Query 037291
Match_columns 349
No_of_seqs 284 out of 2658
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 10:44:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037291.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037291hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 2.1E-68 4.5E-73 559.1 32.7 338 3-349 46-393 (1153)
2 PLN03194 putative disease resi 100.0 2.7E-33 5.8E-38 227.1 11.4 119 1-136 59-179 (187)
3 PF00931 NB-ARC: NB-ARC domain 100.0 2.8E-32 6E-37 246.8 11.0 193 150-349 1-200 (287)
4 KOG4658 Apoptotic ATPase [Sign 100.0 2.6E-30 5.6E-35 260.6 14.8 192 148-349 161-360 (889)
5 PF01582 TIR: TIR domain; Int 99.7 5.3E-18 1.2E-22 136.7 2.5 102 2-103 34-140 (141)
6 PF01637 Arch_ATPase: Archaeal 99.5 2.9E-13 6.3E-18 118.2 10.0 191 147-348 1-231 (234)
7 smart00255 TIR Toll - interleu 99.4 7.2E-13 1.6E-17 106.6 10.4 92 14-106 46-138 (140)
8 PRK00411 cdc6 cell division co 99.4 9.9E-12 2.1E-16 117.5 16.0 174 142-320 27-220 (394)
9 TIGR03015 pepcterm_ATPase puta 99.4 1.4E-11 3E-16 110.4 15.8 174 168-348 42-235 (269)
10 TIGR02928 orc1/cdc6 family rep 99.4 3.1E-11 6.6E-16 113.0 17.9 199 142-345 12-240 (365)
11 PF05729 NACHT: NACHT domain 99.4 1.1E-11 2.5E-16 102.3 12.8 143 170-320 1-163 (166)
12 PRK04841 transcriptional regul 99.3 9.6E-11 2.1E-15 122.3 16.3 188 142-349 11-223 (903)
13 COG2256 MGS1 ATPase related to 99.3 1.3E-10 2.8E-15 105.1 13.8 148 166-343 45-204 (436)
14 TIGR00635 ruvB Holliday juncti 99.1 1.4E-10 3.1E-15 105.8 9.1 171 145-347 4-197 (305)
15 PRK00080 ruvB Holliday junctio 99.1 2.6E-10 5.6E-15 105.0 9.2 174 142-347 22-218 (328)
16 PRK06893 DNA replication initi 99.1 1.6E-09 3.5E-14 94.4 13.1 144 169-345 39-197 (229)
17 PRK13342 recombination factor 99.1 2.1E-09 4.7E-14 102.0 13.7 174 142-347 9-192 (413)
18 PTZ00202 tuzin; Provisional 99.1 6.1E-09 1.3E-13 96.1 16.0 212 95-319 193-433 (550)
19 PF05496 RuvB_N: Holliday junc 99.0 2.5E-09 5.5E-14 90.6 10.2 173 142-346 21-216 (233)
20 TIGR03420 DnaA_homol_Hda DnaA 99.0 3E-09 6.4E-14 92.7 10.9 169 144-348 14-198 (226)
21 PRK12402 replication factor C 99.0 1.6E-08 3.5E-13 93.5 15.0 193 142-345 12-220 (337)
22 PLN03025 replication factor C 99.0 2.2E-08 4.9E-13 91.8 15.5 181 142-345 10-194 (319)
23 PRK07003 DNA polymerase III su 99.0 1.4E-08 3.1E-13 99.9 14.3 188 142-345 13-214 (830)
24 PRK14961 DNA polymerase III su 98.9 3.4E-08 7.4E-13 92.1 16.0 184 142-346 13-215 (363)
25 PRK14949 DNA polymerase III su 98.9 1.8E-08 4E-13 100.9 14.8 182 142-345 13-214 (944)
26 PRK00440 rfc replication facto 98.9 2.1E-08 4.5E-13 92.0 14.3 182 142-346 14-198 (319)
27 COG1474 CDC6 Cdc6-related prot 98.9 4.5E-08 9.8E-13 90.7 16.2 197 142-343 14-229 (366)
28 PF13173 AAA_14: AAA domain 98.9 1.2E-08 2.5E-13 80.7 10.7 121 170-312 3-127 (128)
29 PRK08727 hypothetical protein; 98.9 2.5E-08 5.4E-13 87.2 13.2 143 169-344 41-197 (233)
30 TIGR01242 26Sp45 26S proteasom 98.9 1.9E-08 4.1E-13 94.1 13.1 176 143-344 120-327 (364)
31 COG3899 Predicted ATPase [Gene 98.9 9.3E-09 2E-13 105.2 11.2 197 147-348 2-257 (849)
32 PRK14963 DNA polymerase III su 98.9 4E-08 8.7E-13 94.9 14.9 182 142-345 11-211 (504)
33 PRK14960 DNA polymerase III su 98.9 4.8E-08 1E-12 95.2 15.2 177 142-345 12-213 (702)
34 PF13191 AAA_16: AAA ATPase do 98.9 5.8E-09 1.3E-13 87.7 7.9 51 146-196 1-51 (185)
35 PRK12323 DNA polymerase III su 98.9 3.1E-08 6.7E-13 96.3 13.6 194 142-346 13-220 (700)
36 PRK04195 replication factor C 98.9 2.3E-08 5E-13 96.8 12.6 176 142-344 11-195 (482)
37 PTZ00112 origin recognition co 98.9 7.8E-08 1.7E-12 95.6 15.9 175 142-321 752-950 (1164)
38 KOG2028 ATPase related to the 98.8 8.2E-08 1.8E-12 86.0 14.1 147 143-318 136-292 (554)
39 PRK14962 DNA polymerase III su 98.8 1.1E-07 2.5E-12 91.0 16.2 177 142-344 11-211 (472)
40 PRK07471 DNA polymerase III su 98.8 1.8E-07 3.9E-12 86.9 16.6 195 142-347 16-234 (365)
41 TIGR00678 holB DNA polymerase 98.8 3.2E-07 6.9E-12 77.6 16.5 90 249-347 95-187 (188)
42 cd00009 AAA The AAA+ (ATPases 98.8 4.4E-08 9.6E-13 78.5 10.7 123 148-289 1-131 (151)
43 PRK14957 DNA polymerase III su 98.8 2E-07 4.2E-12 90.5 16.4 177 142-345 13-214 (546)
44 PRK08903 DnaA regulatory inact 98.8 5.2E-08 1.1E-12 85.0 11.4 166 144-348 17-196 (227)
45 PRK06645 DNA polymerase III su 98.8 2.1E-07 4.6E-12 89.6 16.4 183 142-345 18-223 (507)
46 PRK09112 DNA polymerase III su 98.8 1.2E-07 2.6E-12 87.5 14.2 191 142-347 20-236 (351)
47 PRK14956 DNA polymerase III su 98.8 1.3E-07 2.8E-12 89.6 14.4 186 142-345 15-216 (484)
48 PRK08691 DNA polymerase III su 98.8 3.7E-08 8.1E-13 96.7 10.8 178 142-346 13-215 (709)
