BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037291
(349 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
pdb|3OZI|B Chain B, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
Length = 204
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/136 (40%), Positives = 79/136 (58%), Gaps = 3/136 (2%)
Query: 2 DDEKLRRGDEISDALLNAIQGSKISVVIFSKDYGSSKWCLNELVKILECKHTN-RQIIIP 60
DD++L +G EI LL AI SKI V I S Y SKWCL EL +I+ + + R+II+P
Sbjct: 69 DDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILP 128
Query: 61 VFYGVSPSDVRHQTGIFKHGFDQLKQHFEEKPEMVQRWRDALRETSGLAGHESTKFRHDA 120
+FY V PSDVRHQTG +K F + F+ + +Q W+DAL++ L G K
Sbjct: 129 IFYMVDPSDVRHQTGCYKKAFRKHANKFDG--QTIQNWKDALKKVGDLKGWHIGKNDKQG 186
Query: 121 ELVNKIVEDVLKNLEK 136
+ +K+ D+ ++ K
Sbjct: 187 AIADKVSADIWSHISK 202
>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana
Length = 176
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 79/130 (60%), Gaps = 6/130 (4%)
Query: 2 DDEKLRRGDEISDALLNAIQGSKISVVIFSKDYGSSKWCLNELVKILECKHTNRQIIIPV 61
DD++L G S L + I+ S+ +VV+ S++Y +S WCL+ELV I++ + ++P+
Sbjct: 42 DDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPI 101
Query: 62 FYGVSPSDVRHQTGIFKHGFDQLKQHFE-EKPEMVQRWRDALRETSGLAGHESTKFRHDA 120
FYGV P+ VR QTG+ +Q K+H E PE V +WR AL + L+G S D+
Sbjct: 102 FYGVEPNHVRWQTGVLA---EQFKKHASREDPEKVLKWRQALTNFAQLSGDCSGD--DDS 156
Query: 121 ELVNKIVEDV 130
+LV+KI ++
Sbjct: 157 KLVDKIANEI 166
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 84/187 (44%), Gaps = 22/187 (11%)
Query: 172 VGIWGMGGIGKTTLA-EAIFDQ--FTGEFDGSCFMSDVRRNSETG--GGLEHL-----QK 221
V I+GM G GK+ LA EA+ D G F G + + ++G L++L Q+
Sbjct: 150 VTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQE 209
Query: 222 EMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEVGQLEGLIGELDQFGPGSRI 281
E S L +E A + + + L++LDDV + L+ F +I
Sbjct: 210 ESFSQRLPLNIEEAKDRLRVLMLRK--HPRSLLILDDVWDPWVLKA-------FDNQCQI 260
Query: 282 VVTTRDKGVLEKFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYA 341
++TTRDK V + G + + +GL E+ E F N +L + +++
Sbjct: 261 LLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFV---NMKKEDLPAEAHSIIKEC 317
Query: 342 KGNPLVL 348
KG+PLV+
Sbjct: 318 KGSPLVV 324
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 83/189 (43%), Gaps = 26/189 (13%)
Query: 172 VGIWGMGGIGKTTLA-EAIFDQ--FTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTIL 228
V I GM G GK+ LA EA+ D G F G V + ++G L LQ L T L
Sbjct: 150 VTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGL-LMKLQN--LCTRL 206
Query: 229 SEKLEVAGANIPHFTKERVWRMKVL---------IVLDDVNEVGQLEGLIGELDQFGPGS 279
+ E +P +E R+++L ++LDDV + L+ F
Sbjct: 207 DQD-ESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKA-------FDSQC 258
Query: 280 RIVVTTRDKGVLEKFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVE 339
+I++TTRDK V + G + + + L E+ E F N +L + +++
Sbjct: 259 QILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFV---NMKKADLPEQAHSIIK 315
Query: 340 YAKGNPLVL 348
KG+PLV+
Sbjct: 316 ECKGSPLVV 324
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 83/187 (44%), Gaps = 22/187 (11%)
Query: 172 VGIWGMGGIGKTTLA-EAIFDQ--FTGEFDGSCFMSDVRRNSETG--GGLEHL-----QK 221
V I+GM G GK+ LA EA+ D G F G + + ++G L++L Q+
Sbjct: 157 VTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQE 216
