeccccchheehhhccchhhh-cccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEc
Confidence 56788999999999998888744 55 44559999999998776666 4556999998887 45677789999999999
Q ss_pred CCCccccccccccccCcCeEEEeeCC-eEEEeE----e----ecccCcc---------c-----ceeEeecCCCceEEEE
Q 037288 326 RKRQRGCSSRAGRRHRIPYSRLQRND-RVTNEQ----W----FELKANI---------W-----PSHTTFMPSSISCLQS 382 (513)
Q Consensus 326 ~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~s~~----w----~~~~~~~---------~-----~~~~~~~~~~v~~~~~ 382 (513)
..... ...|.-.+.++.|.+ .++... | +-+.... . +.......+.+.|..+
T Consensus 85 a~s~~------i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~ 158 (323)
T KOG0322|consen 85 AYSAF------ISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDK 158 (323)
T ss_pred cCcce------EEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeec
Confidence 87543 335566677777777 333332 1 1111000 0 0001111234444432
Q ss_pred EcCCCC--EEEEEecCCeEEEEecCCCCc--------cceEEecCCCCc-------------------------------
Q 037288 383 LQLYDQ--YFLASSMDGTVKLYDHRLTTR--------GAVQSYEGHVNS------------------------------- 421 (513)
Q Consensus 383 ~~~~~~--~l~s~s~dg~i~lwd~~~~~~--------~~~~~~~~h~~~------------------------------- 421 (513)
-...+. ++++|-.+|.|.+||+...+. ..+..+..|..+
T Consensus 159 ~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~ 238 (323)
T KOG0322|consen 159 DHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHST 238 (323)
T ss_pred cccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeecccc
Confidence 222333 455777899999999974200 001011111111
Q ss_pred ---------------eeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288 422 ---------------HTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIH 486 (513)
Q Consensus 422 ---------------v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~ 486 (513)
+.. +.+-||++.++++|.|+.||||+.++..++..++.|.+.|++++|+|+..++|..+.|-.
T Consensus 239 gslq~~~e~~lknpGv~g--vrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~r 316 (323)
T KOG0322|consen 239 GSLQIRKEITLKNPGVSG--VRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDAR 316 (323)
T ss_pred CcccccceEEecCCCccc--eEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCce
Confidence 122 445689999999999999999999999999999999999999999999777777666643
No 173
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.56 E-value=1.7e-13 Score=124.11 Aligned_cols=161 Identities=17% Similarity=0.198 Sum_probs=128.0
Q ss_pred eccccCcEEEEEEcC-----CCCEEEEEeCCeEEEEECCCCcEEEEe---e---eCCCeEEEEEecCC----cEEEEEeC
Q 037288 252 VASFKCTVWTADFCT-----NPSQAVIGTNLGAAMVDMETGMASWVC---R---SKSDILAQQVIHSG----NVVLCGFR 316 (513)
Q Consensus 252 ~~~h~~~V~~~~~s~-----~g~~l~s~s~~~i~vwd~~~~~~~~~~---~---~~~~V~~l~~~~~~----~~l~sg~~ 316 (513)
...|+.+|..++|++ +.+.+|+.+.+.+.+|.....--+..+ . +......++|+-|. .++++|+.
T Consensus 34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~ 113 (385)
T KOG1034|consen 34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGY 113 (385)
T ss_pred hccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecc
Confidence 567889999999985 345677777788888876543222222 2 45567888888643 47899999
Q ss_pred CCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecC
Q 037288 317 NGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMD 396 (513)
Q Consensus 317 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~d 396 (513)
-|.|+|.|+.+++. .+.+.+|...|..+.++| .+.++++++|.|
T Consensus 114 ~GvIrVid~~~~~~---~~~~~ghG~sINeik~~p---------------------------------~~~qlvls~SkD 157 (385)
T KOG1034|consen 114 LGVIRVIDVVSGQC---SKNYRGHGGSINEIKFHP---------------------------------DRPQLVLSASKD 157 (385)
T ss_pred eeEEEEEecchhhh---ccceeccCccchhhhcCC---------------------------------CCCcEEEEecCC
Confidence 99999999998876 448889988888876654 357899999999
Q ss_pred CeEEEEecCCCCccceEEe---cCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 037288 397 GTVKLYDHRLTTRGAVQSY---EGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRS 452 (513)
Q Consensus 397 g~i~lwd~~~~~~~~~~~~---~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~ 452 (513)
..|++|+++ +..++..| .||.+.|.. ++|+++|.+|+++|.|.++++|++..
T Consensus 158 ~svRlwnI~--~~~Cv~VfGG~egHrdeVLS--vD~~~~gd~i~ScGmDhslk~W~l~~ 212 (385)
T KOG1034|consen 158 HSVRLWNIQ--TDVCVAVFGGVEGHRDEVLS--VDFSLDGDRIASCGMDHSLKLWRLNV 212 (385)
T ss_pred ceEEEEecc--CCeEEEEecccccccCcEEE--EEEcCCCCeeeccCCcceEEEEecCh
Confidence 999999997 55577666 689988755 99999999999999999999999974
No 174
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=2e-13 Score=132.03 Aligned_cols=245 Identities=12% Similarity=0.131 Sum_probs=164.7
Q ss_pred ccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEe-CCeEEE
Q 037288 203 ATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGT-NLGAAM 281 (513)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~v 281 (513)
..+||...+++.+ ..+|.+.+|++.. . ..........+.++.+|.++|.|++..+++..+.+|+ |++|+.
T Consensus 300 l~~~~sep~lit~-----sed~~lk~WnLqk--~--~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~ 370 (577)
T KOG0642|consen 300 LAFHPSEPVLITA-----SEDGTLKLWNLQK--A--KKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRC 370 (577)
T ss_pred hhcCCCCCeEEEe-----ccccchhhhhhcc--c--CCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeee
Confidence 3344554555433 3588888888832 1 1112223346889999999999999999999999885 666999
Q ss_pred EECCCC-------c----EEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeC
Q 037288 282 VDMETG-------M----ASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRN 350 (513)
Q Consensus 282 wd~~~~-------~----~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~ 350 (513)
|++... . .-.+.+|...|+.+++++....|++++.||+++.|+...... .++..-.. .+.-.++++.
T Consensus 371 w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e-~g~Plsvd~~ 448 (577)
T KOG0642|consen 371 WNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKE-HGYPLSVDRT 448 (577)
T ss_pred eccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccc-cCCcceEeec
Confidence 965421 1 123445889999999999988999999999999999877665 21222222 2333444443
Q ss_pred C-----eEEE---eEeecccCcccceeEe------ecC---CCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceE
Q 037288 351 D-----RVTN---EQWFELKANIWPSHTT------FMP---SSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQ 413 (513)
Q Consensus 351 ~-----~~~s---~~w~~~~~~~~~~~~~------~~~---~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~ 413 (513)
. .+.+ +.+....-.......+ ..+ ..+.- +...|.....+++..|+.|+++|.. ...++.
T Consensus 449 ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~-vVs~~~~~~~~~~hed~~Ir~~dn~--~~~~l~ 525 (577)
T KOG0642|consen 449 SSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINK-VVSHPTADITFTAHEDRSIRFFDNK--TGKILH 525 (577)
T ss_pred cchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccce-EEecCCCCeeEecccCCceeccccc--ccccch
Confidence 3 1111 1111111111000011 111 12333 3456677899999999999999986 445888
Q ss_pred EecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCC
Q 037288 414 SYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSN 463 (513)
Q Consensus 414 ~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~ 463 (513)
....|...+++ +++.|+|-+|++|+.||.+++|.+....++.....|.
T Consensus 526 s~~a~~~svts--lai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 526 SMVAHKDSVTS--LAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred heeeccceecc--eeecCCCceEEeecCCceeehhhccchheeecccccc
Confidence 88999999888 8889999999999999999999998888877765543
No 175
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.55 E-value=3.4e-13 Score=132.34 Aligned_cols=194 Identities=13% Similarity=0.172 Sum_probs=136.7
Q ss_pred eEEeccccCcEEEEEEcCCCCEEEEEeCC-eEEEEECCCC--------cEEEEe--------------------------
Q 037288 249 MHLVASFKCTVWTADFCTNPSQAVIGTNL-GAAMVDMETG--------MASWVC-------------------------- 293 (513)
Q Consensus 249 ~~~~~~h~~~V~~~~~s~~g~~l~s~s~~-~i~vwd~~~~--------~~~~~~-------------------------- 293 (513)
++++++|.+.|+|++|+.||+.+|+|+.+ .|.+|+-.-. ..+...
T Consensus 46 lqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~ 125 (1081)
T KOG1538|consen 46 LQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKS 125 (1081)
T ss_pred ccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhh
Confidence 57799999999999999999999999654 5899975421 011100
Q ss_pred --e--eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCC--------eEEEeEeec-
Q 037288 294 --R--SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND--------RVTNEQWFE- 360 (513)
Q Consensus 294 --~--~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~--------~~~s~~w~~- 360 (513)
+ ....|.+++|..||.+++.|-.||+|.+-+-....... +..--+...+|.+++|+| .+....|..
T Consensus 126 V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~-I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qT 204 (1081)
T KOG1538|consen 126 VSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVK-IERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQT 204 (1081)
T ss_pred HHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceE-EeCCCCCCCCceEEEecCCCCCCccceEEEEeccce
Confidence 0 12357889999999999999999999998655444433 556667899999999999 222222432
Q ss_pred -----ccCcccc-eeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCC
Q 037288 361 -----LKANIWP-SHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSER 434 (513)
Q Consensus 361 -----~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~ 434 (513)
..|+... .+.+ .-...|+ .+-++|.+++.|+.|+.+++|-- +.-.+.+.-.....+ +.+...|++.
T Consensus 205 LSFy~LsG~~Igk~r~L--~FdP~Ci-sYf~NGEy~LiGGsdk~L~~fTR---~GvrLGTvg~~D~WI--WtV~~~PNsQ 276 (1081)
T KOG1538|consen 205 LSFYQLSGKQIGKDRAL--NFDPCCI-SYFTNGEYILLGGSDKQLSLFTR---DGVRLGTVGEQDSWI--WTVQAKPNSQ 276 (1081)
T ss_pred eEEEEecceeecccccC--CCCchhh-eeccCCcEEEEccCCCceEEEee---cCeEEeeccccceeE--EEEEEccCCc
Confidence 2222211 1111 1123343 55679999999999999999974 333555555445555 4488899999
Q ss_pred EEEEEeCCCcEEEEeCC
Q 037288 435 FVMSGGEDCKLRIWSIR 451 (513)
Q Consensus 435 ~l~sg~~Dg~v~vwd~~ 451 (513)
.++.|+.||+|-.|++-
T Consensus 277 ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 277 YVVVGCQDGTIACYNLI 293 (1081)
T ss_pred eEEEEEccCeeehhhhH
Confidence 99999999999999874
No 176
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.53 E-value=7.1e-14 Score=129.89 Aligned_cols=192 Identities=14% Similarity=0.172 Sum_probs=142.2
Q ss_pred CcEEEEEEcCCCC-EEEEEe-CCeEEEEECCCCc------EEE----EeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEE
Q 037288 257 CTVWTADFCTNPS-QAVIGT-NLGAAMVDMETGM------ASW----VCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVD 324 (513)
Q Consensus 257 ~~V~~~~~s~~g~-~l~s~s-~~~i~vwd~~~~~------~~~----~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd 324 (513)
.+|..+.|.++.. .+++|+ |..|++|-+..+. .+. +.+|+..|+++.|+|+|.+|++|+.+|.|.+|-
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk 93 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWK 93 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEE
Confidence 5899999999776 888774 5569999776542 121 123888999999999999999999999999997
Q ss_pred CCCCccc-------------cccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEE
Q 037288 325 VRKRQRG-------------CSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFL 391 (513)
Q Consensus 325 ~~~~~~~-------------~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 391 (513)
...-... ...+.+.+|...|.. + +|++++++++
T Consensus 94 ~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diyd---------------------------------L-~Ws~d~~~l~ 139 (434)
T KOG1009|consen 94 QGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYD---------------------------------L-AWSPDSNFLV 139 (434)
T ss_pred ecCcCCccccchhhhCccceEEEEEecccccchhh---------------------------------h-hccCCCceee
Confidence 6621110 001223334444433 3 5677999999
Q ss_pred EEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec-----------
Q 037288 392 ASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDK----------- 460 (513)
Q Consensus 392 s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~----------- 460 (513)
+++.|..+++||++ ....+..+.+|...+.. ++|+|.++++++-+.|...+.+++...+.++...
T Consensus 140 s~s~dns~~l~Dv~--~G~l~~~~~dh~~yvqg--vawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~ 215 (434)
T KOG1009|consen 140 SGSVDNSVRLWDVH--AGQLLAILDDHEHYVQG--VAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNE 215 (434)
T ss_pred eeeccceEEEEEec--cceeEeeccccccccce--eecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCC
Confidence 99999999999998 56688888999988877 8999999999999999988888776544333211
Q ss_pred --------CC----CCCeEEEEEcCCCceEEeeCCCee
Q 037288 461 --------FS----NSVPSAVCWRTQRSMGPQIEGKIH 486 (513)
Q Consensus 461 --------~~----~~~v~~v~~~p~~~~~~t~~~~~~ 486 (513)
.| .+-...++|+|++.++++-.+-+.
T Consensus 216 ~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~ 253 (434)
T KOG1009|consen 216 REGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFK 253 (434)
T ss_pred CCcceeeeeecCchhhhhhhcccCCCCcEEEcccceee
Confidence 11 123566789999998888877766
No 177
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=1.7e-13 Score=128.34 Aligned_cols=187 Identities=10% Similarity=0.058 Sum_probs=131.2
Q ss_pred EEEEEcCCCCEEEEEe-CCeEEEEECCCCcE-EEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccc
Q 037288 260 WTADFCTNPSQAVIGT-NLGAAMVDMETGMA-SWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAG 337 (513)
Q Consensus 260 ~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~-~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~ 337 (513)
.+++|+.+|..+++|+ |+.+|||+..+... .....|+..|.++.|+|||++|++-+.| ..+||+.+++.... ..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a---~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALA---RK 223 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhh---hc
Confidence 7899999999999884 66699999665554 3444589999999999999999999999 99999999885433 22
Q ss_pred cc--cCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCC-----CEEEEEecCCeEEEEecCCCCcc
Q 037288 338 RR--HRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYD-----QYFLASSMDGTVKLYDHRLTTRG 410 (513)
Q Consensus 338 ~~--h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~l~s~s~dg~i~lwd~~~~~~~ 410 (513)
.. -...+..+ -|+.++ ..++.....+.|..||+...+..
T Consensus 224 t~~~k~~~~~~c----------------------------------RF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~ 269 (398)
T KOG0771|consen 224 TPFSKDEMFSSC----------------------------------RFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS 269 (398)
T ss_pred CCcccchhhhhc----------------------------------eecccCCCceEEEEEecCCCCceeEEEeeeeccc
Confidence 21 11111111 222233 22233334566777776432221
Q ss_pred ---ceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEe-cCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288 411 ---AVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFED-KFSNSVPSAVCWRTQRSMGPQIEGKIH 486 (513)
Q Consensus 411 ---~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~-~~~~~~v~~v~~~p~~~~~~t~~~~~~ 486 (513)
...+...-.+.+++ ++++++|++++.|+.||.|-|++..+.+.++-. +.|...|+.+.|+|+...+++.+.+..
T Consensus 270 ~~l~~~~~~~~~~siSs--l~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~ 347 (398)
T KOG0771|consen 270 NFLRLRKKIKRFKSISS--LAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNE 347 (398)
T ss_pred cccchhhhhhccCccee--EEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCc
Confidence 11111112234555 889999999999999999999999998887765 568889999999999777776665544
No 178
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=1.6e-13 Score=131.95 Aligned_cols=203 Identities=16% Similarity=0.123 Sum_probs=140.3
Q ss_pred EEeccccCcEEEEEEcCCCCEEEEEeCCe-EEEEECCCCcEEEEee--eCCCeEEEEEecC--CcEEEEEeCCCeEEEEE
Q 037288 250 HLVASFKCTVWTADFCTNPSQAVIGTNLG-AAMVDMETGMASWVCR--SKSDILAQQVIHS--GNVVLCGFRNGAIVTVD 324 (513)
Q Consensus 250 ~~~~~h~~~V~~~~~s~~g~~l~s~s~~~-i~vwd~~~~~~~~~~~--~~~~V~~l~~~~~--~~~l~sg~~dg~i~iwd 324 (513)
..+.||++.|+|++|+.+|.+|++|+|+. +.|||....+.+..+. |...|++++|-|. ..++++|..|..|+++|
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd 123 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD 123 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence 45899999999999999999999999998 9999998888777665 8888999999994 47999999999999999
Q ss_pred CCCCcccc-------ccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCC-CEEEEEecC
Q 037288 325 VRKRQRGC-------SSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYD-QYFLASSMD 396 (513)
Q Consensus 325 ~~~~~~~~-------~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~s~s~d 396 (513)
+...+... +...+..|...|.. + +..|++ +.|.+++.|
T Consensus 124 l~~~~~~~~d~~~~~~~~~~~cht~rVKr---------------------------------i-a~~p~~PhtfwsasED 169 (758)
T KOG1310|consen 124 LDSSKEGGMDHGMEETTRCWSCHTDRVKR---------------------------------I-ATAPNGPHTFWSASED 169 (758)
T ss_pred cccccccccccCccchhhhhhhhhhhhhh---------------------------------e-ecCCCCCceEEEecCC
Confidence 98543211 01223333333322 2 223444 889999999
Q ss_pred CeEEEEecCCCCcc-----ceEEe-cCCCCceeEEEEEEcCC-CCEEEEEeCCCcEEEEeCCC--------Ce-------
Q 037288 397 GTVKLYDHRLTTRG-----AVQSY-EGHVNSHTRIQLGVDQS-ERFVMSGGEDCKLRIWSIRS--------GE------- 454 (513)
Q Consensus 397 g~i~lwd~~~~~~~-----~~~~~-~~h~~~v~~~~~~~s~~-g~~l~sg~~Dg~v~vwd~~~--------~~------- 454 (513)
|+|+-+|+|.+... +...+ .-+...+...++.++|. ..+|+.|+.|-..++||.+. +.
T Consensus 170 GtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~ 249 (758)
T KOG1310|consen 170 GTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPK 249 (758)
T ss_pred cceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCc
Confidence 99999999942111 11111 12233344455888886 56889999999999999421 11
Q ss_pred ---EEEEe-cCC-----------CCCeEEEEEcCCC-ceEEeeCCCee
Q 037288 455 ---LVFED-KFS-----------NSVPSAVCWRTQR-SMGPQIEGKIH 486 (513)
Q Consensus 455 ---~~~~~-~~~-----------~~~v~~v~~~p~~-~~~~t~~~~~~ 486 (513)
++.-+ .+| -..++-++|+|++ .+|++-+++..
T Consensus 250 ~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhV 297 (758)
T KOG1310|consen 250 DCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHV 297 (758)
T ss_pred ccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEE
Confidence 11111 111 0125678899995 57777777655
No 179
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=9.9e-13 Score=119.86 Aligned_cols=218 Identities=11% Similarity=0.067 Sum_probs=142.4
Q ss_pred cCCCccEEEEecCCCCCCCCCcccccCceeEEecccc-CcEEEEEEcCCCCEEEEEeCC-----eEEEEECCCCcE-EEE
Q 037288 220 ETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFK-CTVWTADFCTNPSQAVIGTNL-----GAAMVDMETGMA-SWV 292 (513)
Q Consensus 220 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~~~~s~~g~~l~s~s~~-----~i~vwd~~~~~~-~~~ 292 (513)
+..+|.+.+|++....... .+...+|. .+..|++.+.+++.+++|... .+.+||++..+. +..
T Consensus 90 ~ssDG~Vr~wD~Rs~~e~a----------~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~ 159 (376)
T KOG1188|consen 90 CSSDGTVRLWDIRSQAESA----------RISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQ 159 (376)
T ss_pred eccCCeEEEEEeecchhhh----------heeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhh
Confidence 4478999999987554432 22344444 577888888889999988642 389999997765 444
Q ss_pred ee--eCCCeEEEEEecCC-cEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCC----eEEEeE-------e
Q 037288 293 CR--SKSDILAQQVIHSG-NVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND----RVTNEQ-------W 358 (513)
Q Consensus 293 ~~--~~~~V~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~----~~~s~~-------w 358 (513)
+. |...|+++.|+|.. ++|++|+.||.|.+||+......-.+.....|...|..+.|.. ++..-+ |
T Consensus 160 ~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ 239 (376)
T KOG1188|consen 160 LNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIY 239 (376)
T ss_pred hhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEE
Confidence 43 88999999999965 8999999999999999987654333556667788899999976 333332 6
Q ss_pred ecccCcccceeEee-----------cCCCceEEEEEcCCCCEEEEEec-CCeEEEEecCCCCc----cceEEecCC-CCc
Q 037288 359 FELKANIWPSHTTF-----------MPSSISCLQSLQLYDQYFLASSM-DGTVKLYDHRLTTR----GAVQSYEGH-VNS 421 (513)
Q Consensus 359 ~~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~~l~s~s~-dg~i~lwd~~~~~~----~~~~~~~~h-~~~ 421 (513)
+...+......... .-..+... ..+.+...++.++. -+...++-+..... ..+..+.+| ..-
T Consensus 240 ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~-~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~ei 318 (376)
T KOG1188|consen 240 ELEDGSEETWLENPDVSADDLRKEDNCDYVINE-HSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEI 318 (376)
T ss_pred EccCCChhhcccCccchhhhHHhhhhhhheeec-ccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHH
Confidence 66655421000000 00111111 11334455555554 56666654431111 155566664 444
Q ss_pred eeEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 037288 422 HTRIQLGVDQSERFVMSGGEDCKLRIWSI 450 (513)
Q Consensus 422 v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~ 450 (513)
|.. +.|...+..+++||+||.+.+|..
T Consensus 319 VR~--i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 319 VRD--ILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred HHH--HhhhcccceeeccCCCceEEEEec
Confidence 433 677788899999999999999986
No 180
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=3.4e-12 Score=129.55 Aligned_cols=210 Identities=7% Similarity=-0.004 Sum_probs=143.1
Q ss_pred EEeccccCcEEEEEEcCCCCEEEEEeCC----eEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEE-eCCCeEEEE-
Q 037288 250 HLVASFKCTVWTADFCTNPSQAVIGTNL----GAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCG-FRNGAIVTV- 323 (513)
Q Consensus 250 ~~~~~h~~~V~~~~~s~~g~~l~s~s~~----~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg-~~dg~i~iw- 323 (513)
..+..|...+....|+|||+.|+.++.+ .|.+||+.+++...+........+++|+|||+.|+.+ +.+|.+.||
T Consensus 197 ~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~ 276 (429)
T PRK01742 197 FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYV 276 (429)
T ss_pred eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEEE
Confidence 3466788899999999999999876432 4999999988754444344445678999999877765 468876655
Q ss_pred -ECCCCccccccccccccCcCeEEEeeCC---eEEEeE--------eecccCcccceeEeecCCCceEEEEEcCCCCEEE
Q 037288 324 -DVRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ--------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFL 391 (513)
Q Consensus 324 -d~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~--------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 391 (513)
|+.++. ...+..+...+....|+| .++..+ |......... ..+... . .+ ..++|+|++|+
T Consensus 277 ~d~~~~~----~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~-~~l~~~-~-~~-~~~SpDG~~ia 348 (429)
T PRK01742 277 MGANGGT----PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA-SLVGGR-G-YS-AQISADGKTLV 348 (429)
T ss_pred EECCCCC----eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEecCC-C-CC-ccCCCCCCEEE
Confidence 665443 345666777788899999 344333 4443221111 112111 1 22 46899999999
Q ss_pred EEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeC--CCCeEEEEecCCCCCeEEE
Q 037288 392 ASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSI--RSGELVFEDKFSNSVPSAV 469 (513)
Q Consensus 392 s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~--~~~~~~~~~~~~~~~v~~v 469 (513)
.++.++ +.+||+. ... ...+..+. ... ...|+|+|++|+.++.++.+.+|.+ .+|..+..+..+.+.+...
T Consensus 349 ~~~~~~-i~~~Dl~--~g~-~~~lt~~~-~~~--~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p 421 (429)
T PRK01742 349 MINGDN-VVKQDLT--SGS-TEVLSSTF-LDE--SPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFP 421 (429)
T ss_pred EEcCCC-EEEEECC--CCC-eEEecCCC-CCC--CceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCc
Confidence 888765 5569985 322 22232221 112 2679999999999999999988876 3688888888888888999
Q ss_pred EEcCC
Q 037288 470 CWRTQ 474 (513)
Q Consensus 470 ~~~p~ 474 (513)
+|+|.
T Consensus 422 ~wsp~ 426 (429)
T PRK01742 422 AWSPY 426 (429)
T ss_pred ccCCC
Confidence 99986
No 181
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=7e-13 Score=120.82 Aligned_cols=184 Identities=15% Similarity=0.153 Sum_probs=139.8
Q ss_pred EEE-EEeCCeEEEEECCCCcEEEEee-eCCCeEEEEEec--CCcEEEEEeCCCeEEEEECCCCccccccccccccC-cCe
Q 037288 270 QAV-IGTNLGAAMVDMETGMASWVCR-SKSDILAQQVIH--SGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHR-IPY 344 (513)
Q Consensus 270 ~l~-s~s~~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~--~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~-~~v 344 (513)
.+| +.+++.|++||..+++.+..+. ++..+..+.|.. ..+.+.+|+.||+|++||+|.....+ ......+. .+.
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a-~~~~~~~~~~~f 120 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESA-RISWTQQSGTPF 120 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhh-heeccCCCCCcc
Confidence 344 4488889999999988777666 666688899987 45899999999999999999988766 55566665 567
Q ss_pred EEEeeCC--eEEE-eE-----------eecccCcc-cceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCc
Q 037288 345 SRLQRND--RVTN-EQ-----------WFELKANI-WPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTR 409 (513)
Q Consensus 345 ~~v~~~~--~~~s-~~-----------w~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~ 409 (513)
.+++.+- .++. |. ||.+..+. .....-.|.+.|+++.+.+.+.++|++||.||-|.+||+.....
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 7777753 3333 33 99988765 34444568889999988888899999999999999999963322
Q ss_pred c--ceEEecCCCCceeEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCeEEE
Q 037288 410 G--AVQSYEGHVNSHTRIQLGVDQSE-RFVMSGGEDCKLRIWSIRSGELVF 457 (513)
Q Consensus 410 ~--~~~~~~~h~~~v~~~~~~~s~~g-~~l~sg~~Dg~v~vwd~~~~~~~~ 457 (513)
. .+.++. |...|.. +.|..++ +.|.+-+...+..+|++..+....
T Consensus 201 eDaL~~viN-~~sSI~~--igw~~~~ykrI~clTH~Etf~~~ele~~~~~~ 248 (376)
T KOG1188|consen 201 EDALLHVIN-HGSSIHL--IGWLSKKYKRIMCLTHMETFAIYELEDGSEET 248 (376)
T ss_pred hhhHHHhhc-ccceeee--eeeecCCcceEEEEEccCceeEEEccCCChhh
Confidence 2 444444 6666666 7887776 458888999999999998876443
No 182
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.49 E-value=2.1e-13 Score=133.03 Aligned_cols=187 Identities=15% Similarity=0.135 Sum_probs=137.2
Q ss_pred EEcCCCCEEE---EEeCCeEEEEECCCCc-----EEEEeeeCCCeEEEEEec-CCcEEEEEeCCCeEEEEECCCCcccc-
Q 037288 263 DFCTNPSQAV---IGTNLGAAMVDMETGM-----ASWVCRSKSDILAQQVIH-SGNVVLCGFRNGAIVTVDVRKRQRGC- 332 (513)
Q Consensus 263 ~~s~~g~~l~---s~s~~~i~vwd~~~~~-----~~~~~~~~~~V~~l~~~~-~~~~l~sg~~dg~i~iwd~~~~~~~~- 332 (513)
.|+.+...+| +|+.+.|-|+++...- .+-.+.....|+.+.|+| |...|++++.||.|++|.+..+....
T Consensus 586 Gfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~ 665 (1012)
T KOG1445|consen 586 GFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN 665 (1012)
T ss_pred ceeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcc
Confidence 3445556665 3445669999987532 222333566799999999 66899999999999999986543211
Q ss_pred ---ccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCc
Q 037288 333 ---SSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTR 409 (513)
Q Consensus 333 ---~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~ 409 (513)
.-..+.+|...|+++.|+| --.+.|++++.|.+|++||++ ..
T Consensus 666 ~~tPe~~lt~h~eKI~slRfHP---------------------------------LAadvLa~asyd~Ti~lWDl~--~~ 710 (1012)
T KOG1445|consen 666 EMTPEKILTIHGEKITSLRFHP---------------------------------LAADVLAVASYDSTIELWDLA--NA 710 (1012)
T ss_pred cCCcceeeecccceEEEEEecc---------------------------------hhhhHhhhhhccceeeeeehh--hh
Confidence 1345778888888877766 135678999999999999998 44
Q ss_pred cceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-EEEEecCC-CCCeEEEEEcCCCceEEeeCCCee
Q 037288 410 GAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGE-LVFEDKFS-NSVPSAVCWRTQRSMGPQIEGKIH 486 (513)
Q Consensus 410 ~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~-~~~~~~~~-~~~v~~v~~~p~~~~~~t~~~~~~ 486 (513)
.....+.+|.+.|.. ++|+|+|+.+++.|.||+|++|+-++++ ++++-++. +..-..+.|.-++.+++..+.|-.
T Consensus 711 ~~~~~l~gHtdqIf~--~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~ 787 (1012)
T KOG1445|consen 711 KLYSRLVGHTDQIFG--IAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKS 787 (1012)
T ss_pred hhhheeccCcCceeE--EEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEeccccc
Confidence 466788999999866 9999999999999999999999998865 44442221 223345778878777776666654
No 183
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=3.3e-11 Score=105.05 Aligned_cols=192 Identities=14% Similarity=0.140 Sum_probs=129.5
Q ss_pred CcEEEEEEcCC-CCEEEEEeCCeEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCcccccc
Q 037288 257 CTVWTADFCTN-PSQAVIGTNLGAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSS 334 (513)
Q Consensus 257 ~~V~~~~~s~~-g~~l~s~s~~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~ 334 (513)
-.|+++-+.|. +.++.+|+|+.++-||+++|+..+.++ |...|.++.--.....+++|+.||++++||.++++... +
T Consensus 115 PeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~-~ 193 (325)
T KOG0649|consen 115 PEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVS-M 193 (325)
T ss_pred CccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeE-E
Confidence 36889999874 556667788889999999999888887 77779999875555678999999999999999998754 1
Q ss_pred ccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEE
Q 037288 335 RAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQS 414 (513)
Q Consensus 335 ~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~ 414 (513)
.....|... .-.+.+.. +.++..+...++.|+ ...+.+|.+|..+..++..
T Consensus 194 ie~yk~~~~--------------------------lRp~~g~w--igala~~edWlvCGg-Gp~lslwhLrsse~t~vfp 244 (325)
T KOG0649|consen 194 IEPYKNPNL--------------------------LRPDWGKW--IGALAVNEDWLVCGG-GPKLSLWHLRSSESTCVFP 244 (325)
T ss_pred eccccChhh--------------------------cCcccCce--eEEEeccCceEEecC-CCceeEEeccCCCceEEEe
Confidence 111111110 00111111 123444677777665 5689999999544335666
Q ss_pred ecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288 415 YEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIH 486 (513)
Q Consensus 415 ~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~ 486 (513)
+.+|... +.|. +..++++++.+.|.-|-+ +|.+-..........+...|+....-+++..+.-.
T Consensus 245 ipa~v~~-----v~F~--~d~vl~~G~g~~v~~~~l-~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~ 308 (325)
T KOG0649|consen 245 IPARVHL-----VDFV--DDCVLIGGEGNHVQSYTL-NGVLQANIPVESTACYSASWQTSPIKFISIAGFSN 308 (325)
T ss_pred cccceeE-----eeee--cceEEEeccccceeeeee-ccEEEEeccCCccceeeecccCCceEEEEecccce
Confidence 6666433 4554 567899999999999986 45554455554555777778777666666555433
No 184
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.48 E-value=7.3e-13 Score=129.39 Aligned_cols=226 Identities=13% Similarity=0.122 Sum_probs=153.2
Q ss_pred cceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcC-CCCEEEEEeCCe-EEEEECCCC
Q 037288 210 RHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCT-NPSQAVIGTNLG-AAMVDMETG 287 (513)
Q Consensus 210 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~-~g~~l~s~s~~~-i~vwd~~~~ 287 (513)
..+.+.+.| ..|.+.+|.+..|-..-. .+..-.-....|.++.|.| |...||++.|++ |++|.+..+
T Consensus 592 ~rvAVPL~g---~gG~iai~el~~PGrLPD--------gv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~ 660 (1012)
T KOG1445|consen 592 KRVAVPLAG---SGGVIAIYELNEPGRLPD--------GVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTAN 660 (1012)
T ss_pred ceEEEEecC---CCceEEEEEcCCCCCCCc--------ccccccccCceeeecccCCCChHHeeecccCceEEEEEeccC
Confidence 334444442 346777788775533211 0111112335799999999 777888776655 999988754
Q ss_pred c-------EEEE-eeeCCCeEEEEEecCC-cEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEe
Q 037288 288 M-------ASWV-CRSKSDILAQQVIHSG-NVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQW 358 (513)
Q Consensus 288 ~-------~~~~-~~~~~~V~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w 358 (513)
- +... ..|...|+++.|+|-. ++|++++.|.+|++||+++.+... .+.+|.+.|..++|
T Consensus 661 gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~---~l~gHtdqIf~~AW--------- 728 (1012)
T KOG1445|consen 661 GLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYS---RLVGHTDQIFGIAW--------- 728 (1012)
T ss_pred CCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhh---eeccCcCceeEEEE---------
Confidence 2 2223 3477889999999954 899999999999999999988644 89999999998655
Q ss_pred ecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCcc-ceEEecCCCCceeEEEEEEcCCCCEEE
Q 037288 359 FELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRG-AVQSYEGHVNSHTRIQLGVDQSERFVM 437 (513)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~-~~~~~~~h~~~v~~~~~~~s~~g~~l~ 437 (513)
+|+|+.+++.+.||+|++|..| +.. ++..-.+..+ -...++.|.-||++++
T Consensus 729 -------------------------SpdGr~~AtVcKDg~~rVy~Pr--s~e~pv~Eg~gpvg-tRgARi~wacdgr~vi 780 (1012)
T KOG1445|consen 729 -------------------------SPDGRRIATVCKDGTLRVYEPR--SREQPVYEGKGPVG-TRGARILWACDGRIVI 780 (1012)
T ss_pred -------------------------CCCCcceeeeecCceEEEeCCC--CCCCccccCCCCcc-CcceeEEEEecCcEEE
Confidence 5699999999999999999998 433 5554444333 2234467777899999
Q ss_pred EEeCCC----cEEEEeCCCC--eEEEEecCCCC-CeEEEEEcCC-CceEEeeCCCee
Q 037288 438 SGGEDC----KLRIWSIRSG--ELVFEDKFSNS-VPSAVCWRTQ-RSMGPQIEGKIH 486 (513)
Q Consensus 438 sg~~Dg----~v~vwd~~~~--~~~~~~~~~~~-~v~~v~~~p~-~~~~~t~~~~~~ 486 (513)
+.|.|. .|.+||..+- .++.+....-+ .+.--.+.++ +.+|+|+-+|-.
T Consensus 781 v~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~ 837 (1012)
T KOG1445|consen 781 VVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRF 837 (1012)
T ss_pred EecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCce
Confidence 888764 6888887653 34443221111 1222344555 678888877755
No 185
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.48 E-value=3.3e-12 Score=112.54 Aligned_cols=148 Identities=15% Similarity=0.276 Sum_probs=108.6
Q ss_pred CCeEEEEEec-CC--cEEEEEeCCCeEEEEECCCCcccc-------ccccccccCcCeEEEeeCC------------eEE
Q 037288 297 SDILAQQVIH-SG--NVVLCGFRNGAIVTVDVRKRQRGC-------SSRAGRRHRIPYSRLQRND------------RVT 354 (513)
Q Consensus 297 ~~V~~l~~~~-~~--~~l~sg~~dg~i~iwd~~~~~~~~-------~~~~~~~h~~~v~~v~~~~------------~~~ 354 (513)
+.++|..+.. ++ -++++|-++|.|.+||+.++.... .......|..+|.+++|.+ .++
T Consensus 151 gsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~ 230 (323)
T KOG0322|consen 151 GSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLV 230 (323)
T ss_pred CceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccce
Confidence 3467776543 23 367788889999999999863211 1234567999999999987 222
Q ss_pred EeE--eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCC
Q 037288 355 NEQ--WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQS 432 (513)
Q Consensus 355 s~~--w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~ 432 (513)
.-+ |+...-+.....++++++ +.. +.+.||++.||+++.|+.|++|..+ +..++..++-|...+.+ ++|+|+
T Consensus 231 ~~Sl~~s~gslq~~~e~~lknpG-v~g-vrIRpD~KIlATAGWD~RiRVyswr--tl~pLAVLkyHsagvn~--vAfspd 304 (323)
T KOG0322|consen 231 MYSLNHSTGSLQIRKEITLKNPG-VSG-VRIRPDGKILATAGWDHRIRVYSWR--TLNPLAVLKYHSAGVNA--VAFSPD 304 (323)
T ss_pred eeeeccccCcccccceEEecCCC-ccc-eEEccCCcEEeecccCCcEEEEEec--cCCchhhhhhhhcceeE--EEeCCC
Confidence 222 333333333344444433 222 4678999999999999999999998 66689999999988877 999999
Q ss_pred CCEEEEEeCCCcEEEEeC
Q 037288 433 ERFVMSGGEDCKLRIWSI 450 (513)
Q Consensus 433 g~~l~sg~~Dg~v~vwd~ 450 (513)
...+++++.|+.|-+|++
T Consensus 305 ~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 305 CELMAAASKDARISLWKL 322 (323)
T ss_pred CchhhhccCCceEEeeec
Confidence 999999999999999986
No 186
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=5.6e-13 Score=128.92 Aligned_cols=235 Identities=9% Similarity=0.022 Sum_probs=159.3
Q ss_pred EEeccccCcEEEEEEcCCCCEEEEEeCCe-EEEEECCCC--------cEEEEee-eCCCeEEEEEecCCcEEEEEeCCCe
Q 037288 250 HLVASFKCTVWTADFCTNPSQAVIGTNLG-AAMVDMETG--------MASWVCR-SKSDILAQQVIHSGNVVLCGFRNGA 319 (513)
Q Consensus 250 ~~~~~h~~~V~~~~~s~~g~~l~s~s~~~-i~vwd~~~~--------~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~ 319 (513)
.++..|.+.|..++|++....|++++.++ +++|+++.. +++.++. |.++|.|++..+.+..+++|+.||+
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence 36889999999999999988999887655 899999321 2455554 9999999999999999999999999
Q ss_pred EEEEECCCC-------ccccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeEeecCCCceEEEE
Q 037288 320 IVTVDVRKR-------QRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQS 382 (513)
Q Consensus 320 i~iwd~~~~-------~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~ 382 (513)
|+.|++-.. ....-...+.||.+.|+.++++. ++++++ |....................++-.
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~ 447 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDR 447 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEee
Confidence 999965411 11111346889999999999998 788876 6655544310001111111222211
Q ss_pred EcCCCCEEEEEecCCeEEEEecCCCCcc-ceEEecCC--CCc---eeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE
Q 037288 383 LQLYDQYFLASSMDGTVKLYDHRLTTRG-AVQSYEGH--VNS---HTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELV 456 (513)
Q Consensus 383 ~~~~~~~l~s~s~dg~i~lwd~~~~~~~-~~~~~~~h--~~~---v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~ 456 (513)
.+..-...++ +.....+++...... .+..+... .+. -....+..+|.+.+.+++..|+.|+++|..+++++
T Consensus 448 ~ss~~a~~~~---s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l 524 (577)
T KOG0642|consen 448 TSSRPAHSLA---SFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKIL 524 (577)
T ss_pred ccchhHhhhh---hcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccc
Confidence 1111112222 233333333211211 22222211 111 11123667899999999999999999999999999
Q ss_pred EEecCCCCCeEEEEEcCCCceEEeeCCCeee
Q 037288 457 FEDKFSNSVPSAVCWRTQRSMGPQIEGKIHE 487 (513)
Q Consensus 457 ~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~~ 487 (513)
+....|...++++++.|++.+|++...|-..
T Consensus 525 ~s~~a~~~svtslai~~ng~~l~s~s~d~sv 555 (577)
T KOG0642|consen 525 HSMVAHKDSVTSLAIDPNGPYLMSGSHDGSV 555 (577)
T ss_pred hheeeccceecceeecCCCceEEeecCCcee
Confidence 9999999999999999999999999888653
No 187
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.47 E-value=4.1e-13 Score=124.93 Aligned_cols=156 Identities=14% Similarity=0.188 Sum_probs=125.4
Q ss_pred eCCCeEEEEEecCCc-EEEEEeCCCeEEEEECCCCcccc------ccccccccCcCeEEEeeCCeEEEeEeecccCcccc
Q 037288 295 SKSDILAQQVIHSGN-VVLCGFRNGAIVTVDVRKRQRGC------SSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWP 367 (513)
Q Consensus 295 ~~~~V~~l~~~~~~~-~l~sg~~dg~i~iwd~~~~~~~~------~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~ 367 (513)
.+.+|.++.|.++.. .+++|+.|..|++|-+....... -+..|..|..+|+.
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~--------------------- 70 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNV--------------------- 70 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEE---------------------
Confidence 455699999998774 99999999999999886543321 12345555555555
Q ss_pred eeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecC--------C------CCccceEEecCCCCceeEEEEEEcCCC
Q 037288 368 SHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHR--------L------TTRGAVQSYEGHVNSHTRIQLGVDQSE 433 (513)
Q Consensus 368 ~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~--------~------~~~~~~~~~~~h~~~v~~~~~~~s~~g 433 (513)
+.|+|+|+.|++|+.+|.|.+|-.. . ......+.+.+|...++. ++|+|++
T Consensus 71 -------------vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diyd--L~Ws~d~ 135 (434)
T KOG1009|consen 71 -------------VRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYD--LAWSPDS 135 (434)
T ss_pred -------------EEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhh--hhccCCC
Confidence 4667799999999999999999754 1 001134567789888866 9999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288 434 RFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIH 486 (513)
Q Consensus 434 ~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~ 486 (513)
.++++|+.|..+++||+..|+++..+..|..-|..++|.|-..++++-+.|-+
T Consensus 136 ~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~ 188 (434)
T KOG1009|consen 136 NFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRH 188 (434)
T ss_pred ceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcc
Confidence 99999999999999999999999999999999999999999888887777753
No 188
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.47 E-value=6.6e-12 Score=113.64 Aligned_cols=221 Identities=10% Similarity=0.071 Sum_probs=161.5
Q ss_pred cccCcEEEEEEcCCCCEEEEEeCC-eEEEEECCCCc---EEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEEC-CC
Q 037288 254 SFKCTVWTADFCTNPSQAVIGTNL-GAAMVDMETGM---ASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDV-RK 327 (513)
Q Consensus 254 ~h~~~V~~~~~s~~g~~l~s~s~~-~i~vwd~~~~~---~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~-~~ 327 (513)
-...+|+|.+|++|+..+|.+-+. .|.||...... ...++. |...|+.|+|+|..+.|++++.|..-++|.. ..
T Consensus 8 ~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 8 RLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred eccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCC
Confidence 344799999999999999988665 58888876554 344444 7788999999999999999999999999998 44
Q ss_pred CccccccccccccCcCeEEEeeCC---eEEEeE--------eecccCcccceeEeec--CCCceEEEEEcCCCCEEEEEe
Q 037288 328 RQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ--------WFELKANIWPSHTTFM--PSSISCLQSLQLYDQYFLASS 394 (513)
Q Consensus 328 ~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~--------w~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~s~s 394 (513)
+...+ .-.+..++.+.++|.|+| .|++|+ |...+...+..+.++. .+.|.++ .++|++-+|++|+
T Consensus 88 ~~Wkp-tlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sl-dWhpnnVLlaaGs 165 (361)
T KOG1523|consen 88 GTWKP-TLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSL-DWHPNNVLLAAGS 165 (361)
T ss_pred Ceecc-ceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeee-eccCCcceecccc
Confidence 44444 557889999999999999 666666 4444555544444433 4677776 6778999999999
Q ss_pred cCCeEEEEecCCC------------Cc---c-ceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-EEE
Q 037288 395 MDGTVKLYDHRLT------------TR---G-AVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGE-LVF 457 (513)
Q Consensus 395 ~dg~i~lwd~~~~------------~~---~-~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~-~~~ 457 (513)
.|+.++++..... ++ + .+..+....+.+ ..+.|+|+|..|+-.+.|.+|.+=|..... .+.
T Consensus 166 ~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwv--h~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~ 243 (361)
T KOG1523|consen 166 TDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWV--HGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQ 243 (361)
T ss_pred cCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCce--eeeEeCCCCCEeeEecCCCceEEeecCCCchhcc
Confidence 9999999964210 00 0 222333333444 448999999999999999999999987664 444
Q ss_pred EecCCCCCeEEEEEcCCCceE
Q 037288 458 EDKFSNSVPSAVCWRTQRSMG 478 (513)
Q Consensus 458 ~~~~~~~~v~~v~~~p~~~~~ 478 (513)
......-|..++.|-.+..++
T Consensus 244 ~~~~~~lP~ls~~~ise~~vv 264 (361)
T KOG1523|consen 244 SVATAQLPLLSVSWISENSVV 264 (361)
T ss_pred chhhccCCceeeEeecCCcee
Confidence 444444667777776554333
No 189
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.46 E-value=2.6e-11 Score=111.84 Aligned_cols=184 Identities=13% Similarity=0.144 Sum_probs=132.7
Q ss_pred cEEEEEEcCCCCEEEEE-eCC--eEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCcccccc
Q 037288 258 TVWTADFCTNPSQAVIG-TNL--GAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSS 334 (513)
Q Consensus 258 ~V~~~~~s~~g~~l~s~-s~~--~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~ 334 (513)
.|-.+-|+ ..++|.. .++ .+++.++..+..+..+.....|.+|.++.+ .|++.-.+ .|+|||+++.+...++
T Consensus 48 ~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr~--RLvV~Lee-~IyIydI~~MklLhTI 122 (391)
T KOG2110|consen 48 SIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTICEIFFPTSILAVRMNRK--RLVVCLEE-SIYIYDIKDMKLLHTI 122 (391)
T ss_pred EEEEeecc--cceeEEEecCCCceEEEEEcccCceEEEEecCCceEEEEEccc--eEEEEEcc-cEEEEecccceeehhh
Confidence 34444454 3355533 233 289999998888887888899999999743 44444443 4999999998875533
Q ss_pred ccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEe--cCCeEEEEecCCCCccce
Q 037288 335 RAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASS--MDGTVKLYDHRLTTRGAV 412 (513)
Q Consensus 335 ~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s--~dg~i~lwd~~~~~~~~~ 412 (513)
.....+...+.+ ...++.+.+++.-+ ..|.|.+||.. ...++
T Consensus 123 ~t~~~n~~gl~A----------------------------------lS~n~~n~ylAyp~s~t~GdV~l~d~~--nl~~v 166 (391)
T KOG2110|consen 123 ETTPPNPKGLCA----------------------------------LSPNNANCYLAYPGSTTSGDVVLFDTI--NLQPV 166 (391)
T ss_pred hccCCCccceEe----------------------------------eccCCCCceEEecCCCCCceEEEEEcc--cceee
Confidence 333333332322 13333455777533 36999999997 55689
Q ss_pred EEecCCCCceeEEEEEEcCCCCEEEEEeCCCc-EEEEeCCCCeEEEEecCCC--CCeEEEEEcCCCceEEeeCCC
Q 037288 413 QSYEGHVNSHTRIQLGVDQSERFVMSGGEDCK-LRIWSIRSGELVFEDKFSN--SVPSAVCWRTQRSMGPQIEGK 484 (513)
Q Consensus 413 ~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~-v~vwd~~~~~~~~~~~~~~--~~v~~v~~~p~~~~~~t~~~~ 484 (513)
..+..|.+.+.+ ++|+++|.+||+++..|+ |||+.+.+|+.+.+++... ..|.+++|+|+..+++.++..
T Consensus 167 ~~I~aH~~~lAa--lafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~T 239 (391)
T KOG2110|consen 167 NTINAHKGPLAA--LAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNT 239 (391)
T ss_pred eEEEecCCceeE--EEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCC
Confidence 999999999987 999999999999999997 6999999999999987643 347899999998777666543
No 190
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.46 E-value=1.8e-12 Score=124.66 Aligned_cols=195 Identities=15% Similarity=0.173 Sum_probs=125.3
Q ss_pred CCCCEEEEE-eCCeEEEEECCCCcEEEEee-----eCCCeEEEEEecCC-cEEEEEeCCCeEEEEECCCCcccccccccc
Q 037288 266 TNPSQAVIG-TNLGAAMVDMETGMASWVCR-----SKSDILAQQVIHSG-NVVLCGFRNGAIVTVDVRKRQRGCSSRAGR 338 (513)
Q Consensus 266 ~~g~~l~s~-s~~~i~vwd~~~~~~~~~~~-----~~~~V~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~ 338 (513)
+.+.-+..| ..+.|.+.|....+..+++. .+..|+|+.|-|.+ ..++++-.+|.+.+||........ --...
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t-~p~~~ 261 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGAT-APSYQ 261 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCC-CCccc
Confidence 455555566 44557766655433222222 34679999999955 678888899999999874221110 00111
Q ss_pred ccCcCeEEEeeCCeEEEeEeecccCcccceeEeec-CCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecC
Q 037288 339 RHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFM-PSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEG 417 (513)
Q Consensus 339 ~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~ 417 (513)
.+..+= .+....|...... .|...... ...+.. .+|++||++||+.+.||.++|||.. ....+..++.
T Consensus 262 ~~k~~~-------~f~i~t~ksk~~r-NPv~~w~~~~g~in~-f~FS~DG~~LA~VSqDGfLRvF~fd--t~eLlg~mkS 330 (636)
T KOG2394|consen 262 ALKDGD-------QFAILTSKSKKTR-NPVARWHIGEGSINE-FAFSPDGKYLATVSQDGFLRIFDFD--TQELLGVMKS 330 (636)
T ss_pred ccCCCC-------eeEEeeeeccccC-CccceeEeccccccc-eeEcCCCceEEEEecCceEEEeecc--HHHHHHHHHh
Confidence 111000 0000001111000 11222222 223333 4788999999999999999999996 3334444444
Q ss_pred CCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCC
Q 037288 418 HVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQ 474 (513)
Q Consensus 418 h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~ 474 (513)
.-+.. ++++|||||++|++||+|--|.||++..++.+..-.+|.++|+.|+|.|-
T Consensus 331 YFGGL--LCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpy 385 (636)
T KOG2394|consen 331 YFGGL--LCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPY 385 (636)
T ss_pred hccce--EEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeeccc
Confidence 44444 45999999999999999999999999999999999999999999999983
No 191
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.44 E-value=1.2e-10 Score=117.13 Aligned_cols=198 Identities=17% Similarity=0.274 Sum_probs=150.3
Q ss_pred CccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEe--CCeEEEEECCCCcEEEEee-eCCCe
Q 037288 223 GGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGT--NLGAAMVDMETGMASWVCR-SKSDI 299 (513)
Q Consensus 223 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s--~~~i~vwd~~~~~~~~~~~-~~~~V 299 (513)
++.+.+|+... .......+..|...|.+++|+|++..+++++ ++.+++|++.++..+..+. |...|
T Consensus 133 d~~~~~~~~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 201 (466)
T COG2319 133 DGTVKLWDLST-----------PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPV 201 (466)
T ss_pred CccEEEEEecC-----------CCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCce
Confidence 55666666553 1223566889999999999999999888775 6669999999877766666 67889
Q ss_pred EEEEEecCCc-EEEEEeCCCeEEEEECCCCccccccc-cccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCc
Q 037288 300 LAQQVIHSGN-VVLCGFRNGAIVTVDVRKRQRGCSSR-AGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSI 377 (513)
Q Consensus 300 ~~l~~~~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~~-~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v 377 (513)
.+++|+|++. ++++++.|+.|++||...+.. +. .+.+|.... .
T Consensus 202 ~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~---~~~~~~~~~~~~-~------------------------------- 246 (466)
T COG2319 202 SSLAFSPDGGLLIASGSSDGTIRLWDLSTGKL---LRSTLSGHSDSV-V------------------------------- 246 (466)
T ss_pred EEEEEcCCcceEEEEecCCCcEEEEECCCCcE---EeeecCCCCcce-e-------------------------------
Confidence 9999999997 666669999999998874433 22 234443322 1
Q ss_pred eEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 037288 378 SCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVF 457 (513)
Q Consensus 378 ~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~ 457 (513)
..+++++.++++++.|+.+++||++.... .+..+.+|...+.. +.|+|++..+++++.|+.+.+|++.+.....
T Consensus 247 ---~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~~~~v~~--~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 320 (466)
T COG2319 247 ---SSFSPDGSLLASGSSDGTIRLWDLRSSSS-LLRTLSGHSSSVLS--VAFSPDGKLLASGSSDGTVRLWDLETGKLLS 320 (466)
T ss_pred ---EeECCCCCEEEEecCCCcEEEeeecCCCc-EEEEEecCCccEEE--EEECCCCCEEEEeeCCCcEEEEEcCCCceEE
Confidence 25777888889999999999999973222 24555678777766 7899988888889999999999999888777
Q ss_pred Eec--CCCCCeEEEEEc
Q 037288 458 EDK--FSNSVPSAVCWR 472 (513)
Q Consensus 458 ~~~--~~~~~v~~v~~~ 472 (513)
... .|...+..+.|.
T Consensus 321 ~~~~~~~~~~~~~~~~~ 337 (466)
T COG2319 321 SLTLKGHEGPVSSLSFS 337 (466)
T ss_pred EeeecccCCceEEEEEC
Confidence 765 677778999994
No 192
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=7.9e-13 Score=125.66 Aligned_cols=240 Identities=16% Similarity=0.165 Sum_probs=172.1
Q ss_pred EEeccccCcEEEEEEcCCCCEEEEEeCCe-EEEEECCCCcEEEEee--eCCCeEEEEEecCC--cEEEEEeCCCeEEEEE
Q 037288 250 HLVASFKCTVWTADFCTNPSQAVIGTNLG-AAMVDMETGMASWVCR--SKSDILAQQVIHSG--NVVLCGFRNGAIVTVD 324 (513)
Q Consensus 250 ~~~~~h~~~V~~~~~s~~g~~l~s~s~~~-i~vwd~~~~~~~~~~~--~~~~V~~l~~~~~~--~~l~sg~~dg~i~iwd 324 (513)
..|..|.+.|+.+.|+..|..+++|+|+. |.+||..++.....+. |...|..-.|-|.. ..+++.+.||.|++=.
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~ 215 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE 215 (559)
T ss_pred hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence 44889999999999999999999998876 9999998887665554 77778888898843 6788999999999887
Q ss_pred CCCCccccccccccccCcCeEEEeeCC----eEEEeE-------------------------------------------
Q 037288 325 VRKRQRGCSSRAGRRHRIPYSRLQRND----RVTNEQ------------------------------------------- 357 (513)
Q Consensus 325 ~~~~~~~~~~~~~~~h~~~v~~v~~~~----~~~s~~------------------------------------------- 357 (513)
+.........+.+..|.++|..++..| .+++++
T Consensus 216 i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~ 295 (559)
T KOG1334|consen 216 ILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTN 295 (559)
T ss_pred eccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCcc
Confidence 654433222456677777777766555 333332
Q ss_pred -------------eecccCccc----------ceeEee-cCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCc----
Q 037288 358 -------------WFELKANIW----------PSHTTF-MPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTR---- 409 (513)
Q Consensus 358 -------------w~~~~~~~~----------~~~~~~-~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~---- 409 (513)
|+.+.-+.. +.+... .+-.|+++ .++.++.-|+++-.|-.|+++.-.....
T Consensus 296 ~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl-~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~ 374 (559)
T KOG1334|consen 296 EFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGL-VYSHDGSELLASYNDEDIYLFNKSMGDGSEPD 374 (559)
T ss_pred ccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeE-EecCCccceeeeecccceEEeccccccCCCCC
Confidence 111110000 000000 12245564 6776777777777888999995433222
Q ss_pred ------cceE-EecCCCCceeEEEEEE-cCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEee
Q 037288 410 ------GAVQ-SYEGHVNSHTRIQLGV-DQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQI 481 (513)
Q Consensus 410 ------~~~~-~~~~h~~~v~~~~~~~-s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~ 481 (513)
..+. .|+||.+.-++..+.| -|...|+++|+.-|.|.||+-.+++.+..+.+....|+|+.-+|.-.+||++
T Consensus 375 ~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsS 454 (559)
T KOG1334|consen 375 PSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASS 454 (559)
T ss_pred CCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhcc
Confidence 1223 4899998776655554 6788999999999999999999999999888777799999999999999999
Q ss_pred CCCeeeeec
Q 037288 482 EGKIHEEFD 490 (513)
Q Consensus 482 ~~~~~~~~~ 490 (513)
+-+..-.++
T Consensus 455 Gid~DVKIW 463 (559)
T KOG1334|consen 455 GIDHDVKIW 463 (559)
T ss_pred CCccceeee
Confidence 998874433
No 193
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.41 E-value=1.6e-11 Score=124.36 Aligned_cols=252 Identities=12% Similarity=0.076 Sum_probs=152.4
Q ss_pred eeeeEEeccccCeEEEEEeecccccccceeEEeeeccccccccccccccCCCCCccccCcceeeecccceEEEecCCCCc
Q 037288 122 RTDVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNKTESSKAPEHIWRLNKASILMPSSVSCIKLFGKHPS 201 (513)
Q Consensus 122 ~~~~l~tg~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~s~i~si~~~~~~~~ 201 (513)
..+++++|+.+|.|.+|++..........+.. ..-.+...+..++|-.+.
T Consensus 254 ~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~----------~~~sh~~~v~~vvW~~~~-------------------- 303 (555)
T KOG1587|consen 254 DPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSA----------LEVSHSEPVTAVVWLQNE-------------------- 303 (555)
T ss_pred CcceEEeeccCceEEEEEccCCCCCCCccccc----------ccccCCcCeEEEEEeccC--------------------
Confidence 45799999999999999986554321111111 111122224455553220
Q ss_pred cccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcC-CCCEEEEEeCCe-E
Q 037288 202 CATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCT-NPSQAVIGTNLG-A 279 (513)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~-~g~~l~s~s~~~-i 279 (513)
.+ +-++. ...+|.+..|+++.-.................-..-...+.+++|.+ +...++.|++.+ |
T Consensus 304 ------~~-~~f~s----~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v 372 (555)
T KOG1587|consen 304 ------HN-TEFFS----LSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKV 372 (555)
T ss_pred ------CC-CceEE----EecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEE
Confidence 00 00111 12378888776553222211111111110000112234789999988 556788888877 4
Q ss_pred EE---EECCCCc-----EE-EEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECC-CCccccccccccccCcCeEEEee
Q 037288 280 AM---VDMETGM-----AS-WVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVR-KRQRGCSSRAGRRHRIPYSRLQR 349 (513)
Q Consensus 280 ~v---wd~~~~~-----~~-~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~-~~~~~~~~~~~~~h~~~v~~v~~ 349 (513)
.- ++..... .. ....|.+.|.++.++|=+..++..+.|.+|+||.-. ...+ +..+..+...|++++|
T Consensus 373 ~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~P---l~~~~~~~~~v~~vaW 449 (555)
T KOG1587|consen 373 YKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASP---LLSLDSSPDYVTDVAW 449 (555)
T ss_pred EEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCc---chhhhhccceeeeeEE
Confidence 33 2222222 11 222378899999999977544444449999999876 3333 4466667777888777
Q ss_pred CCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEE
Q 037288 350 NDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGV 429 (513)
Q Consensus 350 ~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~ 429 (513)
+| ...-.|+++..||.|.+||+.....+++.+...+....+. +.|
T Consensus 450 Sp---------------------------------trpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~--~~~ 494 (555)
T KOG1587|consen 450 SP---------------------------------TRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTR--VRW 494 (555)
T ss_pred cC---------------------------------cCceEEEEEcCCCceehhhhhccccCCcccccccccccce--eec
Confidence 65 2345789999999999999985455577777655443333 678
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCC
Q 037288 430 DQSERFVMSGGEDCKLRIWSIRS 452 (513)
Q Consensus 430 s~~g~~l~sg~~Dg~v~vwd~~~ 452 (513)
+++|+.|++|...|++.+|++..
T Consensus 495 s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 495 SPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred CCCCcEEEEecCCCcEEEEEcCc
Confidence 88899999999999999999853
No 194
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.40 E-value=1.7e-11 Score=126.60 Aligned_cols=228 Identities=14% Similarity=0.127 Sum_probs=158.3
Q ss_pred cEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEEee----eCCCeEEEEEec--CCcEEEEEeCCCeEEEEECCCCc-
Q 037288 258 TVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWVCR----SKSDILAQQVIH--SGNVVLCGFRNGAIVTVDVRKRQ- 329 (513)
Q Consensus 258 ~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~~~----~~~~V~~l~~~~--~~~~l~sg~~dg~i~iwd~~~~~- 329 (513)
.-..+.|+|-...++++. ...|++||.+.++...-+. ....|+.+.+-. |..++++|+.||.|+||+--...
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence 456788888777777776 4569999999998877665 234588988864 44799999999999999754332
Q ss_pred -ccc---cccccccc----CcCeEEEeeCC---eE-EEeE------eecccCcccceeEeecCCCceEEEEEcCCCCEEE
Q 037288 330 -RGC---SSRAGRRH----RIPYSRLQRND---RV-TNEQ------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFL 391 (513)
Q Consensus 330 -~~~---~~~~~~~h----~~~v~~v~~~~---~~-~s~~------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 391 (513)
... ....+.++ .+.=.-++|.. .+ ++|. ||.................++.+......|+.++
T Consensus 1146 ~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~ 1225 (1387)
T KOG1517|consen 1146 KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIA 1225 (1387)
T ss_pred CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEE
Confidence 111 11122222 11113345554 33 3442 9988776554444455556677666666789999
Q ss_pred EEecCCeEEEEecCCCCcc-ceEEecCCCCceeEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeEEEE--ecCC---CC
Q 037288 392 ASSMDGTVKLYDHRLTTRG-AVQSYEGHVNSHTRIQLGVDQSER-FVMSGGEDCKLRIWSIRSGELVFE--DKFS---NS 464 (513)
Q Consensus 392 s~s~dg~i~lwd~~~~~~~-~~~~~~~h~~~v~~~~~~~s~~g~-~l~sg~~Dg~v~vwd~~~~~~~~~--~~~~---~~ 464 (513)
+|..||.|++||.|..... .+..++.|...-..+.+.+.+.|- .|++|+.||.|++||++....... ...| ++
T Consensus 1226 AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs 1305 (1387)
T KOG1517|consen 1226 AGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGS 1305 (1387)
T ss_pred EeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCc
Confidence 9999999999999976554 788889998873334466766553 599999999999999998422221 2222 34
Q ss_pred CeEEEEEcCCCceEEeeCCCe
Q 037288 465 VPSAVCWRTQRSMGPQIEGKI 485 (513)
Q Consensus 465 ~v~~v~~~p~~~~~~t~~~~~ 485 (513)
..+++..|+...++|+++...
T Consensus 1306 ~lTal~VH~hapiiAsGs~q~ 1326 (1387)
T KOG1517|consen 1306 ALTALTVHEHAPIIASGSAQL 1326 (1387)
T ss_pred cceeeeeccCCCeeeecCcce
Confidence 599999999999999988643
No 195
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.39 E-value=9.4e-12 Score=112.64 Aligned_cols=188 Identities=12% Similarity=0.068 Sum_probs=145.1
Q ss_pred eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCc-cccccccccccCcCeEEEeeCC---eEEEeE-------eec-cc
Q 037288 295 SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQ-RGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFE-LK 362 (513)
Q Consensus 295 ~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~-~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~-~~ 362 (513)
...+|+|.+|++|+..++.+..+..|.||.....+ ... ..++..|...|+.|+|+| +|++++ |.. ..
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~-~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEP-AHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCcee-ceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCC
Confidence 45679999999999999999999999999988877 444 779999999999999999 899998 777 44
Q ss_pred CcccceeEe-ecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccce-E-EecCCCCceeEEEEEEcCCCCEEEEE
Q 037288 363 ANIWPSHTT-FMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAV-Q-SYEGHVNSHTRIQLGVDQSERFVMSG 439 (513)
Q Consensus 363 ~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~-~-~~~~h~~~v~~~~~~~s~~g~~l~sg 439 (513)
+..++...+ ++...++++ .++|.++.||+|+....|.+|-+.....--+ + .-+.+...|++ ++|+|++-+|++|
T Consensus 88 ~~WkptlvLlRiNrAAt~V-~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~s--ldWhpnnVLlaaG 164 (361)
T KOG1523|consen 88 GTWKPTLVLLRINRAATCV-KWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTS--LDWHPNNVLLAAG 164 (361)
T ss_pred CeeccceeEEEeccceeeE-eecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceee--eeccCCcceeccc
Confidence 555555544 456666665 7899999999999999999998852111111 1 22334555555 9999999999999
Q ss_pred eCCCcEEEEeCC------------------CCeEEEEecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288 440 GEDCKLRIWSIR------------------SGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIH 486 (513)
Q Consensus 440 ~~Dg~v~vwd~~------------------~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~ 486 (513)
+.|+..+||+.- -|+++.++....+.+..+.|+|++..++=.+.|-.
T Consensus 165 s~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~ 229 (361)
T KOG1523|consen 165 STDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDST 229 (361)
T ss_pred ccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCc
Confidence 999999999742 23455555556788999999999877766665544
No 196
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.39 E-value=5.7e-10 Score=109.59 Aligned_cols=248 Identities=8% Similarity=0.044 Sum_probs=148.0
Q ss_pred CCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEe--CCeEEEEECC-CCcE--EEEeeeC
Q 037288 222 TGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGT--NLGAAMVDME-TGMA--SWVCRSK 296 (513)
Q Consensus 222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s--~~~i~vwd~~-~~~~--~~~~~~~ 296 (513)
.++.+.+|++.+.... . .+..+ .+.+....++++|++++|++++ ++.|.+|++. ++.. .......
T Consensus 10 ~~~~I~~~~~~~~g~l-~--------~~~~~-~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~ 79 (330)
T PRK11028 10 ESQQIHVWNLNHEGAL-T--------LLQVV-DVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLP 79 (330)
T ss_pred CCCCEEEEEECCCCce-e--------eeeEE-ecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCC
Confidence 4577788877522110 0 11222 2335567889999999887663 4569999986 3443 2222233
Q ss_pred CCeEEEEEecCCcEEEEEeC-CCeEEEEECCCCccc-cccccccccCcCeEEEeeCC---eEEEeE--------eeccc-
Q 037288 297 SDILAQQVIHSGNVVLCGFR-NGAIVTVDVRKRQRG-CSSRAGRRHRIPYSRLQRND---RVTNEQ--------WFELK- 362 (513)
Q Consensus 297 ~~V~~l~~~~~~~~l~sg~~-dg~i~iwd~~~~~~~-~~~~~~~~h~~~v~~v~~~~---~~~s~~--------w~~~~- 362 (513)
.....++|+|+++.|++++. ++.|.+||+.+.... ..+..+. +......++++| .+++.. |+...
T Consensus 80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~ 158 (330)
T PRK11028 80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDD 158 (330)
T ss_pred CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCC
Confidence 45778999999998888765 899999999743221 1012222 223456677887 443433 77654
Q ss_pred Ccccce----eEeecCCCceEEEEEcCCCCEEEEEec-CCeEEEEecCCCCc--cceEEecCCC----CceeEEEEEEcC
Q 037288 363 ANIWPS----HTTFMPSSISCLQSLQLYDQYFLASSM-DGTVKLYDHRLTTR--GAVQSYEGHV----NSHTRIQLGVDQ 431 (513)
Q Consensus 363 ~~~~~~----~~~~~~~~v~~~~~~~~~~~~l~s~s~-dg~i~lwd~~~~~~--~~~~~~~~h~----~~v~~~~~~~s~ 431 (513)
+.+.+. ........... +.++|++++++++.. ++.|.+||+..... ..+.++..+. .......+.++|
T Consensus 159 g~l~~~~~~~~~~~~g~~p~~-~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p 237 (330)
T PRK11028 159 GHLVAQEPAEVTTVEGAGPRH-MVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP 237 (330)
T ss_pred CcccccCCCceecCCCCCCce-EEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC
Confidence 222210 11112233344 478899999988876 89999999962111 1333433221 111223478899
Q ss_pred CCCEEEEEeC-CCcEEEEeCCCCe----EEEEecCCCCCeEEEEEcCCCce-EEeeC
Q 037288 432 SERFVMSGGE-DCKLRIWSIRSGE----LVFEDKFSNSVPSAVCWRTQRSM-GPQIE 482 (513)
Q Consensus 432 ~g~~l~sg~~-Dg~v~vwd~~~~~----~~~~~~~~~~~v~~v~~~p~~~~-~~t~~ 482 (513)
+|++|+++.. ++.|.+|++.... .+..... ......++++|++.. +++..
T Consensus 238 dg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~ 293 (330)
T PRK11028 238 DGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQ 293 (330)
T ss_pred CCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEc
Confidence 9999998865 7899999986432 2232222 234568999999654 44443
No 197
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.39 E-value=4.8e-11 Score=121.05 Aligned_cols=225 Identities=15% Similarity=0.150 Sum_probs=147.4
Q ss_pred ccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcC-CCCEEEEEe-CCeEEEEECCCCcE--E-----EEee
Q 037288 224 GSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCT-NPSQAVIGT-NLGAAMVDMETGMA--S-----WVCR 294 (513)
Q Consensus 224 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~-~g~~l~s~s-~~~i~vwd~~~~~~--~-----~~~~ 294 (513)
+.+.+|++.++... .....-...|.|+.|+| +..+++.|. +|+|.+||+..+.. . ....
T Consensus 222 ~~~~vW~~~~p~~P------------e~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~s 289 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTP------------ELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVS 289 (555)
T ss_pred ceEEEEecCCCCCc------------eEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCccccccccc
Confidence 36777888765222 11333447899999999 566777774 56699999987653 1 1223
Q ss_pred eCCCeEEEEEecCC--cEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEee
Q 037288 295 SKSDILAQQVIHSG--NVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTF 372 (513)
Q Consensus 295 ~~~~V~~l~~~~~~--~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~ 372 (513)
|..+|+.+.|..+. .-+++++.||.|..|+++.-........+..+.. ......
T Consensus 290 h~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~------------------------~~~~~~ 345 (555)
T KOG1587|consen 290 HSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKH------------------------KGQQSS 345 (555)
T ss_pred CCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccc------------------------cccccc
Confidence 77889999998755 4499999999999998876543110000000000 000111
Q ss_pred cCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccc------eEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEE
Q 037288 373 MPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGA------VQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLR 446 (513)
Q Consensus 373 ~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~------~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~ 446 (513)
....++++.+...+.+.|++|+.+|.|.--+-....... ...+..|.+.|+. +.++|-+..++..+.|.+|+
T Consensus 346 ~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~--v~~nPF~~k~fls~gDW~vr 423 (555)
T KOG1587|consen 346 KAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYA--VSRNPFYPKNFLSVGDWTVR 423 (555)
T ss_pred cccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEe--eecCCCccceeeeeccceeE
Confidence 223445555555677889999999998874322111112 3456677888877 88888665444444499999
Q ss_pred EEeCC-CCeEEEEecCCCCCeEEEEEcCC-CceEEeeCCCee
Q 037288 447 IWSIR-SGELVFEDKFSNSVPSAVCWRTQ-RSMGPQIEGKIH 486 (513)
Q Consensus 447 vwd~~-~~~~~~~~~~~~~~v~~v~~~p~-~~~~~t~~~~~~ 486 (513)
||+.. ...++..+..+...|++++|+|. ..+|++...+-.
T Consensus 424 iWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~ 465 (555)
T KOG1587|consen 424 IWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGN 465 (555)
T ss_pred eccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCc
Confidence 99988 77888888887778999999999 567777664433
No 198
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.38 E-value=2.5e-11 Score=123.49 Aligned_cols=226 Identities=13% Similarity=0.082 Sum_probs=153.9
Q ss_pred cEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEee-eCCCeEEEEEecCC---cEEEEEeCCCeEEEEECCCCccccc
Q 037288 258 TVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCR-SKSDILAQQVIHSG---NVVLCGFRNGAIVTVDVRKRQRGCS 333 (513)
Q Consensus 258 ~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~---~~l~sg~~dg~i~iwd~~~~~~~~~ 333 (513)
.-..-.|++|+++++...+..|.||...|+.++..+. |..+++++.+.|.. .++++++.||.|++||...+....+
T Consensus 18 ~~~~avfSnD~k~l~~~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt 97 (792)
T KOG1963|consen 18 NKSPAVFSNDAKFLFLCTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKT 97 (792)
T ss_pred eecccccccCCcEEEEeeCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEE
Confidence 3344578899999999999999999999999888776 78889999998855 4677999999999999987765331
Q ss_pred cc-ccccc-------CcCeEEEeeCC----eEEE-eE-------------------------------------------
Q 037288 334 SR-AGRRH-------RIPYSRLQRND----RVTN-EQ------------------------------------------- 357 (513)
Q Consensus 334 ~~-~~~~h-------~~~v~~v~~~~----~~~s-~~------------------------------------------- 357 (513)
+. .+.-| ........+.. .+++ .+
T Consensus 98 ~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i 177 (792)
T KOG1963|consen 98 FDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGI 177 (792)
T ss_pred EecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEE
Confidence 00 00001 00000000000 0000 00
Q ss_pred --------eecccCccc--ceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCC--CCccceEEecCCCCceeEE
Q 037288 358 --------WFELKANIW--PSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRL--TTRGAVQSYEGHVNSHTRI 425 (513)
Q Consensus 358 --------w~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~--~~~~~~~~~~~h~~~v~~~ 425 (513)
|+....... ....-.++.-...+..++|+++++|+|..||.|.+|.-.. ........+.-|.++|.+
T Consensus 178 ~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~- 256 (792)
T KOG1963|consen 178 VHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNS- 256 (792)
T ss_pred EEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccce-
Confidence 333221100 0000011111133458999999999999999999996432 112266778899999988
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288 426 QLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIH 486 (513)
Q Consensus 426 ~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~ 486 (513)
++|+++|.+|++||..|.+-+|.+.+++ -+-+..-+++|..+.++|++..++..-.|..
T Consensus 257 -L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNq 315 (792)
T KOG1963|consen 257 -LSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQ 315 (792)
T ss_pred -eEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCce
Confidence 8999999999999999999999999999 3345556889999999999766655555544
No 199
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=2.6e-10 Score=115.60 Aligned_cols=209 Identities=11% Similarity=0.064 Sum_probs=138.2
Q ss_pred eccccCcEEEEEEcCCCCEEEEEe----CCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEE-eCCC--eEEEEE
Q 037288 252 VASFKCTVWTADFCTNPSQAVIGT----NLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCG-FRNG--AIVTVD 324 (513)
Q Consensus 252 ~~~h~~~V~~~~~s~~g~~l~s~s----~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg-~~dg--~i~iwd 324 (513)
+..+...+...+|+|||+.|+..+ +..+.+||+.+++...+......+.+++|+|||+.|+.. +.+| .|++||
T Consensus 194 lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d 273 (429)
T PRK03629 194 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMD 273 (429)
T ss_pred eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEE
Confidence 445667899999999999888653 234899999998766555555556788999999866644 4455 588999
Q ss_pred CCCCccccccccccccCcCeEEEeeCC---eEEEeE--------ee--cccCcccceeEeecCCCceEEEEEcCCCCEEE
Q 037288 325 VRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ--------WF--ELKANIWPSHTTFMPSSISCLQSLQLYDQYFL 391 (513)
Q Consensus 325 ~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~--------w~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 391 (513)
+.++.. ..+..+...+....|+| .++..+ |. ...+.. ..+...........++|+|++|+
T Consensus 274 ~~tg~~----~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~---~~lt~~~~~~~~~~~SpDG~~Ia 346 (429)
T PRK03629 274 LASGQI----RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP---QRITWEGSQNQDADVSSDGKFMV 346 (429)
T ss_pred CCCCCE----EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe---EEeecCCCCccCEEECCCCCEEE
Confidence 987653 34444555677889998 344333 22 222221 12222222222357899999998
Q ss_pred EEecC---CeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCc---EEEEeCCCCeEEEEecCCCCC
Q 037288 392 ASSMD---GTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCK---LRIWSIRSGELVFEDKFSNSV 465 (513)
Q Consensus 392 s~s~d---g~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~---v~vwd~~~~~~~~~~~~~~~~ 465 (513)
..+.+ ..|.+||+. .+....+.... .. ....|+|||++|+.++.++. +.++++ +|.....+..+.+.
T Consensus 347 ~~~~~~g~~~I~~~dl~---~g~~~~Lt~~~-~~--~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~ 419 (429)
T PRK03629 347 MVSSNGGQQHIAKQDLA---TGGVQVLTDTF-LD--ETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQ 419 (429)
T ss_pred EEEccCCCceEEEEECC---CCCeEEeCCCC-CC--CCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCC
Confidence 76653 358888985 33344443221 11 23679999999999888765 677777 45556667777778
Q ss_pred eEEEEEcCC
Q 037288 466 PSAVCWRTQ 474 (513)
Q Consensus 466 v~~v~~~p~ 474 (513)
+...+|+|-
T Consensus 420 ~~~p~Wsp~ 428 (429)
T PRK03629 420 VKFPAWSPY 428 (429)
T ss_pred cCCcccCCC
Confidence 889999984
No 200
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.38 E-value=3.5e-11 Score=111.06 Aligned_cols=158 Identities=10% Similarity=0.134 Sum_probs=126.4
Q ss_pred cCcEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEee----eCCCeEEEEEecCCcEEEEE--eCCCeEEEEECCCCc
Q 037288 256 KCTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCR----SKSDILAQQVIHSGNVVLCG--FRNGAIVTVDVRKRQ 329 (513)
Q Consensus 256 ~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~----~~~~V~~l~~~~~~~~l~sg--~~dg~i~iwd~~~~~ 329 (513)
...|.++.++ -+.|+++-.+.|.|||+.+.+.+.++. +...+.++++++.+.+++-- ...|.|.+||..+-+
T Consensus 87 pt~IL~VrmN--r~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~ 164 (391)
T KOG2110|consen 87 PTSILAVRMN--RKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQ 164 (391)
T ss_pred CCceEEEEEc--cceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccce
Confidence 4578888874 457777777779999999999887776 33447777777777677643 236999999999887
Q ss_pred cccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCe-EEEEecCCCC
Q 037288 330 RGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGT-VKLYDHRLTT 408 (513)
Q Consensus 330 ~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~-i~lwd~~~~~ 408 (513)
.. ..+.+|.+++.++ +|+++|.+|||++..|+ ||++.+. +
T Consensus 165 ~v---~~I~aH~~~lAal----------------------------------afs~~G~llATASeKGTVIRVf~v~--~ 205 (391)
T KOG2110|consen 165 PV---NTINAHKGPLAAL----------------------------------AFSPDGTLLATASEKGTVIRVFSVP--E 205 (391)
T ss_pred ee---eEEEecCCceeEE----------------------------------EECCCCCEEEEeccCceEEEEEEcC--C
Confidence 64 4777888888885 45669999999999888 6899996 5
Q ss_pred ccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe
Q 037288 409 RGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGE 454 (513)
Q Consensus 409 ~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~ 454 (513)
...+..|+.....+...+++|+|++.+|++.|..++|+||.+....
T Consensus 206 G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 206 GQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred ccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 5588888877768888889999999999999999999999987543
No 201
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.38 E-value=8.2e-11 Score=105.28 Aligned_cols=152 Identities=13% Similarity=0.243 Sum_probs=101.5
Q ss_pred EEEEEcCCCCEEEEEeC-----------CeEEEEEC--CCCcEEEEe--eeCCCeEEEEEecCCcEEEE--EeCCCeEEE
Q 037288 260 WTADFCTNPSQAVIGTN-----------LGAAMVDM--ETGMASWVC--RSKSDILAQQVIHSGNVVLC--GFRNGAIVT 322 (513)
Q Consensus 260 ~~~~~s~~g~~l~s~s~-----------~~i~vwd~--~~~~~~~~~--~~~~~V~~l~~~~~~~~l~s--g~~dg~i~i 322 (513)
..+.|+++|.+|+.-.+ +...+|-+ ... ....+ ...++|.+++|+|+|+.|++ |..+..|.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~-~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNI-PVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCC-ccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 46889999987774322 12334444 332 22333 34556999999999987544 456789999
Q ss_pred EECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecC---CeE
Q 037288 323 VDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMD---GTV 399 (513)
Q Consensus 323 wd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~d---g~i 399 (513)
||++... +..+. ...+ .. +.|+|+|++|++++.+ |.|
T Consensus 88 yd~~~~~----i~~~~--~~~~---------------------------------n~-i~wsP~G~~l~~~g~~n~~G~l 127 (194)
T PF08662_consen 88 YDVKGKK----IFSFG--TQPR---------------------------------NT-ISWSPDGRFLVLAGFGNLNGDL 127 (194)
T ss_pred EcCcccE----eEeec--CCCc---------------------------------eE-EEECCCCCEEEEEEccCCCcEE
Confidence 9997222 11111 1222 22 4788899999998754 679
Q ss_pred EEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeC------CCcEEEEeCCCCeEEEEe
Q 037288 400 KLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGE------DCKLRIWSIRSGELVFED 459 (513)
Q Consensus 400 ~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~------Dg~v~vwd~~~~~~~~~~ 459 (513)
.+||.+ +...+.+++ |.. + ..++|+|+|++|+++.. |+.++||+. +|+++...
T Consensus 128 ~~wd~~--~~~~i~~~~-~~~-~--t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~~ 186 (194)
T PF08662_consen 128 EFWDVR--KKKKISTFE-HSD-A--TDVEWSPDGRYLATATTSPRLRVDNGFKIWSF-QGRLLYKK 186 (194)
T ss_pred EEEECC--CCEEeeccc-cCc-E--EEEEEcCCCCEEEEEEeccceeccccEEEEEe-cCeEeEec
Confidence 999997 555666655 433 3 34899999999998864 788999998 56666654
No 202
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=1e-11 Score=116.48 Aligned_cols=165 Identities=17% Similarity=0.156 Sum_probs=116.9
Q ss_pred eccccCcEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEee---eCCCeEEEEEecCC-----cEEEEEeCCCeEEEE
Q 037288 252 VASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCR---SKSDILAQQVIHSG-----NVVLCGFRNGAIVTV 323 (513)
Q Consensus 252 ~~~h~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~---~~~~V~~l~~~~~~-----~~l~sg~~dg~i~iw 323 (513)
...|...|.+++|+|||++|++-+.+..+||+++++..+.... .+.....+.|+.|+ .+++....-+.|..|
T Consensus 182 e~~~~~eV~DL~FS~dgk~lasig~d~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~ 261 (398)
T KOG0771|consen 182 EIAHHAEVKDLDFSPDGKFLASIGADSARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLC 261 (398)
T ss_pred hHhhcCccccceeCCCCcEEEEecCCceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEE
Confidence 4567789999999999999997766699999999996544333 22336778888777 334444455777777
Q ss_pred ECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEe
Q 037288 324 DVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYD 403 (513)
Q Consensus 324 d~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd 403 (513)
|+...+... + +.....+.....+.++ ..+.+|++++.|+.||.|-|++
T Consensus 262 ~~~~w~~~~-~------------------------------l~~~~~~~~~~siSsl-~VS~dGkf~AlGT~dGsVai~~ 309 (398)
T KOG0771|consen 262 DISLWSGSN-F------------------------------LRLRKKIKRFKSISSL-AVSDDGKFLALGTMDGSVAIYD 309 (398)
T ss_pred Eeeeecccc-c------------------------------cchhhhhhccCcceeE-EEcCCCcEEEEeccCCcEEEEE
Confidence 775443311 0 0011122223345554 7788999999999999999999
Q ss_pred cCCCCccceE-EecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 037288 404 HRLTTRGAVQ-SYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRS 452 (513)
Q Consensus 404 ~~~~~~~~~~-~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~ 452 (513)
.. +-+.++ .-+.|...|+. +.|+||.+++++.+.|....|..+.-
T Consensus 310 ~~--~lq~~~~vk~aH~~~VT~--ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 310 AK--SLQRLQYVKEAHLGFVTG--LTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred ec--eeeeeEeehhhheeeeee--EEEcCCcCcccccccCCceeEEEEee
Confidence 86 333333 23578888877 99999999999999999888887654
No 203
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.35 E-value=7.5e-11 Score=114.53 Aligned_cols=192 Identities=14% Similarity=0.165 Sum_probs=135.2
Q ss_pred EEEEEcC-CCCEEEEEeCCeEEEEECCCCcEEEEeeeC-CCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccc
Q 037288 260 WTADFCT-NPSQAVIGTNLGAAMVDMETGMASWVCRSK-SDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAG 337 (513)
Q Consensus 260 ~~~~~s~-~g~~l~s~s~~~i~vwd~~~~~~~~~~~~~-~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~ 337 (513)
.+++++. +-.+++.|+...|.=++++.|+-+.-+... +.+++|..++-..+|++|+.||.|..||.|...... .+
T Consensus 137 RDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~---~l 213 (703)
T KOG2321|consen 137 RDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVG---TL 213 (703)
T ss_pred ccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhhe---ee
Confidence 3455543 445666667677888999999877777755 669999999999999999999999999999876533 22
Q ss_pred cccCcCeEEEeeCCeEEEeEeecccCcccceeEee-cCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEec
Q 037288 338 RRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTF-MPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYE 416 (513)
Q Consensus 338 ~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~ 416 (513)
..... |.+ .... ....|++ ..|+.+|-.+++|+.+|.|.|||+| ...++. ..
T Consensus 214 ~~~~~-v~s----------------------~pg~~~~~svTa-l~F~d~gL~~aVGts~G~v~iyDLR--a~~pl~-~k 266 (703)
T KOG2321|consen 214 DAASS-VNS----------------------HPGGDAAPSVTA-LKFRDDGLHVAVGTSTGSVLIYDLR--ASKPLL-VK 266 (703)
T ss_pred ecccc-cCC----------------------CccccccCcceE-EEecCCceeEEeeccCCcEEEEEcc--cCCcee-ec
Confidence 21111 111 0000 0112444 3677779999999999999999999 555554 34
Q ss_pred CCCCceeEEEEEEcCC--CCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCC-ceEEeeCC
Q 037288 417 GHVNSHTRIQLGVDQS--ERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQR-SMGPQIEG 483 (513)
Q Consensus 417 ~h~~~v~~~~~~~s~~--g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~-~~~~t~~~ 483 (513)
.|...+....+.|.+. ++.|++ .....++|||-.+|+....+.. ...++.+|+-|+. .+|...+.