49 PRK14964 DNA polymerase III su 98.8 1.4E-07 3.1E-12 90.1 14.4 178 142-345 10-211 (491)
50 TIGR02397 dnaX_nterm DNA polym 98.8 2.8E-07 6.1E-12 85.9 16.0 180 142-347 11-214 (355)
51 PRK05564 DNA polymerase III su 98.8 2.7E-07 5.8E-12 84.5 15.5 173 145-346 4-185 (313)
52 PRK07994 DNA polymerase III su 98.8 1.7E-07 3.7E-12 92.3 14.7 182 142-345 13-214 (647)
53 PF13401 AAA_22: AAA domain; P 98.8 1.3E-08 2.8E-13 80.6 5.7 112 169-287 4-125 (131)
54 PRK07940 DNA polymerase III su 98.7 3E-07 6.6E-12 86.1 15.2 174 145-346 5-208 (394)
55 PRK08084 DNA replication initi 98.7 2.1E-07 4.6E-12 81.4 13.3 144 168-344 44-202 (235)
56 PRK13341 recombination factor 98.7 2.1E-07 4.6E-12 93.3 14.7 170 142-344 25-210 (725)
57 PRK14951 DNA polymerase III su 98.7 2.7E-07 5.9E-12 90.7 15.1 191 142-345 13-219 (618)
58 PRK14958 DNA polymerase III su 98.7 2.2E-07 4.7E-12 90.0 13.8 178 142-345 13-214 (509)
59 PF00308 Bac_DnaA: Bacterial d 98.7 1.7E-07 3.7E-12 81.1 11.7 154 168-345 33-202 (219)
60 PRK05642 DNA replication initi 98.7 2.8E-07 6E-12 80.6 13.0 143 169-344 45-201 (234)
61 PRK09087 hypothetical protein; 98.7 3.1E-07 6.8E-12 79.8 12.5 135 169-345 44-189 (226)
62 PRK03992 proteasome-activating 98.7 2.5E-07 5.4E-12 87.1 12.8 157 144-322 130-317 (389)
63 PRK14955 DNA polymerase III su 98.7 2.2E-07 4.8E-12 87.7 12.4 194 142-345 13-222 (397)
64 PRK14969 DNA polymerase III su 98.7 5.3E-07 1.2E-11 87.8 15.1 177 142-345 13-214 (527)
65 PRK14970 DNA polymerase III su 98.7 6E-07 1.3E-11 84.1 14.8 179 142-345 14-203 (367)
66 PRK05896 DNA polymerase III su 98.7 3.4E-07 7.5E-12 89.0 13.1 187 142-345 13-214 (605)
67 PRK14087 dnaA chromosomal repl 98.7 4.4E-07 9.5E-12 86.8 13.5 160 169-348 141-316 (450)
68 PHA02544 44 clamp loader, smal 98.6 3.1E-07 6.6E-12 84.3 12.0 149 142-317 18-170 (316)
69 PRK14952 DNA polymerase III su 98.6 1.1E-06 2.3E-11 86.1 16.3 181 142-345 10-213 (584)
70 TIGR02639 ClpA ATP-dependent C 98.6 3.7E-07 8E-12 92.8 13.3 171 122-320 164-358 (731)
71 PF13676 TIR_2: TIR domain; PD 98.6 4.7E-09 1E-13 79.4 -0.4 57 2-63 30-86 (102)
72 PRK07764 DNA polymerase III su 98.6 8.8E-07 1.9E-11 90.1 15.4 183 142-345 12-215 (824)
73 COG2909 MalT ATP-dependent tra 98.6 4.9E-07 1.1E-11 89.2 12.9 188 143-346 17-228 (894)
74 TIGR03345 VI_ClpV1 type VI sec 98.6 1.5E-06 3.2E-11 89.3 17.0 191 122-344 169-389 (852)
75 COG3903 Predicted ATPase [Gene 98.6 2.7E-08 5.9E-13 90.8 3.5 170 168-349 13-187 (414)
76 PRK14088 dnaA chromosomal repl 98.6 1.3E-06 2.9E-11 83.3 15.0 155 169-344 130-298 (440)
77 PRK09111 DNA polymerase III su 98.6 1.2E-06 2.6E-11 86.3 14.9 191 142-346 21-228 (598)
78 PRK14959 DNA polymerase III su 98.6 1.2E-06 2.6E-11 85.8 14.6 178 142-345 13-214 (624)
79 TIGR02881 spore_V_K stage V sp 98.6 7.4E-07 1.6E-11 79.4 11.8 134 168-321 41-192 (261)
80 PRK06305 DNA polymerase III su 98.6 2.1E-06 4.6E-11 82.2 15.3 180 142-345 14-216 (451)
81 PRK00149 dnaA chromosomal repl 98.5 1.1E-06 2.5E-11 84.4 13.3 154 168-345 147-316 (450)
82 PRK14954 DNA polymerase III su 98.5 2.1E-06 4.7E-11 84.6 15.3 195 142-345 13-222 (620)
83 PRK14953 DNA polymerase III su 98.5 2.7E-06 5.9E-11 82.0 15.6 178 142-346 13-215 (486)
84 TIGR03689 pup_AAA proteasome A 98.5 1.1E-06 2.4E-11 84.4 12.8 163 144-320 181-378 (512)
85 TIGR00362 DnaA chromosomal rep 98.5 1.4E-06 3E-11 82.7 13.5 155 169-345 136-304 (405)
86 PRK08451 DNA polymerase III su 98.5 3.6E-06 7.8E-11 81.4 16.0 183 142-345 11-212 (535)
87 PRK14950 DNA polymerase III su 98.5 3.7E-06 8.1E-11 83.3 16.3 190 142-346 13-216 (585)
88 PRK12422 chromosomal replicati 98.5 3.9E-06 8.5E-11 80.1 15.4 131 169-321 141-285 (445)
89 CHL00095 clpC Clp protease ATP 98.5 2.1E-06 4.5E-11 88.4 13.9 149 145-318 179-352 (821)
90 PRK07133 DNA polymerase III su 98.5 4E-06 8.8E-11 83.3 14.6 180 142-345 15-213 (725)
91 PRK05563 DNA polymerase III su 98.5 6.8E-06 1.5E-10 80.8 16.1 189 142-346 13-215 (559)
92 PRK06620 hypothetical protein; 98.4 1.8E-06 3.8E-11 74.4 10.5 128 170-344 45-182 (214)
93 PRK14086 dnaA chromosomal repl 98.4 3.4E-06 7.3E-11 82.3 13.5 132 169-322 314-461 (617)
94 TIGR03346 chaperone_ClpB ATP-d 98.4 4.8E-06 1E-10 86.0 15.3 156 144-320 172-349 (852)
95 PRK14965 DNA polymerase III su 98.4 3.9E-06 8.5E-11 82.8 13.9 180 142-345 13-214 (576)
96 PRK14948 DNA polymerase III su 98.4 4.5E-06 9.8E-11 82.7 14.1 192 142-346 13-217 (620)
97 PRK10865 protein disaggregatio 98.4 3.8E-06 8.3E-11 86.5 13.9 49 144-195 177-225 (857)
98 TIGR02903 spore_lon_C ATP-depe 98.4 5.1E-06 1.1E-10 82.6 14.1 49 142-193 151-199 (615)