Query: 222 EMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEVGQLEGLIGELDQFGPGSRI 281
E S L +E A + + + L++LDDV + L+ F +I
Sbjct: 217 ESFSQRLPLNIEEAKDRLRVLMLRK--HPRSLLILDDVWDPWVLKA-------FDNQCQI 267
Query: 282 VVTTRDKGVLEKFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYA 341
++TT DK V + G + + +GL E+ E F N +L + +++
Sbjct: 268 LLTTSDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFV---NMKKEDLPAEAHSIIKEC 324
Query: 342 KGNPLVL 348
KG+PLV+
Sbjct: 325 KGSPLVV 331
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 83/189 (43%), Gaps = 26/189 (13%)
Query: 172 VGIWGMGGIGKTTLA-EAIFDQ--FTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTIL 228
V I GM G GK+ LA EA+ D G F G V + ++G L LQ L T L
Sbjct: 156 VTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGL-LMKLQN--LCTRL 212
Query: 229 SEKLEVAGANIPHFTKERVWRMKVL---------IVLDDVNEVGQLEGLIGELDQFGPGS 279
+ E +P +E R+++L ++LDDV + L+ F
Sbjct: 213 DQD-ESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKA-------FDSQC 264
Query: 280 RIVVTTRDKGVLEKFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVE 339
+I++TTRDK V + G + + + L E+ E F N +L + +++
Sbjct: 265 QILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFV---NMKKADLPEQAHSIIK 321
Query: 340 YAKGNPLVL 348
KG+PLV+
Sbjct: 322 ECKGSPLVV 330
>pdb|3H16|A Chain A, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|B Chain B, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|C Chain C, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|D Chain D, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
Length = 154
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 36/69 (52%)
Query: 2 DDEKLRRGDEISDALLNAIQGSKISVVIFSKDYGSSKWCLNELVKILECKHTNRQIIIPV 61
DD LR GD + ++ + S+ +V+ S + +W EL + + + + R I+P+
Sbjct: 53 DDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRILPI 112
Query: 62 FYGVSPSDV 70
++ VS +V
Sbjct: 113 WHKVSKDEV 121
>pdb|2Q27|A Chain A, Crystal Structure Of Oxalyl-Coa Decarboxylase From
Escherichia Coli
pdb|2Q27|B Chain B, Crystal Structure Of Oxalyl-Coa Decarboxylase From
Escherichia Coli
pdb|2Q28|A Chain A, Crystal Structure Of Oxalyl-Coa Decarboxylase From
Escherichia Coli In Complex With
Adenosine-5`-Diphosphate
pdb|2Q28|B Chain B, Crystal Structure Of Oxalyl-Coa Decarboxylase From
Escherichia Coli In Complex With
Adenosine-5`-Diphosphate
pdb|2Q29|A Chain A, Crystal Structure Of Oxalyl-Coa Decarboxylase From
Escherichia Coli In Complex With Acetyl Coenzyme A
pdb|2Q29|B Chain B, Crystal Structure Of Oxalyl-Coa Decarboxylase From
Escherichia Coli In Complex With Acetyl Coenzyme A
Length = 564
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 58/137 (42%), Gaps = 28/137 (20%)
Query: 53 TNRQIIIPVFYGVSPSDVRHQTGIFKHGFDQLKQHFEEKPEMVQRWRDAL---RETSGLA 109
+NR I +PV ++ S + +LKQ+ P + WRD L ++ +
Sbjct: 310 SNRPIAVPVVGDIASS--------MQGMLAELKQNTFTTPLV---WRDILNIHKQQNAQK 358
Query: 110 GHESTKFRHDAELVN-----KIVEDVLKNLEKITVATDSSNGLVGLNSRIEQIKPFLCMD 164
HE K D + +N V DVL+ + I + + +N L + I+ KP +D
Sbjct: 359 MHE--KLSTDTQPLNYFNALSAVRDVLRENQDIYLVNEGANTLDNARNIIDMYKPRRRLD 416
Query: 165 LSDTVQIVGIWGMGGIG 181
G WG+ GIG
Sbjct: 417 -------CGTWGVMGIG 426
>pdb|2O5V|A Chain A, Recombination Mediator Recf
Length = 359
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 171 IVGIWGMGGIGKTTLAEAIFDQFTGEFD 198