T Consensus 267 dh~~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p~sGm~f~Ane~ 334 (703)
T KOG2321|consen 267 DHGYELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKPMASIEP-TSDLNDFCFVPGSGMFFTANES 334 (703)
T ss_pred ccCCccceeeecccccCCCceEEe-cchHHhhhcccccCCceeeccc-cCCcCceeeecCCceEEEecCC
Confidence 5877777777888665 344554 3457899999999999888765 4559999999994 44444443
No 204
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.34 E-value=1.7e-11 Score=117.87 Aligned_cols=189 Identities=12% Similarity=0.128 Sum_probs=132.3
Q ss_pred cccCcEEEEEEcCCCCEEEEEeCCeEEEE-ECCCC---------------------------------------c-----
Q 037288 254 SFKCTVWTADFCTNPSQAVIGTNLGAAMV-DMETG---------------------------------------M----- 288 (513)
Q Consensus 254 ~h~~~V~~~~~s~~g~~l~s~s~~~i~vw-d~~~~---------------------------------------~----- 288 (513)
.|...|.|+.|+.+...+.++.|..+.+| |+.+. +
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~ 91 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN 91 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec
Confidence 45567778888888777777777776555 33221 0
Q ss_pred ----EEEE-eeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccC
Q 037288 289 ----ASWV-CRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKA 363 (513)
Q Consensus 289 ----~~~~-~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~ 363 (513)
.... -.|.+.+.|-.|+|||.-|++++.||.|++|.-...-. .++.....+|.|++|
T Consensus 92 k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLR----Stl~Q~~~~v~c~~W-------------- 153 (737)
T KOG1524|consen 92 KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLR----STVVQNEESIRCARW-------------- 153 (737)
T ss_pred ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHH----HHHhhcCceeEEEEE--------------
Confidence 0000 01556788999999999999999999999997543311 133444556666544
Q ss_pred cccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCC
Q 037288 364 NIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDC 443 (513)
Q Consensus 364 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg 443 (513)
.|+.+-++.+.. +.+.|=.+. ....+..+++|.+-|.+ ++|++..+++++||+|.
T Consensus 154 --------------------~p~S~~vl~c~g-~h~~IKpL~--~n~k~i~WkAHDGiiL~--~~W~~~s~lI~sgGED~ 208 (737)
T KOG1524|consen 154 --------------------APNSNSIVFCQG-GHISIKPLA--ANSKIIRWRAHDGLVLS--LSWSTQSNIIASGGEDF 208 (737)
T ss_pred --------------------CCCCCceEEecC-CeEEEeecc--cccceeEEeccCcEEEE--eecCccccceeecCCce
Confidence 445555554433 455555554 23356678899998755 99999999999999999
Q ss_pred cEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288 444 KLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIH 486 (513)
Q Consensus 444 ~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~ 486 (513)
..+|||- .|..++.-..|+.+|++++|+|+..+++.+-....
T Consensus 209 kfKvWD~-~G~~Lf~S~~~ey~ITSva~npd~~~~v~S~nt~R 250 (737)
T KOG1524|consen 209 RFKIWDA-QGANLFTSAAEEYAITSVAFNPEKDYLLWSYNTAR 250 (737)
T ss_pred eEEeecc-cCcccccCChhccceeeeeeccccceeeeeeeeee
Confidence 9999994 67778888889999999999999666665544433
No 205
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.33 E-value=6.2e-09 Score=102.27 Aligned_cols=191 Identities=9% Similarity=0.120 Sum_probs=117.2
Q ss_pred cEEEEEEcCCCCEEEEEe--CCeEEEEECCC-Cc---EEEEeeeCCCeEEEEEecCCcEEEEE-eCCCeEEEEECCCCcc
Q 037288 258 TVWTADFCTNPSQAVIGT--NLGAAMVDMET-GM---ASWVCRSKSDILAQQVIHSGNVVLCG-FRNGAIVTVDVRKRQR 330 (513)
Q Consensus 258 ~V~~~~~s~~g~~l~s~s--~~~i~vwd~~~-~~---~~~~~~~~~~V~~l~~~~~~~~l~sg-~~dg~i~iwd~~~~~~ 330 (513)
....++++|++++++++. ++.|.+|++.+ +. .+....+.....+++++|++++++++ ..++.|.+||+.....
T Consensus 81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~ 160 (330)
T PRK11028 81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGH 160 (330)
T ss_pred CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCc
Confidence 456899999999888764 56699999974 32 23333344457888999999877555 4579999999976332
Q ss_pred ccc----cccccccCcCeEEEeeCC---eEEEeE--------eeccc--CcccceeEee-cCC-----CceEEEEEcCCC
Q 037288 331 GCS----SRAGRRHRIPYSRLQRND---RVTNEQ--------WFELK--ANIWPSHTTF-MPS-----SISCLQSLQLYD 387 (513)
Q Consensus 331 ~~~----~~~~~~h~~~v~~v~~~~---~~~s~~--------w~~~~--~~~~~~~~~~-~~~-----~v~~~~~~~~~~ 387 (513)
... ...... ......+.|+| .+++.. |+... +.+.....+. .+. ....-..++|++
T Consensus 161 l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg 239 (330)
T PRK11028 161 LVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDG 239 (330)
T ss_pred ccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCC
Confidence 110 001111 23356788888 333332 66653 2322222221 111 111124678999
Q ss_pred CEEEEEec-CCeEEEEecCCCCccceEEecCCCCc-eeEEEEEEcCCCCEEEEEeC-CCcEEEEeCC
Q 037288 388 QYFLASSM-DGTVKLYDHRLTTRGAVQSYEGHVNS-HTRIQLGVDQSERFVMSGGE-DCKLRIWSIR 451 (513)
Q Consensus 388 ~~l~s~s~-dg~i~lwd~~~~~~~~~~~~~~h~~~-v~~~~~~~s~~g~~l~sg~~-Dg~v~vwd~~ 451 (513)
++++++.. ++.|.+|++. ......++.++... .....+.++|+|++|++++. +++|.+|++.
T Consensus 240 ~~lyv~~~~~~~I~v~~i~--~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 240 RHLYACDRTASLISVFSVS--EDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CEEEEecCCCCeEEEEEEe--CCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 99998864 7899999986 33222222222110 01123789999999998776 8999999874
No 206
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.33 E-value=1.3e-09 Score=109.66 Aligned_cols=223 Identities=17% Similarity=0.236 Sum_probs=164.4
Q ss_pred EeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCc-EEEEeee-CC-CeEEEEE-ecCCc-EEEEEeC-CCeEEEE
Q 037288 251 LVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGM-ASWVCRS-KS-DILAQQV-IHSGN-VVLCGFR-NGAIVTV 323 (513)
Q Consensus 251 ~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~-~~~~~~~-~~-~V~~l~~-~~~~~-~l~sg~~-dg~i~iw 323 (513)
....|...+.++.+.+.+..++.++ ++.+.+|+...+. ....+.. .. .+..+.+ ++++. .++..+. |+.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 3678999999999999999888775 6779999999886 4444443 32 6777777 77776 5555444 9999999
Q ss_pred ECCC-CccccccccccccCcCeEEEeeCC---eEEEeE--------eecccCcccceeEee-cCCCceEEEEEcCCCC-E
Q 037288 324 DVRK-RQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ--------WFELKANIWPSHTTF-MPSSISCLQSLQLYDQ-Y 389 (513)
Q Consensus 324 d~~~-~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~--------w~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~-~ 389 (513)
|+.. ... ...+..|...|..+.|++ .++.+. |+...+. ....+. +...+.++ .++|++. .
T Consensus 140 ~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~-~~~~~~~~~ 213 (466)
T COG2319 140 DLSTPGKL---IRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK--PLSTLAGHTDPVSSL-AFSPDGGLL 213 (466)
T ss_pred EecCCCeE---EEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc--eEEeeccCCCceEEE-EEcCCcceE
Confidence 9987 333 457899999999999999 233332 6665522 223333 34455665 5668887 5
Q ss_pred EEEEecCCeEEEEecCCCCccceE-EecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE-EEEecCCCCCeE
Q 037288 390 FLASSMDGTVKLYDHRLTTRGAVQ-SYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGEL-VFEDKFSNSVPS 467 (513)
Q Consensus 390 l~s~s~dg~i~lwd~~~~~~~~~~-~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~-~~~~~~~~~~v~ 467 (513)
+++++.|+.|++||.. ....+. .+.+|.... . ..|++++.++++++.|+.+++|++..... +..+..|...+.
T Consensus 214 ~~~~~~d~~i~~wd~~--~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~ 288 (466)
T COG2319 214 IASGSSDGTIRLWDLS--TGKLLRSTLSGHSDSV-V--SSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVL 288 (466)
T ss_pred EEEecCCCcEEEEECC--CCcEEeeecCCCCcce-e--EeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEE
Confidence 5555899999999886 344555 688888775 4 37899998999999999999999987664 444556788899
Q ss_pred EEEEcCCCceEEeeCCC
Q 037288 468 AVCWRTQRSMGPQIEGK 484 (513)
Q Consensus 468 ~v~~~p~~~~~~t~~~~ 484 (513)
++.|.|+...+++.+.+
T Consensus 289 ~~~~~~~~~~~~~~~~d 305 (466)
T COG2319 289 SVAFSPDGKLLASGSSD 305 (466)
T ss_pred EEEECCCCCEEEEeeCC
Confidence 99999976666655555
No 207
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=2.4e-10 Score=115.96 Aligned_cols=183 Identities=11% Similarity=0.030 Sum_probs=119.3
Q ss_pred eccccCcEEEEEEcCCCCEEEEEeC----CeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEE-EEeCCCeEEEEECC
Q 037288 252 VASFKCTVWTADFCTNPSQAVIGTN----LGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVL-CGFRNGAIVTVDVR 326 (513)
Q Consensus 252 ~~~h~~~V~~~~~s~~g~~l~s~s~----~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~-sg~~dg~i~iwd~~ 326 (513)
+..+...+.+.+|+|||+.|+..++ ..|.+||+.+++...+......+.+.+|+|||+.|+ +.+.+|...+|.++
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d 270 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVN 270 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEE
Confidence 4567788999999999999887653 238999999998766555556678899999997665 56778876666543
Q ss_pred --CCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEec-CCeEEEEe
Q 037288 327 --KRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSM-DGTVKLYD 403 (513)
Q Consensus 327 --~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~-dg~i~lwd 403 (513)
.+. ...+..+...... ..|+|+|+.|+..+. +|...+|.
T Consensus 271 ~~~~~----~~~lt~~~~~~~~----------------------------------~~wSpDG~~l~f~s~~~g~~~Iy~ 312 (427)
T PRK02889 271 ADGSG----LRRLTQSSGIDTE----------------------------------PFFSPDGRSIYFTSDRGGAPQIYR 312 (427)
T ss_pred CCCCC----cEECCCCCCCCcC----------------------------------eEEcCCCCEEEEEecCCCCcEEEE
Confidence 332 1122222211111 357889998886654 56777776
Q ss_pred cCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCC---cEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCce
Q 037288 404 HRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDC---KLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSM 477 (513)
Q Consensus 404 ~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg---~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~ 477 (513)
+.... +....+..+.... ....|+|||++|+..+.++ .|.+||+.+++... +.. ........|+|++.+
T Consensus 313 ~~~~~-g~~~~lt~~g~~~--~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~-~~~~~~p~~spdg~~ 384 (427)
T PRK02889 313 MPASG-GAAQRVTFTGSYN--TSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTD-TTRDESPSFAPNGRY 384 (427)
T ss_pred EECCC-CceEEEecCCCCc--CceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccC-CCCccCceECCCCCE
Confidence 64212 2222222121212 2368999999998777654 69999999887543 332 233467899999643
No 208
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.32 E-value=2.2e-12 Score=121.99 Aligned_cols=188 Identities=14% Similarity=0.157 Sum_probs=151.2
Q ss_pred cCcEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccc
Q 037288 256 KCTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSR 335 (513)
Q Consensus 256 ~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~ 335 (513)
...|.++.|-.+.+++|++...-+.|||-. |..+..+.....|..+.|-|..-+|++++..|.++--|+..++.+.
T Consensus 170 ~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~-GtElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa--- 245 (545)
T KOG1272|consen 170 METVRDVTFLHNEQFFAVAQKKYVYVYDNN-GTELHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVA--- 245 (545)
T ss_pred hhhhhhhhhhcchHHHHhhhhceEEEecCC-CcEEeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhH---
Confidence 368999999999999999988889999975 6777778888899999999999999999999999999999998644
Q ss_pred cccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEe
Q 037288 336 AGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSY 415 (513)
Q Consensus 336 ~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~ 415 (513)
.+..-.+.+.. +.-.|-.-.+-+|...|+|.+|... ...++..+
T Consensus 246 ~~~t~~G~~~v----------------------------------m~qNP~NaVih~GhsnGtVSlWSP~--skePLvKi 289 (545)
T KOG1272|consen 246 SIRTGAGRTDV----------------------------------MKQNPYNAVIHLGHSNGTVSLWSPN--SKEPLVKI 289 (545)
T ss_pred HHHccCCccch----------------------------------hhcCCccceEEEcCCCceEEecCCC--CcchHHHH
Confidence 33322222222 2344556677789999999999986 55577778
Q ss_pred cCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288 416 EGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIH 486 (513)
Q Consensus 416 ~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~ 486 (513)
..|.++|.. ++++++|+|+++.|.|..++|||++.-..+.++.. .-+...+++|..+.+.++-+.-+.
T Consensus 290 LcH~g~V~s--iAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~SqkglLA~~~G~~v~ 357 (545)
T KOG1272|consen 290 LCHRGPVSS--IAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKGLLALSYGDHVQ 357 (545)
T ss_pred HhcCCCcce--EEECCCCcEEeecccccceeEeeeccccccceeec-CCCccccccccccceeeecCCeee
Confidence 889999988 89999999999999999999999999887777655 455778888877666655554433
No 209
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=4.3e-10 Score=114.59 Aligned_cols=185 Identities=11% Similarity=0.033 Sum_probs=124.3
Q ss_pred EEeccccCcEEEEEEcCCCCEEEEEeC----CeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEE-EEEeCCCe--EEE
Q 037288 250 HLVASFKCTVWTADFCTNPSQAVIGTN----LGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVV-LCGFRNGA--IVT 322 (513)
Q Consensus 250 ~~~~~h~~~V~~~~~s~~g~~l~s~s~----~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l-~sg~~dg~--i~i 322 (513)
..+..|...+...+|+|||+.|+..+. ..|.+||+.+++...+......+.+.+|+|||+.| ++.+.++. |++
T Consensus 195 ~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~ 274 (435)
T PRK05137 195 RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYT 274 (435)
T ss_pred EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEE
Confidence 346677889999999999998886642 34999999999876665666778899999999765 45566655 777
Q ss_pred EECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEec-CC--eE
Q 037288 323 VDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSM-DG--TV 399 (513)
Q Consensus 323 wd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~-dg--~i 399 (513)
||+.++.. ..+..+...... ..|+|+|+.|+..+. +| .|
T Consensus 275 ~d~~~~~~----~~Lt~~~~~~~~----------------------------------~~~spDG~~i~f~s~~~g~~~I 316 (435)
T PRK05137 275 MDLRSGTT----TRLTDSPAIDTS----------------------------------PSYSPDGSQIVFESDRSGSPQL 316 (435)
T ss_pred EECCCCce----EEccCCCCccCc----------------------------------eeEcCCCCEEEEEECCCCCCeE
Confidence 78876653 223322221111 367889998887764 33 57
Q ss_pred EEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCc
Q 037288 400 KLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGED---CKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRS 476 (513)
Q Consensus 400 ~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~D---g~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~ 476 (513)
.++|+. .+....+..+...+.. ..|+|+|++|+..+.+ ..|.+||+.++.. ..+.. ...+....|+|++.
T Consensus 317 y~~d~~---g~~~~~lt~~~~~~~~--~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~-~~~~~~p~~spDG~ 389 (435)
T PRK05137 317 YVMNAD---GSNPRRISFGGGRYST--PVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS-GFLVEGPTWAPNGR 389 (435)
T ss_pred EEEECC---CCCeEEeecCCCcccC--eEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccC-CCCCCCCeECCCCC
Confidence 777864 3334444433333333 6799999999876653 3688899866543 33332 23467889999965
Q ss_pred eEE
Q 037288 477 MGP 479 (513)
Q Consensus 477 ~~~ 479 (513)
+++
T Consensus 390 ~i~ 392 (435)
T PRK05137 390 VIM 392 (435)
T ss_pred EEE
Confidence 433
No 210
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.29 E-value=1.5e-10 Score=111.50 Aligned_cols=212 Identities=13% Similarity=0.081 Sum_probs=147.9
Q ss_pred CCCCceeeeeEEeccccCeEEEEEeecccccccceeEEeeeccccccccccccccCCCCCccccCcceeeecccceEEEe
Q 037288 116 TPEGQFRTDVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNKTESSKAPEHIWRLNKASILMPSSVSCIKL 195 (513)
Q Consensus 116 ~~~g~~~~~~l~tg~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~s~i~si~~ 195 (513)
+..|....|.++..+.||.+.|.+....-+. .-.++...+.+.-|+|+++-+..
T Consensus 68 s~~~g~~~d~~~i~s~DGkf~il~k~~rVE~-----------------sv~AH~~A~~~gRW~~dGtgLlt--------- 121 (737)
T KOG1524|consen 68 SSGGGKGSDTLLICSNDGRFVILNKSARVER-----------------SISAHAAAISSGRWSPDGAGLLT--------- 121 (737)
T ss_pred ccCCCCCcceEEEEcCCceEEEecccchhhh-----------------hhhhhhhhhhhcccCCCCceeee---------
Confidence 3344456788999999999998876333211 12233344778889888544332
Q ss_pred cCCCCccccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEe
Q 037288 196 FGKHPSCATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGT 275 (513)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s 275 (513)
...+|.+.+|+-..... .++.....+|+|++|.|+..-++.+.
T Consensus 122 ------------------------~GEDG~iKiWSrsGMLR-------------Stl~Q~~~~v~c~~W~p~S~~vl~c~ 164 (737)
T KOG1524|consen 122 ------------------------AGEDGVIKIWSRSGMLR-------------STVVQNEESIRCARWAPNSNSIVFCQ 164 (737)
T ss_pred ------------------------ecCCceEEEEeccchHH-------------HHHhhcCceeEEEEECCCCCceEEec
Confidence 23577777776542110 11334557999999999999888887
Q ss_pred CCeEEEEECCCCc-EEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCC--e
Q 037288 276 NLGAAMVDMETGM-ASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND--R 352 (513)
Q Consensus 276 ~~~i~vwd~~~~~-~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~--~ 352 (513)
.+.+.|=.+.-.. .++-..|.+-|.+++|++..+++++|+.|-..++||-.... +-+-..|..+|++++|+| .
T Consensus 165 g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~----Lf~S~~~ey~ITSva~npd~~ 240 (737)
T KOG1524|consen 165 GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGAN----LFTSAAEEYAITSVAFNPEKD 240 (737)
T ss_pred CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcc----cccCChhccceeeeeeccccc
Confidence 7777665555443 34444588889999999999999999999999999986443 457788999999999999 6
Q ss_pred EEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEE
Q 037288 353 VTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKL 401 (513)
Q Consensus 353 ~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~l 401 (513)
++.+++....- .-...+++..+ .|++||..++.|+..|.+.+
T Consensus 241 ~~v~S~nt~R~------~~p~~GSifnl-sWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 241 YLLWSYNTARF------SSPRVGSIFNL-SWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred eeeeeeeeeee------cCCCccceEEE-EEcCCCceeeccccCceEEE
Confidence 66776553220 01112345554 78999999999999888754
No 211
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.29 E-value=7.9e-10 Score=101.89 Aligned_cols=189 Identities=9% Similarity=0.040 Sum_probs=117.5
Q ss_pred eccccCcEEEEEEcCCCCEEEEEe--CCeEEEEECCCCcEEEEe-eeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCC
Q 037288 252 VASFKCTVWTADFCTNPSQAVIGT--NLGAAMVDMETGMASWVC-RSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKR 328 (513)
Q Consensus 252 ~~~h~~~V~~~~~s~~g~~l~s~s--~~~i~vwd~~~~~~~~~~-~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~ 328 (513)
-.+| ..|..+.|++||..+++++ +..|.|||..++..+.+. ...+.+.-+.|+|||.+|++++-|+..++|.....
T Consensus 192 ~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~ 270 (445)
T KOG2139|consen 192 DPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQS 270 (445)
T ss_pred CCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhccc
Confidence 4456 7999999999999999885 445999999999877766 35667999999999999999999999999965443
Q ss_pred ccccccccccccCcCeEEEeeCC----eEEEe---------EeecccCccc------ceeE--------eec-----CCC
Q 037288 329 QRGCSSRAGRRHRIPYSRLQRND----RVTNE---------QWFELKANIW------PSHT--------TFM-----PSS 376 (513)
Q Consensus 329 ~~~~~~~~~~~h~~~v~~v~~~~----~~~s~---------~w~~~~~~~~------~~~~--------~~~-----~~~ 376 (513)
-... ...--.+.|..-.|+| .+++. +++...+... .... +.. .+.
T Consensus 271 wt~e---rw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cge 347 (445)
T KOG2139|consen 271 WTKE---RWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGE 347 (445)
T ss_pred ceec---ceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCc
Confidence 2211 2222344788888888 22222 2333322221 0000 000 223
Q ss_pred ceEEEEEcCCCCEEEEEecCCe--------EEEEecCCCCccceE-EecCC---CCceeEEEEEEcC---CCCEEEEEeC
Q 037288 377 ISCLQSLQLYDQYFLASSMDGT--------VKLYDHRLTTRGAVQ-SYEGH---VNSHTRIQLGVDQ---SERFVMSGGE 441 (513)
Q Consensus 377 v~~~~~~~~~~~~l~s~s~dg~--------i~lwd~~~~~~~~~~-~~~~h---~~~v~~~~~~~s~---~g~~l~sg~~ 441 (513)
+.++ ++.|.|.+||+.-..+. |.+||.+ ...++. .+-|- ..+ .. ++|+| ++.+|..+=.
T Consensus 348 aq~l-awDpsGeyLav~fKg~~~v~~~k~~i~~fdtr--~sp~vels~cg~i~ge~P-~~--IsF~pl~n~g~lLsiaWs 421 (445)
T KOG2139|consen 348 AQCL-AWDPSGEYLAVIFKGQSFVLLCKLHISRFDTR--KSPPVELSYCGMIGGEYP-AY--ISFGPLKNEGRLLSIAWS 421 (445)
T ss_pred ccee-eECCCCCEEEEEEcCCchhhhhhhhhhhhccc--ccCceEEEecccccCCCC-ce--EEeeecccCCcEEEEEec
Confidence 4444 78999999998765444 6677876 332221 11111 111 12 34443 4555555555
Q ss_pred CCcEEEEeC
Q 037288 442 DCKLRIWSI 450 (513)
Q Consensus 442 Dg~v~vwd~ 450 (513)
-|.+.-|++
T Consensus 422 TGriq~ypl 430 (445)
T KOG2139|consen 422 TGRIQRYPL 430 (445)
T ss_pred cCceEeeee
Confidence 666666654
No 212
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.29 E-value=8.2e-12 Score=118.20 Aligned_cols=181 Identities=17% Similarity=0.170 Sum_probs=133.6
Q ss_pred EEeccccCcEEEEEEcCCCCEEEEEeCCe-EEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCC
Q 037288 250 HLVASFKCTVWTADFCTNPSQAVIGTNLG-AAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRK 327 (513)
Q Consensus 250 ~~~~~h~~~V~~~~~s~~g~~l~s~s~~~-i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~ 327 (513)
+.+..| ..|..+.|-|.--+|+++++.+ ++--|+.+|+.+..+. ..+.+..+.-+|-..++-.|..+|+|.+|....
T Consensus 204 HClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~s 282 (545)
T KOG1272|consen 204 HCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNS 282 (545)
T ss_pred eehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCC
Confidence 334433 5789999999988999888766 7888999999877766 455688888899999999999999999999988
Q ss_pred CccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCC
Q 037288 328 RQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLT 407 (513)
Q Consensus 328 ~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~ 407 (513)
.++ +..+..|.++|.+|+ +.++|+|++|++.|..|+|||+|
T Consensus 283 keP---LvKiLcH~g~V~siA----------------------------------v~~~G~YMaTtG~Dr~~kIWDlR-- 323 (545)
T KOG1272|consen 283 KEP---LVKILCHRGPVSSIA----------------------------------VDRGGRYMATTGLDRKVKIWDLR-- 323 (545)
T ss_pred cch---HHHHHhcCCCcceEE----------------------------------ECCCCcEEeecccccceeEeeec--
Confidence 876 458889999998854 55699999999999999999999
Q ss_pred CccceEEecC-CCCceeEEEEEEcCCCCEEEEEeCCCcEEEEe-CCCC--eEEEEecCC--CCCeEEEEEcCCCc
Q 037288 408 TRGAVQSYEG-HVNSHTRIQLGVDQSERFVMSGGEDCKLRIWS-IRSG--ELVFEDKFS--NSVPSAVCWRTQRS 476 (513)
Q Consensus 408 ~~~~~~~~~~-h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd-~~~~--~~~~~~~~~--~~~v~~v~~~p~~~ 476 (513)
....+.++.. |.. -.+++|..| +++.+....|.||. ...+ ..-.-+..| .++|..+.|.|-..
T Consensus 324 ~~~ql~t~~tp~~a----~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~ED 392 (545)
T KOG1272|consen 324 NFYQLHTYRTPHPA----SNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYED 392 (545)
T ss_pred cccccceeecCCCc----ccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHH
Confidence 4334444433 322 226677555 55566677899994 3221 211112222 45899999999743
No 213
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=6.5e-10 Score=113.13 Aligned_cols=183 Identities=12% Similarity=0.066 Sum_probs=120.4
Q ss_pred EeccccCcEEEEEEcCCCCEEEEEeC----CeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEE-EEeCCC--eEEEE
Q 037288 251 LVASFKCTVWTADFCTNPSQAVIGTN----LGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVL-CGFRNG--AIVTV 323 (513)
Q Consensus 251 ~~~~h~~~V~~~~~s~~g~~l~s~s~----~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~-sg~~dg--~i~iw 323 (513)
.+..|...+.+.+|+|||+.|+..+. ..|.+||+.+++...+....+...+.+|+|||+.|+ +.+.+| .|++|
T Consensus 198 ~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~ 277 (433)
T PRK04922 198 TILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVM 277 (433)
T ss_pred EeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEE
Confidence 35567778999999999999887652 248999999888766555555567889999997654 555555 59999
Q ss_pred ECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEec-CCe--EE
Q 037288 324 DVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSM-DGT--VK 400 (513)
Q Consensus 324 d~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~-dg~--i~ 400 (513)
|+.+++.. .+..+...... ..|+|+|+.|+.++. +|. |.
T Consensus 278 d~~~g~~~----~lt~~~~~~~~----------------------------------~~~spDG~~l~f~sd~~g~~~iy 319 (433)
T PRK04922 278 DLGSRQLT----RLTNHFGIDTE----------------------------------PTWAPDGKSIYFTSDRGGRPQIY 319 (433)
T ss_pred ECCCCCeE----ECccCCCCccc----------------------------------eEECCCCCEEEEEECCCCCceEE
Confidence 99876532 22222211111 367889998887764 455 55
Q ss_pred EEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCC---cEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCce
Q 037288 401 LYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDC---KLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSM 477 (513)
Q Consensus 401 lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg---~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~ 477 (513)
++|+. .+....+..+..... ..+|+|||++|+..+.++ .|.+||+.+++.. .+.. ........|+|++.+
T Consensus 320 ~~dl~---~g~~~~lt~~g~~~~--~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~-~~~~~~p~~spdG~~ 392 (433)
T PRK04922 320 RVAAS---GGSAERLTFQGNYNA--RASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTP-GSLDESPSFAPNGSM 392 (433)
T ss_pred EEECC---CCCeEEeecCCCCcc--CEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCC-CCCCCCceECCCCCE
Confidence 55653 222333322222222 378999999998765443 6999999888765 3332 234557799999654
Q ss_pred E
Q 037288 478 G 478 (513)
Q Consensus 478 ~ 478 (513)
+
T Consensus 393 i 393 (433)
T PRK04922 393 V 393 (433)
T ss_pred E
Confidence 3
No 214
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.27 E-value=2.5e-09 Score=109.17 Aligned_cols=224 Identities=9% Similarity=0.035 Sum_probs=164.4
Q ss_pred EEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEE-----eeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCC-Ccccc
Q 037288 259 VWTADFCTNPSQAVIGTNLGAAMVDMETGMASWV-----CRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRK-RQRGC 332 (513)
Q Consensus 259 V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~-----~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~-~~~~~ 332 (513)
-.++.+++.|.+.+..-+..+.+|+..++..... ..|.-.+++.+++|.++++++|..||.|.+|.--. .....
T Consensus 163 ~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~ 242 (792)
T KOG1963|consen 163 PKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSE 242 (792)
T ss_pred CccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccc
Confidence 4578888999999989899999999887551111 12555689999999999999999999999996433 22222
Q ss_pred ccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEE
Q 037288 333 SSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLY 402 (513)
Q Consensus 333 ~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lw 402 (513)
+...+.-|..+|.++.|++ .+++|+ |...+++ +....++.+.+..+ .++|++.+.+....|+.|.+.
T Consensus 243 t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqfLPRLgs~I~~i-~vS~ds~~~sl~~~DNqI~li 319 (792)
T KOG1963|consen 243 TCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK--KQFLPRLGSPILHI-VVSPDSDLYSLVLEDNQIHLI 319 (792)
T ss_pred cceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC--cccccccCCeeEEE-EEcCCCCeEEEEecCceEEEE
Confidence 2567889999999999998 888888 8887776 34455667777776 667999999999999999999
Q ss_pred ecCCCCcc-ceEEecCC--------CCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec-----CCC-----
Q 037288 403 DHRLTTRG-AVQSYEGH--------VNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDK-----FSN----- 463 (513)
Q Consensus 403 d~~~~~~~-~~~~~~~h--------~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~-----~~~----- 463 (513)
......-. .+..+..- .+-.+. ++++|.-+.++-.+..|.|.+||+.+.+.+..+. .++
T Consensus 320 ~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~--~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~ 397 (792)
T KOG1963|consen 320 KASDLEIKSTISGIKPPTPSTKTRPQSLTTG--VSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNI 397 (792)
T ss_pred eccchhhhhhccCccCCCcccccccccccee--EEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCccee
Confidence 87421111 22222211 222333 7788877778888899999999999888776642 122
Q ss_pred -CCeEEEEEcCCCceEEeeCCCeee
Q 037288 464 -SVPSAVCWRTQRSMGPQIEGKIHE 487 (513)
Q Consensus 464 -~~v~~v~~~p~~~~~~t~~~~~~~ 487 (513)
-.+++++.+-.+.+++|.+-.+.+
T Consensus 398 ~v~itav~~~~~gs~maT~E~~~d~ 422 (792)
T KOG1963|consen 398 QVGITAVARSRFGSWMATLEARIDK 422 (792)
T ss_pred EEeeeeehhhccceEEEEeeeeehh
Confidence 246777888788899998877653
No 215
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.27 E-value=8.2e-10 Score=102.54 Aligned_cols=194 Identities=13% Similarity=0.149 Sum_probs=136.5
Q ss_pred cccCcEEEEEEcCCCCEEEEEeC-CeEEEEECCCCcEEEEeeeCC---CeEEEEEecCCcEEEEEeCCCeEEEEECCCCc
Q 037288 254 SFKCTVWTADFCTNPSQAVIGTN-LGAAMVDMETGMASWVCRSKS---DILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQ 329 (513)
Q Consensus 254 ~h~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~~~~~~~~~~~---~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~ 329 (513)
.|...|.|++|....+++.+|.. ++|.+-|+++.+.+....|.. .|..+..+|..+.|++.+.++.|.+||++...
T Consensus 103 ~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~ 182 (609)
T KOG4227|consen 103 PHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQ 182 (609)
T ss_pred ccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCC
Confidence 46689999999998899998865 569999999999988888665 89999999999999999999999999999876
Q ss_pred cccccccccccCcCeEEEeeCC----eEEEeE-------eecccCccc----------c---------------------
Q 037288 330 RGCSSRAGRRHRIPYSRLQRND----RVTNEQ-------WFELKANIW----------P--------------------- 367 (513)
Q Consensus 330 ~~~~~~~~~~h~~~v~~v~~~~----~~~s~~-------w~~~~~~~~----------~--------------------- 367 (513)
....+..+.........+.|+| .+++.+ |+.+..+.. +
T Consensus 183 ~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msi 262 (609)
T KOG4227|consen 183 NPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSI 262 (609)
T ss_pred CCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhh
Confidence 3221223334456677888888 344333 655432100 0
Q ss_pred -----------------eeEeecCC-C------ceEEEEEcCCCCEEEEEecCCeEEEEecCCCC---------------
Q 037288 368 -----------------SHTTFMPS-S------ISCLQSLQLYDQYFLASSMDGTVKLYDHRLTT--------------- 408 (513)
Q Consensus 368 -----------------~~~~~~~~-~------v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~--------------- 408 (513)
...+.|.. . +.+ ++|- +..-+++|+.+-.|++|.+....
T Consensus 263 RR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS-~~F~-~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~ 340 (609)
T KOG4227|consen 263 RRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKS-MTFI-DDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEM 340 (609)
T ss_pred hccCCCEEeeeecccceeEeccCCCCcceeeeeeee-eeee-cceeeeccCcccceEEEecCCCccccCccccCcchhhC
Confidence 00000100 0 111 1222 33458899999999999874210
Q ss_pred ------ccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 037288 409 ------RGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIR 451 (513)
Q Consensus 409 ------~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~ 451 (513)
.+.+..++||..-+.. +.|+|...+|++.|-...++||+-.
T Consensus 341 ~~~~~i~~~~~VLrGHRSv~NQ--VRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 341 PSEIFIEKELTVLRGHRSVPNQ--VRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred chhheecceeEEEecccccccc--eeecCCcceEeccchhhheeccccc
Confidence 1134567889887766 8899999999999999999999753
No 216
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.27 E-value=6.3e-09 Score=94.59 Aligned_cols=162 Identities=14% Similarity=0.211 Sum_probs=117.1
Q ss_pred ccccCcEEEEEEcCCCCEEEEEeCCeEEEEECCC-CcEEEEee---eCCCeEEEEEecCCcEEEE-EeCCCeEEEEECCC
Q 037288 253 ASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMET-GMASWVCR---SKSDILAQQVIHSGNVVLC-GFRNGAIVTVDVRK 327 (513)
Q Consensus 253 ~~h~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~-~~~~~~~~---~~~~V~~l~~~~~~~~l~s-g~~dg~i~iwd~~~ 327 (513)
.....+|.++.+.++ .+++.-.+.|.||...+ .+.+..+. .+..+.++.-+.+..+|+. |-.-|.|+|-|+..
T Consensus 91 l~f~~~I~~V~l~r~--riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~ 168 (346)
T KOG2111|consen 91 LSFNSEIKAVKLRRD--RIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLAS 168 (346)
T ss_pred EEeccceeeEEEcCC--eEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhh
Confidence 345678999988654 78888889999999874 34444444 2334444443333344443 45579999999987
Q ss_pred CccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCe-EEEEecCC
Q 037288 328 RQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGT-VKLYDHRL 406 (513)
Q Consensus 328 ~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~-i~lwd~~~ 406 (513)
.+..+ -..+.+|...|.+ +.+..+|..+||+|..|+ |+|||..
T Consensus 169 ~~~~~-p~~I~AH~s~Iac----------------------------------v~Ln~~Gt~vATaStkGTLIRIFdt~- 212 (346)
T KOG2111|consen 169 TKPNA-PSIINAHDSDIAC----------------------------------VALNLQGTLVATASTKGTLIRIFDTE- 212 (346)
T ss_pred cCcCC-ceEEEcccCceeE----------------------------------EEEcCCccEEEEeccCcEEEEEEEcC-
Confidence 76532 2355666666666 356679999999999988 7899997
Q ss_pred CCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 037288 407 TTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSG 453 (513)
Q Consensus 407 ~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~ 453 (513)
+...++.+......-...+++|||+..+|+++|..|+|+||.++..
T Consensus 213 -~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 213 -DGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred -CCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 5668888875555445566999999999999999999999998763
No 217
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.26 E-value=7.4e-10 Score=102.09 Aligned_cols=187 Identities=11% Similarity=0.048 Sum_probs=124.5
Q ss_pred cCcEEEEEEcCC-CCEEEEEeCCeEEEEECCCC----c--------EEEEee--eCCCeEEEEEecCCcEEEEEeC-CCe
Q 037288 256 KCTVWTADFCTN-PSQAVIGTNLGAAMVDMETG----M--------ASWVCR--SKSDILAQQVIHSGNVVLCGFR-NGA 319 (513)
Q Consensus 256 ~~~V~~~~~s~~-g~~l~s~s~~~i~vwd~~~~----~--------~~~~~~--~~~~V~~l~~~~~~~~l~sg~~-dg~ 319 (513)
+..|.|++|-|. +..|+.|...+|.+|..... + ...+++ .+..|++++|++||..+++++. |..
T Consensus 140 QrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsss 219 (445)
T KOG2139|consen 140 QRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSS 219 (445)
T ss_pred hcceeEEEeccCCcceeeeeecceeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcce
Confidence 468999999994 55888999999999976432 1 111222 3456999999999998888875 689
Q ss_pred EEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeE
Q 037288 320 IVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTV 399 (513)
Q Consensus 320 i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i 399 (513)
|.|||..++..++ +. ....+-.++..|+|++.+|..++-|+..
T Consensus 220 i~iWdpdtg~~~p-L~------------------------------------~~glgg~slLkwSPdgd~lfaAt~davf 262 (445)
T KOG2139|consen 220 IMIWDPDTGQKIP-LI------------------------------------PKGLGGFSLLKWSPDGDVLFAATCDAVF 262 (445)
T ss_pred EEEEcCCCCCccc-cc------------------------------------ccCCCceeeEEEcCCCCEEEEeccccee
Confidence 9999999988655 11 1112233446889999999999999999
Q ss_pred EEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe---------------EEEEec----
Q 037288 400 KLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGE---------------LVFEDK---- 460 (513)
Q Consensus 400 ~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~---------------~~~~~~---- 460 (513)
++|.... ......-.. ..+.|.. .+|+|+|++|+-++. |.-++|++.... ++..+.
T Consensus 263 rlw~e~q-~wt~erw~l-gsgrvqt--acWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti 337 (445)
T KOG2139|consen 263 RLWQENQ-SWTKERWIL-GSGRVQT--ACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTI 337 (445)
T ss_pred eeehhcc-cceecceec-cCCceee--eeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhh
Confidence 9997541 111222222 2335554 899999998766553 334455543211 111111
Q ss_pred -C----CCCCeEEEEEcCCCceEEeeCCC
Q 037288 461 -F----SNSVPSAVCWRTQRSMGPQIEGK 484 (513)
Q Consensus 461 -~----~~~~v~~v~~~p~~~~~~t~~~~ 484 (513)
. -.+.+.+++|.|.+.++|..-..
T Consensus 338 ~ag~~l~cgeaq~lawDpsGeyLav~fKg 366 (445)
T KOG2139|consen 338 CAGQRLCCGEAQCLAWDPSGEYLAVIFKG 366 (445)
T ss_pred hcCcccccCccceeeECCCCCEEEEEEcC
Confidence 1 14678999999998777765433
No 218
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.25 E-value=3.4e-09 Score=96.55 Aligned_cols=201 Identities=8% Similarity=-0.023 Sum_probs=118.3
Q ss_pred EEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCc----------------
Q 037288 279 AAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRI---------------- 342 (513)
Q Consensus 279 i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~---------------- 342 (513)
+.+||..-.-.+..+...-.+..++|+|.+++|++|+.|+.+++.+--+-+....+..+..-.+
T Consensus 193 laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql 272 (447)
T KOG4497|consen 193 LAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQL 272 (447)
T ss_pred EEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhh
Confidence 3445543222333444456789999999999999999999999876544432211111111111
Q ss_pred CeEEEeeCC-eEEEeEeecccC------------cccceeEeecCCCceEEEEEcCCCCEEEEEec--CCeEEEEecCCC
Q 037288 343 PYSRLQRND-RVTNEQWFELKA------------NIWPSHTTFMPSSISCLQSLQLYDQYFLASSM--DGTVKLYDHRLT 407 (513)
Q Consensus 343 ~v~~v~~~~-~~~s~~w~~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~--dg~i~lwd~~~~ 407 (513)
...++.|.| .+-.+-|...+. .++|......+.....+.+|++|..++++-.. -+.+-+||++
T Consensus 273 ~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq-- 350 (447)
T KOG4497|consen 273 LHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQ-- 350 (447)
T ss_pred cccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEech--
Confidence 123444544 222222332211 11111112223334556789999999998654 3678899997
Q ss_pred CccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCCe
Q 037288 408 TRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKI 485 (513)
Q Consensus 408 ~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~ 485 (513)
..+.-..+ ....+|.. +.|+|....|+.+.....+++|.......+.... .+-.|..++|+-.+..++-.+.|-
T Consensus 351 ~l~l~avL-iQk~pira--f~WdP~~prL~vctg~srLY~W~psg~~~V~vP~-~GF~i~~l~W~~~g~~i~l~~kDa 424 (447)
T KOG4497|consen 351 NLKLHAVL-IQKHPIRA--FEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPK-KGFNIQKLQWLQPGEFIVLCGKDA 424 (447)
T ss_pred hhhhhhhh-hhccceeE--EEeCCCCceEEEEcCCceEEEEcCCCceEEecCC-CCceeeeEEecCCCcEEEEEcCCc
Confidence 33322222 12333444 8899988777777767789999988766666543 346699999998876666555553
No 219
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.25 E-value=1.1e-10 Score=112.47 Aligned_cols=160 Identities=14% Similarity=0.098 Sum_probs=117.0
Q ss_pred CcEEEEEEcCCCC--EEEEEeCCeEEEEECCCC--------------cEEEE--------------e-eeCCCeEEEEEe
Q 037288 257 CTVWTADFCTNPS--QAVIGTNLGAAMVDMETG--------------MASWV--------------C-RSKSDILAQQVI 305 (513)
Q Consensus 257 ~~V~~~~~s~~g~--~l~s~s~~~i~vwd~~~~--------------~~~~~--------------~-~~~~~V~~l~~~ 305 (513)
..|+|+.|-|.+. ++++=.++.+.++|.+-. ....+ . -..+.|..++|+
T Consensus 220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS 299 (636)
T KOG2394|consen 220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFS 299 (636)
T ss_pred cceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEc
Confidence 6899999998443 555556777888865311 11010 0 134568899999
Q ss_pred cCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcC
Q 037288 306 HSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQL 385 (513)
Q Consensus 306 ~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~ 385 (513)
|||++||+.+.||.++|||..+.+... .+...-+...| ++|+|
T Consensus 300 ~DG~~LA~VSqDGfLRvF~fdt~eLlg---~mkSYFGGLLC----------------------------------vcWSP 342 (636)
T KOG2394|consen 300 PDGKYLATVSQDGFLRIFDFDTQELLG---VMKSYFGGLLC----------------------------------VCWSP 342 (636)
T ss_pred CCCceEEEEecCceEEEeeccHHHHHH---HHHhhccceEE----------------------------------EEEcC
Confidence 999999999999999999999876533 22222233333 47788
Q ss_pred CCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcC-------------------------------C--
Q 037288 386 YDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQ-------------------------------S-- 432 (513)
Q Consensus 386 ~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~-------------------------------~-- 432 (513)
||+|+++|+.|.-|.||.+. +...+..-+||...|.. ++|+| +
T Consensus 343 DGKyIvtGGEDDLVtVwSf~--erRVVARGqGHkSWVs~--VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S 418 (636)
T KOG2394|consen 343 DGKYIVTGGEDDLVTVWSFE--ERRVVARGQGHKSWVSV--VAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGS 418 (636)
T ss_pred CccEEEecCCcceEEEEEec--cceEEEeccccccceee--EeecccccccccccccccccccccchhcccccccCCCCC
Confidence 99999999999999999997 66688888999999988 66652 1
Q ss_pred --C-------------CEEEEEeCCCcEEEEeCCCCeEEE
Q 037288 433 --E-------------RFVMSGGEDCKLRIWSIRSGELVF 457 (513)
Q Consensus 433 --g-------------~~l~sg~~Dg~v~vwd~~~~~~~~ 457 (513)
+ -.+.+.++|-.+.+||+....+..
T Consensus 419 ~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~~ 458 (636)
T KOG2394|consen 419 AEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLVP 458 (636)
T ss_pred cCCCcccccccccceEEEeecccccceEEEEecchhhccc
Confidence 1 136788999999999997655443
No 220
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.24 E-value=4.7e-10 Score=104.42 Aligned_cols=203 Identities=14% Similarity=0.161 Sum_probs=142.7
Q ss_pred CCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCC-EEEEEeCC---eEEEEECCCCcEEEEee---
Q 037288 222 TGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPS-QAVIGTNL---GAAMVDMETGMASWVCR--- 294 (513)
Q Consensus 222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~-~l~s~s~~---~i~vwd~~~~~~~~~~~--- 294 (513)
..|.+.++....++.... ....+..+ ..+..+.-++... ++|+|+.. .+.+||+++.+.++.-.
T Consensus 123 ~sG~l~~~~~k~~d~hss--------~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvp 193 (412)
T KOG3881|consen 123 SSGNLQVRHDKSGDLHSS--------KLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVP 193 (412)
T ss_pred cCCcEEEEeccCCccccc--------cceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCC
Confidence 577888887775543211 11222222 4566676666544 45557654 38999999886665443
Q ss_pred -------eCCCeEEEEEecC--CcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcc
Q 037288 295 -------SKSDILAQQVIHS--GNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANI 365 (513)
Q Consensus 295 -------~~~~V~~l~~~~~--~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~ 365 (513)
-+-.++++.|-+. ...|++++.-+.+++||.+.++. ||.+++|
T Consensus 194 nD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRR------------PV~~fd~---------------- 245 (412)
T KOG3881|consen 194 NDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRR------------PVAQFDF---------------- 245 (412)
T ss_pred CccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCc------------ceeEecc----------------
Confidence 1224688899887 78999999999999999996653 2222222
Q ss_pred cceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccc-eEEecCCCCceeEEEEEEcCCCCEEEEEeCCCc
Q 037288 366 WPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGA-VQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCK 444 (513)
Q Consensus 366 ~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~-~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~ 444 (513)
...++++ ....|+++++++|..-|.+..||+| .... ...+.+-.+.+.. +..+|...+|+++|.|..
T Consensus 246 -------~E~~is~-~~l~p~gn~Iy~gn~~g~l~~FD~r--~~kl~g~~~kg~tGsirs--ih~hp~~~~las~GLDRy 313 (412)
T KOG3881|consen 246 -------LENPISS-TGLTPSGNFIYTGNTKGQLAKFDLR--GGKLLGCGLKGITGSIRS--IHCHPTHPVLASCGLDRY 313 (412)
T ss_pred -------ccCccee-eeecCCCcEEEEecccchhheeccc--CceeeccccCCccCCcce--EEEcCCCceEEeecccee
Confidence 1223333 4667899999999999999999998 5553 3448888888877 778899999999999999
Q ss_pred EEEEeCCCCeEEEEecCCCCCeEEEEEcCC
Q 037288 445 LRIWSIRSGELVFEDKFSNSVPSAVCWRTQ 474 (513)
Q Consensus 445 v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~ 474 (513)
|||+|+.+.+++...-. .+.++.+-+.++
T Consensus 314 vRIhD~ktrkll~kvYv-Ks~lt~il~~~~ 342 (412)
T KOG3881|consen 314 VRIHDIKTRKLLHKVYV-KSRLTFILLRDD 342 (412)
T ss_pred EEEeecccchhhhhhhh-hccccEEEecCC
Confidence 99999999887765322 345667776555
No 221
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.21 E-value=1.5e-09 Score=98.65 Aligned_cols=168 Identities=13% Similarity=0.078 Sum_probs=119.5
Q ss_pred CeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCC-ccccccccccccCcCeEEEeeCCeEEE
Q 037288 277 LGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKR-QRGCSSRAGRRHRIPYSRLQRNDRVTN 355 (513)
Q Consensus 277 ~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~~~~h~~~v~~v~~~~~~~s 355 (513)
+.+.|||=...+++..+...++|.++.+.++. |++. ..+.|+||..... +... .
T Consensus 75 NkviIWDD~k~~~i~el~f~~~I~~V~l~r~r--iVvv-l~~~I~VytF~~n~k~l~---~------------------- 129 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSFNSEIKAVKLRRDR--IVVV-LENKIYVYTFPDNPKLLH---V------------------- 129 (346)
T ss_pred ceEEEEecccCcEEEEEEeccceeeEEEcCCe--EEEE-ecCeEEEEEcCCChhhee---e-------------------
Confidence 35889997778888889999999999998654 3333 3689999988733 3221 1
Q ss_pred eEeecccCcccceeEeecCCCceEEEEEcCCCCEEEE-EecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCC
Q 037288 356 EQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLA-SSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSER 434 (513)
Q Consensus 356 ~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s-~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~ 434 (513)
.-+...+.+.+++ .-..+..+||. |-.-|.|+|-|+.....++-..+.+|...+.+ ++.+.+|.
T Consensus 130 ------------~et~~NPkGlC~~-~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iac--v~Ln~~Gt 194 (346)
T KOG2111|consen 130 ------------IETRSNPKGLCSL-CPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIAC--VALNLQGT 194 (346)
T ss_pred ------------eecccCCCceEee-cCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeE--EEEcCCcc
Confidence 1112223333332 22223344444 34579999999974333345778899999988 77889999
Q ss_pred EEEEEeCCCc-EEEEeCCCCeEEEEecCC--CCCeEEEEEcCCCceEEeeCCC
Q 037288 435 FVMSGGEDCK-LRIWSIRSGELVFEDKFS--NSVPSAVCWRTQRSMGPQIEGK 484 (513)
Q Consensus 435 ~l~sg~~Dg~-v~vwd~~~~~~~~~~~~~--~~~v~~v~~~p~~~~~~t~~~~ 484 (513)
.||++|..|+ |||||..+|+++.+++.. ...|.+++|+|+..++|.++.+
T Consensus 195 ~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdK 247 (346)
T KOG2111|consen 195 LVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDK 247 (346)
T ss_pred EEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCC
Confidence 9999999998 799999999999998643 3569999999997666555543
No 222
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.20 E-value=2.5e-10 Score=104.47 Aligned_cols=179 Identities=18% Similarity=0.214 Sum_probs=121.9
Q ss_pred eccccCcEEEEEEcCCCCEEEEEeCCeEEEEECCCC-cEEEEee---e-----CCCeEEEEEecCC-cEEEEEeCCCeEE
Q 037288 252 VASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMETG-MASWVCR---S-----KSDILAQQVIHSG-NVVLCGFRNGAIV 321 (513)
Q Consensus 252 ~~~h~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~-~~~~~~~---~-----~~~V~~l~~~~~~-~~l~sg~~dg~i~ 321 (513)
-.+|+..|+++.++.|+..+.++.|-.|.+|+++-- +.-.+.. + ..-|++..|+|.. ++++-.+..|+|+
T Consensus 160 aNaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIr 239 (433)
T KOG1354|consen 160 ANAHTYHINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIR 239 (433)
T ss_pred cccceeEeeeeeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEE
Confidence 357999999999999999999998889999998743 2222222 2 1347899999976 7888888899999
Q ss_pred EEECCCCccccc-cccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEE
Q 037288 322 TVDVRKRQRGCS-SRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVK 400 (513)
Q Consensus 322 iwd~~~~~~~~~-~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~ 400 (513)
+-|+|....--. .+.+.....++..--| -..-++|.. +.|+++|+|+++-+.- +|+
T Consensus 240 LcDmR~~aLCd~hsKlfEepedp~~rsff---------------------seiIsSISD-vKFs~sGryilsRDyl-tvk 296 (433)
T KOG1354|consen 240 LCDMRQSALCDAHSKLFEEPEDPSSRSFF---------------------SEIISSISD-VKFSHSGRYILSRDYL-TVK 296 (433)
T ss_pred EeechhhhhhcchhhhhccccCCcchhhH---------------------HHHhhhhhc-eEEccCCcEEEEeccc-eeE
Confidence 999995532110 0111112222111000 001123333 4788899999987654 899
Q ss_pred EEecCCCCccceEEecCCCC------------cee-EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe
Q 037288 401 LYDHRLTTRGAVQSYEGHVN------------SHT-RIQLGVDQSERFVMSGGEDCKLRIWSIRSGE 454 (513)
Q Consensus 401 lwd~~~~~~~~~~~~~~h~~------------~v~-~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~ 454 (513)
+||+.+ ..+++.++..|.. .+. ...++|+.++.++++|+....++++++..|.
T Consensus 297 ~wD~nm-e~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 297 LWDLNM-EAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred EEeccc-cCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 999953 4558888877742 111 1347889899999999999999999976654
No 223
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.19 E-value=6.9e-09 Score=105.62 Aligned_cols=174 Identities=10% Similarity=0.052 Sum_probs=110.9
Q ss_pred ccCcEEEEEEcCCCCEEEEE-e-CC--eEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEe-CCCe--EEEEECCC
Q 037288 255 FKCTVWTADFCTNPSQAVIG-T-NL--GAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGF-RNGA--IVTVDVRK 327 (513)
Q Consensus 255 h~~~V~~~~~s~~g~~l~s~-s-~~--~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~-~dg~--i~iwd~~~ 327 (513)
+.....+.+|+|||+.++.. + ++ .|.+||+.+++...+..+.......+|+|||+.|+.++ .+|. |+++|+.+
T Consensus 246 ~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~ 325 (433)
T PRK04922 246 FRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASG 325 (433)
T ss_pred CCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 34445678999999977643 3 33 39999999988766555555567889999998776655 4554 66666655
Q ss_pred CccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCC---eEEEEec
Q 037288 328 RQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDG---TVKLYDH 404 (513)
Q Consensus 328 ~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg---~i~lwd~ 404 (513)
++... +..+. .... ...++|+|++++..+.++ .|.+||+
T Consensus 326 g~~~~----lt~~g---------------------------------~~~~-~~~~SpDG~~Ia~~~~~~~~~~I~v~d~ 367 (433)
T PRK04922 326 GSAER----LTFQG---------------------------------NYNA-RASVSPDGKKIAMVHGSGGQYRIAVMDL 367 (433)
T ss_pred CCeEE----eecCC---------------------------------CCcc-CEEECCCCCEEEEEECCCCceeEEEEEC
Confidence 44211 11000 0111 146789999998776543 5899998
Q ss_pred CCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCeEEEEecCCCCCeEEEEEcC
Q 037288 405 RLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGED---CKLRIWSIRSGELVFEDKFSNSVPSAVCWRT 473 (513)
Q Consensus 405 ~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~D---g~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p 473 (513)
. .+....+. +..... ...|+|||++|+..+.+ +.|+++++.. .....+..+.+.+...+|+|
T Consensus 368 ~---~g~~~~Lt-~~~~~~--~p~~spdG~~i~~~s~~~g~~~L~~~~~~g-~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 368 S---TGSVRTLT-PGSLDE--SPSFAPNGSMVLYATREGGRGVLAAVSTDG-RVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred C---CCCeEECC-CCCCCC--CceECCCCCEEEEEEecCCceEEEEEECCC-CceEEcccCCCCCCCCccCC
Confidence 5 33333443 222222 26899999988776653 4688888854 44555555556677888887
No 224
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.19 E-value=1.8e-09 Score=113.62 Aligned_cols=206 Identities=9% Similarity=0.092 Sum_probs=140.6
Q ss_pred eeEEeccccCcEEEEEEcCCC-CEEEEEeCCe-EEEEECCCC-------cEEEEee-eCCCeEEEEEecCCcEEEEEeCC
Q 037288 248 TMHLVASFKCTVWTADFCTNP-SQAVIGTNLG-AAMVDMETG-------MASWVCR-SKSDILAQQVIHSGNVVLCGFRN 317 (513)
Q Consensus 248 ~~~~~~~h~~~V~~~~~s~~g-~~l~s~s~~~-i~vwd~~~~-------~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~d 317 (513)
.+..+..|...|..++.++.. .++++|++++ |++||+..- +...++. ..+.+.++...+.++.+|+|+.|
T Consensus 1040 lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~D 1119 (1431)
T KOG1240|consen 1040 LVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKD 1119 (1431)
T ss_pred EeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCC
Confidence 356688899999999988754 8999997655 999997632 2333343 56679999999999999999999
Q ss_pred CeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcC-CC-CEEEEEec
Q 037288 318 GAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQL-YD-QYFLASSM 395 (513)
Q Consensus 318 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~-~~l~s~s~ 395 (513)
|.|.+.++....... ..+....+. .....+.+.++..+.. .+ ..++.+..
T Consensus 1120 G~v~~~~id~~~~~~----~~~~~~ri~------------------------n~~~~g~vv~m~a~~~~~~S~~lvy~T~ 1171 (1431)
T KOG1240|consen 1120 GSVRVLRIDHYNVSK----RVATQVRIP------------------------NLKKDGVVVSMHAFTAIVQSHVLVYATD 1171 (1431)
T ss_pred CeEEEEEcccccccc----ceeeeeecc------------------------cccCCCceEEeecccccccceeEEEEEe
Confidence 999999987631110 000000000 0111223333333322 22 37888999
Q ss_pred CCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecC-CCCCeEEEEEcCC
Q 037288 396 DGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKF-SNSVPSAVCWRTQ 474 (513)
Q Consensus 396 dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~-~~~~v~~v~~~p~ 474 (513)
-+.|..||+|+..........-..+.|+. ++.+|.+.|++.|...|.+-+||++-+.++....+ +..+++.++.+|-
T Consensus 1172 ~~~iv~~D~r~~~~~w~lk~~~~hG~vTS--i~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~ 1249 (1431)
T KOG1240|consen 1172 LSRIVSWDTRMRHDAWRLKNQLRHGLVTS--IVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPT 1249 (1431)
T ss_pred ccceEEecchhhhhHHhhhcCccccceeE--EEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeecc
Confidence 99999999984332223333334556666 88899999999999999999999999999998654 3467888887776
Q ss_pred C---ceEEeeCC
Q 037288 475 R---SMGPQIEG 483 (513)
Q Consensus 475 ~---~~~~t~~~ 483 (513)
. ...++++.
T Consensus 1250 ~~~~S~~vs~~~ 1261 (1431)
T KOG1240|consen 1250 YPQESVSVSAGS 1261 (1431)
T ss_pred CCCCceEEEecc
Confidence 2 44444444
No 225
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.17 E-value=5.9e-11 Score=107.82 Aligned_cols=209 Identities=12% Similarity=0.078 Sum_probs=141.8
Q ss_pred EEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcE-EEEEeCCCeEEEEECCCCccccccccccc
Q 037288 261 TADFCTNPSQAVIGTNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNV-VLCGFRNGAIVTVDVRKRQRGCSSRAGRR 339 (513)
Q Consensus 261 ~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~-l~sg~~dg~i~iwd~~~~~~~~~~~~~~~ 339 (513)
-+.|||+|+++|+.++-.+.|-|.++-+...++..-..|.-+.|..|..+ |.....|+.|.+|++...+... .+..
T Consensus 13 ~c~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~c---kIde 89 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRYRLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYC---KIDE 89 (447)
T ss_pred ceeECCCCCeeeeeeeeEEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEE---Eecc
Confidence 46899999999999998888889888776555555567888899988854 5555778999999998877533 3332
Q ss_pred cCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCC-EEEEEecCCeEEEEecCCCCccceEEecCC
Q 037288 340 HRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQ-YFLASSMDGTVKLYDHRLTTRGAVQSYEGH 418 (513)
Q Consensus 340 h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h 418 (513)
...++.+ ..++|+|+ .|.+...|-.|.+|.+. ..... -+.-.
T Consensus 90 g~agls~----------------------------------~~WSPdgrhiL~tseF~lriTVWSL~--t~~~~-~~~~p 132 (447)
T KOG4497|consen 90 GQAGLSS----------------------------------ISWSPDGRHILLTSEFDLRITVWSLN--TQKGY-LLPHP 132 (447)
T ss_pred CCCccee----------------------------------eeECCCcceEeeeecceeEEEEEEec--cceeE-Eeccc
Confidence 3333333 46788995 55567779999999996 32221 12211
Q ss_pred CCceeEEEEEEcCCCCEEEEEeC-CC--cEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCCee------e-e
Q 037288 419 VNSHTRIQLGVDQSERFVMSGGE-DC--KLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIH------E-E 488 (513)
Q Consensus 419 ~~~v~~~~~~~s~~g~~l~sg~~-Dg--~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~------~-~ 488 (513)
...+.. ++|+|||++.+-.+. |+ .+.|......+++..++...-..+++.|+|++..+|-=+.-+. | .
T Consensus 133 K~~~kg--~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~ 210 (447)
T KOG4497|consen 133 KTNVKG--YAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERG 210 (447)
T ss_pred ccCcee--EEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeec
Confidence 222344 889999999887765 32 2444445566677777766667889999999877775544332 1 0
Q ss_pred ----eccCCcccceeeeeeccceeeee
Q 037288 489 ----FDLGQRHSWEAWIGTQEGLFRMN 511 (513)
Q Consensus 489 ----~~~~~~~~~~~~~gs~~g~~~~~ 511 (513)
+..=...++...+|+.||+.|+-
T Consensus 211 lG~k~v~wsP~~qflavGsyD~~lrvl 237 (447)
T KOG4497|consen 211 LGLKFVEWSPCNQFLAVGSYDQMLRVL 237 (447)
T ss_pred cceeEEEeccccceEEeeccchhhhhh
Confidence 11112335667899999999875
No 226
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.16 E-value=2.3e-09 Score=108.98 Aligned_cols=191 Identities=13% Similarity=0.030 Sum_probs=122.3
Q ss_pred CeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCC---CeEEEEECCCCccccccccccccCcCeEEEeeCC--
Q 037288 277 LGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRN---GAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND-- 351 (513)
Q Consensus 277 ~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~-- 351 (513)
..|.+||........+..+...+.+.+|+|||+.|+..+.+ ..|++||+.+++... +..+.+|. ..+.|+|
T Consensus 184 ~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g~~---~~~~wSPDG 259 (429)
T PRK01742 184 YEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VASFRGHN---GAPAFSPDG 259 (429)
T ss_pred EEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-EecCCCcc---CceeECCCC
Confidence 35899998766655555677789999999999988877643 479999998775433 44455543 3578988
Q ss_pred -eEEEeE--------e--ecccCcccceeEeecCCCceEEEEEcCCCCEEEEEe-cCCeEEEEecCCCCccceEEecCCC
Q 037288 352 -RVTNEQ--------W--FELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASS-MDGTVKLYDHRLTTRGAVQSYEGHV 419 (513)
Q Consensus 352 -~~~s~~--------w--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s-~dg~i~lwd~~~~~~~~~~~~~~h~ 419 (513)
.++.+. | +...+.. ..+...........|+|+|+.|+.++ .+|...||++... ......+ ++.
T Consensus 260 ~~La~~~~~~g~~~Iy~~d~~~~~~---~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~-~~~~~~l-~~~ 334 (429)
T PRK01742 260 SRLAFASSKDGVLNIYVMGANGGTP---SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSAS-GGGASLV-GGR 334 (429)
T ss_pred CEEEEEEecCCcEEEEEEECCCCCe---EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECC-CCCeEEe-cCC
Confidence 444432 2 2222221 22222222333357899999877655 5788999987521 2223333 343
Q ss_pred CceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCC
Q 037288 420 NSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEG 483 (513)
Q Consensus 420 ~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~ 483 (513)
. .. ..|+|||++|+.++.++ +.+||+.+++........ ....+.|+|++.+++.+..
T Consensus 335 ~--~~--~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~ 391 (429)
T PRK01742 335 G--YS--AQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSST 391 (429)
T ss_pred C--CC--ccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEc
Confidence 3 23 67899999998887765 666999988765332222 2456889999766665543
No 227
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.16 E-value=2.7e-09 Score=95.55 Aligned_cols=96 Identities=18% Similarity=0.260 Sum_probs=74.3
Q ss_pred EEEcCCCCEEEEE--ecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCeE
Q 037288 381 QSLQLYDQYFLAS--SMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGED---CKLRIWSIRSGEL 455 (513)
Q Consensus 381 ~~~~~~~~~l~s~--s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~D---g~v~vwd~~~~~~ 455 (513)
+.|+|+++.|++. ..+..|.+||++ ...+..+.. ..+.. +.|+|+|++|++|+.+ |.|.+||+++.+.
T Consensus 65 ~~WsP~g~~favi~g~~~~~v~lyd~~---~~~i~~~~~--~~~n~--i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~ 137 (194)
T PF08662_consen 65 VAWSPNGNEFAVIYGSMPAKVTLYDVK---GKKIFSFGT--QPRNT--ISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKK 137 (194)
T ss_pred EEECcCCCEEEEEEccCCcccEEEcCc---ccEeEeecC--CCceE--EEECCCCCEEEEEEccCCCcEEEEEECCCCEE
Confidence 3667789887654 467899999994 446666643 33334 8899999999998754 6799999999999
Q ss_pred EEEecCCCCCeEEEEEcCCCceEEeeCCCe
Q 037288 456 VFEDKFSNSVPSAVCWRTQRSMGPQIEGKI 485 (513)
Q Consensus 456 ~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~ 485 (513)
+....+. .++.++|+|++.+++++....
T Consensus 138 i~~~~~~--~~t~~~WsPdGr~~~ta~t~~ 165 (194)
T PF08662_consen 138 ISTFEHS--DATDVEWSPDGRYLATATTSP 165 (194)
T ss_pred eeccccC--cEEEEEEcCCCCEEEEEEecc
Confidence 9887653 378999999999998887653
No 228
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.16 E-value=1.3e-08 Score=103.21 Aligned_cols=175 Identities=11% Similarity=0.059 Sum_probs=107.7
Q ss_pred ccCcEEEEEEcCCCCEEEEE-e-CCe--EEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEe-CCCeEEEEECC--C
Q 037288 255 FKCTVWTADFCTNPSQAVIG-T-NLG--AAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGF-RNGAIVTVDVR--K 327 (513)
Q Consensus 255 h~~~V~~~~~s~~g~~l~s~-s-~~~--i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~-~dg~i~iwd~~--~ 327 (513)
....+.+.+|+|||+.|+.. + ++. |.++|+.++....+..+...+....|+|||+.|+..+ .+|...+|.+. .
T Consensus 238 ~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~ 317 (427)
T PRK02889 238 FKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASG 317 (427)
T ss_pred CCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCC
Confidence 33456789999999988743 3 333 5555676666544444555567789999998666544 45666666553 3
Q ss_pred CccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCC---eEEEEec
Q 037288 328 RQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDG---TVKLYDH 404 (513)
Q Consensus 328 ~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg---~i~lwd~ 404 (513)
+.... + .+.+ ..... ..++|+|++++..+.++ .|.+||+
T Consensus 318 g~~~~-l-t~~g-----------------------------------~~~~~-~~~SpDG~~Ia~~s~~~g~~~I~v~d~ 359 (427)
T PRK02889 318 GAAQR-V-TFTG-----------------------------------SYNTS-PRISPDGKLLAYISRVGGAFKLYVQDL 359 (427)
T ss_pred CceEE-E-ecCC-----------------------------------CCcCc-eEECCCCCEEEEEEccCCcEEEEEEEC
Confidence 22111 0 0000 00111 36889999999877654 5999998
Q ss_pred CCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCC---cEEEEeCCCCeEEEEecCCCCCeEEEEEcCC
Q 037288 405 RLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDC---KLRIWSIRSGELVFEDKFSNSVPSAVCWRTQ 474 (513)
Q Consensus 405 ~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg---~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~ 474 (513)
. .+....+..+. ... ...|+|||+.|+.++.++ .+.+.++ ++.....+..+.+.+...+|+|-
T Consensus 360 ~---~g~~~~lt~~~-~~~--~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 360 A---TGQVTALTDTT-RDE--SPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred C---CCCeEEccCCC-Ccc--CceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence 5 33333343222 222 378999999988877644 3555566 46656666556667788888875
No 229
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.15 E-value=6.7e-09 Score=105.60 Aligned_cols=180 Identities=9% Similarity=0.034 Sum_probs=119.0
Q ss_pred eccccCcEEEEEEcCCCCEEEEEeC----CeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEE-EEeCCC--eEEEEE
Q 037288 252 VASFKCTVWTADFCTNPSQAVIGTN----LGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVL-CGFRNG--AIVTVD 324 (513)
Q Consensus 252 ~~~h~~~V~~~~~s~~g~~l~s~s~----~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~-sg~~dg--~i~iwd 324 (513)
+..+...+...+|+|||++|+.+.. ..|.+||+.+++......+...+.+++|+|||+.|+ +.+.++ .|++||
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d 264 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMD 264 (417)
T ss_pred eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEE
Confidence 5556678899999999999986642 249999999987666555666678899999997655 455444 588889
Q ss_pred CCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEec-CC--eEEE
Q 037288 325 VRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSM-DG--TVKL 401 (513)
Q Consensus 325 ~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~-dg--~i~l 401 (513)
+.++... .+..+...... ..|+++++.|+..+. ++ .|.+
T Consensus 265 ~~~~~~~----~l~~~~~~~~~----------------------------------~~~s~dg~~l~~~s~~~g~~~iy~ 306 (417)
T TIGR02800 265 LDGKQLT----RLTNGPGIDTE----------------------------------PSWSPDGKSIAFTSDRGGSPQIYM 306 (417)
T ss_pred CCCCCEE----ECCCCCCCCCC----------------------------------EEECCCCCEEEEEECCCCCceEEE
Confidence 8766432 22222111111 256789988876654 33 5777
Q ss_pred EecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCC---cEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCc
Q 037288 402 YDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDC---KLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRS 476 (513)
Q Consensus 402 wd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg---~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~ 476 (513)
+|+. ......+..+...... ..|+|+|++|+.++.++ .|.+||+.++.... +... .......|+|++.
T Consensus 307 ~d~~---~~~~~~l~~~~~~~~~--~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~~-~~~~~p~~spdg~ 377 (417)
T TIGR02800 307 MDAD---GGEVRRLTFRGGYNAS--PSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LTDT-GLDESPSFAPNGR 377 (417)
T ss_pred EECC---CCCEEEeecCCCCccC--eEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE-ccCC-CCCCCceECCCCC
Confidence 7764 2333344433333333 78999999999888776 79999998865433 2222 2234568999954
No 230
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.15 E-value=1.2e-08 Score=103.96 Aligned_cols=177 Identities=10% Similarity=0.047 Sum_probs=112.5
Q ss_pred eccccCcEEEEEEcCCCCEEEEE-e-CC--eEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEe-CCC--eEEEEE
Q 037288 252 VASFKCTVWTADFCTNPSQAVIG-T-NL--GAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGF-RNG--AIVTVD 324 (513)
Q Consensus 252 ~~~h~~~V~~~~~s~~g~~l~s~-s-~~--~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~-~dg--~i~iwd 324 (513)
+..+...+...+|+|||+.|+.. + ++ .|.+||+.++....+..+........|+|||+.|+..+ .+| .|+++|
T Consensus 241 l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d 320 (435)
T PRK05137 241 VGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMN 320 (435)
T ss_pred eecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEE
Confidence 44556677889999999987644 3 22 38888999888766666666678899999998776655 333 677788
Q ss_pred CCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecC---CeEEE
Q 037288 325 VRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMD---GTVKL 401 (513)
Q Consensus 325 ~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~d---g~i~l 401 (513)
+..+.... +..+. ..... ..|+|+|+.|+..+.+ ..|.+
T Consensus 321 ~~g~~~~~----lt~~~---------------------------------~~~~~-~~~SpdG~~ia~~~~~~~~~~i~~ 362 (435)
T PRK05137 321 ADGSNPRR----ISFGG---------------------------------GRYST-PVWSPRGDLIAFTKQGGGQFSIGV 362 (435)
T ss_pred CCCCCeEE----eecCC---------------------------------CcccC-eEECCCCCEEEEEEcCCCceEEEE
Confidence 76554221 11111 11111 3678999999877654 35778
Q ss_pred EecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCC------CcEEEEeCCCCeEEEEecCCCCCeEEEEEcCC
Q 037288 402 YDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGED------CKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQ 474 (513)
Q Consensus 402 wd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~D------g~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~ 474 (513)
||+. .+....+.. ...+.. ..|+|||++|+..+.+ ..++++|+..++. ..+.. ...+...+|+|-
T Consensus 363 ~d~~---~~~~~~lt~-~~~~~~--p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~-~~~~~~p~Wsp~ 433 (435)
T PRK05137 363 MKPD---GSGERILTS-GFLVEG--PTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPT-PGDASDPAWSPL 433 (435)
T ss_pred EECC---CCceEeccC-CCCCCC--CeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEccC-CCCccCcccCCC
Confidence 8873 333333332 112233 7899999998765543 2588888876655 34433 334677788774
No 231
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.13 E-value=4.7e-09 Score=94.36 Aligned_cols=220 Identities=11% Similarity=0.071 Sum_probs=135.8
Q ss_pred ccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEE-eCCeEEEEECCCCcEEE--Eee-
Q 037288 219 SETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIG-TNLGAAMVDMETGMASW--VCR- 294 (513)
Q Consensus 219 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~-s~~~i~vwd~~~~~~~~--~~~- 294 (513)
.+...|++.++............++.... + ......+++|++.+..++++ +++.+.+-+........ ..+
T Consensus 90 ~a~a~G~i~~~r~~~~~ss~~L~~ls~~k-i-----~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~ 163 (339)
T KOG0280|consen 90 DAHARGQIQLYRNDEDESSVHLRGLSSKK-I-----SVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKV 163 (339)
T ss_pred eccccceEEEEeeccceeeeeecccchhh-h-----hheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccc
Confidence 45567788777766433332222222111 0 00135688999988888877 55557655544443332 233
Q ss_pred eCCCeEEEEEecC-CcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeec
Q 037288 295 SKSDILAQQVIHS-GNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFM 373 (513)
Q Consensus 295 ~~~~V~~l~~~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~ 373 (513)
|.-+.+..+|+-. .+++++|+.|+.+..||+|.+.... .. ....|
T Consensus 164 He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i-~~---------------------------------n~kvH 209 (339)
T KOG0280|consen 164 HEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI-WH---------------------------------NSKVH 209 (339)
T ss_pred cceeeeeeecccCCCceEEecCCCceEEEEEecCCccee-ee---------------------------------cceee
Confidence 7778888899854 4899999999999999999554211 11 12334
Q ss_pred CCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCC-EEEEEeCCCcEEEEeCCC
Q 037288 374 PSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSER-FVMSGGEDCKLRIWSIRS 452 (513)
Q Consensus 374 ~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~-~l~sg~~Dg~v~vwd~~~ 452 (513)
..+|+++..-.|.+.++++|+.|..|++||.|... +++..-. -.+.|. ++..+|.-. .|+.++.-.-.+|-++..
T Consensus 210 ~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~-kPl~~~~-v~GGVW--Ri~~~p~~~~~lL~~CMh~G~ki~~~~~ 285 (339)
T KOG0280|consen 210 TSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG-KPLFKAK-VGGGVW--RIKHHPEIFHRLLAACMHNGAKILDSSD 285 (339)
T ss_pred ecceEEEecCCCCCceEEEeccccceeeeehhccc-CccccCc-cccceE--EEEecchhhhHHHHHHHhcCceEEEecc
Confidence 56677777777889999999999999999998432 2443222 124554 477777532 233334444467777655
Q ss_pred Ce-----EEEEecCCCCCeEEEEEcCCCceEEeeC
Q 037288 453 GE-----LVFEDKFSNSVPSAVCWRTQRSMGPQIE 482 (513)
Q Consensus 453 ~~-----~~~~~~~~~~~v~~v~~~p~~~~~~t~~ 482 (513)
+. .+...+.|.+-+..-.|.....++||++
T Consensus 286 ~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCs 320 (339)
T KOG0280|consen 286 KVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCS 320 (339)
T ss_pred cccchheeeeccccccceeeccccccccceeeeee
Confidence 43 3344566776666666754456788865
No 232
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.10 E-value=1.6e-08 Score=106.81 Aligned_cols=254 Identities=17% Similarity=0.182 Sum_probs=143.9
Q ss_pred eeeEEeccccCeEEEEEeecccccccceeEEeeeccccccccccccccCCCCCccccCcceeeecccceEEEecCCCCcc
Q 037288 123 TDVLLTGSVNGFFSLFEVGNVGQHAHDTVKFIPSCVWPRIKDNKTESSKAPEHIWRLNKASILMPSSVSCIKLFGKHPSC 202 (513)
Q Consensus 123 ~~~l~tg~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~s~i~si~~~~~~~~~ 202 (513)
.+++++|+.||+|++|+..+-.... ... -....|+|. .+.+.++.+.+..
T Consensus 1061 ~s~FvsgS~DGtVKvW~~~k~~~~~-~s~--------------------rS~ltys~~------~sr~~~vt~~~~~--- 1110 (1431)
T KOG1240|consen 1061 TSLFVSGSDDGTVKVWNLRKLEGEG-GSA--------------------RSELTYSPE------GSRVEKVTMCGNG--- 1110 (1431)
T ss_pred CceEEEecCCceEEEeeehhhhcCc-cee--------------------eeeEEEecc------CCceEEEEeccCC---
Confidence 3789999999999999984432110 000 111223322 3445555554433
Q ss_pred ccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcC-CCC-EEEEEeC-CeE
Q 037288 203 ATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCT-NPS-QAVIGTN-LGA 279 (513)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~-~g~-~l~s~s~-~~i 279 (513)
...+ .+..+|.+.++.++............ .+..+......|..-+|.. .+. .++.+.+ ++|
T Consensus 1111 -------~~~A-----v~t~DG~v~~~~id~~~~~~~~~~~~---ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~i 1175 (1431)
T KOG1240|consen 1111 -------DQFA-----VSTKDGSVRVLRIDHYNVSKRVATQV---RIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRI 1175 (1431)
T ss_pred -------CeEE-----EEcCCCeEEEEEccccccccceeeee---ecccccCCCceEEeecccccccceeEEEEEeccce
Confidence 1221 12568888888777532211110000 0111222222344444433 233 5555554 559
Q ss_pred EEEECCCCcEEEEee---eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEe
Q 037288 280 AMVDMETGMASWVCR---SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNE 356 (513)
Q Consensus 280 ~vwd~~~~~~~~~~~---~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~ 356 (513)
..||+......+..+ .++.|++++.+|.+++++.|+..|.+.+||+|-+..+. .--..+..++..+..++
T Consensus 1176 v~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~--sw~~P~~~~i~~v~~~~----- 1248 (1431)
T KOG1240|consen 1176 VSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPIL--SWEHPARAPIRHVWLCP----- 1248 (1431)
T ss_pred EEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceee--cccCcccCCcceEEeec-----
Confidence 999999887666665 45679999999999999999999999999999776532 11122335555543322
Q ss_pred EeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEe--cCCeEEEEecCCCCccceEEecCC----------------
Q 037288 357 QWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASS--MDGTVKLYDHRLTTRGAVQSYEGH---------------- 418 (513)
Q Consensus 357 ~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s--~dg~i~lwd~~~~~~~~~~~~~~h---------------- 418 (513)
+.+.....++++ ..+.|.+|++... .+-.++-..
T Consensus 1249 --------------------------~~~~~S~~vs~~~~~~nevs~wn~~~g--~~~~vl~~s~~~p~ls~~~Ps~~~~ 1300 (1431)
T KOG1240|consen 1249 --------------------------TYPQESVSVSAGSSSNNEVSTWNMETG--LRQTVLWASDGAPILSYALPSNDAR 1300 (1431)
T ss_pred --------------------------cCCCCceEEEecccCCCceeeeecccC--cceEEEEcCCCCcchhhhcccccCC
Confidence 223334444443 4677888988532 122222111
Q ss_pred -CCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE
Q 037288 419 -VNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELV 456 (513)
Q Consensus 419 -~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~ 456 (513)
...+.....++...+.++++|+.|..|+.||....+..
T Consensus 1301 kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1301 KPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred CCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence 11222222444445678999999999999998776544
No 233
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.09 E-value=8.6e-09 Score=96.16 Aligned_cols=202 Identities=13% Similarity=0.109 Sum_probs=143.8
Q ss_pred cccCcEEEEEEcCCCCEEEEEeCCeEEEEECCCCc----EEEEeeeCCCeEEEEEecCC-cEEEEEeCC--CeEEEEECC
Q 037288 254 SFKCTVWTADFCTNPSQAVIGTNLGAAMVDMETGM----ASWVCRSKSDILAQQVIHSG-NVVLCGFRN--GAIVTVDVR 326 (513)
Q Consensus 254 ~h~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~----~~~~~~~~~~V~~l~~~~~~-~~l~sg~~d--g~i~iwd~~ 326 (513)
....+|..++.. |+.++++-+++.+.+|....+. ....+.....+..+.-++.. .++++|+.. ..+.+||+.
T Consensus 103 l~~~~I~gl~~~-dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle 181 (412)
T KOG3881|consen 103 LGTKSIKGLKLA-DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLE 181 (412)
T ss_pred cccccccchhhc-CCEEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecc
Confidence 344556665553 6666666677779999887443 23334445567777666644 677889998 899999998
Q ss_pred CCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcC-CCCEEEEEecCCeEEEEecC
Q 037288 327 KRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQL-YDQYFLASSMDGTVKLYDHR 405 (513)
Q Consensus 327 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~s~dg~i~lwd~~ 405 (513)
+.+.+...+.++...-. +..+--++.+.++++ ..+.||+++.-+.|++||.+
T Consensus 182 ~~~qiw~aKNvpnD~L~---------------------------LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~ 234 (412)
T KOG3881|consen 182 QSKQIWSAKNVPNDRLG---------------------------LRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTR 234 (412)
T ss_pred cceeeeeccCCCCcccc---------------------------ceeeeeeccceecCCCCCceEEEEecceeEEEecCc
Confidence 87543311222211110 011111222233332 16789999999999999998
Q ss_pred CCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEE-ecCCCCCeEEEEEcCCCceEEeeCCC
Q 037288 406 LTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFE-DKFSNSVPSAVCWRTQRSMGPQIEGK 484 (513)
Q Consensus 406 ~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~-~~~~~~~v~~v~~~p~~~~~~t~~~~ 484 (513)
. ++.++..|.--.+++++ +...|+|++|++|..-|.+..||++.++++.. +++-.+.|+++..+|...++|+++.|
T Consensus 235 ~-qRRPV~~fd~~E~~is~--~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLD 311 (412)
T KOG3881|consen 235 H-QRRPVAQFDFLENPISS--TGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLD 311 (412)
T ss_pred c-cCcceeEeccccCccee--eeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccc
Confidence 3 34489888877888877 67789999999999999999999999998887 78888899999999999999999988
Q ss_pred ee
Q 037288 485 IH 486 (513)
Q Consensus 485 ~~ 486 (513)
-.
T Consensus 312 Ry 313 (412)
T KOG3881|consen 312 RY 313 (412)
T ss_pred ee
Confidence 65
No 234
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.08 E-value=4.1e-08 Score=100.13 Aligned_cols=184 Identities=9% Similarity=0.016 Sum_probs=116.1
Q ss_pred EeccccCcEEEEEEcCCCCEEEEEeCC----eEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEE-EEeCCC--eEEEE
Q 037288 251 LVASFKCTVWTADFCTNPSQAVIGTNL----GAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVL-CGFRNG--AIVTV 323 (513)
Q Consensus 251 ~~~~h~~~V~~~~~s~~g~~l~s~s~~----~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~-sg~~dg--~i~iw 323 (513)
.+..+...+....|+|||+.|+..+.. .|.+||+.+++...+....+.+.+..|+|||+.|+ +...+| .|++|
T Consensus 193 ~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~ 272 (430)
T PRK00178 193 TLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVM 272 (430)
T ss_pred EEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEE
Confidence 355667789999999999998865422 38899999988766555555567899999998665 555555 68888
Q ss_pred ECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEec-CC--eEE
Q 037288 324 DVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSM-DG--TVK 400 (513)
Q Consensus 324 d~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~-dg--~i~ 400 (513)
|+.++... .+..+...... ..|+|+|+.|+..+. +| .|.
T Consensus 273 d~~~~~~~----~lt~~~~~~~~----------------------------------~~~spDg~~i~f~s~~~g~~~iy 314 (430)
T PRK00178 273 DLASRQLS----RVTNHPAIDTE----------------------------------PFWGKDGRTLYFTSDRGGKPQIY 314 (430)
T ss_pred ECCCCCeE----EcccCCCCcCC----------------------------------eEECCCCCEEEEEECCCCCceEE
Confidence 99876532 22222211111 357889988776654 33 466
Q ss_pred EEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCC-C--cEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCce
Q 037288 401 LYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGED-C--KLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSM 477 (513)
Q Consensus 401 lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~D-g--~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~ 477 (513)
++|+. . +....+....... ....|+|+|++|+..+.+ + .|.+||+.+++... +.. ........|+|++.+
T Consensus 315 ~~d~~--~-g~~~~lt~~~~~~--~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~-~~~~~~p~~spdg~~ 387 (430)
T PRK00178 315 KVNVN--G-GRAERVTFVGNYN--ARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTD-TSLDESPSVAPNGTM 387 (430)
T ss_pred EEECC--C-CCEEEeecCCCCc--cceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccC-CCCCCCceECCCCCE
Confidence 66764 2 2222222111111 226789999999876653 3 58899998886533 322 122335689999544
Q ss_pred EE
Q 037288 478 GP 479 (513)
Q Consensus 478 ~~ 479 (513)
++
T Consensus 388 i~ 389 (430)
T PRK00178 388 LI 389 (430)
T ss_pred EE
Confidence 43
No 235
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.08 E-value=9.9e-09 Score=100.68 Aligned_cols=168 Identities=8% Similarity=0.041 Sum_probs=123.6
Q ss_pred CCCCEEEEE-eCCeEEEEECCCCcEEEEee----eCCCeEEEEEe------c--------------CCcEEEEEeCCCeE
Q 037288 266 TNPSQAVIG-TNLGAAMVDMETGMASWVCR----SKSDILAQQVI------H--------------SGNVVLCGFRNGAI 320 (513)
Q Consensus 266 ~~g~~l~s~-s~~~i~vwd~~~~~~~~~~~----~~~~V~~l~~~------~--------------~~~~l~sg~~dg~i 320 (513)
|...++|.. +|+.+++||...++...-+. ..+..++..|. | |-.+++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 345678866 55669999999887655443 22334444442 1 23478888889999
Q ss_pred EEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEE
Q 037288 321 VTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVK 400 (513)
Q Consensus 321 ~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~ 400 (513)
.+|++..++... ...-..|.+.|.++ ..+.+-.+|.+++.|+.+.
T Consensus 83 ~~ys~~~g~it~-~~st~~h~~~v~~~----------------------------------~~~~~~~ciyS~~ad~~v~ 127 (541)
T KOG4547|consen 83 LLYSVAGGEITA-KLSTDKHYGNVNEI----------------------------------LDAQRLGCIYSVGADLKVV 127 (541)
T ss_pred EEEEecCCeEEE-EEecCCCCCcceee----------------------------------ecccccCceEecCCceeEE
Confidence 999998887543 11223455555553 3344667899999999999
Q ss_pred EEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCC
Q 037288 401 LYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQ 474 (513)
Q Consensus 401 lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~ 474 (513)
.|+.. ....+..+.+....+.. ++++|||+.|++++. .|++||+.+++.+..|.+|.++|++++|...