99 PRK14971 DNA polymerase III su 98.4 7.5E-06 1.6E-10 81.2 15.2 177 142-345 14-216 (614)
100 PTZ00454 26S protease regulato 98.4 5.4E-06 1.2E-10 77.9 13.3 155 144-320 144-329 (398)
101 PF05621 TniB: Bacterial TniB 98.4 1.1E-05 2.4E-10 71.8 14.4 183 152-345 44-255 (302)
102 PRK06647 DNA polymerase III su 98.4 1.1E-05 2.5E-10 79.0 15.9 183 142-345 13-214 (563)
103 PTZ00361 26 proteosome regulat 98.4 3.7E-06 8E-11 79.7 11.9 155 145-321 183-368 (438)
104 KOG0989 Replication factor C, 98.4 3.3E-06 7.1E-11 74.3 10.2 182 142-344 33-223 (346)
105 cd01128 rho_factor Transcripti 98.3 1.1E-06 2.3E-11 77.2 6.9 90 168-260 15-113 (249)
106 CHL00181 cbbX CbbX; Provisiona 98.3 2.9E-05 6.3E-10 69.9 16.2 134 169-322 59-211 (287)
107 PF00004 AAA: ATPase family as 98.3 5.6E-06 1.2E-10 65.3 10.3 23 172-194 1-23 (132)
108 CHL00176 ftsH cell division pr 98.3 1.1E-05 2.5E-10 80.0 14.4 156 144-321 182-367 (638)
109 COG2255 RuvB Holliday junction 98.3 4.6E-06 1E-10 72.7 9.9 173 142-346 23-218 (332)
110 PRK05707 DNA polymerase III su 98.3 2E-05 4.2E-10 72.3 14.6 89 251-346 107-198 (328)
111 TIGR02880 cbbX_cfxQ probable R 98.3 1.2E-05 2.6E-10 72.4 13.0 131 171-321 60-209 (284)
112 PRK11034 clpA ATP-dependent Cl 98.3 4.8E-06 1E-10 84.2 11.3 47 145-194 186-232 (758)
113 KOG2543 Origin recognition com 98.3 1.8E-05 3.9E-10 71.7 13.5 168 143-319 4-192 (438)
114 PF14516 AAA_35: AAA-like doma 98.3 5.1E-05 1.1E-09 69.9 16.7 194 142-346 8-234 (331)
115 COG1222 RPT1 ATP-dependent 26S 98.3 3.1E-05 6.7E-10 69.8 14.3 153 145-320 151-335 (406)
116 PRK09376 rho transcription ter 98.3 1.6E-06 3.5E-11 79.8 6.4 90 168-260 168-266 (416)
117 PRK08116 hypothetical protein; 98.3 4.1E-06 8.8E-11 74.7 8.5 102 170-288 115-221 (268)
118 PRK12377 putative replication 98.2 4.3E-05 9.3E-10 67.1 14.7 36 169-204 101-136 (248)
119 TIGR01241 FtsH_fam ATP-depende 98.2 1.8E-05 3.9E-10 77.1 13.6 176 144-344 54-259 (495)
120 PRK07399 DNA polymerase III su 98.2 5.6E-05 1.2E-09 68.9 15.5 188 145-347 4-217 (314)
121 PRK08181 transposase; Validate 98.2 8.7E-06 1.9E-10 72.3 9.4 35 170-204 107-141 (269)
122 COG1373 Predicted ATPase (AAA+ 98.2 5.1E-05 1.1E-09 71.6 14.7 119 171-315 39-162 (398)
123 COG0593 DnaA ATPase involved i 98.2 3.7E-05 8.1E-10 71.6 13.0 133 168-321 112-258 (408)
124 TIGR00767 rho transcription te 98.1 6.4E-06 1.4E-10 76.3 7.7 90 168-260 167-265 (415)
125 TIGR00763 lon ATP-dependent pr 98.1 6.9E-05 1.5E-09 76.8 15.8 53 145-197 320-375 (775)
126 KOG2227 Pre-initiation complex 98.1 8.2E-05 1.8E-09 69.3 14.1 175 142-321 147-339 (529)
127 PLN00020 ribulose bisphosphate 98.1 9.8E-05 2.1E-09 67.5 14.1 153 168-346 147-333 (413)
128 PRK07952 DNA replication prote 98.1 9.1E-05 2E-09 64.9 13.6 36 169-204 99-134 (244)
129 PRK10536 hypothetical protein; 98.1 3.2E-05 7E-10 67.5 10.6 53 144-201 54-108 (262)
130 TIGR02640 gas_vesic_GvpN gas v 98.1 8E-05 1.7E-09 66.3 13.1 24 170-193 22-45 (262)
131 TIGR01243 CDC48 AAA family ATP 98.1 5.9E-05 1.3E-09 77.0 13.8 154 145-320 453-635 (733)
132 PF05673 DUF815: Protein of un 98.1 2.3E-05 5E-10 67.6 8.8 55 142-196 24-79 (249)
133 TIGR00602 rad24 checkpoint pro 98.1 2E-05 4.4E-10 77.9 9.5 53 142-194 81-135 (637)
134 PRK09183 transposase/IS protei 98.1 1.9E-05 4.1E-10 70.1 8.5 35 170-204 103-137 (259)
135 TIGR01243 CDC48 AAA family ATP 98.0 4.2E-05 9E-10 78.1 12.0 155 144-320 177-359 (733)
136 PRK10865 protein disaggregatio 98.0 7.1E-05 1.5E-09 77.3 13.6 51 144-194 567-623 (857)
137 PRK10787 DNA-binding ATP-depen 98.0 0.00028 6.1E-09 72.0 17.6 188 119-321 287-507 (784)
138 COG0466 Lon ATP-dependent Lon 98.0 0.00022 4.8E-09 69.8 15.7 185 119-322 288-510 (782)
139 TIGR02639 ClpA ATP-dependent C 98.0 0.00011 2.3E-09 75.1 14.3 164 144-320 453-662 (731)
140 smart00382 AAA ATPases associa 98.0 1.9E-05 4.1E-10 62.4 7.1 34 170-203 3-36 (148)
141 CHL00195 ycf46 Ycf46; Provisio 98.0 5E-05 1.1E-09 73.2 10.9 156 145-322 228-407 (489)
142 TIGR03346 chaperone_ClpB ATP-d 98.0 0.00012 2.5E-09 75.9 14.4 53 144-196 564-622 (852)
143 PF01695 IstB_IS21: IstB-like 98.0 7.4E-06 1.6E-10 68.4 4.4 36 169-204 47-82 (178)
144 PRK08769 DNA polymerase III su 98.0 0.00015 3.3E-09 66.0 13.0 90 249-347 112-204 (319)
145 COG3267 ExeA Type II secretory 98.0 0.00033 7.2E-09 60.5 13.9 176 166-348 48-242 (269)
146 PRK06526 transposase; Provisio 98.0 1.9E-05 4.2E-10 69.7 6.7 28 169-196 98-125 (254)
147 cd01131 PilT Pilus retraction 97.9 3.9E-05 8.6E-10 65.3 8.0 111 170-292 2-113 (198)
148 PRK11331 5-methylcytosine-spec 97.9 2E-05 4.4E-10 74.1 6.6 102 145-260 175-282 (459)