+ GI+G G GKT L EA + TG+ D
Sbjct: 28 VTGIYGENGAGKTNLLEAAYLALTGQTD 55
>pdb|4DRF|A Chain A, Crystal Structure Of Bacterial Pnkp-CHEN1-N Heterodimer
pdb|4DRF|C Chain C, Crystal Structure Of Bacterial Pnkp-CHEN1-N Heterodimer
pdb|4E6N|A Chain A, Crystal Structure Of Bacterial Pnkp-CHEN1-N Heterodimer
pdb|4E6N|C Chain C, Crystal Structure Of Bacterial Pnkp-CHEN1-N Heterodimer
Length = 427
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
Query: 36 SSKWCLNELVKILECKHTNRQIIIPVFYGVSPSDVRHQTGIFKHGFDQLKQHFEEKPEMV 95
S + L+E VK+L+ N+ + DV QT ++L Q F E+ EM+
Sbjct: 186 SGRVVLDEAVKLLKQASLNKTVSF---------DVSRQTSGKNADINELLQRFTERSEMM 236
Query: 96 QRWRDALRE 104
Q++ +A R+
Sbjct: 237 QKYVEAYRK 245
>pdb|1ZUN|B Chain B, Crystal Structure Of A Gtp-Regulated Atp Sulfurylase
Heterodimer From Pseudomonas Syringae
Length = 434
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 270 GELDQFGPGSRIVVTTRDKGVLEKFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTN 329
GEL+Q GPG + +T D+ ++ RG + +H N + +AF+ + +E P
Sbjct: 295 GELEQAGPGQAVTLTXEDE--IDISRG-DLLVHADNVPQVSDAFDAXLVWXAEEPXLPGK 351
Query: 330 LNWHSRRVVEYAKGN 344
+ +R Y G+
Sbjct: 352 -KYDIKRATSYVPGS 365
>pdb|3TY9|A Chain A, Crystal Structure Of C. Thermocellum Pnkp Ligase Domain
Amp-Adenylate
pdb|3TY9|B Chain B, Crystal Structure Of C. Thermocellum Pnkp Ligase Domain
Amp-Adenylate
pdb|3TY9|C Chain C, Crystal Structure Of C. Thermocellum Pnkp Ligase Domain
Amp-Adenylate
pdb|3TY9|D Chain D, Crystal Structure Of C. Thermocellum Pnkp Ligase Domain
Amp-Adenylate
Length = 393
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
Query: 36 SSKWCLNELVKILECKHTNRQIIIPVFYGVSPSDVRHQTGIFKHGFDQLKQHFEEKPEMV 95
S + L+E VK+L+ N+ + DV QT ++L Q F E+ EM+
Sbjct: 152 SGRVVLDEAVKLLKQASLNKTVSF---------DVSRQTSGKNADINELLQRFTERSEMM 202
Query: 96 QRWRDALRE 104
Q++ +A R+
Sbjct: 203 QKYVEAYRK 211
>pdb|3TY5|A Chain A, Crystal Structure Of C. Thermocellum Pnkp Ligase Domain In
Complex With Atp
pdb|3TY5|B Chain B, Crystal Structure Of C. Thermocellum Pnkp Ligase Domain In
Complex With Atp
Length = 413
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
Query: 36 SSKWCLNELVKILECKHTNRQIIIPVFYGVSPSDVRHQTGIFKHGFDQLKQHFEEKPEMV 95
S + L+E VK+L+ N+ + DV QT ++L Q F E+ EM+
Sbjct: 172 SGRVVLDEAVKLLKQASLNKTVSF---------DVSRQTSGKNADINELLQRFTERSEMM 222
Query: 96 QRWRDALRE 104
Q++ +A R+
Sbjct: 223 QKYVEAYRK 231
>pdb|3TY8|A Chain A, Crystal Structure Of C. Thermocellum Pnkp Ligase Domain
Apo Form
pdb|3TY8|B Chain B, Crystal Structure Of C. Thermocellum Pnkp Ligase Domain
Apo Form
Length = 413
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
Query: 36 SSKWCLNELVKILECKHTNRQIIIPVFYGVSPSDVRHQTGIFKHGFDQLKQHFEEKPEMV 95
S + L+E VK+L+ N+ + DV QT ++L Q F E+ EM+
Sbjct: 172 SGRVVLDEAVKLLKQASLNKTVSF---------DVSRQTSGKNADINELLQRFTERSEMM 222
Query: 96 QRWRDALRE 104
Q++ +A R+
Sbjct: 223 QKYVEAYRK 231
>pdb|1SKY|E Chain E, Crystal Structure Of The Nucleotide Free Alpha3beta3
Sub-Complex Of F1-Atpase From The Thermophilic Bacillus
Ps3
Length = 473
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 172 VGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEK 231
+G++G G+GKT L + + E G + V + G L H K+ S ++S+
Sbjct: 154 IGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAGVGERTREGNDLYHEMKD--SGVISKT 211
Query: 232 LEVAG-ANIPHFTKERV 247