T Consensus 128 ~~~~~--~~~~~~~~~~~~~~~~s--l~is~D~~~l~~as~--~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~ 195 (541)
T KOG4547|consen 128 YILEK--EKVIIRIWKEQKPLVSS--LCISPDGKILLTASR--QIKVLDIETKEVVITFTGHGSPVRTLSFTTL 195 (541)
T ss_pred EEecc--cceeeeeeccCCCccce--EEEcCCCCEEEeccc--eEEEEEccCceEEEEecCCCcceEEEEEEEe
Confidence 99986 44467777776666655 888999999998875 5999999999999999999999999999876
No 236
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.04 E-value=6e-08 Score=98.83 Aligned_cols=208 Identities=12% Similarity=0.039 Sum_probs=128.3
Q ss_pred eccccCcEEEEEEcCCCCEEEEEeC--C--eEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEE-EEeCCCe--EEEEE
Q 037288 252 VASFKCTVWTADFCTNPSQAVIGTN--L--GAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVL-CGFRNGA--IVTVD 324 (513)
Q Consensus 252 ~~~h~~~V~~~~~s~~g~~l~s~s~--~--~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~-sg~~dg~--i~iwd 324 (513)
+..+...+....|+|||+.|+..++ + .|.+||+.+++...+..........+|+|||+.|+ +.+.+|. |+++|
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d 292 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVD 292 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEE
Confidence 4455678899999999998886542 2 38889999887655444444456889999998665 5566665 77778
Q ss_pred CCCCccccccccccccCcCeEEEeeCC---eEEEeE----------eecccCcccceeEee-cCCCceEEEEEcCCCCEE
Q 037288 325 VRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ----------WFELKANIWPSHTTF-MPSSISCLQSLQLYDQYF 390 (513)
Q Consensus 325 ~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~----------w~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l 390 (513)
+.+++ ...+..+........|+| .++..+ ++...++. ..+. ....... ..++|+|++|
T Consensus 293 l~tg~----~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~---~~Lt~~g~~~~~-~~~SpDG~~l 364 (448)
T PRK04792 293 IATKA----LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV---SRLTFEGEQNLG-GSITPDGRSM 364 (448)
T ss_pred CCCCC----eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE---EEEecCCCCCcC-eeECCCCCEE
Confidence 87665 334555555667778888 333322 23323321 1111 1111122 3689999998
Q ss_pred EEEec-CCe--EEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeC-CC--cEEEEeCCCCeEEEEecCCCC
Q 037288 391 LASSM-DGT--VKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGE-DC--KLRIWSIRSGELVFEDKFSNS 464 (513)
Q Consensus 391 ~s~s~-dg~--i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~-Dg--~v~vwd~~~~~~~~~~~~~~~ 464 (513)
+..+. ++. |.++|+. .+....+..... . ....|+|+|+.|+..+. +| .+++++. +|.....+..+.+
T Consensus 365 ~~~~~~~g~~~I~~~dl~---~g~~~~lt~~~~-d--~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g 437 (448)
T PRK04792 365 IMVNRTNGKFNIARQDLE---TGAMQVLTSTRL-D--ESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQG 437 (448)
T ss_pred EEEEecCCceEEEEEECC---CCCeEEccCCCC-C--CCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCC
Confidence 87665 343 4556764 233333332211 1 12478999998876554 33 3777786 5666666665556
Q ss_pred CeEEEEEcCC
Q 037288 465 VPSAVCWRTQ 474 (513)
Q Consensus 465 ~v~~v~~~p~ 474 (513)
.+...+|+|-
T Consensus 438 ~~~~p~Wsp~ 447 (448)
T PRK04792 438 EVKSPAWSPF 447 (448)
T ss_pred CcCCCccCCC
Confidence 6778888874
No 237
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.02 E-value=1.3e-09 Score=105.52 Aligned_cols=164 Identities=11% Similarity=0.089 Sum_probs=117.2
Q ss_pred EEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeE
Q 037288 291 WVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHT 370 (513)
Q Consensus 291 ~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~ 370 (513)
.+.+|.+-|.|++|+.+|.+|++|+.|-.+.|||.-..+... ..-.+|...|.++.|-|
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kllh--sI~TgHtaNIFsvKFvP------------------- 103 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLH--SISTGHTANIFSVKFVP------------------- 103 (758)
T ss_pred hhccccceecceeecCCCCEEeecCCcceEEeecchhcceee--eeecccccceeEEeeec-------------------
Confidence 345688999999999999999999999999999998665432 34468888888877744
Q ss_pred eecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCc--------cceEEecCCCCceeEEEEEEcCCC-CEEEEEeC
Q 037288 371 TFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTR--------GAVQSYEGHVNSHTRIQLGVDQSE-RFVMSGGE 441 (513)
Q Consensus 371 ~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~--------~~~~~~~~h~~~v~~~~~~~s~~g-~~l~sg~~ 441 (513)
..+...+++|..|..|+++|+...+. .....+..|.+.|.. ++..|++ ..+.++++
T Consensus 104 -------------~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKr--ia~~p~~PhtfwsasE 168 (758)
T KOG1310|consen 104 -------------YTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKR--IATAPNGPHTFWSASE 168 (758)
T ss_pred -------------cCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhh--eecCCCCCceEEEecC
Confidence 12567888999999999999963211 145566788888877 6777887 77899999
Q ss_pred CCcEEEEeCCCCeEEE-------Ee-cCC--CCCeEEEEEcCC-CceEEeeCCC-eeeeec
Q 037288 442 DCKLRIWSIRSGELVF-------ED-KFS--NSVPSAVCWRTQ-RSMGPQIEGK-IHEEFD 490 (513)
Q Consensus 442 Dg~v~vwd~~~~~~~~-------~~-~~~--~~~v~~v~~~p~-~~~~~t~~~~-~~~~~~ 490 (513)
||+|+-+|++...... .+ ..+ --...++..+|. ..+||-++.+ +.+.+|
T Consensus 169 DGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD 229 (758)
T KOG1310|consen 169 DGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYD 229 (758)
T ss_pred CcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhh
Confidence 9999999998743111 11 111 123567888998 3444444443 334333
No 238
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.99 E-value=6.4e-07 Score=88.43 Aligned_cols=242 Identities=9% Similarity=0.056 Sum_probs=137.6
Q ss_pred CCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEEeeeCCCeE
Q 037288 222 TGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWVCRSKSDIL 300 (513)
Q Consensus 222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~~~~~~~V~ 300 (513)
..|.+.+.+..+... +..+......-..+.++|||+++.+++ |+.|.++|+.+++.+..+.......
T Consensus 14 ~~~~v~viD~~t~~~------------~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~ 81 (369)
T PF02239_consen 14 GSGSVAVIDGATNKV------------VARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPR 81 (369)
T ss_dssp GGTEEEEEETTT-SE------------EEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEE
T ss_pred CCCEEEEEECCCCeE------------EEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcc
Confidence 456777777654332 233444333345578999999887665 5669999999999999888777889
Q ss_pred EEEEecCCcEEEEEe-CCCeEEEEECCCCccccccccccc-------cCcCeEEEeeCC---eEEEeE------eecccC
Q 037288 301 AQQVIHSGNVVLCGF-RNGAIVTVDVRKRQRGCSSRAGRR-------HRIPYSRLQRND---RVTNEQ------WFELKA 363 (513)
Q Consensus 301 ~l~~~~~~~~l~sg~-~dg~i~iwd~~~~~~~~~~~~~~~-------h~~~v~~v~~~~---~~~s~~------w~~~~~ 363 (513)
++++++||++++++. .++.+.++|.++.+... .+.. ....+.+|-.++ .++..- |.+...
T Consensus 82 ~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~---~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~ 158 (369)
T PF02239_consen 82 GIAVSPDGKYVYVANYEPGTVSVIDAETLEPVK---TIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYS 158 (369)
T ss_dssp EEEE--TTTEEEEEEEETTEEEEEETTT--EEE---EEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETT
T ss_pred eEEEcCCCCEEEEEecCCCceeEecccccccee---ecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEec
Confidence 999999999888775 58999999999877643 3222 233455555444 333332 544322
Q ss_pred cccc--eeEeecCCCceEEEEEcCCCCEEEEE-ecCCeEEEEecCCC---------------------------------
Q 037288 364 NIWP--SHTTFMPSSISCLQSLQLYDQYFLAS-SMDGTVKLYDHRLT--------------------------------- 407 (513)
Q Consensus 364 ~~~~--~~~~~~~~~v~~~~~~~~~~~~l~s~-s~dg~i~lwd~~~~--------------------------------- 407 (513)
...+ ...+........ ..++|++++|+++ ..++.|-++|....
T Consensus 159 d~~~~~~~~i~~g~~~~D-~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~ 237 (369)
T PF02239_consen 159 DPKNLKVTTIKVGRFPHD-GGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSG 237 (369)
T ss_dssp TSSCEEEEEEE--TTEEE-EEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEB
T ss_pred cccccceeeecccccccc-cccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeecc
Confidence 2222 223333333333 4788999988765 34667777776521
Q ss_pred --------------------CccceEEecCCCCceeEEEEEEcCCCCEEEEE----eCCCcEEEEeCCCCeEEEEecCC-
Q 037288 408 --------------------TRGAVQSYEGHVNSHTRIQLGVDQSERFVMSG----GEDCKLRIWSIRSGELVFEDKFS- 462 (513)
Q Consensus 408 --------------------~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg----~~Dg~v~vwd~~~~~~~~~~~~~- 462 (513)
..+.++++...... +-+..+|++++|.+. ...++|.++|..+.+.+..+...
T Consensus 238 ~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g---lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~ 314 (369)
T PF02239_consen 238 LGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG---LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGP 314 (369)
T ss_dssp SSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS-----EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHH
T ss_pred ccceecccccCCccccchhhcCeEEEEEECCCCc---ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccC
Confidence 00011222211111 114568999999887 44589999999999988887532
Q ss_pred CCCeEEEEEcCCCc-eEEeeC
Q 037288 463 NSVPSAVCWRTQRS-MGPQIE 482 (513)
Q Consensus 463 ~~~v~~v~~~p~~~-~~~t~~ 482 (513)
...+..+.|++++. +++|.-
T Consensus 315 ~~~~~h~ef~~dG~~v~vS~~ 335 (369)
T PF02239_consen 315 GKRVVHMEFNPDGKEVWVSVW 335 (369)
T ss_dssp T--EEEEEE-TTSSEEEEEEE
T ss_pred CCcEeccEECCCCCEEEEEEe
Confidence 23588999999953 444443
No 239
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.99 E-value=7.8e-08 Score=86.65 Aligned_cols=206 Identities=13% Similarity=0.108 Sum_probs=135.6
Q ss_pred CCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcC---CCC-EEEEE-eCCeEEEEECCCCcEEEEee--
Q 037288 222 TGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCT---NPS-QAVIG-TNLGAAMVDMETGMASWVCR-- 294 (513)
Q Consensus 222 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~---~g~-~l~s~-s~~~i~vwd~~~~~~~~~~~-- 294 (513)
..|.+.+|++.+..... . ....+.-+..+..+.|+. +|. .++-+ +.+.|.++..........++
T Consensus 44 R~Gkl~Lys~~d~~~~~-------l--~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~l 114 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSP-------L--DTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGL 114 (339)
T ss_pred eccceEEEeecccccCc-------c--ceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeeccc
Confidence 35667777766433321 0 111223345666777753 455 22222 55667777654333222222
Q ss_pred --e---CCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCccccee
Q 037288 295 --S---KSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSH 369 (513)
Q Consensus 295 --~---~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~ 369 (513)
. .....++.|++.+.-++++..+|.+.+-+........ ++..++|.-+.+...|+.
T Consensus 115 s~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~-vq~wk~He~E~Wta~f~~------------------ 175 (339)
T KOG0280|consen 115 SSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEK-VQTWKVHEFEAWTAKFSD------------------ 175 (339)
T ss_pred chhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeee-cccccccceeeeeeeccc------------------
Confidence 0 1124688899999889999999999976665554433 567888888777765532
Q ss_pred EeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceE-EecCCCCceeEEEEEEc-CCCCEEEEEeCCCcEEE
Q 037288 370 TTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQ-SYEGHVNSHTRIQLGVD-QSERFVMSGGEDCKLRI 447 (513)
Q Consensus 370 ~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~-~~~~h~~~v~~~~~~~s-~~g~~l~sg~~Dg~v~v 447 (513)
.+.+.+.+|+.|+.+..||+|.+. ..+. ..+.|...|.+ +.-+ |.+.+|++|+.|-.|++
T Consensus 176 ---------------~~pnlvytGgDD~~l~~~D~R~p~-~~i~~n~kvH~~GV~S--I~ss~~~~~~I~TGsYDe~i~~ 237 (339)
T KOG0280|consen 176 ---------------KEPNLVYTGGDDGSLSCWDIRIPK-TFIWHNSKVHTSGVVS--IYSSPPKPTYIATGSYDECIRV 237 (339)
T ss_pred ---------------CCCceEEecCCCceEEEEEecCCc-ceeeecceeeecceEE--EecCCCCCceEEEeccccceee
Confidence 245789999999999999999433 3333 34568877766 3333 46889999999999999
Q ss_pred EeCC-CCeEEEEecCCCCCeEEEEEcCC
Q 037288 448 WSIR-SGELVFEDKFSNSVPSAVCWRTQ 474 (513)
Q Consensus 448 wd~~-~~~~~~~~~~~~~~v~~v~~~p~ 474 (513)
||.+ -++++..-.. .+.|..++++|.
T Consensus 238 ~DtRnm~kPl~~~~v-~GGVWRi~~~p~ 264 (339)
T KOG0280|consen 238 LDTRNMGKPLFKAKV-GGGVWRIKHHPE 264 (339)
T ss_pred eehhcccCccccCcc-ccceEEEEecch
Confidence 9999 4778776544 466999999986
No 240
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.99 E-value=1.7e-07 Score=94.85 Aligned_cols=190 Identities=9% Similarity=-0.001 Sum_probs=113.3
Q ss_pred ccccCcEEEEEEcCCCCE--EE-EEe-CC--eEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEe-CCC----eEE
Q 037288 253 ASFKCTVWTADFCTNPSQ--AV-IGT-NL--GAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGF-RNG----AIV 321 (513)
Q Consensus 253 ~~h~~~V~~~~~s~~g~~--l~-s~s-~~--~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~-~dg----~i~ 321 (513)
......+..-.|+|||+. ++ +.. ++ .|.+.++.+++...+....+.....+|+|||+.|+..+ .+| .+.
T Consensus 181 t~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~ 260 (428)
T PRK01029 181 TQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQ 260 (428)
T ss_pred ccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEE
Confidence 334456678899999975 32 232 22 38888999888766666666677899999997666543 233 334
Q ss_pred EEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEe-cCCeEE
Q 037288 322 TVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASS-MDGTVK 400 (513)
Q Consensus 322 iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s-~dg~i~ 400 (513)
.||+..+.... ...+.. ....+..-..|+|+|+.|+..+ .+|...
T Consensus 261 ~~~~~~g~~g~-~~~lt~---------------------------------~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ 306 (428)
T PRK01029 261 SFSLETGAIGK-PRRLLN---------------------------------EAFGTQGNPSFSPDGTRLVFVSNKDGRPR 306 (428)
T ss_pred EeecccCCCCc-ceEeec---------------------------------CCCCCcCCeEECCCCCEEEEEECCCCCce
Confidence 46665431100 001110 0001111136889999888665 466656
Q ss_pred EEecCCCCc-cceEEecCCCCceeEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCc
Q 037288 401 LYDHRLTTR-GAVQSYEGHVNSHTRIQLGVDQSERFVMSGGED---CKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRS 476 (513)
Q Consensus 401 lwd~~~~~~-~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~D---g~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~ 476 (513)
+|.+..... +....+..+...+.. ..|+|||++|+..+.+ ..|++||+.+++.... ......+....|+|++.
T Consensus 307 ly~~~~~~~g~~~~~lt~~~~~~~~--p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~L-t~~~~~~~~p~wSpDG~ 383 (428)
T PRK01029 307 IYIMQIDPEGQSPRLLTKKYRNSSC--PAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQL-TTSPENKESPSWAIDSL 383 (428)
T ss_pred EEEEECcccccceEEeccCCCCccc--eeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEc-cCCCCCccceEECCCCC
Confidence 664431111 234444444333333 7899999998876543 4699999998876443 33334567899999965
Q ss_pred eEE
Q 037288 477 MGP 479 (513)
Q Consensus 477 ~~~ 479 (513)
.++
T Consensus 384 ~L~ 386 (428)
T PRK01029 384 HLV 386 (428)
T ss_pred EEE
Confidence 433
No 241
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.99 E-value=1.7e-07 Score=94.77 Aligned_cols=177 Identities=8% Similarity=0.008 Sum_probs=105.7
Q ss_pred cCcEEEEEEcCCCCEEEEEeC--C--e--EEEEECCCC---cEEEEeeeC-CCeEEEEEecCCcEEEEE-eCCCeEEEEE
Q 037288 256 KCTVWTADFCTNPSQAVIGTN--L--G--AAMVDMETG---MASWVCRSK-SDILAQQVIHSGNVVLCG-FRNGAIVTVD 324 (513)
Q Consensus 256 ~~~V~~~~~s~~g~~l~s~s~--~--~--i~vwd~~~~---~~~~~~~~~-~~V~~l~~~~~~~~l~sg-~~dg~i~iwd 324 (513)
.......+|+|||+.|+..++ + . +.+|++..+ ....+.... ......+|+|||+.|+.. ..+|...+|.
T Consensus 230 ~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~ 309 (428)
T PRK01029 230 QGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYI 309 (428)
T ss_pred CCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEE
Confidence 344567899999999886653 2 2 344777653 334444332 335678999999865554 4567555554
Q ss_pred --CCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecC---CeE
Q 037288 325 --VRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMD---GTV 399 (513)
Q Consensus 325 --~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~d---g~i 399 (513)
+...... ...+..+...+ . ...|+|+|+.|+..+.+ ..|
T Consensus 310 ~~~~~~g~~--~~~lt~~~~~~---------------------------------~-~p~wSPDG~~Laf~~~~~g~~~I 353 (428)
T PRK01029 310 MQIDPEGQS--PRLLTKKYRNS---------------------------------S-CPAWSPDGKKIAFCSVIKGVRQI 353 (428)
T ss_pred EECcccccc--eEEeccCCCCc---------------------------------c-ceeECCCCCEEEEEEcCCCCcEE
Confidence 4321110 11111111111 1 13678999998876653 468
Q ss_pred EEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeC---CCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCC
Q 037288 400 KLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGE---DCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQ 474 (513)
Q Consensus 400 ~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~---Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~ 474 (513)
.+||+. .+....+......+.. ..|+|||++|+.... +..|+++|+.+++...... ..+.+...+|+|.
T Consensus 354 ~v~dl~---~g~~~~Lt~~~~~~~~--p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~-~~g~~~~p~Ws~~ 425 (428)
T PRK01029 354 CVYDLA---TGRDYQLTTSPENKES--PSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVI-GSGEKRFPSWGAF 425 (428)
T ss_pred EEEECC---CCCeEEccCCCCCccc--eEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCcccCceecCC
Confidence 999985 3334444433223333 789999998875433 3578999998887654443 3455678888875
No 242
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.96 E-value=1.6e-07 Score=95.34 Aligned_cols=194 Identities=12% Similarity=0.013 Sum_probs=118.7
Q ss_pred eEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEe---CCCeEEEEECCCCccccccccccccCcCeEEEeeCC---
Q 037288 278 GAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGF---RNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND--- 351 (513)
Q Consensus 278 ~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~---~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~--- 351 (513)
.|.+||........+..+...+.+.+|+|||+.|+..+ .+..|.+||+.+++... +..+.++ +....|+|
T Consensus 180 ~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~---~~~~~~SPDG~ 255 (429)
T PRK03629 180 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRH---NGAPAFSPDGS 255 (429)
T ss_pred eEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCC---cCCeEECCCCC
Confidence 48889988766655566777899999999998777543 34679999998775433 3344444 44678988
Q ss_pred eEEEeE----------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecC-CeEEEEecCCCCccceEEecCCCC
Q 037288 352 RVTNEQ----------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMD-GTVKLYDHRLTTRGAVQSYEGHVN 420 (513)
Q Consensus 352 ~~~s~~----------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~d-g~i~lwd~~~~~~~~~~~~~~h~~ 420 (513)
.++... |+...+... ........+. ...|+|+|+.|+..+.+ +...||.+.. ..+....+..+..
T Consensus 256 ~La~~~~~~g~~~I~~~d~~tg~~~--~lt~~~~~~~-~~~wSPDG~~I~f~s~~~g~~~Iy~~d~-~~g~~~~lt~~~~ 331 (429)
T PRK03629 256 KLAFALSKTGSLNLYVMDLASGQIR--QVTDGRSNNT-EPTWFPDSQNLAYTSDQAGRPQVYKVNI-NGGAPQRITWEGS 331 (429)
T ss_pred EEEEEEcCCCCcEEEEEECCCCCEE--EccCCCCCcC-ceEECCCCCEEEEEeCCCCCceEEEEEC-CCCCeEEeecCCC
Confidence 333221 454444321 1111222233 35789999988877654 4555554321 2233344433333
Q ss_pred ceeEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCC
Q 037288 421 SHTRIQLGVDQSERFVMSGGED---CKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEG 483 (513)
Q Consensus 421 ~v~~~~~~~s~~g~~l~sg~~D---g~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~ 483 (513)
.... ..|+|||++|+..+.+ ..|++||+.+++.. .+.. ........|+|++.+++....
T Consensus 332 ~~~~--~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~-~~~~~~p~~SpDG~~i~~~s~ 393 (429)
T PRK03629 332 QNQD--ADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTD-TFLDETPSIAPNGTMVIYSSS 393 (429)
T ss_pred CccC--EEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCC-CCCCCCceECCCCCEEEEEEc
Confidence 3323 7899999998876553 35889999888744 3332 222456789999765555443
No 243
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.96 E-value=3.7e-08 Score=102.62 Aligned_cols=185 Identities=12% Similarity=0.073 Sum_probs=137.0
Q ss_pred cEEEEEEcCCCCEEE-EEeCCeEEEEECCCCcEEEEeeeCCCe-----EEEEEecCCcEEEEEeCCCeEEEEECCCCccc
Q 037288 258 TVWTADFCTNPSQAV-IGTNLGAAMVDMETGMASWVCRSKSDI-----LAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRG 331 (513)
Q Consensus 258 ~V~~~~~s~~g~~l~-s~s~~~i~vwd~~~~~~~~~~~~~~~V-----~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~ 331 (513)
.|....+.-+...++ ..+++.+.+||...+.......+...+ .-+.++++.-++++|+.-+.|.+|+..... .
T Consensus 89 wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn-~ 167 (967)
T KOG0974|consen 89 WIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN-K 167 (967)
T ss_pred cccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC-C
Confidence 333344444555555 446778999999887766666655442 222345666789999999999999998433 2
Q ss_pred cccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccc
Q 037288 332 CSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGA 411 (513)
Q Consensus 332 ~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~ 411 (513)
+ ..+.+|.+.|.++. ++.+|.++++.|+|.++++|++. +...
T Consensus 168 p--~~l~GHeG~iF~i~----------------------------------~s~dg~~i~s~SdDRsiRlW~i~--s~~~ 209 (967)
T KOG0974|consen 168 P--IRLKGHEGSIFSIV----------------------------------TSLDGRYIASVSDDRSIRLWPID--SREV 209 (967)
T ss_pred c--ceecccCCceEEEE----------------------------------EccCCcEEEEEecCcceeeeecc--cccc
Confidence 2 26889999888854 45699999999999999999997 4332
Q ss_pred -eEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCC-CCCeEEEEEcCCCceEEeeCCCee
Q 037288 412 -VQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFS-NSVPSAVCWRTQRSMGPQIEGKIH 486 (513)
Q Consensus 412 -~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~-~~~v~~v~~~p~~~~~~t~~~~~~ 486 (513)
..+.-+|...+.. ++|+|+ .++++++|.+.++|+. .++.+.++..| ...+..++.+++....+|.+.|-.
T Consensus 210 ~~~~~fgHsaRvw~--~~~~~n--~i~t~gedctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~ 281 (967)
T KOG0974|consen 210 LGCTGFGHSARVWA--CCFLPN--RIITVGEDCTCRVWGV-NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDST 281 (967)
T ss_pred cCcccccccceeEE--EEeccc--eeEEeccceEEEEEec-ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcc
Confidence 2355679988755 888887 8999999999999975 45555577666 456999999999888888887754
No 244
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.96 E-value=4e-09 Score=114.81 Aligned_cols=190 Identities=15% Similarity=0.195 Sum_probs=147.4
Q ss_pred eccccCcEEEEEEcCCCCEEEEE-eCCeEEEEECCCCcEEEEee--eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCC
Q 037288 252 VASFKCTVWTADFCTNPSQAVIG-TNLGAAMVDMETGMASWVCR--SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKR 328 (513)
Q Consensus 252 ~~~h~~~V~~~~~s~~g~~l~s~-s~~~i~vwd~~~~~~~~~~~--~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~ 328 (513)
+.-+-..|.++.-+|.-.+.++| +|+.|++|.-..++.+...+ ..+.|+.+.|+.+|+.+..+..||.+.+|... +
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-p 2282 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-P 2282 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-C
Confidence 44455688899999987777777 45669999998888776666 44679999999999999999999999999987 3
Q ss_pred ccccccccccccCcCeEEEeeCC-eEEEeE----------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCC
Q 037288 329 QRGCSSRAGRRHRIPYSRLQRND-RVTNEQ----------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDG 397 (513)
Q Consensus 329 ~~~~~~~~~~~h~~~v~~v~~~~-~~~s~~----------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg 397 (513)
+. +.....|........|-. .+++.+ ||.............|.++++++ .+-|..+.|++|+.+|
T Consensus 2283 k~---~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l-~~~P~~qllisggr~G 2358 (2439)
T KOG1064|consen 2283 KP---YTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVL-AYAPKHQLLISGGRKG 2358 (2439)
T ss_pred cc---eeccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEE-EEcCcceEEEecCCcC
Confidence 32 557788888887777744 222222 88766554444446677788886 7778999999999999
Q ss_pred eEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec
Q 037288 398 TVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDK 460 (513)
Q Consensus 398 ~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~ 460 (513)
.|++||+| +.+..++++. ++ ...++++|+..|.++||++....+++++.
T Consensus 2359 ~v~l~D~r--qrql~h~~~~-----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2359 EVCLFDIR--QRQLRHTFQA-----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred cEEEeehH--HHHHHHHhhh-----------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence 99999998 6666666653 23 46689999999999999999988887764
No 245
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.93 E-value=1.6e-08 Score=105.33 Aligned_cols=151 Identities=11% Similarity=0.096 Sum_probs=119.0
Q ss_pred EEEEEcCCCCEEEEEe-CCeEEEEECCC-CcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccc
Q 037288 260 WTADFCTNPSQAVIGT-NLGAAMVDMET-GMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAG 337 (513)
Q Consensus 260 ~~~~~s~~g~~l~s~s-~~~i~vwd~~~-~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~ 337 (513)
.-+-++++.-++++|+ -+.|.+|+... .....+..|.+.+.++.|+.||.++++.+.|.++++|++.+.+... .+.
T Consensus 137 ~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~--~~~ 214 (967)
T KOG0974|consen 137 LIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG--CTG 214 (967)
T ss_pred EEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC--ccc
Confidence 3344566777888885 56699998763 3355677799999999999999999999999999999999886422 256
Q ss_pred cccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecC
Q 037288 338 RRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEG 417 (513)
Q Consensus 338 ~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~ 417 (513)
-+|...|..+.| .++ .+++++.|.+.++|+.. ...+..|.+
T Consensus 215 fgHsaRvw~~~~----------------------------------~~n--~i~t~gedctcrvW~~~---~~~l~~y~~ 255 (967)
T KOG0974|consen 215 FGHSARVWACCF----------------------------------LPN--RIITVGEDCTCRVWGVN---GTQLEVYDE 255 (967)
T ss_pred ccccceeEEEEe----------------------------------ccc--eeEEeccceEEEEEecc---cceehhhhh
Confidence 677777777443 334 89999999999999873 445668888
Q ss_pred CCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 037288 418 HVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRS 452 (513)
Q Consensus 418 h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~ 452 (513)
|.... ...++.+++..++++++.|+.+++|++..
T Consensus 256 h~g~~-iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 256 HSGKG-IWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred hhhcc-eeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 87653 35588888889999999999999999864
No 246
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=2.4e-07 Score=90.51 Aligned_cols=224 Identities=13% Similarity=0.180 Sum_probs=143.2
Q ss_pred EEecCCCCccccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEecc-ccCcEEEEEEcCCCC-E
Q 037288 193 IKLFGKHPSCATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVAS-FKCTVWTADFCTNPS-Q 270 (513)
Q Consensus 193 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~~~~s~~g~-~ 270 (513)
|...+-....++-+|...++.+..-+.....+.+.+|........ -++ ..++ ....=-.+.|++-|. +
T Consensus 163 l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~---~~~-------a~ksFFkadkvqm~WN~~gt~L 232 (566)
T KOG2315|consen 163 LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQH---QPV-------ANKSFFKADKVQMKWNKLGTAL 232 (566)
T ss_pred eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccccccc---chh-------hhccccccceeEEEeccCCceE
Confidence 333444445555555555666666666677777777665411100 000 0111 112334567777665 3
Q ss_pred EEEE-e-----------CCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEE--EEEeCCCeEEEEECCCCcccccccc
Q 037288 271 AVIG-T-----------NLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVV--LCGFRNGAIVTVDVRKRQRGCSSRA 336 (513)
Q Consensus 271 l~s~-s-----------~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l--~sg~~dg~i~iwd~~~~~~~~~~~~ 336 (513)
|+.+ + +.++++.+++...+..-+...++|.++.|+++|.-+ +-|-+-.++.|||++..-
T Consensus 233 LvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~------- 305 (566)
T KOG2315|consen 233 LVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKP------- 305 (566)
T ss_pred EEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCE-------
Confidence 3222 2 234888888855565556678999999999999654 445567899999998542
Q ss_pred ccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecC---CeEEEEecCCCCccceE
Q 037288 337 GRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMD---GTVKLYDHRLTTRGAVQ 413 (513)
Q Consensus 337 ~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~d---g~i~lwd~~~~~~~~~~ 413 (513)
.+..+.+....+.|+|.|++++.++.+ |.|-+||.. ..+++.
T Consensus 306 ---------------------------------v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~--n~K~i~ 350 (566)
T KOG2315|consen 306 ---------------------------------VFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVP--NRKLIA 350 (566)
T ss_pred ---------------------------------eEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEecc--chhhcc
Confidence 111222333336889999999988864 889999997 555777
Q ss_pred EecCCCCceeEEEEEEcCCCCEEEEEeC------CCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCC
Q 037288 414 SYEGHVNSHTRIQLGVDQSERFVMSGGE------DCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQ 474 (513)
Q Consensus 414 ~~~~h~~~v~~~~~~~s~~g~~l~sg~~------Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~ 474 (513)
.+..-... . +.|+|||.+++++.. |+.++||+. +|.+++...... ....++|-|.
T Consensus 351 ~~~a~~tt--~--~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l~~~~f~s-EL~qv~W~P~ 411 (566)
T KOG2315|consen 351 KFKAANTT--V--FEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSLLHEKMFKS-ELLQVEWRPF 411 (566)
T ss_pred ccccCCce--E--EEEcCCCcEEEEEeccccEEecCCeEEEEe-cCceeehhhhhH-hHhheeeeec
Confidence 77754432 2 799999999998865 789999996 667666644322 5778888865
No 247
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.93 E-value=2.4e-08 Score=93.67 Aligned_cols=162 Identities=19% Similarity=0.209 Sum_probs=107.1
Q ss_pred cEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcE----EEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCcccc
Q 037288 258 TVWTADFCTNPSQAVIGT-NLGAAMVDMETGMA----SWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGC 332 (513)
Q Consensus 258 ~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~----~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~ 332 (513)
.++.+..+++++++|.+. ++...+++...... .....-...-+++.|..+...+..+..-|.++-+|+-+.....
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 556677788899998774 44555666554332 2222233344566666655555555445555555544322111
Q ss_pred ccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccce
Q 037288 333 SSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAV 412 (513)
Q Consensus 333 ~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~ 412 (513)
....-||-..+.. +.++||+++++++..|+.|++-... ....+
T Consensus 144 -~~~~lGhvSml~d----------------------------------VavS~D~~~IitaDRDEkIRvs~yp--a~f~I 186 (390)
T KOG3914|consen 144 -CEPILGHVSMLLD----------------------------------VAVSPDDQFIITADRDEKIRVSRYP--ATFVI 186 (390)
T ss_pred -cchhhhhhhhhhe----------------------------------eeecCCCCEEEEecCCceEEEEecC--cccch
Confidence 3456677776666 4567799999999999999988764 33355
Q ss_pred EEe-cCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEe
Q 037288 413 QSY-EGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFED 459 (513)
Q Consensus 413 ~~~-~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~ 459 (513)
..| -||...|..+++ - ++..|++||.|++|++||+.+|+++.++
T Consensus 187 esfclGH~eFVS~isl--~-~~~~LlS~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 187 ESFCLGHKEFVSTISL--T-DNYLLLSGSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred hhhccccHhheeeeee--c-cCceeeecCCCCcEEEEecccCCccccc
Confidence 555 479999887443 3 4556899999999999999999988764
No 248
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.91 E-value=6.5e-07 Score=91.31 Aligned_cols=173 Identities=13% Similarity=0.084 Sum_probs=107.0
Q ss_pred CcEEEEEEcCCCCEEEEE-e-CC--eEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEe-CCC--eEEEEECCCCc
Q 037288 257 CTVWTADFCTNPSQAVIG-T-NL--GAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGF-RNG--AIVTVDVRKRQ 329 (513)
Q Consensus 257 ~~V~~~~~s~~g~~l~s~-s-~~--~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~-~dg--~i~iwd~~~~~ 329 (513)
..+....|+|||+.|+.. . ++ .|.+||+.++....+..+........|+|||+.|+..+ .+| .|+++|+.+++
T Consensus 243 g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~ 322 (430)
T PRK00178 243 GLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR 322 (430)
T ss_pred CCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 345578999999988744 2 23 38889999988766555555577789999997665444 343 57777776654
Q ss_pred cccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecC-C--eEEEEecCC
Q 037288 330 RGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMD-G--TVKLYDHRL 406 (513)
Q Consensus 330 ~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~d-g--~i~lwd~~~ 406 (513)
... + ...+ .......++|+|+.++..+.+ + .|.++|+.
T Consensus 323 ~~~-l-t~~~------------------------------------~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~- 363 (430)
T PRK00178 323 AER-V-TFVG------------------------------------NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQ- 363 (430)
T ss_pred EEE-e-ecCC------------------------------------CCccceEECCCCCEEEEEEccCCceEEEEEECC-
Confidence 321 0 0000 011113678999999877653 3 47788885
Q ss_pred CCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCeEEEEecCCCCCeEEEEEcCC
Q 037288 407 TTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGED---CKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQ 474 (513)
Q Consensus 407 ~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~D---g~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~ 474 (513)
.+....+.. ..... ...|+|||++|+..+.+ ..|.++++.. .....+..+.+.+...+|+|.
T Consensus 364 --tg~~~~lt~-~~~~~--~p~~spdg~~i~~~~~~~g~~~l~~~~~~g-~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 364 --RGSVRILTD-TSLDE--SPSVAPNGTMLIYATRQQGRGVLMLVSING-RVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred --CCCEEEccC-CCCCC--CceECCCCCEEEEEEecCCceEEEEEECCC-CceEECcCCCCCcCCCccCCC
Confidence 333333332 11111 25799999998876654 3477777744 444445445556777788874
No 249
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.90 E-value=3.5e-05 Score=75.99 Aligned_cols=214 Identities=8% Similarity=0.041 Sum_probs=125.2
Q ss_pred cCcEEEEEEcCCCCEEEEEe--CCeEEEEECCC-CcEEE---Eeee-----------CCCeEEEEEecCCcEEEEEeC-C
Q 037288 256 KCTVWTADFCTNPSQAVIGT--NLGAAMVDMET-GMASW---VCRS-----------KSDILAQQVIHSGNVVLCGFR-N 317 (513)
Q Consensus 256 ~~~V~~~~~s~~g~~l~s~s--~~~i~vwd~~~-~~~~~---~~~~-----------~~~V~~l~~~~~~~~l~sg~~-d 317 (513)
...-..++++|++++|+++. ++.|.++++.. +.... ...+ .....++.|+|+|+++++... .
T Consensus 86 g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~ 165 (345)
T PF10282_consen 86 GSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGA 165 (345)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTT
T ss_pred CCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCC
Confidence 34556799999999998874 56699999986 44322 2211 234789999999987777643 4
Q ss_pred CeEEEEECCCCcccc-ccccc-cccCcCeEEEeeCC---eEEEeE--------eecc--cCcccceeEeecC------CC
Q 037288 318 GAIVTVDVRKRQRGC-SSRAG-RRHRIPYSRLQRND---RVTNEQ--------WFEL--KANIWPSHTTFMP------SS 376 (513)
Q Consensus 318 g~i~iwd~~~~~~~~-~~~~~-~~h~~~v~~v~~~~---~~~s~~--------w~~~--~~~~~~~~~~~~~------~~ 376 (513)
..|.+|++....... ....+ .......+.+.|+| .++... ++.. .+.+.....+... ..
T Consensus 166 D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~ 245 (345)
T PF10282_consen 166 DRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGEN 245 (345)
T ss_dssp TEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSS
T ss_pred CEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccC
Confidence 689999997765211 01112 12345567888888 222222 3333 4433333333221 11
Q ss_pred ceEEEEEcCCCCEEEEEec-CCeEEEEecCCCCcc--ceEEecCCCCceeEEEEEEcCCCCEEEEEeC-CCcEEEEeC--
Q 037288 377 ISCLQSLQLYDQYFLASSM-DGTVKLYDHRLTTRG--AVQSYEGHVNSHTRIQLGVDQSERFVMSGGE-DCKLRIWSI-- 450 (513)
Q Consensus 377 v~~~~~~~~~~~~l~s~s~-dg~i~lwd~~~~~~~--~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~-Dg~v~vwd~-- 450 (513)
..+-+.++|+|++|.++.. ++.|.+|++...... .+..+...... ...+.++|+|++|+++++ ++.|.+|++
T Consensus 246 ~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~--Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 246 APAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKF--PRHFAFSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp SEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSS--EEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred CceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCC--ccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence 2344578999999887664 678999999521111 33333321221 244889999999998875 568999866
Q ss_pred CCCeEEEEec-CCCCCeEEEEE
Q 037288 451 RSGELVFEDK-FSNSVPSAVCW 471 (513)
Q Consensus 451 ~~~~~~~~~~-~~~~~v~~v~~ 471 (513)
.+|.+...-. ..-....+|.|
T Consensus 324 ~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 324 DTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp TTTEEEEEEEEEESSSEEEEEE
T ss_pred CCCcEEEecccccCCCCEEEeC
Confidence 5777665532 22334566665
No 250
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=98.89 E-value=1.5e-09 Score=109.90 Aligned_cols=114 Identities=16% Similarity=0.255 Sum_probs=99.4
Q ss_pred eeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEee
Q 037288 293 CRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTF 372 (513)
Q Consensus 293 ~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~ 372 (513)
+.|.++|.|+.|...|.+|++|+.|..++||...+... +..+.||.+.|+.++.
T Consensus 187 lgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~---lAs~rGhs~ditdlav----------------------- 240 (1113)
T KOG0644|consen 187 LGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARC---LASCRGHSGDITDLAV----------------------- 240 (1113)
T ss_pred HhhhhheeeeeeccccceEeecCccceeeeeeccchhh---hccCCCCccccchhcc-----------------------
Confidence 45888999999999999999999999999999888776 4589999999988543
Q ss_pred cCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 037288 373 MPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIR 451 (513)
Q Consensus 373 ~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~ 451 (513)
+.+.-++++++.|..|++|.++ ...++..+.||++.|+. ++|+|-. +.+.||++++||.+
T Consensus 241 -----------s~~n~~iaaaS~D~vIrvWrl~--~~~pvsvLrghtgavta--iafsP~~----sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 241 -----------SSNNTMIAAASNDKVIRVWRLP--DGAPVSVLRGHTGAVTA--IAFSPRA----SSSDDGTCRIWDAR 300 (1113)
T ss_pred -----------chhhhhhhhcccCceEEEEecC--CCchHHHHhccccceee--eccCccc----cCCCCCceEecccc
Confidence 4466778899999999999997 56699999999999988 8888865 77889999999987
No 251
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.85 E-value=5.3e-08 Score=93.39 Aligned_cols=204 Identities=13% Similarity=0.116 Sum_probs=136.7
Q ss_pred eEEeccccCcEEEEEEcCCCC-EEEEEe-CCeEEEEECCCCcEEEEe---e-eCC---CeEEEEEecCC-cEEEEEeCCC
Q 037288 249 MHLVASFKCTVWTADFCTNPS-QAVIGT-NLGAAMVDMETGMASWVC---R-SKS---DILAQQVIHSG-NVVLCGFRNG 318 (513)
Q Consensus 249 ~~~~~~h~~~V~~~~~s~~g~-~l~s~s-~~~i~vwd~~~~~~~~~~---~-~~~---~V~~l~~~~~~-~~l~sg~~dg 318 (513)
...+..|.++|..++.-|+.. -|.+++ |+.+.-+|+.++.....+ . +.. ...+++.+|.. +.+++|+.|.
T Consensus 225 t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dq 304 (559)
T KOG1334|consen 225 TKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQ 304 (559)
T ss_pred ceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhh
Confidence 345778999999999999655 344554 555788899887643322 1 223 35888888866 6999999999
Q ss_pred eEEEEECCCCcccc---cccccccc------CcCeEEEeeCC---eEEEeE-----eecccC--cc---cce-------e
Q 037288 319 AIVTVDVRKRQRGC---SSRAGRRH------RIPYSRLQRND---RVTNEQ-----WFELKA--NI---WPS-------H 369 (513)
Q Consensus 319 ~i~iwd~~~~~~~~---~~~~~~~h------~~~v~~v~~~~---~~~s~~-----w~~~~~--~~---~~~-------~ 369 (513)
.+++||.+.-.... .+..+..| .-.|+++.|+. .+++.- |..... .. .+. +
T Consensus 305 f~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k 384 (559)
T KOG1334|consen 305 FARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVK 384 (559)
T ss_pred hhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccc
Confidence 99999988654321 02222222 34578888884 333322 222111 11 010 1
Q ss_pred E-ee---cCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcE
Q 037288 370 T-TF---MPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKL 445 (513)
Q Consensus 370 ~-~~---~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v 445 (513)
. .+ ....|..+-+|-|...|+++|+.=|.|.||+-. ....++-+++...-|.| +--+|--..||++|.|..|
T Consensus 385 ~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~--t~eii~~MegDr~VVNC--LEpHP~~PvLAsSGid~DV 460 (559)
T KOG1334|consen 385 RVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKK--TGEIIRFMEGDRHVVNC--LEPHPHLPVLASSGIDHDV 460 (559)
T ss_pred hhhcccccccccceeeeccCccceEEecCccceEEEEecc--hhHHHHHhhcccceEec--cCCCCCCchhhccCCccce
Confidence 1 11 123577777899999999999999999999964 33367777776666666 7778888899999999999
Q ss_pred EEEeCCCCeEE
Q 037288 446 RIWSIRSGELV 456 (513)
Q Consensus 446 ~vwd~~~~~~~ 456 (513)
+||-..+.+..
T Consensus 461 KIWTP~~~er~ 471 (559)
T KOG1334|consen 461 KIWTPLTAERA 471 (559)
T ss_pred eeecCCccccc
Confidence 99987555433
No 252
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.83 E-value=1.1e-06 Score=89.50 Aligned_cols=208 Identities=13% Similarity=0.075 Sum_probs=121.5
Q ss_pred cCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEE-e-CC--eE
Q 037288 204 TDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIG-T-NL--GA 279 (513)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~-s-~~--~i 279 (513)
.+.|..+.++.+.... ....+.++++.+.. ...+..+...+.+++|+|||+.|+.. + ++ .|
T Consensus 196 ~~Spdg~~la~~~~~~--~~~~i~v~d~~~g~-------------~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i 260 (417)
T TIGR02800 196 AWSPDGQKLAYVSFES--GKPEIYVQDLATGQ-------------REKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDI 260 (417)
T ss_pred cCCCCCCEEEEEEcCC--CCcEEEEEECCCCC-------------EEEeecCCCCccceEECCCCCEEEEEECCCCCccE
Confidence 3455555554443322 22456666655321 11233455667789999999977644 2 22 38
Q ss_pred EEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeC-CC--eEEEEECCCCccccccccccccCcCeEEEeeCCeEEEe
Q 037288 280 AMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFR-NG--AIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNE 356 (513)
Q Consensus 280 ~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~-dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~ 356 (513)
.+||+.++....+..+........|+|||+.|+..+. ++ .|+++|+.+++.. .+..+...+
T Consensus 261 ~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~----~l~~~~~~~------------ 324 (417)
T TIGR02800 261 YVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR----RLTFRGGYN------------ 324 (417)
T ss_pred EEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE----EeecCCCCc------------
Confidence 8999998876665555555667899999987765543 33 5777787655421 111111111
Q ss_pred EeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCC---eEEEEecCCCCccceEEecCCCCceeEEEEEEcCCC
Q 037288 357 QWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDG---TVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSE 433 (513)
Q Consensus 357 ~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg---~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g 433 (513)
.. ..++|++++++.++.++ .|.+||+. . +....+..... .. ...|+|+|
T Consensus 325 ---------------------~~-~~~spdg~~i~~~~~~~~~~~i~~~d~~--~-~~~~~l~~~~~-~~--~p~~spdg 376 (417)
T TIGR02800 325 ---------------------AS-PSWSPDGDLIAFVHREGGGFNIAVMDLD--G-GGERVLTDTGL-DE--SPSFAPNG 376 (417)
T ss_pred ---------------------cC-eEECCCCCEEEEEEccCCceEEEEEeCC--C-CCeEEccCCCC-CC--CceECCCC
Confidence 11 36788999999888776 78889985 2 33333332221 12 25789999
Q ss_pred CEEEEEeCCC---cEEEEeCCCCeEEEEecCCCCCeEEEEE
Q 037288 434 RFVMSGGEDC---KLRIWSIRSGELVFEDKFSNSVPSAVCW 471 (513)
Q Consensus 434 ~~l~sg~~Dg---~v~vwd~~~~~~~~~~~~~~~~v~~v~~ 471 (513)
++|+..+.++ .+++.+. +++....+....+.+..++|
T Consensus 377 ~~l~~~~~~~~~~~l~~~~~-~g~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 377 RMILYATTRGGRGVLGLVST-DGRFRARLPLGNGDVREPAW 416 (417)
T ss_pred CEEEEEEeCCCcEEEEEEEC-CCceeeECCCCCCCcCCCCC
Confidence 9988877754 3555554 34444555443334444444
No 253
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.82 E-value=1.4e-05 Score=74.78 Aligned_cols=233 Identities=12% Similarity=0.171 Sum_probs=135.6
Q ss_pred CCCCccccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCc----------EEEEEEcC
Q 037288 197 GKHPSCATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCT----------VWTADFCT 266 (513)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~----------V~~~~~s~ 266 (513)
|+.+.-.+.++..+.++...++ .|.+.++-+...-..... .....|.+. +....+.|
T Consensus 88 g~~p~yvsvd~~g~~vf~AnY~----~g~v~v~p~~~dG~l~~~---------v~~~~h~g~~p~~rQ~~~h~H~a~~tP 154 (346)
T COG2706 88 GSPPCYVSVDEDGRFVFVANYH----SGSVSVYPLQADGSLQPV---------VQVVKHTGSGPHERQESPHVHSANFTP 154 (346)
T ss_pred CCCCeEEEECCCCCEEEEEEcc----CceEEEEEcccCCccccc---------eeeeecCCCCCCccccCCccceeeeCC
Confidence 3333444455555566555553 366777666543222111 112223333 88899999
Q ss_pred CCCEEEEE--eCCeEEEEECCCCcEEEE----eeeCCCeEEEEEecCCcEEEEEeC-CCeEEEEECCCCccccccccccc
Q 037288 267 NPSQAVIG--TNLGAAMVDMETGMASWV----CRSKSDILAQQVIHSGNVVLCGFR-NGAIVTVDVRKRQRGCSSRAGRR 339 (513)
Q Consensus 267 ~g~~l~s~--s~~~i~vwd~~~~~~~~~----~~~~~~V~~l~~~~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~ 339 (513)
++++|++. +.+.|.+|++..|..... +.....-.-|.|+|++++.+.-++ +++|.+|....... . +..++.
T Consensus 155 ~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g-~-~~~lQ~ 232 (346)
T COG2706 155 DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVG-K-FEELQT 232 (346)
T ss_pred CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCc-e-EEEeee
Confidence 99999887 456799999998864332 233445789999999998776655 99999999887411 0 222221
Q ss_pred cCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEec-CCeEEEEecCCCCccceEEe---
Q 037288 340 HRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSM-DGTVKLYDHRLTTRGAVQSY--- 415 (513)
Q Consensus 340 h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~-dg~i~lwd~~~~~~~~~~~~--- 415 (513)
+..- | .-.......+-+.++++|++|.++.. ...|-+|.+.... +.+...
T Consensus 233 i~tl-----------------------P--~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~-g~L~~~~~~ 286 (346)
T COG2706 233 IDTL-----------------------P--EDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDG-GKLELVGIT 286 (346)
T ss_pred eccC-----------------------c--cccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCC-CEEEEEEEe
Confidence 1000 0 00111122223467899999988765 3478888876222 222211
Q ss_pred cCCCCceeEEEEEEcCCCCEEEEEeCCC-cEEEEeC--CCCeEEEEec-CCCCCeEEEEEc
Q 037288 416 EGHVNSHTRIQLGVDQSERFVMSGGEDC-KLRIWSI--RSGELVFEDK-FSNSVPSAVCWR 472 (513)
Q Consensus 416 ~~h~~~v~~~~~~~s~~g~~l~sg~~Dg-~v~vwd~--~~~~~~~~~~-~~~~~v~~v~~~ 472 (513)
..+.. .-..+.|+++|++|+++.+|+ .|.+|.. .+|++-.... .......+|.|.
T Consensus 287 ~teg~--~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 287 PTEGQ--FPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred ccCCc--CCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 22222 124488999999999998864 5788865 4566544433 222334556553
No 254
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.81 E-value=7.8e-07 Score=87.20 Aligned_cols=222 Identities=8% Similarity=0.039 Sum_probs=130.4
Q ss_pred ccccCcEEEEEEcCCCCEEEEEeC--CeEEEEECCCCcEEEEeeeCCCeEEEE-EecCCcEEEEEeCCCeEEEEECCCCc
Q 037288 253 ASFKCTVWTADFCTNPSQAVIGTN--LGAAMVDMETGMASWVCRSKSDILAQQ-VIHSGNVVLCGFRNGAIVTVDVRKRQ 329 (513)
Q Consensus 253 ~~h~~~V~~~~~s~~g~~l~s~s~--~~i~vwd~~~~~~~~~~~~~~~V~~l~-~~~~~~~l~sg~~dg~i~iwd~~~~~ 329 (513)
..|...-+.+..+|||+|+.+.+. -.|++||+..-.........+.|..+. .+-|-..++--..|.+|-+..--...
T Consensus 48 fe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~h 127 (703)
T KOG2321|consen 48 FEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRH 127 (703)
T ss_pred cCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCee
Confidence 356678889999999998765443 349999998654332222333343333 33333334444456666554322111
Q ss_pred cccccccccccCcCeEEEeeCC----eEEEeE------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeE
Q 037288 330 RGCSSRAGRRHRIPYSRLQRND----RVTNEQ------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTV 399 (513)
Q Consensus 330 ~~~~~~~~~~h~~~v~~v~~~~----~~~s~~------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i 399 (513)
... .+ ...-..+.++. .++.|+ ..+..|.. ...+....+...++..++...+|++|+.+|.|
T Consensus 128 y~~---RI---P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrf--L~P~~~~~~~lN~v~in~~hgLla~Gt~~g~V 199 (703)
T KOG2321|consen 128 YRT---RI---PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRF--LNPFETDSGELNVVSINEEHGLLACGTEDGVV 199 (703)
T ss_pred eee---ec---CcCCccccccCCCccEEEeecCcceEEEEcccccc--ccccccccccceeeeecCccceEEecccCceE
Confidence 000 00 00112233332 222222 33333332 23444443444445677788899999999999
Q ss_pred EEEecCCCCccceEEec------CCCCc---eeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCC-CCCeEEE
Q 037288 400 KLYDHRLTTRGAVQSYE------GHVNS---HTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFS-NSVPSAV 469 (513)
Q Consensus 400 ~lwd~~~~~~~~~~~~~------~h~~~---v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~-~~~v~~v 469 (513)
..||.| ....+.++. .|.+. ....++.|+-+|-.+++|..+|.|.|||+++.+++..-.+. .-+|..+
T Consensus 200 EfwDpR--~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l 277 (703)
T KOG2321|consen 200 EFWDPR--DKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKL 277 (703)
T ss_pred EEecch--hhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeee
Confidence 999998 444343332 22222 22234889888999999999999999999999998875432 4578899
Q ss_pred EEcCC--CceEEeeCCC
Q 037288 470 CWRTQ--RSMGPQIEGK 484 (513)
Q Consensus 470 ~~~p~--~~~~~t~~~~ 484 (513)
.|.+. ...++|.+..
T Consensus 278 ~~~~~~~q~~v~S~Dk~ 294 (703)
T KOG2321|consen 278 DWQDTDQQNKVVSMDKR 294 (703)
T ss_pred cccccCCCceEEecchH
Confidence 99776 4455555433
No 255
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.79 E-value=7.3e-08 Score=87.39 Aligned_cols=175 Identities=14% Similarity=0.149 Sum_probs=115.5
Q ss_pred eccccCcEEEEEEcCCCCEEEEEeCCeEEEEECCCCc----EEEEeeeC-----CCeEEEEEecCC-cEEEEEeCCCeEE
Q 037288 252 VASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMETGM----ASWVCRSK-----SDILAQQVIHSG-NVVLCGFRNGAIV 321 (513)
Q Consensus 252 ~~~h~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~----~~~~~~~~-----~~V~~l~~~~~~-~~l~sg~~dg~i~ 321 (513)
-..|...|+++.|+.|...+.++.+-.|.+|+++-.. .+.+..|. .-|++..|+|.. +++.-.+..|.|+
T Consensus 168 aNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ik 247 (460)
T COG5170 168 ANAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIK 247 (460)
T ss_pred cccceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEE
Confidence 3678899999999999999999988889999987432 22222222 247899999976 6778888899999
Q ss_pred EEECCCCccccc-cccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEE
Q 037288 322 TVDVRKRQRGCS-SRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVK 400 (513)
Q Consensus 322 iwd~~~~~~~~~-~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~ 400 (513)
+-|+|.....-. .+.+....+++.. +| .-..-++|.. ..|+++|+++++-+.- +|+
T Consensus 248 l~DlRq~alcdn~~klfe~~~D~v~~-~f--------------------f~eivsSISD-~kFs~ngryIlsRdyl-tvk 304 (460)
T COG5170 248 LNDLRQSALCDNSKKLFELTIDGVDV-DF--------------------FEEIVSSISD-FKFSDNGRYILSRDYL-TVK 304 (460)
T ss_pred ehhhhhhhhccCchhhhhhccCcccc-hh--------------------HHHHhhhhcc-eEEcCCCcEEEEeccc-eEE
Confidence 999995432110 0011111111110 00 0001122333 4688899999987765 899
Q ss_pred EEecCCCCccceEEecCCCC------------cee-EEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 037288 401 LYDHRLTTRGAVQSYEGHVN------------SHT-RIQLGVDQSERFVMSGGEDCKLRIWSI 450 (513)
Q Consensus 401 lwd~~~~~~~~~~~~~~h~~------------~v~-~~~~~~s~~g~~l~sg~~Dg~v~vwd~ 450 (513)
+||.++ ...+++++..|.. .+. ...+.|+.|.+.+++|+..+..-++-+
T Consensus 305 iwDvnm-~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 305 IWDVNM-AKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred EEeccc-ccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeecc
Confidence 999984 3448888765532 221 245788999999999999888877764
No 256
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.79 E-value=4.8e-07 Score=83.37 Aligned_cols=229 Identities=13% Similarity=0.125 Sum_probs=158.9
Q ss_pred EEeccccCcEEEEEEcCCCCEEEEEeC-CeEEEE-ECCCCcEEEEee--eCCCeEEEEEecCCcEEEEEeCCCeEEEEEC
Q 037288 250 HLVASFKCTVWTADFCTNPSQAVIGTN-LGAAMV-DMETGMASWVCR--SKSDILAQQVIHSGNVVLCGFRNGAIVTVDV 325 (513)
Q Consensus 250 ~~~~~h~~~V~~~~~s~~g~~l~s~s~-~~i~vw-d~~~~~~~~~~~--~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~ 325 (513)
..+.||.+.|++...-|-..-+.+.++ .+++|| ..+.++.-..+. .+++++++.+.++...|++|-.+|++.-+.+
T Consensus 18 ~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~ 97 (404)
T KOG1409|consen 18 SKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFAL 97 (404)
T ss_pred hhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEh
Confidence 447899999999988886666666655 459999 455555433333 4667999999999999999999999999977
Q ss_pred CCCcccc-ccccccccCcCeEEEeeCC---eEEEeE------eeccc-CcccceeEeecCC-CceEEEEEcCCCCEEEEE
Q 037288 326 RKRQRGC-SSRAGRRHRIPYSRLQRND---RVTNEQ------WFELK-ANIWPSHTTFMPS-SISCLQSLQLYDQYFLAS 393 (513)
Q Consensus 326 ~~~~~~~-~~~~~~~h~~~v~~v~~~~---~~~s~~------w~~~~-~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~s~ 393 (513)
...-... ..+....|...+..+-|+. .+++.+ |.-.+ +.......+.... ...+ +-.+...|
T Consensus 98 sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~------d~~~~fvG 171 (404)
T KOG1409|consen 98 SEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQF------DALYAFVG 171 (404)
T ss_pred hhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCce------eeEEEEec
Confidence 5432211 1557789999999999876 555554 33221 2211112221111 1111 11145566
Q ss_pred ecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-EEEEecCCCCCeEEEEEc
Q 037288 394 SMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGE-LVFEDKFSNSVPSAVCWR 472 (513)
Q Consensus 394 s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~-~~~~~~~~~~~v~~v~~~ 472 (513)
...|.|.+-.+.....+++.++.+|.+.+++ +.|++..+.|++|..|..+.+||+...+ ...++.+|...|..+++.
T Consensus 172 d~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~--l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~ 249 (404)
T KOG1409|consen 172 DHSGQITMLKLEQNGCQLITTFNGHTGEVTC--LKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYA 249 (404)
T ss_pred ccccceEEEEEeecCCceEEEEcCcccceEE--EEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhh
Confidence 6777777776653334488899999999988 8999999999999999999999997655 344567788889888888
Q ss_pred CCCceEEeeCCCee
Q 037288 473 TQRSMGPQIEGKIH 486 (513)
Q Consensus 473 p~~~~~~t~~~~~~ 486 (513)
+--..+.+.+.|..
T Consensus 250 ~~t~~l~S~~edg~ 263 (404)
T KOG1409|consen 250 QHTRQLISCGEDGG 263 (404)
T ss_pred hhheeeeeccCCCe
Confidence 87666666655544
No 257
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.76 E-value=5e-08 Score=106.58 Aligned_cols=132 Identities=14% Similarity=0.186 Sum_probs=94.6
Q ss_pred cCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEe---CC-eEEEEECCCCc---EEEE
Q 037288 220 ETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGT---NL-GAAMVDMETGM---ASWV 292 (513)
Q Consensus 220 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s---~~-~i~vwd~~~~~---~~~~ 292 (513)
.+.+|.+.+|+.. +. .....+.|.....++.|-. ..+++++ |+ .+.+||..-.. ++.
T Consensus 2269 ~d~dg~l~l~q~~------------pk-~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~- 2332 (2439)
T KOG1064|consen 2269 VDGDGDLSLWQAS------------PK-PYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH- 2332 (2439)
T ss_pred eccCCceeecccC------------Cc-ceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee-
Confidence 3456666666554 11 2445678888999988865 5555442 33 39999965433 233
Q ss_pred eeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEee
Q 037288 293 CRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTF 372 (513)
Q Consensus 293 ~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~ 372 (513)
..|.+.++++++.|..++|++|+++|.|++||++..+... .++
T Consensus 2333 ~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h---~~~---------------------------------- 2375 (2439)
T KOG1064|consen 2333 TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRH---TFQ---------------------------------- 2375 (2439)
T ss_pred eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHH---Hhh----------------------------------
Confidence 4588899999999999999999999999999999876533 111
Q ss_pred cCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEec
Q 037288 373 MPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYE 416 (513)
Q Consensus 373 ~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~ 416 (513)
++. ...+|++|+..|.|+||++. ..+.++++.
T Consensus 2376 ---------~~~-~~~~f~~~ss~g~ikIw~~s--~~~ll~~~p 2407 (2439)
T KOG1064|consen 2376 ---------ALD-TREYFVTGSSEGNIKIWRLS--EFGLLHTFP 2407 (2439)
T ss_pred ---------hhh-hhheeeccCcccceEEEEcc--ccchhhcCc
Confidence 123 46789999999999999997 445555553
No 258
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.75 E-value=8.2e-07 Score=81.89 Aligned_cols=152 Identities=11% Similarity=0.004 Sum_probs=103.7
Q ss_pred EeccccCcEEEEEEcCCCCEEEEEeCCeEEEEEC-CCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCc
Q 037288 251 LVASFKCTVWTADFCTNPSQAVIGTNLGAAMVDM-ETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQ 329 (513)
Q Consensus 251 ~~~~h~~~V~~~~~s~~g~~l~s~s~~~i~vwd~-~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~ 329 (513)
....|...|..+-|+-...++++.+.++-..|-. +.+..+.-+.....-+++.|.-. +.+.|...|.|.+-.+....
T Consensus 109 ~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~ 186 (404)
T KOG1409|consen 109 DYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YAFVGDHSGQITMLKLEQNG 186 (404)
T ss_pred hhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EEEecccccceEEEEEeecC
Confidence 3668999999999998888888877666545643 33333222222222233333322 67778788888887776665
Q ss_pred cccccccccccCcCeEEEeeCC---eEEEeE-------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeE
Q 037288 330 RGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTV 399 (513)
Q Consensus 330 ~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i 399 (513)
... +.++.+|.+++.++.|.+ .+++|. |++............+...+..+ +.-+--+.+.+++.||.|
T Consensus 187 ~~~-i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l-~~~~~t~~l~S~~edg~i 264 (404)
T KOG1409|consen 187 CQL-ITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQAL-SYAQHTRQLISCGEDGGI 264 (404)
T ss_pred Cce-EEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhh-hhhhhheeeeeccCCCeE
Confidence 554 778999999999999999 566665 88876665544444555555554 333456788999999999
Q ss_pred EEEecCC
Q 037288 400 KLYDHRL 406 (513)
Q Consensus 400 ~lwd~~~ 406 (513)
.+||+..
T Consensus 265 ~~w~mn~ 271 (404)
T KOG1409|consen 265 VVWNMNV 271 (404)
T ss_pred EEEeccc
Confidence 9999864
No 259
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.73 E-value=6.7e-07 Score=88.11 Aligned_cols=161 Identities=12% Similarity=0.141 Sum_probs=113.6
Q ss_pred CCCEEEEEeC-CeEEEEECCCCcEEEEee---eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCc
Q 037288 267 NPSQAVIGTN-LGAAMVDMETGMASWVCR---SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRI 342 (513)
Q Consensus 267 ~g~~l~s~s~-~~i~vwd~~~~~~~~~~~---~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~ 342 (513)
+...++-|.. +.|.++++..|+..+.+. |.+.|.++.++.+-..|.+++.|+.+..|+.......+ ...+...
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~---~~~~~~~ 145 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIR---IWKEQKP 145 (541)
T ss_pred CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeee---eeccCCC
Confidence 4456677754 449999999999877775 77889999999888999999999999999998776433 2222222
Q ss_pred CeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCce
Q 037288 343 PYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSH 422 (513)
Q Consensus 343 ~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v 422 (513)
- +.+ .+++||+..+++|+ +.|++||+. +.+.+.+|.||.++|
T Consensus 146 ~---------------------------------~~s-l~is~D~~~l~~as--~~ik~~~~~--~kevv~~ftgh~s~v 187 (541)
T KOG4547|consen 146 L---------------------------------VSS-LCISPDGKILLTAS--RQIKVLDIE--TKEVVITFTGHGSPV 187 (541)
T ss_pred c---------------------------------cce-EEEcCCCCEEEecc--ceEEEEEcc--CceEEEEecCCCcce
Confidence 2 222 46788999999988 789999997 666999999999999
Q ss_pred eEEEEEEcCC---CCEEEE-EeCCCcEEEEeCCC----CeEEEEecCCCCCeEE
Q 037288 423 TRIQLGVDQS---ERFVMS-GGEDCKLRIWSIRS----GELVFEDKFSNSVPSA 468 (513)
Q Consensus 423 ~~~~~~~s~~---g~~l~s-g~~Dg~v~vwd~~~----~~~~~~~~~~~~~v~~ 468 (513)
..+.+.-+-+ |.++++ ...+..+.+|-+.. +...+.+...+.+++.
T Consensus 188 ~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~kkks~~~sl~~~dipv~~ 241 (541)
T KOG4547|consen 188 RTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKEDKKKSLSCSLTVPDIPVTS 241 (541)
T ss_pred EEEEEEEeccccccceeeeccccccceeEEEEEcccccchhheeeccCCCCeEe
Confidence 8854433322 566654 34456677886544 2333444444444433
No 260
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.67 E-value=9e-05 Score=69.47 Aligned_cols=253 Identities=11% Similarity=0.106 Sum_probs=160.2
Q ss_pred CccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEe----CCeEEEEECC--CCcEEEEee--
Q 037288 223 GGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGT----NLGAAMVDME--TGMASWVCR-- 294 (513)
Q Consensus 223 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s----~~~i~vwd~~--~~~~~~~~~-- 294 (513)
...+.+|++++...... ...+-.+.....=++|+|+++.|.++. +++|..|.++ +|+...+-.
T Consensus 15 s~gI~v~~ld~~~g~l~---------~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~ 85 (346)
T COG2706 15 SQGIYVFNLDTKTGELS---------LLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQT 85 (346)
T ss_pred CCceEEEEEeCcccccc---------hhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccc
Confidence 55677777774433322 122445557788899999998877663 3447666555 466443322
Q ss_pred -eCCCeEEEEEecCCcEEEEEeC-CCeEEEEECCCCccccccccccccCcC----------eEEEeeCC--eEE-EeE--
Q 037288 295 -SKSDILAQQVIHSGNVVLCGFR-NGAIVTVDVRKRQRGCSSRAGRRHRIP----------YSRLQRND--RVT-NEQ-- 357 (513)
Q Consensus 295 -~~~~V~~l~~~~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~h~~~----------v~~v~~~~--~~~-s~~-- 357 (513)
...+-..++++++|++|+++.. .|.|.++-++.............|.+. +....+.| +++ +..
T Consensus 86 ~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG 165 (346)
T COG2706 86 LPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG 165 (346)
T ss_pred cCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecC
Confidence 2233488999999999998876 589999999764322213334445554 67777888 333 332
Q ss_pred ------eecccCcccceeEeec--CCCceEEEEEcCCCCEEEEEec-CCeEEEEecCCCCcc---ceEEec----CCCCc
Q 037288 358 ------WFELKANIWPSHTTFM--PSSISCLQSLQLYDQYFLASSM-DGTVKLYDHRLTTRG---AVQSYE----GHVNS 421 (513)
Q Consensus 358 ------w~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~s~s~-dg~i~lwd~~~~~~~---~~~~~~----~h~~~ 421 (513)
|++..+.+.+...... ...... +.|+|++++..+.+. +++|-+|..... .+ .++++. ...+.
T Consensus 166 ~Dri~~y~~~dg~L~~~~~~~v~~G~GPRH-i~FHpn~k~aY~v~EL~stV~v~~y~~~-~g~~~~lQ~i~tlP~dF~g~ 243 (346)
T COG2706 166 TDRIFLYDLDDGKLTPADPAEVKPGAGPRH-IVFHPNGKYAYLVNELNSTVDVLEYNPA-VGKFEELQTIDTLPEDFTGT 243 (346)
T ss_pred CceEEEEEcccCccccccccccCCCCCcce-EEEcCCCcEEEEEeccCCEEEEEEEcCC-CceEEEeeeeccCccccCCC
Confidence 7777777665544333 334445 488999998876654 999999998632 12 333321 22334
Q ss_pred eeEEEEEEcCCCCEEEEEeC-CCcEEEEeCCC--CeEEEE--ecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288 422 HTRIQLGVDQSERFVMSGGE-DCKLRIWSIRS--GELVFE--DKFSNSVPSAVCWRTQRSMGPQIEGKIH 486 (513)
Q Consensus 422 v~~~~~~~s~~g~~l~sg~~-Dg~v~vwd~~~--~~~~~~--~~~~~~~v~~v~~~p~~~~~~t~~~~~~ 486 (513)
...-++.+++||++|.++.. ...|-+|.+.. +++... ...+....+...+++.+.+|+..+.+-.
T Consensus 244 ~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd 313 (346)
T COG2706 244 NWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSD 313 (346)
T ss_pred CceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCC
Confidence 44556889999999988754 34788887754 443322 3344555889999999877777666655
No 261
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.67 E-value=7.2e-08 Score=93.66 Aligned_cols=171 Identities=12% Similarity=0.098 Sum_probs=115.2
Q ss_pred eEEeccccCcEEEEEEcCCCCEEEEE-eCCeEEEEECCCC-------cEEEEee-eCCCeEEEEEecCCcEEEEEeCCCe
Q 037288 249 MHLVASFKCTVWTADFCTNPSQAVIG-TNLGAAMVDMETG-------MASWVCR-SKSDILAQQVIHSGNVVLCGFRNGA 319 (513)
Q Consensus 249 ~~~~~~h~~~V~~~~~s~~g~~l~s~-s~~~i~vwd~~~~-------~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~ 319 (513)
+..+.||+..|..++--.+.+-++++ .|++|++|.+... .+..++. |+.+|.++.|-.+-+.++++ ||-
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence 45688999999988766655555554 6778999987632 3566665 88899999999888877765 899
Q ss_pred EEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcC-CCCEEEEE-ecCC
Q 037288 320 IVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQL-YDQYFLAS-SMDG 397 (513)
Q Consensus 320 i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~-s~dg 397 (513)
|.+||.--++... +..... ..+.+..+.++.. +...++.| +...
T Consensus 806 iHlWDPFigr~La--q~~dap--------------------------------k~~a~~~ikcl~nv~~~iliAgcsaeS 851 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLA--QMEDAP--------------------------------KEGAGGNIKCLENVDRHILIAGCSAES 851 (1034)
T ss_pred ceeecccccchhH--hhhcCc--------------------------------ccCCCceeEecccCcchheeeeccchh
Confidence 9999987665422 000000 0111222223332 34444444 7789
Q ss_pred eEEEEecCCCCccceEEec-----CCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEe
Q 037288 398 TVKLYDHRLTTRGAVQSYE-----GHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFED 459 (513)
Q Consensus 398 ~i~lwd~~~~~~~~~~~~~-----~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~ 459 (513)
+|+++|.| ..+....++ +....+. ++++.+.|+++++|-.+|+|.+.|.++|+.+..+
T Consensus 852 TVKl~DaR--sce~~~E~kVcna~~Pna~~R--~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINsw 914 (1034)
T KOG4190|consen 852 TVKLFDAR--SCEWTCELKVCNAPGPNALTR--AIAVADKGNKLAAALSNGCIAILDARNGKVINSW 914 (1034)
T ss_pred hheeeecc--cccceeeEEeccCCCCchhee--EEEeccCcchhhHHhcCCcEEEEecCCCceeccC
Confidence 99999998 443333332 2223333 4778899999999999999999999999977743
No 262
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.66 E-value=4.9e-05 Score=74.84 Aligned_cols=215 Identities=11% Similarity=0.101 Sum_probs=136.3
Q ss_pred EEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEeeeCCCeEEEEEecCC--cEEEE-----EeCCCeEEEEECCCCcccc
Q 037288 260 WTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCRSKSDILAQQVIHSG--NVVLC-----GFRNGAIVTVDVRKRQRGC 332 (513)
Q Consensus 260 ~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~--~~l~s-----g~~dg~i~iwd~~~~~~~~ 332 (513)
|+..|+.|..+.|--..+.+.+|++...+.....-|...|..+.++|.+ ..||+ ++.-+.|+||.........
T Consensus 129 W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~ 208 (566)
T KOG2315|consen 129 WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQ 208 (566)
T ss_pred cccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccc
Confidence 8999999988877666677999998875543333367779999999874 34433 3556789999876332211
Q ss_pred ccccccccCcCeEEEeeCC-----eEEEeE-eecccCccc------------ceeEe--ecCCCceEEEEEcCCCCEEEE
Q 037288 333 SSRAGRRHRIPYSRLQRND-----RVTNEQ-WFELKANIW------------PSHTT--FMPSSISCLQSLQLYDQYFLA 392 (513)
Q Consensus 333 ~~~~~~~h~~~v~~v~~~~-----~~~s~~-w~~~~~~~~------------~~~~~--~~~~~v~~~~~~~~~~~~l~s 392 (513)
.+..-.=....-..+.|++ .+++.+ .|....... ....+ .-.++|.++ .|++++..|++
T Consensus 209 ~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv-~W~~s~~EF~V 287 (566)
T KOG2315|consen 209 PVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDV-TWSPSGREFAV 287 (566)
T ss_pred hhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEE-EECCCCCEEEE
Confidence 0101000122233455665 222222 111110000 01122 224566665 67788876654
Q ss_pred --EecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeC---CCcEEEEeCCCCeEEEEecCCCCCeE
Q 037288 393 --SSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGE---DCKLRIWSIRSGELVFEDKFSNSVPS 467 (513)
Q Consensus 393 --~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~---Dg~v~vwd~~~~~~~~~~~~~~~~v~ 467 (513)
|-+=-++.|||++ ..++..+- .++-.. +-|+|.|++|+.+|. -|.+-|||+.+.+++..+...+ -+
T Consensus 288 vyGfMPAkvtifnlr---~~~v~df~--egpRN~--~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt 358 (566)
T KOG2315|consen 288 VYGFMPAKVTIFNLR---GKPVFDFP--EGPRNT--AFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TT 358 (566)
T ss_pred EEecccceEEEEcCC---CCEeEeCC--CCCccc--eEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC--ce
Confidence 5677889999996 44665553 333333 789999999988776 4789999999999999887755 46
Q ss_pred EEEEcCCCceEEeeCCC
Q 037288 468 AVCWRTQRSMGPQIEGK 484 (513)
Q Consensus 468 ~v~~~p~~~~~~t~~~~ 484 (513)
-+.|+|++.+|.|+...
T Consensus 359 ~~eW~PdGe~flTATTa 375 (566)
T KOG2315|consen 359 VFEWSPDGEYFLTATTA 375 (566)
T ss_pred EEEEcCCCcEEEEEecc
Confidence 79999998877776655
No 263
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.65 E-value=6e-06 Score=81.58 Aligned_cols=162 Identities=11% Similarity=0.070 Sum_probs=103.5
Q ss_pred eCCeEEEEECCCCcEEEEeeeCCCe-EEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeE
Q 037288 275 TNLGAAMVDMETGMASWVCRSKSDI-LAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRV 353 (513)
Q Consensus 275 s~~~i~vwd~~~~~~~~~~~~~~~V-~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~ 353 (513)
.++.|.+.|..+.+.+..+.....+ ..+.|+|||+++++++.||.|.++|+.+.+...
T Consensus 14 ~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~--------------------- 72 (369)
T PF02239_consen 14 GSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVA--------------------- 72 (369)
T ss_dssp GGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEE---------------------
T ss_pred CCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEE---------------------
Confidence 4677999999999999988866665 457899999999999999999999999987533
Q ss_pred EEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEe-cCCeEEEEecCCCCccceEEecCC-------CCceeEE
Q 037288 354 TNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASS-MDGTVKLYDHRLTTRGAVQSYEGH-------VNSHTRI 425 (513)
Q Consensus 354 ~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s-~dg~i~lwd~~~~~~~~~~~~~~h-------~~~v~~~ 425 (513)
.+.......+ ..++++|++++++. .++.+.++|.. ..++++.+... ...+..
T Consensus 73 ----------------~i~~G~~~~~-i~~s~DG~~~~v~n~~~~~v~v~D~~--tle~v~~I~~~~~~~~~~~~Rv~a- 132 (369)
T PF02239_consen 73 ----------------TIKVGGNPRG-IAVSPDGKYVYVANYEPGTVSVIDAE--TLEPVKTIPTGGMPVDGPESRVAA- 132 (369)
T ss_dssp ----------------EEE-SSEEEE-EEE--TTTEEEEEEEETTEEEEEETT--T--EEEEEE--EE-TTTS---EEE-
T ss_pred ----------------EEecCCCcce-EEEcCCCCEEEEEecCCCceeEeccc--cccceeecccccccccccCCCcee-
Confidence 2222222222 47789999999776 58999999987 45566665432 122222
Q ss_pred EEEEcCCCC-EEEEEeCCCcEEEEeCCCCeEEEE-ecCCCCCeEEEEEcCCCceE
Q 037288 426 QLGVDQSER-FVMSGGEDCKLRIWSIRSGELVFE-DKFSNSVPSAVCWRTQRSMG 478 (513)
Q Consensus 426 ~~~~s~~g~-~l~sg~~Dg~v~vwd~~~~~~~~~-~~~~~~~v~~v~~~p~~~~~ 478 (513)
+..+|... ++++--.-+.|.+-|....+.+.. ............|.|++.+|
T Consensus 133 -Iv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~ 186 (369)
T PF02239_consen 133 -IVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYF 186 (369)
T ss_dssp -EEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEE
T ss_pred -EEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCccccee
Confidence 55567776 555555558888888877654432 22234567889999996543
No 264
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.64 E-value=3.7e-06 Score=85.80 Aligned_cols=157 Identities=12% Similarity=0.037 Sum_probs=98.5
Q ss_pred eEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeC-C--CeEEEEECCCCccccccccccccCcCeEEEeeCCeEE
Q 037288 278 GAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFR-N--GAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVT 354 (513)
Q Consensus 278 ~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~-d--g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~ 354 (513)
.+.++|........+......+.+..|+|||+.|+..+. + ..|++||+.+++... +..+.++.
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~------------- 264 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGIN------------- 264 (448)
T ss_pred EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCc-------------
Confidence 466778776655555667778999999999987776543 3 368888988765322 11111110
Q ss_pred EeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEE-EecCCe--EEEEecCCCCccceEEecCCCCceeEEEEEEcC
Q 037288 355 NEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLA-SSMDGT--VKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQ 431 (513)
Q Consensus 355 s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s-~s~dg~--i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~ 431 (513)
....|+|+|+.|+. .+.+|. |.++|+. .+.+..+..+...... .+|+|
T Consensus 265 ------------------------~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~---tg~~~~lt~~~~~~~~--p~wSp 315 (448)
T PRK04792 265 ------------------------GAPRFSPDGKKLALVLSKDGQPEIYVVDIA---TKALTRITRHRAIDTE--PSWHP 315 (448)
T ss_pred ------------------------CCeeECCCCCEEEEEEeCCCCeEEEEEECC---CCCeEECccCCCCccc--eEECC
Confidence 01367899998875 455665 6667774 3344555545433333 78999
Q ss_pred CCCEEEEEeC-CC--cEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceE
Q 037288 432 SERFVMSGGE-DC--KLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMG 478 (513)
Q Consensus 432 ~g~~l~sg~~-Dg--~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~ 478 (513)
||++|+..+. ++ .|+++|+.+++.... ..........+|+|++..+
T Consensus 316 DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-t~~g~~~~~~~~SpDG~~l 364 (448)
T PRK04792 316 DGKSLIFTSERGGKPQIYRVNLASGKVSRL-TFEGEQNLGGSITPDGRSM 364 (448)
T ss_pred CCCEEEEEECCCCCceEEEEECCCCCEEEE-ecCCCCCcCeeECCCCCEE
Confidence 9998876554 33 577778887775432 2222234457899996443
No 265
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.55 E-value=0.00016 Score=67.70 Aligned_cols=181 Identities=14% Similarity=0.134 Sum_probs=114.2
Q ss_pred EEEEEEc-CCCCEEEEEeCCeEEEEECCCCcEEEEeee------CCCeEEEEEecCCcEEEEEeCC--------CeEEEE
Q 037288 259 VWTADFC-TNPSQAVIGTNLGAAMVDMETGMASWVCRS------KSDILAQQVIHSGNVVLCGFRN--------GAIVTV 323 (513)
Q Consensus 259 V~~~~~s-~~g~~l~s~s~~~i~vwd~~~~~~~~~~~~------~~~V~~l~~~~~~~~l~sg~~d--------g~i~iw 323 (513)
...+++. +++.++++ ..+++.++|..+++...+... ......+++.++|++.++.... |.|..+
T Consensus 42 ~~G~~~~~~~g~l~v~-~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~ 120 (246)
T PF08450_consen 42 PNGMAFDRPDGRLYVA-DSGGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRI 120 (246)
T ss_dssp EEEEEEECTTSEEEEE-ETTCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEE
T ss_pred CceEEEEccCCEEEEE-EcCceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEE
Confidence 6677777 56555544 456666679999876555543 1237899999999977766543 456666
Q ss_pred ECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEE-EEecCCeEEEE
Q 037288 324 DVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFL-ASSMDGTVKLY 402 (513)
Q Consensus 324 d~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-s~s~dg~i~lw 402 (513)
+.. ++... +...- ....-++++++++.|+ +-+..+.|..+
T Consensus 121 ~~~-~~~~~----~~~~~----------------------------------~~pNGi~~s~dg~~lyv~ds~~~~i~~~ 161 (246)
T PF08450_consen 121 DPD-GKVTV----VADGL----------------------------------GFPNGIAFSPDGKTLYVADSFNGRIWRF 161 (246)
T ss_dssp ETT-SEEEE----EEEEE----------------------------------SSEEEEEEETTSSEEEEEETTTTEEEEE
T ss_pred CCC-CeEEE----EecCc----------------------------------ccccceEECCcchheeecccccceeEEE
Confidence 666 32211 00000 1112257888998765 55678889999
Q ss_pred ecCCCCcc--ceEEe---cCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEc-CC-C
Q 037288 403 DHRLTTRG--AVQSY---EGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWR-TQ-R 475 (513)
Q Consensus 403 d~~~~~~~--~~~~~---~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~-p~-~ 475 (513)
++...... ....+ ....+..-. ++++.+|++.++....+.|.++|.. |+++..+......+++++|. ++ .
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~g~pDG--~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~ 238 (246)
T PF08450_consen 162 DLDADGGELSNRRVFIDFPGGPGYPDG--LAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGK 238 (246)
T ss_dssp EEETTTCCEEEEEEEEE-SSSSCEEEE--EEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSS
T ss_pred eccccccceeeeeeEEEcCCCCcCCCc--ceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCC
Confidence 98522221 11222 222222333 8889999988888889999999977 99888877665689999994 55 7
Q ss_pred ceEEeeC
Q 037288 476 SMGPQIE 482 (513)
Q Consensus 476 ~~~~t~~ 482 (513)
.+++|+.
T Consensus 239 ~L~vTta 245 (246)
T PF08450_consen 239 TLYVTTA 245 (246)
T ss_dssp EEEEEEB
T ss_pred EEEEEeC
Confidence 7888765
No 266
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.55 E-value=0.00023 Score=70.23 Aligned_cols=225 Identities=9% Similarity=0.075 Sum_probs=132.0
Q ss_pred CcEEEEEEcCCCCEEEEEeC-----CeEEEEECCC--CcEEE--Eee-eCCCeEEEEEecCCcEEEEEeC-CCeEEEEEC
Q 037288 257 CTVWTADFCTNPSQAVIGTN-----LGAAMVDMET--GMASW--VCR-SKSDILAQQVIHSGNVVLCGFR-NGAIVTVDV 325 (513)
Q Consensus 257 ~~V~~~~~s~~g~~l~s~s~-----~~i~vwd~~~--~~~~~--~~~-~~~~V~~l~~~~~~~~l~sg~~-dg~i~iwd~ 325 (513)
....-++++|++++|.+... +.|..|++.. +.... ... .......++++|++++|+++.. +|.|.++++
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l 116 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL 116 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence 34566888999998887744 3587887765 44322 222 2334678999999999888875 899999999
Q ss_pred CCCcccccccccc-----------ccCcCeEEEeeCC---eEEEeE--------eecccC--cccceeEeec--CCCceE
Q 037288 326 RKRQRGCSSRAGR-----------RHRIPYSRLQRND---RVTNEQ--------WFELKA--NIWPSHTTFM--PSSISC 379 (513)
Q Consensus 326 ~~~~~~~~~~~~~-----------~h~~~v~~v~~~~---~~~s~~--------w~~~~~--~~~~~~~~~~--~~~v~~ 379 (513)
............. .......++.++| .++... |+.... .+.....+.. ......
T Consensus 117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh 196 (345)
T PF10282_consen 117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRH 196 (345)
T ss_dssp CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEE
T ss_pred cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcE
Confidence 8743221011111 1123456788888 344332 333332 2433333322 334445
Q ss_pred EEEEcCCCCEEEEEe-cCCeEEEEecCCCCcc--ceEEecC----CCCceeEEEEEEcCCCCEEEEEeC-CCcEEEEeCC
Q 037288 380 LQSLQLYDQYFLASS-MDGTVKLYDHRLTTRG--AVQSYEG----HVNSHTRIQLGVDQSERFVMSGGE-DCKLRIWSIR 451 (513)
Q Consensus 380 ~~~~~~~~~~l~s~s-~dg~i~lwd~~~~~~~--~~~~~~~----h~~~v~~~~~~~s~~g~~l~sg~~-Dg~v~vwd~~ 451 (513)
+.|+|+++++.+.. .++.|.++++...... .++.+.. .......-.+.++|||++|+++.. ++.|.+|++.
T Consensus 197 -~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d 275 (345)
T PF10282_consen 197 -LAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLD 275 (345)
T ss_dssp -EEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred -EEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence 47889998876554 5888999998621111 2333321 111113345889999999887664 6789999993
Q ss_pred --CCe--EEEEecCCCCCeEEEEEcCCCceEEeeC
Q 037288 452 --SGE--LVFEDKFSNSVPSAVCWRTQRSMGPQIE 482 (513)
Q Consensus 452 --~~~--~~~~~~~~~~~v~~v~~~p~~~~~~t~~ 482 (513)
+++ .+..+.......+.++++|++.+++.+.
T Consensus 276 ~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~ 310 (345)
T PF10282_consen 276 PATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVAN 310 (345)
T ss_dssp TTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEE
T ss_pred cCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEe
Confidence 344 3334444455689999999965544443
No 267
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.54 E-value=5.4e-05 Score=76.26 Aligned_cols=172 Identities=12% Similarity=0.050 Sum_probs=108.0
Q ss_pred cEEEEEEcCCCCE-EEEEe-C---CeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEE-EEeCC--CeEEEEECCCCc
Q 037288 258 TVWTADFCTNPSQ-AVIGT-N---LGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVL-CGFRN--GAIVTVDVRKRQ 329 (513)
Q Consensus 258 ~V~~~~~s~~g~~-l~s~s-~---~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~-sg~~d--g~i~iwd~~~~~ 329 (513)
.+....|+|||+. ++..+ + ..|.++|+.+++...+....+.+.+..|+|||+.|+ +.+.+ ..|.++|+..+.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~ 268 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT 268 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence 7788999999984 55432 2 238899999998777666666677889999996544 44434 567777887665
Q ss_pred cccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEec-CC--eEEEEecCC
Q 037288 330 RGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSM-DG--TVKLYDHRL 406 (513)
Q Consensus 330 ~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~-dg--~i~lwd~~~ 406 (513)
... +..+.. +.....|+|+|+.|+..+. .+ .|.+.|+.
T Consensus 269 ~~~----LT~~~~----------------------------------~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~- 309 (419)
T PRK04043 269 LTQ----ITNYPG----------------------------------IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLN- 309 (419)
T ss_pred EEE----cccCCC----------------------------------ccCccEECCCCCEEEEEECCCCCceEEEEECC-
Confidence 322 221111 0011358899987776653 33 46666764
Q ss_pred CCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCC---------CcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCc
Q 037288 407 TTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGED---------CKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRS 476 (513)
Q Consensus 407 ~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~D---------g~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~ 476 (513)
.+....+..... .. ..|+|||++|+..+.. ..|.+.|+.+++. ..+... .......|+|++.