149 PRK06871 DNA polymerase III su 97.9 0.00049 1.1E-08 62.9 15.3 90 249-346 106-198 (325)
150 PRK08058 DNA polymerase III su 97.9 0.00025 5.3E-09 65.4 13.1 150 147-319 7-181 (329)
151 COG1223 Predicted ATPase (AAA+ 97.9 0.00013 2.9E-09 63.0 10.1 177 143-344 119-318 (368)
152 COG0542 clpA ATP-binding subun 97.9 7.6E-05 1.6E-09 74.6 10.0 133 144-287 490-643 (786)
153 PTZ00494 tuzin-like protein; P 97.9 0.00074 1.6E-08 63.0 15.3 212 95-319 302-543 (664)
154 COG0470 HolB ATPase involved i 97.9 0.00042 9.1E-09 63.6 14.1 146 147-314 3-175 (325)
155 PRK06921 hypothetical protein; 97.9 7.2E-05 1.6E-09 66.6 8.6 36 169-204 117-153 (266)
156 PRK11034 clpA ATP-dependent Cl 97.8 0.00011 2.4E-09 74.4 10.8 51 144-194 457-513 (758)
157 PRK07993 DNA polymerase III su 97.8 0.00024 5.2E-09 65.4 12.0 90 249-346 107-199 (334)
158 KOG0741 AAA+-type ATPase [Post 97.8 0.00073 1.6E-08 64.0 14.7 133 167-320 536-686 (744)
159 TIGR03345 VI_ClpV1 type VI sec 97.8 0.00015 3.3E-09 74.8 11.3 52 144-195 565-622 (852)
160 PF13177 DNA_pol3_delta2: DNA 97.8 0.00055 1.2E-08 56.3 12.4 137 151-308 3-162 (162)
161 COG2812 DnaX DNA polymerase II 97.8 0.00011 2.3E-09 70.6 9.2 185 142-344 13-213 (515)
162 PF10443 RNA12: RNA12 protein; 97.8 0.0013 2.8E-08 61.4 15.4 71 251-322 149-231 (431)
163 PRK00771 signal recognition pa 97.8 0.0011 2.5E-08 62.9 15.4 29 168-196 94-122 (437)
164 PRK08699 DNA polymerase III su 97.8 0.00059 1.3E-08 62.6 13.1 68 251-319 114-184 (325)
165 KOG0735 AAA+-type ATPase [Post 97.8 0.00049 1.1E-08 67.3 12.8 156 169-344 431-608 (952)
166 KOG0733 Nuclear AAA ATPase (VC 97.7 0.00029 6.3E-09 67.7 11.0 95 144-260 189-292 (802)
167 PRK08939 primosomal protein Dn 97.7 0.00019 4.2E-09 65.1 9.5 117 150-286 136-259 (306)
168 PRK13531 regulatory ATPase Rav 97.7 0.00015 3.2E-09 69.1 8.9 46 144-194 19-64 (498)
169 COG0542 clpA ATP-binding subun 97.7 0.00068 1.5E-08 67.9 13.8 156 144-320 169-346 (786)
170 PHA00729 NTP-binding motif con 97.7 0.00034 7.3E-09 60.1 10.2 27 168-194 16-42 (226)
171 CHL00095 clpC Clp protease ATP 97.7 0.00022 4.7E-09 73.7 10.7 133 144-287 508-661 (821)
172 PRK04132 replication factor C 97.7 0.00058 1.3E-08 69.6 13.3 150 174-345 569-725 (846)
173 PRK06964 DNA polymerase III su 97.7 0.002 4.3E-08 59.3 15.7 87 249-346 131-220 (342)
174 PRK06835 DNA replication prote 97.7 0.00016 3.4E-09 66.3 8.4 35 170-204 184-218 (329)
175 KOG0730 AAA+-type ATPase [Post 97.7 0.00012 2.6E-09 70.8 7.6 134 167-322 466-617 (693)
176 PF04665 Pox_A32: Poxvirus A32 97.7 6.5E-05 1.4E-09 65.2 5.0 35 170-204 14-48 (241)
177 PF07728 AAA_5: AAA domain (dy 97.7 7.6E-05 1.6E-09 59.6 5.0 22 172-193 2-23 (139)
178 KOG0744 AAA+-type ATPase [Post 97.6 0.00038 8.3E-09 62.0 9.6 137 169-319 177-339 (423)
179 PRK06090 DNA polymerase III su 97.6 0.0041 8.8E-08 56.7 16.6 88 249-347 107-197 (319)
180 PRK10733 hflB ATP-dependent me 97.6 0.00061 1.3E-08 68.4 12.0 131 170-322 186-337 (644)
181 PRK08118 topology modulation p 97.6 0.0002 4.3E-09 59.2 6.9 32 171-202 3-37 (167)
182 PF13207 AAA_17: AAA domain; P 97.6 5.1E-05 1.1E-09 59.0 3.3 23 171-193 1-23 (121)
183 COG2607 Predicted ATPase (AAA+ 97.6 0.0011 2.4E-08 56.8 11.2 117 143-288 58-183 (287)
184 TIGR02902 spore_lonB ATP-depen 97.6 0.0006 1.3E-08 66.9 11.2 47 143-192 63-109 (531)
185 PRK12608 transcription termina 97.6 0.0003 6.5E-09 64.9 8.5 100 156-260 122-230 (380)
186 PF02562 PhoH: PhoH-like prote 97.6 0.00076 1.6E-08 57.3 10.1 127 151-288 6-156 (205)
187 cd01120 RecA-like_NTPases RecA 97.6 0.00018 3.8E-09 58.7 6.1 33 172-204 2-34 (165)
188 cd01133 F1-ATPase_beta F1 ATP 97.6 0.0003 6.5E-09 62.3 7.8 91 168-261 68-174 (274)
189 KOG2035 Replication factor C, 97.6 0.0018 3.9E-08 56.7 12.2 185 143-344 11-221 (351)
190 KOG2228 Origin recognition com 97.5 0.0014 3.1E-08 58.8 11.8 173 145-320 24-219 (408)
191 COG1484 DnaC DNA replication p 97.5 0.00037 7.9E-09 61.7 8.0 37 168-204 104-140 (254)
192 PRK06696 uridine kinase; Valid 97.5 0.00016 3.6E-09 62.7 5.7 46 150-195 3-48 (223)
193 COG0464 SpoVK ATPases of the A 97.5 0.00063 1.4E-08 66.4 10.0 132 168-321 275-424 (494)
194 PRK07261 topology modulation p 97.5 0.00057 1.2E-08 56.7 8.2 23 171-193 2-24 (171)
195 TIGR01420 pilT_fam pilus retra 97.5 0.0003 6.4E-09 65.2 7.2 109 169-289 122-231 (343)
196 KOG0731 AAA+-type ATPase conta 97.5 0.0014 3.1E-08 65.3 12.1 179 144-346 310-519 (774)
197 KOG0991 Replication factor C, 97.5 0.00024 5.2E-09 60.4 5.7 50 142-194 24-73 (333)
198 PRK04296 thymidine kinase; Pro 97.5 0.00023 5E-09 60.1 5.6 109 170-288 3-116 (190)