V G N P + RV
Sbjct: 212 AMVFGQMNEPPGARMRV 228
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 170 QIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSC 201
+I+GI G GIGKTT A + + T + +GS
Sbjct: 295 EIIGILGPNGIGKTTFARILVGEITAD-EGSV 325
>pdb|2X7M|A Chain A, Crystal Structure Of Archaemetzincin (Amza) From
Methanopyrus Kandleri At 1.5 A Resolution
Length = 195
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 288 KGVLEKFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCP 327
+ +L+ RG + + RV GL E+ + NF F + CP
Sbjct: 77 RALLDTLRGMKGEYDRVLGLTSEDLYAPGLNFVFGQARCP 116
>pdb|2QE7|D Chain D, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|E Chain E, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|F Chain F, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
Length = 462
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 172 VGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEK 231
+G++G G+GKT L + + + E G + V + G L H K+ S ++S+
Sbjct: 147 IGLFGGAGVGKTVLIQELINNVAQEHGGLSVFAGVGERTREGNDLYHEMKD--SGVISKT 204
Query: 232 LEVAG-ANIPHFTKERV 247
V G N P + RV
Sbjct: 205 SMVFGQMNEPPGARLRV 221
>pdb|3IYK|G Chain G, Bluetongue Virus Structure Reveals A Sialic Acid Binding
Dom Amphipathic Helices And A Central Coiled Coil In The
Outer Proteins
pdb|3IYK|I Chain I, Bluetongue Virus Structure Reveals A Sialic Acid Binding
Dom Amphipathic Helices And A Central Coiled Coil In The
Outer Proteins
pdb|3IYK|K Chain K, Bluetongue Virus Structure Reveals A Sialic Acid Binding
Dom Amphipathic Helices And A Central Coiled Coil In The
Outer Proteins
Length = 600
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Query: 292 EKFRGEEKKIH-RVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNPLVL 348
EK R +EK I+ RVN +F K H LN HS R + YA+GNP L
Sbjct: 398 EKTREQEKYIYGRVNLFDF------VAEPGIKIVHWEYRLN-HSTREITYAQGNPCDL 448
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 65 VSPSDVRHQTGIFKHGFDQLKQHFEEKPEMVQRWRDALRETSGLAGHESTKFRHDAELVN 124
V PSD + T + ++ + + + ++V+RW +GL + ST D E V
Sbjct: 75 VVPSDKGNYTCVVENEYGSINHTYHL--DVVERWPHRPILQAGLPANASTVVGGDVEFVC 132
Query: 125 KIVEDVLKNLEKI 137
K+ D +++ I
Sbjct: 133 KVYSDAQPHIQWI 145
>pdb|1V8Z|A Chain A, X-Ray Crystal Structure Of The Tryptophan Synthase B2
Subunit From Hyperthermophile, Pyrococcus Furiosus
pdb|1V8Z|B Chain B, X-Ray Crystal Structure Of The Tryptophan Synthase B2
Subunit From Hyperthermophile, Pyrococcus Furiosus
pdb|1V8Z|C Chain C, X-Ray Crystal Structure Of The Tryptophan Synthase B2
Subunit From Hyperthermophile, Pyrococcus Furiosus
pdb|1V8Z|D Chain D, X-Ray Crystal Structure Of The Tryptophan Synthase B2
Subunit From Hyperthermophile, Pyrococcus Furiosus
Length = 388
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 202 FMSDVRRNSETGGGLEHLQKEMLSTILSEKLEV-AGANIPHFTKERVWRMKVL 253
FM R +ETG G + M +L K+++ GA K V+RMK+L
Sbjct: 95 FMGKTRLIAETGAGQHGVATAMAGALLGMKVDIYMGAEDVERQKMNVFRMKLL 147
>pdb|1WDW|B Chain B, Structural Basis Of Mutual Activation Of The Tryptophan
Synthase A2b2 Complex From A Hyperthermophile,
Pyrococcus Furiosus
pdb|1WDW|D Chain D, Structural Basis Of Mutual Activation Of The Tryptophan
Synthase A2b2 Complex From A Hyperthermophile,
Pyrococcus Furiosus
pdb|1WDW|F Chain F, Structural Basis Of Mutual Activation Of The Tryptophan