T Consensus 310 --~g~~~rlt~~g~--~~--~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~ 380 (419)
T PRK04043 310 --SGSVEQVVFHGK--NN--SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGG 380 (419)
T ss_pred --CCCeEeCccCCC--cC--ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCC
Confidence 333322321111 12 4789999988766543 3688889888865 334332 2334689999964
No 268
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.53 E-value=1.1e-06 Score=81.13 Aligned_cols=171 Identities=12% Similarity=0.139 Sum_probs=106.4
Q ss_pred CcEEEEEEcCCCC---EEEEEeCCeEEEEECCCCc-----------------------------------EEEEee--eC
Q 037288 257 CTVWTADFCTNPS---QAVIGTNLGAAMVDMETGM-----------------------------------ASWVCR--SK 296 (513)
Q Consensus 257 ~~V~~~~~s~~g~---~l~s~s~~~i~vwd~~~~~-----------------------------------~~~~~~--~~ 296 (513)
..|+.+.|.+++. +|+++.|.+|++|-+.... +.+.+. |.
T Consensus 85 EKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHt 164 (433)
T KOG1354|consen 85 EKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHT 164 (433)
T ss_pred hhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccce
Confidence 5788999998765 6667788889999764321 111122 44
Q ss_pred CCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCC
Q 037288 297 SDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSS 376 (513)
Q Consensus 297 ~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~ 376 (513)
--|.++.++.|+..++++ .|=.|.+|.+.-......+.-+..+ ..-....-
T Consensus 165 yhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~----------------------------nmEeLteV 215 (433)
T KOG1354|consen 165 YHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPA----------------------------NMEELTEV 215 (433)
T ss_pred eEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEcccc----------------------------CHHHHHHH
Confidence 568999999999988887 5889999988644321101011111 00001111
Q ss_pred ceEEEEEcC-CCCEEEEEecCCeEEEEecCCCCcc-c---eEEecCC------------CCceeEEEEEEcCCCCEEEEE
Q 037288 377 ISCLQSLQL-YDQYFLASSMDGTVKLYDHRLTTRG-A---VQSYEGH------------VNSHTRIQLGVDQSERFVMSG 439 (513)
Q Consensus 377 v~~~~~~~~-~~~~l~s~s~dg~i~lwd~~~~~~~-~---~~~~~~h------------~~~v~~~~~~~s~~g~~l~sg 439 (513)
|++ ..|+| .-+.|+.++..|+|++.|+| +.. | .+.|+.. ...|. ++.|+.+|+++++-
T Consensus 216 ITs-aEFhp~~cn~f~YSSSKGtIrLcDmR--~~aLCd~hsKlfEepedp~~rsffseiIsSIS--DvKFs~sGryilsR 290 (433)
T KOG1354|consen 216 ITS-AEFHPHHCNVFVYSSSKGTIRLCDMR--QSALCDAHSKLFEEPEDPSSRSFFSEIISSIS--DVKFSHSGRYILSR 290 (433)
T ss_pred Hhh-hccCHhHccEEEEecCCCcEEEeech--hhhhhcchhhhhccccCCcchhhHHHHhhhhh--ceEEccCCcEEEEe
Confidence 222 23443 45788889999999999998 322 1 1112111 12333 37899999999976
Q ss_pred eCCCcEEEEeC-CCCeEEEEecCC
Q 037288 440 GEDCKLRIWSI-RSGELVFEDKFS 462 (513)
Q Consensus 440 ~~Dg~v~vwd~-~~~~~~~~~~~~ 462 (513)
.. -+|++||+ ...+++.++..|
T Consensus 291 Dy-ltvk~wD~nme~~pv~t~~vh 313 (433)
T KOG1354|consen 291 DY-LTVKLWDLNMEAKPVETYPVH 313 (433)
T ss_pred cc-ceeEEEeccccCCcceEEeeh
Confidence 54 57999999 556777776655
No 269
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.53 E-value=1.6e-05 Score=76.57 Aligned_cols=163 Identities=7% Similarity=0.039 Sum_probs=120.3
Q ss_pred CCCEEEEEeCCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCC-eEEEEECCCCccccccccccccCcCeE
Q 037288 267 NPSQAVIGTNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNG-AIVTVDVRKRQRGCSSRAGRRHRIPYS 345 (513)
Q Consensus 267 ~g~~l~s~s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg-~i~iwd~~~~~~~~~~~~~~~h~~~v~ 345 (513)
+|.+++..+.+.+.|.+...+-.+. +.+...|.-..+..+++-++.|..|| .+-|+|.++++ ++.+...-+.|.
T Consensus 331 ~Gd~ia~VSRGkaFi~~~~~~~~iq-v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e----~kr~e~~lg~I~ 405 (668)
T COG4946 331 NGDYIALVSRGKAFIMRPWDGYSIQ-VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE----VKRIEKDLGNIE 405 (668)
T ss_pred CCcEEEEEecCcEEEECCCCCeeEE-cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce----EEEeeCCccceE
Confidence 7899999999998887776554443 55777798888888888899999999 99999999886 234444444444
Q ss_pred EEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecC-CCCceeE
Q 037288 346 RLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEG-HVNSHTR 424 (513)
Q Consensus 346 ~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~-h~~~v~~ 424 (513)
+ +..+++|++++++.....+.++|+. ++.++.+.. ..+.+
T Consensus 406 a----------------------------------v~vs~dGK~~vvaNdr~el~vidid---ngnv~~idkS~~~lI-- 446 (668)
T COG4946 406 A----------------------------------VKVSPDGKKVVVANDRFELWVIDID---NGNVRLIDKSEYGLI-- 446 (668)
T ss_pred E----------------------------------EEEcCCCcEEEEEcCceEEEEEEec---CCCeeEeccccccee--
Confidence 4 4678899999999999999999995 555555542 23344
Q ss_pred EEEEEcCCCCEEEEEeCCC----cEEEEeCCCCeEEEEecCCCCCeEEEEEcCC
Q 037288 425 IQLGVDQSERFVMSGGEDC----KLRIWSIRSGELVFEDKFSNSVPSAVCWRTQ 474 (513)
Q Consensus 425 ~~~~~s~~g~~l~sg~~Dg----~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~ 474 (513)
..++|+|+++|+|-+--+| .|+++|+.+++....... .+--.+-+|.|+
T Consensus 447 tdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~-ta~DfsPaFD~d 499 (668)
T COG4946 447 TDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTP-TAYDFSPAFDPD 499 (668)
T ss_pred EEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCC-cccccCcccCCC
Confidence 4499999999999876655 689999999887665322 222345567777
No 270
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.52 E-value=2.1e-06 Score=76.39 Aligned_cols=94 Identities=13% Similarity=0.084 Sum_probs=70.2
Q ss_pred CeEEEEECCCCcEEEE-eeeCCCeEEEEEecCC-cEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEE
Q 037288 277 LGAAMVDMETGMASWV-CRSKSDILAQQVIHSG-NVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVT 354 (513)
Q Consensus 277 ~~i~vwd~~~~~~~~~-~~~~~~V~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~ 354 (513)
+..++|+++....... ......|.+++-+|.. +++++|+.||.+-+||.|+... + +..+..|+.+++.+.|+|
T Consensus 159 d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~-p-~S~l~ahk~~i~eV~FHp--- 233 (319)
T KOG4714|consen 159 DNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAM-P-VSLLKAHKAEIWEVHFHP--- 233 (319)
T ss_pred cceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccc-h-HHHHHHhhhhhhheeccC---
Confidence 4456677654332211 1123349999999854 7899999999999999998843 3 667899999999988876
Q ss_pred EeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecC
Q 037288 355 NEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHR 405 (513)
Q Consensus 355 s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~ 405 (513)
.++..|.+++.||.+-.||..
T Consensus 234 ------------------------------k~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 234 ------------------------------KNPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred ------------------------------CCchheeEecCCCcEEEEcCC
Confidence 467788889999999999864
No 271
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.50 E-value=0.00011 Score=71.25 Aligned_cols=212 Identities=8% Similarity=0.024 Sum_probs=123.4
Q ss_pred EcCCCCEEEEEe-----------CCeEEEEECCCCcEEEEeeeCCC--------eEEEEEecCCcEEEEEe-C-CCeEEE
Q 037288 264 FCTNPSQAVIGT-----------NLGAAMVDMETGMASWVCRSKSD--------ILAQQVIHSGNVVLCGF-R-NGAIVT 322 (513)
Q Consensus 264 ~s~~g~~l~s~s-----------~~~i~vwd~~~~~~~~~~~~~~~--------V~~l~~~~~~~~l~sg~-~-dg~i~i 322 (513)
++|||+.+..+. ++.|.+||+.+.+.+..+..... ...++++|||++|++.. . +..|.+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 899999777553 35699999999998877764322 34788999999888775 3 699999
Q ss_pred EECCCCccccccccccccCcCeEEEeeCC-eEE----EeEeec----ccCc-ccceeEeecC--CCceEEEEEcC-CCCE
Q 037288 323 VDVRKRQRGCSSRAGRRHRIPYSRLQRND-RVT----NEQWFE----LKAN-IWPSHTTFMP--SSISCLQSLQL-YDQY 389 (513)
Q Consensus 323 wd~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~----s~~w~~----~~~~-~~~~~~~~~~--~~v~~~~~~~~-~~~~ 389 (513)
.|+.+++... .+.-.. ...-...++ .+. .|++.. ..++ ......+.+. ..+-.--.+.+ ++.+
T Consensus 133 vD~~~~kvv~---ei~vp~-~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~ 208 (352)
T TIGR02658 133 VDLEGKAFVR---MMDVPD-CYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRL 208 (352)
T ss_pred EECCCCcEEE---EEeCCC-CcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcE
Confidence 9999887643 222111 111111111 000 011100 0000 0001111111 00000001233 7777
Q ss_pred EEEEecCCeEEEEecCCCCcc---ceEEecC-------CCCceeEEEEEEcCCCCEEEEEeC----------CCcEEEEe
Q 037288 390 FLASSMDGTVKLYDHRLTTRG---AVQSYEG-------HVNSHTRIQLGVDQSERFVMSGGE----------DCKLRIWS 449 (513)
Q Consensus 390 l~s~s~dg~i~lwd~~~~~~~---~~~~~~~-------h~~~v~~~~~~~s~~g~~l~sg~~----------Dg~v~vwd 449 (513)
+.+... |.|.+.|+...... ....+.. ..+.... ++++++++.++.... .+.|.++|
T Consensus 209 ~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~--ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD 285 (352)
T TIGR02658 209 VWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQ--VAYHRARDRIYLLADQRAKWTHKTASRFLFVVD 285 (352)
T ss_pred EEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCccee--EEEcCCCCEEEEEecCCccccccCCCCEEEEEE
Confidence 766665 99999996421111 2222211 1222223 889999998887431 25799999
Q ss_pred CCCCeEEEEecCCCCCeEEEEEcCCC--ceEEeeCC
Q 037288 450 IRSGELVFEDKFSNSVPSAVCWRTQR--SMGPQIEG 483 (513)
Q Consensus 450 ~~~~~~~~~~~~~~~~v~~v~~~p~~--~~~~t~~~ 483 (513)
..+++.+..+.. +..+..++++|++ .++++.+.
T Consensus 286 ~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~ 320 (352)
T TIGR02658 286 AKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTG 320 (352)
T ss_pred CCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCC
Confidence 999999999875 4578999999994 45556643
No 272
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.49 E-value=2.8e-05 Score=69.63 Aligned_cols=176 Identities=7% Similarity=-0.030 Sum_probs=109.3
Q ss_pred EEEEEeCCeEEEEECCCCcEEEEeeeC-CCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEe
Q 037288 270 QAVIGTNLGAAMVDMETGMASWVCRSK-SDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQ 348 (513)
Q Consensus 270 ~l~s~s~~~i~vwd~~~~~~~~~~~~~-~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~ 348 (513)
.+.+.-|.++++.+++-+......... -.+.++.+++|+.++++.+....|..|.+....... ++...
T Consensus 131 ~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~-~~~~~---------- 199 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYI-ENIYE---------- 199 (344)
T ss_pred eeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCcccee-eeeEe----------
Confidence 333444556888877654432222211 238899999999999999999999999987654322 11000
Q ss_pred eCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceE----EecCCCCceeE
Q 037288 349 RNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQ----SYEGHVNSHTR 424 (513)
Q Consensus 349 ~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~----~~~~h~~~v~~ 424 (513)
....+..-+ ..|+.....||+++.||++.|||+|.... +.. +-..|.+.+..
T Consensus 200 ----------------------a~t~D~gF~-~S~s~~~~~FAv~~Qdg~~~I~DVR~~~t-pm~~~sstrp~hnGa~R~ 255 (344)
T KOG4532|consen 200 ----------------------APTSDHGFY-NSFSENDLQFAVVFQDGTCAIYDVRNMAT-PMAEISSTRPHHNGAFRV 255 (344)
T ss_pred ----------------------cccCCCcee-eeeccCcceEEEEecCCcEEEEEeccccc-chhhhcccCCCCCCceEE
Confidence 000111111 36777888999999999999999994322 222 22347777766
Q ss_pred EEEEEcCCC--CEEEEEeCCCcEEEEeCCCCeEEEEecCC--------CCCeEEEEEcCC-CceEEeeC
Q 037288 425 IQLGVDQSE--RFVMSGGEDCKLRIWSIRSGELVFEDKFS--------NSVPSAVCWRTQ-RSMGPQIE 482 (513)
Q Consensus 425 ~~~~~s~~g--~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~--------~~~v~~v~~~p~-~~~~~t~~ 482 (513)
+.|++-| .+|+-.-.-+.+.+-|++++...+.+... ...+..-+|+.+ ...++..+
T Consensus 256 --c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e 322 (344)
T KOG4532|consen 256 --CRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNE 322 (344)
T ss_pred --EEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccc
Confidence 7788755 34555555678999999998766553222 223666666655 33444433
No 273
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.47 E-value=6.7e-05 Score=82.49 Aligned_cols=212 Identities=13% Similarity=0.113 Sum_probs=128.6
Q ss_pred cCcEEEEEEcCCCCEEEEEe-CCeEEEE----ECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCcc
Q 037288 256 KCTVWTADFCTNPSQAVIGT-NLGAAMV----DMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQR 330 (513)
Q Consensus 256 ~~~V~~~~~s~~g~~l~s~s-~~~i~vw----d~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~ 330 (513)
...|.++.+.++...++.+. +|-|.+. |..+......-.-...|.+++|+||+.+|+..+.++++.+.+.. ...
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~-fd~ 153 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRD-FDP 153 (928)
T ss_pred CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEecc-ceE
Confidence 36899999999888777664 4557777 55555444434467889999999999999999999999887532 222
Q ss_pred ccccccccccCcCeEEEeeCC-eEEEeEeecccCccc-------------ce------eEeecCCCceEEEEEcCCCCEE
Q 037288 331 GCSSRAGRRHRIPYSRLQRND-RVTNEQWFELKANIW-------------PS------HTTFMPSSISCLQSLQLYDQYF 390 (513)
Q Consensus 331 ~~~~~~~~~h~~~v~~v~~~~-~~~s~~w~~~~~~~~-------------~~------~~~~~~~~v~~~~~~~~~~~~l 390 (513)
.. ... +..-+|.. ..++.+|-..+.+.. +. ..+...+.- ...+|..||.+|
T Consensus 154 i~---E~~-----l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~-~~ISWRGDG~yF 224 (928)
T PF04762_consen 154 IS---EVP-----LDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGR-VRISWRGDGEYF 224 (928)
T ss_pred EE---Eee-----cCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCc-eEEEECCCCcEE
Confidence 11 111 01111111 334444443332211 11 011122222 335788999999
Q ss_pred EEEec---C---CeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeC---CCcEEEEeCCCCeEEEEec-
Q 037288 391 LASSM---D---GTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGE---DCKLRIWSIRSGELVFEDK- 460 (513)
Q Consensus 391 ~s~s~---d---g~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~---Dg~v~vwd~~~~~~~~~~~- 460 (513)
|+.+. + ..+++|+- + +.+..-....... .-.++|-|.|++||+... .-.|.+|. ++|-....|.
T Consensus 225 AVss~~~~~~~~R~iRVy~R---e-G~L~stSE~v~gL-e~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l 298 (928)
T PF04762_consen 225 AVSSVEPETGSRRVIRVYSR---E-GELQSTSEPVDGL-EGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTL 298 (928)
T ss_pred EEEEEEcCCCceeEEEEECC---C-ceEEeccccCCCc-cCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEec
Confidence 99885 3 46889984 2 3232222111111 123899999999988765 34577777 5665555443
Q ss_pred ---CCCCCeEEEEEcCCCceEEeeCC
Q 037288 461 ---FSNSVPSAVCWRTQRSMGPQIEG 483 (513)
Q Consensus 461 ---~~~~~v~~v~~~p~~~~~~t~~~ 483 (513)
.....|..++|++++.+||-.-.
T Consensus 299 ~~~~~~~~v~~l~Wn~ds~iLAv~~~ 324 (928)
T PF04762_consen 299 RFDPEEEKVIELAWNSDSEILAVWLE 324 (928)
T ss_pred CCCCCCceeeEEEECCCCCEEEEEec
Confidence 34567999999999877666544
No 274
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.44 E-value=7.1e-06 Score=82.57 Aligned_cols=223 Identities=13% Similarity=0.081 Sum_probs=132.0
Q ss_pred cCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeCCe-EEEEECCCCcEEEEeeeCC-
Q 037288 220 ETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNLG-AAMVDMETGMASWVCRSKS- 297 (513)
Q Consensus 220 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~~-i~vwd~~~~~~~~~~~~~~- 297 (513)
.+++|-+-+|-++...=. .. ..-......|.+++|+.+|..++....++ |.+=.++ |..++-..-++
T Consensus 89 SDt~GlIiVWmlykgsW~-------EE---MiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvd-GNRIwgKeLkg~ 157 (1189)
T KOG2041|consen 89 SDTSGLIIVWMLYKGSWC-------EE---MINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVD-GNRIWGKELKGQ 157 (1189)
T ss_pred cCCCceEEEEeeecccHH-------HH---HhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeec-cceecchhcchh
Confidence 456777777777643211 00 00122346789999999999998876554 5554444 33333222222
Q ss_pred CeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEE-eeCC---eEEEeEeecccCcccceeEeec
Q 037288 298 DILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRL-QRND---RVTNEQWFELKANIWPSHTTFM 373 (513)
Q Consensus 298 ~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v-~~~~---~~~s~~w~~~~~~~~~~~~~~~ 373 (513)
....+.|++|...++.+-.+|.+.++|....-... +.- ...|+.- .|+. ++..-.|....
T Consensus 158 ~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~K----l~~-~c~Vn~tg~~s~~~~kia~i~w~~g~----------- 221 (1189)
T KOG2041|consen 158 LLAHVLWSEDLEQALFKKANGETHLYDNQGNFERK----LEK-DCEVNGTGIFSNFPTKIAEIEWNTGP----------- 221 (1189)
T ss_pred eccceeecccHHHHHhhhcCCcEEEecccccHHHh----hhh-ceEEeeeeeecCCCccccceeeccCc-----------
Confidence 24578899999988888889999999976432111 000 0001000 0000 11111111110
Q ss_pred CCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCC---------c
Q 037288 374 PSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDC---------K 444 (513)
Q Consensus 374 ~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg---------~ 444 (513)
. .-..|+-..|+++-.+|.+.|..-.. +..++..-.+ ...+...|+++|..|+.+|.|. .
T Consensus 222 ---~---~~v~pdrP~lavcy~nGr~QiMR~eN-D~~Pvv~dtg----m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~ 290 (1189)
T KOG2041|consen 222 ---Y---QPVPPDRPRLAVCYANGRMQIMRSEN-DPEPVVVDTG----MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNK 290 (1189)
T ss_pred ---c---ccCCCCCCEEEEEEcCceehhhhhcC-CCCCeEEecc----cEeecceecCCCcEEEEccCcccccCccccce
Confidence 0 12356888999999999998865421 1224332222 2234478999999999988642 5
Q ss_pred EEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEee
Q 037288 445 LRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQI 481 (513)
Q Consensus 445 v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~ 481 (513)
|.++. .-|+.+.+++..+..|++++|-..+.-+|-.
T Consensus 291 v~Fys-p~G~i~gtlkvpg~~It~lsWEg~gLriA~A 326 (1189)
T KOG2041|consen 291 VHFYS-PYGHIVGTLKVPGSCITGLSWEGTGLRIAIA 326 (1189)
T ss_pred EEEec-cchhheEEEecCCceeeeeEEcCCceEEEEE
Confidence 66666 4678888999989999999999886544433
No 275
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=1.5e-05 Score=75.34 Aligned_cols=219 Identities=12% Similarity=0.053 Sum_probs=126.1
Q ss_pred EEeccccCcEEEEEEcCCCC-EEEEEe-CCeEEEEECCCCcEEEEeeeCCCeEEEEEecCC-cEEEEEeCCCeEEEEECC
Q 037288 250 HLVASFKCTVWTADFCTNPS-QAVIGT-NLGAAMVDMETGMASWVCRSKSDILAQQVIHSG-NVVLCGFRNGAIVTVDVR 326 (513)
Q Consensus 250 ~~~~~h~~~V~~~~~s~~g~-~l~s~s-~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~-~~l~sg~~dg~i~iwd~~ 326 (513)
+.+.+|...|.+++|+|..+ ++..++ +..|+|.|+++...+..+.....+++++|.-|. ++|++|..+|.|.|||++
T Consensus 187 q~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R 266 (463)
T KOG1645|consen 187 QILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMR 266 (463)
T ss_pred hcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence 34778889999999999777 555665 556999999999888888777899999999876 899999999999999999
Q ss_pred CCccccccccccc--cCcCeEEEeeCC--------eEEEeE------eecccCcccceeEeec--CCCceEEEEEcCCCC
Q 037288 327 KRQRGCSSRAGRR--HRIPYSRLQRND--------RVTNEQ------WFELKANIWPSHTTFM--PSSISCLQSLQLYDQ 388 (513)
Q Consensus 327 ~~~~~~~~~~~~~--h~~~v~~v~~~~--------~~~s~~------w~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~ 388 (513)
..+.. +..+.+ ...+|..++.-+ -++++. |........+...... ++...++ ...+..+
T Consensus 267 ~~~~~--~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~l~f~ei~~s~~~~p~vlele~pG~cism-qy~~~sn 343 (463)
T KOG1645|consen 267 QPEGP--LMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTVLQFYEIVFSAECLPCVLELEPPGICISM-QYHGVSN 343 (463)
T ss_pred CCCch--HhhhhhhhccCcceeecccCccccccccceEEeeehhhhhhhhhccccCCCcccccCCCcceeee-eecCccc
Confidence 87653 223333 344555544432 333333 6654433222222222 2222232 2222222
Q ss_pred -EEEEEecCC------eEEE-EecCCCCccceE-EecCCCCc----eeEEEEEE-cCCCCEEE-EEeCCCcEEEEeCCCC
Q 037288 389 -YFLASSMDG------TVKL-YDHRLTTRGAVQ-SYEGHVNS----HTRIQLGV-DQSERFVM-SGGEDCKLRIWSIRSG 453 (513)
Q Consensus 389 -~l~s~s~dg------~i~l-wd~~~~~~~~~~-~~~~h~~~----v~~~~~~~-s~~g~~l~-sg~~Dg~v~vwd~~~~ 453 (513)
.|++.-.+. .|-. -|.+ ...++. .-.+|.+. ......-+ .++.++|+ .|..-+.+.+||..+.
T Consensus 344 h~l~tyRs~pn~p~~r~il~~~d~~--dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~ 421 (463)
T KOG1645|consen 344 HLLLTYRSNPNFPQSRFILGRIDFR--DGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSF 421 (463)
T ss_pred eEEEEecCCCCCccceeeeeeeccc--cCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchh
Confidence 222222110 0000 0110 111111 01111110 00001112 24455554 4555678999999999
Q ss_pred eEEEEecCCCCCeEEEEEcCC
Q 037288 454 ELVFEDKFSNSVPSAVCWRTQ 474 (513)
Q Consensus 454 ~~~~~~~~~~~~v~~v~~~p~ 474 (513)
+.++++... .+|..++...-
T Consensus 422 evvQ~l~~~-epv~Dicp~~~ 441 (463)
T KOG1645|consen 422 EVVQTLALS-EPVLDICPNDT 441 (463)
T ss_pred heeeecccC-cceeecceeec
Confidence 999998764 67888776644
No 276
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.42 E-value=1.1e-06 Score=78.19 Aligned_cols=139 Identities=17% Similarity=0.199 Sum_probs=86.5
Q ss_pred CCcEEEEEeCCCeEEEEECCCCcccccccccc-ccCcCeEEEeeCC---eEEEeE---eecccCc----ccceeEe----
Q 037288 307 SGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGR-RHRIPYSRLQRND---RVTNEQ---WFELKAN----IWPSHTT---- 371 (513)
Q Consensus 307 ~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~-~h~~~v~~v~~~~---~~~s~~---w~~~~~~----~~~~~~~---- 371 (513)
.++-++++..||.+.+++.+...... .... .|.+. .+..... .+.++. |...... ..+..++
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~~~~--~~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~ 176 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDLALM--SRIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSK 176 (319)
T ss_pred cCCceEecCCCceEEEEechHHHhhh--hhcccccccc-cccceeecccEEecCCcceEeeccceeeecccccccccccc
Confidence 46779999999999999987632111 1111 11111 1111111 233332 3322211 1111111
Q ss_pred ecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCcc-ceEEecCCCCceeEEEEEEcC-CCCEEEEEeCCCcEEEEe
Q 037288 372 FMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRG-AVQSYEGHVNSHTRIQLGVDQ-SERFVMSGGEDCKLRIWS 449 (513)
Q Consensus 372 ~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~-~~~~~~~h~~~v~~~~~~~s~-~g~~l~sg~~Dg~v~vwd 449 (513)
.....+.++...+.+.+.+++|+.||.+-+||.| ... +...+..|..++.- +.|+| ++..|+++++||.+.-||
T Consensus 177 ~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~r--n~~~p~S~l~ahk~~i~e--V~FHpk~p~~Lft~sedGslw~wd 252 (319)
T KOG4714|consen 177 KALDAVTALCSHPAQQHLVCCGTDDGIVGLWDAR--NVAMPVSLLKAHKAEIWE--VHFHPKNPEHLFTCSEDGSLWHWD 252 (319)
T ss_pred cccccchhhhCCcccccEEEEecCCCeEEEEEcc--cccchHHHHHHhhhhhhh--eeccCCCchheeEecCCCcEEEEc
Confidence 1223466665555567788889999999999998 433 67778899998877 89998 467899999999999999
Q ss_pred CCC
Q 037288 450 IRS 452 (513)
Q Consensus 450 ~~~ 452 (513)
..+
T Consensus 253 as~ 255 (319)
T KOG4714|consen 253 AST 255 (319)
T ss_pred CCC
Confidence 765
No 277
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.41 E-value=1.2e-06 Score=88.35 Aligned_cols=213 Identities=13% Similarity=0.083 Sum_probs=141.4
Q ss_pred CcEEEEEEcCCCCEEEEEeCCeEEEEECCCC-cEEEEeeeCC--CeEEEEEecCC--cEEEEEeCCCeEEEEECCCCccc
Q 037288 257 CTVWTADFCTNPSQAVIGTNLGAAMVDMETG-MASWVCRSKS--DILAQQVIHSG--NVVLCGFRNGAIVTVDVRKRQRG 331 (513)
Q Consensus 257 ~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~-~~~~~~~~~~--~V~~l~~~~~~--~~l~sg~~dg~i~iwd~~~~~~~ 331 (513)
+.+.++.++|.|+-+|.++.-++.+.|+... .+-+.+.|-. .|-.++|+|.. .+-++......-.+|++......
T Consensus 25 ~~~~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~ 104 (1081)
T KOG0309|consen 25 GGFNAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSN 104 (1081)
T ss_pred CcccceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCcc
Confidence 5788999999999999998888888888754 3333344333 38888999865 34455556677788998765543
Q ss_pred cccccccccCcCeEEEeeCC----eEEEeE-------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEE
Q 037288 332 CSSRAGRRHRIPYSRLQRND----RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVK 400 (513)
Q Consensus 332 ~~~~~~~~h~~~v~~v~~~~----~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~ 400 (513)
..-..+-+|..+|+.+.|++ .+.+++ |+.+..+........-......+.+.-.+++ +++.+....|.
T Consensus 105 aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~-vlasshg~~i~ 183 (1081)
T KOG0309|consen 105 AIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPN-VLASSHGNDIF 183 (1081)
T ss_pred ceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcc-hhhhccCCceE
Confidence 32236789999999999998 333443 8888766432222222333444433333444 44556677899
Q ss_pred EEecCCCCcc-ceEEecCCCCceeEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeEEEE-ecCCCCCeEEEEEcCC
Q 037288 401 LYDHRLTTRG-AVQSYEGHVNSHTRIQLGVDQ-SERFVMSGGEDCKLRIWSIRSGELVFE-DKFSNSVPSAVCWRTQ 474 (513)
Q Consensus 401 lwd~~~~~~~-~~~~~~~h~~~v~~~~~~~s~-~g~~l~sg~~Dg~v~vwd~~~~~~~~~-~~~~~~~v~~v~~~p~ 474 (513)
+||+| ... ++..+++|...+.. ++|.. ....+++.+.||+|++||......... ....+.+|..-++-|-
T Consensus 184 vwd~r--~gs~pl~s~K~~vs~vn~--~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pf 256 (1081)
T KOG0309|consen 184 VWDLR--KGSTPLCSLKGHVSSVNS--IDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPF 256 (1081)
T ss_pred EEecc--CCCcceEEecccceeeeh--HHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceecccccc
Confidence 99998 444 88899999888777 55543 234688999999999999865432111 1223556666666665
No 278
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.39 E-value=6.5e-07 Score=82.56 Aligned_cols=127 Identities=13% Similarity=0.103 Sum_probs=95.0
Q ss_pred ccCcEEEEEEcCCCCEEEEEeC-CeEEEEECCCC-----cEEEEeeeCCCeEEEEEec-CCcEEEEEeCCCeEEEEECCC
Q 037288 255 FKCTVWTADFCTNPSQAVIGTN-LGAAMVDMETG-----MASWVCRSKSDILAQQVIH-SGNVVLCGFRNGAIVTVDVRK 327 (513)
Q Consensus 255 h~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~-----~~~~~~~~~~~V~~l~~~~-~~~~l~sg~~dg~i~iwd~~~ 327 (513)
....|.++.|...+.++..|.. +.|.+.|++.+ .+...+-|.+.|++++.-. +++.|++.+.+|+|++||+|.
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~ 330 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA 330 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehh
Confidence 4568899999988888888765 55999999865 3566667999999998776 788999999999999999998
Q ss_pred CccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCC
Q 037288 328 RQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLT 407 (513)
Q Consensus 328 ~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~ 407 (513)
-+....+..+.+|...-.-+. .-..+....+++++.|...+||.++
T Consensus 331 ~K~~~~V~qYeGHvN~~a~l~--------------------------------~~v~~eeg~I~s~GdDcytRiWsl~-- 376 (425)
T KOG2695|consen 331 TKCKKSVMQYEGHVNLSAYLP--------------------------------AHVKEEEGSIFSVGDDCYTRIWSLD-- 376 (425)
T ss_pred hhcccceeeeecccccccccc--------------------------------cccccccceEEEccCeeEEEEEecc--
Confidence 776444567777733221111 2345667788889999999999997
Q ss_pred CccceEEe
Q 037288 408 TRGAVQSY 415 (513)
Q Consensus 408 ~~~~~~~~ 415 (513)
....+.++
T Consensus 377 ~ghLl~ti 384 (425)
T KOG2695|consen 377 SGHLLCTI 384 (425)
T ss_pred cCceeecc
Confidence 44444444
No 279
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.37 E-value=1.3e-06 Score=55.74 Aligned_cols=37 Identities=27% Similarity=0.647 Sum_probs=34.8
Q ss_pred ceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 037288 411 AVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWS 449 (513)
Q Consensus 411 ~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd 449 (513)
++.++.+|.+.|.+ ++|+|++.+|++|+.|+.|++||
T Consensus 3 ~~~~~~~h~~~i~~--i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINS--IAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEE--EEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEE--EEEecccccceeeCCCCEEEEEC
Confidence 67889999999988 89999999999999999999997
No 280
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.33 E-value=0.00018 Score=65.55 Aligned_cols=194 Identities=10% Similarity=0.003 Sum_probs=112.3
Q ss_pred EEEEEcCCCCEEEEE-eCCeEEEEECCCCcEEEEee--------eCCCeEEEEEecCC------cEEEEEeCCCeEEEEE
Q 037288 260 WTADFCTNPSQAVIG-TNLGAAMVDMETGMASWVCR--------SKSDILAQQVIHSG------NVVLCGFRNGAIVTVD 324 (513)
Q Consensus 260 ~~~~~s~~g~~l~s~-s~~~i~vwd~~~~~~~~~~~--------~~~~V~~l~~~~~~------~~l~sg~~dg~i~iwd 324 (513)
..++||||+.+||.+ +.++|+++|+..... ..+. -...|..+.|-+.. ..|++-..+|.++-|-
T Consensus 47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l-f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~ 125 (282)
T PF15492_consen 47 RKLAWSPDCTLLAYAESTGTIRVFDLMGSEL-FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYL 125 (282)
T ss_pred eEEEECCCCcEEEEEcCCCeEEEEeccccee-EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEE
Confidence 578999999999977 667799999985432 2222 12346777776422 2566667888888887
Q ss_pred CCCCcc-----ccccccccc-cCcCeEEEeeCC---eEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEec
Q 037288 325 VRKRQR-----GCSSRAGRR-HRIPYSRLQRND---RVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSM 395 (513)
Q Consensus 325 ~~~~~~-----~~~~~~~~~-h~~~v~~v~~~~---~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~ 395 (513)
+..+.. .. ...+.. +...|.++.++| .++.|++........ .....++++-+.++....+..+.+.
T Consensus 126 vs~gt~q~y~e~h-sfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s----~a~~~GLtaWRiL~~~Pyyk~v~~~ 200 (282)
T PF15492_consen 126 VSVGTNQGYQENH-SFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMS----KASSCGLTAWRILSDSPYYKQVTSS 200 (282)
T ss_pred EEcccCCcceeeE-EEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccc----cccccCceEEEEcCCCCcEEEcccc
Confidence 643211 11 112223 366889999988 455555443322110 0112233443444444444433333
Q ss_pred CCeEE-------EEecCCCCccceEEecC-CCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCC
Q 037288 396 DGTVK-------LYDHRLTTRGAVQSYEG-HVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNS 464 (513)
Q Consensus 396 dg~i~-------lwd~~~~~~~~~~~~~~-h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~ 464 (513)
+..+. +|.+- .. .+....+ ..+.| ..+..||||..|++...+|.|.+|++.+-.+......++.
T Consensus 201 ~~~~~~~~~~~~~~~~~--~~-~~fs~~~~~~d~i--~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~eq 272 (282)
T PF15492_consen 201 EDDITASSKRRGLLRIP--SF-KFFSRQGQEQDGI--FKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDEQ 272 (282)
T ss_pred Cccccccccccceeecc--ce-eeeeccccCCCce--EEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchhhC
Confidence 22221 22211 10 1111111 23344 4588999999999999999999999999888877655443
No 281
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.31 E-value=0.0002 Score=72.27 Aligned_cols=154 Identities=11% Similarity=0.048 Sum_probs=93.4
Q ss_pred ccCcEEEEEEcCCCCEEEEEe--C--CeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEe-CCC--eEEEEECCC
Q 037288 255 FKCTVWTADFCTNPSQAVIGT--N--LGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGF-RNG--AIVTVDVRK 327 (513)
Q Consensus 255 h~~~V~~~~~s~~g~~l~s~s--~--~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~-~dg--~i~iwd~~~ 327 (513)
..+.+...+|+|||+.++... + ..|.++|+.++....+..+........|+|||+.|+-.+ ..+ .|.+.|+..
T Consensus 231 ~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~ 310 (419)
T PRK04043 231 SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS 310 (419)
T ss_pred CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 445566788999999777543 2 248888998887666555444345668999996554443 333 577777776
Q ss_pred CccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecC---------Ce
Q 037288 328 RQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMD---------GT 398 (513)
Q Consensus 328 ~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~d---------g~ 398 (513)
++... +... +. .. ..++|+|++++..+.. ..
T Consensus 311 g~~~r----lt~~----------------------------------g~-~~-~~~SPDG~~Ia~~~~~~~~~~~~~~~~ 350 (419)
T PRK04043 311 GSVEQ----VVFH----------------------------------GK-NN-SSVSTYKNYIVYSSRETNNEFGKNTFN 350 (419)
T ss_pred CCeEe----CccC----------------------------------CC-cC-ceECCCCCEEEEEEcCCCcccCCCCcE
Confidence 55321 1000 00 00 2578899988876654 26
Q ss_pred EEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCC-C--cEEEEeCCCCe
Q 037288 399 VKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGED-C--KLRIWSIRSGE 454 (513)
Q Consensus 399 i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~D-g--~v~vwd~~~~~ 454 (513)
|.+.|+. .+....+.... ... ...|+|||+.|+....+ + .+.+.++....
T Consensus 351 I~v~d~~---~g~~~~LT~~~-~~~--~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~ 403 (419)
T PRK04043 351 LYLISTN---SDYIRRLTANG-VNQ--FPRFSSDGGSIMFIKYLGNQSALGIIRLNYNK 403 (419)
T ss_pred EEEEECC---CCCeEECCCCC-CcC--CeEECCCCCEEEEEEccCCcEEEEEEecCCCe
Confidence 7777874 33344454332 111 26899999988765543 2 36666765543
No 282
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.31 E-value=0.00023 Score=68.84 Aligned_cols=186 Identities=13% Similarity=0.113 Sum_probs=128.1
Q ss_pred eccccC--cEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEe-e------eCCC--eE---EE-EEec-CCcEEEEEe
Q 037288 252 VASFKC--TVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVC-R------SKSD--IL---AQ-QVIH-SGNVVLCGF 315 (513)
Q Consensus 252 ~~~h~~--~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~-~------~~~~--V~---~l-~~~~-~~~~l~sg~ 315 (513)
+..|++ .-++-..+.||+.++....+.|.++|.++.....+- . .+.+ +. -+ .|++ +|.+++..+
T Consensus 260 lrrHTnFtdYY~R~~nsDGkrIvFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS 339 (668)
T COG4946 260 LRRHTNFTDYYPRNANSDGKRIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS 339 (668)
T ss_pred hhhcCCchhccccccCCCCcEEEEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe
Confidence 344443 334555677999999887788999998877543321 1 0111 11 11 1343 678888776
Q ss_pred CCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEec
Q 037288 316 RNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSM 395 (513)
Q Consensus 316 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~ 395 (513)
+ |...+.+...+-.++ .+|.+.|.- ..+..+++-++.|..
T Consensus 340 R-GkaFi~~~~~~~~iq-----v~~~~~VrY----------------------------------~r~~~~~e~~vigt~ 379 (668)
T COG4946 340 R-GKAFIMRPWDGYSIQ-----VGKKGGVRY----------------------------------RRIQVDPEGDVIGTN 379 (668)
T ss_pred c-CcEEEECCCCCeeEE-----cCCCCceEE----------------------------------EEEccCCcceEEecc
Confidence 4 778887766553221 223333322 234446668899999
Q ss_pred CC-eEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCC
Q 037288 396 DG-TVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQ 474 (513)
Q Consensus 396 dg-~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~ 474 (513)
|| .+-++|.+ ...++.+...-+.+.. +..+++|++++.+.....+.+.|+.+|.....-+...+.|+.+.|+|+
T Consensus 380 dgD~l~iyd~~---~~e~kr~e~~lg~I~a--v~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~n 454 (668)
T COG4946 380 DGDKLGIYDKD---GGEVKRIEKDLGNIEA--VKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPN 454 (668)
T ss_pred CCceEEEEecC---CceEEEeeCCccceEE--EEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCC
Confidence 98 89999985 5567778777777766 888999999999999999999999999977666666788999999999
Q ss_pred CceEEeeC
Q 037288 475 RSMGPQIE 482 (513)
Q Consensus 475 ~~~~~t~~ 482 (513)
..++|-+-
T Consensus 455 sr~iAYaf 462 (668)
T COG4946 455 SRWIAYAF 462 (668)
T ss_pred ceeEEEec
Confidence 87776553
No 283
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.29 E-value=3e-06 Score=53.98 Aligned_cols=36 Identities=25% Similarity=0.258 Sum_probs=31.8
Q ss_pred EEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEE
Q 037288 289 ASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVD 324 (513)
Q Consensus 289 ~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd 324 (513)
++..+. |.+.|.+++|+|++++|++|+.|+.|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 444454 778899999999999999999999999997
No 284
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.26 E-value=0.00041 Score=69.49 Aligned_cols=168 Identities=17% Similarity=0.170 Sum_probs=98.9
Q ss_pred EEEEE-eCCeEEEEECCCCcEEEEeeeCCC-----e---EEEEEec--CCcEEEEEeCCCeEEEEECCCCcccccccccc
Q 037288 270 QAVIG-TNLGAAMVDMETGMASWVCRSKSD-----I---LAQQVIH--SGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGR 338 (513)
Q Consensus 270 ~l~s~-s~~~i~vwd~~~~~~~~~~~~~~~-----V---~~l~~~~--~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~ 338 (513)
.++.+ .++.+..+|..+|+.++....... + ..+.-+| .+..++.++.+|.+..+|..+++... ...
T Consensus 192 ~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W---~~~ 268 (377)
T TIGR03300 192 GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLW---KRD 268 (377)
T ss_pred EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEE---eec
Confidence 44444 456799999999988775432110 0 0010011 34577788899999999998876432 000
Q ss_pred ccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCC
Q 037288 339 RHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGH 418 (513)
Q Consensus 339 ~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h 418 (513)
... .. .....+..+++++.||.+..+|.. ....+-.+...
T Consensus 269 ----------------------------------~~~-~~---~p~~~~~~vyv~~~~G~l~~~d~~--tG~~~W~~~~~ 308 (377)
T TIGR03300 269 ----------------------------------ASS-YQ---GPAVDDNRLYVTDADGVVVALDRR--SGSELWKNDEL 308 (377)
T ss_pred ----------------------------------cCC-cc---CceEeCCEEEEECCCCeEEEEECC--CCcEEEccccc
Confidence 000 00 011135677778889999999985 33344333211
Q ss_pred CCc-eeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCC-eEEEEEcCCCceEEeeCCC
Q 037288 419 VNS-HTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSV-PSAVCWRTQRSMGPQIEGK 484 (513)
Q Consensus 419 ~~~-v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~-v~~v~~~p~~~~~~t~~~~ 484 (513)
... ... ..+ .+..|++++.||.|+++|..+|+.+..+..+... ....++..+..++++.++.
T Consensus 309 ~~~~~ss--p~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~~l~v~~~dG~ 372 (377)
T TIGR03300 309 KYRQLTA--PAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGDGLLVQTRDGD 372 (377)
T ss_pred cCCcccc--CEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECCEEEEEeCCce
Confidence 111 111 111 3678999999999999999999999988765543 2333444445555555444
No 285
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.24 E-value=3.4e-06 Score=82.32 Aligned_cols=199 Identities=14% Similarity=0.169 Sum_probs=129.9
Q ss_pred ccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEee---e
Q 037288 219 SETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCR---S 295 (513)
Q Consensus 219 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~---~ 295 (513)
++..+..+.+|++...... .....+..+++.|+.+|.++.|-.+.++++++ |++|.+||.--++.+.... .
T Consensus 752 SASkDKTVKLWSik~EgD~-----~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc-D~giHlWDPFigr~Laq~~dapk 825 (1034)
T KOG4190|consen 752 SASKDKTVKLWSIKPEGDE-----IGTSACQFTYQAHKKPIHDIGFLADLRSIASC-DGGIHLWDPFIGRLLAQMEDAPK 825 (1034)
T ss_pred eccCCceEEEEEeccccCc-----cccceeeeEhhhccCcccceeeeeccceeeec-cCcceeecccccchhHhhhcCcc
Confidence 3456667777777633222 11122678899999999999999988888665 7789999988777554322 2
Q ss_pred CCCeEEEEEec--CCcEEEEE-eCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEee
Q 037288 296 KSDILAQQVIH--SGNVVLCG-FRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTF 372 (513)
Q Consensus 296 ~~~V~~l~~~~--~~~~l~sg-~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~ 372 (513)
++.+..+.--+ +..++++| +...+|+++|.|..+....++.. ...
T Consensus 826 ~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVc--------------------------------na~ 873 (1034)
T KOG4190|consen 826 EGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVC--------------------------------NAP 873 (1034)
T ss_pred cCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEec--------------------------------cCC
Confidence 23333333323 45555555 77899999999988764411111 111
Q ss_pred cCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEE-EeCC
Q 037288 373 MPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRI-WSIR 451 (513)
Q Consensus 373 ~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~v-wd~~ 451 (513)
.+...+......+.|+.++++-.+|+|.+.|.| ....+..+..-.-.. +.++ .|.+..|+....|.++.+ |...
T Consensus 874 ~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR--~G~vINswrpmecdl--lqla-apsdq~L~~saldHslaVnWhal 948 (1034)
T KOG4190|consen 874 GPNALTRAIAVADKGNKLAAALSNGCIAILDAR--NGKVINSWRPMECDL--LQLA-APSDQALAQSALDHSLAVNWHAL 948 (1034)
T ss_pred CCchheeEEEeccCcchhhHHhcCCcEEEEecC--CCceeccCCcccchh--hhhc-CchhHHHHhhcccceeEeeehhc
Confidence 222233334667899999999999999999998 544566555333222 2233 467788888888999999 9877
Q ss_pred CCeEEEEec
Q 037288 452 SGELVFEDK 460 (513)
Q Consensus 452 ~~~~~~~~~ 460 (513)
+|......+
T Consensus 949 dgimh~q~k 957 (1034)
T KOG4190|consen 949 DGIMHLQDK 957 (1034)
T ss_pred CCeeeeccC
Confidence 776555543
No 286
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.24 E-value=9.3e-05 Score=82.92 Aligned_cols=173 Identities=12% Similarity=0.085 Sum_probs=104.2
Q ss_pred EEEEEEcC-CCCEEEEE-eCCeEEEEECCCCcEEEEeee---------------CCCeEEEEEecCCc-EEEEEeCCCeE
Q 037288 259 VWTADFCT-NPSQAVIG-TNLGAAMVDMETGMASWVCRS---------------KSDILAQQVIHSGN-VVLCGFRNGAI 320 (513)
Q Consensus 259 V~~~~~s~-~g~~l~s~-s~~~i~vwd~~~~~~~~~~~~---------------~~~V~~l~~~~~~~-~l~sg~~dg~i 320 (513)
-+.++++| ++.++++. .++.|++||..++........ -.....++|+|++. ++++-+.++.|
T Consensus 685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~I 764 (1057)
T PLN02919 685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSI 764 (1057)
T ss_pred CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeE
Confidence 36889999 55555554 456699999987764332110 11246799999997 55566678999
Q ss_pred EEEECCCCccccccccccccCcCeEE---EeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCC
Q 037288 321 VTVDVRKRQRGCSSRAGRRHRIPYSR---LQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDG 397 (513)
Q Consensus 321 ~iwd~~~~~~~~~~~~~~~h~~~v~~---v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg 397 (513)
++||+.++.... +. ...++.. ..| ++ ..+. .....+.++ .. ++++++|+.+++-+.++
T Consensus 765 rv~D~~tg~~~~----~~-gg~~~~~~~l~~f--------G~-~dG~-g~~~~l~~P---~G-vavd~dG~LYVADs~N~ 825 (1057)
T PLN02919 765 RALDLKTGGSRL----LA-GGDPTFSDNLFKF--------GD-HDGV-GSEVLLQHP---LG-VLCAKDGQIYVADSYNH 825 (1057)
T ss_pred EEEECCCCcEEE----EE-ecccccCcccccc--------cC-CCCc-hhhhhccCC---ce-eeEeCCCcEEEEECCCC
Confidence 999998764211 00 0000000 000 00 0000 000011112 22 36778999888888999
Q ss_pred eEEEEecCCCCccceEEecCC--------------CCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE
Q 037288 398 TVKLYDHRLTTRGAVQSYEGH--------------VNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGEL 455 (513)
Q Consensus 398 ~i~lwd~~~~~~~~~~~~~~h--------------~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~ 455 (513)
.|++||.. .+.+.++.+. -... ..++++++|+++++-+.++.|++||+.+++.
T Consensus 826 rIrviD~~---tg~v~tiaG~G~~G~~dG~~~~a~l~~P--~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 826 KIKKLDPA---TKRVTTLAGTGKAGFKDGKALKAQLSEP--AGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred EEEEEECC---CCeEEEEeccCCcCCCCCcccccccCCc--eEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 99999985 3333333221 1122 2378899999989989999999999998865
No 287
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.21 E-value=6.2e-06 Score=83.29 Aligned_cols=197 Identities=14% Similarity=0.094 Sum_probs=127.8
Q ss_pred EEeccccCcEEEEEEcCCC-CEEEEEeCCe-EEEEECCCCc-EEEEee-eCCCeEEEEEec-CCcEEEEEeCCCeEEEEE
Q 037288 250 HLVASFKCTVWTADFCTNP-SQAVIGTNLG-AAMVDMETGM-ASWVCR-SKSDILAQQVIH-SGNVVLCGFRNGAIVTVD 324 (513)
Q Consensus 250 ~~~~~h~~~V~~~~~s~~g-~~l~s~s~~~-i~vwd~~~~~-~~~~~~-~~~~V~~l~~~~-~~~~l~sg~~dg~i~iwd 324 (513)
..+.+|..+|.++.|+|.. ..+++++-++ +..||+++.. ++.... -.+.-..++|+- +++.+++ +....|++||
T Consensus 108 f~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlas-shg~~i~vwd 186 (1081)
T KOG0309|consen 108 FVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLAS-SHGNDIFVWD 186 (1081)
T ss_pred EEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhh-ccCCceEEEe
Confidence 5588999999999999955 4777886555 9999998765 333333 445677889986 4455554 5677899999
Q ss_pred CCCCccccccccccccCcCeEEEeeCC----eEEEeE-------eecccCcccceeEeecCCCceEEEEEcCC--CCEEE
Q 037288 325 VRKRQRGCSSRAGRRHRIPYSRLQRND----RVTNEQ-------WFELKANIWPSHTTFMPSSISCLQSLQLY--DQYFL 391 (513)
Q Consensus 325 ~~~~~~~~~~~~~~~h~~~v~~v~~~~----~~~s~~-------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~ 391 (513)
++.+.. + +..+++|...|..++|+. .+++.+ |+..+..-.+.+++.....+..-. +-|- |.+++
T Consensus 187 ~r~gs~-p-l~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r-~~Pfg~g~~~m 263 (1081)
T KOG0309|consen 187 LRKGST-P-LCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGR-YLPFGEGYCIM 263 (1081)
T ss_pred ccCCCc-c-eEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceecc-ccccCceeEec
Confidence 998764 2 557888999999999987 455444 777665554555554444333321 2222 22222
Q ss_pred EEecCCeEEEEecCCC--------CccceEEecCCCCceeEEEEEE--------cCC--CCEEEEEeCCCcEEEEeCCC
Q 037288 392 ASSMDGTVKLYDHRLT--------TRGAVQSYEGHVNSHTRIQLGV--------DQS--ERFVMSGGEDCKLRIWSIRS 452 (513)
Q Consensus 392 s~s~dg~i~lwd~~~~--------~~~~~~~~~~h~~~v~~~~~~~--------s~~--g~~l~sg~~Dg~v~vwd~~~ 452 (513)
-.-.+..+.+++.+.. ...++.+|.||.+.|.. +-| +-+ +-.|++=+.|.++++|-+.+
T Consensus 264 p~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~e--FlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 264 PMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLE--FLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred cccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHH--HhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 2122224444443311 12389999999987643 322 112 23689999999999998754
No 288
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.19 E-value=9e-06 Score=76.74 Aligned_cols=97 Identities=14% Similarity=0.128 Sum_probs=75.3
Q ss_pred EEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCcccccccc-ccccCcCeEEEeeCCeEEEeE
Q 037288 279 AAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRA-GRRHRIPYSRLQRNDRVTNEQ 357 (513)
Q Consensus 279 i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~-~~~h~~~v~~v~~~~~~~s~~ 357 (513)
+.+|....+.+..++.|-+.++.++|+||+++|+++.+|..|++-....... +.. +-||+.-|..++.
T Consensus 134 ~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~---IesfclGH~eFVS~isl-------- 202 (390)
T KOG3914|consen 134 FDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFV---IESFCLGHKEFVSTISL-------- 202 (390)
T ss_pred eeeecccccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccc---hhhhccccHhheeeeee--------
Confidence 7788877788888899999999999999999999999999999977654432 223 3467776666433
Q ss_pred eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEe
Q 037288 358 WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSY 415 (513)
Q Consensus 358 w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~ 415 (513)
- +++.|++|+.|+++++||++ +...+.++
T Consensus 203 --------------------------~-~~~~LlS~sGD~tlr~Wd~~--sgk~L~t~ 231 (390)
T KOG3914|consen 203 --------------------------T-DNYLLLSGSGDKTLRLWDIT--SGKLLDTC 231 (390)
T ss_pred --------------------------c-cCceeeecCCCCcEEEEecc--cCCccccc
Confidence 1 46678999999999999998 44455444
No 289
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.19 E-value=0.00044 Score=77.65 Aligned_cols=204 Identities=9% Similarity=0.011 Sum_probs=120.2
Q ss_pred cEEEEEEcCCCCEEEEE-e-CCeEEEEECCCCcEEEEeee-----------------CCCeEEEEEec-CCcEEEEEeCC
Q 037288 258 TVWTADFCTNPSQAVIG-T-NLGAAMVDMETGMASWVCRS-----------------KSDILAQQVIH-SGNVVLCGFRN 317 (513)
Q Consensus 258 ~V~~~~~s~~g~~l~s~-s-~~~i~vwd~~~~~~~~~~~~-----------------~~~V~~l~~~~-~~~~l~sg~~d 317 (513)
.-..+++.+++..|.++ . ++.|+++|+.++....+... -..-..++|+| ++.++++...+
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~ 704 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ 704 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC
Confidence 45788999888765544 3 35599999987764333210 01236789999 56677777788
Q ss_pred CeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCC-EEEEEecC
Q 037288 318 GAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQ-YFLASSMD 396 (513)
Q Consensus 318 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~s~d 396 (513)
+.|++||...+... .+.+..... . . .+.......+ ..... +++++++. ++++-+.+
T Consensus 705 ~~I~v~d~~~g~v~----~~~G~G~~~-~--~------------~g~~~~~~~~---~~P~G-IavspdG~~LYVADs~n 761 (1057)
T PLN02919 705 HQIWEYNISDGVTR----VFSGDGYER-N--L------------NGSSGTSTSF---AQPSG-ISLSPDLKELYIADSES 761 (1057)
T ss_pred CeEEEEECCCCeEE----EEecCCccc-c--C------------CCCccccccc---cCccE-EEEeCCCCEEEEEECCC
Confidence 99999998766421 111110000 0 0 0000000001 11222 46788887 44555667
Q ss_pred CeEEEEecCCCCccceE-------------EecCCCC------ceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 037288 397 GTVKLYDHRLTTRGAVQ-------------SYEGHVN------SHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVF 457 (513)
Q Consensus 397 g~i~lwd~~~~~~~~~~-------------~~~~h~~------~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~ 457 (513)
+.|++||+. ...... .+-.+.+ ......++++++|..+++-..++.|++||..++....
T Consensus 762 ~~Irv~D~~--tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~t 839 (1057)
T PLN02919 762 SSIRALDLK--TGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTT 839 (1057)
T ss_pred CeEEEEECC--CCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEE
Confidence 999999986 222110 0100000 0011347889999988888999999999998887654
Q ss_pred EecC-------------CCCCeEEEEEcCCCceEEeeCCCee
Q 037288 458 EDKF-------------SNSVPSAVCWRTQRSMGPQIEGKIH 486 (513)
Q Consensus 458 ~~~~-------------~~~~v~~v~~~p~~~~~~t~~~~~~ 486 (513)
.... .-.....+++++++.++++...+-.
T Consensus 840 iaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~ 881 (1057)
T PLN02919 840 LAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSL 881 (1057)
T ss_pred EeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCE
Confidence 3211 1124788999999888887765544
No 290
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.15 E-value=8.4e-05 Score=73.08 Aligned_cols=178 Identities=8% Similarity=0.017 Sum_probs=118.4
Q ss_pred cEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeC-----------CCeEEEEECC
Q 037288 258 TVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFR-----------NGAIVTVDVR 326 (513)
Q Consensus 258 ~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~-----------dg~i~iwd~~ 326 (513)
.=+-+.|||-|.||++-...+|.+|--.+-..+..+.| ..|.-+.|||..++|++=+. ...++|||++
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF~H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~ 290 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQGIALWGGESFDRIQRFYH-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA 290 (698)
T ss_pred eeeeEEecCCceEEEEEeccceeeecCccHHHHHhccC-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence 34568999999999999989999997666555554544 45888999999999988753 2578999999
Q ss_pred CCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCC
Q 037288 327 KRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRL 406 (513)
Q Consensus 327 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~ 406 (513)
++.... .+... +.+...-.+..||.|++++|--..| .|.||+..
T Consensus 291 tG~lkr---sF~~~-------------------------------~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtp- 334 (698)
T KOG2314|consen 291 TGLLKR---SFPVI-------------------------------KSPYLKWPIFRWSHDDKYFARMTGN-SISIYETP- 334 (698)
T ss_pred ccchhc---ceecc-------------------------------CCCccccceEEeccCCceeEEeccc-eEEEEecC-
Confidence 987643 22221 1122223345688899999977764 79999864
Q ss_pred CCccceEEecCC---CCceeEEEEEEcCCCCEEEEEeC-----CCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceE
Q 037288 407 TTRGAVQSYEGH---VNSHTRIQLGVDQSERFVMSGGE-----DCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMG 478 (513)
Q Consensus 407 ~~~~~~~~~~~h---~~~v~~~~~~~s~~g~~l~sg~~-----Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~ 478 (513)
+ ...+.+. ...|.. +.|+|.+..||-=.. -..+.+-.+.+++.+++.+.+.-.-..+-|-.++.+|
T Consensus 335 -s---f~lld~Kslki~gIr~--FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyL 408 (698)
T KOG2314|consen 335 -S---FMLLDKKSLKISGIRD--FSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYL 408 (698)
T ss_pred -c---eeeecccccCCccccC--cccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEE
Confidence 2 2222222 222333 889999888874322 2457788888888777755544333455666554443
No 291
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.13 E-value=0.00038 Score=68.65 Aligned_cols=220 Identities=12% Similarity=0.051 Sum_probs=129.0
Q ss_pred cEEEEEEcCCCCEEEEEe-----------C-CeEEEEECCCCcEEEEeee---CCCe-EEEEEecCCcEEEEEeCCCeEE
Q 037288 258 TVWTADFCTNPSQAVIGT-----------N-LGAAMVDMETGMASWVCRS---KSDI-LAQQVIHSGNVVLCGFRNGAIV 321 (513)
Q Consensus 258 ~V~~~~~s~~g~~l~s~s-----------~-~~i~vwd~~~~~~~~~~~~---~~~V-~~l~~~~~~~~l~sg~~dg~i~ 321 (513)
.|.-++|||+.+||++=+ + ..++|||+.+|...+.+.. ...+ .-+.||.|++++|.-.. ..|.
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sis 329 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSIS 329 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEE
Confidence 688899999999999754 1 3499999999987766653 2223 34579999999988766 4688
Q ss_pred EEECCCCccccccccccccCcCeEEEeeCC--eEEE----------------------------------eE--eecccC
Q 037288 322 TVDVRKRQRGCSSRAGRRHRIPYSRLQRND--RVTN----------------------------------EQ--WFELKA 363 (513)
Q Consensus 322 iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~--~~~s----------------------------------~~--w~~~~~ 363 (513)
||+.......- .-.-.-..|....|+| .+++ +. |.....
T Consensus 330 IyEtpsf~lld---~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gd 406 (698)
T KOG2314|consen 330 IYETPSFMLLD---KKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGD 406 (698)
T ss_pred EEecCceeeec---ccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCc
Confidence 88765422110 0000112233333333 0000 00 332211
Q ss_pred cc----------------------------cceeEeecCCCceEEEEEcCCCCEEEEEec---CCeEEEEecCCCCcc--
Q 037288 364 NI----------------------------WPSHTTFMPSSISCLQSLQLYDQYFLASSM---DGTVKLYDHRLTTRG-- 410 (513)
Q Consensus 364 ~~----------------------------~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~---dg~i~lwd~~~~~~~-- 410 (513)
.+ .|.....+...+... .|.|.|+.|++-+. ..++.+|-+......
T Consensus 407 yLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~F-aWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~ 485 (698)
T KOG2314|consen 407 YLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAF-AWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPS 485 (698)
T ss_pred EEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeee-eeccCCCeEEEEEccccccceeEEEeecCCCchh
Confidence 10 011111122233332 57788888876543 356888887521111
Q ss_pred ceEEecCCCCceeEEEEEEcCCCCEEEEEe---CCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288 411 AVQSYEGHVNSHTRIQLGVDQSERFVMSGG---EDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIH 486 (513)
Q Consensus 411 ~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~---~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~ 486 (513)
.+..+.. ..+-.+.|+|.|++++.+. ..|.+.++|+....+..+-.......+.+.|.|.+.+++|++.-..
T Consensus 486 lVk~~dk----~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wr 560 (698)
T KOG2314|consen 486 LVKELDK----KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWR 560 (698)
T ss_pred hhhhhcc----cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhh
Confidence 4444432 2233488999999988754 5789999999853333332222234788999999999999887765
No 292
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.12 E-value=0.00016 Score=70.59 Aligned_cols=172 Identities=10% Similarity=0.169 Sum_probs=113.0
Q ss_pred EEEEEcCCCCEEEEE------e------CCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEE--EEeCCCeEEEEEC
Q 037288 260 WTADFCTNPSQAVIG------T------NLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVL--CGFRNGAIVTVDV 325 (513)
Q Consensus 260 ~~~~~s~~g~~l~s~------s------~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~--sg~~dg~i~iwd~ 325 (513)
..+.|++.|.+++.- + +..+.|+++....+.-.....++|....|.|.++.++ +|-.+..+.++|+
T Consensus 226 ~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~l 305 (561)
T COG5354 226 VQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDL 305 (561)
T ss_pred cEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeeccc
Confidence 467888888866532 1 2347788887443332235678899999999886544 4457889999999
Q ss_pred CCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecC---CeEEEE
Q 037288 326 RKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMD---GTVKLY 402 (513)
Q Consensus 326 ~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~d---g~i~lw 402 (513)
+..-. ...+..-.....|+|.+++++.++.| |.|-+|
T Consensus 306 r~Nl~----------------------------------------~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~ 345 (561)
T COG5354 306 RGNLR----------------------------------------FYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIF 345 (561)
T ss_pred ccceE----------------------------------------EecCCcccccccccCcccEEEEecCCccccceEEe
Confidence 86521 11122222225788999999998765 679999
Q ss_pred ecCCCCcc-ceEEecCCCCceeEEEEEEcCCCCEEEEEe------CCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCC
Q 037288 403 DHRLTTRG-AVQSYEGHVNSHTRIQLGVDQSERFVMSGG------EDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQR 475 (513)
Q Consensus 403 d~~~~~~~-~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~------~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~ 475 (513)
|.. .+- ++..+.+.... . +.|+||+.++.+.. .|..|.|||+...+.. ..+.+.|.|.+
T Consensus 346 ~~~--~rf~~~~~~~~~n~s--~--~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f--------el~~~~W~p~~ 411 (561)
T COG5354 346 DPA--GRFKVAGAFNGLNTS--Y--CDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF--------ELTNITWDPSG 411 (561)
T ss_pred ccC--CceEEEEEeecCCce--E--eeccCCceEEEecCCCcccccCcceEEEEecCchhh--------hhhhccccCCc
Confidence 974 322 44466654432 2 68999999987754 3889999998655433 35667788776
Q ss_pred ceEEeeCCCe
Q 037288 476 SMGPQIEGKI 485 (513)
Q Consensus 476 ~~~~t~~~~~ 485 (513)
....+++...
T Consensus 412 ~~~ttsSs~~ 421 (561)
T COG5354 412 QYVTTSSSCP 421 (561)
T ss_pred ccceeeccCC
Confidence 5555555444
No 293
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.10 E-value=3.7e-06 Score=86.48 Aligned_cols=210 Identities=15% Similarity=0.156 Sum_probs=138.3
Q ss_pred eEEeccccCcEEEEEEcCCCCEEEEEeC-CeEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCC--eEEEEE
Q 037288 249 MHLVASFKCTVWTADFCTNPSQAVIGTN-LGAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNG--AIVTVD 324 (513)
Q Consensus 249 ~~~~~~h~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg--~i~iwd 324 (513)
...+..|+..-+|++|+.+.+.|+.|+. |.|+++++.+|....... |.++|+-+.=+.||...++.+... -..+|+
T Consensus 1094 w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWD 1173 (1516)
T ss_pred chhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhc
Confidence 4457778889999999999999999965 559999999998665554 888899999888997655554332 567898
Q ss_pred CCCCccccccccccccCcCeEEEeeCC----eEEEeE------eecccCcccceeE--eecCCCceEEEEEcCCCCEEEE
Q 037288 325 VRKRQRGCSSRAGRRHRIPYSRLQRND----RVTNEQ------WFELKANIWPSHT--TFMPSSISCLQSLQLYDQYFLA 392 (513)
Q Consensus 325 ~~~~~~~~~~~~~~~h~~~v~~v~~~~----~~~s~~------w~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~s 392 (513)
+.+.- .+ ...+. .-.++.|+. +++... ||..++....... ......-..++.|+|...+++
T Consensus 1174 ~~s~~-~~-~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl- 1246 (1516)
T KOG1832|consen 1174 ASSTG-GP-RHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL- 1246 (1516)
T ss_pred ccccc-Cc-ccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe-
Confidence 86521 11 11222 234555655 222221 6666654332111 011122234567899888776
Q ss_pred EecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEc
Q 037288 393 SSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWR 472 (513)
Q Consensus 393 ~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~ 472 (513)
.|| .+||.| ....++.|....... .=.|+|+|.-++.-++ |||+++-++++....-+ -+.|.|+
T Consensus 1247 --ndG--vLWDvR--~~~aIh~FD~ft~~~---~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ld--qc~VtFN 1310 (1516)
T KOG1832|consen 1247 --NDG--VLWDVR--IPEAIHRFDQFTDYG---GGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLD--QCAVTFN 1310 (1516)
T ss_pred --eCc--eeeeec--cHHHHhhhhhheecc---cccccCCCceEEeech-----hhhhHHHHHHhcCcccc--ceEEEec
Confidence 355 589999 555777776544222 1368999999888775 89999999888765433 4678888
Q ss_pred CCC-ceEEee
Q 037288 473 TQR-SMGPQI 481 (513)
Q Consensus 473 p~~-~~~~t~ 481 (513)
..+ .|+++-
T Consensus 1311 stG~VmYa~~ 1320 (1516)
T KOG1832|consen 1311 STGDVMYAML 1320 (1516)
T ss_pred cCccchhhhh
Confidence 874 455554
No 294
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.09 E-value=7.1e-05 Score=76.37 Aligned_cols=155 Identities=14% Similarity=0.016 Sum_probs=111.9
Q ss_pred CcEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEee-eCCCeEEEEEecCC------------cEEEEEeCCCeEEEE
Q 037288 257 CTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCR-SKSDILAQQVIHSG------------NVVLCGFRNGAIVTV 323 (513)
Q Consensus 257 ~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~------------~~l~sg~~dg~i~iw 323 (513)
..-.+++|+|.| ++|.|+...|.+.|..+-+.+..+. |++.|+.+.|.|.. -+||++...|.|.+|
T Consensus 16 sN~~A~Dw~~~G-LiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~ 94 (1062)
T KOG1912|consen 16 SNRNAADWSPSG-LIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILV 94 (1062)
T ss_pred ccccccccCccc-eEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEE
Confidence 346788898766 7888888889999999888777776 67779999998731 368888999999999
Q ss_pred ECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCC-CEEEEEecCCeEEEE
Q 037288 324 DVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYD-QYFLASSMDGTVKLY 402 (513)
Q Consensus 324 d~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~s~s~dg~i~lw 402 (513)
|......+. .+..|.+++..++| ....++. ..|++-.....+.+|
T Consensus 95 d~~~~s~~~---~l~~~~~~~qdl~W-------------------------------~~~rd~Srd~LlaIh~ss~lvLw 140 (1062)
T KOG1912|consen 95 DFVLASVIN---WLSHSNDSVQDLCW-------------------------------VPARDDSRDVLLAIHGSSTLVLW 140 (1062)
T ss_pred Eehhhhhhh---hhcCCCcchhheee-------------------------------eeccCcchheeEEecCCcEEEEE
Confidence 998876533 77888888888877 3344455 456666667899999
Q ss_pred ecCCCCccceEEecCCCCceeEEEEEEcC-CCCEEEEEeCCCcEEEEeC
Q 037288 403 DHRLTTRGAVQSYEGHVNSHTRIQLGVDQ-SERFVMSGGEDCKLRIWSI 450 (513)
Q Consensus 403 d~~~~~~~~~~~~~~h~~~v~~~~~~~s~-~g~~l~sg~~Dg~v~vwd~ 450 (513)
+.. ..+.+-.+........+ +.++| |.+++..-+..|.|.+-+.
T Consensus 141 ntd--tG~k~Wk~~ys~~iLs~--f~~DPfd~rh~~~l~s~g~vl~~~~ 185 (1062)
T KOG1912|consen 141 NTD--TGEKFWKYDYSHEILSC--FRVDPFDSRHFCVLGSKGFVLSCKD 185 (1062)
T ss_pred Ecc--CCceeeccccCCcceee--eeeCCCCcceEEEEccCceEEEEec
Confidence 886 44455555544433333 67777 4566666666777776654
No 295
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.09 E-value=0.00061 Score=63.93 Aligned_cols=192 Identities=10% Similarity=0.054 Sum_probs=105.0
Q ss_pred EEEcCCCCEEEEEeC------CeEEEEECC-CCcEEEEeee-CCCeEEEEEecCCcEEEEEe------------------
Q 037288 262 ADFCTNPSQAVIGTN------LGAAMVDME-TGMASWVCRS-KSDILAQQVIHSGNVVLCGF------------------ 315 (513)
Q Consensus 262 ~~~s~~g~~l~s~s~------~~i~vwd~~-~~~~~~~~~~-~~~V~~l~~~~~~~~l~sg~------------------ 315 (513)
-.|++||++|.+.-+ +.|-|||.. +.+.+..+.. .-.-..+.+.|||..|+++-
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~t 135 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDT 135 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhh
Confidence 478999999987632 338999998 4445554542 22356777899996666652
Q ss_pred CCCeEEEEECCCCccccccccc--cccCcCeEEEeeCC--eEEEeE-eecccCcccceeEeecCCCceEEEEEcCCCCEE
Q 037288 316 RNGAIVTVDVRKRQRGCSSRAG--RRHRIPYSRLQRND--RVTNEQ-WFELKANIWPSHTTFMPSSISCLQSLQLYDQYF 390 (513)
Q Consensus 316 ~dg~i~iwd~~~~~~~~~~~~~--~~h~~~v~~v~~~~--~~~s~~-w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 390 (513)
++..+...|..+++... -..+ .-|...|+.+++.. .++.+. |.-.... .-.++
T Consensus 136 M~psL~~ld~~sG~ll~-q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~---------------------~~PLv 193 (305)
T PF07433_consen 136 MQPSLVYLDARSGALLE-QVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGD---------------------APPLV 193 (305)
T ss_pred cCCceEEEecCCCceee-eeecCccccccceeeEEecCCCcEEEEEecCCCCCc---------------------cCCeE
Confidence 12233333334443221 1123 22444444444433 111111 1111000 11233
Q ss_pred EEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCeEEEEecCCCCCeEEE
Q 037288 391 LASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGG-EDCKLRIWSIRSGELVFEDKFSNSVPSAV 469 (513)
Q Consensus 391 ~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~-~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v 469 (513)
+.-..++.+...+.. ......+.+. + -++++++++.++++.| ..+.+.+||..+++++......+ +..+
T Consensus 194 a~~~~g~~~~~~~~p---~~~~~~l~~Y---~--gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D--~cGv 263 (305)
T PF07433_consen 194 ALHRRGGALRLLPAP---EEQWRRLNGY---I--GSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPD--ACGV 263 (305)
T ss_pred EEEcCCCcceeccCC---hHHHHhhCCc---e--EEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCc--eeee
Confidence 343444444444442 1112223322 2 3388899998775544 57889999999999998865543 7788
Q ss_pred EEcCCCceEEeeCCCee
Q 037288 470 CWRTQRSMGPQIEGKIH 486 (513)
Q Consensus 470 ~~~p~~~~~~t~~~~~~ 486 (513)
+-.+++ +++|++.+..
T Consensus 264 a~~~~~-f~~ssG~G~~ 279 (305)
T PF07433_consen 264 APTDDG-FLVSSGQGQL 279 (305)
T ss_pred eecCCc-eEEeCCCccE
Confidence 888887 6666666544
No 296
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.09 E-value=0.00013 Score=75.00 Aligned_cols=143 Identities=17% Similarity=0.106 Sum_probs=95.2
Q ss_pred CCCEEEEEeCCe-EEEEECCCCcEEEEeeeCCCeEEEEEecC-----CcEEEEEeCCCeEEEEECCCCcccccccccccc
Q 037288 267 NPSQAVIGTNLG-AAMVDMETGMASWVCRSKSDILAQQVIHS-----GNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRH 340 (513)
Q Consensus 267 ~g~~l~s~s~~~-i~vwd~~~~~~~~~~~~~~~V~~l~~~~~-----~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h 340 (513)
+|.++++|++++ |.|-.+.+.+....+..+.++.+++++|+ .+.+++|+.-| +.++.-+--.... -..+..-
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~-~v~l~~~ 159 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKD-SVVLSEG 159 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCcc-ceeeecC
Confidence 599999998777 99999999988888888899999999997 46899999988 7776543222211 1123344
Q ss_pred CcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCC
Q 037288 341 RIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVN 420 (513)
Q Consensus 341 ~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~ 420 (513)
.++|.++.| .|+++|-++.+| |++||.. ....+..+.....
T Consensus 160 eG~I~~i~W------------------------------------~g~lIAWand~G-v~vyd~~--~~~~l~~i~~p~~ 200 (846)
T KOG2066|consen 160 EGPIHSIKW------------------------------------RGNLIAWANDDG-VKVYDTP--TRQRLTNIPPPSQ 200 (846)
T ss_pred ccceEEEEe------------------------------------cCcEEEEecCCC-cEEEecc--ccceeeccCCCCC
Confidence 555555444 588888888775 8999986 3333333322111
Q ss_pred ce----eEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 037288 421 SH----TRIQLGVDQSERFVMSGGEDCKLRIWSIRS 452 (513)
Q Consensus 421 ~v----~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~ 452 (513)
.+ ....+.|.++.+. +- |+.-+|+|..++.
T Consensus 201 ~~R~e~fpphl~W~~~~~L-VI-GW~d~v~i~~I~~ 234 (846)
T KOG2066|consen 201 SVRPELFPPHLHWQDEDRL-VI-GWGDSVKICSIKK 234 (846)
T ss_pred CCCcccCCCceEecCCCeE-EE-ecCCeEEEEEEec
Confidence 11 1123667666543 33 4555799998873
No 297
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.04 E-value=8.6e-05 Score=75.05 Aligned_cols=224 Identities=11% Similarity=0.067 Sum_probs=142.5
Q ss_pred CCCccEEEEecCCCCCCCCCcccc---cCceeEEeccccCcEEEEEEcCCCCEEEEEeCCe-EEEEECCCCcE---EEEe
Q 037288 221 TTGGSIYALNLDNPLDIGPNFSII---RRSTMHLVASFKCTVWTADFCTNPSQAVIGTNLG-AAMVDMETGMA---SWVC 293 (513)
Q Consensus 221 ~~~g~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~~-i~vwd~~~~~~---~~~~ 293 (513)
..+|.+.+.-+.+.....+..++. ..+.-+++.||...|.-+.|+.+.+.|.++..++ |.+|-+-.|.- ..--
T Consensus 33 G~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNn 112 (1189)
T KOG2041|consen 33 GADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINN 112 (1189)
T ss_pred cccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhC
Confidence 456667665555443333333322 1223467999999999999999888888775444 89998877751 1112
Q ss_pred eeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeec
Q 037288 294 RSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFM 373 (513)
Q Consensus 294 ~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~ 373 (513)
+.++-|.+++|+.||..|+..-.||.|.+=.+...+.-. +.+.+.
T Consensus 113 RnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwg--KeLkg~--------------------------------- 157 (1189)
T KOG2041|consen 113 RNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWG--KELKGQ--------------------------------- 157 (1189)
T ss_pred cCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecc--hhcchh---------------------------------
Confidence 256679999999999999999999999887776554211 011110
Q ss_pred CCCceEEEEEcCCCCEEEEEecCCeEEEEecCCC-----CccceEEecC----CCCceeEEEEEE--------cCCCCEE
Q 037288 374 PSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLT-----TRGAVQSYEG----HVNSHTRIQLGV--------DQSERFV 436 (513)
Q Consensus 374 ~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~-----~~~~~~~~~~----h~~~v~~~~~~~--------s~~g~~l 436 (513)
...-+.+++|.+.++.+-.+|.+++||..-. ...+.-...| ....+.. +.| -|+-..|
T Consensus 158 ---~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~--i~w~~g~~~~v~pdrP~l 232 (1189)
T KOG2041|consen 158 ---LLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAE--IEWNTGPYQPVPPDRPRL 232 (1189)
T ss_pred ---eccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccc--eeeccCccccCCCCCCEE
Confidence 0011467788888888888999999996310 0011111111 0001111 222 3577789
Q ss_pred EEEeCCCcEEEEeCCCC-eEEEEecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288 437 MSGGEDCKLRIWSIRSG-ELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIH 486 (513)
Q Consensus 437 ~sg~~Dg~v~vwd~~~~-~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~ 486 (513)
+.+-.+|.+.|-.-.+. .++-. .. .-.+....|++++.++|-++.+..
T Consensus 233 avcy~nGr~QiMR~eND~~Pvv~-dt-gm~~vgakWnh~G~vLAvcG~~~d 281 (1189)
T KOG2041|consen 233 AVCYANGRMQIMRSENDPEPVVV-DT-GMKIVGAKWNHNGAVLAVCGNDSD 281 (1189)
T ss_pred EEEEcCceehhhhhcCCCCCeEE-ec-ccEeecceecCCCcEEEEccCccc
Confidence 99999999988755443 33322 22 245889999999999999998877
No 298
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.03 E-value=0.00059 Score=61.40 Aligned_cols=180 Identities=9% Similarity=-0.064 Sum_probs=110.4
Q ss_pred CEEEEE-eCCeEEEEECCCCcEEEE-ee-eCCCeEEEEEecC-CcEEEEEeCCCeEEEEECCCCccccccccccccCcCe
Q 037288 269 SQAVIG-TNLGAAMVDMETGMASWV-CR-SKSDILAQQVIHS-GNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPY 344 (513)
Q Consensus 269 ~~l~s~-s~~~i~vwd~~~~~~~~~-~~-~~~~V~~l~~~~~-~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v 344 (513)
.+||.| +.+...+|...+.+.... .. +...|+-+.=..+ ..-+..++.|.++++.++..+... ..-|...+
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~-----~~~h~~~~ 159 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK-----FAVHNQNL 159 (344)
T ss_pred cEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccc-----ceeecccc
Confidence 366666 556689999887653222 22 3333322211112 234566677888888877654321 11221111
Q ss_pred EEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeE
Q 037288 345 SRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTR 424 (513)
Q Consensus 345 ~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~ 424 (513)
+ +. -..+++++.++++.+....|-.|.+.......+.++...+.. ..
T Consensus 160 ~-------------------------------~n-s~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D-~g 206 (344)
T KOG4532|consen 160 T-------------------------------QN-SLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSD-HG 206 (344)
T ss_pred c-------------------------------ee-eeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCC-Cc
Confidence 1 11 147889999999999999999999862111144434332221 23
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE-----EecCCCCCeEEEEEcCC---CceEEeeCCCee
Q 037288 425 IQLGVDQSERFVMSGGEDCKLRIWSIRSGELVF-----EDKFSNSVPSAVCWRTQ---RSMGPQIEGKIH 486 (513)
Q Consensus 425 ~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~-----~~~~~~~~v~~v~~~p~---~~~~~t~~~~~~ 486 (513)
...+|+.....+|++.+||++.|||++...... +-.+|.+.++.+.|++. ..+|.+-.-.+.
T Consensus 207 F~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~ 276 (344)
T KOG4532|consen 207 FYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRV 276 (344)
T ss_pred eeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceE
Confidence 457889989999999999999999998754222 23567899999999976 345555554443
No 299
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.02 E-value=0.00052 Score=68.71 Aligned_cols=78 Identities=18% Similarity=0.300 Sum_probs=59.3
Q ss_pred eEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEE
Q 037288 369 HTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIW 448 (513)
Q Consensus 369 ~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vw 448 (513)
..+..++.+.|+ +++|++..|+.|+.||+|.+||.. .+ +..+..+.-.. ..++|+|+|.++++|+..|.+.+|
T Consensus 254 tsipL~s~v~~c-a~sp~E~kLvlGC~DgSiiLyD~~---~~-~t~~~ka~~~P--~~iaWHp~gai~~V~s~qGelQ~F 326 (545)
T PF11768_consen 254 TSIPLPSQVICC-ARSPSEDKLVLGCEDGSIILYDTT---RG-VTLLAKAEFIP--TLIAWHPDGAIFVVGSEQGELQCF 326 (545)
T ss_pred EEEecCCcceEE-ecCcccceEEEEecCCeEEEEEcC---CC-eeeeeeecccc--eEEEEcCCCcEEEEEcCCceEEEE
Confidence 345667777775 789999999999999999999985 22 22222222222 338999999999999999999999
Q ss_pred eCCCC
Q 037288 449 SIRSG 453 (513)
Q Consensus 449 d~~~~ 453 (513)
|+.-.
T Consensus 327 D~ALs 331 (545)
T PF11768_consen 327 DMALS 331 (545)
T ss_pred EeecC
Confidence 98644
No 300
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.98 E-value=3.2e-05 Score=70.64 Aligned_cols=201 Identities=14% Similarity=0.163 Sum_probs=116.1
Q ss_pred cCcEEEEEEcCCCCEEEEEeCCe-EEEEECCCCc-EEE-----------------EeeeCCCeEEEEEecCC--cEEEEE
Q 037288 256 KCTVWTADFCTNPSQAVIGTNLG-AAMVDMETGM-ASW-----------------VCRSKSDILAQQVIHSG--NVVLCG 314 (513)
Q Consensus 256 ~~~V~~~~~s~~g~~l~s~s~~~-i~vwd~~~~~-~~~-----------------~~~~~~~V~~l~~~~~~--~~l~sg 314 (513)
.+.|+++.|...|.++++|..++ |.++.-+... +.. .+.-...|..+.|..++ +.++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 36789999999999999997555 8887644322 111 11122458889988655 566777
Q ss_pred eCCCeEEEEECCCCcccc-------------------c-----cccc----------------cccCcCeEEEeeCC---
Q 037288 315 FRNGAIVTVDVRKRQRGC-------------------S-----SRAG----------------RRHRIPYSRLQRND--- 351 (513)
Q Consensus 315 ~~dg~i~iwd~~~~~~~~-------------------~-----~~~~----------------~~h~~~v~~v~~~~--- 351 (513)
+.|.+|++|.+....... + +..+ .+|..-|.++.|+.
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 799999999987551100 0 0111 23334445555554
Q ss_pred eEEEeE------eecccCcccc-eeEee------cCCCceEEEEEcCC-CCEEEEEecCCeEEEEecCCCCcc-c---eE
Q 037288 352 RVTNEQ------WFELKANIWP-SHTTF------MPSSISCLQSLQLY-DQYFLASSMDGTVKLYDHRLTTRG-A---VQ 413 (513)
Q Consensus 352 ~~~s~~------w~~~~~~~~~-~~~~~------~~~~v~~~~~~~~~-~~~l~s~s~dg~i~lwd~~~~~~~-~---~~ 413 (513)
.+++.- |......... ...++ ...-|++ ..|+|. .+.|+.++..|.|++-|+| +.. | ..
T Consensus 186 t~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItS-aeFhp~~cn~fmYSsSkG~Ikl~DlR--q~alcdn~~k 262 (460)
T COG5170 186 TLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITS-AEFHPEMCNVFMYSSSKGEIKLNDLR--QSALCDNSKK 262 (460)
T ss_pred eeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhh-cccCHhHcceEEEecCCCcEEehhhh--hhhhccCchh
Confidence 333332 5544322110 00010 0112233 345554 4677888889999999998 322 1 11
Q ss_pred Ee------------cCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-eEEEEecCC
Q 037288 414 SY------------EGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSG-ELVFEDKFS 462 (513)
Q Consensus 414 ~~------------~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~-~~~~~~~~~ 462 (513)
.+ .+-...+. ++.|+++|+++++-.. -+|+|||+... .++.++..|
T Consensus 263 lfe~~~D~v~~~ff~eivsSIS--D~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h 321 (460)
T COG5170 263 LFELTIDGVDVDFFEEIVSSIS--DFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMH 321 (460)
T ss_pred hhhhccCcccchhHHHHhhhhc--ceEEcCCCcEEEEecc-ceEEEEecccccCCceeechH
Confidence 11 11122333 3889999999988665 57999999864 466665333
No 301
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.98 E-value=0.00017 Score=75.04 Aligned_cols=175 Identities=11% Similarity=0.124 Sum_probs=117.2
Q ss_pred CCEEEEE-eCCeEEEEECCCCcEEEEeeeCC-CeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeE
Q 037288 268 PSQAVIG-TNLGAAMVDMETGMASWVCRSKS-DILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYS 345 (513)
Q Consensus 268 g~~l~s~-s~~~i~vwd~~~~~~~~~~~~~~-~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~ 345 (513)
+..+..| -.+.+..+|+.+.+......-.. .|+-+. .+++++++|...|+|.+-|.++.+.+ .++.+|.+.|.
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~i---ht~~aHs~siS 221 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETI---HTFDAHSGSIS 221 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCcee---eeeecccccee
Confidence 3344444 34557788999888777666333 455554 35789999999999999999988864 49999999999
Q ss_pred EEeeCC-eEEEeE----------------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCC
Q 037288 346 RLQRND-RVTNEQ----------------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTT 408 (513)
Q Consensus 346 ~v~~~~-~~~s~~----------------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~ 408 (513)
+++..- .+++++ ||++.-+..+ .+..+....-+...+.-...+++++..|...+.|.....
T Consensus 222 DfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~--PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~ls 299 (1118)
T KOG1275|consen 222 DFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALS--PIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLS 299 (1118)
T ss_pred eeeccCCeEEEeecccccccccccchhhhhhhhhhhccC--CcccccCchhhhhcccccceEEEEecccceeeccccccC
Confidence 998887 666766 5554433221 111111111222233335678889999999999943212
Q ss_pred ccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 037288 409 RGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWS 449 (513)
Q Consensus 409 ~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd 449 (513)
..+...+.-|...-.+..++++++|..|+.|..+|.|.+|.
T Consensus 300 NP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 300 NPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 33344444444433345689999999999999999999997
No 302
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.93 E-value=0.0071 Score=60.80 Aligned_cols=87 Identities=14% Similarity=0.169 Sum_probs=65.6
Q ss_pred EEEECCCCcE----EEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEE
Q 037288 280 AMVDMETGMA----SWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTN 355 (513)
Q Consensus 280 ~vwd~~~~~~----~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s 355 (513)
.+|++..++. +..+..++.|.|++++|+...++.|+.||.|.+||...+.... ...