199 PRK05800 cobU adenosylcobinami 97.4 0.00022 4.8E-09 59.0 5.1 150 171-349 3-170 (170)
200 KOG0743 AAA+-type ATPase [Post 97.4 0.0021 4.6E-08 60.0 11.9 123 170-322 236-385 (457)
201 PRK05022 anaerobic nitric oxid 97.4 0.0024 5.3E-08 62.5 13.2 50 143-193 185-234 (509)
202 COG1618 Predicted nucleotide k 97.4 0.00016 3.4E-09 58.0 4.0 32 169-200 5-37 (179)
203 PRK15429 formate hydrogenlyase 97.4 0.0029 6.2E-08 64.4 14.1 49 144-193 375-423 (686)
204 KOG2004 Mitochondrial ATP-depe 97.4 0.00071 1.5E-08 66.2 9.0 54 145-198 411-467 (906)
205 PRK11889 flhF flagellar biosyn 97.4 0.0024 5.2E-08 59.4 11.9 37 168-204 240-276 (436)
206 PF14532 Sigma54_activ_2: Sigm 97.4 0.00028 6.1E-09 56.3 5.3 45 148-193 1-45 (138)
207 TIGR01817 nifA Nif-specific re 97.4 0.0026 5.6E-08 62.8 13.1 51 142-193 193-243 (534)
208 PF03215 Rad17: Rad17 cell cyc 97.4 0.0014 3.1E-08 63.7 11.0 58 145-204 19-78 (519)
209 smart00763 AAA_PrkA PrkA AAA d 97.4 0.0002 4.4E-09 65.7 4.9 50 146-195 52-104 (361)
210 PRK09361 radB DNA repair and r 97.4 0.00067 1.5E-08 58.9 7.9 48 156-204 11-58 (225)
211 PF00448 SRP54: SRP54-type pro 97.4 0.0005 1.1E-08 58.4 6.8 58 169-230 1-58 (196)
212 KOG0733 Nuclear AAA ATPase (VC 97.4 0.00088 1.9E-08 64.5 8.9 131 169-321 545-693 (802)
213 PRK14974 cell division protein 97.4 0.0024 5.2E-08 58.7 11.6 29 168-196 139-167 (336)
214 TIGR01359 UMP_CMP_kin_fam UMP- 97.4 0.0017 3.8E-08 54.3 9.8 23 171-193 1-23 (183)
215 cd00561 CobA_CobO_BtuR ATP:cor 97.4 0.0031 6.6E-08 51.3 10.7 117 170-289 3-139 (159)
216 PRK07667 uridine kinase; Provi 97.4 0.00044 9.6E-09 58.6 6.1 41 154-195 3-43 (193)
217 cd01121 Sms Sms (bacterial rad 97.3 0.0013 2.9E-08 61.3 9.8 97 154-260 68-168 (372)
218 PRK11608 pspF phage shock prot 97.3 0.0025 5.3E-08 58.7 11.4 46 145-191 6-51 (326)
219 cd01124 KaiC KaiC is a circadi 97.3 0.0014 3.1E-08 54.9 9.1 33 172-204 2-34 (187)
220 TIGR01650 PD_CobS cobaltochela 97.3 0.005 1.1E-07 56.0 12.9 47 146-197 46-92 (327)
221 cd00544 CobU Adenosylcobinamid 97.3 0.00058 1.3E-08 56.4 6.3 30 172-204 2-31 (169)
222 PF01583 APS_kinase: Adenylyls 97.3 0.00036 7.8E-09 56.5 4.9 36 169-204 2-37 (156)
223 COG0488 Uup ATPase components 97.3 0.012 2.5E-07 57.5 16.0 133 168-306 347-511 (530)
224 KOG1970 Checkpoint RAD17-RFC c 97.3 0.0095 2.1E-07 57.0 14.6 49 152-203 89-142 (634)
225 cd01393 recA_like RecA is a b 97.3 0.0019 4.2E-08 56.0 9.6 48 156-204 7-60 (226)
226 TIGR02237 recomb_radB DNA repa 97.3 0.0013 2.9E-08 56.3 8.5 37 168-204 11-47 (209)
227 PF10236 DAP3: Mitochondrial r 97.3 0.0047 1E-07 56.3 12.1 48 301-348 258-306 (309)
228 PF13671 AAA_33: AAA domain; P 97.3 0.001 2.3E-08 53.1 7.1 24 171-194 1-24 (143)
229 PRK06067 flagellar accessory p 97.2 0.0019 4.1E-08 56.5 8.9 49 155-204 12-60 (234)
230 KOG0739 AAA+-type ATPase [Post 97.2 0.0075 1.6E-07 53.4 12.0 173 146-344 134-334 (439)
231 PRK05541 adenylylsulfate kinas 97.2 0.00048 1.1E-08 57.4 4.7 37 168-204 6-42 (176)
232 TIGR02974 phageshock_pspF psp 97.2 0.0035 7.5E-08 57.7 10.5 45 147-192 1-45 (329)
233 PF13238 AAA_18: AAA domain; P 97.2 0.0003 6.5E-09 55.0 3.0 22 172-193 1-22 (129)
234 PRK14722 flhF flagellar biosyn 97.2 0.0063 1.4E-07 56.6 12.1 36 169-204 137-174 (374)
235 cd01858 NGP_1 NGP-1. Autoanti 97.2 0.0045 9.8E-08 50.5 10.0 24 169-192 102-125 (157)
236 KOG1514 Origin recognition com 97.2 0.015 3.3E-07 57.1 14.9 171 142-320 393-589 (767)
237 COG4608 AppF ABC-type oligopep 97.2 0.0015 3.2E-08 57.3 7.3 124 168-295 38-177 (268)
238 COG1066 Sms Predicted ATP-depe 97.2 0.0032 6.9E-08 58.2 9.6 97 154-260 79-178 (456)
239 COG0714 MoxR-like ATPases [Gen 97.1 0.0045 9.7E-08 57.1 10.8 49 145-198 24-72 (329)
240 PRK10820 DNA-binding transcrip 97.1 0.0085 1.8E-07 58.8 13.2 49 142-191 201-249 (520)
241 TIGR01425 SRP54_euk signal rec 97.1 0.024 5.1E-07 53.8 15.6 29 168-196 99-127 (429)
242 PRK08533 flagellar accessory p 97.1 0.0021 4.6E-08 56.0 8.1 37 168-204 23-59 (230)
243 PF07724 AAA_2: AAA domain (Cd 97.1 0.0013 2.8E-08 54.5 6.4 36 169-204 3-39 (171)
244 PRK10867 signal recognition pa 97.1 0.018 3.8E-07 54.8 14.8 29 168-196 99-127 (433)
245 KOG0728 26S proteasome regulat 97.1 0.014 3E-07 50.5 12.5 148 147-320 148-331 (404)
246 COG4088 Predicted nucleotide k 97.1 0.0067 1.5E-07 50.9 10.3 27 170-196 2-28 (261)
247 PF00485 PRK: Phosphoribulokin 97.1 0.00043 9.2E-09 58.7 3.5 26 171-196 1-26 (194)
248 TIGR00959 ffh signal recogniti 97.1 0.017 3.7E-07 54.9 14.5 27 168-194 98-124 (428)
249 cd01129 PulE-GspE PulE/GspE Th 97.1 0.0035 7.6E-08 55.8 9.4 106 169-289 80-185 (264)