Synthase A2b2 Complex From A Hyperthermophile,
Pyrococcus Furiosus
pdb|1WDW|H Chain H, Structural Basis Of Mutual Activation Of The Tryptophan
Synthase A2b2 Complex From A Hyperthermophile,
Pyrococcus Furiosus
pdb|1WDW|J Chain J, Structural Basis Of Mutual Activation Of The Tryptophan
Synthase A2b2 Complex From A Hyperthermophile,
Pyrococcus Furiosus
pdb|1WDW|L Chain L, Structural Basis Of Mutual Activation Of The Tryptophan
Synthase A2b2 Complex From A Hyperthermophile,
Pyrococcus Furiosus
Length = 385
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 202 FMSDVRRNSETGGGLEHLQKEMLSTILSEKLEV-AGANIPHFTKERVWRMKVL 253
FM R +ETG G + M +L K+++ GA K V+RMK+L
Sbjct: 95 FMGKTRLIAETGAGQHGVATAMAGALLGMKVDIYMGAEDVERQKMNVFRMKLL 147
>pdb|2E7S|A Chain A, Crystal Structure Of The Yeast Sec2p Gef Domain
pdb|2E7S|B Chain B, Crystal Structure Of The Yeast Sec2p Gef Domain
pdb|2E7S|C Chain C, Crystal Structure Of The Yeast Sec2p Gef Domain
pdb|2E7S|D Chain D, Crystal Structure Of The Yeast Sec2p Gef Domain
pdb|2E7S|E Chain E, Crystal Structure Of The Yeast Sec2p Gef Domain
pdb|2E7S|F Chain F, Crystal Structure Of The Yeast Sec2p Gef Domain
pdb|2E7S|G Chain G, Crystal Structure Of The Yeast Sec2p Gef Domain
pdb|2E7S|H Chain H, Crystal Structure Of The Yeast Sec2p Gef Domain
pdb|2E7S|I Chain I, Crystal Structure Of The Yeast Sec2p Gef Domain
pdb|2E7S|J Chain J, Crystal Structure Of The Yeast Sec2p Gef Domain
pdb|2E7S|K Chain K, Crystal Structure Of The Yeast Sec2p Gef Domain
pdb|2E7S|L Chain L, Crystal Structure Of The Yeast Sec2p Gef Domain
pdb|2E7S|M Chain M, Crystal Structure Of The Yeast Sec2p Gef Domain
pdb|2E7S|N Chain N, Crystal Structure Of The Yeast Sec2p Gef Domain
pdb|2E7S|O Chain O, Crystal Structure Of The Yeast Sec2p Gef Domain
pdb|2E7S|P Chain P, Crystal Structure Of The Yeast Sec2p Gef Domain
pdb|2E7S|Q Chain Q, Crystal Structure Of The Yeast Sec2p Gef Domain
pdb|2E7S|R Chain R, Crystal Structure Of The Yeast Sec2p Gef Domain
pdb|2E7S|S Chain S, Crystal Structure Of The Yeast Sec2p Gef Domain
pdb|2E7S|T Chain T, Crystal Structure Of The Yeast Sec2p Gef Domain
Length = 135
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 10/73 (13%)
Query: 77 FKHGFDQLKQHFEEKPEMVQRWRDALRETSGLAGHESTKFRHDAELVNKIVEDVLKNLEK 136
K ++ LK+ ++ + V+R R+ + + + L TK +A+ +NK VED+ +L
Sbjct: 30 LKEDYNTLKRELSDRDDEVKRLREDIAKENEL----RTKAEEEADKLNKEVEDLTASL-- 83
Query: 137 ITVATDSSNGLVG 149
D +N LV
Sbjct: 84 ----FDEANNLVA 92
>pdb|2XMO|A Chain A, The Crystal Structure Of Lmo2642
pdb|2XMO|B Chain B, The Crystal Structure Of Lmo2642
Length = 443
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 2 DDEKLRRGDEISDALLNAIQGSKISVVIFSKD 33
D ++L DEI+DA L ++ K V+I S D
Sbjct: 70 DGKQLAYSDEITDAFLADVESKKTDVLIISGD 101
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,658,223
Number of Sequences: 62578
Number of extensions: 452552
Number of successful extensions: 1402
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1387
Number of HSP's gapped (non-prelim): 38
length of query: 349
length of database: 14,973,337
effective HSP length: 100
effective length of query: 249
effective length of database: 8,715,537
effective search space: 2170168713
effective search space used: 2170168713
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)