T Consensus 239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~-----~ka--------------- 298 (545)
T PF11768_consen 239 CIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLL-----AKA--------------- 298 (545)
T ss_pred EEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeee-----eee---------------
Confidence 5677766542 2334478889999999999999999999999999997663211 100
Q ss_pred eEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecC
Q 037288 356 EQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHR 405 (513)
Q Consensus 356 ~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~ 405 (513)
.-+...++|+|+|..|++|+..|.+.+||+.
T Consensus 299 -------------------~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 299 -------------------EFIPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred -------------------cccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 1112235788999999999999999999985
No 303
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.92 E-value=0.012 Score=65.28 Aligned_cols=229 Identities=11% Similarity=0.023 Sum_probs=126.2
Q ss_pred ccCcEEEEEEcCCCCEEEEEeCCeEEEEECCCCc----EEEEeeeCCCeEEEEEecCC-cEEEEEeCCCeEEEEECCCCc
Q 037288 255 FKCTVWTADFCTNPSQAVIGTNLGAAMVDMETGM----ASWVCRSKSDILAQQVIHSG-NVVLCGFRNGAIVTVDVRKRQ 329 (513)
Q Consensus 255 h~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~----~~~~~~~~~~V~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~~ 329 (513)
....|..+.|++|+..||.-..+.|.+|-..... ....+.....+..+.|+|.. ..|...+.+|.+..++..-.-
T Consensus 303 ~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v 382 (928)
T PF04762_consen 303 EEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDV 382 (928)
T ss_pred CCceeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEE
Confidence 4468899999999999999888889999887664 11222233446669999965 667777777888776653211
Q ss_pred ccccccccccc-CcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCC
Q 037288 330 RGCSSRAGRRH-RIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTT 408 (513)
Q Consensus 330 ~~~~~~~~~~h-~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~ 408 (513)
.. -.....+ .+.|.-|+-+...+|.-=...-+-......+..++.+..+ +|++++..+++-..||.|.+|......
T Consensus 383 ~~--s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~v-af~~~~~~~avl~~d~~l~~~~~~~~~ 459 (928)
T PF04762_consen 383 SR--SPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDV-AFSPSNSRFAVLTSDGSLSIYEWDLKN 459 (928)
T ss_pred Ee--cCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEE-EEeCCCCeEEEEECCCCEEEEEecCCC
Confidence 00 0011111 1112222211111111000001111123455667788776 777777778999999999999854211
Q ss_pred cc------ceEEecCC--------CCceeEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCe---EEEEecCCCCCeEE
Q 037288 409 RG------AVQSYEGH--------VNSHTRIQLGVDQSERFVMSGGED---CKLRIWSIRSGE---LVFEDKFSNSVPSA 468 (513)
Q Consensus 409 ~~------~~~~~~~h--------~~~v~~~~~~~s~~g~~l~sg~~D---g~v~vwd~~~~~---~~~~~~~~~~~v~~ 468 (513)
.. ....+..+ ........++|..+..+++....+ ..+.++++...+ .+.........+..
T Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (928)
T PF04762_consen 460 MWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLI 539 (928)
T ss_pred cccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEE
Confidence 11 11111110 011122346776666665555544 678888874332 33333334556666
Q ss_pred EEEcCCC--ceEEeeCCCee
Q 037288 469 VCWRTQR--SMGPQIEGKIH 486 (513)
Q Consensus 469 v~~~p~~--~~~~t~~~~~~ 486 (513)
+...+.. .++-+.++.+.
T Consensus 540 ~~~~~~~~~~~~q~~~G~v~ 559 (928)
T PF04762_consen 540 ISSSPDSGSLYIQTNDGKVF 559 (928)
T ss_pred EeeCCCCcEEEEEECCCEEE
Confidence 6666664 45555555555
No 304
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.91 E-value=0.017 Score=56.28 Aligned_cols=226 Identities=8% Similarity=0.029 Sum_probs=115.4
Q ss_pred CCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEe---CCeEEEEECCCCcEEEEeeeCC
Q 037288 221 TTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGT---NLGAAMVDMETGMASWVCRSKS 297 (513)
Q Consensus 221 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s---~~~i~vwd~~~~~~~~~~~~~~ 297 (513)
.....+.+++..+....-+ .++.+.+.. .....-..++++|||++|.... +..|.+.|+.+++.+..+.-..
T Consensus 74 ~~~d~V~v~D~~t~~~~~~-i~~p~~p~~----~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~ 148 (352)
T TIGR02658 74 KRTDYVEVIDPQTHLPIAD-IELPEGPRF----LVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD 148 (352)
T ss_pred CCCCEEEEEECccCcEEeE-EccCCCchh----hccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC
Confidence 3456677777775544311 222111110 0122445789999999888764 4569999999998777665333
Q ss_pred CeEEEE--------EecCCcEEEEE-eCCCeEE-----EEECCC----Ccc--cc--ccccccccCcCeEEEeeCC-eEE
Q 037288 298 DILAQQ--------VIHSGNVVLCG-FRNGAIV-----TVDVRK----RQR--GC--SSRAGRRHRIPYSRLQRND-RVT 354 (513)
Q Consensus 298 ~V~~l~--------~~~~~~~l~sg-~~dg~i~-----iwd~~~----~~~--~~--~~~~~~~h~~~v~~v~~~~-~~~ 354 (513)
...-.. .+.||.++... ..+|+.. ++|... .+. .. --..+....+.|..++++. ...
T Consensus 149 ~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~ 228 (352)
T TIGR02658 149 CYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAK 228 (352)
T ss_pred CcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcce
Confidence 222222 23344332211 1222211 222100 000 00 0000011123344443322 000
Q ss_pred -EeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEe----------cCCeEEEEecCCCCccceEEecCCCCcee
Q 037288 355 -NEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASS----------MDGTVKLYDHRLTTRGAVQSYEGHVNSHT 423 (513)
Q Consensus 355 -s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s----------~dg~i~lwd~~~~~~~~~~~~~~h~~~v~ 423 (513)
...|........ ..-..+..+.- ..++++++.+.+.. ..+.|.++|.. ..+.+..+..-. ..
T Consensus 229 ~~~~~~~~~~~~~--~~~wrP~g~q~-ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~--t~kvi~~i~vG~-~~- 301 (352)
T TIGR02658 229 FLPAIEAFTEAEK--ADGWRPGGWQQ-VAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAK--TGKRLRKIELGH-EI- 301 (352)
T ss_pred ecceeeecccccc--ccccCCCccee-EEEcCCCCEEEEEecCCccccccCCCCEEEEEECC--CCeEEEEEeCCC-ce-
Confidence 001222110000 00112333333 57888888887743 22579999986 555666655322 23
Q ss_pred EEEEEEcCCCC-EEEEEe-CCCcEEEEeCCCCeEEEEe
Q 037288 424 RIQLGVDQSER-FVMSGG-EDCKLRIWSIRSGELVFED 459 (513)
Q Consensus 424 ~~~~~~s~~g~-~l~sg~-~Dg~v~vwd~~~~~~~~~~ 459 (513)
..++++|||+ +|++.. .++.|.+.|+.+++.+.++
T Consensus 302 -~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 302 -DSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred -eeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 3489999999 887666 5788999999999999987
No 305
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.90 E-value=0.00041 Score=71.45 Aligned_cols=182 Identities=9% Similarity=0.115 Sum_probs=116.8
Q ss_pred CcEEEEEEcCCCCEEEEEeCCe-EEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccc
Q 037288 257 CTVWTADFCTNPSQAVIGTNLG-AAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSR 335 (513)
Q Consensus 257 ~~V~~~~~s~~g~~l~s~s~~~-i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~ 335 (513)
+.+.|+++ .+++++.|+..+ |.+.+..... ...+.|... ..+|.++++|+.||+|.|..+.+.+...
T Consensus 40 D~is~~av--~~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~--- 107 (846)
T KOG2066|consen 40 DAISCCAV--HDKFFALGTHRGAVYLTTCQGNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT--- 107 (846)
T ss_pred hHHHHHHh--hcceeeeccccceEEEEecCCcc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccce---
Confidence 46667766 467888887665 8888876433 222333322 5689999999999999999888776432
Q ss_pred cccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEe
Q 037288 336 AGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSY 415 (513)
Q Consensus 336 ~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~ 415 (513)
-.....++.+|+++| -......+.+++|+.-| +.++.-+.........+
T Consensus 108 -~~df~rpiksial~P-----------------------------d~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l 156 (846)
T KOG2066|consen 108 -QYDFKRPIKSIALHP-----------------------------DFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVL 156 (846)
T ss_pred -eEecCCcceeEEecc-----------------------------chhhhhhhheeecCcce-EEEehhhhhcCccceee
Confidence 122234555555544 00112367889999988 77776542222211134
Q ss_pred cCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCC------CeEEEEEcCCCceEEeeCCCee
Q 037288 416 EGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNS------VPSAVCWRTQRSMGPQIEGKIH 486 (513)
Q Consensus 416 ~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~------~v~~v~~~p~~~~~~t~~~~~~ 486 (513)
..-.++|.+ +.|. |+++|-++.+| |+|||+.+++.+..+..... -...+.|.++..+++.=+..+.
T Consensus 157 ~~~eG~I~~--i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d~v~ 228 (846)
T KOG2066|consen 157 SEGEGPIHS--IKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGDSVK 228 (846)
T ss_pred ecCccceEE--EEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCCeEE
Confidence 444555544 6665 89999998777 99999999998877643322 2456788887777766655555
No 306
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.81 E-value=0.0012 Score=64.52 Aligned_cols=216 Identities=12% Similarity=-0.015 Sum_probs=130.5
Q ss_pred ccCcEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCe---------------
Q 037288 255 FKCTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGA--------------- 319 (513)
Q Consensus 255 h~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~--------------- 319 (513)
-.-++..+.+||.|.+|++..-.+|.+|+-.....+..+. ...|..+.|+|.+++|.+-+..+.
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~~~~-~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~ 109 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAKLVRFR-HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNN 109 (561)
T ss_pred cCcchhheeecCcchheehhhccceEEccccchhheeeee-cCCceecccCcccceeeeeccCCccChhhccCCccccCc
Confidence 3458899999999999999888889999987776444343 456999999999999998865544
Q ss_pred EEEEECCCCccccccccccccCcC--eE-EEeeCC------eEEEeE---eecccCccc--ceeEeecCCCceEEEEEcC
Q 037288 320 IVTVDVRKRQRGCSSRAGRRHRIP--YS-RLQRND------RVTNEQ---WFELKANIW--PSHTTFMPSSISCLQSLQL 385 (513)
Q Consensus 320 i~iwd~~~~~~~~~~~~~~~h~~~--v~-~v~~~~------~~~s~~---w~~~~~~~~--~~~~~~~~~~v~~~~~~~~ 385 (513)
+.+||+.++.... .+.....+ .+ -+.|+- +++..+ +++ ++.+. +.+.++ ...+... .++|
T Consensus 110 ~~vwd~~sg~iv~---sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~-t~n~~~~p~~~lr-~~gi~dF-sisP 183 (561)
T COG5354 110 VFVWDIASGMIVF---SFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEI-TDNIEEHPFKNLR-PVGILDF-SISP 183 (561)
T ss_pred eeEEeccCceeEe---eccccCCcccccceeeeeecchhhhhhccCeEEEEec-CCccccCchhhcc-ccceeeE-EecC
Confidence 9999999987644 44444333 22 223322 333333 222 22211 111111 1223332 3444
Q ss_pred CCC--EEEE-----EecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEe-----------CCCcEEE
Q 037288 386 YDQ--YFLA-----SSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGG-----------EDCKLRI 447 (513)
Q Consensus 386 ~~~--~l~s-----~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~-----------~Dg~v~v 447 (513)
.++ .|++ .+.++.+++|.+.....-..++|.. +..+.+.|.+.|++|++-- ....++|
T Consensus 184 ~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk----~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl 259 (561)
T COG5354 184 EGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFK----VSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYL 259 (561)
T ss_pred CCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEe----ecccEEEEecCCceEEEEEEEeeecccceeccceEEE
Confidence 422 2332 3567889999886211112223321 2234578888888775421 1346888
Q ss_pred EeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeC
Q 037288 448 WSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIE 482 (513)
Q Consensus 448 wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~ 482 (513)
+++..... .......++|..++|.|...-|+...
T Consensus 260 ~~~~e~~i-~V~~~~~~pVhdf~W~p~S~~F~vi~ 293 (561)
T COG5354 260 LRITERSI-PVEKDLKDPVHDFTWEPLSSRFAVIS 293 (561)
T ss_pred Eeeccccc-ceeccccccceeeeecccCCceeEEe
Confidence 88874433 33335578999999999966555555
No 307
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.77 E-value=0.0013 Score=68.11 Aligned_cols=72 Identities=11% Similarity=0.006 Sum_probs=58.8
Q ss_pred cEEEEEEcCCCCEEEEEeCC-eEEEEECCCCcEEEEe-eeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCc
Q 037288 258 TVWTADFCTNPSQAVIGTNL-GAAMVDMETGMASWVC-RSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQ 329 (513)
Q Consensus 258 ~V~~~~~s~~g~~l~s~s~~-~i~vwd~~~~~~~~~~-~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~ 329 (513)
.+.+++|+|..-.|+.|-+- .+.+|...+.+.-... .|+.+|..+.|+++|+.++++..-|.|.+|......
T Consensus 61 hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g 134 (1416)
T KOG3617|consen 61 HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIG 134 (1416)
T ss_pred ehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeecc
Confidence 45679999999899999554 4899998776644433 388999999999999999999999999999876443
No 308
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.77 E-value=0.0041 Score=57.66 Aligned_cols=145 Identities=17% Similarity=0.188 Sum_probs=90.8
Q ss_pred CCeEEEEECCCCcEEEEeeeCCCeEEEE--EecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeE
Q 037288 276 NLGAAMVDMETGMASWVCRSKSDILAQQ--VIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRV 353 (513)
Q Consensus 276 ~~~i~vwd~~~~~~~~~~~~~~~V~~l~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~ 353 (513)
++.|..||..+|+.++............ ..+++..+++++.++.+..||..+++... -..+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W-~~~~---------------- 64 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLW-RFDL---------------- 64 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEE-EEEC----------------
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEE-Eeec----------------
Confidence 4568999999999999887532222111 33456677777899999999999887533 0011
Q ss_pred EEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEE-ecCCC---CceeEEEEEE
Q 037288 354 TNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQS-YEGHV---NSHTRIQLGV 429 (513)
Q Consensus 354 ~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~-~~~h~---~~v~~~~~~~ 429 (513)
+..+..... ..+..+++++.++.|..+|.. +...+.. ..... .........+
T Consensus 65 --------------------~~~~~~~~~--~~~~~v~v~~~~~~l~~~d~~--tG~~~W~~~~~~~~~~~~~~~~~~~~ 120 (238)
T PF13360_consen 65 --------------------PGPISGAPV--VDGGRVYVGTSDGSLYALDAK--TGKVLWSIYLTSSPPAGVRSSSSPAV 120 (238)
T ss_dssp --------------------SSCGGSGEE--EETTEEEEEETTSEEEEEETT--TSCEEEEEEE-SSCTCSTB--SEEEE
T ss_pred --------------------cccccceee--ecccccccccceeeeEecccC--CcceeeeeccccccccccccccCceE
Confidence 010000011 135566667788899999976 4445544 22221 1111212232
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCC
Q 037288 430 DQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSN 463 (513)
Q Consensus 430 s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~ 463 (513)
++..++.+..++.|..+|+++|+.+.......
T Consensus 121 --~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~ 152 (238)
T PF13360_consen 121 --DGDRLYVGTSSGKLVALDPKTGKLLWKYPVGE 152 (238)
T ss_dssp --ETTEEEEEETCSEEEEEETTTTEEEEEEESST
T ss_pred --ecCEEEEEeccCcEEEEecCCCcEEEEeecCC
Confidence 38888999989999999999999988876543
No 309
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.73 E-value=0.015 Score=53.24 Aligned_cols=195 Identities=12% Similarity=0.069 Sum_probs=110.4
Q ss_pred EEEEcCCCCEEEEEeCCeEEEEECCCC--cEEEEee---eC-CCeEEEEEecCCcEEEEEeCCCeEEEEECCCCcccccc
Q 037288 261 TADFCTNPSQAVIGTNLGAAMVDMETG--MASWVCR---SK-SDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSS 334 (513)
Q Consensus 261 ~~~~s~~g~~l~s~s~~~i~vwd~~~~--~~~~~~~---~~-~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~ 334 (513)
.++.+.+|++||.-.|..|-|-..... ..+.... .+ ..=.-++|+||+.+||.+...|+|++||+-...... +
T Consensus 2 ~~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~-I 80 (282)
T PF15492_consen 2 HLALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFV-I 80 (282)
T ss_pred ceeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEE-c
Confidence 466778999999998888776654433 1222222 11 225789999999999999999999999997543211 1
Q ss_pred cc---ccc-cCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCcc
Q 037288 335 RA---GRR-HRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRG 410 (513)
Q Consensus 335 ~~---~~~-h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~ 410 (513)
.. +.+ -..+|..+.|-+ ...+ ..+ ...|++-..+|.++-|-+.....+
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~--------------------~~~s-----~~w---s~ELlvi~Y~G~L~Sy~vs~gt~q 132 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLE--------------------YKKS-----AQW---SYELLVINYRGQLRSYLVSVGTNQ 132 (282)
T ss_pred CcccccCCccccceeeeEeec--------------------cccc-----ccc---ceeEEEEeccceeeeEEEEcccCC
Confidence 00 111 122333333311 0000 000 234566667777777765211111
Q ss_pred ---ceE--EecC-CCCceeEEEEEEcCCCCEEEEEeC----C-------CcEEEEeCCCCeEEEE---------------
Q 037288 411 ---AVQ--SYEG-HVNSHTRIQLGVDQSERFVMSGGE----D-------CKLRIWSIRSGELVFE--------------- 458 (513)
Q Consensus 411 ---~~~--~~~~-h~~~v~~~~~~~s~~g~~l~sg~~----D-------g~v~vwd~~~~~~~~~--------------- 458 (513)
... .|.. +...|.. +.++|.-++|+.||. | .-+.-|.+-++.+...
T Consensus 133 ~y~e~hsfsf~~~yp~Gi~~--~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~ 210 (282)
T PF15492_consen 133 GYQENHSFSFSSHYPHGINS--AVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKR 210 (282)
T ss_pred cceeeEEEEecccCCCceeE--EEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccc
Confidence 222 3333 3556666 788888777776653 1 1356676543321111
Q ss_pred --------------ecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288 459 --------------DKFSNSVPSAVCWRTQRSMGPQIEGKIH 486 (513)
Q Consensus 459 --------------~~~~~~~v~~v~~~p~~~~~~t~~~~~~ 486 (513)
.......|..+..+|++..+|+....-.
T Consensus 211 ~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~ 252 (282)
T PF15492_consen 211 RGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGS 252 (282)
T ss_pred cceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCe
Confidence 0112456888999999888887765544
No 310
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.70 E-value=0.0061 Score=63.58 Aligned_cols=198 Identities=11% Similarity=0.059 Sum_probs=110.1
Q ss_pred EEcCCCCEEEEEe-CCeEEEEECCCCcEEEEeeeCCC-eEEEEEecCCcEEEEEeCCC-----eEEEEECCCCccccccc
Q 037288 263 DFCTNPSQAVIGT-NLGAAMVDMETGMASWVCRSKSD-ILAQQVIHSGNVVLCGFRNG-----AIVTVDVRKRQRGCSSR 335 (513)
Q Consensus 263 ~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~~~~~~~-V~~l~~~~~~~~l~sg~~dg-----~i~iwd~~~~~~~~~~~ 335 (513)
.|++++..++.|+ ++.|.+.+-.-........+... |..+....+.++|++-+.|+ .++|||+...+....-.
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~ 109 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQ 109 (933)
T ss_pred EEcCCCceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcc
Confidence 3456777888885 45576555331111122224444 55554444446777777664 58999997653211000
Q ss_pred cccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCC-CccceEE
Q 037288 336 AGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLT-TRGAVQS 414 (513)
Q Consensus 336 ~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~-~~~~~~~ 414 (513)
.+..|+ +. .........+.+..+++.+-+.+|+|-.||.|..+.-+.. +.+.-..
T Consensus 110 c~~~~r--i~----------------------~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~ 165 (933)
T KOG2114|consen 110 CLYEHR--IF----------------------TIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQD 165 (933)
T ss_pred eeeeee--ee----------------------ccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcccccee
Confidence 000000 00 0011112344555678888899999999999999853211 2222222
Q ss_pred ec-CCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE-EEEecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288 415 YE-GHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGEL-VFEDKFSNSVPSAVCWRTQRSMGPQIEGKIH 486 (513)
Q Consensus 415 ~~-~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~-~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~ 486 (513)
+. ....+|+. +++-.+++.++-...-..|.+|.+....+ +..+..++.++++..+++...-|+.+++..-
T Consensus 166 ~~~~~~~pITg--L~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l 237 (933)
T KOG2114|consen 166 YSHRGKEPITG--LALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFL 237 (933)
T ss_pred eeccCCCCcee--eEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceE
Confidence 22 23456777 66666776633333345699999985542 4447788888999999988543444444433
No 311
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.70 E-value=0.019 Score=57.42 Aligned_cols=178 Identities=13% Similarity=0.133 Sum_probs=97.5
Q ss_pred CCEEEE-EeCCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCcccccccccc------cc
Q 037288 268 PSQAVI-GTNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGR------RH 340 (513)
Q Consensus 268 g~~l~s-~s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~------~h 340 (513)
+..+.. +.++.+..+|..+|+.++.......+.+.-.. .+..++.++.+|.+..||.++++.......-. ..
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~ 183 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGS 183 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCC
Confidence 444444 45677999999999998877655544332222 34567777889999999998886533111000 00
Q ss_pred CcCeEEEeeCCeEEEeE-------eecccCcccceeEeecCC---------CceEEEEEcCCCCEEEEEecCCeEEEEec
Q 037288 341 RIPYSRLQRNDRVTNEQ-------WFELKANIWPSHTTFMPS---------SISCLQSLQLYDQYFLASSMDGTVKLYDH 404 (513)
Q Consensus 341 ~~~v~~v~~~~~~~s~~-------w~~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~~l~s~s~dg~i~lwd~ 404 (513)
..++. ....++.+. ++...++..-......+. .+.+...+ .+..+++++.+|.+..||.
T Consensus 184 ~sp~~---~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~ 258 (377)
T TIGR03300 184 ASPVI---ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDL 258 (377)
T ss_pred CCCEE---ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEEC
Confidence 11111 011222221 444444322111111100 00010111 2457777888999999998
Q ss_pred CCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEe
Q 037288 405 RLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFED 459 (513)
Q Consensus 405 ~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~ 459 (513)
. ....+-... .... .. .. .++..|+.++.||.|+.+|..+|+.+...
T Consensus 259 ~--tG~~~W~~~-~~~~-~~--p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 259 R--SGRVLWKRD-ASSY-QG--PA--VDDNRLYVTDADGVVVALDRRSGSELWKN 305 (377)
T ss_pred C--CCcEEEeec-cCCc-cC--ce--EeCCEEEEECCCCeEEEEECCCCcEEEcc
Confidence 6 333333332 1111 11 11 24678888899999999999999887665
No 312
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.68 E-value=0.0091 Score=55.31 Aligned_cols=175 Identities=13% Similarity=0.093 Sum_probs=99.8
Q ss_pred CCCEEEEEeCCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEE
Q 037288 267 NPSQAVIGTNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSR 346 (513)
Q Consensus 267 ~g~~l~s~s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~ 346 (513)
++.+++...++.+..||..+|+.++.......+.... ..++..+++++.|+.+..+|..+++..... ......
T Consensus 36 ~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~--~~~~~~---- 108 (238)
T PF13360_consen 36 GGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSI--YLTSSP---- 108 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEE--EE-SSC----
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-eecccccccccceeeeEecccCCcceeeee--cccccc----
Confidence 4444545467779999999999998887655433222 234556677778889999999888754300 000000
Q ss_pred EeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCcee---
Q 037288 347 LQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHT--- 423 (513)
Q Consensus 347 v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~--- 423 (513)
.............+..++++..++.|..+|+. +...+..+........
T Consensus 109 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~--tG~~~w~~~~~~~~~~~~~ 159 (238)
T PF13360_consen 109 ---------------------------PAGVRSSSSPAVDGDRLYVGTSSGKLVALDPK--TGKLLWKYPVGEPRGSSPI 159 (238)
T ss_dssp ---------------------------TCSTB--SEEEEETTEEEEEETCSEEEEEETT--TTEEEEEEESSTT-SS--E
T ss_pred ---------------------------ccccccccCceEecCEEEEEeccCcEEEEecC--CCcEEEEeecCCCCCCcce
Confidence 00000000111237788888889999999986 4445555544332210
Q ss_pred ------EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEee
Q 037288 424 ------RIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQI 481 (513)
Q Consensus 424 ------~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~ 481 (513)
...+.+ .++ .++.++.++.+.-+|+.+++.+.... ...+..+....++.+++++
T Consensus 160 ~~~~~~~~~~~~-~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~~~~~~~~~l~~~~ 219 (238)
T PF13360_consen 160 SSFSDINGSPVI-SDG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYSLPSVDGGTLYVTS 219 (238)
T ss_dssp EEETTEEEEEEC-CTT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECECEECCCTEEEEEE
T ss_pred eeecccccceEE-ECC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccCCceeeCCEEEEEe
Confidence 011222 234 77777878864444999999775433 2223332334445666555
No 313
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.68 E-value=0.049 Score=54.89 Aligned_cols=213 Identities=12% Similarity=0.062 Sum_probs=113.5
Q ss_pred EEEcCCCCEEEEEeCC------------eEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCC
Q 037288 262 ADFCTNPSQAVIGTNL------------GAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKR 328 (513)
Q Consensus 262 ~~~s~~g~~l~s~s~~------------~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~ 328 (513)
++.+|.|-.+|...+. .|.||+.. |+.+..+. ..+.+.++.|+.+..++ +-..||.+++||+...
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e~Lv-vV~~dG~v~vy~~~G~ 111 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDEELV-VVQSDGTVRVYDLFGE 111 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECCCCeEE-EEEcCCEEEEEeCCCc
Confidence 4445555555555443 48888876 55555444 23679999998765555 5558999999999643
Q ss_pred ccccc----cccccccCcCeEEEeeC-C--eEEEeE---eecccCc------c---cceeEe--ecCCCceEEEEEcCCC
Q 037288 329 QRGCS----SRAGRRHRIPYSRLQRN-D--RVTNEQ---WFELKAN------I---WPSHTT--FMPSSISCLQSLQLYD 387 (513)
Q Consensus 329 ~~~~~----~~~~~~h~~~v~~v~~~-~--~~~s~~---w~~~~~~------~---~~~~~~--~~~~~v~~~~~~~~~~ 387 (513)
. ... +....-....+.++.+. . .++++. +...... . .+.... ........+..++.+.
T Consensus 112 ~-~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~ 190 (410)
T PF04841_consen 112 F-QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDR 190 (410)
T ss_pred e-eechhhhccccCcccccccccccCCCCEEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCc
Confidence 3 110 11111111222222222 1 222222 1111100 0 000000 0011111112344455
Q ss_pred CEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCC-CCCe
Q 037288 388 QYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFS-NSVP 466 (513)
Q Consensus 388 ~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~-~~~v 466 (513)
...+....++.+.+.+-. . ...+. ..+++ ..+++||+|++||.-..+|.+.+.+..-.+.+.++... ....
T Consensus 191 ~~~i~~~~g~~i~~i~~~--~---~~~i~-~~~~i--~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p 262 (410)
T PF04841_consen 191 VVEILLANGETIYIIDEN--S---FKQID-SDGPI--IKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPP 262 (410)
T ss_pred ceEEEEecCCEEEEEEcc--c---ccccc-CCCCe--EEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCC
Confidence 555555556666644432 1 11122 12344 44899999999999999999999988777777776544 4567
Q ss_pred EEEEEcCCCceEEeeCCCe
Q 037288 467 SAVCWRTQRSMGPQIEGKI 485 (513)
Q Consensus 467 ~~v~~~p~~~~~~t~~~~~ 485 (513)
..++|.-+..+++.-...+
T Consensus 263 ~~~~WCG~dav~l~~~~~l 281 (410)
T PF04841_consen 263 KQMAWCGNDAVVLSWEDEL 281 (410)
T ss_pred cEEEEECCCcEEEEeCCEE
Confidence 8888988766655554333
No 314
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.00066 Score=64.47 Aligned_cols=165 Identities=11% Similarity=-0.019 Sum_probs=99.6
Q ss_pred EEEEECCCCcEEEEee-eCCCeEEEEEecCCc-EEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEe
Q 037288 279 AAMVDMETGMASWVCR-SKSDILAQQVIHSGN-VVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNE 356 (513)
Q Consensus 279 i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~ 356 (513)
+++.+..+.+....+. +...|..++|+|..+ ++..++.+.+|+|.|+++.... ..+..| .++++++|.
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~v---ssy~a~-~~~wSC~wD------ 244 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVV---SSYIAY-NQIWSCCWD------ 244 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceee---eheecc-CCceeeeec------
Confidence 5555554444433333 455699999999876 8899999999999999987642 345555 555554442
Q ss_pred EeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCC--CCceeEEE----EEEc
Q 037288 357 QWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGH--VNSHTRIQ----LGVD 430 (513)
Q Consensus 357 ~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h--~~~v~~~~----~~~s 430 (513)
-.+.+++..|...|.|.+||+|.++ +++..+.+. .++|..+. -...
T Consensus 245 ---------------------------lde~h~IYaGl~nG~VlvyD~R~~~-~~~~e~~a~~t~~pv~~i~~~~~n~~f 296 (463)
T KOG1645|consen 245 ---------------------------LDERHVIYAGLQNGMVLVYDMRQPE-GPLMELVANVTINPVHKIAPVQPNKIF 296 (463)
T ss_pred ---------------------------cCCcceeEEeccCceEEEEEccCCC-chHhhhhhhhccCcceeecccCccccc
Confidence 1246677888889999999999432 244444331 12221100 0123
Q ss_pred CCCCEEEEEeCCCcEEEEeCCC--CeEEEEec-CCCCCeEEEEEcCC-CceEEeeCC
Q 037288 431 QSERFVMSGGEDCKLRIWSIRS--GELVFEDK-FSNSVPSAVCWRTQ-RSMGPQIEG 483 (513)
Q Consensus 431 ~~g~~l~sg~~Dg~v~vwd~~~--~~~~~~~~-~~~~~v~~v~~~p~-~~~~~t~~~ 483 (513)
+.|.+|+....+ +..|++.. +....++. ...++..++++++. ..+++|-..
T Consensus 297 ~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh~l~tyRs 351 (463)
T KOG1645|consen 297 TSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNHLLLTYRS 351 (463)
T ss_pred cccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCccceEEEEecC
Confidence 446677777766 56676543 23333222 22456777788775 556666554
No 315
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.64 E-value=0.03 Score=56.43 Aligned_cols=148 Identities=20% Similarity=0.184 Sum_probs=86.0
Q ss_pred CCEEEEEeCCeEEEEECCCCcEEEEeeeCCC--------eEEEEEec--CCcEEEEEeCCCeEEEEECCCCccccccccc
Q 037288 268 PSQAVIGTNLGAAMVDMETGMASWVCRSKSD--------ILAQQVIH--SGNVVLCGFRNGAIVTVDVRKRQRGCSSRAG 337 (513)
Q Consensus 268 g~~l~s~s~~~i~vwd~~~~~~~~~~~~~~~--------V~~l~~~~--~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~ 337 (513)
+..++...++.+..+|..+|+.++......+ ...+.-+| .+..++.++.+|.+..+|..+++...
T Consensus 206 ~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W----- 280 (394)
T PRK11138 206 GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVW----- 280 (394)
T ss_pred CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEE-----
Confidence 4444455667788889999987776542111 01111122 24567777789999999998886432
Q ss_pred cccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecC
Q 037288 338 RRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEG 417 (513)
Q Consensus 338 ~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~ 417 (513)
....+ . .... . ..+..+..++.+|.+..+|.. ....+-....
T Consensus 281 ---------------------~~~~~-----------~-~~~~-~--~~~~~vy~~~~~g~l~ald~~--tG~~~W~~~~ 322 (394)
T PRK11138 281 ---------------------KREYG-----------S-VNDF-A--VDGGRIYLVDQNDRVYALDTR--GGVELWSQSD 322 (394)
T ss_pred ---------------------eecCC-----------C-ccCc-E--EECCEEEEEcCCCeEEEEECC--CCcEEEcccc
Confidence 00000 0 0000 1 135667777888999999985 2222222211
Q ss_pred CCCc-eeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCC
Q 037288 418 HVNS-HTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFS 462 (513)
Q Consensus 418 h~~~-v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~ 462 (513)
-... ... ..+ .+..|+.++.||.|++.|..+|+.+...+..
T Consensus 323 ~~~~~~~s--p~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~ 364 (394)
T PRK11138 323 LLHRLLTA--PVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVD 364 (394)
T ss_pred cCCCcccC--CEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcC
Confidence 1111 111 111 2567888999999999999999998876543
No 316
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.60 E-value=0.025 Score=52.31 Aligned_cols=204 Identities=9% Similarity=0.086 Sum_probs=108.3
Q ss_pred eccccCcEEEEEEcCCCCEEEEEeCC--eEEEEECCCCcEEEEee--eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCC
Q 037288 252 VASFKCTVWTADFCTNPSQAVIGTNL--GAAMVDMETGMASWVCR--SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRK 327 (513)
Q Consensus 252 ~~~h~~~V~~~~~s~~g~~l~s~s~~--~i~vwd~~~~~~~~~~~--~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~ 327 (513)
+.+-...+..++|+|+...|++..|. .|...+.. |+.+..+. ..++.-.|++..++.++++--+++.+.++++..
T Consensus 17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~ 95 (248)
T PF06977_consen 17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDD 95 (248)
T ss_dssp -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE--
T ss_pred CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEec
Confidence 55555679999999987766655543 37677764 77766665 345688999988888888777799999999855
Q ss_pred CccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCC
Q 037288 328 RQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLT 407 (513)
Q Consensus 328 ~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~ 407 (513)
......... +..+.. ............ +++++.++.|+++-...-..+|.++..
T Consensus 96 ~~~~~~~~~-------~~~~~l------------------~~~~~~N~G~EG-la~D~~~~~L~v~kE~~P~~l~~~~~~ 149 (248)
T PF06977_consen 96 DTTSLDRAD-------VQKISL------------------GFPNKGNKGFEG-LAYDPKTNRLFVAKERKPKRLYEVNGF 149 (248)
T ss_dssp --TT--EEE-------EEEEE---------------------S---SS--EE-EEEETTTTEEEEEEESSSEEEEEEEST
T ss_pred cccccchhh-------ceEEec------------------ccccCCCcceEE-EEEcCCCCEEEEEeCCCChhhEEEccc
Confidence 432110000 111100 000011223334 366777777777766666667766420
Q ss_pred Ccc-ce--EEec------CCCCceeEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCeEEEEecCCC---------CCeEE
Q 037288 408 TRG-AV--QSYE------GHVNSHTRIQLGVDQS-ERFVMSGGEDCKLRIWSIRSGELVFEDKFSN---------SVPSA 468 (513)
Q Consensus 408 ~~~-~~--~~~~------~h~~~v~~~~~~~s~~-g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~---------~~v~~ 468 (513)
... .+ .... ........ ++++|. |.+++-+..+..|..+| .+|+++..+.-.. .-.-.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~d~S~--l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEG 226 (248)
T PF06977_consen 150 PGGFDLFVSDDQDLDDDKLFVRDLSG--LSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEG 226 (248)
T ss_dssp T-SS--EEEE-HHHH-HT--SS---E--EEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEE
T ss_pred cCccceeeccccccccccceeccccc--eEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccE
Confidence 011 11 1111 12222333 677886 55667777888999999 7788777653322 24789
Q ss_pred EEEcCCCceEEeeCCCe
Q 037288 469 VCWRTQRSMGPQIEGKI 485 (513)
Q Consensus 469 v~~~p~~~~~~t~~~~~ 485 (513)
|+|.+++.+++.++-..
T Consensus 227 Ia~d~~G~LYIvsEpNl 243 (248)
T PF06977_consen 227 IAFDPDGNLYIVSEPNL 243 (248)
T ss_dssp EEE-TT--EEEEETTTE
T ss_pred EEECCCCCEEEEcCCce
Confidence 99999999999988653
No 317
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.59 E-value=0.0052 Score=61.81 Aligned_cols=192 Identities=11% Similarity=0.029 Sum_probs=115.9
Q ss_pred eccccCcEEEEEEcCCCCEEEEE---eCC--eEEEEECCCCcEEEEeeeCCCeEEEEEecCCc-EEEEEeCCCeEEEE--
Q 037288 252 VASFKCTVWTADFCTNPSQAVIG---TNL--GAAMVDMETGMASWVCRSKSDILAQQVIHSGN-VVLCGFRNGAIVTV-- 323 (513)
Q Consensus 252 ~~~h~~~V~~~~~s~~g~~l~s~---s~~--~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~-~l~sg~~dg~i~iw-- 323 (513)
+..-...+..-+|+|++..++.. ..+ .+.++|+.+++........+.-..-+|+|||+ ++++...||...||
T Consensus 188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~ 267 (425)
T COG0823 188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLM 267 (425)
T ss_pred ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEE
Confidence 34444677888999999876643 233 38899999998777777666777889999995 56677777765555
Q ss_pred ECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEec-CCeEEEE
Q 037288 324 DVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSM-DGTVKLY 402 (513)
Q Consensus 324 d~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~-dg~i~lw 402 (513)
|+....... + .....+.+--.++|+|+.++-.+. .|.-.||
T Consensus 268 dl~~~~~~~----L----------------------------------t~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~ 309 (425)
T COG0823 268 DLDGKNLPR----L----------------------------------TNGFGINTSPSWSPDGSKIVFTSDRGGRPQIY 309 (425)
T ss_pred cCCCCccee----c----------------------------------ccCCccccCccCCCCCCEEEEEeCCCCCcceE
Confidence 665554211 1 111122222478899999886654 5554554
Q ss_pred ecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCC-Cc--EEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEE
Q 037288 403 DHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGED-CK--LRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGP 479 (513)
Q Consensus 403 d~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~D-g~--v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~ 479 (513)
-... +......+.-....-.. -.++|||++|+..+.. |. |.+.|+.++.-++.+.. ......-.|.+++.++.
T Consensus 310 ~~~~-~g~~~~riT~~~~~~~~--p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~-~~~~e~ps~~~ng~~i~ 385 (425)
T COG0823 310 LYDL-EGSQVTRLTFSGGGNSN--PVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTS-TYLNESPSWAPNGRMIM 385 (425)
T ss_pred EECC-CCCceeEeeccCCCCcC--ccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccc-cccCCCCCcCCCCceEE
Confidence 4331 23333333322222212 5789999998876643 44 77777766664444332 33345667788865555
Q ss_pred eeCCCe
Q 037288 480 QIEGKI 485 (513)
Q Consensus 480 t~~~~~ 485 (513)
...+..
T Consensus 386 ~~s~~~ 391 (425)
T COG0823 386 FSSGQG 391 (425)
T ss_pred EeccCC
Confidence 554444
No 318
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.56 E-value=2.9e-05 Score=77.58 Aligned_cols=187 Identities=14% Similarity=0.208 Sum_probs=114.0
Q ss_pred eeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcC-CCCEEEEEeC-----CeEEEEECCCCc
Q 037288 215 TSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCT-NPSQAVIGTN-----LGAAMVDMETGM 288 (513)
Q Consensus 215 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~-~g~~l~s~s~-----~~i~vwd~~~~~ 288 (513)
|..+.+..+|.+.+.+...+... .-....+|....++++|++ |...||+|-+ ..+.|||+.++-
T Consensus 71 cIlavG~atG~I~l~s~r~~hdS----------s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~l 140 (783)
T KOG1008|consen 71 CILAVGSATGNISLLSVRHPHDS----------SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLL 140 (783)
T ss_pred hhhhhccccCceEEeecCCcccc----------cceecccccccccccccccccHHHHHhhhhhhcccCCccceeccccc
Confidence 33444556688888776644332 1233567788999999998 6778888843 238999998872
Q ss_pred ----EEEEee--eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeeccc
Q 037288 289 ----ASWVCR--SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELK 362 (513)
Q Consensus 289 ----~~~~~~--~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~ 362 (513)
....+. ....+.+++|-.+.+++++|.....+.++|+|...... ..+ .+..+..
T Consensus 141 tvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~--~sv--nTk~vqG---------------- 200 (783)
T KOG1008|consen 141 TVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSV--SSV--NTKYVQG---------------- 200 (783)
T ss_pred CCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhh--hhh--hhhhccc----------------
Confidence 112222 23446788888888999999999999999998442111 000 0001111
Q ss_pred CcccceeEeecCCCceEEEEEcC-CCCEEEEEecCCeEEEEe-cCCCCccceEEecCCCCc--eeEEEEEEcCCC-CEEE
Q 037288 363 ANIWPSHTTFMPSSISCLQSLQL-YDQYFLASSMDGTVKLYD-HRLTTRGAVQSYEGHVNS--HTRIQLGVDQSE-RFVM 437 (513)
Q Consensus 363 ~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~s~s~dg~i~lwd-~~~~~~~~~~~~~~h~~~--v~~~~~~~s~~g-~~l~ 437 (513)
..++| .++|+++-. ||.|.+|| .+. -..++..+....+. -....++|.|.- ..++
T Consensus 201 ------------------~tVdp~~~nY~cs~~-dg~iAiwD~~rn-ienpl~~i~~~~N~~~~~l~~~aycPtrtglla 260 (783)
T KOG1008|consen 201 ------------------ITVDPFSPNYFCSNS-DGDIAIWDTYRN-IENPLQIILRNENKKPKQLFALAYCPTRTGLLA 260 (783)
T ss_pred ------------------ceecCCCCCceeccc-cCceeeccchhh-hccHHHHHhhCCCCcccceeeEEeccCCcchhh
Confidence 23344 677887666 99999999 542 12244444323332 112447887753 2444
Q ss_pred EEeC-CCcEEEEeCC
Q 037288 438 SGGE-DCKLRIWSIR 451 (513)
Q Consensus 438 sg~~-Dg~v~vwd~~ 451 (513)
+... .++|+++++.
T Consensus 261 ~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 261 VLSRDSITIRLYDIC 275 (783)
T ss_pred hhccCcceEEEeccc
Confidence 4444 5789999875
No 319
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.56 E-value=0.01 Score=64.40 Aligned_cols=212 Identities=12% Similarity=0.084 Sum_probs=122.1
Q ss_pred cCcEEEEEEcCCCCEEEEE-eCCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCcccccc
Q 037288 256 KCTVWTADFCTNPSQAVIG-TNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSS 334 (513)
Q Consensus 256 ~~~V~~~~~s~~g~~l~s~-s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~ 334 (513)
.+.|.++.|..++..++.+ ..|.|.+-|.++......-.....|.+++|+||+.+++..+.++++.+-+-. -.++. -
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~-f~~i~-E 145 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKD-FEPIA-E 145 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEecc-ccchh-c
Confidence 3689999999988877765 4556777788887765555577889999999999999999888888765431 11111 1
Q ss_pred cccccc---CcCeEEEeeCC--eEEEeEeecccCcccc------ee---EeecCCCceEEEEEcCCCCEEEEE-----ec
Q 037288 335 RAGRRH---RIPYSRLQRND--RVTNEQWFELKANIWP------SH---TTFMPSSISCLQSLQLYDQYFLAS-----SM 395 (513)
Q Consensus 335 ~~~~~h---~~~v~~v~~~~--~~~s~~w~~~~~~~~~------~~---~~~~~~~v~~~~~~~~~~~~l~s~-----s~ 395 (513)
+.+... .+....+.|.. .-+.| ..++..+ .. .+...+.-++ +.|.-||++||+. ..
T Consensus 146 ~~L~~d~~~~sk~v~VGwGrkeTqfrg----s~gr~~~~~~~~~ek~~~~~~~~~~~~~-IsWRgDg~~fAVs~~~~~~~ 220 (1265)
T KOG1920|consen 146 KPLDADDERKSKFVNVGWGRKETQFRG----SEGRQAARQKIEKEKALEQIEQDDHKTS-ISWRGDGEYFAVSFVESETG 220 (1265)
T ss_pred cccccccccccccceecccccceeeec----chhhhcccccccccccccchhhccCCce-EEEccCCcEEEEEEEeccCC
Confidence 111100 11112222211 00000 0010000 00 0011222223 4677899999984 33
Q ss_pred CCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEe---CCCcEEEEeCCCCeEEEE----ecCCCCCeEE
Q 037288 396 DGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGG---EDCKLRIWSIRSGELVFE----DKFSNSVPSA 468 (513)
Q Consensus 396 dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~---~Dg~v~vwd~~~~~~~~~----~~~~~~~v~~ 468 (513)
...|++||-. +.+........ ...-+++|-|.|.++++-. .|+.|.+|. ++|-.-.. +......+..
T Consensus 221 ~RkirV~drE----g~Lns~se~~~-~l~~~LsWkPsgs~iA~iq~~~sd~~IvffE-rNGL~hg~f~l~~p~de~~ve~ 294 (1265)
T KOG1920|consen 221 TRKIRVYDRE----GALNSTSEPVE-GLQHSLSWKPSGSLIAAIQCKTSDSDIVFFE-RNGLRHGEFVLPFPLDEKEVEE 294 (1265)
T ss_pred ceeEEEeccc----chhhcccCccc-ccccceeecCCCCeEeeeeecCCCCcEEEEe-cCCccccccccCCcccccchhe
Confidence 3789999963 32222211111 1112389999999998753 366899998 44443332 2222344899
Q ss_pred EEEcCCCceEEe
Q 037288 469 VCWRTQRSMGPQ 480 (513)
Q Consensus 469 v~~~p~~~~~~t 480 (513)
++|+.+..++|.
T Consensus 295 L~Wns~sdiLAv 306 (1265)
T KOG1920|consen 295 LAWNSNSDILAV 306 (1265)
T ss_pred eeecCCCCceee
Confidence 999999877776
No 320
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.47 E-value=0.094 Score=48.90 Aligned_cols=178 Identities=10% Similarity=0.067 Sum_probs=99.2
Q ss_pred EEEEcC-CCCEEEEEe-CCeEEEEECCCCcEEEEeeeCCCeEEEEEe-cCCcEEEEEeCCCeEEEEECCCCccccccccc
Q 037288 261 TADFCT-NPSQAVIGT-NLGAAMVDMETGMASWVCRSKSDILAQQVI-HSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAG 337 (513)
Q Consensus 261 ~~~~s~-~g~~l~s~s-~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~-~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~ 337 (513)
+..|.+ ++.++++.. .+.|..|+..++.... +.... ...+++. +++.+++ +..++ +.++|+.+++... +...
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~-~~G~~~~~~~g~l~v-~~~~~-~~~~d~~~g~~~~-~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG-PNGMAFDRPDGRLYV-ADSGG-IAVVDPDTGKVTV-LADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS-EEEEEEECTTSEEEE-EETTC-EEEEETTTTEEEE-EEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC-CceEEEEccCCEEEE-EEcCc-eEEEecCCCcEEE-Eeec
Confidence 567887 677777764 5669999998876543 33223 7777888 6655544 44544 4555988775432 1111
Q ss_pred cccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecC--------CeEEEEecCCCCc
Q 037288 338 RRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMD--------GTVKLYDHRLTTR 409 (513)
Q Consensus 338 ~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~d--------g~i~lwd~~~~~~ 409 (513)
....... ..... .++.++|++.++.... |.|..++..
T Consensus 79 ~~~~~~~------------------------------~~~ND-~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~---- 123 (246)
T PF08450_consen 79 PDGGVPF------------------------------NRPND-VAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD---- 123 (246)
T ss_dssp ETTCSCT------------------------------EEEEE-EEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT----
T ss_pred cCCCccc------------------------------CCCce-EEEcCCCCEEEEecCCCccccccccceEEECCC----
Confidence 1000000 01111 4677889877766543 456666653
Q ss_pred cceEEecCCCCceeEEEEEEcCCCCEEE-EEeCCCcEEEEeCCCC-e------EEEEecCCCCCeEEEEEcCCCceEEe
Q 037288 410 GAVQSYEGHVNSHTRIQLGVDQSERFVM-SGGEDCKLRIWSIRSG-E------LVFEDKFSNSVPSAVCWRTQRSMGPQ 480 (513)
Q Consensus 410 ~~~~~~~~h~~~v~~~~~~~s~~g~~l~-sg~~Dg~v~vwd~~~~-~------~~~~~~~~~~~v~~v~~~p~~~~~~t 480 (513)
..+..+...-..... ++|+|+++.|+ +-+..+.|..+++... . .+..+....+..-.+++..++.++++
T Consensus 124 ~~~~~~~~~~~~pNG--i~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va 200 (246)
T PF08450_consen 124 GKVTVVADGLGFPNG--IAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVA 200 (246)
T ss_dssp SEEEEEEEEESSEEE--EEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEE
T ss_pred CeEEEEecCcccccc--eEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEE
Confidence 222222212222233 88999999776 5567888999998632 2 12222222234778999988777776
No 321
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.43 E-value=0.0026 Score=65.38 Aligned_cols=147 Identities=14% Similarity=0.144 Sum_probs=104.3
Q ss_pred CCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCC
Q 037288 297 SDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSS 376 (513)
Q Consensus 297 ~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~ 376 (513)
+.-.+++|+|.| +||-|+. ..|.+.|.++-+. ++.+.-|...|+.+.|.| .. .+.
T Consensus 16 sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~---iqsie~h~s~V~~VrWap-------------~~-----~p~-- 70 (1062)
T KOG1912|consen 16 SNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQL---IQSIELHQSAVTSVRWAP-------------AP-----SPR-- 70 (1062)
T ss_pred ccccccccCccc-eEEEecC-ceEEEEehhhhhh---hhccccCccceeEEEecc-------------CC-----Cch--
Confidence 346788899877 4555543 5788999998876 558889999999999976 00 000
Q ss_pred ceEEEEEcC--CCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCC--CEEEEEeCCCcEEEEeCCC
Q 037288 377 ISCLQSLQL--YDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSE--RFVMSGGEDCKLRIWSIRS 452 (513)
Q Consensus 377 v~~~~~~~~--~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g--~~l~sg~~Dg~v~vwd~~~ 452 (513)
..++| ..-.||++...|.|.+||.. ....+..+..|..++..++..+..+. .+|++-..-.+|.+|+..+
T Consensus 71 ----~llS~~~~~lliAsaD~~GrIil~d~~--~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdt 144 (1062)
T KOG1912|consen 71 ----DLLSPSSSQLLIASADISGRIILVDFV--LASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDT 144 (1062)
T ss_pred ----hccCccccceeEEeccccCcEEEEEeh--hhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccC
Confidence 01222 23356777888999999997 44466677878888766444444333 4566666778999999999
Q ss_pred CeEEEEecCCCCCeEEEEEcCC
Q 037288 453 GELVFEDKFSNSVPSAVCWRTQ 474 (513)
Q Consensus 453 ~~~~~~~~~~~~~v~~v~~~p~ 474 (513)
|+.+-..........++.+.|-
T Consensus 145 G~k~Wk~~ys~~iLs~f~~DPf 166 (1062)
T KOG1912|consen 145 GEKFWKYDYSHEILSCFRVDPF 166 (1062)
T ss_pred CceeeccccCCcceeeeeeCCC
Confidence 9999888777777777888775
No 322
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.0026 Score=61.37 Aligned_cols=199 Identities=9% Similarity=-0.071 Sum_probs=121.5
Q ss_pred cccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEE----eeeCCCeEEEEEecCCcEEEEEeC-CCeEEEEECCC
Q 037288 254 SFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWV----CRSKSDILAQQVIHSGNVVLCGFR-NGAIVTVDVRK 327 (513)
Q Consensus 254 ~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~----~~~~~~V~~l~~~~~~~~l~sg~~-dg~i~iwd~~~ 327 (513)
-|.+.|+-+... -.+++.+++ |+.++.|--..-.-+.. ..|-..|.+++.+-+|.++.+.+. |..++++|+.+
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 366667666554 345666665 56699996543222222 236677899999999999999877 99999999876
Q ss_pred Ccccccccc---cccc-------CcCeEEEeeCC------eEEEeEeecccCcccceeE-eecCCCceEEEEEcCCCCEE
Q 037288 328 RQRGCSSRA---GRRH-------RIPYSRLQRND------RVTNEQWFELKANIWPSHT-TFMPSSISCLQSLQLYDQYF 390 (513)
Q Consensus 328 ~~~~~~~~~---~~~h-------~~~v~~v~~~~------~~~s~~w~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l 390 (513)
-.... ... +++. ..++..++.+. .+ +|...+....... -.|.++|.++ .+.+-+..+
T Consensus 86 ~Dmin-miKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~V----vD~~~d~~q~~~fkklH~sPV~~i-~y~qa~Ds~ 159 (558)
T KOG0882|consen 86 FDMIN-MIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFV----VDGFGDFCQDGYFKKLHFSPVKKI-RYNQAGDSA 159 (558)
T ss_pred cchhh-hcccccCCCceEEecCCCCeeeeEEeecccCCCcEE----ECCcCCcCccceecccccCceEEE-Eeeccccce
Confidence 65432 111 1221 11222222211 01 2222222111122 2344566665 667788889
Q ss_pred EEEecCCeEEEEecCC----CCccceEEec---------CCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE
Q 037288 391 LASSMDGTVKLYDHRL----TTRGAVQSYE---------GHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVF 457 (513)
Q Consensus 391 ~s~s~dg~i~lwd~~~----~~~~~~~~~~---------~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~ 457 (513)
++....|.|.-|...- +.......++ -..... .++.|+|+|..+.+-+.|..|+++++++|++++
T Consensus 160 vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~p--ts~Efsp~g~qistl~~DrkVR~F~~KtGklvq 237 (558)
T KOG0882|consen 160 VSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEP--TSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQ 237 (558)
T ss_pred eeccccceeEeecCCCcccCccccccccccccchhhcccccccCc--cceEEccccCcccccCcccEEEEEEeccchhhh
Confidence 9999899999998751 1111111111 011122 348899999999999999999999999999888
Q ss_pred EecC
Q 037288 458 EDKF 461 (513)
Q Consensus 458 ~~~~ 461 (513)
.+..
T Consensus 238 eiDE 241 (558)
T KOG0882|consen 238 EIDE 241 (558)
T ss_pred hhhc
Confidence 7643
No 323
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.36 E-value=0.013 Score=60.08 Aligned_cols=121 Identities=14% Similarity=0.122 Sum_probs=79.5
Q ss_pred cCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeCCe-EEEEECCCCc---EEEEee-
Q 037288 220 ETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNLG-AAMVDMETGM---ASWVCR- 294 (513)
Q Consensus 220 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~~-i~vwd~~~~~---~~~~~~- 294 (513)
+...|.+++|+-........ ...+-.+.+..+..|++..++|+|++++ |.++-+..+. ......
T Consensus 51 GsS~G~lyl~~R~~~~~~~~-----------~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~ 119 (726)
T KOG3621|consen 51 GSSAGSVYLYNRHTGEMRKL-----------KNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPC 119 (726)
T ss_pred ecccceEEEEecCchhhhcc-----------cccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccc
Confidence 34567777777664433311 1222345666777888888888887766 6666655432 111111
Q ss_pred ---eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCC-ccccccccccccCcCeEEEeeCC
Q 037288 295 ---SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKR-QRGCSSRAGRRHRIPYSRLQRND 351 (513)
Q Consensus 295 ---~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~-~~~~~~~~~~~h~~~v~~v~~~~ 351 (513)
|+..|+|++|++++..+++|...|+|..-.+... ......+.+..-...|..+++..
T Consensus 120 d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q 180 (726)
T KOG3621|consen 120 DKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ 180 (726)
T ss_pred cccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc
Confidence 5667999999999999999999999999988772 11112334455567788888766
No 324
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.36 E-value=0.00024 Score=73.64 Aligned_cols=169 Identities=14% Similarity=0.109 Sum_probs=110.7
Q ss_pred eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCC----eEEEeE--------eeccc
Q 037288 295 SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND----RVTNEQ--------WFELK 362 (513)
Q Consensus 295 ~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~----~~~s~~--------w~~~~ 362 (513)
+....+|++|+.+.+.|+.|+..|.|+++++.++.... ...+|..+|+.+.=+. .+.+.+ |+...
T Consensus 1100 ~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~---s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s 1176 (1516)
T KOG1832|consen 1100 ETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE---SVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASS 1176 (1516)
T ss_pred cccceeeEEeecCCceEEeeeccceEEEEEccCccccc---cccccccccccccccCCcceeeeeccccCchHHHhcccc
Confidence 66678999999999999999999999999999997644 8889999999887655 344444 55443
Q ss_pred CcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEe-cCCCC-ceeEEEEEEcCCCCEEEEEe
Q 037288 363 ANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSY-EGHVN-SHTRIQLGVDQSERFVMSGG 440 (513)
Q Consensus 363 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~-~~h~~-~v~~~~~~~s~~g~~l~sg~ 440 (513)
...+.+.+. -...+.|+...+.-+.|+......+||+. ...++.+| .+-.. ....-...|+|++.+++-
T Consensus 1177 -~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvq--T~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln-- 1247 (1516)
T KOG1832|consen 1177 -TGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQ--TCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN-- 1247 (1516)
T ss_pred -ccCcccccc----ccceeehhhhHHHHHhcccccceEEEecc--cCcHHHHhcCcchhhhhhccccccCCCcceEee--
Confidence 111222222 22334566555555566666688999996 34455553 22111 111122789999998864
Q ss_pred CCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEE
Q 037288 441 EDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGP 479 (513)
Q Consensus 441 ~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~ 479 (513)
||. +||++..+-++.|..-. .--.-.|+|++.-++
T Consensus 1248 -dGv--LWDvR~~~aIh~FD~ft-~~~~G~FHP~g~eVI 1282 (1516)
T KOG1832|consen 1248 -DGV--LWDVRIPEAIHRFDQFT-DYGGGGFHPSGNEVI 1282 (1516)
T ss_pred -Cce--eeeeccHHHHhhhhhhe-ecccccccCCCceEE
Confidence 553 89999988887765432 223446888865444
No 325
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.33 E-value=0.021 Score=45.00 Aligned_cols=103 Identities=17% Similarity=0.173 Sum_probs=64.5
Q ss_pred eEEEEEec---CC-cEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecC
Q 037288 299 ILAQQVIH---SG-NVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMP 374 (513)
Q Consensus 299 V~~l~~~~---~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~ 374 (513)
|+++++.. || +.|++|+.|..|++|+-..- ...+...
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~---------------------------------------~~Ei~e~ 42 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEI---------------------------------------VAEITET 42 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcE---------------------------------------EEEEecc
Confidence 56666554 44 78999999999999976532 1234445
Q ss_pred CCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCC-CEEEEEeCCCcEE
Q 037288 375 SSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSE-RFVMSGGEDCKLR 446 (513)
Q Consensus 375 ~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g-~~l~sg~~Dg~v~ 446 (513)
+.++++..+. +..|+.+..+|+|-+|+-. ..+-..+.....+......++.|| .-|++|-.+|.|-
T Consensus 43 ~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~~----~RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 43 DKVTSLCSLG--GGRFAYALANGTVGVYDRS----QRLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred cceEEEEEcC--CCEEEEEecCCEEEEEeCc----ceeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 5666665554 4779999999999999853 223333322223222122333333 3688888888764
No 326
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.31 E-value=0.026 Score=58.25 Aligned_cols=172 Identities=15% Similarity=0.090 Sum_probs=100.6
Q ss_pred EEEcCCCCEEEEEeC--CeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCC----eEEEEECCCCccccccc
Q 037288 262 ADFCTNPSQAVIGTN--LGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNG----AIVTVDVRKRQRGCSSR 335 (513)
Q Consensus 262 ~~~s~~g~~l~s~s~--~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg----~i~iwd~~~~~~~~~~~ 335 (513)
+-+.+||+.+...+. +.+.+.|.++.+..+.+.-......++++++|.++++.+.+. ++...+......
T Consensus 198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~----- 272 (635)
T PRK02888 198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDW----- 272 (635)
T ss_pred cccCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCce-----
Confidence 345568876653332 337788999888877777666677888999999888886322 222222221111
Q ss_pred cccccCcCeEEEeeCC------------eEEEeE----eeccc---CcccceeEeecCCCceEEEEEcCCCCEEEEEec-
Q 037288 336 AGRRHRIPYSRLQRND------------RVTNEQ----WFELK---ANIWPSHTTFMPSSISCLQSLQLYDQYFLASSM- 395 (513)
Q Consensus 336 ~~~~h~~~v~~v~~~~------------~~~s~~----w~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~- 395 (513)
.+.|+. .++.+. .|... ........+..+.....+ .++|||+++++++.
T Consensus 273 ----------~vvfni~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV-~vSPDGkylyVankl 341 (635)
T PRK02888 273 ----------VVVFNIARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGV-NTSPDGKYFIANGKL 341 (635)
T ss_pred ----------EEEEchHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccce-EECCCCCEEEEeCCC
Confidence 111111 001000 22222 001122333444444443 68999999887765
Q ss_pred CCeEEEEecCCCCc----------cceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 037288 396 DGTVKLYDHRLTTR----------GAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRS 452 (513)
Q Consensus 396 dg~i~lwd~~~~~~----------~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~ 452 (513)
+.+|.++|+..... ..+...+--.++ +..+|+++|+...|-..|..|..||+..
T Consensus 342 S~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP---LHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 342 SPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP---LHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCcEEEEEChhhhhhhhccCCccceEEEeeccCCCc---ceEEECCCCCEEEeEeecceeEEEehHH
Confidence 89999999973221 012233322223 3468899998888888899999999976
No 327
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.0041 Score=60.11 Aligned_cols=203 Identities=12% Similarity=0.052 Sum_probs=128.1
Q ss_pred eccccCcEEEEEEcCCCCEEEEEeC--CeEEEEECCCCcEEEEeeeCCCeEEEEEe-cCC---cEEEE-EeCCCeEEEEE
Q 037288 252 VASFKCTVWTADFCTNPSQAVIGTN--LGAAMVDMETGMASWVCRSKSDILAQQVI-HSG---NVVLC-GFRNGAIVTVD 324 (513)
Q Consensus 252 ~~~h~~~V~~~~~s~~g~~l~s~s~--~~i~vwd~~~~~~~~~~~~~~~V~~l~~~-~~~---~~l~s-g~~dg~i~iwd 324 (513)
+..|...|..++.+.++.++++.++ ..++++|++.-..+..++....--.+.|. ..| ..|++ .-.+|.+.++|
T Consensus 49 FraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD 128 (558)
T KOG0882|consen 49 FRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVD 128 (558)
T ss_pred hHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEEC
Confidence 6678888999999999999998765 45999998876544333322111122222 223 23443 44579999999
Q ss_pred CCCCccccccccccccCcCeEEEeeCC---eEEEeE-------eecccCccccee----Eeec---------CCCceEEE
Q 037288 325 VRKRQRGCSSRAGRRHRIPYSRLQRND---RVTNEQ-------WFELKANIWPSH----TTFM---------PSSISCLQ 381 (513)
Q Consensus 325 ~~~~~~~~~~~~~~~h~~~v~~v~~~~---~~~s~~-------w~~~~~~~~~~~----~~~~---------~~~v~~~~ 381 (513)
-+...... .-.-.-|..+|..+.+++ .+++.- |.....-..|.. ..++ ........
T Consensus 129 ~~~d~~q~-~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~ 207 (558)
T KOG0882|consen 129 GFGDFCQD-GYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSF 207 (558)
T ss_pred CcCCcCcc-ceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccce
Confidence 88665433 334456889999998888 333322 776631111111 0111 11233335
Q ss_pred EEcCCCCEEEEEecCCeEEEEecCCCCccceEE--------------------------------ecCCCCceeEEEEEE
Q 037288 382 SLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQS--------------------------------YEGHVNSHTRIQLGV 429 (513)
Q Consensus 382 ~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~--------------------------------~~~h~~~v~~~~~~~ 429 (513)
.++|++..+.+-+.|..|++++++.. ..++. ++.|. ......+.|
T Consensus 208 Efsp~g~qistl~~DrkVR~F~~KtG--klvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~-~~~~~~~~f 284 (558)
T KOG0882|consen 208 EFSPDGAQISTLNPDRKVRGFVFKTG--KLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHG-STVGTNAVF 284 (558)
T ss_pred EEccccCcccccCcccEEEEEEeccc--hhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhc-CcccceeEE
Confidence 88999999999999999999998632 12211 11122 222344789
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCeEEEEe
Q 037288 430 DQSERFVMSGGEDCKLRIWSIRSGELVFED 459 (513)
Q Consensus 430 s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~ 459 (513)
+..|++|+-|.-=| |+|.++.++.+++.+
T Consensus 285 des~~flly~t~~g-ikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 285 DESGNFLLYGTILG-IKVINLDTNTVVRIL 313 (558)
T ss_pred cCCCCEEEeeccee-EEEEEeecCeEEEEe
Confidence 99999999988765 899999999887764
No 328
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.25 E-value=0.12 Score=54.44 Aligned_cols=127 Identities=15% Similarity=0.165 Sum_probs=80.7
Q ss_pred cCcEEEEEEcCCCCEEEEE-eCCeEEEE--ECCCCc---EEEEeeeCCCeEEEEEecCCcE-EEEEeCCCeEEEEECCCC
Q 037288 256 KCTVWTADFCTNPSQAVIG-TNLGAAMV--DMETGM---ASWVCRSKSDILAQQVIHSGNV-VLCGFRNGAIVTVDVRKR 328 (513)
Q Consensus 256 ~~~V~~~~~s~~g~~l~s~-s~~~i~vw--d~~~~~---~~~~~~~~~~V~~l~~~~~~~~-l~sg~~dg~i~iwd~~~~ 328 (513)
..++.+++.+.+-..+|+| .+|.|..+ |+...+ .......+.+|+.+++..++.. +++++ ...|.+|.+...
T Consensus 125 ~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~T-t~~V~~y~l~gr 203 (933)
T KOG2114|consen 125 PSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVAT-TEQVMLYSLSGR 203 (933)
T ss_pred CCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEe-cceeEEEEecCC
Confidence 4578999999998899999 45556666 332221 2223336678999999998865 44443 467999998844
Q ss_pred ccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCC
Q 037288 329 QRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTT 408 (513)
Q Consensus 329 ~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~ 408 (513)
. +....+..|...+.|.. +++....|++++ +..+.+||.. .
T Consensus 204 ~--p~~~~ld~~G~~lnCss----------------------------------~~~~t~qfIca~-~e~l~fY~sd--~ 244 (933)
T KOG2114|consen 204 T--PSLKVLDNNGISLNCSS----------------------------------FSDGTYQFICAG-SEFLYFYDSD--G 244 (933)
T ss_pred C--cceeeeccCCccceeee----------------------------------cCCCCccEEEec-CceEEEEcCC--C
Confidence 3 32444556655555533 333333356555 4579999986 5
Q ss_pred ccceEEec-CCCCce
Q 037288 409 RGAVQSYE-GHVNSH 422 (513)
Q Consensus 409 ~~~~~~~~-~h~~~v 422 (513)
.++...|. ||....
T Consensus 245 ~~~cfaf~~g~kk~~ 259 (933)
T KOG2114|consen 245 RGPCFAFEVGEKKEM 259 (933)
T ss_pred cceeeeecCCCeEEE
Confidence 55777777 776543
No 329
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.22 E-value=0.0016 Score=68.17 Aligned_cols=95 Identities=13% Similarity=0.221 Sum_probs=72.8
Q ss_pred CCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeC---------CCcEEEEeCCCCeE
Q 037288 385 LYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGE---------DCKLRIWSIRSGEL 455 (513)
Q Consensus 385 ~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~---------Dg~v~vwd~~~~~~ 455 (513)
.+++++.+|...|+|-+-|.+ +...++++.+|.+.+ .+|+-.|+.|+++|. |.-|+|||++.-+.
T Consensus 185 ~Nnr~lf~G~t~G~V~LrD~~--s~~~iht~~aHs~si----SDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra 258 (1118)
T KOG1275|consen 185 YNNRNLFCGDTRGTVFLRDPN--SFETIHTFDAHSGSI----SDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA 258 (1118)
T ss_pred ecCcEEEeecccceEEeecCC--cCceeeeeeccccce----eeeeccCCeEEEeecccccccccccchhhhhhhhhhhc
Confidence 478899999999999999998 666999999999986 456677999999886 56789999999887
Q ss_pred EEEecCCCCCeEEEEEcCC--CceEEeeCCCee
Q 037288 456 VFEDKFSNSVPSAVCWRTQ--RSMGPQIEGKIH 486 (513)
Q Consensus 456 ~~~~~~~~~~v~~v~~~p~--~~~~~t~~~~~~ 486 (513)
+.-+..+.++ .-+.|+|. ..+.+++..+..
T Consensus 259 l~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~ 290 (1118)
T KOG1275|consen 259 LSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQF 290 (1118)
T ss_pred cCCcccccCc-hhhhhcccccceEEEEecccce
Confidence 7766665544 55777777 344444444433
No 330
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.18 E-value=0.00013 Score=73.10 Aligned_cols=179 Identities=15% Similarity=0.154 Sum_probs=112.1
Q ss_pred CCeEEEEEecCC--cEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCC----eEEEeE-----------ee
Q 037288 297 SDILAQQVIHSG--NVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND----RVTNEQ-----------WF 359 (513)
Q Consensus 297 ~~V~~l~~~~~~--~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~----~~~s~~-----------w~ 359 (513)
..+.|++++.+. .++++|..+|.|-+-.++...... ....++|..++++++|++ .+++|. ||
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs-~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSS-AEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCccccc-ceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 346677766433 589999999999999888776432 446778899999999998 344443 88
Q ss_pred cccCccccee--Eeec--CCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCcc-ceEEecCCCCceeEEEEEEcC-CC
Q 037288 360 ELKANIWPSH--TTFM--PSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRG-AVQSYEGHVNSHTRIQLGVDQ-SE 433 (513)
Q Consensus 360 ~~~~~~~~~~--~~~~--~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~-~~~~~~~h~~~v~~~~~~~s~-~g 433 (513)
....--.|.. .+.. .....++ ++..+.+++++|.....++++|+| ... ....+. +..+.. +.++| .+
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~-cwlrd~klvlaGm~sr~~~ifdlR--qs~~~~~svn--Tk~vqG--~tVdp~~~ 208 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSV-CWLRDTKLVLAGMTSRSVHIFDLR--QSLDSVSSVN--TKYVQG--ITVDPFSP 208 (783)
T ss_pred cccccCCCccccccccccccCcccc-ccccCcchhhcccccchhhhhhhh--hhhhhhhhhh--hhhccc--ceecCCCC
Confidence 8766222222 2211 2233344 444788888999988999999998 322 222221 112223 55677 67
Q ss_pred CEEEEEeCCCcEEEEe-CCC-CeEEEEecCCCC----CeEEEEEcCC-CceEEeeCCC
Q 037288 434 RFVMSGGEDCKLRIWS-IRS-GELVFEDKFSNS----VPSAVCWRTQ-RSMGPQIEGK 484 (513)
Q Consensus 434 ~~l~sg~~Dg~v~vwd-~~~-~~~~~~~~~~~~----~v~~v~~~p~-~~~~~t~~~~ 484 (513)
+++++-. ||.|-+|| ... ..++..+..... .+..++|+|. .-.+++..++
T Consensus 209 nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~Rd 265 (783)
T KOG1008|consen 209 NYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRD 265 (783)
T ss_pred Cceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccC
Confidence 7777655 99999999 333 233333333333 3889999998 3344444443
No 331
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.14 E-value=0.013 Score=58.04 Aligned_cols=208 Identities=16% Similarity=0.202 Sum_probs=119.2
Q ss_pred CCCEEE-EEe-CCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCc-------EEEEEeCCCeEEEEECCCCccccccccc
Q 037288 267 NPSQAV-IGT-NLGAAMVDMETGMASWVCRSKSDILAQQVIHSGN-------VVLCGFRNGAIVTVDVRKRQRGCSSRAG 337 (513)
Q Consensus 267 ~g~~l~-s~s-~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~-------~l~sg~~dg~i~iwd~~~~~~~~~~~~~ 337 (513)
+.++|. .+. .++++-.|+++|+.+........|.-+.+.|+.. --+.|-.|..|+-||.|-..... +...
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~k-l~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNK-LAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcce-eeee
Confidence 444444 333 3458888999999988888777788888888653 23566778899999998554321 1111
Q ss_pred cccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecC
Q 037288 338 RRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEG 417 (513)
Q Consensus 338 ~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~ 417 (513)
.+| .........|.. ....-++++|+.+|.|++||-- ....-..+.+
T Consensus 423 q~k-----------------------------qy~~k~nFsc~a--TT~sG~IvvgS~~GdIRLYdri--~~~AKTAlPg 469 (644)
T KOG2395|consen 423 QSK-----------------------------QYSTKNNFSCFA--TTESGYIVVGSLKGDIRLYDRI--GRRAKTALPG 469 (644)
T ss_pred ecc-----------------------------ccccccccceee--ecCCceEEEeecCCcEEeehhh--hhhhhhcccc
Confidence 111 111122223322 2345689999999999999952 2223445667
Q ss_pred CCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCC--Ce---EEEE--ecC-CCCCeEEEEEcCCCceEEeeCCCeeeee
Q 037288 418 HVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRS--GE---LVFE--DKF-SNSVPSAVCWRTQRSMGPQIEGKIHEEF 489 (513)
Q Consensus 418 h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~--~~---~~~~--~~~-~~~~v~~v~~~p~~~~~~t~~~~~~~~~ 489 (513)
...+|.. +..+.+|+||++.+ +..+.+-++.- +. .+.. +.. ......-+...| ..+|.....++...
T Consensus 470 LG~~I~h--VdvtadGKwil~Tc-~tyLlLi~t~~kdg~~~~~~Gf~k~~~~k~p~pk~LkL~P--eHlA~~~~~~k~~a 544 (644)
T KOG2395|consen 470 LGDAIKH--VDVTADGKWILATC-KTYLLLIDTLIKDGDYAGKTGFEKFMGNKIPKPKRLKLRP--EHLAGIDNEFKGTA 544 (644)
T ss_pred cCCceee--EEeeccCcEEEEec-ccEEEEEEEecccCCccccccccccccccCCCceeeecCH--HHhhhhhhhccCce
Confidence 7788877 67778899998877 55666666532 11 1111 111 112344556666 34555554444322
Q ss_pred ccCCcc---cceeeeeeccceeeeecC
Q 037288 490 DLGQRH---SWEAWIGTQEGLFRMNWS 513 (513)
Q Consensus 490 ~~~~~~---~~~~~~gs~~g~~~~~~~ 513 (513)
.|.-.. -+..-|-+-.|-|-+.|+
T Consensus 545 ~Fs~nTg~g~qE~tIVtS~G~f~V~Wn 571 (644)
T KOG2395|consen 545 KFSFNTGIGAQERTIVTSTGPFSVSWN 571 (644)
T ss_pred eEEEeccCCcceeeEEEeecceEEEEE
Confidence 222111 122334455666777674
No 332
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.13 E-value=0.25 Score=48.82 Aligned_cols=221 Identities=11% Similarity=0.000 Sum_probs=112.8
Q ss_pred cCcEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEeeeC------------------CCeEEEEEecCCcEEEEEeCC
Q 037288 256 KCTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCRSK------------------SDILAQQVIHSGNVVLCGFRN 317 (513)
Q Consensus 256 ~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~~~------------------~~V~~l~~~~~~~~l~sg~~d 317 (513)
...+....|||+|+.+|...++.|.+++..++....+.... +.-.++-|+|||+.|+....|
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d 121 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFD 121 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE
T ss_pred ccccccceeecCCCeeEEEecCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEEC
Confidence 56788999999999999999999999999888654433211 123678899999887766443
Q ss_pred -Ce-----------------------------------EEEEECCCCccccccccc---cccCcCeEEEeeCC--e-EEE
Q 037288 318 -GA-----------------------------------IVTVDVRKRQRGCSSRAG---RRHRIPYSRLQRND--R-VTN 355 (513)
Q Consensus 318 -g~-----------------------------------i~iwd~~~~~~~~~~~~~---~~h~~~v~~v~~~~--~-~~s 355 (513)
.. +.|+|+.+++... +... ..-...+..+.|.+ . ++.
T Consensus 122 ~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~-~~~~~~~~~~~~yl~~v~W~~d~~~l~~ 200 (353)
T PF00930_consen 122 EREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTE-LDPPNSLNPQDYYLTRVGWSPDGKRLWV 200 (353)
T ss_dssp -TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCE-E---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred CcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEE-eeeccccCCCccCcccceecCCCcEEEE
Confidence 22 2333443333211 1111 12233445555544 2 221
Q ss_pred eE------------eecccCcccceeEeecCC---CceEEEEE-cCCCCEEEEEecCCeEEEEecCCCCccceEEecCCC
Q 037288 356 EQ------------WFELKANIWPSHTTFMPS---SISCLQSL-QLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHV 419 (513)
Q Consensus 356 ~~------------w~~~~~~~~~~~~~~~~~---~v~~~~~~-~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~ 419 (513)
.. ++...+............ .......+ ..+..+|.....||.-+||-+.. ..+....+....
T Consensus 201 ~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~-~~~~~~~lT~G~ 279 (353)
T PF00930_consen 201 QWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDL-DGGKPRQLTSGD 279 (353)
T ss_dssp EEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEET-TSSEEEESS-SS
T ss_pred EEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcc-cccceeccccCc
Confidence 11 222222221111111111 11122233 33444555555788777766542 233455565444
Q ss_pred CceeEEEEEEcCCCCEEE-EEeCC----CcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEE
Q 037288 420 NSHTRIQLGVDQSERFVM-SGGED----CKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGP 479 (513)
Q Consensus 420 ~~v~~~~~~~s~~g~~l~-sg~~D----g~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~ 479 (513)
-.|.. .+.++++++.|+ ++..+ ..|+.-++..+..+..+......-..+.|+|++.+++
T Consensus 280 ~~V~~-i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v 343 (353)
T PF00930_consen 280 WEVTS-ILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYV 343 (353)
T ss_dssp S-EEE-EEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEE
T ss_pred eeecc-cceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEE
Confidence 44533 367888877654 55542 3566667662334455554443336999999955443
No 333
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.12 E-value=0.15 Score=50.95 Aligned_cols=180 Identities=11% Similarity=0.064 Sum_probs=92.6
Q ss_pred CCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccc------cCcCeEEEeeCC-----------eEEEeE-
Q 037288 296 KSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRR------HRIPYSRLQRND-----------RVTNEQ- 357 (513)
Q Consensus 296 ~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~------h~~~v~~v~~~~-----------~~~s~~- 357 (513)
.++|++++.+ |=-+++.|..+|.+.|.|+|.+..+. ...+.. ....++++.|.- .++.|.
T Consensus 86 ~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~-~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn 163 (395)
T PF08596_consen 86 QGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIY-NENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTN 163 (395)
T ss_dssp S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEE-EEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEET
T ss_pred CCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEe-eccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeC
Confidence 4679999986 45689999999999999999887654 222333 355788888864 455554
Q ss_pred ------eeccc-C-c-cc--cee-EeecCCCceEEEEEcCCC--------------------CEEEEEecCCeEEEEecC
Q 037288 358 ------WFELK-A-N-IW--PSH-TTFMPSSISCLQSLQLYD--------------------QYFLASSMDGTVKLYDHR 405 (513)
Q Consensus 358 ------w~~~~-~-~-~~--~~~-~~~~~~~v~~~~~~~~~~--------------------~~l~s~s~dg~i~lwd~~ 405 (513)
|.+.- . . .. ... +..+.+.+..+..++.+. +.+++...+..++++...
T Consensus 164 ~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~ 243 (395)
T PF08596_consen 164 SGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPP 243 (395)
T ss_dssp TSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT
T ss_pred CCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCC
Confidence 33321 1 1 10 111 113455666665553221 123334446789999986
Q ss_pred CCCccc-eEEecCCCCceeEEEEEE-----cCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCC----CCeEEEEEcCCC
Q 037288 406 LTTRGA-VQSYEGHVNSHTRIQLGV-----DQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSN----SVPSAVCWRTQR 475 (513)
Q Consensus 406 ~~~~~~-~~~~~~h~~~v~~~~~~~-----s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~----~~v~~v~~~p~~ 475 (513)
..+. -+.+ .....+..+.+ ...+..|++-..||.|+++++..-+.+....... ..+...++.+++
T Consensus 244 --~~k~~~K~~---~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~G 318 (395)
T PF08596_consen 244 --KSKGAHKSF---DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNG 318 (395)
T ss_dssp -----EEEEE----SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS
T ss_pred --CCcccceee---ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCC
Confidence 3333 3333 22233333344 2356778888999999999999988888765431 123345556665
Q ss_pred ceEEeeC
Q 037288 476 SMGPQIE 482 (513)
Q Consensus 476 ~~~~t~~ 482 (513)
.++.-.+
T Consensus 319 di~~~~g 325 (395)
T PF08596_consen 319 DIFYWTG 325 (395)
T ss_dssp -EEEE-S
T ss_pred CEEEEeC
Confidence 5544443
No 334
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.11 E-value=0.022 Score=57.50 Aligned_cols=177 Identities=10% Similarity=-0.031 Sum_probs=95.3
Q ss_pred eccccCcEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccc
Q 037288 252 VASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRG 331 (513)
Q Consensus 252 ~~~h~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~ 331 (513)
+.........+.++|+|+++++++++...|+.....+... .+.-....|.+ .+.+|+-..+++|.++.--+....
T Consensus 28 lg~~~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~----~G~g~~~vw~~-~n~yAv~~~~~~I~I~kn~~~~~~ 102 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKA----FGSGLSFVWSS-RNRYAVLESSSTIKIYKNFKNEVV 102 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEE----EEE-SEEEE-T-SSEEEEE-TTS-EEEEETTEE-TT
T ss_pred CCCCCcCCeeEEECCCCCEEEEEcCCEEEEEEccCCcccc----cCceeEEEEec-CccEEEEECCCeEEEEEcCccccc
Confidence 4444456789999999999999999998788754433322 23345677887 445677767889999732222211
Q ss_pred cccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccc
Q 037288 332 CSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGA 411 (513)
Q Consensus 332 ~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~ 411 (513)
. .+..+..+..+ |. |.+|+..+.+ .|.+||.. +...
T Consensus 103 k-------------------------------------~i~~~~~~~~I--f~--G~LL~~~~~~-~i~~yDw~--~~~~ 138 (443)
T PF04053_consen 103 K-------------------------------------SIKLPFSVEKI--FG--GNLLGVKSSD-FICFYDWE--TGKL 138 (443)
T ss_dssp ------------------------------------------SS-EEEE--E---SSSEEEEETT-EEEEE-TT--T--E
T ss_pred e-------------------------------------EEcCCcccceE--Ec--CcEEEEECCC-CEEEEEhh--Hcce
Confidence 1 11111122222 32 7777777654 89999996 5557
Q ss_pred eEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-----------eEEEEecCCCCCeEEEEEcCCCceEEe
Q 037288 412 VQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSG-----------ELVFEDKFSNSVPSAVCWRTQRSMGPQ 480 (513)
Q Consensus 412 ~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~-----------~~~~~~~~~~~~v~~v~~~p~~~~~~t 480 (513)
+..+... .|.. +.|+++|.+++-.+.| .+.|++.... ..+..+..-...|.+.+|..+-.++.|
T Consensus 139 i~~i~v~--~vk~--V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d~fiYtT 213 (443)
T PF04053_consen 139 IRRIDVS--AVKY--VIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVEDCFIYTT 213 (443)
T ss_dssp EEEESS---E-EE--EEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETTEEEEE-
T ss_pred eeEEecC--CCcE--EEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcCEEEEEc
Confidence 8877733 2444 8999999999888755 6888775433 022222221456889999988333333
Q ss_pred eC
Q 037288 481 IE 482 (513)
Q Consensus 481 ~~ 482 (513)
..
T Consensus 214 ~~ 215 (443)
T PF04053_consen 214 SN 215 (443)
T ss_dssp TT
T ss_pred CC
Confidence 33
No 335
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.03 E-value=0.062 Score=48.67 Aligned_cols=123 Identities=12% Similarity=0.167 Sum_probs=82.9
Q ss_pred CcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCC
Q 037288 308 GNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYD 387 (513)
Q Consensus 308 ~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 387 (513)
..+++.|+..+.+...|..++.... ... ....+.+.... -|
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~W--e~i-----------------------------------lg~RiE~sa~v--vg 63 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIW--EAI-----------------------------------LGVRIECSAIV--VG 63 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEe--ehh-----------------------------------hCceeeeeeEE--EC
Confidence 3678888888888888887776422 000 01111221122 37
Q ss_pred CEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeE
Q 037288 388 QYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPS 467 (513)
Q Consensus 388 ~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~ 467 (513)
++++.|...|.+++.+.. ....+..+..- +.|.+ +...++++..+.+|+.|++.+.-|.++..++...+..++...
T Consensus 64 dfVV~GCy~g~lYfl~~~--tGs~~w~f~~~-~~vk~-~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~ 139 (354)
T KOG4649|consen 64 DFVVLGCYSGGLYFLCVK--TGSQIWNFVIL-ETVKV-RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFV 139 (354)
T ss_pred CEEEEEEccCcEEEEEec--chhheeeeeeh-hhhcc-ceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceec
Confidence 789999999999999986 33355555422 22222 245678899999999999999999999999998776665555
Q ss_pred EEEEcC
Q 037288 468 AVCWRT 473 (513)
Q Consensus 468 ~v~~~p 473 (513)
+-+..|
T Consensus 140 sP~i~~ 145 (354)
T KOG4649|consen 140 SPVIAP 145 (354)
T ss_pred cceecC
Confidence 555666
No 336
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.00 E-value=0.0075 Score=61.66 Aligned_cols=150 Identities=13% Similarity=0.087 Sum_probs=102.5
Q ss_pred eEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCce
Q 037288 299 ILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSIS 378 (513)
Q Consensus 299 V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~ 378 (513)
|.--+++..+.+++.|+.-|.+++|+-..+.... + .......++
T Consensus 36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~----~--------------------------------~~~~~~~~~ 79 (726)
T KOG3621|consen 36 VKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRK----L--------------------------------KNEGATGIT 79 (726)
T ss_pred EEEEEeecCCceEEEecccceEEEEecCchhhhc----c--------------------------------cccCccceE
Confidence 4333455678899999999999999887665321 0 011133455
Q ss_pred EEEEEcCCCCEEEEEecCCeEEEEecCCCCccc---eEEe-cCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe
Q 037288 379 CLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGA---VQSY-EGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGE 454 (513)
Q Consensus 379 ~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~---~~~~-~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~ 454 (513)
+...++++..++|.|+..|.|.++-+....... +..+ +.|...|++ ++|++++..+++|...|+|.+-.+.+..