250 cd03216 ABC_Carb_Monos_I This 97.1 0.0015 3.2E-08 53.8 6.5 118 168-293 25-147 (163)
251 cd03214 ABC_Iron-Siderophores_ 97.1 0.0032 6.8E-08 52.7 8.6 122 168-293 24-163 (180)
252 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.1 0.0027 5.8E-08 51.1 7.8 105 168-293 25-132 (144)
253 cd01123 Rad51_DMC1_radA Rad51_ 97.1 0.002 4.4E-08 56.2 7.6 47 157-204 8-60 (235)
254 KOG0727 26S proteasome regulat 97.1 0.0029 6.3E-08 54.6 8.1 153 146-320 156-339 (408)
255 cd03115 SRP The signal recogni 97.1 0.0042 9.1E-08 51.5 9.1 26 171-196 2-27 (173)
256 PRK11823 DNA repair protein Ra 97.1 0.0039 8.5E-08 59.8 9.9 97 154-260 66-166 (446)
257 cd03228 ABCC_MRP_Like The MRP 97.0 0.0032 7E-08 52.2 8.0 35 168-203 27-61 (171)
258 PRK09354 recA recombinase A; P 97.0 0.003 6.4E-08 58.1 8.1 50 155-204 46-95 (349)
259 cd03238 ABC_UvrA The excision 97.0 0.0036 7.7E-08 52.2 7.9 23 168-190 20-42 (176)
260 PRK15455 PrkA family serine pr 97.0 0.00074 1.6E-08 65.4 4.2 52 145-196 76-130 (644)
261 PRK05480 uridine/cytidine kina 97.0 0.00076 1.7E-08 57.9 3.8 27 167-193 4-30 (209)
262 COG2884 FtsE Predicted ATPase 97.0 0.0033 7.2E-08 52.1 7.2 53 241-295 146-204 (223)
263 PF00910 RNA_helicase: RNA hel 97.0 0.00044 9.5E-09 52.6 2.1 25 172-196 1-25 (107)
264 KOG0652 26S proteasome regulat 97.0 0.027 5.9E-07 49.0 12.9 27 168-194 204-230 (424)
265 cd03247 ABCC_cytochrome_bd The 96.9 0.0054 1.2E-07 51.1 8.7 26 168-193 27-52 (178)
266 TIGR00416 sms DNA repair prote 96.9 0.0059 1.3E-07 58.7 10.0 51 153-204 79-129 (454)
267 PRK12723 flagellar biosynthesi 96.9 0.0056 1.2E-07 57.4 9.5 27 168-194 173-199 (388)
268 PTZ00301 uridine kinase; Provi 96.9 0.00081 1.7E-08 57.7 3.6 27 169-195 3-29 (210)
269 PRK08233 hypothetical protein; 96.9 0.00075 1.6E-08 56.4 3.3 26 169-194 3-28 (182)
270 PRK06762 hypothetical protein; 96.9 0.0008 1.7E-08 55.4 3.5 25 169-193 2-26 (166)
271 KOG0734 AAA+-type ATPase conta 96.9 0.0038 8.3E-08 59.4 8.2 153 146-320 305-484 (752)
272 cd03223 ABCD_peroxisomal_ALDP 96.9 0.0037 8E-08 51.5 7.4 119 168-292 26-152 (166)
273 TIGR03574 selen_PSTK L-seryl-t 96.9 0.0056 1.2E-07 54.1 9.0 26 171-196 1-26 (249)
274 cd02019 NK Nucleoside/nucleoti 96.9 0.00076 1.6E-08 46.8 2.8 23 171-193 1-23 (69)
275 PF13604 AAA_30: AAA domain; P 96.9 0.005 1.1E-07 52.3 8.4 104 169-289 18-132 (196)
276 TIGR02858 spore_III_AA stage I 96.9 0.0044 9.4E-08 55.3 8.2 118 168-292 110-233 (270)
277 PTZ00088 adenylate kinase 1; P 96.9 0.0016 3.4E-08 56.7 5.3 23 171-193 8-30 (229)
278 PRK10923 glnG nitrogen regulat 96.9 0.011 2.4E-07 57.3 11.8 48 144-192 137-184 (469)
279 TIGR00064 ftsY signal recognit 96.9 0.007 1.5E-07 54.1 9.3 36 168-203 71-106 (272)
280 PRK14528 adenylate kinase; Pro 96.9 0.023 5E-07 47.8 11.9 24 170-193 2-25 (186)
281 cd00267 ABC_ATPase ABC (ATP-bi 96.9 0.0026 5.6E-08 51.9 6.0 117 169-294 25-146 (157)
282 KOG0729 26S proteasome regulat 96.9 0.008 1.7E-07 52.4 9.0 52 148-204 180-241 (435)
283 COG0572 Udk Uridine kinase [Nu 96.8 0.0014 3.1E-08 55.7 4.4 30 167-196 6-35 (218)
284 PF07726 AAA_3: ATPase family 96.8 0.00079 1.7E-08 52.3 2.5 28 172-199 2-29 (131)
285 PF08433 KTI12: Chromatin asso 96.8 0.0024 5.1E-08 57.0 5.9 27 170-196 2-28 (270)
286 KOG0736 Peroxisome assembly fa 96.8 0.011 2.5E-07 58.6 10.9 123 169-313 705-849 (953)
287 KOG1969 DNA replication checkp 96.8 0.0044 9.6E-08 61.0 8.0 27 167-193 324-350 (877)
288 PRK03839 putative kinase; Prov 96.8 0.00099 2.1E-08 55.7 3.2 24 171-194 2-25 (180)
289 TIGR00235 udk uridine kinase. 96.8 0.0013 2.9E-08 56.3 3.9 28 167-194 4-31 (207)
290 PF00437 T2SE: Type II/IV secr 96.8 0.0012 2.6E-08 59.1 3.8 118 154-289 113-233 (270)
291 PRK04040 adenylate kinase; Pro 96.8 0.0014 3E-08 55.3 3.9 25 170-194 3-27 (188)
292 COG0563 Adk Adenylate kinase a 96.8 0.0026 5.7E-08 53.0 5.5 94 171-273 2-101 (178)
293 PRK00131 aroK shikimate kinase 96.8 0.0012 2.5E-08 54.7 3.4 26 169-194 4-29 (175)
294 cd01394 radB RadB. The archaea 96.8 0.0028 6.1E-08 54.7 5.9 49 155-204 6-54 (218)
295 PF03969 AFG1_ATPase: AFG1-lik 96.8 0.0041 9E-08 57.8 7.2 102 167-286 60-166 (362)
296 cd03222 ABC_RNaseL_inhibitor T 96.8 0.0099 2.2E-07 49.5 8.8 107 168-293 24-137 (177)
297 PRK06547 hypothetical protein; 96.8 0.0018 4E-08 53.6 4.4 27 167-193 13-39 (172)
298 PF00406 ADK: Adenylate kinase 96.8 0.0009 2E-08 54.2 2.5 20 174-193 1-20 (151)
299 TIGR03499 FlhF flagellar biosy 96.8 0.0062 1.4E-07 54.8 8.1 28 168-195 193-220 (282)
300 TIGR01360 aden_kin_iso1 adenyl 96.8 0.0012 2.7E-08 55.3 3.4 26 168-193 2-27 (188)
301 KOG0738 AAA+-type ATPase [Post 96.7 0.011 2.3E-07 54.4 9.3 50 145-194 212-270 (491)
302 cd03230 ABC_DR_subfamily_A Thi 96.7 0.0085 1.8E-07 49.7 8.2 26 168-193 25-50 (173)
303 KOG0736 Peroxisome assembly fa 96.7 0.01 2.3E-07 58.9 9.8 172 146-345 402-598 (953)
304 PRK12726 flagellar biosynthesi 96.7 0.015 3.3E-07 53.9 10.4 37 168-204 205-241 (407)
305 PRK09270 nucleoside triphospha 96.7 0.0021 4.6E-08 56.0 4.7 31 166-196 30-60 (229)
306 cd01125 repA Hexameric Replica 96.7 0.01 2.3E-07 52.0 9.1 24 171-194 3-26 (239)
307 cd03246 ABCC_Protease_Secretio 96.7 0.0054 1.2E-07 50.9 6.8 26 168-193 27-52 (173)
308 PRK00279 adk adenylate kinase; 96.7 0.0079 1.7E-07 51.8 8.1 23 171-193 2-24 (215)
309 cd00227 CPT Chloramphenicol (C 96.7 0.0015 3.3E-08 54.4 3.4 25 170-194 3-27 (175)
310 cd03281 ABC_MSH5_euk MutS5 hom 96.7 0.013 2.9E-07 50.4 9.4 23 169-191 29-51 (213)
311 PRK14529 adenylate kinase; Pro 96.7 0.0065 1.4E-07 52.5 7.4 92 172-270 3-97 (223)
312 cd01122 GP4d_helicase GP4d_hel 96.7 0.017 3.6E-07 51.6 10.4 37 168-204 29-66 (271)
313 PRK00625 shikimate kinase; Pro 96.7 0.0014 3E-08 54.4 3.1 24 171-194 2-25 (173)
314 COG0529 CysC Adenylylsulfate k 96.7 0.0026 5.7E-08 51.9 4.5 36 168-203 22-57 (197)
315 TIGR02012 tigrfam_recA protein 96.7 0.0049 1.1E-07 56.1 6.9 50 155-204 41-90 (321)
316 PRK15115 response regulator Gl 96.7 0.045 9.7E-07 52.7 13.9 47 145-192 134-180 (444)
317 cd00983 recA RecA is a bacter 96.7 0.0052 1.1E-07 56.0 6.9 50 155-204 41-90 (325)
318 PRK11388 DNA-binding transcrip 96.7 0.017 3.6E-07 58.4 11.3 49 143-192 323-371 (638)
319 cd03237 ABC_RNaseL_inhibitor_d 96.7 0.016 3.4E-07 51.1 9.8 25 169-193 25-49 (246)
320 cd03283 ABC_MutS-like MutS-lik 96.6 0.019 4.1E-07 48.9 9.9 23 170-192 26-48 (199)
321 cd02028 UMPK_like Uridine mono 96.6 0.0023 5E-08 53.5 4.1 24 171-194 1-24 (179)
322 PF03266 NTPase_1: NTPase; In 96.6 0.0016 3.4E-08 53.8 2.9 24 172-195 2-25 (168)
323 CHL00206 ycf2 Ycf2; Provisiona 96.6 0.012 2.7E-07 64.1 10.1 26 168-193 1629-1654(2281)
324 PRK00889 adenylylsulfate kinas 96.6 0.0032 6.8E-08 52.4 4.8 27 169-195 4-30 (175)
325 cd01428 ADK Adenylate kinase ( 96.6 0.0076 1.6E-07 50.8 7.1 22 172-193 2-23 (194)
326 KOG1051 Chaperone HSP104 and r 96.6 0.018 3.8E-07 59.0 10.6 105 145-262 562-672 (898)
327 cd02027 APSK Adenosine 5'-phos 96.6 0.015 3.3E-07 47.0 8.5 24 171-194 1-24 (149)
328 TIGR01351 adk adenylate kinase 96.6 0.0034 7.4E-08 53.9 4.9 22 172-193 2-23 (210)
329 PRK05703 flhF flagellar biosyn 96.6 0.019 4.1E-07 54.7 10.2 36 169-204 221-258 (424)
330 COG1102 Cmk Cytidylate kinase 96.6 0.0019 4.1E-08 52.0 2.9 24 171-194 2-25 (179)
331 PF03205 MobB: Molybdopterin g 96.6 0.0036 7.8E-08 50.0 4.6 35 170-204 1-36 (140)
332 PF12775 AAA_7: P-loop contain 96.6 0.0021 4.5E-08 57.5 3.5 25 170-194 34-58 (272)
333 PRK05439 pantothenate kinase; 96.6 0.0031 6.7E-08 57.2 4.6 39 157-195 74-112 (311)
334 PF03308 ArgK: ArgK protein; 96.5 0.0056 1.2E-07 53.4 6.0 40 156-196 17-56 (266)
335 TIGR00764 lon_rel lon-related 96.5 0.0038 8.3E-08 62.2 5.6 58 144-206 17-75 (608)
336 PRK03846 adenylylsulfate kinas 96.5 0.004 8.6E-08 53.0 5.1 38 167-204 22-59 (198)
337 PRK13765 ATP-dependent proteas 96.5 0.0032 6.9E-08 62.7 5.0 75 142-227 28-103 (637)
338 PRK13947 shikimate kinase; Pro 96.5 0.0019 4.2E-08 53.3 3.1 24 171-194 3-26 (171)
339 TIGR02915 PEP_resp_reg putativ 96.5 0.031 6.6E-07 53.8 11.6 47 145-192 139-185 (445)
340 cd03240 ABC_Rad50 The catalyti 96.5 0.018 4E-07 49.2 9.0 21 170-190 23-43 (204)
341 PRK14721 flhF flagellar biosyn 96.5 0.045 9.8E-07 51.8 12.3 26 168-193 190-215 (420)
342 cd03232 ABC_PDR_domain2 The pl 96.5 0.016 3.5E-07 48.9 8.6 25 168-192 32-56 (192)
343 TIGR02788 VirB11 P-type DNA tr 96.5 0.0068 1.5E-07 55.3 6.6 112 168-290 143-255 (308)
344 PF00625 Guanylate_kin: Guanyl 96.5 0.0032 7E-08 52.8 4.2 36 169-204 2-37 (183)
345 TIGR00150 HI0065_YjeE ATPase, 96.5 0.0036 7.8E-08 49.3 4.1 25 169-193 22-46 (133)
346 cd01130 VirB11-like_ATPase Typ 96.5 0.0055 1.2E-07 51.6 5.6 91 169-268 25-118 (186)
347 cd02023 UMPK Uridine monophosp 96.5 0.0019 4E-08 55.0 2.7 23 171-193 1-23 (198)
348 COG0467 RAD55 RecA-superfamily 96.5 0.0088 1.9E-07 53.2 7.2 38 167-204 21-58 (260)
349 COG0468 RecA RecA/RadA recombi 96.5 0.0068 1.5E-07 54.0 6.2 96 157-259 49-150 (279)
350 cd02024 NRK1 Nicotinamide ribo 96.5 0.0019 4.2E-08 54.2 2.6 23 171-193 1-23 (187)
351 COG3854 SpoIIIAA ncharacterize 96.5 0.019 4.2E-07 49.1 8.4 115 168-290 136-255 (308)
352 PRK08972 fliI flagellum-specif 96.5 0.0079 1.7E-07 56.9 6.8 87 168-260 161-262 (444)