T Consensus 80 ~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTa--l~Ws~~~~k~ysGD~~Gkv~~~~L~s~~ 157 (726)
T KOG3621|consen 80 CVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTA--LEWSKNGMKLYSGDSQGKVVLTELDSRQ 157 (726)
T ss_pred EEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEE--EEecccccEEeecCCCceEEEEEechhh
Confidence 667888899999999999999999886311111 1122 236677777 9999999999999999999998887721
Q ss_pred ----EEEEecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288 455 ----LVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIH 486 (513)
Q Consensus 455 ----~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~ 486 (513)
..+.+..-++.|-.+.+.....+++|.-+-+-
T Consensus 158 ~~~~~~q~il~~ds~IVQlD~~q~~LLVStl~r~~L 193 (726)
T KOG3621|consen 158 AFLSKSQEILSEDSEIVQLDYLQSYLLVSTLTRCIL 193 (726)
T ss_pred hhccccceeeccCcceEEeecccceehHhhhhhhhe
Confidence 22223334677888888777666666554443
No 337
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.97 E-value=0.3 Score=47.58 Aligned_cols=204 Identities=11% Similarity=0.094 Sum_probs=117.1
Q ss_pred eEEEEECCCCcEEEEee--eCCCeEEEEEec---C----CcEEEEEeC----------CCeEEEEECCCC-c---ccccc
Q 037288 278 GAAMVDMETGMASWVCR--SKSDILAQQVIH---S----GNVVLCGFR----------NGAIVTVDVRKR-Q---RGCSS 334 (513)
Q Consensus 278 ~i~vwd~~~~~~~~~~~--~~~~V~~l~~~~---~----~~~l~sg~~----------dg~i~iwd~~~~-~---~~~~~ 334 (513)
.|++.|..+.+.+..+. ....+++++... + ..+|++|+. .|.|.++++... . ... +
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~-~ 81 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK-L 81 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE-E
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEE-E
Confidence 47888888887766655 223355555432 2 467777753 289999999884 1 111 1
Q ss_pred ccccccCcCeEEEeeCC-eEEEeE------eecccCc-ccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCC
Q 037288 335 RAGRRHRIPYSRLQRND-RVTNEQ------WFELKAN-IWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRL 406 (513)
Q Consensus 335 ~~~~~h~~~v~~v~~~~-~~~s~~------w~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~ 406 (513)
..-....++|++++--. .++.+. |+....+ +.+......+..+.++..+ ++++++|+....+.++..+.
T Consensus 82 i~~~~~~g~V~ai~~~~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~---~~~I~vgD~~~sv~~~~~~~ 158 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSFNGRLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF---KNYILVGDAMKSVSLLRYDE 158 (321)
T ss_dssp EEEEEESS-EEEEEEETTEEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE---TTEEEEEESSSSEEEEEEET
T ss_pred EEEEeecCcceEhhhhCCEEEEeecCEEEEEEccCcccchhhheecceEEEEEEecc---ccEEEEEEcccCEEEEEEEc
Confidence 22234578888887655 555554 6666655 5555555555566666554 67999999988999886542
Q ss_pred CCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-------C--eEEEEec-CCCCCeEEE---EEcC
Q 037288 407 TTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRS-------G--ELVFEDK-FSNSVPSAV---CWRT 473 (513)
Q Consensus 407 ~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~-------~--~~~~~~~-~~~~~v~~v---~~~p 473 (513)
....+..+..........++.|-++++.++.+..+|.+.++.... + ++..... +.+..|+++ +..|
T Consensus 159 -~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~ 237 (321)
T PF03178_consen 159 -ENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIP 237 (321)
T ss_dssp -TTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS-
T ss_pred -cCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeee
Confidence 122233333333344445567765667899999999999998752 2 2222222 224557777 4444
Q ss_pred C-----C-----ceEEeeCCCee
Q 037288 474 Q-----R-----SMGPQIEGKIH 486 (513)
Q Consensus 474 ~-----~-----~~~~t~~~~~~ 486 (513)
. . .+++|.++.+-
T Consensus 238 ~~~~~~~~~~~~i~~~T~~G~Ig 260 (321)
T PF03178_consen 238 RSGSSESPNRPQILYGTVDGSIG 260 (321)
T ss_dssp -SSSS-TTEEEEEEEEETTS-EE
T ss_pred cCCCCcccccceEEEEecCCEEE
Confidence 1 1 56666666655
No 338
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.96 E-value=0.021 Score=61.04 Aligned_cols=199 Identities=17% Similarity=0.229 Sum_probs=112.3
Q ss_pred CeEEEEECCCCcEEEEeeeCCCeEEEEEecC-------CcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEee
Q 037288 277 LGAAMVDMETGMASWVCRSKSDILAQQVIHS-------GNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQR 349 (513)
Q Consensus 277 ~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~-------~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~ 349 (513)
+.++-.|+++|+.+.....+..+.-..+.|+ ..-.+.|-.+..++.||.|-..... + .-..
T Consensus 504 ~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~-v-~~~~---------- 571 (794)
T PF08553_consen 504 NKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKL-V-DSQS---------- 571 (794)
T ss_pred CceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCce-e-eccc----------
Confidence 4588899999998887775444434445553 3356778888999999999654211 0 0000
Q ss_pred CCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEE
Q 037288 350 NDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGV 429 (513)
Q Consensus 350 ~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~ 429 (513)
+.........|+ +-+ ...+||+|+.+|.||+||-- ....-..+.+-..+|.. +++
T Consensus 572 -------------------k~Y~~~~~Fs~~-aTt-~~G~iavgs~~G~IRLyd~~--g~~AKT~lp~lG~pI~~--iDv 626 (794)
T PF08553_consen 572 -------------------KQYSSKNNFSCF-ATT-EDGYIAVGSNKGDIRLYDRL--GKRAKTALPGLGDPIIG--IDV 626 (794)
T ss_pred -------------------cccccCCCceEE-Eec-CCceEEEEeCCCcEEeeccc--chhhhhcCCCCCCCeeE--EEe
Confidence 111112223333 333 45578999999999999942 12234445666778777 888
Q ss_pred cCCCCEEEEEeCCCcEEEEeCC--CC----eEEEE--ec-CCCCCeEEEEEcCCCceEE--eeCCCee-eeeccCC-ccc
Q 037288 430 DQSERFVMSGGEDCKLRIWSIR--SG----ELVFE--DK-FSNSVPSAVCWRTQRSMGP--QIEGKIH-EEFDLGQ-RHS 496 (513)
Q Consensus 430 s~~g~~l~sg~~Dg~v~vwd~~--~~----~~~~~--~~-~~~~~v~~v~~~p~~~~~~--t~~~~~~-~~~~~~~-~~~ 496 (513)
+.||+||++.+ +..|.|+++. +| +.-+. +. .......-+...|....++ ..+..+. ....|.. ...
T Consensus 627 t~DGkwilaTc-~tyLlLi~t~~~~g~~~g~~GF~~~~~~~~kp~Pr~L~L~pe~~~~~~~~~~~~~~Ft~a~Fnt~~~~ 705 (794)
T PF08553_consen 627 TADGKWILATC-KTYLLLIDTLIKDGKNSGKLGFEKSFGKDKKPQPRRLQLKPEHVAYMQHETGKPISFTPAKFNTGIGK 705 (794)
T ss_pred cCCCcEEEEee-cceEEEEEEeeecCCccCccccccccCccCCCCCeEEecCHHHHHHHHhccCCCceeeceEEecCCCC
Confidence 89999999887 4567777753 22 22111 21 1223355566666532222 1122222 1111221 122
Q ss_pred ceeeeeeccceeeeecC
Q 037288 497 WEAWIGTQEGLFRMNWS 513 (513)
Q Consensus 497 ~~~~~gs~~g~~~~~~~ 513 (513)
...+|-+-.|-|.+.|+
T Consensus 706 ~E~~IvtstG~f~v~Wn 722 (794)
T PF08553_consen 706 QETSIVTSTGPFVVTWN 722 (794)
T ss_pred ccceEEEeccCEEEEEE
Confidence 44566667777777774
No 339
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.0039 Score=62.87 Aligned_cols=90 Identities=10% Similarity=0.038 Sum_probs=73.5
Q ss_pred EEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec
Q 037288 381 QSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDK 460 (513)
Q Consensus 381 ~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~ 460 (513)
+.|+|.-.++|++..+|.|-+..+. .+.+.++.-|...++ .+++|.|||+.|+.|-.||+|++-|+.++..+....
T Consensus 26 ~ewnP~~dLiA~~t~~gelli~R~n---~qRlwtip~p~~~v~-~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~ 101 (665)
T KOG4640|consen 26 IEWNPKMDLIATRTEKGELLIHRLN---WQRLWTIPIPGENVT-ASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSFL 101 (665)
T ss_pred EEEcCccchhheeccCCcEEEEEec---cceeEeccCCCCccc-eeeeecCCCCEEEEEecCCeEEEEEccCCCceeccc
Confidence 4678899999999999999998873 556777776666665 349999999999999999999999999999888732
Q ss_pred -CCCCCeEEEEEcCC
Q 037288 461 -FSNSVPSAVCWRTQ 474 (513)
Q Consensus 461 -~~~~~v~~v~~~p~ 474 (513)
.-..+|..+-|++.
T Consensus 102 ~s~e~~is~~~w~~~ 116 (665)
T KOG4640|consen 102 FSVETDISKGIWDRI 116 (665)
T ss_pred cccccchheeecccc
Confidence 23567888888754
No 340
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.94 E-value=0.0022 Score=39.22 Aligned_cols=37 Identities=16% Similarity=0.554 Sum_probs=31.6
Q ss_pred ceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 037288 411 AVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWS 449 (513)
Q Consensus 411 ~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd 449 (513)
++..+..|...+.+ +.|++++.++++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTS--VAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeE--EEECCCCCEEEEecCCCeEEEcC
Confidence 45667778888766 88899999999999999999996
No 341
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=96.94 E-value=0.28 Score=46.43 Aligned_cols=186 Identities=13% Similarity=0.040 Sum_probs=105.8
Q ss_pred cEEEEEEcC-CCCEEEEEeC-Ce-EEEEECCCCcEEEEeeeCCC-e--EEEEEecCCcEEEEEeC-----CCeEEEEECC
Q 037288 258 TVWTADFCT-NPSQAVIGTN-LG-AAMVDMETGMASWVCRSKSD-I--LAQQVIHSGNVVLCGFR-----NGAIVTVDVR 326 (513)
Q Consensus 258 ~V~~~~~s~-~g~~l~s~s~-~~-i~vwd~~~~~~~~~~~~~~~-V--~~l~~~~~~~~l~sg~~-----dg~i~iwd~~ 326 (513)
....++.+| .+..++.+-. ++ ..+||..+++....+..... - ---.|++||++|++.-. .|.|-|||..
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 344677888 4445555533 34 78999999987766653222 1 23569999999998754 4899999998
Q ss_pred C-CccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEE------------
Q 037288 327 K-RQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLAS------------ 393 (513)
Q Consensus 327 ~-~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~------------ 393 (513)
. .+. +..+..|-..-..+ .+.|+++.|+++
T Consensus 86 ~~~~r---i~E~~s~GIGPHel----------------------------------~l~pDG~tLvVANGGI~Thpd~GR 128 (305)
T PF07433_consen 86 RGYRR---IGEFPSHGIGPHEL----------------------------------LLMPDGETLVVANGGIETHPDSGR 128 (305)
T ss_pred CCcEE---EeEecCCCcChhhE----------------------------------EEcCCCCEEEEEcCCCccCcccCc
Confidence 2 222 33444443222222 233445444443
Q ss_pred ------ecCCeEEEEecCCCCccceEE--e--cCCCCceeEEEEEEcCCCCEEEEEeCCCc-------EEEEeCCCCeEE
Q 037288 394 ------SMDGTVKLYDHRLTTRGAVQS--Y--EGHVNSHTRIQLGVDQSERFVMSGGEDCK-------LRIWSIRSGELV 456 (513)
Q Consensus 394 ------s~dg~i~lwd~~~~~~~~~~~--~--~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~-------v~vwd~~~~~~~ 456 (513)
+++-++.+.|.+ +...+.. + ..|..++.. ++++++|..++..-..|. |-+++- ++.+
T Consensus 129 ~kLNl~tM~psL~~ld~~--sG~ll~q~~Lp~~~~~lSiRH--La~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~ 202 (305)
T PF07433_consen 129 AKLNLDTMQPSLVYLDAR--SGALLEQVELPPDLHQLSIRH--LAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGAL 202 (305)
T ss_pred eecChhhcCCceEEEecC--CCceeeeeecCccccccceee--EEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcc
Confidence 445555555554 3333333 3 336666655 788888876555444432 334433 3323
Q ss_pred EEecC-------CCCCeEEEEEcCCC-ceEEeeCCCee
Q 037288 457 FEDKF-------SNSVPSAVCWRTQR-SMGPQIEGKIH 486 (513)
Q Consensus 457 ~~~~~-------~~~~v~~v~~~p~~-~~~~t~~~~~~ 486 (513)
..+.. -..-+-+|++++++ .+.+|+-+.-.
T Consensus 203 ~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~ 240 (305)
T PF07433_consen 203 RLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGR 240 (305)
T ss_pred eeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCE
Confidence 22221 13458899999985 56677666544
No 342
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.0049 Score=62.20 Aligned_cols=92 Identities=14% Similarity=0.132 Sum_probs=71.9
Q ss_pred CcEEEEEEcCCCCEEEEEeCCe-EEEEECCCCcEEEEee-eCCCeE-EEEEecCCcEEEEEeCCCeEEEEECCCCccccc
Q 037288 257 CTVWTADFCTNPSQAVIGTNLG-AAMVDMETGMASWVCR-SKSDIL-AQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCS 333 (513)
Q Consensus 257 ~~V~~~~~s~~g~~l~s~s~~~-i~vwd~~~~~~~~~~~-~~~~V~-~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~ 333 (513)
..|.-+.|+|.-.++|.+..++ +.+..+. .+.++.+. +...++ +++|.|||++|+.|-.||+|++.|+..+....
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~- 98 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV- 98 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee-
Confidence 5788999999999999986655 8888777 67778887 566676 99999999999999999999999999887543
Q ss_pred cccccccCcCeEEEeeCC
Q 037288 334 SRAGRRHRIPYSRLQRND 351 (513)
Q Consensus 334 ~~~~~~h~~~v~~v~~~~ 351 (513)
........+|.++-|.+
T Consensus 99 -~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 -SFLFSVETDISKGIWDR 115 (665)
T ss_pred -ccccccccchheeeccc
Confidence 11233455666666643
No 343
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.84 E-value=0.0039 Score=38.08 Aligned_cols=30 Identities=13% Similarity=0.173 Sum_probs=27.8
Q ss_pred eCCCeEEEEEecCCcEEEEEeCCCeEEEEE
Q 037288 295 SKSDILAQQVIHSGNVVLCGFRNGAIVTVD 324 (513)
Q Consensus 295 ~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd 324 (513)
|...|.+++|++++..+++++.|+.+++||
T Consensus 11 ~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 11 HTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 667899999999999999999999999996
No 344
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.70 E-value=0.21 Score=39.47 Aligned_cols=67 Identities=9% Similarity=0.066 Sum_probs=47.2
Q ss_pred EEEEEEcC---CC-CEEEEEeCCe-EEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCC
Q 037288 259 VWTADFCT---NP-SQAVIGTNLG-AAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKR 328 (513)
Q Consensus 259 V~~~~~s~---~g-~~l~s~s~~~-i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~ 328 (513)
|.++++.. +| ..|++|+++. |++|+-+ ..+..+.-.+.|+++.-... ..++.|..+|+|-+|+-...
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~R 73 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQR 73 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCcce
Confidence 44555543 44 3667776665 9999764 45666666778888887655 66888999999999977443
No 345
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.62 E-value=0.065 Score=55.44 Aligned_cols=149 Identities=9% Similarity=0.043 Sum_probs=88.6
Q ss_pred CCCCEEEEEeCCeEEEEECCC-----CcEEEEeeeCCCeEEEEEecCCcEEEEE-eCCCeEEEEECCCCccccccccccc
Q 037288 266 TNPSQAVIGTNLGAAMVDMET-----GMASWVCRSKSDILAQQVIHSGNVVLCG-FRNGAIVTVDVRKRQRGCSSRAGRR 339 (513)
Q Consensus 266 ~~g~~l~s~s~~~i~vwd~~~-----~~~~~~~~~~~~V~~l~~~~~~~~l~sg-~~dg~i~iwd~~~~~~~~~~~~~~~ 339 (513)
++|++... .++.|.+.|..+ ...+..+.-......++++|||++++++ ..+.+|.|+|+...+... -..+ .
T Consensus 286 kdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~-~~~~-~ 362 (635)
T PRK02888 286 KAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLF-DGKI-K 362 (635)
T ss_pred hCCCEEEE-CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhh-hccC-C
Confidence 46665554 356799999998 4566667777778999999999866655 459999999998765311 0011 0
Q ss_pred cCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCC------C--ccc
Q 037288 340 HRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLT------T--RGA 411 (513)
Q Consensus 340 h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~------~--~~~ 411 (513)
.+..|.+ .+........ ..|..+|+.+.+-..|..|..||+... + ...
T Consensus 363 ~~~~vva-----------------------evevGlGPLH-TaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v 418 (635)
T PRK02888 363 PRDAVVA-----------------------EPELGLGPLH-TAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPI 418 (635)
T ss_pred ccceEEE-----------------------eeccCCCcce-EEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcc
Confidence 0111100 1111111111 367888888888888999999998620 0 123
Q ss_pred eEEecCCCCceeE---EEEEEcCCCCEEEEEeC
Q 037288 412 VQSYEGHVNSHTR---IQLGVDQSERFVMSGGE 441 (513)
Q Consensus 412 ~~~~~~h~~~v~~---~~~~~s~~g~~l~sg~~ 441 (513)
+..+.-|-++... ..=.-.|+|+||++...
T Consensus 419 ~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk 451 (635)
T PRK02888 419 VQKLDVHYQPGHNHASMGETKEADGKWLVSLNK 451 (635)
T ss_pred eecccCCCccceeeecCCCcCCCCCCEEEEccc
Confidence 4444444333211 00122678899888643
No 346
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.60 E-value=0.27 Score=49.88 Aligned_cols=146 Identities=10% Similarity=0.035 Sum_probs=74.9
Q ss_pred CCEEEEEeCCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEE
Q 037288 268 PSQAVIGTNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRL 347 (513)
Q Consensus 268 g~~l~s~s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v 347 (513)
|.+|...+++.|.+||.++++.+..+.... |..+.|+++|.+++..+.+ .+.+++........ ..-.|....+..
T Consensus 117 G~LL~~~~~~~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~--~~~~g~e~~f~~- 191 (443)
T PF04053_consen 117 GNLLGVKSSDFICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKD-SIYILKYNLEAVAA--IPEEGVEDAFEL- 191 (443)
T ss_dssp SSSEEEEETTEEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHH--BTTTB-GGGEEE-
T ss_pred CcEEEEECCCCEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCC-eEEEEEecchhccc--ccccCchhceEE-
Confidence 888888888899999999999988887554 9999999999999888755 67777654331000 000000000100
Q ss_pred eeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEE
Q 037288 348 QRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQL 427 (513)
Q Consensus 348 ~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~ 427 (513)
.......|.+..|. +..|+..+.. .++. +...+.+.+..+. .+++. +
T Consensus 192 ----------------------~~E~~~~IkSg~W~---~d~fiYtT~~-~lkY--l~~Ge~~~i~~ld---~~~yl--l 238 (443)
T PF04053_consen 192 ----------------------IHEISERIKSGCWV---EDCFIYTTSN-HLKY--LVNGETGIIAHLD---KPLYL--L 238 (443)
T ss_dssp ----------------------EEEE-S--SEEEEE---TTEEEEE-TT-EEEE--EETTEEEEEEE-S---S--EE--E
T ss_pred ----------------------EEEecceeEEEEEE---cCEEEEEcCC-eEEE--EEcCCcceEEEcC---CceEE--E
Confidence 11113445554443 3366666655 6665 3211222444443 34444 6
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCC
Q 037288 428 GVDQSERFVMSGGEDCKLRIWSIR 451 (513)
Q Consensus 428 ~~s~~g~~l~sg~~Dg~v~vwd~~ 451 (513)
.+.++.+.|+....|+.|..+.+.
T Consensus 239 gy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 239 GYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp EEETTTTEEEEE-TT--EEEEE--
T ss_pred EEEccCCEEEEEECCCCEEEEEEC
Confidence 666777788888888888887664
No 347
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.59 E-value=0.57 Score=44.99 Aligned_cols=101 Identities=11% Similarity=0.126 Sum_probs=68.1
Q ss_pred EEEcCCCCEEEEEec-CCeEEEEecCCCCc---cc--eEEecCCCCceeEEEEEEcCCCCEEEEEeCCC-cEEEEeCCCC
Q 037288 381 QSLQLYDQYFLASSM-DGTVKLYDHRLTTR---GA--VQSYEGHVNSHTRIQLGVDQSERFVMSGGEDC-KLRIWSIRSG 453 (513)
Q Consensus 381 ~~~~~~~~~l~s~s~-dg~i~lwd~~~~~~---~~--~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg-~v~vwd~~~~ 453 (513)
++|+|+++.|..+.. .+.|.-|++..... .. ...+..+.+..-. ++++.+|.+-+++..+| .|.+|+.. |
T Consensus 168 la~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG--~~vDadG~lw~~a~~~g~~v~~~~pd-G 244 (307)
T COG3386 168 LAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDG--MAVDADGNLWVAAVWGGGRVVRFNPD-G 244 (307)
T ss_pred eEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCc--eEEeCCCCEEEecccCCceEEEECCC-C
Confidence 589999987777665 47888887752001 11 1122222222223 66778888776555554 89999988 9
Q ss_pred eEEEEecCCCCCeEEEEEcCC--CceEEeeCCC
Q 037288 454 ELVFEDKFSNSVPSAVCWRTQ--RSMGPQIEGK 484 (513)
Q Consensus 454 ~~~~~~~~~~~~v~~v~~~p~--~~~~~t~~~~ 484 (513)
+++..+......+++++|--. ..+++|+...
T Consensus 245 ~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 245 KLLGEIKLPVKRPTNPAFGGPDLNTLYITSARS 277 (307)
T ss_pred cEEEEEECCCCCCccceEeCCCcCEEEEEecCC
Confidence 999998877677899999764 6777777665
No 348
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.39 E-value=0.23 Score=50.03 Aligned_cols=138 Identities=13% Similarity=0.139 Sum_probs=83.0
Q ss_pred CCCEEEEEeCCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEE
Q 037288 267 NPSQAVIGTNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSR 346 (513)
Q Consensus 267 ~g~~l~s~s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~ 346 (513)
++.+++.+.++.+..+|..+|+.++....... ..+ ..++..|+.++.+|.+..+|..+++.......+. + .
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~-~~~--~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~-~--~--- 326 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREYGSV-NDF--AVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLL-H--R--- 326 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecCCCc-cCc--EEECCEEEEEcCCCeEEEEECCCCcEEEcccccC-C--C---
Confidence 45555555677799999999998886653221 122 2246677788899999999998876422000000 0 0
Q ss_pred EeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEE
Q 037288 347 LQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQ 426 (513)
Q Consensus 347 v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~ 426 (513)
...++ .+ .+.+++.++.||.+.+.|.. +...+..++-....+..-.
T Consensus 327 -------------------------~~~sp-----~v--~~g~l~v~~~~G~l~~ld~~--tG~~~~~~~~~~~~~~s~P 372 (394)
T PRK11138 327 -------------------------LLTAP-----VL--YNGYLVVGDSEGYLHWINRE--DGRFVAQQKVDSSGFLSEP 372 (394)
T ss_pred -------------------------cccCC-----EE--ECCEEEEEeCCCEEEEEECC--CCCEEEEEEcCCCcceeCC
Confidence 00000 11 25677888999999999986 4445555443322222211
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeC
Q 037288 427 LGVDQSERFVMSGGEDCKLRIWSI 450 (513)
Q Consensus 427 ~~~s~~g~~l~sg~~Dg~v~vwd~ 450 (513)
+ + .+..|+.++.||.|+.+++
T Consensus 373 ~-~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 373 V-V--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred E-E--ECCEEEEEeCCceEEEEeC
Confidence 1 1 2557888999999988764
No 349
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.34 E-value=0.8 Score=41.76 Aligned_cols=109 Identities=19% Similarity=0.283 Sum_probs=75.7
Q ss_pred CCEEEEEeCCe-EEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEE
Q 037288 268 PSQAVIGTNLG-AAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSR 346 (513)
Q Consensus 268 g~~l~s~s~~~-i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~ 346 (513)
..+++.|+..+ +...|..+|...+.......+.+-+.- -|++++.|+..|.+++.+.+++....
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w-------------- 87 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIW-------------- 87 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhhee--------------
Confidence 34666777655 677888888887765555555443332 47789999999999999999986432
Q ss_pred EeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEec
Q 037288 347 LQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYE 416 (513)
Q Consensus 347 v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~ 416 (513)
.+..-+.|.+.....+++..+..|+.|++.+..|.+ ..+++...+
T Consensus 88 -----------------------~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~--~~~cVyksk 132 (354)
T KOG4649|consen 88 -----------------------NFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPK--TYGCVYKSK 132 (354)
T ss_pred -----------------------eeeehhhhccceEEcCCCceEEEecCCCcEEEeccc--ccceEEecc
Confidence 111122233334566789999999999999999997 555665544
No 350
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.28 E-value=0.061 Score=57.65 Aligned_cols=92 Identities=12% Similarity=0.125 Sum_probs=60.3
Q ss_pred EEEEecCCeEEEEecCCCCccceE----EecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEE-ecCCCC
Q 037288 390 FLASSMDGTVKLYDHRLTTRGAVQ----SYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFE-DKFSNS 464 (513)
Q Consensus 390 l~s~s~dg~i~lwd~~~~~~~~~~----~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~-~~~~~~ 464 (513)
-..|-.+..+..||.|......+. .|. ......+ ++-+.+| +||.|+.+|.||+|| +.|+...+ +.+-+.
T Consensus 545 tflGls~n~lfriDpR~~~~k~v~~~~k~Y~-~~~~Fs~--~aTt~~G-~iavgs~~G~IRLyd-~~g~~AKT~lp~lG~ 619 (794)
T PF08553_consen 545 TFLGLSDNSLFRIDPRLSGNKLVDSQSKQYS-SKNNFSC--FATTEDG-YIAVGSNKGDIRLYD-RLGKRAKTALPGLGD 619 (794)
T ss_pred eEEEECCCceEEeccCCCCCceeeccccccc-cCCCceE--EEecCCc-eEEEEeCCCcEEeec-ccchhhhhcCCCCCC
Confidence 455667789999999953322221 121 1222233 5545555 799999999999999 45544444 456688
Q ss_pred CeEEEEEcCCC-ceEEeeCCCee
Q 037288 465 VPSAVCWRTQR-SMGPQIEGKIH 486 (513)
Q Consensus 465 ~v~~v~~~p~~-~~~~t~~~~~~ 486 (513)
||.+|..+.++ .++||+..-+.
T Consensus 620 pI~~iDvt~DGkwilaTc~tyLl 642 (794)
T PF08553_consen 620 PIIGIDVTADGKWILATCKTYLL 642 (794)
T ss_pred CeeEEEecCCCcEEEEeecceEE
Confidence 99999999995 56666655444
No 351
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.25 E-value=0.01 Score=61.86 Aligned_cols=107 Identities=10% Similarity=0.087 Sum_probs=76.6
Q ss_pred EEEEcCCCCEEEEEe-----CCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccc
Q 037288 261 TADFCTNPSQAVIGT-----NLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSR 335 (513)
Q Consensus 261 ~~~~s~~g~~l~s~s-----~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~ 335 (513)
-..|+|...++|+++ .+.|.|+ .++|++..-...+-.+++++|+|..-+|+.|=.-|.+.+|.....+...
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ht--- 95 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHT--- 95 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEE-ecCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCceeee---
Confidence 457888888888764 3446666 3445544333333446789999999999999899999999887665322
Q ss_pred cccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecC
Q 037288 336 AGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHR 405 (513)
Q Consensus 336 ~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~ 405 (513)
....|..+|..+ .|+++|..++++..-|.|.+|.+.
T Consensus 96 v~~th~a~i~~l----------------------------------~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 96 VVETHPAPIQGL----------------------------------DWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eccCCCCCceeE----------------------------------EecCCCCeEEEcCCCceeEEEEee
Confidence 334455555553 456799999999999999999875
No 352
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.21 E-value=0.014 Score=62.53 Aligned_cols=79 Identities=19% Similarity=0.308 Sum_probs=57.6
Q ss_pred CCCEEEEEeCCe-EEEEECCCCcE--EEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcC
Q 037288 267 NPSQAVIGTNLG-AAMVDMETGMA--SWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIP 343 (513)
Q Consensus 267 ~g~~l~s~s~~~-i~vwd~~~~~~--~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~ 343 (513)
.+..++.|++.+ +...|..+.-. .+-....++|++++|+.+|.+++.|-.+|.|.+||+..++. ++.+..|..+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~---l~~i~e~~ap 174 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKI---LKVITEHGAP 174 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcc---eeeeeecCCc
Confidence 555778787665 77777654311 11122567899999999999999999999999999998776 4466767666
Q ss_pred eEEEe
Q 037288 344 YSRLQ 348 (513)
Q Consensus 344 v~~v~ 348 (513)
...+-
T Consensus 175 ~t~vi 179 (1206)
T KOG2079|consen 175 VTGVI 179 (1206)
T ss_pred cceEE
Confidence 66543
No 353
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.16 E-value=0.022 Score=50.59 Aligned_cols=142 Identities=15% Similarity=0.125 Sum_probs=76.2
Q ss_pred EEEEEeCCeEEEEECCCCcEEEEeeeCCCeEEEEEe-cCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEe
Q 037288 270 QAVIGTNLGAAMVDMETGMASWVCRSKSDILAQQVI-HSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQ 348 (513)
Q Consensus 270 ~l~s~s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~-~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~ 348 (513)
++++.+++.|+-+++..-+.. .+....+.+..-- .-+.-+++|+.+|.|.+|......... .
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s--~rse~~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~---------d------ 95 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKES--CRSERFIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHS---------D------ 95 (238)
T ss_pred hccccCCcccccchhhhhhhh--hhhhhhhhcceeecccCceEEeecccceEEEecCCccchHH---------H------
Confidence 445556666666665432211 0111112222111 234679999999999999887332111 0
Q ss_pred eCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCC-CceeEEEE
Q 037288 349 RNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHV-NSHTRIQL 427 (513)
Q Consensus 349 ~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~-~~v~~~~~ 427 (513)
........+.+++..-.++.+..+++.||.|+.|++. ....+.....|. .+... +
T Consensus 96 --------------------~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~--p~k~~g~~g~h~~~~~e~--~ 151 (238)
T KOG2444|consen 96 --------------------RVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIK--PNKVLGYVGQHNFESGEE--L 151 (238)
T ss_pred --------------------hhhcccccceeccccccccceeEEeccCCceeeeccc--cCceeeeeccccCCCcce--e
Confidence 0111122333433444456688999999999999985 222332223333 22222 3
Q ss_pred EEcCCCCEEEEE--eCCCcEEEEeCCC
Q 037288 428 GVDQSERFVMSG--GEDCKLRIWSIRS 452 (513)
Q Consensus 428 ~~s~~g~~l~sg--~~Dg~v~vwd~~~ 452 (513)
.....+++|+.+ |.|..++.|++..
T Consensus 152 ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 152 IVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred EEecCCceEEeeccccchhhhhcchhh
Confidence 444556667766 7777777777653
No 354
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.14 E-value=1.7 Score=43.51 Aligned_cols=174 Identities=11% Similarity=0.050 Sum_probs=113.3
Q ss_pred EEEEEEcCCCCEEE-EE-eCCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeC---CCeEEEEECCCCccccc
Q 037288 259 VWTADFCTNPSQAV-IG-TNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFR---NGAIVTVDVRKRQRGCS 333 (513)
Q Consensus 259 V~~~~~s~~g~~l~-s~-s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~---dg~i~iwd~~~~~~~~~ 333 (513)
-..++.++.+..+. .. .++.|.+.|..+........-......+++++++..++.+.. ++++.+.|..+.....
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~- 154 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA- 154 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE-
Confidence 34677778777444 33 356799999888877776665557789999999977766655 6888888887766432
Q ss_pred cccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEe-cCCeEEEEecCCCCccce
Q 037288 334 SRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASS-MDGTVKLYDHRLTTRGAV 412 (513)
Q Consensus 334 ~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s-~dg~i~lwd~~~~~~~~~ 412 (513)
. ......- .-+.++|+|+.+.++. .++.|.+.|.. ...+
T Consensus 155 --~----------------------------------~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~---~~~v 194 (381)
T COG3391 155 --T----------------------------------IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTS---GNSV 194 (381)
T ss_pred --E----------------------------------EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCC---Ccce
Confidence 1 1110001 1257888999666655 68899999974 3222
Q ss_pred EE------ecCCCCceeEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCeEEEEecCCCC-CeEEEEEcCCCc
Q 037288 413 QS------YEGHVNSHTRIQLGVDQSERFVMSGGED---CKLRIWSIRSGELVFEDKFSNS-VPSAVCWRTQRS 476 (513)
Q Consensus 413 ~~------~~~h~~~v~~~~~~~s~~g~~l~sg~~D---g~v~vwd~~~~~~~~~~~~~~~-~v~~v~~~p~~~ 476 (513)
.. ...+..+ ..+.++|+|..+...... +.+...|..++........-.. ....+..+|++.
T Consensus 195 ~~~~~~~~~~~~~~P---~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~ 265 (381)
T COG3391 195 VRGSVGSLVGVGTGP---AGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGK 265 (381)
T ss_pred eccccccccccCCCC---ceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCC
Confidence 21 2222222 337889999977665543 5899999999887776211111 456788888843
No 355
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.14 E-value=0.34 Score=53.21 Aligned_cols=152 Identities=13% Similarity=0.192 Sum_probs=93.7
Q ss_pred CCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCC
Q 037288 296 KSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPS 375 (513)
Q Consensus 296 ~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~ 375 (513)
...|.++.|..+.+-++.+..+|.|.+-|..+..... .-....
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-------------------------------------vg~vd~ 110 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEI-------------------------------------VGNVDN 110 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceee-------------------------------------eeeccC
Confidence 3579999999999999999999999999887665321 111122
Q ss_pred CceEEEEEcCCCCEEEEEecCCeEEEEecCC--CCccce-------------------EEecCCCC--------------
Q 037288 376 SISCLQSLQLYDQYFLASSMDGTVKLYDHRL--TTRGAV-------------------QSYEGHVN-------------- 420 (513)
Q Consensus 376 ~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~--~~~~~~-------------------~~~~~h~~-------------- 420 (513)
+|.+ ..|+|+++.++..+.++++.+-+-.. ....++ ..|.|..+
T Consensus 111 GI~a-aswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~ 189 (1265)
T KOG1920|consen 111 GISA-ASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKAL 189 (1265)
T ss_pred ceEE-EeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccc
Confidence 3333 46778888888887777766543210 000000 11211111
Q ss_pred c---e--eEEEEEEcCCCCEEEEEe----CC-CcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288 421 S---H--TRIQLGVDQSERFVMSGG----ED-CKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIH 486 (513)
Q Consensus 421 ~---v--~~~~~~~s~~g~~l~sg~----~D-g~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~ 486 (513)
. + ....++|--||.++++.. .+ ..|+|||-. |.+-..-......-.+++|-|.+..+|+...+-.
T Consensus 190 ~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~s 264 (1265)
T KOG1920|consen 190 EQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTS 264 (1265)
T ss_pred cchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCC
Confidence 0 0 002277888999988732 24 789999976 5554443333444568999999888888766544
No 356
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.12 E-value=0.18 Score=50.94 Aligned_cols=68 Identities=10% Similarity=0.048 Sum_probs=44.6
Q ss_pred CcEEEEEEcCCCCEEEEEe--CCe--EEEEECCCCcEEEEeeeCCCeEEEEEecCCc-EEEEEeCCCeEEEEE
Q 037288 257 CTVWTADFCTNPSQAVIGT--NLG--AAMVDMETGMASWVCRSKSDILAQQVIHSGN-VVLCGFRNGAIVTVD 324 (513)
Q Consensus 257 ~~V~~~~~s~~g~~l~s~s--~~~--i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~-~l~sg~~dg~i~iwd 324 (513)
..-..-+|+|||+.|+.+. ++. |.+.|+.++....+....+.-..=.|+|||+ ++++.++.|.-.||-
T Consensus 238 g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~ 310 (425)
T COG0823 238 GNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYL 310 (425)
T ss_pred CccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEE
Confidence 3445678999999988664 333 7888998887555333333334667899995 555666666555543
No 357
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=95.90 E-value=1.6 Score=41.29 Aligned_cols=134 Identities=15% Similarity=0.118 Sum_probs=82.4
Q ss_pred CCCCEEEEEeCCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCcccccccc---------
Q 037288 266 TNPSQAVIGTNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRA--------- 336 (513)
Q Consensus 266 ~~g~~l~s~s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~--------- 336 (513)
..++.|+.|.++++.++++..............|..+...++-+.+++-+ |+.+.++++..-.... ...
T Consensus 5 ~~~~~L~vGt~~Gl~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~-~~~~~~~~~~~~ 82 (275)
T PF00780_consen 5 SWGDRLLVGTEDGLYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVS-TSAPLAFPKSRS 82 (275)
T ss_pred cCCCEEEEEECCCEEEEEecCCccceeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccc-cccccccccccc
Confidence 36778888998889999994333333333444599999998877666654 5999999987654322 000
Q ss_pred ---ccccCcCeEEEe-eCC-----eEEEeE--------eecccCcc-cceeEeecCCCceEEEEEcCCCCEEEEEecCCe
Q 037288 337 ---GRRHRIPYSRLQ-RND-----RVTNEQ--------WFELKANI-WPSHTTFMPSSISCLQSLQLYDQYFLASSMDGT 398 (513)
Q Consensus 337 ---~~~h~~~v~~v~-~~~-----~~~s~~--------w~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~ 398 (513)
.......+...+ -.. .++... |....... ...+.+..++.+..+.++ ++.++.|..+ .
T Consensus 83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~---~~~i~v~~~~-~ 158 (275)
T PF00780_consen 83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL---GNKICVGTSK-G 158 (275)
T ss_pred ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe---CCEEEEEeCC-c
Confidence 011122233222 001 222221 65544444 566778888888888666 6778888755 4
Q ss_pred EEEEecC
Q 037288 399 VKLYDHR 405 (513)
Q Consensus 399 i~lwd~~ 405 (513)
..+.|+.
T Consensus 159 f~~idl~ 165 (275)
T PF00780_consen 159 FYLIDLN 165 (275)
T ss_pred eEEEecC
Confidence 7788886
No 358
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=95.54 E-value=1.3 Score=43.08 Aligned_cols=137 Identities=12% Similarity=0.071 Sum_probs=80.0
Q ss_pred ccEEEEecCCC-CCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEeCCeEEEEECCCCc-EEEEeeeCC--Ce
Q 037288 224 GSIYALNLDNP-LDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMETGM-ASWVCRSKS--DI 299 (513)
Q Consensus 224 g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~-~~~~~~~~~--~V 299 (513)
|.+.++.+... ....+ . ....-....++|++++-- ++ .++++.+..|.+|++...+ ......+.. .+
T Consensus 62 Gri~v~~i~~~~~~~~~------l-~~i~~~~~~g~V~ai~~~-~~-~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i 132 (321)
T PF03178_consen 62 GRILVFEISESPENNFK------L-KLIHSTEVKGPVTAICSF-NG-RLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYI 132 (321)
T ss_dssp EEEEEEEECSS-----E------E-EEEEEEEESS-EEEEEEE-TT-EEEEEETTEEEEEEEETTSSEEEEEEE-BSSSE
T ss_pred cEEEEEEEEcccccceE------E-EEEEEEeecCcceEhhhh-CC-EEEEeecCEEEEEEccCcccchhhheecceEEE
Confidence 88888887753 10000 0 111223457889998876 34 4888888899999998877 555444444 45
Q ss_pred EEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceE
Q 037288 300 LAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISC 379 (513)
Q Consensus 300 ~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~ 379 (513)
.++.. .+++|+.|.....+.++..+..... +..+. .-..+..+++
T Consensus 133 ~sl~~--~~~~I~vgD~~~sv~~~~~~~~~~~--l~~va-------------------------------~d~~~~~v~~ 177 (321)
T PF03178_consen 133 TSLSV--FKNYILVGDAMKSVSLLRYDEENNK--LILVA-------------------------------RDYQPRWVTA 177 (321)
T ss_dssp EEEEE--ETTEEEEEESSSSEEEEEEETTTE---EEEEE-------------------------------EESS-BEEEE
T ss_pred EEEec--cccEEEEEEcccCEEEEEEEccCCE--EEEEE-------------------------------ecCCCccEEE
Confidence 55554 4779999998888888755442210 11111 1111222333
Q ss_pred EEEEcCCCCEEEEEecCCeEEEEecC
Q 037288 380 LQSLQLYDQYFLASSMDGTVKLYDHR 405 (513)
Q Consensus 380 ~~~~~~~~~~l~s~s~dg~i~lwd~~ 405 (513)
+..+. +++.++++..+|.+.++...
T Consensus 178 ~~~l~-d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 178 AEFLV-DEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEEE--SSSEEEEEETTSEEEEEEE-
T ss_pred EEEec-CCcEEEEEcCCCeEEEEEEC
Confidence 33442 33689999999999999875
No 359
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.49 E-value=0.051 Score=35.75 Aligned_cols=32 Identities=9% Similarity=0.176 Sum_probs=28.9
Q ss_pred eCCCeEEEEEecCCcEEEEEeCCCeEEEEECC
Q 037288 295 SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVR 326 (513)
Q Consensus 295 ~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~ 326 (513)
....|.+++|+|...+||.|+.||.|.++.+.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 34569999999999999999999999999994
No 360
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.24 E-value=0.043 Score=59.04 Aligned_cols=95 Identities=16% Similarity=0.207 Sum_probs=67.7
Q ss_pred CCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCe
Q 037288 387 DQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVP 466 (513)
Q Consensus 387 ~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v 466 (513)
+-.++.|+..|.|-..|.+.. -++...-+.-.++|++ ++|+.+|+.++.|-.+|.|.+||+..+++++.+..+..+.
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~n-L~~~~~ne~v~~~Vts--vafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~ 175 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGN-LGPLHQNERVQGPVTS--VAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPV 175 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcc-cchhhcCCccCCccee--eEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCcc
Confidence 456888998999999998521 1122222333556766 9999999999999999999999999999999988777766
Q ss_pred EEEEE---cCCCc-eEEeeCCC
Q 037288 467 SAVCW---RTQRS-MGPQIEGK 484 (513)
Q Consensus 467 ~~v~~---~p~~~-~~~t~~~~ 484 (513)
+++-+ ..++. ++.+..++
T Consensus 176 t~vi~v~~t~~nS~llt~D~~G 197 (1206)
T KOG2079|consen 176 TGVIFVGRTSQNSKLLTSDTGG 197 (1206)
T ss_pred ceEEEEEEeCCCcEEEEccCCC
Confidence 55443 33433 44444444
No 361
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.01 E-value=3 Score=38.74 Aligned_cols=187 Identities=10% Similarity=0.019 Sum_probs=103.7
Q ss_pred eccccCc--EEEEEEcCCCCEEEEEe-CC--eEEEEECCCCcEEEEeeeCCCe--EEEEEecCCcEEEEEeCCCeEEEEE
Q 037288 252 VASFKCT--VWTADFCTNPSQAVIGT-NL--GAAMVDMETGMASWVCRSKSDI--LAQQVIHSGNVVLCGFRNGAIVTVD 324 (513)
Q Consensus 252 ~~~h~~~--V~~~~~s~~g~~l~s~s-~~--~i~vwd~~~~~~~~~~~~~~~V--~~l~~~~~~~~l~sg~~dg~i~iwd 324 (513)
...|+.. ...+.|..+|.++-+.+ -+ .|+.+|+.+++......-.... -.+... ++.+..-.=.++...+||
T Consensus 38 ~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd 116 (264)
T PF05096_consen 38 TYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYD 116 (264)
T ss_dssp EEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEE
T ss_pred ECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEc
Confidence 3455544 34577766777766543 34 3999999999987766654443 333333 223333334689999999
Q ss_pred CCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEec
Q 037288 325 VRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDH 404 (513)
Q Consensus 325 ~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~ 404 (513)
..+-+... + +..+...-.+ ..+++.|+.+.....+.++|.
T Consensus 117 ~~tl~~~~---~----------------------------------~~y~~EGWGL---t~dg~~Li~SDGS~~L~~~dP 156 (264)
T PF05096_consen 117 PNTLKKIG---T----------------------------------FPYPGEGWGL---TSDGKRLIMSDGSSRLYFLDP 156 (264)
T ss_dssp TTTTEEEE---E----------------------------------EE-SSS--EE---EECSSCEEEE-SSSEEEEE-T
T ss_pred cccceEEE---E----------------------------------EecCCcceEE---EcCCCEEEEECCccceEEECC
Confidence 98765432 1 1111111121 136777887777788999997
Q ss_pred CCCCccceEEecCC--CCceeEE-EEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecC------------C---CCCe
Q 037288 405 RLTTRGAVQSYEGH--VNSHTRI-QLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKF------------S---NSVP 466 (513)
Q Consensus 405 ~~~~~~~~~~~~~h--~~~v~~~-~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~------------~---~~~v 466 (513)
. +.....++... ..++..+ -+-+- +|...|=.=....|..-|..+|+.+..+.. . ....
T Consensus 157 ~--~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVL 233 (264)
T PF05096_consen 157 E--TFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVL 233 (264)
T ss_dssp T--T-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-E
T ss_pred c--ccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCee
Confidence 5 33334333322 1222111 12332 465555555567788889999998886411 1 3568
Q ss_pred EEEEEcCC-CceEEeeC
Q 037288 467 SAVCWRTQ-RSMGPQIE 482 (513)
Q Consensus 467 ~~v~~~p~-~~~~~t~~ 482 (513)
+.+||.|. ..+++|+-
T Consensus 234 NGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 234 NGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EEEEEETTTTEEEEEET
T ss_pred EeEeEeCCCCEEEEEeC
Confidence 99999988 67777753
No 362
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=94.99 E-value=1.8 Score=43.88 Aligned_cols=143 Identities=10% Similarity=0.037 Sum_probs=76.2
Q ss_pred EEEEecCCcEEEEE-eCC----CeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCC
Q 037288 301 AQQVIHSGNVVLCG-FRN----GAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPS 375 (513)
Q Consensus 301 ~l~~~~~~~~l~sg-~~d----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~ 375 (513)
...++|+|++++.+ +.. ..++++|+.+++... . .+.. .
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~---d------~i~~---------------------------~- 170 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLP---D------GIEN---------------------------P- 170 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEE---E------EEEE---------------------------E-
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcC---C------cccc---------------------------c-
Confidence 56678888776655 333 359999999886432 0 0000 0
Q ss_pred CceEEEEEcCCCCEEEEEecCC-----------eEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeC---
Q 037288 376 SISCLQSLQLYDQYFLASSMDG-----------TVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGE--- 441 (513)
Q Consensus 376 ~v~~~~~~~~~~~~l~s~s~dg-----------~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~--- 441 (513)
.... +.|.++++.|+....+. .|+.|.+..........|+........+.+..++|+++|+..+.
T Consensus 171 ~~~~-~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~ 249 (414)
T PF02897_consen 171 KFSS-VSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGT 249 (414)
T ss_dssp ESEE-EEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSS
T ss_pred ccce-EEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccc
Confidence 0011 35667777776665433 37788876322223455665555443455888999999775332
Q ss_pred C-CcEEEEeCCCC-----eEEEEecCCCCCeEEEEEcCCCceEEee
Q 037288 442 D-CKLRIWSIRSG-----ELVFEDKFSNSVPSAVCWRTQRSMGPQI 481 (513)
Q Consensus 442 D-g~v~vwd~~~~-----~~~~~~~~~~~~v~~v~~~p~~~~~~t~ 481 (513)
+ ..+++.++..+ +.........+....+....+..++.|.
T Consensus 250 ~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn 295 (414)
T PF02897_consen 250 SESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTN 295 (414)
T ss_dssp SEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-
T ss_pred cCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeC
Confidence 2 45788888875 3333333333334445444333444444
No 363
>PHA02713 hypothetical protein; Provisional
Probab=94.84 E-value=0.85 Score=48.12 Aligned_cols=70 Identities=7% Similarity=0.089 Sum_probs=41.9
Q ss_pred CCCEEEEEecC------CeEEEEecCC-CCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCC--cEEEEeCCCCeEE
Q 037288 386 YDQYFLASSMD------GTVKLYDHRL-TTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDC--KLRIWSIRSGELV 456 (513)
Q Consensus 386 ~~~~l~s~s~d------g~i~lwd~~~-~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg--~v~vwd~~~~~~~ 456 (513)
+++..+.|+.+ ..+..||... .....+..+......... +. -+|++.+.||.|| ++-.||..+.+-.
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~--~~--~~~~iyv~Gg~~~~~~~e~yd~~~~~W~ 538 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHT--IL--HDNTIMMLHCYESYMLQDTFNVYTYEWN 538 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccccee--EE--ECCEEEEEeeecceeehhhcCccccccc
Confidence 57777777754 2467899873 233344444332222111 22 2588889999988 7788888777654
Q ss_pred EEe
Q 037288 457 FED 459 (513)
Q Consensus 457 ~~~ 459 (513)
...
T Consensus 539 ~~~ 541 (557)
T PHA02713 539 HIC 541 (557)
T ss_pred chh
Confidence 443
No 364
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=94.69 E-value=5.2 Score=39.97 Aligned_cols=180 Identities=9% Similarity=0.001 Sum_probs=110.3
Q ss_pred cEEEEEEcCCCCEEEEE-e---CCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEe-CCCeEEEEECCCCcccc
Q 037288 258 TVWTADFCTNPSQAVIG-T---NLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGF-RNGAIVTVDVRKRQRGC 332 (513)
Q Consensus 258 ~V~~~~~s~~g~~l~s~-s---~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~-~dg~i~iwd~~~~~~~~ 332 (513)
.-..+++++++..+..+ . ++.+.+.|..++..+....-...-..+++.|+|+.++... .++.|.+.|.......
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~- 195 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVV- 195 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCccee-
Confidence 55688999998766544 3 3558888999888777644322228999999998665554 7899999996655421
Q ss_pred ccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecC---CeEEEEecCCCCc
Q 037288 333 SSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMD---GTVKLYDHRLTTR 409 (513)
Q Consensus 333 ~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~d---g~i~lwd~~~~~~ 409 (513)
. .+.... . .....-+...+++++.++.+.... +.+...|.. ..
T Consensus 196 ---~--~~~~~~--------------------------~-~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~--~~ 241 (381)
T COG3391 196 ---R--GSVGSL--------------------------V-GVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTA--TG 241 (381)
T ss_pred ---c--cccccc--------------------------c-ccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCC--Cc
Confidence 0 000000 0 000111124677888866655544 588888885 32
Q ss_pred cceEE-ecCCCCceeEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCeEEEEecCCC---CCeEEEEEcCC
Q 037288 410 GAVQS-YEGHVNSHTRIQLGVDQSERFVMSGG-EDCKLRIWSIRSGELVFEDKFSN---SVPSAVCWRTQ 474 (513)
Q Consensus 410 ~~~~~-~~~h~~~v~~~~~~~s~~g~~l~sg~-~Dg~v~vwd~~~~~~~~~~~~~~---~~v~~v~~~p~ 474 (513)
..... +..-... ...+.++|+|+++.+.. ..+.+.+-|..+........... ..+..+++.+.
T Consensus 242 ~v~~~~~~~~~~~--~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 242 NVTATDLPVGSGA--PRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred eEEEeccccccCC--CCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence 22222 1211111 12367899999988874 45889999999988877654322 23556666554
No 365
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=94.68 E-value=8.1 Score=42.13 Aligned_cols=184 Identities=16% Similarity=0.135 Sum_probs=96.9
Q ss_pred CCCEEEEEeCCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEE
Q 037288 267 NPSQAVIGTNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSR 346 (513)
Q Consensus 267 ~g~~l~s~s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~ 346 (513)
.++.|+-...+.|++++-. + ..........++....+.+...++.++.++.+...++..... . ...-..-...|.|
T Consensus 460 ~g~~lvQvTs~~iRl~ss~-~-~~~~W~~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l-~-e~~~~~~e~evaC 535 (1096)
T KOG1897|consen 460 NGNQLVQVTSNSIRLVSSA-G-LRSEWRPPGKITIGVVSANASQVVVAGGGLALFYLEIEDGGL-R-EVSHKEFEYEVAC 535 (1096)
T ss_pred CCceEEEEecccEEEEcch-h-hhhcccCCCceEEEEEeecceEEEEecCccEEEEEEeeccce-e-eeeeheecceeEE
Confidence 4445555555667777655 1 222233445555555555555666666777777777765541 1 1122233678999
Q ss_pred EeeCC---------eEEEeEeecccCccc--ceeEe------e---cCCCceEEEEEcCCCCEEEEEecCCeEEEEecCC
Q 037288 347 LQRND---------RVTNEQWFELKANIW--PSHTT------F---MPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRL 406 (513)
Q Consensus 347 v~~~~---------~~~s~~w~~~~~~~~--~~~~~------~---~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~ 406 (513)
++++| .++.|.|+.....+. |.... . .|.++.- ..+-.+..+|+++..||.+.-|-+..
T Consensus 536 LDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~-~~~e~d~~yLlvalgdG~l~~fv~d~ 614 (1096)
T KOG1897|consen 536 LDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILL-TTFEGDIHYLLVALGDGALLYFVLDI 614 (1096)
T ss_pred EecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheee-EEeeccceEEEEEcCCceEEEEEEEc
Confidence 99987 455666875433221 11111 0 1112222 23444578999999999998877652
Q ss_pred CCcc--ceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEE
Q 037288 407 TTRG--AVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFE 458 (513)
Q Consensus 407 ~~~~--~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~ 458 (513)
.... ..+.-.-...++.- -.|+..++.-+-+..|+-..+|. .+++++.+
T Consensus 615 ~tg~lsd~Kk~~lGt~P~~L--r~f~sk~~t~vfa~sdrP~viY~-~n~kLv~s 665 (1096)
T KOG1897|consen 615 NTGQLSDRKKVTLGTQPISL--RTFSSKSRTAVFALSDRPTVIYS-SNGKLVYS 665 (1096)
T ss_pred ccceEccccccccCCCCcEE--EEEeeCCceEEEEeCCCCEEEEe-cCCcEEEe
Confidence 2211 11111112334433 34555444444445577777777 35565554
No 366
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=94.67 E-value=6.6 Score=41.10 Aligned_cols=54 Identities=19% Similarity=0.260 Sum_probs=39.1
Q ss_pred eEEEEECCCCcEEEEeee-CCCe---------EEEEEecCCc---EEEEEeCCCeEEEEECCCCccc
Q 037288 278 GAAMVDMETGMASWVCRS-KSDI---------LAQQVIHSGN---VVLCGFRNGAIVTVDVRKRQRG 331 (513)
Q Consensus 278 ~i~vwd~~~~~~~~~~~~-~~~V---------~~l~~~~~~~---~l~sg~~dg~i~iwd~~~~~~~ 331 (513)
.|...|++||+..+.++. +.++ .-+....+|. .++.+.++|.+++.|.++++.+
T Consensus 272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 477789999999988872 1111 2222324665 8889999999999999998763
No 367
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=94.66 E-value=5.6 Score=40.22 Aligned_cols=213 Identities=9% Similarity=0.038 Sum_probs=100.8
Q ss_pred cEEEEEEcCCCCEEEEE-e---CC--eEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCC-----------eE
Q 037288 258 TVWTADFCTNPSQAVIG-T---NL--GAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNG-----------AI 320 (513)
Q Consensus 258 ~V~~~~~s~~g~~l~s~-s---~~--~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg-----------~i 320 (513)
.+....++|+|+++|.+ + ++ .++++|+.+|+.+.-.-.......+.|.+++..|+....+. .|
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 44578899999999865 2 22 28999999997554221111223499999987665554332 47
Q ss_pred EEEECCCCccccccccccccCcC--eEEEeeCC---eEE-EeE--------eecccCc-----ccceeEeecCCCceEEE
Q 037288 321 VTVDVRKRQRGCSSRAGRRHRIP--YSRLQRND---RVT-NEQ--------WFELKAN-----IWPSHTTFMPSSISCLQ 381 (513)
Q Consensus 321 ~iwd~~~~~~~~~~~~~~~h~~~--v~~v~~~~---~~~-s~~--------w~~~~~~-----~~~~~~~~~~~~v~~~~ 381 (513)
+.|++.+..... ...+.+.... ...+..++ .++ ... |-+.... ..+.........+...+
T Consensus 205 ~~~~~gt~~~~d-~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v 283 (414)
T PF02897_consen 205 YRHKLGTPQSED-ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV 283 (414)
T ss_dssp EEEETTS-GGG--EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE
T ss_pred EEEECCCChHhC-eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE
Confidence 888887765431 1233333322 45566665 222 111 2222221 11122222223333332
Q ss_pred EEcCCCCEEEEEe---cCCeEEEEecCCCCcc-ceEEecCCCCceeEEEEEEcCCCCEEEE-EeCCC--cEEEEeCCCCe
Q 037288 382 SLQLYDQYFLASS---MDGTVKLYDHRLTTRG-AVQSYEGHVNSHTRIQLGVDQSERFVMS-GGEDC--KLRIWSIRSGE 454 (513)
Q Consensus 382 ~~~~~~~~l~s~s---~dg~i~lwd~~~~~~~-~~~~~~~h~~~v~~~~~~~s~~g~~l~s-g~~Dg--~v~vwd~~~~~ 454 (513)
... ++.+++... .++.|...++...... ....+-.|...+... .+...+++|+. --.++ .|+++++..+.
T Consensus 284 ~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~--~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~ 360 (414)
T PF02897_consen 284 DHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLE--DVSLFKDYLVLSYRENGSSRLRVYDLDDGK 360 (414)
T ss_dssp EEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEE--EEEEETTEEEEEEEETTEEEEEEEETT-TE
T ss_pred Ecc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEE--EEEEECCEEEEEEEECCccEEEEEECCCCc
Confidence 222 333444332 2456666677532221 122455565544442 33334555544 44444 58889988444
Q ss_pred EEEEecC-CCCCeEEEEEcCC
Q 037288 455 LVFEDKF-SNSVPSAVCWRTQ 474 (513)
Q Consensus 455 ~~~~~~~-~~~~v~~v~~~p~ 474 (513)
....+.. ..+.|..+...++
T Consensus 361 ~~~~~~~p~~g~v~~~~~~~~ 381 (414)
T PF02897_consen 361 ESREIPLPEAGSVSGVSGDFD 381 (414)
T ss_dssp EEEEEESSSSSEEEEEES-TT
T ss_pred EEeeecCCcceEEeccCCCCC
Confidence 4444332 2333555554444
No 368
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=94.66 E-value=4.9 Score=39.52 Aligned_cols=215 Identities=8% Similarity=-0.044 Sum_probs=94.6
Q ss_pred EEcCCCCEEEEEeC--C--eEEEEECCCCcEEEEeeeCCC-eEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccc
Q 037288 263 DFCTNPSQAVIGTN--L--GAAMVDMETGMASWVCRSKSD-ILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAG 337 (513)
Q Consensus 263 ~~s~~g~~l~s~s~--~--~i~vwd~~~~~~~~~~~~~~~-V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~ 337 (513)
+|.++|+.|+.+++ + .+.+.|+.+++...+...... .....++++.+.++--..+..|+-.|+.+.+... + +
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~-v--y 118 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERV-V--Y 118 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEE-E--E
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEE-E--E
Confidence 45778987776553 2 388899999998887775433 3345567887766555455688889999887543 2 2
Q ss_pred cccCcCeEEEeeC---C-eEEEeE------e------------------------ecccCcccceeEeecCCCceEEEEE
Q 037288 338 RRHRIPYSRLQRN---D-RVTNEQ------W------------------------FELKANIWPSHTTFMPSSISCLQSL 383 (513)
Q Consensus 338 ~~h~~~v~~v~~~---~-~~~s~~------w------------------------~~~~~~~~~~~~~~~~~~v~~~~~~ 383 (513)
......+-...|. . ..+.+. | ++..++.. ..+....-+..+...
T Consensus 119 ~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~--~v~~~~~wlgH~~fs 196 (386)
T PF14583_consen 119 EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERK--VVFEDTDWLGHVQFS 196 (386)
T ss_dssp E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EE--EEEEESS-EEEEEEE
T ss_pred ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCcee--EEEecCccccCcccC
Confidence 2222323222331 1 223222 1 11111110 011111122333333
Q ss_pred cCCCCEEEEEec---CC-eEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEE-----eCCCcEEEEeCCCCe
Q 037288 384 QLYDQYFLASSM---DG-TVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSG-----GEDCKLRIWSIRSGE 454 (513)
Q Consensus 384 ~~~~~~l~s~s~---dg-~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg-----~~Dg~v~vwd~~~~~ 454 (513)
+.+...|+-|-. +. .-+||-++. .......+..|.....+-.=-|.|||..|.-- +.+..|.-+|+.+++
T Consensus 197 P~dp~li~fCHEGpw~~Vd~RiW~i~~-dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~ 275 (386)
T PF14583_consen 197 PTDPTLIMFCHEGPWDLVDQRIWTINT-DGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGE 275 (386)
T ss_dssp TTEEEEEEEEE-S-TTTSS-SEEEEET-TS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--
T ss_pred CCCCCEEEEeccCCcceeceEEEEEEc-CCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCC
Confidence 334445554432 22 136776652 22244444444433322224578999876542 235567778888886
Q ss_pred EEEEecCCCCCeEEEEEcCCCceEEeeCCCe
Q 037288 455 LVFEDKFSNSVPSAVCWRTQRSMGPQIEGKI 485 (513)
Q Consensus 455 ~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~ 485 (513)
....... .+...+--++++.+++..++|-
T Consensus 276 ~~~~~~~--p~~~H~~ss~Dg~L~vGDG~d~ 304 (386)
T PF14583_consen 276 RRRLMEM--PWCSHFMSSPDGKLFVGDGGDA 304 (386)
T ss_dssp EEEEEEE---SEEEEEE-TTSSEEEEEE---
T ss_pred ceEEEeC--CceeeeEEcCCCCEEEecCCCC
Confidence 5433222 2455667778899999988863
No 369
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=94.65 E-value=4.5 Score=39.02 Aligned_cols=192 Identities=12% Similarity=0.095 Sum_probs=95.3
Q ss_pred EEEEcCCCCEEEEEe---CCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCcccc-cc-c
Q 037288 261 TADFCTNPSQAVIGT---NLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGC-SS-R 335 (513)
Q Consensus 261 ~~~~s~~g~~l~s~s---~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~-~~-~ 335 (513)
..+++.|++++.... ...|.|.|+..++.+..+...+...-.-..+ .-+.+-|.||.+.-..+....... .. .
T Consensus 99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~--~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~ 176 (342)
T PF06433_consen 99 MFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGN--RGFSMLCGDGSLLTVTLDADGKEAQKSTK 176 (342)
T ss_dssp GEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEET--TEEEEEETTSCEEEEEETSTSSEEEEEEE
T ss_pred ceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCC--CceEEEecCCceEEEEECCCCCEeEeecc
Confidence 457788998877652 2348899999998877776555333222222 346777788888888876332211 00 0
Q ss_pred ccc----------------------ccCcCeEEEeeCC--eEEEeEeecccCcccceeEeecCCCceEEEEEcCCC-CEE
Q 037288 336 AGR----------------------RHRIPYSRLQRND--RVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYD-QYF 390 (513)
Q Consensus 336 ~~~----------------------~h~~~v~~v~~~~--~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l 390 (513)
.+. ...+.|..++++. --+...|.+...... ..-..++...-+ ++++.. +++
T Consensus 177 ~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~--~~~WrPGG~Q~~-A~~~~~~rly 253 (342)
T PF06433_consen 177 VFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEK--ADGWRPGGWQLI-AYHAASGRLY 253 (342)
T ss_dssp ESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHH--HTTEEE-SSS-E-EEETTTTEEE
T ss_pred ccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCcccc--ccCcCCcceeee-eeccccCeEE
Confidence 011 1122333333333 111222543221100 001112222222 444333 333
Q ss_pred EEEe-------cCCe--EEEEecCCCCccceEEecCCCCceeEEEEEEcCCCC-EEEEE-eCCCcEEEEeCCCCeEEEEe
Q 037288 391 LASS-------MDGT--VKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSER-FVMSG-GEDCKLRIWSIRSGELVFED 459 (513)
Q Consensus 391 ~s~s-------~dg~--i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~-~l~sg-~~Dg~v~vwd~~~~~~~~~~ 459 (513)
+... .|+. |-++|+. ..+.+..+.. ...+.. +.++.+.+ +|++. ..++.+.+||..+|+++.++
T Consensus 254 vLMh~g~~gsHKdpgteVWv~D~~--t~krv~Ri~l-~~~~~S--i~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~ 328 (342)
T PF06433_consen 254 VLMHQGGEGSHKDPGTEVWVYDLK--THKRVARIPL-EHPIDS--IAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSI 328 (342)
T ss_dssp EEEEE--TT-TTS-EEEEEEEETT--TTEEEEEEEE-EEEESE--EEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred EEecCCCCCCccCCceEEEEEECC--CCeEEEEEeC-CCccce--EEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence 3221 1222 5555664 4456666652 122334 77778765 55544 45899999999999999997
Q ss_pred cCC
Q 037288 460 KFS 462 (513)
Q Consensus 460 ~~~ 462 (513)
..-
T Consensus 329 ~~l 331 (342)
T PF06433_consen 329 EQL 331 (342)
T ss_dssp ---
T ss_pred hcc
Confidence 653
No 370
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.52 E-value=3.5 Score=37.21 Aligned_cols=104 Identities=12% Similarity=0.188 Sum_probs=71.4
Q ss_pred EEEcCCCCEE-EEEecCCeEEEEecCCCCcc-----ceEEecC-----CCCceeEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 037288 381 QSLQLYDQYF-LASSMDGTVKLYDHRLTTRG-----AVQSYEG-----HVNSHTRIQLGVDQSERFVMSGGEDCKLRIWS 449 (513)
Q Consensus 381 ~~~~~~~~~l-~s~s~dg~i~lwd~~~~~~~-----~~~~~~~-----h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd 449 (513)
..|+.+.+.| .+-+.+-.|.-||....... .+..++. |..+ -. ++++.+|++.++.-..++|.-.|
T Consensus 163 l~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~P-DG--m~ID~eG~L~Va~~ng~~V~~~d 239 (310)
T KOG4499|consen 163 LAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEP-DG--MTIDTEGNLYVATFNGGTVQKVD 239 (310)
T ss_pred ccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCC-Cc--ceEccCCcEEEEEecCcEEEEEC
Confidence 3455555544 45566777877884321111 2222221 1111 12 45567888888888889999999
Q ss_pred CCCCeEEEEecCCCCCeEEEEEcCC--CceEEeeCCCeee
Q 037288 450 IRSGELVFEDKFSNSVPSAVCWRTQ--RSMGPQIEGKIHE 487 (513)
Q Consensus 450 ~~~~~~~~~~~~~~~~v~~v~~~p~--~~~~~t~~~~~~~ 487 (513)
..+|+.+.+++.....++++||.-. ..+++|+..++..
T Consensus 240 p~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~aa~~~d 279 (310)
T KOG4499|consen 240 PTTGKILLEIKLPTPQITSCCFGGKNLDILYVTTAAKFDD 279 (310)
T ss_pred CCCCcEEEEEEcCCCceEEEEecCCCccEEEEEehhcccC
Confidence 9999999999888888999999866 7889999888773
No 371
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=94.44 E-value=2.8 Score=43.47 Aligned_cols=65 Identities=15% Similarity=0.211 Sum_probs=44.0
Q ss_pred CCCEEEEEeCCeEEEEECCCCcEEEEeeeCCC-------eE--EEEEecCCcEEEEEeCCCeEEEEECCCCcccc
Q 037288 267 NPSQAVIGTNLGAAMVDMETGMASWVCRSKSD-------IL--AQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGC 332 (513)
Q Consensus 267 ~g~~l~s~s~~~i~vwd~~~~~~~~~~~~~~~-------V~--~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~ 332 (513)
++.+++...++.+...|..+|+.++.+..... +. .+... ++..++.++.+|.|..+|.++++..-
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W 134 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVW 134 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEee
Confidence 55555555677788899999998887763322 11 11111 22677888899999999999887653
No 372
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=94.40 E-value=4 Score=43.10 Aligned_cols=184 Identities=14% Similarity=0.123 Sum_probs=98.7
Q ss_pred CCCEEEEEe-C------CeEEEEECCCCcEEEEee--eCCCeEEEEEecCCcEEEEEeCC------CeEEEEECCCCccc
Q 037288 267 NPSQAVIGT-N------LGAAMVDMETGMASWVCR--SKSDILAQQVIHSGNVVLCGFRN------GAIVTVDVRKRQRG 331 (513)
Q Consensus 267 ~g~~l~s~s-~------~~i~vwd~~~~~~~~~~~--~~~~V~~l~~~~~~~~l~sg~~d------g~i~iwd~~~~~~~ 331 (513)
.+.+++.|+ . +.+..+|..++.-..... ....-.++++. ++.+.++||.| .++..||.+..+..
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~ 362 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT 362 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCcee
Confidence 455556554 2 237788988875333322 33334455544 56889999998 47788999888765
Q ss_pred cccccccccCcCeEEEeeCC-eEEEeE------------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCC-
Q 037288 332 CSSRAGRRHRIPYSRLQRND-RVTNEQ------------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDG- 397 (513)
Q Consensus 332 ~~~~~~~~h~~~v~~v~~~~-~~~s~~------------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg- 397 (513)
. +..+...+.......... .++.|+ ||....+......... .........-+|...++|+.++
T Consensus 363 ~-~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~--~r~~~gv~~~~g~iYi~GG~~~~ 439 (571)
T KOG4441|consen 363 P-VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT--RRSGHGVAVLGGKLYIIGGGDGS 439 (571)
T ss_pred c-cCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCc--ceeeeEEEEECCEEEEEcCcCCC
Confidence 4 444544444444444443 444454 3333332221111111 1111122223688888888554
Q ss_pred -----eEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCc-----EEEEeCCCCeEEEE
Q 037288 398 -----TVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCK-----LRIWSIRSGELVFE 458 (513)
Q Consensus 398 -----~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~-----v~vwd~~~~~~~~~ 458 (513)
++..||........+..+..-..... ++ .-++.+.+.||.|+. |..||..+.+....
T Consensus 440 ~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g---~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v 506 (571)
T KOG4441|consen 440 SNCLNSVECYDPETNTWTLIAPMNTRRSGFG---VA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMV 506 (571)
T ss_pred ccccceEEEEcCCCCceeecCCcccccccce---EE-EECCEEEEECCccCCCccceEEEEcCCCCceeEc
Confidence 46678876444333333332222111 11 135778888888873 77788887665444
No 373
>PRK13616 lipoprotein LpqB; Provisional
Probab=94.40 E-value=4 Score=43.22 Aligned_cols=195 Identities=13% Similarity=0.068 Sum_probs=95.9
Q ss_pred CcEEEEEEcCCCCEEEEEe-------CCe--EEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCC-CeEEEEECC
Q 037288 257 CTVWTADFCTNPSQAVIGT-------NLG--AAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRN-GAIVTVDVR 326 (513)
Q Consensus 257 ~~V~~~~~s~~g~~l~s~s-------~~~--i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~d-g~i~iwd~~ 326 (513)
..+...+++|+|+.++... +.. +.+++.. +........ ...+.-.|+|||..|++.... ..+++.+-.
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g-~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~ 427 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEG-HSLTRPSWSLDADAVWVVVDGNTVVRVIRDP 427 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecC-CCCCCceECCCCCceEEEecCcceEEEeccC
Confidence 3577889999999887554 322 5555653 222222222 238888999998877666432 222222221
Q ss_pred CCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCC
Q 037288 327 KRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRL 406 (513)
Q Consensus 327 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~ 406 (513)
...... +..+. .+.. .. .....|..+ .+++||..++... ++.|.+--+..
T Consensus 428 ~~gql~-~~~vd-----------------------~ge~---~~-~~~g~Issl-~wSpDG~RiA~i~-~g~v~Va~Vvr 477 (591)
T PRK13616 428 ATGQLA-RTPVD-----------------------ASAV---AS-RVPGPISEL-QLSRDGVRAAMII-GGKVYLAVVEQ 477 (591)
T ss_pred CCceEE-EEecc-----------------------Cchh---hh-ccCCCcCeE-EECCCCCEEEEEE-CCEEEEEEEEe
Confidence 110000 00000 0000 00 112234443 6788999887765 56776632211
Q ss_pred CCccc--e---EEec-CCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CeEEEEecC--CCCCeEEEEEcCCCce
Q 037288 407 TTRGA--V---QSYE-GHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRS-GELVFEDKF--SNSVPSAVCWRTQRSM 477 (513)
Q Consensus 407 ~~~~~--~---~~~~-~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~-~~~~~~~~~--~~~~v~~v~~~p~~~~ 477 (513)
...+. + ..+. +-...+ ..+.|..++.++ .+..++...+|.+.- |.....+.. ...++.+|+=++. .+
T Consensus 478 ~~~G~~~l~~~~~l~~~l~~~~--~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~-~i 553 (591)
T PRK13616 478 TEDGQYALTNPREVGPGLGDTA--VSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS-TV 553 (591)
T ss_pred CCCCceeecccEEeecccCCcc--ccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc-eE
Confidence 12222 1 1121 122222 337898888854 555555555554432 222222222 2456778887774 56
Q ss_pred EEeeCCCeee
Q 037288 478 GPQIEGKIHE 487 (513)
Q Consensus 478 ~~t~~~~~~~ 487 (513)
+++..+...+
T Consensus 554 yv~~~~g~~~ 563 (591)
T PRK13616 554 YVTDARAVLQ 563 (591)
T ss_pred EEEcCCceEE
Confidence 6666666554
No 374
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.17 E-value=0.58 Score=46.91 Aligned_cols=94 Identities=11% Similarity=0.067 Sum_probs=60.3
Q ss_pred EEEecCCeEEEEecCCCCccceEEecCCC--CceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEE-ecCCCCCeE
Q 037288 391 LASSMDGTVKLYDHRLTTRGAVQSYEGHV--NSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFE-DKFSNSVPS 467 (513)
Q Consensus 391 ~s~s~dg~i~lwd~~~~~~~~~~~~~~h~--~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~-~~~~~~~v~ 467 (513)
+.|-.|..|.-||.|......+..-++|. .....-+++-..+ .+|++||.+|.|++||- .+....+ +.+-+.+|.
T Consensus 398 lvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~ 475 (644)
T KOG2395|consen 398 LVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTES-GYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIK 475 (644)
T ss_pred EEeecCCceEEecccccCcceeeeeeccccccccccceeeecCC-ceEEEeecCCcEEeehh-hhhhhhhcccccCCcee
Confidence 44667889999999853332333333332 1111112333334 48999999999999996 5554444 667788999
Q ss_pred EEEEcCCC-ceEEeeCCCee
Q 037288 468 AVCWRTQR-SMGPQIEGKIH 486 (513)
Q Consensus 468 ~v~~~p~~-~~~~t~~~~~~ 486 (513)
.|..+.++ .+++|+..-+-
T Consensus 476 hVdvtadGKwil~Tc~tyLl 495 (644)
T KOG2395|consen 476 HVDVTADGKWILATCKTYLL 495 (644)
T ss_pred eEEeeccCcEEEEecccEEE
Confidence 99999885 56666665443
No 375
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.06 E-value=0.19 Score=33.02 Aligned_cols=34 Identities=9% Similarity=0.184 Sum_probs=28.4
Q ss_pred CceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE
Q 037288 420 NSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELV 456 (513)
Q Consensus 420 ~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~ 456 (513)
..|.. ++|+|...+||.|..||.|.++.+ +++.+
T Consensus 12 ~~v~~--~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 12 SRVSC--MSWCPTMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CcEEE--EEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence 34554 899999999999999999999998 66543
No 376
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=94.01 E-value=1.4 Score=44.03 Aligned_cols=59 Identities=17% Similarity=0.254 Sum_probs=38.6
Q ss_pred ceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEe--cC------CCCCeEEEEEc
Q 037288 411 AVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFED--KF------SNSVPSAVCWR 472 (513)
Q Consensus 411 ~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~--~~------~~~~v~~v~~~ 472 (513)
+..-++...++|+. ++.| |=.+++.|.++|.+.|.|++....++.- .. ....++++.|.
T Consensus 78 P~~l~~~~~g~vta--l~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~ 144 (395)
T PF08596_consen 78 PLTLLDAKQGPVTA--LKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFS 144 (395)
T ss_dssp EEEEE---S-SEEE--EEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEE
T ss_pred chhheeccCCcEeE--EecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEE
Confidence 44455666788877 5554 5569999999999999999999988873 22 23457777776
No 377
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=93.89 E-value=2.3 Score=44.97 Aligned_cols=186 Identities=12% Similarity=0.014 Sum_probs=94.8
Q ss_pred EEEEcCCCCEEEEEeCC-------eEEEEECCCCcEEEEeeeCCC--eEEEEEecCCcEEEEEeCCC-----eEEEEECC
Q 037288 261 TADFCTNPSQAVIGTNL-------GAAMVDMETGMASWVCRSKSD--ILAQQVIHSGNVVLCGFRNG-----AIVTVDVR 326 (513)
Q Consensus 261 ~~~~s~~g~~l~s~s~~-------~i~vwd~~~~~~~~~~~~~~~--V~~l~~~~~~~~l~sg~~dg-----~i~iwd~~ 326 (513)
+++.. ++.+.++|+.+ .+-.||..+++=...-.-... -.+++ .-+|.+.++||.|| +|-.||..
T Consensus 327 ~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~-~l~g~iYavGG~dg~~~l~svE~YDp~ 404 (571)
T KOG4441|consen 327 GVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVA-VLDGKLYAVGGFDGEKSLNSVECYDPV 404 (571)
T ss_pred cEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeE-EECCEEEEEeccccccccccEEEecCC
Confidence 34443 44555666433 266778877762211111111 11222 12688999999985 47789988
Q ss_pred CCccccccccccccCcCeEEEeeCC-eEEEeEeecccC-------------cccceeEeecCCCceEEEEEcCCCCEEEE
Q 037288 327 KRQRGCSSRAGRRHRIPYSRLQRND-RVTNEQWFELKA-------------NIWPSHTTFMPSSISCLQSLQLYDQYFLA 392 (513)
Q Consensus 327 ~~~~~~~~~~~~~h~~~v~~v~~~~-~~~s~~w~~~~~-------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 392 (513)
+.+... +..+.........+.+.. .++.|+|+.... ................+.. -++..++.
T Consensus 405 ~~~W~~-va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~--~~~~iYvv 481 (571)
T KOG4441|consen 405 TNKWTP-VAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV--LNGKIYVV 481 (571)
T ss_pred CCcccc-cCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEE--ECCEEEEE
Confidence 887654 333333333444444444 444555444332 2111111111111122222 26788888
Q ss_pred EecCCe-----EEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCC-----cEEEEeCCCCeE
Q 037288 393 SSMDGT-----VKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDC-----KLRIWSIRSGEL 455 (513)
Q Consensus 393 ~s~dg~-----i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg-----~v~vwd~~~~~~ 455 (513)
|+.|+. |..||....+...+..+......+.+ .. -++...+.|+.|| +|..||..+.+-
T Consensus 482 GG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~--~~--~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W 550 (571)
T KOG4441|consen 482 GGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGV--VV--LGGKLYAVGGFDGNNNLNTVECYDPETDTW 550 (571)
T ss_pred CCccCCCccceEEEEcCCCCceeEcccCccccccccE--EE--ECCEEEEEecccCccccceeEEcCCCCCce
Confidence 887763 77788874333344334333333222 11 2467778888886 466777666553
No 378
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=93.88 E-value=7.1 Score=40.52 Aligned_cols=31 Identities=16% Similarity=0.377 Sum_probs=27.2
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEecCC
Q 037288 432 SERFVMSGGEDCKLRIWSIRSGELVFEDKFS 462 (513)
Q Consensus 432 ~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~ 462 (513)
.+..|+.++.||.|+.+|..+|+.+-+.+..
T Consensus 405 ~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~ 435 (488)
T cd00216 405 AGNLVFAGAADGYFRAFDATTGKELWKFRTP 435 (488)
T ss_pred cCCeEEEECCCCeEEEEECCCCceeeEEECC
Confidence 4678999999999999999999999887653
No 379
>PHA02713 hypothetical protein; Provisional
Probab=93.56 E-value=7.1 Score=41.25 Aligned_cols=197 Identities=8% Similarity=-0.018 Sum_probs=89.4
Q ss_pred eEEEEECCCCcEEEEeeeCCC--eEEEEEecCCcEEEEEeCC------CeEEEEECCCCccccccccccccCcCeEEEee
Q 037288 278 GAAMVDMETGMASWVCRSKSD--ILAQQVIHSGNVVLCGFRN------GAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQR 349 (513)
Q Consensus 278 ~i~vwd~~~~~~~~~~~~~~~--V~~l~~~~~~~~l~sg~~d------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~ 349 (513)
.+..||..+++-...-.-..+ -.+++. -++.+++.||.+ ..+..||+++..... +..+.........+..
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~-~~~m~~~R~~~~~~~~ 350 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVE-LPPMIKNRCRFSLAVI 350 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEee-CCCCcchhhceeEEEE
Confidence 356788877653222111111 122222 367788888754 357889988775433 3333333333333333
Q ss_pred CC-eEEEeE------------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCC-------------------
Q 037288 350 ND-RVTNEQ------------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDG------------------- 397 (513)
Q Consensus 350 ~~-~~~s~~------------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg------------------- 397 (513)
.. .++.|+ |+...........+..+..-.+.+. -++...+.|+.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~ 428 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT 428 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccc
Confidence 33 333333 2322222111111111111112222 2677788887653
Q ss_pred ----eEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCC------cEEEEeCCC-Ce--EEEEecCCCC
Q 037288 398 ----TVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDC------KLRIWSIRS-GE--LVFEDKFSNS 464 (513)
Q Consensus 398 ----~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg------~v~vwd~~~-~~--~~~~~~~~~~ 464 (513)
.+..||........+..+....... . ++ .-+|++.+.||.++ .+..||..+ .+ .+..+.....
T Consensus 429 ~~~~~ve~YDP~td~W~~v~~m~~~r~~~-~--~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~ 504 (557)
T PHA02713 429 HSSNKVIRYDTVNNIWETLPNFWTGTIRP-G--VV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS 504 (557)
T ss_pred cccceEEEECCCCCeEeecCCCCcccccC-c--EE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc
Confidence 4677887633333333332111111 1 11 23467777777642 467899886 44 3333433322
Q ss_pred CeEEEEEcCCCceEEeeCCC
Q 037288 465 VPSAVCWRTQRSMGPQIEGK 484 (513)
Q Consensus 465 ~v~~v~~~p~~~~~~t~~~~ 484 (513)
....++. ++.+++.++.+
T Consensus 505 ~~~~~~~--~~~iyv~Gg~~ 522 (557)
T PHA02713 505 ALHTILH--DNTIMMLHCYE 522 (557)
T ss_pred cceeEEE--CCEEEEEeeec
Confidence 2333333 44555555533
No 380
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.44 E-value=1.9 Score=43.27 Aligned_cols=146 Identities=16% Similarity=0.170 Sum_probs=87.4
Q ss_pred CCCEEEEEe--CCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCc-------EEEEEeCCCeEEEEECCCCccccccccc
Q 037288 267 NPSQAVIGT--NLGAAMVDMETGMASWVCRSKSDILAQQVIHSGN-------VVLCGFRNGAIVTVDVRKRQRGCSSRAG 337 (513)
Q Consensus 267 ~g~~l~s~s--~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~-------~l~sg~~dg~i~iwd~~~~~~~~~~~~~ 337 (513)
+..+|..-+ .+.+.-.|++.|+.+.....+..| -++|.|+.. .-++|-.+..|.-.|.|...... ..
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi---~v 553 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKI---KV 553 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCce---ee
Confidence 444555333 234777799999988888877777 778888531 23456567777777877554211 11
Q ss_pred cccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecC
Q 037288 338 RRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEG 417 (513)
Q Consensus 338 ~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~ 417 (513)
......++.-. ..|. ......++|+|+..|.|++||-- ....-..+.+
T Consensus 554 ~esKdY~tKn~----------------------------Fss~--~tTesGyIa~as~kGDirLyDRi--g~rAKtalP~ 601 (776)
T COG5167 554 VESKDYKTKNK----------------------------FSSG--MTTESGYIAAASRKGDIRLYDRI--GKRAKTALPG 601 (776)
T ss_pred eeehhcccccc----------------------------cccc--ccccCceEEEecCCCceeeehhh--cchhhhcCcc
Confidence 11111111111 1111 12345689999999999999952 1112233455
Q ss_pred CCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 037288 418 HVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIR 451 (513)
Q Consensus 418 h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~ 451 (513)
....+.. +.++.+|++|++.|. ..+.+-|+.
T Consensus 602 lG~aIk~--idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 602 LGDAIKH--IDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred cccceee--eEeecCCcEEEEeec-ceEEEEecc
Confidence 5566656 677889999988875 467777764
No 381
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=93.41 E-value=0.24 Score=44.22 Aligned_cols=86 Identities=13% Similarity=0.137 Sum_probs=54.0
Q ss_pred CCCEEEEEecCCeEEEEecCCCCccc-eEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCC-
Q 037288 386 YDQYFLASSMDGTVKLYDHRLTTRGA-VQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSN- 463 (513)
Q Consensus 386 ~~~~l~s~s~dg~i~lwd~~~~~~~~-~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~- 463 (513)
-+.-+++|+.+|.|.+|... ..+. .-.+..-.+.+.+ .+..-.++.+..++++||.|+.|++.-.+.+.....|.
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n--~~g~~~d~~~s~~e~i~~-~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~ 145 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWN--LEGAHSDRVCSGEESIDL-GIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNF 145 (238)
T ss_pred cCceEEeecccceEEEecCC--ccchHHHhhhccccccee-ccccccccceeEEeccCCceeeeccccCceeeeeccccC
Confidence 35668899999999999875 2221 1111111222211 12223355688999999999999999998888777766
Q ss_pred CCeEEEEEcCC
Q 037288 464 SVPSAVCWRTQ 474 (513)
Q Consensus 464 ~~v~~v~~~p~ 474 (513)
.++........
T Consensus 146 ~~~e~~ivv~s 156 (238)
T KOG2444|consen 146 ESGEELIVVGS 156 (238)
T ss_pred CCcceeEEecC
Confidence 44444444433
No 382
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=92.91 E-value=0.24 Score=52.57 Aligned_cols=187 Identities=13% Similarity=0.123 Sum_probs=110.0
Q ss_pred eccccCcEEEEEEcC-CCCEEEEEeCCeEEEEECC--CCcEE-----EEee-eCCC---eEEEEEecCCcEEEEEeCCCe
Q 037288 252 VASFKCTVWTADFCT-NPSQAVIGTNLGAAMVDME--TGMAS-----WVCR-SKSD---ILAQQVIHSGNVVLCGFRNGA 319 (513)
Q Consensus 252 ~~~h~~~V~~~~~s~-~g~~l~s~s~~~i~vwd~~--~~~~~-----~~~~-~~~~---V~~l~~~~~~~~l~sg~~dg~ 319 (513)
+++..+.|-.+.|-. +-..+. ---+.+.|||+. .|+.. .... -..+ |..+.|.++..++..+..+++
T Consensus 128 ~kgf~G~v~dl~fah~~~pk~~-~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~ 206 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFAHTKCPKGR-RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGE 206 (1283)
T ss_pred HhcCCCCcccccccccCChHHH-HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCc
Confidence 667778888888843 111221 001236678764 34321 1111 1223 444444456678888888999
Q ss_pred EEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeE
Q 037288 320 IVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTV 399 (513)
Q Consensus 320 i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i 399 (513)
|++........ .-+.+|...+..++|- ...+.-+..++|||..|+.++.||.+
T Consensus 207 i~lL~~~ra~~----~l~rsHs~~~~d~a~~-----------------------~~g~~~l~~lSpDGtv~a~a~~dG~v 259 (1283)
T KOG1916|consen 207 IRLLNINRALR----SLFRSHSQRVTDMAFF-----------------------AEGVLKLASLSPDGTVFAWAISDGSV 259 (1283)
T ss_pred eeEeeechHHH----HHHHhcCCCcccHHHH-----------------------hhchhhheeeCCCCcEEEEeecCCcc
Confidence 99887765432 2455688888776651 22333345689999999999999999
Q ss_pred EEEecCCCC---ccceEEecCCCC-ceeEEEEEEcCC-------CC--EEEEEe-CCCcEEEEeCCCCeEEEEecCCCCC
Q 037288 400 KLYDHRLTT---RGAVQSYEGHVN-SHTRIQLGVDQS-------ER--FVMSGG-EDCKLRIWSIRSGELVFEDKFSNSV 465 (513)
Q Consensus 400 ~lwd~~~~~---~~~~~~~~~h~~-~v~~~~~~~s~~-------g~--~l~sg~-~Dg~v~vwd~~~~~~~~~~~~~~~~ 465 (513)
+.|-+.... ..++...+.|.. +-.| +.++.+ +. +++++. .+..+++|.....+++. ...-..
T Consensus 260 ~f~Qiyi~g~~~~rclhewkphd~~p~vC--~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll--~~~~d~ 335 (1283)
T KOG1916|consen 260 GFYQIYITGKIVHRCLHEWKPHDKHPRVC--WLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLL--DKLIDG 335 (1283)
T ss_pred ceeeeeeeccccHhhhhccCCCCCCCcee--eeeccccccCCccceeEEEEecccCCcceeEeeccchhhhh--hhcccc
Confidence 999764211 126777777773 3222 223332 22 344444 35679999998888772 222333
Q ss_pred eEEEE
Q 037288 466 PSAVC 470 (513)
Q Consensus 466 v~~v~ 470 (513)
|..|.
T Consensus 336 v~iV~ 340 (1283)
T KOG1916|consen 336 VQIVG 340 (1283)
T ss_pred eEeec
Confidence 55555
No 383
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=92.89 E-value=11 Score=37.62 Aligned_cols=71 Identities=11% Similarity=-0.056 Sum_probs=38.1
Q ss_pred EEEcCCCCEEEEE-eC------CeEEEEECCCCcEEEEeeeC--CC--eEEEEEecCCcEEEEEeC--------------
Q 037288 262 ADFCTNPSQAVIG-TN------LGAAMVDMETGMASWVCRSK--SD--ILAQQVIHSGNVVLCGFR-------------- 316 (513)
Q Consensus 262 ~~~s~~g~~l~s~-s~------~~i~vwd~~~~~~~~~~~~~--~~--V~~l~~~~~~~~l~sg~~-------------- 316 (513)
+..-|+|+.++++ ++ +++.+.|-++.......... .. -..+-|.|..+++++...
T Consensus 135 ~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d 214 (461)
T PF05694_consen 135 VHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPED 214 (461)
T ss_dssp EEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTT
T ss_pred eeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhH
Confidence 4444789887765 21 34888998887766555422 12 466777888888888743
Q ss_pred ------CCeEEEEECCCCcccc
Q 037288 317 ------NGAIVTVDVRKRQRGC 332 (513)
Q Consensus 317 ------dg~i~iwd~~~~~~~~ 332 (513)
-.++.+||+.+.+...
T Consensus 215 ~~~~~yG~~l~vWD~~~r~~~Q 236 (461)
T PF05694_consen 215 LEAGKYGHSLHVWDWSTRKLLQ 236 (461)
T ss_dssp HHHH-S--EEEEEETTTTEEEE
T ss_pred hhcccccCeEEEEECCCCcEee
Confidence 2789999998887644
No 384
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=92.86 E-value=11 Score=37.33 Aligned_cols=226 Identities=12% Similarity=0.087 Sum_probs=106.2
Q ss_pred cCCCCCccccCcceeeec----ccceEEEecCCCCccccCCCcccceeeeeccccCCCccEEEEecCCCCCCCCCccccc
Q 037288 170 SKAPEHIWRLNKASILMP----SSVSCIKLFGKHPSCATDGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIR 245 (513)
Q Consensus 170 ~~~~~~~w~p~~~~~~~~----s~i~si~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 245 (513)
.....+.|+|++..+.+. +.|..+.+........ ..|.....-....|.....-.+.++++.+..... +..
T Consensus 101 ~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~-~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~----~~~ 175 (353)
T PF00930_consen 101 DRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS-QYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTE----LDP 175 (353)
T ss_dssp SSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE-SS-EEEEEE--BTTS---EEEEEEEESSSTCCCE----E--
T ss_pred ccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc-cCCcccccccCCCCCcCCceEEEEEECCCCcEEE----eee
Confidence 335678899997665552 3344444431111000 1111122222333344444455567776544320 000
Q ss_pred CceeEEeccccCcEEEEEEcCCCC-EEEEEeC-C--e--EEEEECCCCcEEEEee--eCCCe---EEEEEe-cCC-cEEE
Q 037288 246 RSTMHLVASFKCTVWTADFCTNPS-QAVIGTN-L--G--AAMVDMETGMASWVCR--SKSDI---LAQQVI-HSG-NVVL 312 (513)
Q Consensus 246 ~~~~~~~~~h~~~V~~~~~s~~g~-~l~s~s~-~--~--i~vwd~~~~~~~~~~~--~~~~V---~~l~~~-~~~-~~l~ 312 (513)
. ..+..-..-+..+.|.+++. +++.-.+ . . +.+.|..++....... ....| ....|. +++ .+|.
T Consensus 176 ~---~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~ 252 (353)
T PF00930_consen 176 P---NSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLW 252 (353)
T ss_dssp ----HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEE
T ss_pred c---cccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEE
Confidence 0 00122345788999999998 4443332 2 2 6677888876544443 22223 355554 555 5666
Q ss_pred EEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEE-
Q 037288 313 CGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFL- 391 (513)
Q Consensus 313 sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~- 391 (513)
....||.-+++-+...... .+.+....- .|..+..++++++.+.
T Consensus 253 ~s~~~G~~hly~~~~~~~~--~~~lT~G~~---------------------------------~V~~i~~~d~~~~~iyf 297 (353)
T PF00930_consen 253 ISERDGYRHLYLYDLDGGK--PRQLTSGDW---------------------------------EVTSILGWDEDNNRIYF 297 (353)
T ss_dssp EEETTSSEEEEEEETTSSE--EEESS-SSS----------------------------------EEEEEEEECTSSEEEE
T ss_pred EEEcCCCcEEEEEcccccc--eeccccCce---------------------------------eecccceEcCCCCEEEE
Confidence 6667876666644333221 112222222 2334456666666544
Q ss_pred EEecC--CeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEe
Q 037288 392 ASSMD--GTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGG 440 (513)
Q Consensus 392 s~s~d--g~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~ 440 (513)
+|..+ +.-+||-+.....+.+..+....... ..+.|||+|++++-.+
T Consensus 298 ~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~--~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 298 TANGDNPGERHLYRVSLDSGGEPKCLTCEDGDH--YSASFSPDGKYYVDTY 346 (353)
T ss_dssp EESSGGTTSBEEEEEETTETTEEEESSTTSSTT--EEEEE-TTSSEEEEEE
T ss_pred EecCCCCCceEEEEEEeCCCCCeEeccCCCCCc--eEEEECCCCCEEEEEE
Confidence 44442 34455544321144566666444443 3489999999887544
No 385
>PHA03098 kelch-like protein; Provisional
Probab=92.17 E-value=8 Score=40.66 Aligned_cols=181 Identities=8% Similarity=-0.010 Sum_probs=82.1
Q ss_pred CCCEEEEEeC-------CeEEEEECCCCcEEEEeeeC--CCeEEEEEecCCcEEEEEeCC-----CeEEEEECCCCcccc
Q 037288 267 NPSQAVIGTN-------LGAAMVDMETGMASWVCRSK--SDILAQQVIHSGNVVLCGFRN-----GAIVTVDVRKRQRGC 332 (513)
Q Consensus 267 ~g~~l~s~s~-------~~i~vwd~~~~~~~~~~~~~--~~V~~l~~~~~~~~l~sg~~d-----g~i~iwd~~~~~~~~ 332 (513)
++.+++.|+. ..+..||..+++-...-... ..-.++. .-++.+++.||.+ ..+..||..+.+...
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~-~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~ 372 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT-VFNNRIYVIGGIYNSISLNTVESWKPGESKWRE 372 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE-EECCEEEEEeCCCCCEecceEEEEcCCCCceee
Confidence 4555555542 13667888776543221111 1111222 2367888888875 457788988776543
Q ss_pred ccccccccCcCeEEEeeCC-eEEEeE-------------eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCC-
Q 037288 333 SSRAGRRHRIPYSRLQRND-RVTNEQ-------------WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDG- 397 (513)
Q Consensus 333 ~~~~~~~h~~~v~~v~~~~-~~~s~~-------------w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg- 397 (513)
...+.........+.... .++.|+ |+..+...........+....+. ...++..++.|+.++
T Consensus 373 -~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~--~~~~~~iyv~GG~~~~ 449 (534)
T PHA03098 373 -EPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCA--IYHDGKIYVIGGISYI 449 (534)
T ss_pred -CCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceE--EEECCEEEEECCccCC
Confidence 223322222222222333 333333 22222211111111111111122 223566777776432
Q ss_pred -------eEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCeE
Q 037288 398 -------TVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGED-----CKLRIWSIRSGEL 455 (513)
Q Consensus 398 -------~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~D-----g~v~vwd~~~~~~ 455 (513)
.+.+||....+...+..+......... +. .++++++.||.+ ..|.+||..+.+-
T Consensus 450 ~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~--~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 450 DNIKVYNIVESYNPVTNKWTELSSLNFPRINASL--CI--FNNKIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred CCCcccceEEEecCCCCceeeCCCCCcccccceE--EE--ECCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 378888863332222222111111111 22 257777777765 4678888777654
No 386
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=91.70 E-value=0.98 Score=44.46 Aligned_cols=169 Identities=11% Similarity=0.115 Sum_probs=94.2
Q ss_pred eccccCcEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEE--EEee-eCCC----eE-EEEEecCCcEEEEEeCCCeEEEE
Q 037288 252 VASFKCTVWTADFCTNPSQAVIGTNLGAAMVDMETGMAS--WVCR-SKSD----IL-AQQVIHSGNVVLCGFRNGAIVTV 323 (513)
Q Consensus 252 ~~~h~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~--~~~~-~~~~----V~-~l~~~~~~~~l~sg~~dg~i~iw 323 (513)
+..-...|..+-..|||+.+..-+...+.++++.+.... .+.. ..++ |+ ++..-..|.-+.+++.||-|.-|
T Consensus 216 L~~~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQW 295 (733)
T COG4590 216 LSVPFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQW 295 (733)
T ss_pred cCCCccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeee
Confidence 444456788889999999888766677888888765421 1111 1221 22 22222345668888999999887
Q ss_pred -ECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecC-CCceEEEEEcCCCCEEEEEecCCeEEE
Q 037288 324 -DVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMP-SSISCLQSLQLYDQYFLASSMDGTVKL 401 (513)
Q Consensus 324 -d~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~s~dg~i~l 401 (513)
|.+.... + |-.-++ .++.. ..+.- ..-..+.+-|++-+..|++.+
T Consensus 296 Fdvr~~~~-p-------~l~h~R------------------------~f~l~pa~~~~-l~pe~~rkgF~~l~~~G~L~~ 342 (733)
T COG4590 296 FDVRRDGQ-P-------HLNHIR------------------------NFKLAPAEVQF-LLPETNRKGFYSLYRNGTLQS 342 (733)
T ss_pred eeeecCCC-C-------cceeee------------------------ccccCccccee-eccccccceEEEEcCCCceee
Confidence 5554432 1 111111 11111 11111 111223456777778888887
Q ss_pred EecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEe
Q 037288 402 YDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFED 459 (513)
Q Consensus 402 wd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~ 459 (513)
+..- ....+ -++.-...... +++||.+.+|++-. .|.++++.+++..+--++
T Consensus 343 f~st--~~~~l-L~~~~~~~~~~--~~~Sp~~~~Ll~e~-~gki~~~~l~Nr~Peisw 394 (733)
T COG4590 343 FYST--SEKLL-LFERAYQAPQL--VAMSPNQAYLLSED-QGKIRLAQLENRNPEISW 394 (733)
T ss_pred eecc--cCcce-ehhhhhcCcce--eeeCcccchheeec-CCceEEEEecCCCCCccH
Confidence 7653 22221 11111112223 78899999888643 578999998877655443
No 387
>PHA02790 Kelch-like protein; Provisional
Probab=91.69 E-value=8.5 Score=39.84 Aligned_cols=177 Identities=11% Similarity=-0.005 Sum_probs=81.1
Q ss_pred CCCEEEEEeC------CeEEEEECCCCcEEEEee--eCCCeEEEEEecCCcEEEEEeCC--CeEEEEECCCCcccccccc
Q 037288 267 NPSQAVIGTN------LGAAMVDMETGMASWVCR--SKSDILAQQVIHSGNVVLCGFRN--GAIVTVDVRKRQRGCSSRA 336 (513)
Q Consensus 267 ~g~~l~s~s~------~~i~vwd~~~~~~~~~~~--~~~~V~~l~~~~~~~~l~sg~~d--g~i~iwd~~~~~~~~~~~~ 336 (513)
++.++++|+. ..+..||..++.-...-. ....-.++. .-++.+.+.||.+ ..+..||....+... +..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~-~~~ 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVN-MPS 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EECCEEEEECCcCCCCceEEEECCCCeEEE-CCC
Confidence 4555566652 236678887765322221 111112222 2467888888864 357889987665433 334
Q ss_pred ccccCcCeEEEeeCC-eEEEeEe----------ecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecC
Q 037288 337 GRRHRIPYSRLQRND-RVTNEQW----------FELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHR 405 (513)
Q Consensus 337 ~~~h~~~v~~v~~~~-~~~s~~w----------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~ 405 (513)
+.........+.... .++.|+. +..............+..-.+.+. -++...+.|+ .+.+||..
T Consensus 349 l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~--~~~~IYv~GG---~~e~ydp~ 423 (480)
T PHA02790 349 LLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALV--FGRRLFLVGR---NAEFYCES 423 (480)
T ss_pred CCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEE--ECCEEEEECC---ceEEecCC
Confidence 433333333333444 3334432 222221111111111111112222 2566666663 56788886
Q ss_pred CCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCe
Q 037288 406 LTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGED-----CKLRIWSIRSGE 454 (513)
Q Consensus 406 ~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~D-----g~v~vwd~~~~~ 454 (513)
......+..+....... . ++ --+|++.+.||.+ ..|..||..+++
T Consensus 424 ~~~W~~~~~m~~~r~~~-~--~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 424 SNTWTLIDDPIYPRDNP-E--LI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred CCcEeEcCCCCCCcccc-E--EE-EECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 33333333332111111 1 22 1357777888765 346666666554
No 388
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=91.63 E-value=9.7 Score=34.13 Aligned_cols=122 Identities=11% Similarity=0.097 Sum_probs=69.6
Q ss_pred CEEEEEeCCeEEEEECCCC--cEEEEeeeCCCeEEEEEecCCcEEEEEeCC---C---eEEEE-ECCCC--ccccccc-c
Q 037288 269 SQAVIGTNLGAAMVDMETG--MASWVCRSKSDILAQQVIHSGNVVLCGFRN---G---AIVTV-DVRKR--QRGCSSR-A 336 (513)
Q Consensus 269 ~~l~s~s~~~i~vwd~~~~--~~~~~~~~~~~V~~l~~~~~~~~l~sg~~d---g---~i~iw-d~~~~--~~~~~~~-~ 336 (513)
.++++.+...|.+|++.+. +....+..-+.|..+.++..|++|++--.+ . .+++| +.+.. ...+ +. .
T Consensus 30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~-v~vR 108 (215)
T PF14761_consen 30 ALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSP-VRVR 108 (215)
T ss_pred eEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCc-EEEE
Confidence 3444456667999999843 356666777889999999999999987443 2 55665 22222 1111 11 2
Q ss_pred ccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecC
Q 037288 337 GRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHR 405 (513)
Q Consensus 337 ~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~ 405 (513)
+.||...-.. ....+.......+....++.++.+.+-.|++++ |+ ++.+.+|.+.
T Consensus 109 iaG~~v~~~~------------~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlV-g~-~~~l~lf~l~ 163 (215)
T PF14761_consen 109 IAGHRVTPSF------------NESSKDQLEIIELPLSEPPLCIACCPVTGNLLV-GC-GNKLVLFTLK 163 (215)
T ss_pred EcccccccCC------------CCccccceEEEEecCCCCCCEEEecCCCCCEEE-Ec-CCEEEEEEEE
Confidence 3333110000 000000112233445667888877777787655 44 4689999874
No 389
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=91.37 E-value=8.7 Score=40.60 Aligned_cols=65 Identities=11% Similarity=0.039 Sum_probs=45.1
Q ss_pred EEEEcCCCCEEEEEeCC-eEEEEECCCCcEEEEee--eCCCeEEEEEe--cCCcEEEEEeCCCeEEEEEC
Q 037288 261 TADFCTNPSQAVIGTNL-GAAMVDMETGMASWVCR--SKSDILAQQVI--HSGNVVLCGFRNGAIVTVDV 325 (513)
Q Consensus 261 ~~~~s~~g~~l~s~s~~-~i~vwd~~~~~~~~~~~--~~~~V~~l~~~--~~~~~l~sg~~dg~i~iwd~ 325 (513)
-+.-+.-++..++.+++ .+.|||...+....... ..+.|.+++|. |+|+.+++-|....|.++--
T Consensus 34 li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 34 LISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred eEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence 33334444444444444 49999999887444333 47789999997 58888888889999999854
No 390
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=91.33 E-value=4.9 Score=42.43 Aligned_cols=100 Identities=7% Similarity=0.065 Sum_probs=68.5
Q ss_pred CCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCC---------CCeEE
Q 037288 386 YDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIR---------SGELV 456 (513)
Q Consensus 386 ~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~---------~~~~~ 456 (513)
-++.-++-+....+.|||.+......-..| ...+.|..++....|+|+.+++.|....|.++.-. +..++
T Consensus 40 ~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i 118 (631)
T PF12234_consen 40 IKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPI 118 (631)
T ss_pred cCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCccccee
Confidence 444445555566799999862111122333 24566777777778999999999999999999542 22344
Q ss_pred EEe--cCC-CCCeEEEEEcCCCceEEeeCCCee
Q 037288 457 FED--KFS-NSVPSAVCWRTQRSMGPQIEGKIH 486 (513)
Q Consensus 457 ~~~--~~~-~~~v~~v~~~p~~~~~~t~~~~~~ 486 (513)
..+ ..+ ..+|.+.+|.+++.++++++..+.
T Consensus 119 ~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNqlf 151 (631)
T PF12234_consen 119 RKIDISSHTPHPIGDSIWLKDGTLVVGSGNQLF 151 (631)
T ss_pred EEEEeecCCCCCccceeEecCCeEEEEeCCEEE
Confidence 443 223 367999999999999999988877
No 391
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=91.32 E-value=0.75 Score=29.38 Aligned_cols=31 Identities=13% Similarity=0.188 Sum_probs=26.3
Q ss_pred CCeEEEEEecCC---cEEEEEeCCCeEEEEECCC
Q 037288 297 SDILAQQVIHSG---NVVLCGFRNGAIVTVDVRK 327 (513)
Q Consensus 297 ~~V~~l~~~~~~---~~l~sg~~dg~i~iwd~~~ 327 (513)
+.|.+++|+|+. .+|+.+-.-|.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468899999854 5888888889999999995
No 392
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=90.96 E-value=17 Score=35.80 Aligned_cols=166 Identities=8% Similarity=0.023 Sum_probs=75.8
Q ss_pred eEEEEECCCCcEEEEeeeCCCeEEEEEecCC-cEEEEEeC---CC-eEEEEECCCCccccccccccccCcCeEEEeeCCe
Q 037288 278 GAAMVDMETGMASWVCRSKSDILAQQVIHSG-NVVLCGFR---NG-AIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDR 352 (513)
Q Consensus 278 ~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~-~~l~sg~~---dg-~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~ 352 (513)
.|.-.|+.+|+...++.....+.-+.|+|.. .+|+-|-+ +. .-+||-+++.... .+.+..|.
T Consensus 169 ~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~--~~~v~~~~----------- 235 (386)
T PF14583_consen 169 RIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSN--VKKVHRRM----------- 235 (386)
T ss_dssp EEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS-----EESS--------------
T ss_pred eEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCc--ceeeecCC-----------
Confidence 4666799999988888888889999999955 55555432 32 2356655543321 11222221
Q ss_pred EEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEec-----CCeEEEEecCCCCccceEEecCCCCceeEEEE
Q 037288 353 VTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSM-----DGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQL 427 (513)
Q Consensus 353 ~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~-----dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~ 427 (513)
...+..--+|.++|..+..-+. +..|.-+|+.......+.... . +..+
T Consensus 236 ---------------------~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p----~--~~H~ 288 (386)
T PF14583_consen 236 ---------------------EGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMP----W--CSHF 288 (386)
T ss_dssp ---------------------TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-----S--EEEE
T ss_pred ---------------------CCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCC----c--eeee
Confidence 1111222467777776654322 334556666521111222221 1 3336
Q ss_pred EEcCCCCEEEEEeCCC----------------cEEEEeCCCCeEEEEecC---------CCC-CeEEEEEcCCC-ceEEe
Q 037288 428 GVDQSERFVMSGGEDC----------------KLRIWSIRSGELVFEDKF---------SNS-VPSAVCWRTQR-SMGPQ 480 (513)
Q Consensus 428 ~~s~~g~~l~sg~~Dg----------------~v~vwd~~~~~~~~~~~~---------~~~-~v~~v~~~p~~-~~~~t 480 (513)
..++||++++-=|.|. -|+++++..+.......+ +.. .=-...|+|++ .++-+
T Consensus 289 ~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~ 368 (386)
T PF14583_consen 289 MSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFR 368 (386)
T ss_dssp EE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEE
T ss_pred EEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEE
Confidence 6688998776544432 466788887765432211 111 11357899994 44544
Q ss_pred eCC
Q 037288 481 IEG 483 (513)
Q Consensus 481 ~~~ 483 (513)
++.
T Consensus 369 Sd~ 371 (386)
T PF14583_consen 369 SDM 371 (386)
T ss_dssp E-T
T ss_pred CCC
Confidence 444
No 393
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.81 E-value=14 Score=34.65 Aligned_cols=206 Identities=11% Similarity=0.064 Sum_probs=117.3
Q ss_pred eccccCcEEEEEEcCCCCEEEEEeCCe-EEEEECCCCcEEEEee--eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCC
Q 037288 252 VASFKCTVWTADFCTNPSQAVIGTNLG-AAMVDMETGMASWVCR--SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKR 328 (513)
Q Consensus 252 ~~~h~~~V~~~~~s~~g~~l~s~s~~~-i~vwd~~~~~~~~~~~--~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~ 328 (513)
+.+-...|.++.|+|+.+.|.+..+.. ..|+=..+|+.+..+. .-.+--+|.+..+++++++--+++.+.++-+...
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 445556699999999999887776654 5566556688777765 3344567778888888888888999999887765
Q ss_pred ccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeec-CCCceEEEEEcCCCCEEEEEecCCeEEEEecCCC
Q 037288 329 QRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFM-PSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLT 407 (513)
Q Consensus 329 ~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~ 407 (513)
......... .+. ...... ..+... .++++..+.|..+=.-.-+.||.....
T Consensus 161 t~~~~~~~~--------~i~-------------------L~~~~k~N~GfEG-lA~d~~~~~l~~aKEr~P~~I~~~~~~ 212 (316)
T COG3204 161 TTVISAKVQ--------KIP-------------------LGTTNKKNKGFEG-LAWDPVDHRLFVAKERNPIGIFEVTQS 212 (316)
T ss_pred ccEEeccce--------EEe-------------------ccccCCCCcCcee-eecCCCCceEEEEEccCCcEEEEEecC
Confidence 432100000 000 000000 112222 366777777777777667777765311
Q ss_pred Ccc-ceEEecCCCCc--eeE---EEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeEEEEec---------CCCCCeEEEEE
Q 037288 408 TRG-AVQSYEGHVNS--HTR---IQLGVDQ-SERFVMSGGEDCKLRIWSIRSGELVFEDK---------FSNSVPSAVCW 471 (513)
Q Consensus 408 ~~~-~~~~~~~h~~~--v~~---~~~~~s~-~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~---------~~~~~v~~v~~ 471 (513)
... .+.....+... +.. -.+.|++ .+.+|+-+.+++.+.-.|.. |..+..+. ..-....+++.
T Consensus 213 ~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiam 291 (316)
T COG3204 213 PSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAM 291 (316)
T ss_pred CcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEE
Confidence 111 11111222211 111 1155665 35566666777777777754 44333321 11123567888
Q ss_pred cCCCceEEeeCCCee
Q 037288 472 RTQRSMGPQIEGKIH 486 (513)
Q Consensus 472 ~p~~~~~~t~~~~~~ 486 (513)
.+++.+++.++-+..
T Consensus 292 Dd~g~lYIvSEPnlf 306 (316)
T COG3204 292 DDDGNLYIVSEPNLF 306 (316)
T ss_pred CCCCCEEEEecCCcc
Confidence 888877777776644
No 394
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=90.75 E-value=14 Score=34.34 Aligned_cols=150 Identities=11% Similarity=0.057 Sum_probs=79.5
Q ss_pred CCCeEEEEEecCC-cEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecC
Q 037288 296 KSDILAQQVIHSG-NVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMP 374 (513)
Q Consensus 296 ~~~V~~l~~~~~~-~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~ 374 (513)
...+..++|+|+. .++++....+.|..++.. ++... -..+.+ .
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr-~i~l~g----------------------------------~ 64 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLR-RIPLDG----------------------------------F 64 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEE-EEE-SS-----------------------------------
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEE-EEeCCC----------------------------------C
Confidence 3459999999975 577788888999888874 43322 011111 1
Q ss_pred CCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCcc----ceEEec-----CCCCceeEEEEEEcCCCCEEEEEeCCCcE
Q 037288 375 SSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRG----AVQSYE-----GHVNSHTRIQLGVDQSERFVMSGGEDCKL 445 (513)
Q Consensus 375 ~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~----~~~~~~-----~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v 445 (513)
+....+ .+-.++.++++.-.++.+.++++...... .+..+. .+...... ++|++.++.|+.+-+..-.
T Consensus 65 ~D~EgI-~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EG--la~D~~~~~L~v~kE~~P~ 141 (248)
T PF06977_consen 65 GDYEGI-TYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEG--LAYDPKTNRLFVAKERKPK 141 (248)
T ss_dssp SSEEEE-EE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EE--EEEETTTTEEEEEEESSSE
T ss_pred CCceeE-EEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEE--EEEcCCCCEEEEEeCCCCh
Confidence 122222 33345655555555899999988421111 122222 23334566 8999998888888888777
Q ss_pred EEEeCCC---CeEEEEe--------cCCCCCeEEEEEcCC-CceEEeeCCC
Q 037288 446 RIWSIRS---GELVFED--------KFSNSVPSAVCWRTQ-RSMGPQIEGK 484 (513)
Q Consensus 446 ~vwd~~~---~~~~~~~--------~~~~~~v~~v~~~p~-~~~~~t~~~~ 484 (513)
.||.+.. ...+... ......+.+++++|. +.+++-++..
T Consensus 142 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es 192 (248)
T PF06977_consen 142 RLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDES 192 (248)
T ss_dssp EEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTT
T ss_pred hhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCC
Confidence 7777754 2222221 112345889999998 4544444433
No 395
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=90.50 E-value=16 Score=34.48 Aligned_cols=142 Identities=11% Similarity=0.053 Sum_probs=81.9
Q ss_pred CCCEEEEEeCCeEEEEECCCC-----cEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccc--
Q 037288 267 NPSQAVIGTNLGAAMVDMETG-----MASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRR-- 339 (513)
Q Consensus 267 ~g~~l~s~s~~~i~vwd~~~~-----~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~-- 339 (513)
....|+++....|.+|..... +....+.-...+.+++|. ++.|+.|..++ ..+.|+.++.... +.....
T Consensus 104 ~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~-l~~~~~~~ 179 (275)
T PF00780_consen 104 GSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPSE-LLDPSDSS 179 (275)
T ss_pred cceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCceE-EeCccCCc
Confidence 455777777888887765542 345556677889999998 66777776554 7788998665433 211111
Q ss_pred --------cCcCeEEEeeCC-eEEEeE-----eecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecC
Q 037288 340 --------HRIPYSRLQRND-RVTNEQ-----WFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHR 405 (513)
Q Consensus 340 --------h~~~v~~v~~~~-~~~s~~-----w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~ 405 (513)
...++..+.... .++-+. +-...|.......+.-......+... ..||++.+. +.|.||++.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~e~Ll~~~~~g~fv~~~G~~~r~~~i~W~~~p~~~~~~---~pyli~~~~-~~iEV~~~~ 255 (275)
T PF00780_consen 180 SSFKSRNSSSKPLGIFQLSDNEFLLCYDNIGVFVNKNGEPSRKSTIQWSSAPQSVAYS---SPYLIAFSS-NSIEVRSLE 255 (275)
T ss_pred chhhhcccCCCceEEEEeCCceEEEEecceEEEEcCCCCcCcccEEEcCCchhEEEEE---CCEEEEECC-CEEEEEECc
Confidence 123444444443 222221 33334443333344445555555443 346665554 569999997
Q ss_pred CCCccceEEecCC
Q 037288 406 LTTRGAVQSYEGH 418 (513)
Q Consensus 406 ~~~~~~~~~~~~h 418 (513)
+...++++...
T Consensus 256 --~~~lvQ~i~~~ 266 (275)
T PF00780_consen 256 --TGELVQTIPLP 266 (275)
T ss_pred --CCcEEEEEECC
Confidence 55577777643
No 396
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=90.05 E-value=16 Score=34.05 Aligned_cols=189 Identities=10% Similarity=-0.049 Sum_probs=100.7
Q ss_pred cEEEEEEcCCCCEEEEEe--CCe--EEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEE-CCCCcccc
Q 037288 258 TVWTADFCTNPSQAVIGT--NLG--AAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVD-VRKRQRGC 332 (513)
Q Consensus 258 ~V~~~~~s~~g~~l~s~s--~~~--i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd-~~~~~~~~ 332 (513)
.+...++++++..+|... ++. +.++..... .........+..-.|++++.+.+....+...+++. ...+....
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~--~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~ 102 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP--VRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP 102 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc--ceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence 688999999999887655 444 555544332 22222334688889999988777776666666663 23332211
Q ss_pred ccc-cccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEe---cCCeEEEEecCCCC
Q 037288 333 SSR-AGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASS---MDGTVKLYDHRLTT 408 (513)
Q Consensus 333 ~~~-~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s---~dg~i~lwd~~~~~ 408 (513)
+. ....-...|.+ ..++|||..++.-. .++.|.+--+....
T Consensus 103 -~~v~~~~~~~~I~~----------------------------------l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~ 147 (253)
T PF10647_consen 103 -VEVDWPGLRGRITA----------------------------------LRVSPDGTRVAVVVEDGGGGRVYVAGVVRDG 147 (253)
T ss_pred -EEecccccCCceEE----------------------------------EEECCCCcEEEEEEecCCCCeEEEEEEEeCC
Confidence 00 00000003333 36778998887655 34666666442111
Q ss_pred cc-------ceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCc-EEE-EeCCCCeEEEEecC--CCCCeEEEEEcCCCce
Q 037288 409 RG-------AVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCK-LRI-WSIRSGELVFEDKF--SNSVPSAVCWRTQRSM 477 (513)
Q Consensus 409 ~~-------~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~-v~v-wd~~~~~~~~~~~~--~~~~v~~v~~~p~~~~ 477 (513)
.+ ++.........+ ..++|.+++.+++.+...+. +.. ..+..+. ...+.. ...++.++.=++ ..+
T Consensus 148 ~g~~~~l~~~~~~~~~~~~~v--~~v~W~~~~~L~V~~~~~~~~~~~~v~~dG~~-~~~l~~~~~~~~v~a~~~~~-~~~ 223 (253)
T PF10647_consen 148 DGVPRRLTGPRRVAPPLLSDV--TDVAWSDDSTLVVLGRSAGGPVVRLVSVDGGP-STPLPSVNLGVPVVAVAASP-STV 223 (253)
T ss_pred CCCcceeccceEecccccCcc--eeeeecCCCEEEEEeCCCCCceeEEEEccCCc-ccccCCCCCCcceEEeeCCC-cEE
Confidence 22 112222222333 34899999987776655433 444 3433322 222211 123344444333 347
Q ss_pred EEeeCCCeee
Q 037288 478 GPQIEGKIHE 487 (513)
Q Consensus 478 ~~t~~~~~~~ 487 (513)
+++.++.+.+
T Consensus 224 ~~t~~~~~~~ 233 (253)
T PF10647_consen 224 YVTDDGGVLQ 233 (253)
T ss_pred EEECCCcEEE
Confidence 8888777764
No 397
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=89.29 E-value=17 Score=36.63 Aligned_cols=145 Identities=10% Similarity=0.057 Sum_probs=74.2
Q ss_pred cEEEEEeCCCeEEEEECCCCccccccccc--cccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcC-
Q 037288 309 NVVLCGFRNGAIVTVDVRKRQRGCSSRAG--RRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQL- 385 (513)
Q Consensus 309 ~~l~sg~~dg~i~iwd~~~~~~~~~~~~~--~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~- 385 (513)
..|++|+.+|.++||+........ ...+ ..-..||..+...+ +.+.
T Consensus 38 d~IivGS~~G~LrIy~P~~~~~~~-~~lllE~~l~~PILqv~~G~------------------------------F~s~~ 86 (418)
T PF14727_consen 38 DKIIVGSYSGILRIYDPSGNEFQP-EDLLLETQLKDPILQVECGK------------------------------FVSGS 86 (418)
T ss_pred cEEEEeccccEEEEEccCCCCCCC-ccEEEEEecCCcEEEEEecc------------------------------ccCCC
Confidence 689999999999999996544222 0011 11134555544311 1111
Q ss_pred CCCEEEEEecCCeEEEEecCCCCcc-------ceEEecCCCCceeEEEEEEcC----C-CCEEEEEeCCCcEEEEeCCCC
Q 037288 386 YDQYFLASSMDGTVKLYDHRLTTRG-------AVQSYEGHVNSHTRIQLGVDQ----S-ERFVMSGGEDCKLRIWSIRSG 453 (513)
Q Consensus 386 ~~~~l~s~s~dg~i~lwd~~~~~~~-------~~~~~~~h~~~v~~~~~~~s~----~-g~~l~sg~~Dg~v~vwd~~~~ 453 (513)
+...||+ -.-..+.+|.+...... .+..+..|.=..+...++.-| . -.+|..=+.||.+.+|+-+.-
T Consensus 87 ~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~ 165 (418)
T PF14727_consen 87 EDLQLAV-LHPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESF 165 (418)
T ss_pred CcceEEE-ecCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcE
Confidence 1223333 33345556655311110 222222343333333344433 2 246777899999999996554
Q ss_pred eEEEEecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288 454 ELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIH 486 (513)
Q Consensus 454 ~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~ 486 (513)
-..+.+.. --...-++|.+....|++.+.+..
T Consensus 166 ~f~~~lp~-~llPgPl~Y~~~tDsfvt~sss~~ 197 (418)
T PF14727_consen 166 AFSRFLPD-FLLPGPLCYCPRTDSFVTASSSWT 197 (418)
T ss_pred EEEEEcCC-CCCCcCeEEeecCCEEEEecCcee
Confidence 44444433 233445788888655665555533
No 398
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=89.27 E-value=22 Score=34.31 Aligned_cols=147 Identities=7% Similarity=-0.050 Sum_probs=80.2
Q ss_pred cEEEEEEcCCCCEEEEEeC------C----eEEEEECC-CCcEEEEeee-CCCeEEEEEecCCcEEEEEeC-CCeEEEEE
Q 037288 258 TVWTADFCTNPSQAVIGTN------L----GAAMVDME-TGMASWVCRS-KSDILAQQVIHSGNVVLCGFR-NGAIVTVD 324 (513)
Q Consensus 258 ~V~~~~~s~~g~~l~s~s~------~----~i~vwd~~-~~~~~~~~~~-~~~V~~l~~~~~~~~l~sg~~-dg~i~iwd 324 (513)
.-+++...|+|.+.+.... . .-.||-+. .+..+..... -.--+.|+|+||++.++.+.. .+.|.-|+
T Consensus 112 r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~ 191 (307)
T COG3386 112 RPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYD 191 (307)
T ss_pred CCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEe
Confidence 4567777888887775422 0 11345444 4555554442 334589999999977776644 57888887
Q ss_pred CCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeec-CCCceEEEEEcCCCCEEEEEecCC-eEEEE
Q 037288 325 VRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFM-PSSISCLQSLQLYDQYFLASSMDG-TVKLY 402 (513)
Q Consensus 325 ~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~s~s~dg-~i~lw 402 (513)
+....... .+- ...+ .... +...-. .+...+|++.+++-.+| .|.+|
T Consensus 192 ~d~~~g~~-----~~~---~~~~----------------------~~~~~~G~PDG-~~vDadG~lw~~a~~~g~~v~~~ 240 (307)
T COG3386 192 LDPATGPI-----GGR---RGFV----------------------DFDEEPGLPDG-MAVDADGNLWVAAVWGGGRVVRF 240 (307)
T ss_pred cCcccCcc-----CCc---ceEE----------------------EccCCCCCCCc-eEEeCCCCEEEecccCCceEEEE
Confidence 76311100 000 0000 0001 111111 35566888876555554 89999
Q ss_pred ecCCCCccceEEecCCCCceeEEEEEE-cCCCCEEEEEe
Q 037288 403 DHRLTTRGAVQSYEGHVNSHTRIQLGV-DQSERFVMSGG 440 (513)
Q Consensus 403 d~~~~~~~~~~~~~~h~~~v~~~~~~~-s~~g~~l~sg~ 440 (513)
+. +...+..+.-....+++ ++| .++.+.|+..+
T Consensus 241 ~p---dG~l~~~i~lP~~~~t~--~~FgG~~~~~L~iTs 274 (307)
T COG3386 241 NP---DGKLLGEIKLPVKRPTN--PAFGGPDLNTLYITS 274 (307)
T ss_pred CC---CCcEEEEEECCCCCCcc--ceEeCCCcCEEEEEe
Confidence 97 44477777766555555 444 34445554433
No 399
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=88.92 E-value=24 Score=38.70 Aligned_cols=163 Identities=12% Similarity=0.104 Sum_probs=96.2
Q ss_pred EEEEECCCCcEEEEeee-----CCCeEEEEEecC-CcEEEEEeC----------CCeEEEEECCCCccccccccccccCc
Q 037288 279 AAMVDMETGMASWVCRS-----KSDILAQQVIHS-GNVVLCGFR----------NGAIVTVDVRKRQRGCSSRAGRRHRI 342 (513)
Q Consensus 279 i~vwd~~~~~~~~~~~~-----~~~V~~l~~~~~-~~~l~sg~~----------dg~i~iwd~~~~~~~~~~~~~~~h~~ 342 (513)
++++|-+|-+.....+. ...+.++.|..| +.++++|+. .|.|.++.......
T Consensus 752 l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~------------ 819 (1096)
T KOG1897|consen 752 LRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS------------ 819 (1096)
T ss_pred EEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCc------------
Confidence 67777777665554441 123566668877 567777642 24444444433111
Q ss_pred CeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCce
Q 037288 343 PYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSH 422 (513)
Q Consensus 343 ~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v 422 (513)
+...+.....+.+..+..| +|+++| +-+..|++|+.. ..+.++.-..|...+
T Consensus 820 ----------------------L~~v~e~~v~Gav~aL~~f--ngkllA--~In~~vrLye~t--~~~eLr~e~~~~~~~ 871 (1096)
T KOG1897|consen 820 ----------------------LELVAETVVKGAVYALVEF--NGKLLA--GINQSVRLYEWT--TERELRIECNISNPI 871 (1096)
T ss_pred ----------------------eeeeeeeeeccceeehhhh--CCeEEE--ecCcEEEEEEcc--ccceehhhhcccCCe
Confidence 1112233334555555555 466665 456789999985 333555556677777
Q ss_pred eEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe--EEEEe-cCCCCCeEEEEEcCCCceEEeeCC
Q 037288 423 TRIQLGVDQSERFVMSGGEDCKLRIWSIRSGE--LVFED-KFSNSVPSAVCWRTQRSMGPQIEG 483 (513)
Q Consensus 423 ~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~--~~~~~-~~~~~~v~~v~~~p~~~~~~t~~~ 483 (513)
.. +...-.|..++.|..-+.+.+-..+..+ ....- ..+..+.+++.+-.+..++.+...
T Consensus 872 ~a--L~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~ylgae~~ 933 (1096)
T KOG1897|consen 872 IA--LDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYLGAENS 933 (1096)
T ss_pred EE--EEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEEeeccc
Confidence 66 5555678899999888877776555444 43332 234566778877776655555443
No 400
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=88.44 E-value=32 Score=36.94 Aligned_cols=163 Identities=11% Similarity=-0.009 Sum_probs=88.6
Q ss_pred CCEEEEEeCCeEEEEECCCCcEE-------EEee----------------eCCCeEEEEEec--CCcEEEEEeCCCeEEE
Q 037288 268 PSQAVIGTNLGAAMVDMETGMAS-------WVCR----------------SKSDILAQQVIH--SGNVVLCGFRNGAIVT 322 (513)
Q Consensus 268 g~~l~s~s~~~i~vwd~~~~~~~-------~~~~----------------~~~~V~~l~~~~--~~~~l~sg~~dg~i~i 322 (513)
..+++++..+.|.||+...-... .... .+..|.-+.... +..+|+.+..||.|.+
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~ 128 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVLA 128 (717)
T ss_pred CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEEE
Confidence 77888888999999987643211 1100 011244443332 3468999999999999
Q ss_pred EECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEc--CCCCEEEEEecCCeEE
Q 037288 323 VDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQ--LYDQYFLASSMDGTVK 400 (513)
Q Consensus 323 wd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~s~s~dg~i~ 400 (513)
|.+..--.. +... ....... . ......|...+....++-.+ +++ ...+++|+++....|.
T Consensus 129 Yyt~~I~~~--i~~~---~~~~~~~-~-----------~r~~i~P~f~~~v~~SaWGL-dIh~~~~~rlIAVSsNs~~VT 190 (717)
T PF08728_consen 129 YYTETIIEA--IERF---SEDNDSG-F-----------SRLKIKPFFHLRVGASAWGL-DIHDYKKSRLIAVSSNSQEVT 190 (717)
T ss_pred EEHHHHHHH--HHhh---ccccccc-c-----------ccccCCCCeEeecCCceeEE-EEEecCcceEEEEecCCceEE
Confidence 976421100 0011 0000000 0 00112344455555555555 333 5677888888888899
Q ss_pred EEecCCCCcc-ceEEecCCCCceeEEEEEEcC-----CCC-EEEEEeCCCcEEEEeC
Q 037288 401 LYDHRLTTRG-AVQSYEGHVNSHTRIQLGVDQ-----SER-FVMSGGEDCKLRIWSI 450 (513)
Q Consensus 401 lwd~~~~~~~-~~~~~~~h~~~v~~~~~~~s~-----~g~-~l~sg~~Dg~v~vwd~ 450 (513)
||-+...+.. ....-..|...|.+ ++|-+ +|. +|++++-.|.+.+|++
T Consensus 191 VFaf~l~~~r~~~~~s~~~~hNIP~--VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 191 VFAFALVDERFYHVPSHQHSHNIPN--VSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEeccccccccccccccccCCCe--eEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 8876532222 11111113444555 55533 233 7888999999999888
No 401
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=88.17 E-value=26 Score=33.93 Aligned_cols=218 Identities=7% Similarity=-0.021 Sum_probs=111.0
Q ss_pred EEEcCCCCEEEEEe-----------CCeEEEEECCCCcEEEEeeeCC--------CeEEEEEecCCcEEEEE--eCCCeE
Q 037288 262 ADFCTNPSQAVIGT-----------NLGAAMVDMETGMASWVCRSKS--------DILAQQVIHSGNVVLCG--FRNGAI 320 (513)
Q Consensus 262 ~~~s~~g~~l~s~s-----------~~~i~vwd~~~~~~~~~~~~~~--------~V~~l~~~~~~~~l~sg--~~dg~i 320 (513)
+..+|+++.+.++. .+-|.+||..+-.....+.-+. ....++++.||++++.. +--..|
T Consensus 41 ~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SV 120 (342)
T PF06433_consen 41 VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSV 120 (342)
T ss_dssp EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEE
T ss_pred eeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeE
Confidence 56789999887653 2338999999987665444221 12456788899876665 345688
Q ss_pred EEEECCCCccccccccccc-------cCcCeEEEeeCCeEEEeEeecccCcccceeEeec--CCCceEEEEEcCCCCEEE
Q 037288 321 VTVDVRKRQRGCSSRAGRR-------HRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFM--PSSISCLQSLQLYDQYFL 391 (513)
Q Consensus 321 ~iwd~~~~~~~~~~~~~~~-------h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~ 391 (513)
.|.|+...+... ....++ -......+|-.-.+++-..+...........+.+ .+++..-..+...+..++
T Consensus 121 tVVDl~~~kvv~-ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~ 199 (342)
T PF06433_consen 121 TVVDLAAKKVVG-EIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLY 199 (342)
T ss_dssp EEEETTTTEEEE-EEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEE
T ss_pred EEEECCCCceee-eecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEE
Confidence 899998776432 001111 1111122211113333323321111111111222 112222223334455566
Q ss_pred EEecCCeEEEEecCCCCccceEEecCCC----------CceeEEEEEEcCCCCEEEEE---eCCC-------cEEEEeCC
Q 037288 392 ASSMDGTVKLYDHRLTTRGAVQSYEGHV----------NSHTRIQLGVDQSERFVMSG---GEDC-------KLRIWSIR 451 (513)
Q Consensus 392 s~s~dg~i~lwd~~~~~~~~~~~~~~h~----------~~v~~~~~~~s~~g~~l~sg---~~Dg-------~v~vwd~~ 451 (513)
--+.+|.|+--|+.-........+.--. +.... +++++..+.|+.- +.+| .|.++|+.
T Consensus 200 F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~--~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~ 277 (342)
T PF06433_consen 200 FVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQL--IAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLK 277 (342)
T ss_dssp EEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS---EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETT
T ss_pred EEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceee--eeeccccCeEEEEecCCCCCCccCCceEEEEEECC
Confidence 5788999998888521111333332111 11112 6777766555442 2222 48888999
Q ss_pred CCeEEEEecCCCCCeEEEEEcCC--CceEEeeCC
Q 037288 452 SGELVFEDKFSNSVPSAVCWRTQ--RSMGPQIEG 483 (513)
Q Consensus 452 ~~~~~~~~~~~~~~v~~v~~~p~--~~~~~t~~~ 483 (513)
+++.+..+.. ..++.+++.+.+ ..+++.+..
T Consensus 278 t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~ 310 (342)
T PF06433_consen 278 THKRVARIPL-EHPIDSIAVSQDDKPLLYALSAG 310 (342)
T ss_dssp TTEEEEEEEE-EEEESEEEEESSSS-EEEEEETT
T ss_pred CCeEEEEEeC-CCccceEEEccCCCcEEEEEcCC
Confidence 9999999865 345778888887 455555543
No 402
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=88.14 E-value=28 Score=34.60 Aligned_cols=58 Identities=10% Similarity=-0.034 Sum_probs=36.2
Q ss_pred EEEEcCCCCEEEEEeCC-------------------CcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCC
Q 037288 426 QLGVDQSERFVMSGGED-------------------CKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGK 484 (513)
Q Consensus 426 ~~~~s~~g~~l~sg~~D-------------------g~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~ 484 (513)
.+.|.|||.+.++-+.. |.|.-++..+++. ..+...-.-...++|+|++.++++...+
T Consensus 128 ~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 128 SLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred CceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeE-EEEecCcCCCccceECCCCCEEEEccCC
Confidence 37889999876655421 4456666655543 2332222235789999998888876643
No 403
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=87.89 E-value=24 Score=33.21 Aligned_cols=153 Identities=10% Similarity=0.036 Sum_probs=93.7
Q ss_pred EEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCccccee
Q 037288 290 SWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSH 369 (513)
Q Consensus 290 ~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~ 369 (513)
+......+-+..+.++ +++++.+..+.-++|.|+.++.... +..+..-.
T Consensus 80 ~~~i~~~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~-~~~~lnt~---------------------------- 128 (370)
T COG5276 80 LSVINARDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPT-LIGFLNTD---------------------------- 128 (370)
T ss_pred EEEEehhhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcc-eeccccCC----------------------------
Confidence 3334455567777776 5677888888889999999886432 11111000
Q ss_pred EeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCcc-ceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEE
Q 037288 370 TTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRG-AVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIW 448 (513)
Q Consensus 370 ~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~-~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vw 448 (513)
...- .+.-.|++..++..|.-..+.|+..++.. ....+......- ..+++| |++-..+..|+-+.+-
T Consensus 129 ------gyay--gv~vsGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~--~~v~IS--Gn~AYvA~~d~GL~iv 196 (370)
T COG5276 129 ------GYAY--GVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDT--HDVAIS--GNYAYVAWRDGGLTIV 196 (370)
T ss_pred ------ceEE--EEEecCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCc--eeEEEe--cCeEEEEEeCCCeEEE
Confidence 1111 12235899998887777888999743333 223333322221 224554 8888888999999999
Q ss_pred eCCCCe---EEEEecCCCCCeEEEEEcCCCceEEeeCCCee
Q 037288 449 SIRSGE---LVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIH 486 (513)
Q Consensus 449 d~~~~~---~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~ 486 (513)
|+.+.. ++..... +..+.++..+++..+++--+..+.
T Consensus 197 DVSnp~sPvli~~~n~-g~g~~sv~vsdnr~y~vvy~egvl 236 (370)
T COG5276 197 DVSNPHSPVLIGSYNT-GPGTYSVSVSDNRAYLVVYDEGVL 236 (370)
T ss_pred EccCCCCCeEEEEEec-CCceEEEEecCCeeEEEEcccceE
Confidence 997653 3333333 335788888888776665555444
No 404
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=87.76 E-value=3.2 Score=26.05 Aligned_cols=40 Identities=5% Similarity=0.033 Sum_probs=29.1
Q ss_pred CCCCEEEEEe-CCCcEEEEeCCCCeEEEEecCCCCCeEEEEE
Q 037288 431 QSERFVMSGG-EDCKLRIWSIRSGELVFEDKFSNSVPSAVCW 471 (513)
Q Consensus 431 ~~g~~l~sg~-~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~ 471 (513)
|++++|+++. .++.|.++|..+++.+..+... .....++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 5677776655 4789999999999998887763 33445554
No 405
>PHA03098 kelch-like protein; Provisional
Probab=87.72 E-value=19 Score=37.84 Aligned_cols=67 Identities=6% Similarity=0.072 Sum_probs=35.2
Q ss_pred CCCEEEEEecC------CeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCC--------cEEEEeCC
Q 037288 386 YDQYFLASSMD------GTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDC--------KLRIWSIR 451 (513)
Q Consensus 386 ~~~~l~s~s~d------g~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg--------~v~vwd~~ 451 (513)
+++.++.|+.+ ..+..||+.......+..+....... ++ ...++.+.+.||.+. .+.+||..
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~---~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~ 464 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG---CA-IYHDGKIYVIGGISYIDNIKVYNIVESYNPV 464 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc---eE-EEECCEEEEECCccCCCCCcccceEEEecCC
Confidence 57777777732 35788888632222222221111111 11 223466667776532 38889988
Q ss_pred CCeEE
Q 037288 452 SGELV 456 (513)
Q Consensus 452 ~~~~~ 456 (513)
+++-.
T Consensus 465 ~~~W~ 469 (534)
T PHA03098 465 TNKWT 469 (534)
T ss_pred CCcee
Confidence 76644
No 406
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=87.19 E-value=10 Score=38.01 Aligned_cols=79 Identities=19% Similarity=0.208 Sum_probs=56.1
Q ss_pred EEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCC-----------------EEEEEeCCC
Q 037288 381 QSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSER-----------------FVMSGGEDC 443 (513)
Q Consensus 381 ~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~-----------------~l~sg~~Dg 443 (513)
+..+|.+++.|+...=|.|.++|+. ....++.++|..+.-..+--......+ +++-+-.-|
T Consensus 313 i~~sP~~~laA~tDslGRV~LiD~~--~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyaprRg 390 (415)
T PF14655_consen 313 ICLSPSGRLAAVTDSLGRVLLIDVA--RGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPRRG 390 (415)
T ss_pred EEECCCCCEEEEEcCCCcEEEEECC--CChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEeccCC
Confidence 5789999998888888999999996 444777788776653222112222111 234567789
Q ss_pred cEEEEeCCCCeEEEEecC
Q 037288 444 KLRIWSIRSGELVFEDKF 461 (513)
Q Consensus 444 ~v~vwd~~~~~~~~~~~~ 461 (513)
.|-||++++|..+..+..
T Consensus 391 ~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 391 ILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred eEEEEecCCCCEEEEEEe
Confidence 999999999999988765
No 407
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=87.03 E-value=3.3 Score=43.71 Aligned_cols=75 Identities=20% Similarity=0.320 Sum_probs=44.6
Q ss_pred CCCCEEEEEecCCeEEEEecCCCC-cc-ceE--EecCC------------------CCceeEEEEEEcC----CCCEEEE
Q 037288 385 LYDQYFLASSMDGTVKLYDHRLTT-RG-AVQ--SYEGH------------------VNSHTRIQLGVDQ----SERFVMS 438 (513)
Q Consensus 385 ~~~~~l~s~s~dg~i~lwd~~~~~-~~-~~~--~~~~h------------------~~~v~~~~~~~s~----~g~~l~s 438 (513)
.+...|+++..||.+......... .+ ... .+..+ .........+++. +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 367788888999998888765310 11 111 11100 0111223355555 6789999
Q ss_pred EeCCCcEEEEeCCCCeEEEEe
Q 037288 439 GGEDCKLRIWSIRSGELVFED 459 (513)
Q Consensus 439 g~~Dg~v~vwd~~~~~~~~~~ 459 (513)
.+.|+++|+||+.+++++.+.
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999997664
No 408
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=86.44 E-value=36 Score=37.40 Aligned_cols=26 Identities=12% Similarity=0.229 Sum_probs=23.3
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEec
Q 037288 435 FVMSGGEDCKLRIWSIRSGELVFEDK 460 (513)
Q Consensus 435 ~l~sg~~Dg~v~vwd~~~~~~~~~~~ 460 (513)
.++.+..+|.+++.|-++|+++....
T Consensus 461 ~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 461 ALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred EEEEECCCCEEEEEECCCCCEEeece
Confidence 78999999999999999999888643
No 409
>PRK13616 lipoprotein LpqB; Provisional
Probab=86.42 E-value=25 Score=37.34 Aligned_cols=60 Identities=13% Similarity=0.049 Sum_probs=37.5
Q ss_pred CceeEEEEEEcCCCCEEEEEeCCCcEEE---EeCCCCeE-E---EEecC-CCCCeEEEEEcCCCceEEeeC
Q 037288 420 NSHTRIQLGVDQSERFVMSGGEDCKLRI---WSIRSGEL-V---FEDKF-SNSVPSAVCWRTQRSMGPQIE 482 (513)
Q Consensus 420 ~~v~~~~~~~s~~g~~l~sg~~Dg~v~v---wd~~~~~~-~---~~~~~-~~~~v~~v~~~p~~~~~~t~~ 482 (513)
+.+.. +.|||||..|+... +|.|++ -....|+. + ..+.. -...+.++.|.++..+++...
T Consensus 448 g~Iss--l~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~ 515 (591)
T PRK13616 448 GPISE--LQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRS 515 (591)
T ss_pred CCcCe--EEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEec
Confidence 44555 88999999887765 577877 44445541 1 11222 233468899999976555444
No 410
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=86.20 E-value=33 Score=32.96 Aligned_cols=96 Identities=10% Similarity=-0.002 Sum_probs=51.4
Q ss_pred ccCcEEEEEEcCCCCEEEEEeCCeE-EEEECCCCc-EEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCC-cc-
Q 037288 255 FKCTVWTADFCTNPSQAVIGTNLGA-AMVDMETGM-ASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKR-QR- 330 (513)
Q Consensus 255 h~~~V~~~~~s~~g~~l~s~s~~~i-~vwd~~~~~-~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~-~~- 330 (513)
-...+..+.-+++|+++++++.+.+ .-||--... ..........|.++.|.|++.+.+.+ +.|.|+.=+.... ..
T Consensus 143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w 221 (302)
T PF14870_consen 143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETW 221 (302)
T ss_dssp ----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE
T ss_pred CcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcccc
Confidence 3367888999999999999988874 567754322 22222245679999999998877765 8899998872211 11
Q ss_pred ccccccccccCcCeEEEeeCC
Q 037288 331 GCSSRAGRRHRIPYSRLQRND 351 (513)
Q Consensus 331 ~~~~~~~~~h~~~v~~v~~~~ 351 (513)
...+.....-...+..++|.+
T Consensus 222 ~~~~~~~~~~~~~~ld~a~~~ 242 (302)
T PF14870_consen 222 SEPIIPIKTNGYGILDLAYRP 242 (302)
T ss_dssp ---B-TTSS--S-EEEEEESS
T ss_pred ccccCCcccCceeeEEEEecC
Confidence 000111222233467788876
No 411
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=85.86 E-value=2.9 Score=26.76 Aligned_cols=31 Identities=16% Similarity=0.221 Sum_probs=23.3
Q ss_pred CcEEEEEEcCCC---CEEEEEeC-CeEEEEECCCC
Q 037288 257 CTVWTADFCTNP---SQAVIGTN-LGAAMVDMETG 287 (513)
Q Consensus 257 ~~V~~~~~s~~g---~~l~s~s~-~~i~vwd~~~~ 287 (513)
++|.++.|+|++ .+|+.+-+ +.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 468999999844 47876644 55999999853
No 412
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=85.76 E-value=0.65 Score=49.49 Aligned_cols=74 Identities=9% Similarity=0.197 Sum_probs=42.8
Q ss_pred ccccCcEEEEEEcC---CCCEEEEEe-CCeEEEEECCCCcEEEEeeeCCCeEEE-----------EEecCCcEEEEEeCC
Q 037288 253 ASFKCTVWTADFCT---NPSQAVIGT-NLGAAMVDMETGMASWVCRSKSDILAQ-----------QVIHSGNVVLCGFRN 317 (513)
Q Consensus 253 ~~h~~~V~~~~~s~---~g~~l~s~s-~~~i~vwd~~~~~~~~~~~~~~~V~~l-----------~~~~~~~~l~sg~~d 317 (513)
......+.-+.|+| +.-++..+- ++.+++.+..+.....+..|...+..+ ..+|||..++.++.|
T Consensus 177 ~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~d 256 (1283)
T KOG1916|consen 177 TPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISD 256 (1283)
T ss_pred CcCCCCcceeeecccccccceeeeccCCCceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecC
Confidence 33344555666665 556666664 344666555433211111133222222 268999999999999
Q ss_pred CeEEEEECC
Q 037288 318 GAIVTVDVR 326 (513)
Q Consensus 318 g~i~iwd~~ 326 (513)
|.++.|.+.
T Consensus 257 G~v~f~Qiy 265 (1283)
T KOG1916|consen 257 GSVGFYQIY 265 (1283)
T ss_pred Cccceeeee
Confidence 999988764
No 413
>PRK10115 protease 2; Provisional
Probab=85.64 E-value=59 Score=35.41 Aligned_cols=70 Identities=7% Similarity=-0.024 Sum_probs=46.8
Q ss_pred CcEEEEEEcCCCCEEEEEeCC------eEEEEECCCCcEEE-EeeeCCCeEEEEEecCCcEEEEEeCC------CeEEEE
Q 037288 257 CTVWTADFCTNPSQAVIGTNL------GAAMVDMETGMASW-VCRSKSDILAQQVIHSGNVVLCGFRN------GAIVTV 323 (513)
Q Consensus 257 ~~V~~~~~s~~g~~l~s~s~~------~i~vwd~~~~~~~~-~~~~~~~V~~l~~~~~~~~l~sg~~d------g~i~iw 323 (513)
-.+..+.++|||++|+.+.|. .+++.|+.+|..+. .+... -..++|.+|++.|+....+ ..|+.+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 356778899999999976431 27888998886321 11111 1569999999755554332 467888
Q ss_pred ECCCC
Q 037288 324 DVRKR 328 (513)
Q Consensus 324 d~~~~ 328 (513)
++.++
T Consensus 205 ~lgt~ 209 (686)
T PRK10115 205 TIGTP 209 (686)
T ss_pred ECCCC
Confidence 88877
No 414
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=85.53 E-value=43 Score=33.67 Aligned_cols=132 Identities=14% Similarity=0.129 Sum_probs=58.3
Q ss_pred cEEEEEEcCCCCEEEEEe---------------------CCeEEEEECCCCcEEEEeeeC---CCeEEEEEecC--CcEE
Q 037288 258 TVWTADFCTNPSQAVIGT---------------------NLGAAMVDMETGMASWVCRSK---SDILAQQVIHS--GNVV 311 (513)
Q Consensus 258 ~V~~~~~s~~g~~l~s~s---------------------~~~i~vwd~~~~~~~~~~~~~---~~V~~l~~~~~--~~~l 311 (513)
--+++-|.|..+.++++. ..++.+||+.+.+.+..+.-. .....|.|..+ ...=
T Consensus 182 ~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~g 261 (461)
T PF05694_consen 182 FGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYG 261 (461)
T ss_dssp ----EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EE
T ss_pred CCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccce
Confidence 456777788777777654 235999999999998888743 23678888754 3333
Q ss_pred EEE-eCCCeEEEEEC-CCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCE
Q 037288 312 LCG-FRNGAIVTVDV-RKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQY 389 (513)
Q Consensus 312 ~sg-~~dg~i~iwd~-~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 389 (513)
++| ...++|..|-- ..++... ..|..|.--+ ...|.+..- +. ..-..+.-++.+ .+|.|.++
T Consensus 262 Fvg~aLss~i~~~~k~~~g~W~a---------~kVi~ip~~~---v~~~~lp~m-l~--~~~~~P~LitDI-~iSlDDrf 325 (461)
T PF05694_consen 262 FVGCALSSSIWRFYKDDDGEWAA---------EKVIDIPAKK---VEGWILPEM-LK--PFGAVPPLITDI-LISLDDRF 325 (461)
T ss_dssp EEEEE--EEEEEEEE-ETTEEEE---------EEEEEE--EE-----SS---GG-GG--GG-EE------E-EE-TTS-E
T ss_pred EEEEeccceEEEEEEcCCCCeee---------eEEEECCCcc---cCccccccc-cc--ccccCCCceEeE-EEccCCCE
Confidence 333 23455555433 3333211 0000000000 000000000 00 000012334443 67788888
Q ss_pred EEEEe-cCCeEEEEecC
Q 037288 390 FLASS-MDGTVKLYDHR 405 (513)
Q Consensus 390 l~s~s-~dg~i~lwd~~ 405 (513)
|..++ .+|.|+.||+.
T Consensus 326 LYvs~W~~GdvrqYDIS 342 (461)
T PF05694_consen 326 LYVSNWLHGDVRQYDIS 342 (461)
T ss_dssp EEEEETTTTEEEEEE-S
T ss_pred EEEEcccCCcEEEEecC
Confidence 87766 49999999996
No 415
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=85.21 E-value=51 Score=35.94 Aligned_cols=72 Identities=13% Similarity=0.075 Sum_probs=45.2
Q ss_pred EEEcCCCCEEEEEecCCeEEEEecCC--C-----C---cc-ceEEec------CCCCceeEEEEEEcCC---CCEEEEEe
Q 037288 381 QSLQLYDQYFLASSMDGTVKLYDHRL--T-----T---RG-AVQSYE------GHVNSHTRIQLGVDQS---ERFVMSGG 440 (513)
Q Consensus 381 ~~~~~~~~~l~s~s~dg~i~lwd~~~--~-----~---~~-~~~~~~------~h~~~v~~~~~~~s~~---g~~l~sg~ 440 (513)
+.++++|.+++..+..|. .|-.+.. . . .. ..+++. .-........+.|+|. +.+|+.=.
T Consensus 90 i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vLt 168 (717)
T PF10168_consen 90 ISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVLT 168 (717)
T ss_pred EEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEEe
Confidence 467889999988887654 4444421 0 0 00 111221 1122344566899986 58999999
Q ss_pred CCCcEEEEeCCCC
Q 037288 441 EDCKLRIWSIRSG 453 (513)
Q Consensus 441 ~Dg~v~vwd~~~~ 453 (513)
.|+++++||+...
T Consensus 169 sdn~lR~y~~~~~ 181 (717)
T PF10168_consen 169 SDNTLRLYDISDP 181 (717)
T ss_pred cCCEEEEEecCCC
Confidence 9999999999754
No 416
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.73 E-value=16 Score=40.76 Aligned_cols=90 Identities=13% Similarity=0.060 Sum_probs=59.3
Q ss_pred CCEEEEEecCCeEEEEecCCCCcc-ceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec---C-
Q 037288 387 DQYFLASSMDGTVKLYDHRLTTRG-AVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDK---F- 461 (513)
Q Consensus 387 ~~~l~s~s~dg~i~lwd~~~~~~~-~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~---~- 461 (513)
....++...|+.|++..+. ... .+.++. -....++ ++|+|.|+.++.|-..|++.-|... .+....+. .
T Consensus 168 p~n~av~l~dlsl~V~~~~--~~~~~v~s~p-~t~~~Ta--v~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~ 241 (1405)
T KOG3630|consen 168 PLNSAVDLSDLSLRVKSTK--QLAQNVTSFP-VTNSQTA--VLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVE 241 (1405)
T ss_pred cchhhhhccccchhhhhhh--hhhhhhcccC-cccceee--EEeccccceeeEecCCCeEEEeecc-cceeecccCCCcC
Confidence 3456777889999888774 222 333332 2333444 9999999999999999999988753 33233321 1
Q ss_pred CCCCeEEEEEcCCCceEEeeC
Q 037288 462 SNSVPSAVCWRTQRSMGPQIE 482 (513)
Q Consensus 462 ~~~~v~~v~~~p~~~~~~t~~ 482 (513)
....|.+|+|-....+++.-+
T Consensus 242 e~yrvl~v~Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 242 ENYRVLSVTWLSTQEFLVVYG 262 (1405)
T ss_pred CCcceeEEEEecceeEEEEec
Confidence 146799999998865555443
No 417
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=84.41 E-value=9.5 Score=34.74 Aligned_cols=70 Identities=14% Similarity=0.147 Sum_probs=45.9
Q ss_pred EcCCCCEEEEEecCCeEEEEecCCCCccce------EEe-c-------CCCCceeEEEEEEcCCCCEEEEEeCCCcEEEE
Q 037288 383 LQLYDQYFLASSMDGTVKLYDHRLTTRGAV------QSY-E-------GHVNSHTRIQLGVDQSERFVMSGGEDCKLRIW 448 (513)
Q Consensus 383 ~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~------~~~-~-------~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vw 448 (513)
+..++++|++-+.+|.+++||+.. .+.+ ..+ . .....|.. +.++.+|.-|++-+ +|..+.|
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~--~k~~~~~~Si~pll~~~~~~~~~~~~~i~~--~~lt~~G~PiV~ls-ng~~y~y 92 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKK--GKAVLPPVSIAPLLNSSPVSDKSSSPNITS--CSLTSNGVPIVTLS-NGDSYSY 92 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCC--CeeccCCccHHHHhcccccccCCCCCcEEE--EEEcCCCCEEEEEe-CCCEEEe
Confidence 344789999999999999999973 3211 111 1 13333433 67778887666644 6889999
Q ss_pred eCCCCeEEE
Q 037288 449 SIRSGELVF 457 (513)
Q Consensus 449 d~~~~~~~~ 457 (513)
+..-+.-+.
T Consensus 93 ~~~L~~W~~ 101 (219)
T PF07569_consen 93 SPDLGCWIR 101 (219)
T ss_pred ccccceeEE
Confidence 876555444
No 418
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=84.37 E-value=29 Score=37.72 Aligned_cols=89 Identities=12% Similarity=0.050 Sum_probs=47.8
Q ss_pred CeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEe--ecCC
Q 037288 298 DILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTT--FMPS 375 (513)
Q Consensus 298 ~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~--~~~~ 375 (513)
.|..|.++|+|.+|+..|..|.+.+.=.+.... ...+.+-...|.|-.+.- ....+ ....
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~---~~~~~~g~~~i~Crt~~v---------------~~~~~~~~~~~ 147 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVVLELPRRWGK---NGEFEDGKKEINCRTVPV---------------DERFFTSNSSL 147 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEEEeccccCc---cccccCCCcceeEEEEEe---------------chhhccCCCCc
Confidence 488899999999988888766544433322111 112222222333211100 00000 0111
Q ss_pred CceEEEEEcC---CCCEEEEEecCCeEEEEecC
Q 037288 376 SISCLQSLQL---YDQYFLASSMDGTVKLYDHR 405 (513)
Q Consensus 376 ~v~~~~~~~~---~~~~l~s~s~dg~i~lwd~~ 405 (513)
.+.. +.|+| ++..|++-+.|+.+++||+.
T Consensus 148 ~i~q-v~WhP~s~~~~~l~vLtsdn~lR~y~~~ 179 (717)
T PF10168_consen 148 EIKQ-VRWHPWSESDSHLVVLTSDNTLRLYDIS 179 (717)
T ss_pred eEEE-EEEcCCCCCCCeEEEEecCCEEEEEecC
Confidence 2233 34444 46889999999999999996
No 419
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=84.11 E-value=17 Score=38.98 Aligned_cols=109 Identities=10% Similarity=0.075 Sum_probs=64.4
Q ss_pred CCCEEEEEeCCe-EEEEECCC-------C-------------cEEEEeeeCCCeEEEEEe--cCCcEEEEEeCCCeEEEE
Q 037288 267 NPSQAVIGTNLG-AAMVDMET-------G-------------MASWVCRSKSDILAQQVI--HSGNVVLCGFRNGAIVTV 323 (513)
Q Consensus 267 ~g~~l~s~s~~~-i~vwd~~~-------~-------------~~~~~~~~~~~V~~l~~~--~~~~~l~sg~~dg~i~iw 323 (513)
+...|+.+.|++ |.+|.+++ . ++-..+.....+++++++ ...++||+++....|.||
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 445666665555 89995521 0 012223345678999999 778999999999999988
Q ss_pred ECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCC-EEEEEecCCeEEEE
Q 037288 324 DVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQ-YFLASSMDGTVKLY 402 (513)
Q Consensus 324 d~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~s~s~dg~i~lw 402 (513)
-............-..|...|.+|+|-+ ....+.|. .+++++-.|.+.+|
T Consensus 193 af~l~~~r~~~~~s~~~~hNIP~VSFl~-----------------------------~~~d~~G~v~v~a~dI~G~v~~~ 243 (717)
T PF08728_consen 193 AFALVDERFYHVPSHQHSHNIPNVSFLD-----------------------------DDLDPNGHVKVVATDISGEVWTF 243 (717)
T ss_pred EEeccccccccccccccccCCCeeEeec-----------------------------CCCCCccceEEEEEeccCcEEEE
Confidence 6654321110111112444555555522 01122343 67778888998888
Q ss_pred ec
Q 037288 403 DH 404 (513)
Q Consensus 403 d~ 404 (513)
++
T Consensus 244 ~I 245 (717)
T PF08728_consen 244 KI 245 (717)
T ss_pred EE
Confidence 87
No 420
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=83.89 E-value=31 Score=30.79 Aligned_cols=64 Identities=9% Similarity=0.124 Sum_probs=35.4
Q ss_pred CCCEEEEEe---CCeEEEEECCCCcEEEEeeeC-CCeEEEEEecCCcEEEEE-eCCCeEEEEECCCCcc
Q 037288 267 NPSQAVIGT---NLGAAMVDMETGMASWVCRSK-SDILAQQVIHSGNVVLCG-FRNGAIVTVDVRKRQR 330 (513)
Q Consensus 267 ~g~~l~s~s---~~~i~vwd~~~~~~~~~~~~~-~~V~~l~~~~~~~~l~sg-~~dg~i~iwd~~~~~~ 330 (513)
+|.++.+.+ ...|++||+.+|+.+....-. ..++.=-...-|..+..- =.+|.-..+|.++-+.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~ 123 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEE 123 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhh
Confidence 444554432 334999999999877655433 123222122223333222 2478888888877654
No 421
>PHA02790 Kelch-like protein; Provisional
Probab=83.89 E-value=33 Score=35.52 Aligned_cols=140 Identities=11% Similarity=-0.008 Sum_probs=63.8
Q ss_pred CCcEEEEEeCC-----CeEEEEECCCCccccccccccccCcCeEEEeeCC-eEEEeE---------eecccCcccceeEe
Q 037288 307 SGNVVLCGFRN-----GAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND-RVTNEQ---------WFELKANIWPSHTT 371 (513)
Q Consensus 307 ~~~~l~sg~~d-----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~~s~~---------w~~~~~~~~~~~~~ 371 (513)
++.+++.||.+ ..+..||..+..... +..+.........+.... .++.|+ |+...+.......
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~-~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~- 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIP-IPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS- 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEE-CCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCC-
Confidence 45666777754 357778888765433 333333332233333333 333343 3322222111111
Q ss_pred ecCCCceEEEEEcCCCCEEEEEecCC---eEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEE
Q 037288 372 FMPSSISCLQSLQLYDQYFLASSMDG---TVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIW 448 (513)
Q Consensus 372 ~~~~~v~~~~~~~~~~~~l~s~s~dg---~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vw 448 (513)
.+..........-+++..+.|+.++ .+..||.+......+..+....... + + ..-+|++.+.|+ .+.+|
T Consensus 349 -l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~--~-~~~~~~IYv~GG---~~e~y 420 (480)
T PHA02790 349 -LLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-C--A-LVFGRRLFLVGR---NAEFY 420 (480)
T ss_pred -CCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-e--E-EEECCEEEEECC---ceEEe
Confidence 1111111112223677888887653 4667887632222222222111111 1 1 123466556664 47789
Q ss_pred eCCCCeEE
Q 037288 449 SIRSGELV 456 (513)
Q Consensus 449 d~~~~~~~ 456 (513)
|..+.+-.
T Consensus 421 dp~~~~W~ 428 (480)
T PHA02790 421 CESSNTWT 428 (480)
T ss_pred cCCCCcEe
Confidence 88876644
No 422
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.80 E-value=39 Score=31.77 Aligned_cols=60 Identities=8% Similarity=0.016 Sum_probs=36.4
Q ss_pred CCCcccceeeeeccccCCCccEEEEecCCCCCCCCCcccccCceeEEeccccCcEEEEEEcCCCCEEEEEe
Q 037288 205 DGGSVRHALITSLGSETTGGSIYALNLDNPLDIGPNFSIIRRSTMHLVASFKCTVWTADFCTNPSQAVIGT 275 (513)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~g~~l~s~s 275 (513)
++|....+..+--......|.+.+|+....-+ .+-++..|.-.-..+.|.+||+.++.+.
T Consensus 121 fs~dG~~LYATEndfd~~rGViGvYd~r~~fq-----------rvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 121 FSPDGRLLYATENDFDPNRGVIGVYDAREGFQ-----------RVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred cCCCCcEEEeecCCCCCCCceEEEEecccccc-----------eecccccCCcCcceeEEecCCcEEEEeC
Confidence 33443333333333444567777787763322 2444666777778899999999988653
No 423
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=83.75 E-value=61 Score=34.02 Aligned_cols=64 Identities=16% Similarity=0.210 Sum_probs=43.9
Q ss_pred CCCEEEEEeCCeEEEEECCCCcEEEEeeeCCC--eEE----------EEEecCCcEEEEEeCCCeEEEEECCCCcccc
Q 037288 267 NPSQAVIGTNLGAAMVDMETGMASWVCRSKSD--ILA----------QQVIHSGNVVLCGFRNGAIVTVDVRKRQRGC 332 (513)
Q Consensus 267 ~g~~l~s~s~~~i~vwd~~~~~~~~~~~~~~~--V~~----------l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~ 332 (513)
++.+++++.++.|.-.|..+|+.++.+..... +.. +++ .+..|+.++.|+.+...|.++++...
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W 144 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVW 144 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEe
Confidence 45555555667788899999999888764321 211 122 23467778889999999999887654
No 424
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=83.08 E-value=7.2 Score=34.02 Aligned_cols=30 Identities=13% Similarity=0.103 Sum_probs=25.4
Q ss_pred CeEEEEEecCC------cEEEEEeCCCeEEEEECCC
Q 037288 298 DILAQQVIHSG------NVVLCGFRNGAIVTVDVRK 327 (513)
Q Consensus 298 ~V~~l~~~~~~------~~l~sg~~dg~i~iwd~~~ 327 (513)
.|.+++|+|.| -+|++.+.++.|.+|....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 68899999955 3899999999999998764
No 425
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=82.91 E-value=52 Score=32.63 Aligned_cols=68 Identities=15% Similarity=0.001 Sum_probs=39.4
Q ss_pred CcEEEEEEcCCCCEEEEEe-------------CCeEEEEECCC--Cc--EEEEee-eCCCeEEEEEecCCcEEEEEeCCC
Q 037288 257 CTVWTADFCTNPSQAVIGT-------------NLGAAMVDMET--GM--ASWVCR-SKSDILAQQVIHSGNVVLCGFRNG 318 (513)
Q Consensus 257 ~~V~~~~~s~~g~~l~s~s-------------~~~i~vwd~~~--~~--~~~~~~-~~~~V~~l~~~~~~~~l~sg~~dg 318 (513)
.....++|.++|+++++-. .+.|.+++-.. |+ ....+. .-.....+++.++| + +++..+.
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-l-yV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-V-YVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-E-EEeCCCe
Confidence 3556889999999887642 12576665432 33 223333 33346889999888 4 4444444
Q ss_pred eEEEEECC
Q 037288 319 AIVTVDVR 326 (513)
Q Consensus 319 ~i~iwd~~ 326 (513)
..++.|..
T Consensus 92 i~~~~d~~ 99 (367)
T TIGR02604 92 ILFLRDKD 99 (367)
T ss_pred EEEEeCCC
Confidence 33344553
No 426
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=82.08 E-value=13 Score=37.46 Aligned_cols=86 Identities=13% Similarity=0.086 Sum_probs=56.4
Q ss_pred ceeEEeccccCcEEEEEEcCCCCEEEEEeC-CeEEEEECCCCcEEEEeeeCC--CeEEEEEecCC---------------
Q 037288 247 STMHLVASFKCTVWTADFCTNPSQAVIGTN-LGAAMVDMETGMASWVCRSKS--DILAQQVIHSG--------------- 308 (513)
Q Consensus 247 ~~~~~~~~h~~~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~~~~~~~~~~~--~V~~l~~~~~~--------------- 308 (513)
+....+......+.++..+|++++.|+..+ +.|.++|+.++..++..+.-. .+.-+.....+
T Consensus 298 ~~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~ 377 (415)
T PF14655_consen 298 PMRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSR 377 (415)
T ss_pred ceEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCc
Confidence 345556667778999999999988887633 459999999987666554211 11111111110
Q ss_pred ---cEEEEEeCCCeEEEEECCCCcccc
Q 037288 309 ---NVVLCGFRNGAIVTVDVRKRQRGC 332 (513)
Q Consensus 309 ---~~l~sg~~dg~i~iwd~~~~~~~~ 332 (513)
-+++-+-.-|.|.||+++.+..+.
T Consensus 378 ~~l~LvIyaprRg~lEvW~~~~g~Rv~ 404 (415)
T PF14655_consen 378 FALFLVIYAPRRGILEVWSMRQGPRVA 404 (415)
T ss_pred ceEEEEEEeccCCeEEEEecCCCCEEE
Confidence 134555678999999999987644
No 427
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.90 E-value=78 Score=33.94 Aligned_cols=62 Identities=18% Similarity=0.292 Sum_probs=45.2
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCC-CCCeEEEEEcCCCceEEeeCCCee
Q 037288 425 IQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFS-NSVPSAVCWRTQRSMGPQIEGKIH 486 (513)
Q Consensus 425 ~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~-~~~v~~v~~~p~~~~~~t~~~~~~ 486 (513)
..+.+||+.++|+-=..+|.|.+-+....+.+.++... ..+.-.++|..+..++.+-...+.
T Consensus 220 ~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~WcgndaVvl~~e~~l~ 282 (829)
T KOG2280|consen 220 VKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGNDAVVLSWEVNLM 282 (829)
T ss_pred EEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCCceEEEEeeeEE
Confidence 44788999999999899999999999888888776522 233447888877655555444443
No 428
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=81.82 E-value=28 Score=28.71 Aligned_cols=77 Identities=14% Similarity=0.121 Sum_probs=52.0
Q ss_pred eccccCcEEEEEEcC-----CCCEEEEEeCCeEEEEECCCCcEEEEeeeCCCeEEEEEec----CCcEEEEEeCCCeEEE
Q 037288 252 VASFKCTVWTADFCT-----NPSQAVIGTNLGAAMVDMETGMASWVCRSKSDILAQQVIH----SGNVVLCGFRNGAIVT 322 (513)
Q Consensus 252 ~~~h~~~V~~~~~s~-----~g~~l~s~s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~----~~~~l~sg~~dg~i~i 322 (513)
+..-...|.+++--+ +...|+.|+...+.+||++....+....-+..|.++.+-. +..++++| .+..|.-
T Consensus 43 ~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~G 121 (136)
T PF14781_consen 43 FLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQG 121 (136)
T ss_pred EEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccCchhhhhhCccceeEEEEEecCCCCCcEEEEC-ceEEEEE
Confidence 333445677765544 4558889999999999999887665555667788887753 23556665 4567777
Q ss_pred EECCCCc
Q 037288 323 VDVRKRQ 329 (513)
Q Consensus 323 wd~~~~~ 329 (513)
||....+
T Consensus 122 fd~~G~e 128 (136)
T PF14781_consen 122 FDYEGNE 128 (136)
T ss_pred eCCCCcE
Confidence 7766544
No 429
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=81.59 E-value=46 Score=31.08 Aligned_cols=127 Identities=12% Similarity=0.021 Sum_probs=71.8
Q ss_pred EEEEeeeCCC--eEEEEEecCCcEEEEEeCCC--eEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCc
Q 037288 289 ASWVCRSKSD--ILAQQVIHSGNVVLCGFRNG--AIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKAN 364 (513)
Q Consensus 289 ~~~~~~~~~~--V~~l~~~~~~~~l~sg~~dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~ 364 (513)
.+..+.|... ...+.|..+|.++-+.+.-| .|+.+|+.+++... ...+...
T Consensus 35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~-~~~l~~~------------------------ 89 (264)
T PF05096_consen 35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQ-SVPLPPR------------------------ 89 (264)
T ss_dssp EEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEE-EEE-TTT------------------------
T ss_pred EEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEE-EEECCcc------------------------
Confidence 4556667665 57788877888888888766 78889998876432 1111110
Q ss_pred ccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCc
Q 037288 365 IWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCK 444 (513)
Q Consensus 365 ~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~ 444 (513)
--...+..+ +++.+...=.++...+||.. ....+.++.- .+.-.. ++ .+|+.|+.+.....
T Consensus 90 ----------~FgEGit~~--~d~l~qLTWk~~~~f~yd~~--tl~~~~~~~y-~~EGWG--Lt--~dg~~Li~SDGS~~ 150 (264)
T PF05096_consen 90 ----------YFGEGITIL--GDKLYQLTWKEGTGFVYDPN--TLKKIGTFPY-PGEGWG--LT--SDGKRLIMSDGSSR 150 (264)
T ss_dssp ------------EEEEEEE--TTEEEEEESSSSEEEEEETT--TTEEEEEEE--SSS--E--EE--ECSSCEEEE-SSSE
T ss_pred ----------ccceeEEEE--CCEEEEEEecCCeEEEEccc--cceEEEEEec-CCcceE--EE--cCCCEEEEECCccc
Confidence 000111111 34444445568899999986 4446666652 233233 55 45666666655778
Q ss_pred EEEEeCCCCeEEEEe
Q 037288 445 LRIWSIRSGELVFED 459 (513)
Q Consensus 445 v~vwd~~~~~~~~~~ 459 (513)
++++|..+.+....+
T Consensus 151 L~~~dP~~f~~~~~i 165 (264)
T PF05096_consen 151 LYFLDPETFKEVRTI 165 (264)
T ss_dssp EEEE-TTT-SEEEEE
T ss_pred eEEECCcccceEEEE
Confidence 999998877665554
No 430
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.58 E-value=32 Score=35.04 Aligned_cols=76 Identities=12% Similarity=0.107 Sum_probs=51.5
Q ss_pred cCcEEEEEEcCCCCEEEEEeCCeEEEEEC----------CCCcEEEEee------------eCCCeEEEEEecCC---cE
Q 037288 256 KCTVWTADFCTNPSQAVIGTNLGAAMVDM----------ETGMASWVCR------------SKSDILAQQVIHSG---NV 310 (513)
Q Consensus 256 ~~~V~~~~~s~~g~~l~s~s~~~i~vwd~----------~~~~~~~~~~------------~~~~V~~l~~~~~~---~~ 310 (513)
.-.|..+..++.|..++..+-++|.|..+ +.|+.....+ ..-.+...+|+|+. ..
T Consensus 103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~h 182 (741)
T KOG4460|consen 103 LFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPH 182 (741)
T ss_pred eEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCce
Confidence 35789999999999988666556544433 3443222111 11236778899976 56
Q ss_pred EEEEeCCCeEEEEECCCCccc
Q 037288 311 VLCGFRNGAIVTVDVRKRQRG 331 (513)
Q Consensus 311 l~sg~~dg~i~iwd~~~~~~~ 331 (513)
|..-+.|..|++||+......
T Consensus 183 L~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 183 LVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred EEEEecCcEEEEEecCCcchh
Confidence 777778999999999877653
No 431
>cd00109 KU BPTI/Kunitz family of serine protease inhibitors; Structure is a disulfide rich alpha+beta fold. BPTI (bovine pancreatic trypsin inhibitor) is an extensively studied model structure.
Probab=79.96 E-value=0.71 Score=31.36 Aligned_cols=17 Identities=35% Similarity=0.804 Sum_probs=14.2
Q ss_pred CCCccccccccCccccc
Q 037288 4 ELPGFYYDAEKNRYFPI 20 (513)
Q Consensus 4 ~~pg~y~d~~~~~yf~~ 20 (513)
++|+||||+++++=-+.
T Consensus 15 ~~~~~~yd~~~~~C~~f 31 (54)
T cd00109 15 YIPRYYYDATTKQCEPF 31 (54)
T ss_pred CccEEEEeCCCCcccee
Confidence 68999999999986554
No 432
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.82 E-value=45 Score=31.38 Aligned_cols=96 Identities=15% Similarity=0.090 Sum_probs=62.4
Q ss_pred EEEEEecCCe-EEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCC-eEEEEecC
Q 037288 389 YFLASSMDGT-VKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGED-----CKLRIWSIRSG-ELVFEDKF 461 (513)
Q Consensus 389 ~l~s~s~dg~-i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~D-----g~v~vwd~~~~-~~~~~~~~ 461 (513)
-++.+-.-|+ ..++|.. ......++....+....=.=.|||||.+|++.-.| |.|-|||.+.+ +.+.++..
T Consensus 82 avafARrPGtf~~vfD~~--~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t 159 (366)
T COG3490 82 AVAFARRPGTFAMVFDPN--GAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFST 159 (366)
T ss_pred eEEEEecCCceEEEECCC--CCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceeccccc
Confidence 3444444343 4577775 33344444333333222224689999999876443 68999999854 45566777
Q ss_pred CCCCeEEEEEcCCCceEEeeCCCee
Q 037288 462 SNSVPSAVCWRTQRSMGPQIEGKIH 486 (513)
Q Consensus 462 ~~~~v~~v~~~p~~~~~~t~~~~~~ 486 (513)
|.-....+.|.+++..++-.++++.
T Consensus 160 ~GiGpHev~lm~DGrtlvvanGGIe 184 (366)
T COG3490 160 HGIGPHEVTLMADGRTLVVANGGIE 184 (366)
T ss_pred CCcCcceeEEecCCcEEEEeCCcee
Confidence 7777889999999888888888766
No 433
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=79.03 E-value=16 Score=33.34 Aligned_cols=64 Identities=16% Similarity=0.063 Sum_probs=44.6
Q ss_pred CCCCEEE-EEeCCeEEEEECCCCcEEEEe---------------eeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCc
Q 037288 266 TNPSQAV-IGTNLGAAMVDMETGMASWVC---------------RSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQ 329 (513)
Q Consensus 266 ~~g~~l~-s~s~~~i~vwd~~~~~~~~~~---------------~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~ 329 (513)
.++.++. ...++.+++||+.+++....- .....|..+.++.+|.-|++- .+|..+.||..-..
T Consensus 20 ~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-sng~~y~y~~~L~~ 98 (219)
T PF07569_consen 20 CNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-SNGDSYSYSPDLGC 98 (219)
T ss_pred eCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-eCCCEEEeccccce
Confidence 3555554 556777999999988643321 123458889999888776665 46889999887665
Q ss_pred c
Q 037288 330 R 330 (513)
Q Consensus 330 ~ 330 (513)
.
T Consensus 99 W 99 (219)
T PF07569_consen 99 W 99 (219)
T ss_pred e
Confidence 4
No 434
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=78.14 E-value=58 Score=30.15 Aligned_cols=74 Identities=8% Similarity=0.013 Sum_probs=43.4
Q ss_pred cCCCCEEEEEecCC-eEEEEecCCCCccceE--Eec-----CCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE
Q 037288 384 QLYDQYFLASSMDG-TVKLYDHRLTTRGAVQ--SYE-----GHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGEL 455 (513)
Q Consensus 384 ~~~~~~l~s~s~dg-~i~lwd~~~~~~~~~~--~~~-----~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~ 455 (513)
-+||+.|+.|+.+. +..+|.-......... -+. ...+.... +..-|+|++++.+..+ -.|||..+.+.
T Consensus 126 L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~--~~llPdG~lFi~an~~--s~i~d~~~n~v 201 (243)
T PF07250_consen 126 LPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPF--VHLLPDGNLFIFANRG--SIIYDYKTNTV 201 (243)
T ss_pred CCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCce--EEEcCCCCEEEEEcCC--cEEEeCCCCeE
Confidence 36899999988764 3445554211111111 111 11222223 5567999999988865 45779988888
Q ss_pred EEEecC
Q 037288 456 VFEDKF 461 (513)
Q Consensus 456 ~~~~~~ 461 (513)
++.+..
T Consensus 202 ~~~lP~ 207 (243)
T PF07250_consen 202 VRTLPD 207 (243)
T ss_pred EeeCCC
Confidence 777643
No 435
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=78.10 E-value=85 Score=32.08 Aligned_cols=32 Identities=13% Similarity=0.025 Sum_probs=23.7
Q ss_pred CCeEEEEEecCCcEEEEEeCCCeEEEEECCCC
Q 037288 297 SDILAQQVIHSGNVVLCGFRNGAIVTVDVRKR 328 (513)
Q Consensus 297 ~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~ 328 (513)
..-+.|+|.|||++|++--..|.|++++....
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~ 61 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETG 61 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCC
Confidence 34678899999987766544699999876544
No 436
>PHA02714 CD-30-like protein; Provisional
Probab=77.12 E-value=1 Score=33.78 Aligned_cols=16 Identities=13% Similarity=0.250 Sum_probs=14.3
Q ss_pred CCccccccccCccccc
Q 037288 5 LPGFYYDAEKNRYFPI 20 (513)
Q Consensus 5 ~pg~y~d~~~~~yf~~ 20 (513)
.|+||||||..|=|.-
T Consensus 25 ~~dYY~Dpe~g~CtAC 40 (110)
T PHA02714 25 PKDYYLEPEDGLCTAC 40 (110)
T ss_pred CCcccccCCCCceeee
Confidence 5899999999999965
No 437
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=76.27 E-value=80 Score=30.82 Aligned_cols=49 Identities=12% Similarity=0.020 Sum_probs=34.0
Q ss_pred cEEEEEEcCCCCEEEEEeCCeEEEEECCCCcE---EEEee-----eCCCeEEEEEecC
Q 037288 258 TVWTADFCTNPSQAVIGTNLGAAMVDMETGMA---SWVCR-----SKSDILAQQVIHS 307 (513)
Q Consensus 258 ~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~---~~~~~-----~~~~V~~l~~~~~ 307 (513)
.-+.++|.|||+++++-..+.|++++ ..+.. +.... .......++|+|+
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPD 59 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccc
Confidence 45789999999999887878899998 44443 22221 2345799999995
No 438
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=75.73 E-value=95 Score=31.40 Aligned_cols=30 Identities=7% Similarity=0.072 Sum_probs=26.7
Q ss_pred CcEEEEEEcCCCCEEEEEeCCeEEEEECCC
Q 037288 257 CTVWTADFCTNPSQAVIGTNLGAAMVDMET 286 (513)
Q Consensus 257 ~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~ 286 (513)
+.|-++.|..+..+++...++.++++|+..
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G 110 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYDLFG 110 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEeCCC
Confidence 789999999988888888999999999873
No 439
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=75.72 E-value=36 Score=33.23 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=21.7
Q ss_pred CeEEEEEecCCcEEEEEeCCCeEEEEE
Q 037288 298 DILAQQVIHSGNVVLCGFRNGAIVTVD 324 (513)
Q Consensus 298 ~V~~l~~~~~~~~l~sg~~dg~i~iwd 324 (513)
..++|+|.|||.++++ ...|.|++++
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~ 28 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD 28 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe
Confidence 3578999999987665 5799999999
No 440
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=74.84 E-value=47 Score=27.43 Aligned_cols=125 Identities=14% Similarity=0.249 Sum_probs=69.0
Q ss_pred EEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEE
Q 037288 301 AQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCL 380 (513)
Q Consensus 301 ~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~ 380 (513)
.-.|.....-|++++.-|+|.|++........ . ....+|.-+.+ ...++++
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~---~--~~~~~i~~LNi------------------------n~~ital 53 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRT---G--RQDSDISFLNI------------------------NQEITAL 53 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCcccccc---c--cccCceeEEEC------------------------CCceEEE
Confidence 34565556678899999999999987654321 0 02333333333 3344443
Q ss_pred EE--E--cCCCCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEE-EEcC-CCCEEEEEeCCCcEEEEeCCCCe
Q 037288 381 QS--L--QLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQL-GVDQ-SERFVMSGGEDCKLRIWSIRSGE 454 (513)
Q Consensus 381 ~~--~--~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~-~~s~-~g~~l~sg~~Dg~v~vwd~~~~~ 454 (513)
.+ + ..+...|+.|+.. .+..||+. ...-+. ++.-.+.+.++.+ .+.. +..+++. +.++.|.-||....+
T Consensus 54 aaG~l~~~~~~D~LliGt~t-~llaYDV~--~N~d~F-yke~~DGvn~i~~g~~~~~~~~l~iv-GGncsi~Gfd~~G~e 128 (136)
T PF14781_consen 54 AAGRLKPDDGRDCLLIGTQT-SLLAYDVE--NNSDLF-YKEVPDGVNAIVIGKLGDIPSPLVIV-GGNCSIQGFDYEGNE 128 (136)
T ss_pred EEEecCCCCCcCEEEEeccc-eEEEEEcc--cCchhh-hhhCccceeEEEEEecCCCCCcEEEE-CceEEEEEeCCCCcE
Confidence 22 2 1235567777755 79999996 333222 2223344545322 2222 2344444 447888888876666
Q ss_pred EEEEe
Q 037288 455 LVFED 459 (513)
Q Consensus 455 ~~~~~ 459 (513)
...+.
T Consensus 129 ~fWtV 133 (136)
T PF14781_consen 129 IFWTV 133 (136)
T ss_pred EEEEe
Confidence 65443
No 441
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=73.87 E-value=37 Score=25.83 Aligned_cols=39 Identities=10% Similarity=-0.135 Sum_probs=28.6
Q ss_pred CCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEE
Q 037288 276 NLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCG 314 (513)
Q Consensus 276 ~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg 314 (513)
++.+.-||..+++...+...-.--..|++++|+..|+.+
T Consensus 36 ~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 36 TGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp -EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEE
T ss_pred CcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEE
Confidence 355888999999876666655567899999999866555
No 442
>PRK10115 protease 2; Provisional
Probab=73.74 E-value=1.4e+02 Score=32.52 Aligned_cols=112 Identities=7% Similarity=-0.070 Sum_probs=60.4
Q ss_pred eEEEEEecCCcEEEEEeC-----CCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeec
Q 037288 299 ILAQQVIHSGNVVLCGFR-----NGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFM 373 (513)
Q Consensus 299 V~~l~~~~~~~~l~sg~~-----dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~ 373 (513)
+..+.++|||++|+.+.. ...|++.|+.++.... ..+.+
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~--~~i~~---------------------------------- 172 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYP--ELLDN---------------------------------- 172 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCC--ccccC----------------------------------
Confidence 567788999987776532 2467788887665221 00100
Q ss_pred CCCceEEEEEcCCCCEEEEEecC------CeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeC---CCc
Q 037288 374 PSSISCLQSLQLYDQYFLASSMD------GTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGE---DCK 444 (513)
Q Consensus 374 ~~~v~~~~~~~~~~~~l~s~s~d------g~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~---Dg~ 444 (513)
+.....|.++++.|+....+ ..|..+++..........+........ +....+.++++++..+. ++.
T Consensus 173 ---~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~-~~~~~s~d~~~l~i~~~~~~~~~ 248 (686)
T PRK10115 173 ---VEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFY-VSLHKTTSKHYVVIHLASATTSE 248 (686)
T ss_pred ---cceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEE-EEEEEcCCCCEEEEEEECCcccc
Confidence 00113566677766655442 356777776321123333443333322 23344558887664433 457
Q ss_pred EEEEeC
Q 037288 445 LRIWSI 450 (513)
Q Consensus 445 v~vwd~ 450 (513)
+.+++.
T Consensus 249 ~~l~~~ 254 (686)
T PRK10115 249 VLLLDA 254 (686)
T ss_pred EEEEEC
Confidence 888884
No 443
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=72.86 E-value=82 Score=32.85 Aligned_cols=77 Identities=6% Similarity=-0.086 Sum_probs=46.6
Q ss_pred eccccCcEEEEEEcCCC-----CEEEEEeCCeEEEEECCC-----CcEE--EEeee--CCCe--EEEEEecCCcEEEEEe
Q 037288 252 VASFKCTVWTADFCTNP-----SQAVIGTNLGAAMVDMET-----GMAS--WVCRS--KSDI--LAQQVIHSGNVVLCGF 315 (513)
Q Consensus 252 ~~~h~~~V~~~~~s~~g-----~~l~s~s~~~i~vwd~~~-----~~~~--~~~~~--~~~V--~~l~~~~~~~~l~sg~ 315 (513)
.-|.-..|..+.|.|-+ .+||+-....|.||.+.- ++.+ .+... .-+| ..+-|+|...+|++-.
T Consensus 52 viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT 131 (671)
T PF15390_consen 52 VIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLT 131 (671)
T ss_pred EeeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEe
Confidence 34455789999999842 467666667799998752 2211 11111 1122 4566899888777766
Q ss_pred CCCeEEEEECCCC
Q 037288 316 RNGAIVTVDVRKR 328 (513)
Q Consensus 316 ~dg~i~iwd~~~~ 328 (513)
....-.+++++..
T Consensus 132 ~~dvSV~~sV~~d 144 (671)
T PF15390_consen 132 ARDVSVLPSVHCD 144 (671)
T ss_pred cCceeEeeeeeeC
Confidence 5554455566544
No 444
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=72.46 E-value=78 Score=28.94 Aligned_cols=142 Identities=9% Similarity=-0.126 Sum_probs=78.1
Q ss_pred cCcEEEEEEcCCCCEEEEE-eCCe---------EEEEECCCCcEEEEeeeCCCeEEEEEecCCc-EEEEEeCCCeEEEEE
Q 037288 256 KCTVWTADFCTNPSQAVIG-TNLG---------AAMVDMETGMASWVCRSKSDILAQQVIHSGN-VVLCGFRNGAIVTVD 324 (513)
Q Consensus 256 ~~~V~~~~~s~~g~~l~s~-s~~~---------i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~-~l~sg~~dg~i~iwd 324 (513)
....++-..+|+|++++-. ++-+ ++.|-.. ++.......-.--..++|+.+.+ +.++-+.+-+|..||
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~-h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~d 186 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG-HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYD 186 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccC-CCceeeehhccCCccccccccCcEEEEEccCceEEeeee
Confidence 3456677778999996532 3211 3333332 22222222222236788887775 445556788888888
Q ss_pred CC--CCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEE
Q 037288 325 VR--KRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLY 402 (513)
Q Consensus 325 ~~--~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lw 402 (513)
.. ++.... ...|. ++++.+ .+.+ ..-.-.++..+|+++++.-..++|...
T Consensus 187 yd~~tG~~sn--------r~~i~-------------dlrk~~-----~~e~--~~PDGm~ID~eG~L~Va~~ng~~V~~~ 238 (310)
T KOG4499|consen 187 YDCPTGDLSN--------RKVIF-------------DLRKSQ-----PFES--LEPDGMTIDTEGNLYVATFNGGTVQKV 238 (310)
T ss_pred cCCCcccccC--------cceeE-------------EeccCC-----CcCC--CCCCcceEccCCcEEEEEecCcEEEEE
Confidence 43 332211 01111 111110 0000 011112345689999988889999999
Q ss_pred ecCCCCccceEEecCCCCceeEEEEEEc
Q 037288 403 DHRLTTRGAVQSYEGHVNSHTRIQLGVD 430 (513)
Q Consensus 403 d~~~~~~~~~~~~~~h~~~v~~~~~~~s 430 (513)
|.. ..+.+.++.-.+..+++ ++|-
T Consensus 239 dp~--tGK~L~eiklPt~qits--ccFg 262 (310)
T KOG4499|consen 239 DPT--TGKILLEIKLPTPQITS--CCFG 262 (310)
T ss_pred CCC--CCcEEEEEEcCCCceEE--EEec
Confidence 986 45578888877888877 6664
No 445
>PLN02153 epithiospecifier protein
Probab=72.32 E-value=1e+02 Score=30.16 Aligned_cols=24 Identities=13% Similarity=0.058 Sum_probs=16.3
Q ss_pred CCCEEEEEeCC--------------CcEEEEeCCCCeE
Q 037288 432 SERFVMSGGED--------------CKLRIWSIRSGEL 455 (513)
Q Consensus 432 ~g~~l~sg~~D--------------g~v~vwd~~~~~~ 455 (513)
++++++.|+.. ..|..+|+.+.+-
T Consensus 251 ~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W 288 (341)
T PLN02153 251 GKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVW 288 (341)
T ss_pred CCEEEEECcccCCccccccccccccccEEEEEcCccEE
Confidence 46777888752 2578888876654
No 446
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=71.58 E-value=21 Score=22.07 Aligned_cols=39 Identities=8% Similarity=0.006 Sum_probs=24.0
Q ss_pred CCCCEEEEE--eCCeEEEEECCCCcEEEEeeeCCCeEEEEE
Q 037288 266 TNPSQAVIG--TNLGAAMVDMETGMASWVCRSKSDILAQQV 304 (513)
Q Consensus 266 ~~g~~l~s~--s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~ 304 (513)
|+++.|.++ .++.|.++|..+++.+..+.-...-..+.|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 466655544 356799999988887766654333333333
No 447
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.16 E-value=96 Score=29.42 Aligned_cols=154 Identities=8% Similarity=-0.001 Sum_probs=84.2
Q ss_pred eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecC
Q 037288 295 SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMP 374 (513)
Q Consensus 295 ~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~ 374 (513)
-...|.++.|+|+.+.|++......-.++=..+++... ...+.+ +..+
T Consensus 84 ~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdlir-tiPL~g-------------------------------~~Dp 131 (316)
T COG3204 84 ETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIR-TIPLTG-------------------------------FSDP 131 (316)
T ss_pred ccccccceeeCCCcceEEEecCCCceEEEEecCCceEE-Eecccc-------------------------------cCCh
Confidence 34559999999999888887777666666444454322 111111 1112
Q ss_pred CCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCcc--------ceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEE
Q 037288 375 SSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRG--------AVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLR 446 (513)
Q Consensus 375 ~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~--------~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~ 446 (513)
+.|. +-.++++.++--.++.+.++.+.....- ++............ ++|+|.+..|+.+-+-.-+.
T Consensus 132 E~Ie----yig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEG--lA~d~~~~~l~~aKEr~P~~ 205 (316)
T COG3204 132 ETIE----YIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEG--LAWDPVDHRLFVAKERNPIG 205 (316)
T ss_pred hHeE----EecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCcee--eecCCCCceEEEEEccCCcE
Confidence 2222 2234555555555777877766521110 11111111223344 89999998888888888888
Q ss_pred EEeCCCCe-EEEE--ecCC-------CCCeEEEEEcCC--CceEEeeCCCee
Q 037288 447 IWSIRSGE-LVFE--DKFS-------NSVPSAVCWRTQ--RSMGPQIEGKIH 486 (513)
Q Consensus 447 vwd~~~~~-~~~~--~~~~-------~~~v~~v~~~p~--~~~~~t~~~~~~ 486 (513)
||.+..+. .+.. ...+ -..|.++.|++. ..++.+.+...-
T Consensus 206 I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l 257 (316)
T COG3204 206 IFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRL 257 (316)
T ss_pred EEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceE
Confidence 88776433 1111 1111 124778888866 445555555444
No 448
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=70.99 E-value=40 Score=34.44 Aligned_cols=89 Identities=9% Similarity=0.041 Sum_probs=49.9
Q ss_pred CeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCC--eEEEeEeecccCcccceeEeecCC
Q 037288 298 DILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRND--RVTNEQWFELKANIWPSHTTFMPS 375 (513)
Q Consensus 298 ~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~--~~~s~~w~~~~~~~~~~~~~~~~~ 375 (513)
.|.-+..++.|..++-.+-+|.+.++=.+..... ..+.....-|.|-.+.- ++++.+ ..+.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~---s~~eDgk~~v~CRt~~i~~~~ftss-----~~lt--------- 167 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKN---SEFEDGKSTVNCRTTPVAERFFTSS-----TSLT--------- 167 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCcc---ceecCCCceEEEEeecccceeeccC-----Ccee---------
Confidence 3667778899999998889998877654332221 13333334455533321 111111 0000
Q ss_pred CceEEEEEcCC---CCEEEEEecCCeEEEEecC
Q 037288 376 SISCLQSLQLY---DQYFLASSMDGTVKLYDHR 405 (513)
Q Consensus 376 ~v~~~~~~~~~---~~~l~s~s~dg~i~lwd~~ 405 (513)
...+.|+|+ ...|+.-+.|..|++||+.
T Consensus 168 --l~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS 198 (741)
T KOG4460|consen 168 --LKQAAWHPSSILDPHLVLLTSDNVIRIYSLS 198 (741)
T ss_pred --eeeccccCCccCCceEEEEecCcEEEEEecC
Confidence 011344554 3567777889999999986
No 449
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.74 E-value=1.2e+02 Score=30.53 Aligned_cols=69 Identities=10% Similarity=0.013 Sum_probs=43.2
Q ss_pred EEEEcCCCCEEEEEeCCeEEEEECCCC---cEE-EEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCc
Q 037288 261 TADFCTNPSQAVIGTNLGAAMVDMETG---MAS-WVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQ 329 (513)
Q Consensus 261 ~~~~s~~g~~l~s~s~~~i~vwd~~~~---~~~-~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~ 329 (513)
.+-|...++.+.+...+++.-|-+... -++ .-....++|.++.|++|.+.||+--.|.+|.+++....+
T Consensus 27 gvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~ 99 (657)
T KOG2377|consen 27 GVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDN 99 (657)
T ss_pred ceeeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCc
Confidence 344444344444444444444443321 111 222356789999999999999999999999999875433
No 450
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=70.37 E-value=17 Score=36.15 Aligned_cols=161 Identities=13% Similarity=0.037 Sum_probs=86.9
Q ss_pred eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCcccccccccccc-CcCeEEEeeCCeEEEeEeecccCcccceeEeec
Q 037288 295 SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRH-RIPYSRLQRNDRVTNEQWFELKANIWPSHTTFM 373 (513)
Q Consensus 295 ~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h-~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~ 373 (513)
-.++|..+-..|||+.++.-+. .++.++++.+..... +++... .+.+.+
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~--rkl~~dspg~~~~--------------------------- 268 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQI--RKLVDDSPGDSRH--------------------------- 268 (733)
T ss_pred CccchHhhEECCCCCEEEEecC-CeEEEEeecccccch--hhhhhcCCCchHH---------------------------
Confidence 3456888889999998877765 788999987664321 111110 010000
Q ss_pred CCCceEEEEEcCCCCEEEEEecCCeEEEE-ecCCCCcc---ceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 037288 374 PSSISCLQSLQLYDQYFLASSMDGTVKLY-DHRLTTRG---AVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWS 449 (513)
Q Consensus 374 ~~~v~~~~~~~~~~~~l~s~s~dg~i~lw-d~~~~~~~---~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd 449 (513)
.++....+-..|.-+++++.||-|.-| |.|..... .++.++-...++.. +.-..+-+-+++-..+|++.++.
T Consensus 269 --~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~--l~pe~~rkgF~~l~~~G~L~~f~ 344 (733)
T COG4590 269 --QVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQF--LLPETNRKGFYSLYRNGTLQSFY 344 (733)
T ss_pred --HHHHHHHHHhCceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCccccee--eccccccceEEEEcCCCceeeee
Confidence 000000011246668888999998877 66521111 12222222223222 22122334577778889998887
Q ss_pred CCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCCeeeeec
Q 037288 450 IRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIHEEFD 490 (513)
Q Consensus 450 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~~~~~ 490 (513)
....+++-....- ..+.-++++|+...++.-+.+-.+.+.
T Consensus 345 st~~~~lL~~~~~-~~~~~~~~Sp~~~~Ll~e~~gki~~~~ 384 (733)
T COG4590 345 STSEKLLLFERAY-QAPQLVAMSPNQAYLLSEDQGKIRLAQ 384 (733)
T ss_pred cccCcceehhhhh-cCcceeeeCcccchheeecCCceEEEE
Confidence 6555544432222 246788999997666655555443333
No 451
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=70.23 E-value=11 Score=21.99 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=22.1
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEe
Q 037288 433 ERFVMSGGEDCKLRIWSIRSGELVFED 459 (513)
Q Consensus 433 g~~l~sg~~Dg~v~vwd~~~~~~~~~~ 459 (513)
+..++.++.+|.+..+|..+|+.+-.+
T Consensus 6 ~~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 6 DGTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CCEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 346888889999999999999887653
No 452
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=70.11 E-value=48 Score=33.77 Aligned_cols=93 Identities=10% Similarity=0.072 Sum_probs=51.9
Q ss_pred EEEecCCeEEEEecCCCCcc-ceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE-EecCCCCCeEE
Q 037288 391 LASSMDGTVKLYDHRLTTRG-AVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVF-EDKFSNSVPSA 468 (513)
Q Consensus 391 ~s~s~dg~i~lwd~~~~~~~-~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~-~~~~~~~~v~~ 468 (513)
++|-.+..|.-.|.|....+ .+...+....... .+....-...+++.||..|.|++||- -|.... .+.+-+..|..
T Consensus 531 lvGlS~~svFrIDPR~~gNKi~v~esKdY~tKn~-Fss~~tTesGyIa~as~kGDirLyDR-ig~rAKtalP~lG~aIk~ 608 (776)
T COG5167 531 LVGLSDYSVFRIDPRARGNKIKVVESKDYKTKNK-FSSGMTTESGYIAAASRKGDIRLYDR-IGKRAKTALPGLGDAIKH 608 (776)
T ss_pred EEeecccceEEecccccCCceeeeeehhcccccc-ccccccccCceEEEecCCCceeeehh-hcchhhhcCcccccceee
Confidence 44555677777888732211 2222222211110 11122234569999999999999994 333333 24455666777
Q ss_pred EEEcCC-CceEEeeCCCe
Q 037288 469 VCWRTQ-RSMGPQIEGKI 485 (513)
Q Consensus 469 v~~~p~-~~~~~t~~~~~ 485 (513)
+....+ ..++|||..-+
T Consensus 609 idvta~Gk~ilaTCk~yl 626 (776)
T COG5167 609 IDVTANGKHILATCKNYL 626 (776)
T ss_pred eEeecCCcEEEEeecceE
Confidence 777777 45667666443
No 453
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=67.85 E-value=1.2e+02 Score=29.30 Aligned_cols=24 Identities=8% Similarity=0.178 Sum_probs=16.0
Q ss_pred CCcEEEEEeC-----CCeEEEEECCCCcc
Q 037288 307 SGNVVLCGFR-----NGAIVTVDVRKRQR 330 (513)
Q Consensus 307 ~~~~l~sg~~-----dg~i~iwd~~~~~~ 330 (513)
++.+.+.|+. ...+..||+.+.+.
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W 151 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEW 151 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCe
Confidence 5677777764 24677788876654
No 454
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=65.56 E-value=2.2e+02 Score=31.52 Aligned_cols=72 Identities=6% Similarity=-0.091 Sum_probs=47.9
Q ss_pred cccCcEEEEEEc---C----CCCEEEEEeCCeEEEEEC------CCC---------cEEEEee----eCCCeEEEEEecC
Q 037288 254 SFKCTVWTADFC---T----NPSQAVIGTNLGAAMVDM------ETG---------MASWVCR----SKSDILAQQVIHS 307 (513)
Q Consensus 254 ~h~~~V~~~~~s---~----~g~~l~s~s~~~i~vwd~------~~~---------~~~~~~~----~~~~V~~l~~~~~ 307 (513)
....+|..|.|. . ..++|++=....+.|+.. ... .++..+. ...+...++|+|.
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 456789999998 2 224777666666777661 111 1222232 2345788999984
Q ss_pred C-cEEEEEeCCCeEEEEEC
Q 037288 308 G-NVVLCGFRNGAIVTVDV 325 (513)
Q Consensus 308 ~-~~l~sg~~dg~i~iwd~ 325 (513)
. ..||.-...|...|||+
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i 175 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDI 175 (765)
T ss_pred ccceEEEEeccCcEEEEEe
Confidence 4 68999999999999999
No 455
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=64.46 E-value=27 Score=31.41 Aligned_cols=53 Identities=9% Similarity=0.151 Sum_probs=41.8
Q ss_pred CEEEEEeCCCcEEEEeCC--CCeEEEEecCCCCCeEEEEEcCCCceEEeeCCCeee
Q 037288 434 RFVMSGGEDCKLRIWSIR--SGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGKIHE 487 (513)
Q Consensus 434 ~~l~sg~~Dg~v~vwd~~--~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~~~~ 487 (513)
..|+.+...+.|.+|++. ..+++.++..- +.|..+.++..+.+++|-+.+...
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~ 83 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKR 83 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCC
Confidence 455454667889999988 45677777664 678999999999999999988775
No 456
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=64.38 E-value=95 Score=35.56 Aligned_cols=129 Identities=12% Similarity=0.145 Sum_probs=72.6
Q ss_pred eCCCeEEEEECCCCccccccccccccCcCeEEEeeC--------C--------------eEEEeEeecccCcccce---e
Q 037288 315 FRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRN--------D--------------RVTNEQWFELKANIWPS---H 369 (513)
Q Consensus 315 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~--------~--------------~~~s~~w~~~~~~~~~~---~ 369 (513)
+.|..+.+|+..+.... ..+.+-...|..|..- | .++.-+++...+..... .
T Consensus 96 TiDn~L~lWny~~~~e~---~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~ 172 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNEL---AEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSF 172 (1311)
T ss_pred EeCCeEEEEEcCCCCcc---ccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccce
Confidence 46889999999885543 3455555555544421 1 11111244433332211 1
Q ss_pred Eeec-CCCceEEEEEcCCCCEEEEEecCCeEEEEecCCC---------------Ccc-------ceEEec-CCCCceeEE
Q 037288 370 TTFM-PSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLT---------------TRG-------AVQSYE-GHVNSHTRI 425 (513)
Q Consensus 370 ~~~~-~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~---------------~~~-------~~~~~~-~h~~~v~~~ 425 (513)
.+.. +..+.|+. ...+|+.|++|- || .+|.+-.. ... .+..+. .+..+|..
T Consensus 173 ~i~~dg~~V~~I~-~t~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~q- 247 (1311)
T KOG1900|consen 173 KISVDGVSVNCIT-YTENGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQ- 247 (1311)
T ss_pred eeecCCceEEEEE-eccCCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCccee-
Confidence 2222 44566664 667888887665 45 44543210 000 011222 45556655
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 037288 426 QLGVDQSERFVMSGGEDCKLRIWSIRS 452 (513)
Q Consensus 426 ~~~~s~~g~~l~sg~~Dg~v~vwd~~~ 452 (513)
+.++..-+.+.+=++.|+|.+||+..
T Consensus 248 -i~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 248 -ITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred -eEeccccceeeeeccCceEEEEEccC
Confidence 77777788999999999999999976
No 457
>PF09305 TACI-CRD2: TACI, cysteine-rich domain; InterPro: IPR015384 Cytokines can be grouped into a family on the basis of sequence, functional and structural similarities [, , ]. Tumor necrosis factor (TNF) (also known as TNF-alpha or cachectin) is a monocyte-derived cytotoxin that has been implicated in tumour regression, septic shock and cachexia [, ]. The protein is synthesised as a prohormone with an unusually long and atypical signal sequence, which is absent from the mature secreted cytokine []. A short hydrophobic stretch of amino acids serves to anchor the prohormone in lipid bilayers []. Both the mature protein and a partially-processed form of the hormone are secreted after cleavage of the propeptide []. There are a number of different families of TNF, but all these cytokines seem to form homotrimeric (or heterotrimeric in the case of LT-alpha/beta) complexes that are recognised by their specific receptors. This entry represents a cysteine-rich domain found in the TACI family of proteins. Members of this family are predominantly found in tumour necrosis factor receptor superfamily, member 13b (TACI), and are required for binding to the ligands APRIL and BAFF []. ; PDB: 1XU1_T 1XUT_A.
Probab=64.13 E-value=2.2 Score=26.44 Aligned_cols=15 Identities=27% Similarity=0.410 Sum_probs=10.4
Q ss_pred CCCccccccccCccc
Q 037288 4 ELPGFYYDAEKNRYF 18 (513)
Q Consensus 4 ~~pg~y~d~~~~~yf 18 (513)
+=+|+|||+--+--.
T Consensus 5 keqg~YyD~LL~~Ci 19 (41)
T PF09305_consen 5 KEQGQYYDPLLRDCI 19 (41)
T ss_dssp GGGTEEEETTTTEEE
T ss_pred hhhhHHHHHHHHHHc
Confidence 347999998766544
No 458
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=64.11 E-value=1.4e+02 Score=28.70 Aligned_cols=218 Identities=10% Similarity=0.032 Sum_probs=93.6
Q ss_pred cCcEEEEEEcCCCCEEEEEeCCeEEEEECCCCcE--EEEeeeC----CCeEEEEEecCCcEEEEEeCCCeEEEEECCCCc
Q 037288 256 KCTVWTADFCTNPSQAVIGTNLGAAMVDMETGMA--SWVCRSK----SDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQ 329 (513)
Q Consensus 256 ~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~--~~~~~~~----~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~ 329 (513)
...+.+|+|..+..-+++|+.+.| +-..+.|+. ....... -...+|.|.. ...+++| ..+.|. ...+.++
T Consensus 16 ~~~l~dV~F~d~~~G~~VG~~g~i-l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~-~~g~ivG-~~g~ll-~T~DgG~ 91 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVGAYGTI-LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDG-NEGWIVG-EPGLLL-HTTDGGK 91 (302)
T ss_dssp SS-EEEEEESSSS-EEEEETTTEE-EEESSTTSS-EE-----S-----EEEEEEEET-TEEEEEE-ETTEEE-EESSTTS
T ss_pred CCceEEEEEecCCEEEEEecCCEE-EEECCCCccccccccCCCccceeeEEEEEecC-CceEEEc-CCceEE-EecCCCC
Confidence 358899999976777777877654 222333331 1111111 2257788864 3445554 455433 3333333
Q ss_pred cccccc---cccccCcCeEEEeeCCeEEEeE----eeccc-CcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEE
Q 037288 330 RGCSSR---AGRRHRIPYSRLQRNDRVTNEQ----WFELK-ANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKL 401 (513)
Q Consensus 330 ~~~~~~---~~~~h~~~v~~v~~~~~~~s~~----w~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~l 401 (513)
.-..+. .+++....|..+.-....+.+. |.... +.-+..........+..+ ..+++|.+++++.......-
T Consensus 92 tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~iy~T~DgG~tW~~~~~~~~gs~~~~-~r~~dG~~vavs~~G~~~~s 170 (302)
T PF14870_consen 92 TWERVPLSSKLPGSPFGITALGDGSAELAGDRGAIYRTTDGGKTWQAVVSETSGSINDI-TRSSDGRYVAVSSRGNFYSS 170 (302)
T ss_dssp S-EE----TT-SS-EEEEEEEETTEEEEEETT--EEEESSTTSSEEEEE-S----EEEE-EE-TTS-EEEEETTSSEEEE
T ss_pred CcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCcEEEeCCCCCCeeEcccCCcceeEeE-EECCCCcEEEEECcccEEEE
Confidence 211011 1222221222211111111111 22111 111111111112344443 45689999988877666678
Q ss_pred EecCCCCccceEEe-cCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEe-CCCCeEEEE----ecCCCCCeEEEEEcCCC
Q 037288 402 YDHRLTTRGAVQSY-EGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWS-IRSGELVFE----DKFSNSVPSAVCWRTQR 475 (513)
Q Consensus 402 wd~~~~~~~~~~~~-~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd-~~~~~~~~~----~~~~~~~v~~v~~~p~~ 475 (513)
||-- ... -... ..-...+.. +.|+|++.+.+.+ ..|.|++=+ ....+.... +....--+..++|.++.
T Consensus 171 ~~~G--~~~-w~~~~r~~~~riq~--~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~ 244 (302)
T PF14870_consen 171 WDPG--QTT-WQPHNRNSSRRIQS--MGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPN 244 (302)
T ss_dssp E-TT---SS--EEEE--SSS-EEE--EEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS
T ss_pred ecCC--Ccc-ceEEccCccceehh--ceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCC
Confidence 8853 221 2222 223344544 8899998876654 788888877 222222222 11223337899999886
Q ss_pred ceEEeeCCC
Q 037288 476 SMGPQIEGK 484 (513)
Q Consensus 476 ~~~~t~~~~ 484 (513)
.++|..+.+
T Consensus 245 ~~wa~gg~G 253 (302)
T PF14870_consen 245 EIWAVGGSG 253 (302)
T ss_dssp -EEEEESTT
T ss_pred CEEEEeCCc
Confidence 665555554
No 459
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=63.91 E-value=1.9e+02 Score=30.28 Aligned_cols=189 Identities=7% Similarity=-0.059 Sum_probs=98.1
Q ss_pred CcEEEEEEcCCCCEEE-EEe---CCeEEEEECCCCcEEEEeeeCCCeEEEEEecCC----cEEEEEeCCCeEEEEECCCC
Q 037288 257 CTVWTADFCTNPSQAV-IGT---NLGAAMVDMETGMASWVCRSKSDILAQQVIHSG----NVVLCGFRNGAIVTVDVRKR 328 (513)
Q Consensus 257 ~~V~~~~~s~~g~~l~-s~s---~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~----~~l~sg~~dg~i~iwd~~~~ 328 (513)
.+|..++|. ||+.++ +.- ++.++.=| ... ++.=..|..+.|.|-+ .-+++--....|.||.+--.
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~v---iGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s 92 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKV---IGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPS 92 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCC---ccE---eeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccC
Confidence 478889995 666554 321 12222211 112 2223458999999853 23444456789999988532
Q ss_pred ccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCC--C--ceEEEEEcCCCCEEEEEecCCeEEEEec
Q 037288 329 QRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPS--S--ISCLQSLQLYDQYFLASSMDGTVKLYDH 404 (513)
Q Consensus 329 ~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~--~--v~~~~~~~~~~~~l~s~s~dg~i~lwd~ 404 (513)
.... -+-+ ...+..+.. + ... ..|+|....|++-.....-.++++
T Consensus 93 ~~e~-~K~l-----------------------------~sQtcEi~e~~pvLpQG-CVWHPk~~iL~VLT~~dvSV~~sV 141 (671)
T PF15390_consen 93 TTER-NKLL-----------------------------MSQTCEIREPFPVLPQG-CVWHPKKAILTVLTARDVSVLPSV 141 (671)
T ss_pred cccc-ccce-----------------------------eeeeeeccCCcccCCCc-ccccCCCceEEEEecCceeEeeee
Confidence 2111 0000 011111100 0 111 246777777777666555567777
Q ss_pred CCCCccceEEecCCCCceeEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCeEEE----EecCCCCCeEEEEEcCCCceEE
Q 037288 405 RLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSG-GEDCKLRIWSIRSGELVF----EDKFSNSVPSAVCWRTQRSMGP 479 (513)
Q Consensus 405 ~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg-~~Dg~v~vwd~~~~~~~~----~~~~~~~~v~~v~~~p~~~~~~ 479 (513)
+........-++ -.+.|.+ .+|.+||+.|+.+ |..=.-++||-....+.. ..-.-++.|.++.-.-+..+.+
T Consensus 142 ~~d~srVkaDi~-~~G~IhC--ACWT~DG~RLVVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~AT~dsqVAv 218 (671)
T PF15390_consen 142 HCDSSRVKADIK-TSGLIHC--ACWTKDGQRLVVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEATVDSQVAV 218 (671)
T ss_pred eeCCceEEEecc-CCceEEE--EEecCcCCEEEEEeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEEEeccceEEE
Confidence 632222223333 3445555 8999999877654 444456899854332111 0112244577766666666777
Q ss_pred eeCCCee
Q 037288 480 QIEGKIH 486 (513)
Q Consensus 480 t~~~~~~ 486 (513)
+.+.-++
T Consensus 219 aTELPLd 225 (671)
T PF15390_consen 219 ATELPLD 225 (671)
T ss_pred EecCchH
Confidence 7666555
No 460
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=63.60 E-value=1.2 Score=44.38 Aligned_cols=141 Identities=15% Similarity=0.137 Sum_probs=82.9
Q ss_pred EEEEEcCCCCEEEE-EeCCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCc-EEEEEeCCCeEEEEECCCCccccccccc
Q 037288 260 WTADFCTNPSQAVI-GTNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGN-VVLCGFRNGAIVTVDVRKRQRGCSSRAG 337 (513)
Q Consensus 260 ~~~~~s~~g~~l~s-~s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~-~l~sg~~dg~i~iwd~~~~~~~~~~~~~ 337 (513)
....|.+++.-++. +.+..+..||-. ++.......+.....++|..++. .++.+-..+.+.+||+.+..... +..-
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqq-LE~g 115 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ-LESG 115 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhh-cceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHH-Hhcc
Confidence 34556665554554 455556777765 33333334556677888888885 44555678999999998664322 1110
Q ss_pred cccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccceEEecC
Q 037288 338 RRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAVQSYEG 417 (513)
Q Consensus 338 ~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~ 417 (513)
-. ...++..|++....++.+...|.+.|++.+ ....+...-.
T Consensus 116 g~------------------------------------~s~sll~wsKg~~el~ig~~~gn~viynhg--tsR~iiv~Gk 157 (615)
T KOG2247|consen 116 GT------------------------------------SSKSLLAWSKGTPELVIGNNAGNIVIYNHG--TSRRIIVMGK 157 (615)
T ss_pred Cc------------------------------------chHHHHhhccCCccccccccccceEEEecc--chhhhhhhcc
Confidence 00 111223566777778888889999999986 2222222223
Q ss_pred CCCceeEEEEEEcCCCCEEEEEeCCC
Q 037288 418 HVNSHTRIQLGVDQSERFVMSGGEDC 443 (513)
Q Consensus 418 h~~~v~~~~~~~s~~g~~l~sg~~Dg 443 (513)
|...++. .++.+++. .+.++.|.
T Consensus 158 h~RRgtq--~av~lEd~-vil~dcd~ 180 (615)
T KOG2247|consen 158 HQRRGTQ--IAVTLEDY-VILCDCDN 180 (615)
T ss_pred cccceeE--EEecccce-eeecCcHH
Confidence 7776666 77777764 34444443
No 461
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.50 E-value=1.7e+02 Score=29.56 Aligned_cols=94 Identities=9% Similarity=0.028 Sum_probs=53.8
Q ss_pred CceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccc--eEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 037288 376 SISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGA--VQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSG 453 (513)
Q Consensus 376 ~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~--~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~ 453 (513)
.|.++ .|++|.+.+|+--.|.+|.+++....+... .++.+.....+ +.+.|+.+ .-++--...| +-+|-+...
T Consensus 68 ~I~SI-kFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~I--lGF~W~~s-~e~A~i~~~G-~e~y~v~pe 142 (657)
T KOG2377|consen 68 EIKSI-KFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANI--LGFCWTSS-TEIAFITDQG-IEFYQVLPE 142 (657)
T ss_pred ceeEE-EeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCccee--EEEEEecC-eeEEEEecCC-eEEEEEchh
Confidence 34443 678899999999999999999974111111 12222222223 44777655 3344444333 666655433
Q ss_pred e-EEEEecCCCCCeEEEEEcCC
Q 037288 454 E-LVFEDKFSNSVPSAVCWRTQ 474 (513)
Q Consensus 454 ~-~~~~~~~~~~~v~~v~~~p~ 474 (513)
+ .++..+.+...|+=..|.++
T Consensus 143 krslRlVks~~~nvnWy~yc~e 164 (657)
T KOG2377|consen 143 KRSLRLVKSHNLNVNWYMYCPE 164 (657)
T ss_pred hhhhhhhhhcccCccEEEEccc
Confidence 2 33334555666777788887
No 462
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=63.16 E-value=25 Score=21.78 Aligned_cols=21 Identities=24% Similarity=0.474 Sum_probs=16.2
Q ss_pred CCcEEEEEeCCCeEEEEECCC
Q 037288 307 SGNVVLCGFRNGAIVTVDVRK 327 (513)
Q Consensus 307 ~~~~l~sg~~dg~i~iwd~~~ 327 (513)
.+..|+.++.||.+..+|.++
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 466888999999999999763
No 463
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=61.78 E-value=83 Score=27.31 Aligned_cols=28 Identities=7% Similarity=0.088 Sum_probs=22.0
Q ss_pred EEEEEcCCC------CEEEEEeCCCcEEEEeCCC
Q 037288 425 IQLGVDQSE------RFVMSGGEDCKLRIWSIRS 452 (513)
Q Consensus 425 ~~~~~s~~g------~~l~sg~~Dg~v~vwd~~~ 452 (513)
..++|||.| -+|++-..++.|.||.-..
T Consensus 89 v~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 89 VSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred EEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 458999954 3678888899999998664
No 464
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=61.31 E-value=1.9e+02 Score=29.28 Aligned_cols=52 Identities=4% Similarity=-0.198 Sum_probs=33.7
Q ss_pred EeCCeEEEEECCCCcEEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEEC
Q 037288 274 GTNLGAAMVDMETGMASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDV 325 (513)
Q Consensus 274 ~s~~~i~vwd~~~~~~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~ 325 (513)
+-|+.+.+++-+.-.-...+..---.-.+.+.+.-..|++++.+..+..|..
T Consensus 152 S~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 152 SMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred ecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCceeEEEecH
Confidence 3566788888765443333332112345667777788888888888888864
No 465
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=60.82 E-value=1.7e+02 Score=28.56 Aligned_cols=12 Identities=33% Similarity=0.498 Sum_probs=8.9
Q ss_pred cCCcEEEEEeCC
Q 037288 306 HSGNVVLCGFRN 317 (513)
Q Consensus 306 ~~~~~l~sg~~d 317 (513)
-++++.+.|+.+
T Consensus 117 ~~g~IYviGG~~ 128 (346)
T TIGR03547 117 HNGQAYFTGGVN 128 (346)
T ss_pred eCCEEEEEcCcC
Confidence 467888888765
No 466
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=60.32 E-value=41 Score=37.69 Aligned_cols=110 Identities=9% Similarity=-0.024 Sum_probs=67.4
Q ss_pred cEEEEEEcCCCCEEEEE--eCCe-EEEEECCCCcEEE-----Eee-------eCCCeEEEEEecCC-cEEEEEeCCCeEE
Q 037288 258 TVWTADFCTNPSQAVIG--TNLG-AAMVDMETGMASW-----VCR-------SKSDILAQQVIHSG-NVVLCGFRNGAIV 321 (513)
Q Consensus 258 ~V~~~~~s~~g~~l~s~--s~~~-i~vwd~~~~~~~~-----~~~-------~~~~V~~l~~~~~~-~~l~sg~~dg~i~ 321 (513)
++..+...+|+...++. ++|. |..+|+++-.... .+. ...-+.++.|+|.- ...++...|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 56666666777655433 4443 7889987542111 111 12235788898854 3466667888888
Q ss_pred EEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEE
Q 037288 322 TVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKL 401 (513)
Q Consensus 322 iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~l 401 (513)
+.-+....... .. +......++ ++|+|.|..+++|-..|++.-
T Consensus 182 V~~~~~~~~~v--~s----------------------------------~p~t~~~Ta-v~WSprGKQl~iG~nnGt~vQ 224 (1405)
T KOG3630|consen 182 VKSTKQLAQNV--TS----------------------------------FPVTNSQTA-VLWSPRGKQLFIGRNNGTEVQ 224 (1405)
T ss_pred hhhhhhhhhhh--cc----------------------------------cCcccceee-EEeccccceeeEecCCCeEEE
Confidence 87765543321 00 111122233 478889999999999999998
Q ss_pred Eec
Q 037288 402 YDH 404 (513)
Q Consensus 402 wd~ 404 (513)
|-.
T Consensus 225 y~P 227 (1405)
T KOG3630|consen 225 YEP 227 (1405)
T ss_pred eec
Confidence 875
No 467
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=60.15 E-value=1.5e+02 Score=27.64 Aligned_cols=95 Identities=12% Similarity=-0.004 Sum_probs=52.9
Q ss_pred EEcCCCCEEEEEecCCeEEEEe-cCCCCcc-ceEEecCC--CCceeEEEEEEcCCCCEEEEEe---CCCcEEEEeCC---
Q 037288 382 SLQLYDQYFLASSMDGTVKLYD-HRLTTRG-AVQSYEGH--VNSHTRIQLGVDQSERFVMSGG---EDCKLRIWSIR--- 451 (513)
Q Consensus 382 ~~~~~~~~l~s~s~dg~i~lwd-~~~~~~~-~~~~~~~h--~~~v~~~~~~~s~~g~~l~sg~---~Dg~v~vwd~~--- 451 (513)
.|++++...+....+...+++. .. ... ........ ...|.. +.+||||..++.-. .++.|.+=-+.
T Consensus 72 S~d~~g~~W~v~~~~~~~~~~~~~~--~g~~~~~~v~~~~~~~~I~~--l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~ 147 (253)
T PF10647_consen 72 SWDPDGWVWTVDDGSGGVRVVRDSA--SGTGEPVEVDWPGLRGRITA--LRVSPDGTRVAVVVEDGGGGRVYVAGVVRDG 147 (253)
T ss_pred cccCCCCEEEEEcCCCceEEEEecC--CCcceeEEecccccCCceEE--EEECCCCcEEEEEEecCCCCeEEEEEEEeCC
Confidence 4666777766666666666663 21 111 11112111 114555 88999998876554 35777777553
Q ss_pred CC--e----EEEEecCCCCCeEEEEEcCCCceEEe
Q 037288 452 SG--E----LVFEDKFSNSVPSAVCWRTQRSMGPQ 480 (513)
Q Consensus 452 ~~--~----~~~~~~~~~~~v~~v~~~p~~~~~~t 480 (513)
.+ . .+.........++.+.|.++..+++.
T Consensus 148 ~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~ 182 (253)
T PF10647_consen 148 DGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVL 182 (253)
T ss_pred CCCcceeccceEecccccCcceeeeecCCCEEEEE
Confidence 23 1 11112223467899999999654443
No 468
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=59.39 E-value=37 Score=20.74 Aligned_cols=28 Identities=18% Similarity=0.155 Sum_probs=14.9
Q ss_pred CCCeEEEEEecCCc-EEEEEeCC--CeEEEE
Q 037288 296 KSDILAQQVIHSGN-VVLCGFRN--GAIVTV 323 (513)
Q Consensus 296 ~~~V~~l~~~~~~~-~l~sg~~d--g~i~iw 323 (513)
...-....|+|||+ +++++..+ |.-.||
T Consensus 8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 34456677777774 34444445 554444
No 469
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=58.37 E-value=1.5e+02 Score=28.73 Aligned_cols=64 Identities=14% Similarity=0.015 Sum_probs=34.8
Q ss_pred CCCEEEEEeC------CeEEEEECCCCcEEEEe--eeCCCeEEEEEecCCcEEEEEeCCC----eEEEEECCCCcc
Q 037288 267 NPSQAVIGTN------LGAAMVDMETGMASWVC--RSKSDILAQQVIHSGNVVLCGFRNG----AIVTVDVRKRQR 330 (513)
Q Consensus 267 ~g~~l~s~s~------~~i~vwd~~~~~~~~~~--~~~~~V~~l~~~~~~~~l~sg~~dg----~i~iwd~~~~~~ 330 (513)
++.+.+.|+. ..+..||+.+.+=...- .............++++.+.|+.++ .+.+||+.+.+.
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 5666666542 23777888776522211 1111222222334677888887764 345788877654
No 470
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=57.13 E-value=2.2e+02 Score=28.66 Aligned_cols=65 Identities=12% Similarity=0.018 Sum_probs=42.1
Q ss_pred CcEEEEEEcCCCCEEEEEeCCeE-EEEECCCCc-EEEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEE
Q 037288 257 CTVWTADFCTNPSQAVIGTNLGA-AMVDMETGM-ASWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVT 322 (513)
Q Consensus 257 ~~V~~~~~s~~g~~l~s~s~~~i-~vwd~~~~~-~~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~i 322 (513)
+....+..+++|.+++.+..+.+ +-||-.... ..........+.++.|.+++.+++++ .+|.+..
T Consensus 239 Gsf~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~ 305 (398)
T PLN00033 239 GTFSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV 305 (398)
T ss_pred cceeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE
Confidence 44666778889999999887764 344432211 11222344568999999999888776 5666544
No 471
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=56.76 E-value=29 Score=21.28 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=23.1
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEecC
Q 037288 435 FVMSGGEDCKLRIWSIRSGELVFEDKF 461 (513)
Q Consensus 435 ~l~sg~~Dg~v~vwd~~~~~~~~~~~~ 461 (513)
.++.++.||.|+-.|.++|+.+-.++.
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 456679999999999999999988764
No 472
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=56.72 E-value=2.3 Score=42.49 Aligned_cols=141 Identities=8% Similarity=-0.024 Sum_probs=87.3
Q ss_pred EEEEEecCCcEEEEEeCCCeEEEEECCCCccccccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceE
Q 037288 300 LAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISC 379 (513)
Q Consensus 300 ~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~ 379 (513)
....|-+.+.-++.++.+..+..||-....... +. ..+....+
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~agq~~le----~n-~tg~aldm-------------------------------- 80 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKAGQVILE----LN-PTGKALDM-------------------------------- 80 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhhcceecc----cC-CchhHhhh--------------------------------
Confidence 344567777668888888889888876543211 00 00001111
Q ss_pred EEEEcCCCC-EEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEE
Q 037288 380 LQSLQLYDQ-YFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWSIRSGELVFE 458 (513)
Q Consensus 380 ~~~~~~~~~-~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~ 458 (513)
.+..++. .++.+-..+.+.+||+.......+..--.|.... +.|++....++.|-..|.+.|++..+...+-.
T Consensus 81 --~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~~s~sl----l~wsKg~~el~ig~~~gn~viynhgtsR~iiv 154 (615)
T KOG2247|consen 81 --AWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSL----LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIV 154 (615)
T ss_pred --hhccccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHHH----HhhccCCccccccccccceEEEeccchhhhhh
Confidence 1222333 3345566789999999621111221111233332 67888888999999999999999988877766
Q ss_pred ecCCCCCeEEEEEcCCCceEEeeCC
Q 037288 459 DKFSNSVPSAVCWRTQRSMGPQIEG 483 (513)
Q Consensus 459 ~~~~~~~v~~v~~~p~~~~~~t~~~ 483 (513)
...|...+++++|.+.+..+..+..
T Consensus 155 ~Gkh~RRgtq~av~lEd~vil~dcd 179 (615)
T KOG2247|consen 155 MGKHQRRGTQIAVTLEDYVILCDCD 179 (615)
T ss_pred hcccccceeEEEecccceeeecCcH
Confidence 6557778999999998665554443
No 473
>PLN02193 nitrile-specifier protein
Probab=55.21 E-value=2.6e+02 Score=28.88 Aligned_cols=70 Identities=11% Similarity=0.125 Sum_probs=36.7
Q ss_pred CCCEEEEEecC----CeEEEEecCCCCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCC--------------CcEEE
Q 037288 386 YDQYFLASSMD----GTVKLYDHRLTTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGED--------------CKLRI 447 (513)
Q Consensus 386 ~~~~l~s~s~d----g~i~lwd~~~~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~D--------------g~v~v 447 (513)
+++.++.++.+ ..+.+||+.......+.....-..+.....+ ..-++++++.|+.+ ..+.+
T Consensus 328 ~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~ 406 (470)
T PLN02193 328 QGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFAS-AAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFA 406 (470)
T ss_pred CCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEE-EEECCEEEEECCccCCccccccCccceeccEEE
Confidence 56677777655 4588999863222222221100111111111 22356777888853 25888
Q ss_pred EeCCCCeEE
Q 037288 448 WSIRSGELV 456 (513)
Q Consensus 448 wd~~~~~~~ 456 (513)
+|+.+.+-.
T Consensus 407 ~D~~t~~W~ 415 (470)
T PLN02193 407 LDTETLQWE 415 (470)
T ss_pred EEcCcCEEE
Confidence 998877643
No 474
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=55.04 E-value=2e+02 Score=27.60 Aligned_cols=69 Identities=16% Similarity=0.120 Sum_probs=50.4
Q ss_pred cEEEEEEcCCCCEEEEEeC-CeEEEEECCCCcEEEEeeeC-CC-----eEEEEEecCCcEEEEEeCCCeEEEEECC
Q 037288 258 TVWTADFCTNPSQAVIGTN-LGAAMVDMETGMASWVCRSK-SD-----ILAQQVIHSGNVVLCGFRNGAIVTVDVR 326 (513)
Q Consensus 258 ~V~~~~~s~~g~~l~s~s~-~~i~vwd~~~~~~~~~~~~~-~~-----V~~l~~~~~~~~l~sg~~dg~i~iwd~~ 326 (513)
-++++....+|.+|+++-. ..|.+.|-.+|+.++.+..+ .. -...++-.|-+++-.+..++.|.++|-.
T Consensus 145 HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~ 220 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNA 220 (299)
T ss_pred EeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCC
Confidence 5788888899999988844 55899999999999988744 21 1123344455666666788999999874
No 475
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=55.03 E-value=1e+02 Score=28.78 Aligned_cols=75 Identities=9% Similarity=0.080 Sum_probs=43.3
Q ss_pred ecCCCceEEEEEcCC------CCEEEEEecCCeEEEEecCCCCccceEEecCCCCceeEEE-EEEcCCCCEEEEEeCCCc
Q 037288 372 FMPSSISCLQSLQLY------DQYFLASSMDGTVKLYDHRLTTRGAVQSYEGHVNSHTRIQ-LGVDQSERFVMSGGEDCK 444 (513)
Q Consensus 372 ~~~~~v~~~~~~~~~------~~~l~s~s~dg~i~lwd~~~~~~~~~~~~~~h~~~v~~~~-~~~s~~g~~l~sg~~Dg~ 444 (513)
.....|+|+..+..+ -..|+.|+.+|.|.|.|.. ....+..+.-..-++.... =.|+.-+-.|+.++.||.
T Consensus 174 ~~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~--af~il~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~ 251 (257)
T PF14779_consen 174 KRQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQ--AFTILKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGK 251 (257)
T ss_pred ccCceeEEeeeecccccCCCCcceEEEEecCCeEEEECch--hheeEEEEecCCCceEEEEEeeeeccceEEEEEeCCCE
Confidence 344566666554322 2479999999999999975 3334444443333332211 123312334777888998
Q ss_pred EEEE
Q 037288 445 LRIW 448 (513)
Q Consensus 445 v~vw 448 (513)
|++-
T Consensus 252 iy~i 255 (257)
T PF14779_consen 252 IYTI 255 (257)
T ss_pred EEEE
Confidence 8763
No 476
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=54.78 E-value=2e+02 Score=27.56 Aligned_cols=76 Identities=12% Similarity=0.120 Sum_probs=50.4
Q ss_pred EecCCeEEEEecCCCCccceEEec--CCCCceeEEEEEEcC------CCCEEEEEeCCCcEEEEeCCCCeEEEEecCCC-
Q 037288 393 SSMDGTVKLYDHRLTTRGAVQSYE--GHVNSHTRIQLGVDQ------SERFVMSGGEDCKLRIWSIRSGELVFEDKFSN- 463 (513)
Q Consensus 393 ~s~dg~i~lwd~~~~~~~~~~~~~--~h~~~v~~~~~~~s~------~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~- 463 (513)
|..-|.|-+||+ ....++.+. +.-+.-.. ++..| .|.+|+---.||+|..||..+++.+-.+....
T Consensus 218 G~G~G~VdvFd~---~G~l~~r~as~g~LNaPWG--~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G 292 (336)
T TIGR03118 218 GAGLGYVNVFTL---NGQLLRRVASSGRLNAPWG--LAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDN 292 (336)
T ss_pred CCCcceEEEEcC---CCcEEEEeccCCcccCCce--eeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCC
Confidence 344578899997 455777673 22233333 44433 46677766679999999999999887765443
Q ss_pred -----CCeEEEEEcC
Q 037288 464 -----SVPSAVCWRT 473 (513)
Q Consensus 464 -----~~v~~v~~~p 473 (513)
...+.++|..
T Consensus 293 ~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 293 HPVKVDGLWSLTFGN 307 (336)
T ss_pred CeEEecCeEEeeeCC
Confidence 2367788876
No 477
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=54.78 E-value=3.4e+02 Score=30.09 Aligned_cols=65 Identities=9% Similarity=0.132 Sum_probs=44.2
Q ss_pred CCCEEEEEeCCeEEEEECCCCcEEEEeeeCCCe---------EEEEEec----------------CCcEEEEEeCCCeEE
Q 037288 267 NPSQAVIGTNLGAAMVDMETGMASWVCRSKSDI---------LAQQVIH----------------SGNVVLCGFRNGAIV 321 (513)
Q Consensus 267 ~g~~l~s~s~~~i~vwd~~~~~~~~~~~~~~~V---------~~l~~~~----------------~~~~l~sg~~dg~i~ 321 (513)
++.++++..++.|.-.|..+|+.++.+..+..+ ..+.+.. .+..|+.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 455555555677888899999988887643322 1222221 234788888999999
Q ss_pred EEECCCCccc
Q 037288 322 TVDVRKRQRG 331 (513)
Q Consensus 322 iwd~~~~~~~ 331 (513)
-.|.++++..
T Consensus 274 ALDA~TGk~~ 283 (764)
T TIGR03074 274 ALDADTGKLC 283 (764)
T ss_pred EEECCCCCEE
Confidence 9999988754
No 478
>PHA03035 hypothetical protein; Provisional
Probab=54.41 E-value=4.7 Score=31.78 Aligned_cols=11 Identities=45% Similarity=0.951 Sum_probs=10.1
Q ss_pred cccccccCccc
Q 037288 8 FYYDAEKNRYF 18 (513)
Q Consensus 8 ~y~d~~~~~yf 18 (513)
-|||..|||||
T Consensus 54 ~y~dndkkkyf 64 (158)
T PHA03035 54 AYEDNDKKKYF 64 (158)
T ss_pred eeecCCceeee
Confidence 39999999999
No 479
>PLN02153 epithiospecifier protein
Probab=53.81 E-value=2.2e+02 Score=27.73 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=15.6
Q ss_pred CCcEEEEEeCC-----CeEEEEECCCCcc
Q 037288 307 SGNVVLCGFRN-----GAIVTVDVRKRQR 330 (513)
Q Consensus 307 ~~~~l~sg~~d-----g~i~iwd~~~~~~ 330 (513)
++.+++.|+.+ ..+.+||+.+.+.
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W 113 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEW 113 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEE
Confidence 56777777754 3467788776553
No 480
>smart00131 KU BPTI/Kunitz family of serine protease inhibitors. Serine protease inhibitors. One member of the family is encoded by an alternatively-spliced form of Alzheimer's amyloid beta-protein.
Probab=52.52 E-value=5.4 Score=26.79 Aligned_cols=17 Identities=35% Similarity=0.851 Sum_probs=14.3
Q ss_pred CCCccccccccCccccc
Q 037288 4 ELPGFYYDAEKNRYFPI 20 (513)
Q Consensus 4 ~~pg~y~d~~~~~yf~~ 20 (513)
..++||||+++++=.+.
T Consensus 15 ~~~~w~yd~~~~~C~~f 31 (53)
T smart00131 15 SIPRYYYDPETGTCEPF 31 (53)
T ss_pred CeeEEEEeCCCCcccee
Confidence 56899999999987665
No 481
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=50.44 E-value=2.3e+02 Score=26.99 Aligned_cols=153 Identities=12% Similarity=0.076 Sum_probs=82.9
Q ss_pred CcEEEEEEcCCCCEEEEE-eCCeEEEEECCCCcE---EEEeeeCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCcccc
Q 037288 257 CTVWTADFCTNPSQAVIG-TNLGAAMVDMETGMA---SWVCRSKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGC 332 (513)
Q Consensus 257 ~~V~~~~~s~~g~~l~s~-s~~~i~vwd~~~~~~---~~~~~~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~ 332 (513)
+.+.++.++. ++...+ .+.+++|.|+.+... +..+...+--.++. -.|++..++..|.-+.+.|+.++....
T Consensus 87 ~l~~Dv~vse--~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~--vsGn~aYVadlddgfLivdvsdpssP~ 162 (370)
T COG5276 87 DLFADVRVSE--EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVY--VSGNYAYVADLDDGFLIVDVSDPSSPQ 162 (370)
T ss_pred hhhheeEecc--cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEE--ecCCEEEEeeccCcEEEEECCCCCCce
Confidence 4555666643 344444 345699999987753 23333333344444 458999999877778888998775422
Q ss_pred ccccccccCcCeEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCccce
Q 037288 333 SSRAGRRHRIPYSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRGAV 412 (513)
Q Consensus 333 ~~~~~~~h~~~v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~~~ 412 (513)
+.|.+... +.-..-+.. .|++-..+..|+-+.+-|+..... +
T Consensus 163 ---------------------lagrya~~-------------~~d~~~v~I--SGn~AYvA~~d~GL~ivDVSnp~s-P- 204 (370)
T COG5276 163 ---------------------LAGRYALP-------------GGDTHDVAI--SGNYAYVAWRDGGLTIVDVSNPHS-P- 204 (370)
T ss_pred ---------------------eeeeeccC-------------CCCceeEEE--ecCeEEEEEeCCCeEEEEccCCCC-C-
Confidence 11111111 110011233 478888888999999999962221 2
Q ss_pred EEecCCCCce-eEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCe
Q 037288 413 QSYEGHVNSH-TRIQLGVDQSERFVMSGGEDCKLRIWSIRSGE 454 (513)
Q Consensus 413 ~~~~~h~~~v-~~~~~~~s~~g~~l~sg~~Dg~v~vwd~~~~~ 454 (513)
+|.+|.+.- ....+..+++--+++.. |--+.+-|..+.+
T Consensus 205 -vli~~~n~g~g~~sv~vsdnr~y~vvy--~egvlivd~s~~s 244 (370)
T COG5276 205 -VLIGSYNTGPGTYSVSVSDNRAYLVVY--DEGVLIVDVSGPS 244 (370)
T ss_pred -eEEEEEecCCceEEEEecCCeeEEEEc--ccceEEEecCCCC
Confidence 233332221 22224555444444433 3446677766655
No 482
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.87 E-value=2.9e+02 Score=32.01 Aligned_cols=76 Identities=17% Similarity=0.116 Sum_probs=55.1
Q ss_pred cccCcEEEEEEcCCCCEEEEEeCCeEE--EEECCCC---c-EE-----------------EEe-eeCCCeEEEEEecCCc
Q 037288 254 SFKCTVWTADFCTNPSQAVIGTNLGAA--MVDMETG---M-AS-----------------WVC-RSKSDILAQQVIHSGN 309 (513)
Q Consensus 254 ~h~~~V~~~~~s~~g~~l~s~s~~~i~--vwd~~~~---~-~~-----------------~~~-~~~~~V~~l~~~~~~~ 309 (513)
...-.|.|+....+|+.+.+|.||.+. +|....+ + +. ... .+.++|..+......+
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~ 255 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRN 255 (1311)
T ss_pred cCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccc
Confidence 334689999988899999999988652 3333332 1 11 111 2456799999988889
Q ss_pred EEEEEeCCCeEEEEECCCCc
Q 037288 310 VVLCGFRNGAIVTVDVRKRQ 329 (513)
Q Consensus 310 ~l~sg~~dg~i~iwd~~~~~ 329 (513)
++++-+..|+|.+||+....
T Consensus 256 IlY~lsek~~v~~Y~i~~~G 275 (1311)
T KOG1900|consen 256 ILYVLSEKGTVSAYDIGGNG 275 (1311)
T ss_pred eeeeeccCceEEEEEccCCC
Confidence 99999999999999997643
No 483
>PRK13684 Ycf48-like protein; Provisional
Probab=45.86 E-value=3e+02 Score=26.88 Aligned_cols=149 Identities=11% Similarity=-0.040 Sum_probs=0.0
Q ss_pred cCcEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEEEee--eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCCCccccc
Q 037288 256 KCTVWTADFCTNPSQAVIGTNLGAAMVDMETGMASWVCR--SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRGCS 333 (513)
Q Consensus 256 ~~~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~--~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~ 333 (513)
...+.++.+.+++.+++++..+.+..-.-..++.-.... ....++++.+.++++.+++| ..|.+.+=..+.+.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~---- 246 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLE---- 246 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCC----
Q ss_pred cccccccCcC-------eEEEeeCCeEEEeEeecccCcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCC
Q 037288 334 SRAGRRHRIP-------YSRLQRNDRVTNEQWFELKANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRL 406 (513)
Q Consensus 334 ~~~~~~h~~~-------v~~v~~~~~~~s~~w~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~ 406 (513)
.......+ +.+ +.+.+++..++++.....++--|
T Consensus 247 --sW~~~~~~~~~~~~~l~~----------------------------------v~~~~~~~~~~~G~~G~v~~S~d--- 287 (334)
T PRK13684 247 --SWSKPIIPEITNGYGYLD----------------------------------LAYRTPGEIWAGGGNGTLLVSKD--- 287 (334)
T ss_pred --ccccccCCccccccceee----------------------------------EEEcCCCCEEEEcCCCeEEEeCC---
Q ss_pred CCccceEEecCCCCceeEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 037288 407 TTRGAVQSYEGHVNSHTRIQLGVDQSERFVMSGGEDCKLRIWS 449 (513)
Q Consensus 407 ~~~~~~~~~~~h~~~v~~~~~~~s~~g~~l~sg~~Dg~v~vwd 449 (513)
....-.........-..+--.+-.++...+..+..|.|.-|+
T Consensus 288 -~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~il~~~ 329 (334)
T PRK13684 288 -GGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVLLRYV 329 (334)
T ss_pred -CCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceEEEec
No 484
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=45.60 E-value=3.1e+02 Score=27.05 Aligned_cols=65 Identities=12% Similarity=0.180 Sum_probs=43.2
Q ss_pred CCCCEEEEEeCCeEEEEECCCCcEEEEeeeCC---CeEEEEEecCCcEEEEEeCCCeEEEEECCCCccc
Q 037288 266 TNPSQAVIGTNLGAAMVDMETGMASWVCRSKS---DILAQQVIHSGNVVLCGFRNGAIVTVDVRKRQRG 331 (513)
Q Consensus 266 ~~g~~l~s~s~~~i~vwd~~~~~~~~~~~~~~---~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~~~~~ 331 (513)
-+++.++...++.+...|.+++..++...... .+.+-.+..+|+ |+.++.+|.++.+|.++++..
T Consensus 67 ~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~ 134 (370)
T COG1520 67 GDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLV 134 (370)
T ss_pred eCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEE
Confidence 36666666566678888888888776554332 233333334666 778888999999999777654
No 485
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=45.11 E-value=1.3e+02 Score=29.02 Aligned_cols=59 Identities=12% Similarity=0.139 Sum_probs=42.3
Q ss_pred CCCEEEEEeCCeEEEEECCCC--cEEEEeeeCCCeEEEEEecCCcEEEEE-eCCCeEEEEECC
Q 037288 267 NPSQAVIGTNLGAAMVDMETG--MASWVCRSKSDILAQQVIHSGNVVLCG-FRNGAIVTVDVR 326 (513)
Q Consensus 267 ~g~~l~s~s~~~i~vwd~~~~--~~~~~~~~~~~V~~l~~~~~~~~l~sg-~~dg~i~iwd~~ 326 (513)
++++++.|++.++.+.++... .... +-+...|+++...+.-++|++- +....++.+|+.
T Consensus 12 ~~~~lL~GTe~Gly~~~~~~~~~~~~k-l~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~ 73 (302)
T smart00036 12 DGKWLLVGTEEGLYVLNISDQPGTLEK-LIGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLS 73 (302)
T ss_pred CCcEEEEEeCCceEEEEcccCCCCeEE-ecCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHH
Confidence 346899999999999997652 3333 3356689999999877655544 344559999984
No 486
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=44.16 E-value=2.6e+02 Score=25.72 Aligned_cols=75 Identities=12% Similarity=0.042 Sum_probs=53.6
Q ss_pred ccCcEEEEEEcC-CCCEEEEEeCCeEEEEECCCCcEEEE----ee--eCCCeEEEEEecCCcEEEEEeCCCeEEEEECCC
Q 037288 255 FKCTVWTADFCT-NPSQAVIGTNLGAAMVDMETGMASWV----CR--SKSDILAQQVIHSGNVVLCGFRNGAIVTVDVRK 327 (513)
Q Consensus 255 h~~~V~~~~~s~-~g~~l~s~s~~~i~vwd~~~~~~~~~----~~--~~~~V~~l~~~~~~~~l~sg~~dg~i~iwd~~~ 327 (513)
....+..++|.| +|++.+.++.+.++..|..++..... +. -...-..++|+|--..|-.-+.+|+=.-.++.+
T Consensus 25 ~ge~l~GID~Rpa~G~LYgl~~~g~lYtIn~~tG~aT~vg~s~~~~al~g~~~gvDFNP~aDRlRvvs~~GqNlR~npdt 104 (236)
T PF14339_consen 25 AGESLVGIDFRPANGQLYGLGSTGRLYTINPATGAATPVGASPLTVALSGTAFGVDFNPAADRLRVVSNTGQNLRLNPDT 104 (236)
T ss_pred CCCeEEEEEeecCCCCEEEEeCCCcEEEEECCCCeEEEeecccccccccCceEEEecCcccCcEEEEccCCcEEEECCCC
Confidence 346889999999 78888888889999999999975444 11 223478899999665554444566655566666
Q ss_pred Cc
Q 037288 328 RQ 329 (513)
Q Consensus 328 ~~ 329 (513)
+.
T Consensus 105 Ga 106 (236)
T PF14339_consen 105 GA 106 (236)
T ss_pred CC
Confidence 54
No 487
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=41.35 E-value=4.2e+02 Score=27.38 Aligned_cols=53 Identities=11% Similarity=0.080 Sum_probs=29.0
Q ss_pred EEEcCCCCEEEEEeCCeEEEEECCCCcEEEEeeeCCC----eEEEEEecCCcEEEEEeC
Q 037288 262 ADFCTNPSQAVIGTNLGAAMVDMETGMASWVCRSKSD----ILAQQVIHSGNVVLCGFR 316 (513)
Q Consensus 262 ~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~~~~~~~~----V~~l~~~~~~~~l~sg~~ 316 (513)
+...++|.+++... ..+..+|+. |+.++....... =..+..-|+|++|+.+..
T Consensus 153 ~~~l~nG~ll~~~~-~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~ 209 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG-NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASE 209 (477)
T ss_dssp EEE-TTS-EEEEEB-TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEE
T ss_pred eeEcCCCCEEEecC-CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEee
Confidence 55667888886554 678888886 666655553332 256667789998888764
No 488
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=40.65 E-value=69 Score=18.08 Aligned_cols=23 Identities=17% Similarity=0.164 Sum_probs=12.5
Q ss_pred EEEEEecCCcEEEEEeCCCeEEE
Q 037288 300 LAQQVIHSGNVVLCGFRNGAIVT 322 (513)
Q Consensus 300 ~~l~~~~~~~~l~sg~~dg~i~i 322 (513)
..++++++|+++++=..+..|++
T Consensus 5 ~gvav~~~g~i~VaD~~n~rV~v 27 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSGNHRVQV 27 (28)
T ss_dssp EEEEEETTSEEEEEECCCTEEEE
T ss_pred cEEEEeCCCCEEEEECCCCEEEE
Confidence 44555556655555555555544
No 489
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=38.13 E-value=54 Score=34.56 Aligned_cols=33 Identities=9% Similarity=-0.022 Sum_probs=26.1
Q ss_pred eEEEEEec----CCcEEEEEeCCCeEEEEECCCCccc
Q 037288 299 ILAQQVIH----SGNVVLCGFRNGAIVTVDVRKRQRG 331 (513)
Q Consensus 299 V~~l~~~~----~~~~l~sg~~dg~i~iwd~~~~~~~ 331 (513)
+.+++++. +..+|++-+.|+++++||+.+++..
T Consensus 217 ~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~ 253 (547)
T PF11715_consen 217 AASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCL 253 (547)
T ss_dssp EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEE
T ss_pred cceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEE
Confidence 56666666 6689999999999999999998863
No 490
>COG1773 Rubredoxin [Energy production and conversion]
Probab=37.26 E-value=14 Score=25.11 Aligned_cols=10 Identities=50% Similarity=0.916 Sum_probs=7.3
Q ss_pred CccccccccC
Q 037288 6 PGFYYDAEKN 15 (513)
Q Consensus 6 pg~y~d~~~~ 15 (513)
=||-||||+.
T Consensus 9 CG~vYd~e~G 18 (55)
T COG1773 9 CGYVYDPEKG 18 (55)
T ss_pred CceEeccccC
Confidence 3788888875
No 491
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=37.17 E-value=7.2e+02 Score=28.83 Aligned_cols=137 Identities=7% Similarity=0.053 Sum_probs=75.2
Q ss_pred cEEEEEeC---------CCeEEEEECCC-----Ccc--cccccc--ccccCcCeEEEeeCC-eEEEeE------eec-cc
Q 037288 309 NVVLCGFR---------NGAIVTVDVRK-----RQR--GCSSRA--GRRHRIPYSRLQRND-RVTNEQ------WFE-LK 362 (513)
Q Consensus 309 ~~l~sg~~---------dg~i~iwd~~~-----~~~--~~~~~~--~~~h~~~v~~v~~~~-~~~s~~------w~~-~~ 362 (513)
.+|++|.. -|.+.++|+-. +++ ...++. ....+++|.+++--. .++++. |.+ +.
T Consensus 1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV~G~l~~~~GqKI~v~~l~r~ 1126 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEVRGHLLSSQGQKIIVRKLDRD 1126 (1366)
T ss_pred ceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEeccEEEEccCcEEEEEEeccC
Confidence 47777743 38999999753 111 111222 234577888777655 555554 776 55
Q ss_pred CcccceeEeecCCCceEEEEEcCCCCEEEEEecCCeEEEEecCCCCcc-ceEEecCCCCceeEEEEEEcCCCC--EEEEE
Q 037288 363 ANIWPSHTTFMPSSISCLQSLQLYDQYFLASSMDGTVKLYDHRLTTRG-AVQSYEGHVNSHTRIQLGVDQSER--FVMSG 439 (513)
Q Consensus 363 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~s~dg~i~lwd~~~~~~~-~~~~~~~h~~~v~~~~~~~s~~g~--~l~sg 439 (513)
+.+.+..-+..+-.+.++.. -.++++.|.--..|.+.-.. +.. .+..+.....+..+.+..|--+|. .++++
T Consensus 1127 ~~ligVaFiD~~~yv~s~~~---vknlIl~gDV~ksisfl~fq--eep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvs 1201 (1366)
T KOG1896|consen 1127 SELIGVAFIDLPLYVHSMKV---VKNLILAGDVMKSISFLGFQ--EEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVS 1201 (1366)
T ss_pred CcceeeEEeccceeEEehhh---hhhheehhhhhhceEEEEEc--cCceEEEEeecCCchhhceeeeeEEcCCeeEEEEE
Confidence 55555544444444444333 25677777766667666553 222 222222222333333355544444 56788
Q ss_pred eCCCcEEEEeC
Q 037288 440 GEDCKLRIWSI 450 (513)
Q Consensus 440 ~~Dg~v~vwd~ 450 (513)
..|+.|+++-.
T Consensus 1202 Da~rNi~vy~Y 1212 (1366)
T KOG1896|consen 1202 DADRNIHVYMY 1212 (1366)
T ss_pred cCCCcEEEEEe
Confidence 88999998843
No 492
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=36.14 E-value=5e+02 Score=26.68 Aligned_cols=57 Identities=16% Similarity=0.046 Sum_probs=39.4
Q ss_pred eccccCcEEEEEEcCCCCEEEEEe-CCeEEEEECCCCcEEEE--e----e--eCCCeEEEEEecCC
Q 037288 252 VASFKCTVWTADFCTNPSQAVIGT-NLGAAMVDMETGMASWV--C----R--SKSDILAQQVIHSG 308 (513)
Q Consensus 252 ~~~h~~~V~~~~~s~~g~~l~s~s-~~~i~vwd~~~~~~~~~--~----~--~~~~V~~l~~~~~~ 308 (513)
+...-..-+.++|.|||++|++-- .+.|++++..++..... + . .......|+|+|+-
T Consensus 25 va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 25 LLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred EECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 333445779999999999988876 58898888665532211 1 1 24558999999873
No 493
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=35.59 E-value=3.9e+02 Score=25.36 Aligned_cols=53 Identities=13% Similarity=0.169 Sum_probs=37.0
Q ss_pred eEEEEECCCCcEEEEee-eCCCeEEEEEecCCcEEEEEe------CCCeEEEEECCCCcc
Q 037288 278 GAAMVDMETGMASWVCR-SKSDILAQQVIHSGNVVLCGF------RNGAIVTVDVRKRQR 330 (513)
Q Consensus 278 ~i~vwd~~~~~~~~~~~-~~~~V~~l~~~~~~~~l~sg~------~dg~i~iwd~~~~~~ 330 (513)
.|.+||..+.+-...-. -.+.|++++|..+.++++.|. ....+-.||+.+...
T Consensus 17 ~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w 76 (281)
T PF12768_consen 17 GLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW 76 (281)
T ss_pred EEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee
Confidence 38899988765333222 446699999986777777774 356778888887754
No 494
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=35.52 E-value=16 Score=24.39 Aligned_cols=11 Identities=27% Similarity=0.667 Sum_probs=8.6
Q ss_pred CccccccccCc
Q 037288 6 PGFYYDAEKNR 16 (513)
Q Consensus 6 pg~y~d~~~~~ 16 (513)
=||.||||+.-
T Consensus 7 CgyiYd~~~Gd 17 (50)
T cd00730 7 CGYIYDPAEGD 17 (50)
T ss_pred CCeEECCCCCC
Confidence 38999998863
No 495
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=34.58 E-value=4.1e+02 Score=25.25 Aligned_cols=29 Identities=17% Similarity=0.123 Sum_probs=16.4
Q ss_pred CeEEEEECCCCccccccccccccCcCeEEEee
Q 037288 318 GAIVTVDVRKRQRGCSSRAGRRHRIPYSRLQR 349 (513)
Q Consensus 318 g~i~iwd~~~~~~~~~~~~~~~h~~~v~~v~~ 349 (513)
..|++||..+.+... ...+-.+.|.++.|
T Consensus 16 ~~lC~yd~~~~qW~~---~g~~i~G~V~~l~~ 44 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSS---PGNGISGTVTDLQW 44 (281)
T ss_pred CEEEEEECCCCEeec---CCCCceEEEEEEEE
Confidence 468899988777543 22223444555444
No 496
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.46 E-value=6.4e+02 Score=27.49 Aligned_cols=143 Identities=12% Similarity=0.110 Sum_probs=73.3
Q ss_pred cEEEEEEcCCCCEEEEEeCCeEEEEECCCCcEEE-Ee---eeCCCeEEEEEecCCcEEEEEeCCCeEEEE-ECCCCcccc
Q 037288 258 TVWTADFCTNPSQAVIGTNLGAAMVDMETGMASW-VC---RSKSDILAQQVIHSGNVVLCGFRNGAIVTV-DVRKRQRGC 332 (513)
Q Consensus 258 ~V~~~~~s~~g~~l~s~s~~~i~vwd~~~~~~~~-~~---~~~~~V~~l~~~~~~~~l~sg~~dg~i~iw-d~~~~~~~~ 332 (513)
.+-.+.|+.+..+|+..-+++++++++....... .. .....|..+.|..+|-.+++. +|.+.+- +........
T Consensus 85 ~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt~--~g~v~~i~~~~~~~~~~ 162 (829)
T KOG2280|consen 85 ELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVAVLTV--SGQVILINGVEEPKLRK 162 (829)
T ss_pred CeeeecccCCceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCceEEEec--CCcEEEEcCCCcchhhh
Confidence 7889999999999999999999999986432211 11 133446666666566544444 4555543 333222111
Q ss_pred ccccccccCcCeEEEee-CC----eEEEeE--------eecccCcccceeEeecC-CCceEEEEEcCCCCEEEEEecCCe
Q 037288 333 SSRAGRRHRIPYSRLQR-ND----RVTNEQ--------WFELKANIWPSHTTFMP-SSISCLQSLQLYDQYFLASSMDGT 398 (513)
Q Consensus 333 ~~~~~~~h~~~v~~v~~-~~----~~~s~~--------w~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~s~s~dg~ 398 (513)
+...+....+..+... .| .++..- +....+... .+.+.-+ +.+.. +..+++.++|+--..+|.
T Consensus 163 -~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q-~~~~~~~~~~~~k-i~VS~n~~~laLyt~~G~ 239 (829)
T KOG2280|consen 163 -MPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQ-LHALSWPNSSVVK-ISVSPNRRFLALYTETGK 239 (829)
T ss_pred -CCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceeccccc-ccccCCCCceEEE-EEEcCCcceEEEEecCCc
Confidence 1121222222111111 11 000000 111111111 1111112 33333 477889999999999999
Q ss_pred EEEEecC
Q 037288 399 VKLYDHR 405 (513)
Q Consensus 399 i~lwd~~ 405 (513)
|.+-+..
T Consensus 240 i~~vs~D 246 (829)
T KOG2280|consen 240 IWVVSID 246 (829)
T ss_pred EEEEecc
Confidence 9998876
No 497
>PLN02193 nitrile-specifier protein
Probab=34.42 E-value=5.3e+02 Score=26.53 Aligned_cols=26 Identities=4% Similarity=-0.019 Sum_probs=18.8
Q ss_pred CCCEEEEEeCC----CcEEEEeCCCCeEEE
Q 037288 432 SERFVMSGGED----CKLRIWSIRSGELVF 457 (513)
Q Consensus 432 ~g~~l~sg~~D----g~v~vwd~~~~~~~~ 457 (513)
++++++.|+.+ ..+.+||+.+.+-..
T Consensus 328 ~gkiyviGG~~g~~~~dv~~yD~~t~~W~~ 357 (470)
T PLN02193 328 QGKVWVVYGFNGCEVDDVHYYDPVQDKWTQ 357 (470)
T ss_pred CCcEEEEECCCCCccCceEEEECCCCEEEE
Confidence 57777777765 458999998876543
No 498
>PF09003 Phage_integ_N: Bacteriophage lambda integrase, N-terminal domain ; InterPro: IPR015094 The amino terminal domain of bacteriophage lambda integrase folds into a three-stranded, antiparallel beta-sheet that packs against a C-terminal alpha-helix, adopting a fold that is structurally related to the three-stranded beta-sheet family of DNA-binding domains (which includes the GCC-box DNA-binding domain and the N-terminal domain of Tn916 integrase). This domain is responsible for high-affinity binding to each of the five DNA arm-type sites and is also a context-sensitive modulator of DNA cleavage []. ; GO: 0003677 DNA binding, 0008907 integrase activity, 0015074 DNA integration; PDB: 1Z1G_B 1Z1B_A 2WCC_3 1KJK_A.
Probab=34.21 E-value=15 Score=26.76 Aligned_cols=14 Identities=21% Similarity=0.683 Sum_probs=8.0
Q ss_pred ccc-c-ccccCccccc
Q 037288 7 GFY-Y-DAEKNRYFPI 20 (513)
Q Consensus 7 g~y-~-d~~~~~yf~~ 20 (513)
||| | ||.++++|-+
T Consensus 27 ~Yy~Yr~P~tGk~~~L 42 (75)
T PF09003_consen 27 GYYQYRNPITGKEHGL 42 (75)
T ss_dssp SEEEEE-TTTS-EEEE
T ss_pred eEEEEecCCCCceeeC
Confidence 655 5 6777777766
No 499
>PF00414 MAP1B_neuraxin: Neuraxin and MAP1B repeat; InterPro: IPR000102 In microtubule-associated protein 1B (MAP1B) the basic region containing the KKEE and KKEVI motifs is responsible for the interaction between MAP1B and microtubules in vivo. This region bears no sequence relationship to the microtubule binding domains of kinesin, MAP2, or tau []. Neuraxin is a putative structural protein of the rat central nervous system that is immunologically related to microtubule-associated protein 5 (MAP5). Neuraxin may be implicated in neuronal membrane-microtubule interactions []. Both proteins contain a region that consists of 12 tandem repeats of a 17 residues motif.
Probab=33.92 E-value=20 Score=17.83 Aligned_cols=11 Identities=18% Similarity=0.603 Sum_probs=8.3
Q ss_pred CCCCCcccccc
Q 037288 2 PQELPGFYYDA 12 (513)
Q Consensus 2 ~~~~pg~y~d~ 12 (513)
.|+-+||+|..
T Consensus 4 tP~~s~YsYE~ 14 (17)
T PF00414_consen 4 TPDDSGYSYET 14 (17)
T ss_pred CCCcCCceeEe
Confidence 47888999853
No 500
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=33.76 E-value=81 Score=33.77 Aligned_cols=57 Identities=2% Similarity=-0.006 Sum_probs=38.3
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCeEEEEEcCCCceEEeeCCC
Q 037288 427 LGVDQSERFVMSGGEDCKLRIWSIRSGELVFEDKFSNSVPSAVCWRTQRSMGPQIEGK 484 (513)
Q Consensus 427 ~~~s~~g~~l~sg~~Dg~v~vwd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~~t~~~~ 484 (513)
+.-+|.|.-++.+.+||.|.+|+............ .-|-..+.|...+.+.+|+++.
T Consensus 20 iqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~-~~p~~nlv~tnhgl~~~tsdrr 76 (1636)
T KOG3616|consen 20 IQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEE-AKPKENLVFTNHGLVTATSDRR 76 (1636)
T ss_pred eeecCCCceEEEEecCCcEEEEeecccchhhhhhh-cCCccceeeeccceEEEeccch
Confidence 66679999999999999999999876554222211 2234455666666666666544
Done!