353 PRK06217 hypothetical protein; 96.4 0.0023 4.9E-08 53.7 2.9 24 171-194 3-26 (183)
354 cd02025 PanK Pantothenate kina 96.4 0.0021 4.5E-08 55.6 2.7 24 171-194 1-24 (220)
355 TIGR02322 phosphon_PhnN phosph 96.4 0.0026 5.6E-08 53.1 3.2 25 170-194 2-26 (179)
356 PRK10416 signal recognition pa 96.4 0.019 4.1E-07 52.5 9.0 29 168-196 113-141 (318)
357 PRK15453 phosphoribulokinase; 96.4 0.0049 1.1E-07 54.7 4.9 29 167-195 3-31 (290)
358 TIGR02655 circ_KaiC circadian 96.4 0.0052 1.1E-07 59.8 5.6 50 154-204 249-298 (484)
359 TIGR02524 dot_icm_DotB Dot/Icm 96.4 0.0054 1.2E-07 57.0 5.5 95 169-269 134-231 (358)
360 cd02020 CMPK Cytidine monophos 96.4 0.0025 5.3E-08 51.1 2.8 23 171-193 1-23 (147)
361 PRK14738 gmk guanylate kinase; 96.4 0.0024 5.1E-08 54.7 2.9 27 166-192 10-36 (206)
362 cd02021 GntK Gluconate kinase 96.4 0.0022 4.8E-08 51.8 2.6 23 171-193 1-23 (150)
363 cd00071 GMPK Guanosine monopho 96.4 0.0023 5E-08 51.0 2.6 25 172-196 2-26 (137)
364 KOG0742 AAA+-type ATPase [Post 96.4 0.016 3.5E-07 53.6 8.2 25 169-193 384-408 (630)
365 PF06309 Torsin: Torsin; Inte 96.4 0.0058 1.3E-07 47.4 4.6 41 153-193 37-77 (127)
366 cd01857 HSR1_MMR1 HSR1/MMR1. 96.4 0.042 9.1E-07 43.8 10.0 51 14-66 3-53 (141)
367 TIGR03877 thermo_KaiC_1 KaiC d 96.4 0.013 2.8E-07 51.4 7.5 49 155-204 8-56 (237)
368 PRK14526 adenylate kinase; Pro 96.4 0.0062 1.4E-07 52.3 5.3 22 172-193 3-24 (211)
369 TIGR03878 thermo_KaiC_2 KaiC d 96.4 0.0058 1.2E-07 54.3 5.3 37 168-204 35-71 (259)
370 KOG0651 26S proteasome regulat 96.4 0.0069 1.5E-07 53.9 5.6 30 168-197 165-194 (388)
371 PRK12727 flagellar biosynthesi 96.4 0.012 2.6E-07 56.9 7.7 29 168-196 349-377 (559)
372 KOG0735 AAA+-type ATPase [Post 96.4 0.045 9.7E-07 54.2 11.4 129 170-320 702-848 (952)
373 COG3640 CooC CO dehydrogenase 96.4 0.013 2.8E-07 50.2 7.0 38 171-208 2-39 (255)
374 PF07693 KAP_NTPase: KAP famil 96.4 0.013 2.9E-07 53.7 7.9 76 152-227 3-80 (325)
375 PF00158 Sigma54_activat: Sigm 96.3 0.0042 9.2E-08 51.3 3.9 45 147-192 1-45 (168)
376 COG1703 ArgK Putative periplas 96.3 0.009 1.9E-07 53.0 6.1 41 156-197 39-79 (323)
377 KOG0726 26S proteasome regulat 96.3 0.034 7.5E-07 49.2 9.6 52 145-196 185-246 (440)
378 PRK10751 molybdopterin-guanine 96.3 0.0057 1.2E-07 50.5 4.6 29 168-196 5-33 (173)
379 COG2274 SunT ABC-type bacterio 96.3 0.01 2.3E-07 59.9 7.4 24 168-191 498-521 (709)
380 TIGR02768 TraA_Ti Ti-type conj 96.3 0.02 4.4E-07 58.5 9.5 27 170-196 369-395 (744)
381 PRK09280 F0F1 ATP synthase sub 96.3 0.016 3.5E-07 55.3 8.1 90 168-260 143-248 (463)
382 COG1121 ZnuC ABC-type Mn/Zn tr 96.3 0.042 9.2E-07 48.1 10.1 51 241-293 148-204 (254)
383 KOG0730 AAA+-type ATPase [Post 96.3 0.01 2.2E-07 57.9 6.8 131 168-320 217-364 (693)
384 TIGR02782 TrbB_P P-type conjug 96.3 0.011 2.3E-07 53.7 6.7 88 170-268 133-222 (299)
385 cd00464 SK Shikimate kinase (S 96.3 0.0034 7.4E-08 50.8 3.1 22 172-193 2-23 (154)
386 COG0465 HflB ATP-dependent Zn 96.3 0.047 1E-06 53.6 11.3 155 144-320 149-333 (596)
387 COG1936 Predicted nucleotide k 96.3 0.0028 6.1E-08 51.6 2.5 20 171-190 2-21 (180)
388 COG0194 Gmk Guanylate kinase [ 96.3 0.0044 9.5E-08 51.2 3.6 25 169-193 4-28 (191)
389 cd03217 ABC_FeS_Assembly ABC-t 96.3 0.018 3.8E-07 49.1 7.6 25 168-192 25-49 (200)
390 COG1428 Deoxynucleoside kinase 96.3 0.0034 7.4E-08 52.9 3.0 26 169-194 4-29 (216)
391 TIGR00554 panK_bact pantothena 96.3 0.0055 1.2E-07 55.1 4.6 28 167-194 60-87 (290)
392 TIGR00390 hslU ATP-dependent p 96.3 0.0046 1E-07 57.9 4.1 53 145-197 12-75 (441)
393 PF00006 ATP-synt_ab: ATP synt 96.3 0.0048 1E-07 53.0 3.9 86 169-260 15-115 (215)
394 COG1124 DppF ABC-type dipeptid 96.3 0.0044 9.5E-08 53.3 3.6 24 168-191 32-55 (252)
395 PLN02674 adenylate kinase 96.3 0.025 5.3E-07 49.6 8.3 24 170-193 32-55 (244)
396 cd03233 ABC_PDR_domain1 The pl 96.2 0.041 9E-07 46.9 9.7 27 168-194 32-58 (202)
397 PRK13949 shikimate kinase; Pro 96.2 0.0039 8.5E-08 51.6 3.2 24 171-194 3-26 (169)
398 PRK14530 adenylate kinase; Pro 96.2 0.0037 8.1E-08 53.9 3.2 24 170-193 4-27 (215)
399 TIGR02525 plasmid_TraJ plasmid 96.2 0.0087 1.9E-07 55.8 5.8 108 170-287 150-259 (372)
400 COG0488 Uup ATPase components 96.2 0.016 3.4E-07 56.6 7.7 26 169-194 29-54 (530)
401 PRK12597 F0F1 ATP synthase sub 96.2 0.019 4.2E-07 54.9 8.1 89 168-260 142-247 (461)
402 TIGR01313 therm_gnt_kin carboh 96.2 0.003 6.5E-08 51.8 2.4 22 172-193 1-22 (163)
403 PRK14723 flhF flagellar biosyn 96.2 0.042 9.1E-07 55.7 10.7 25 169-193 185-209 (767)
404 PRK12339 2-phosphoglycerate ki 96.2 0.0047 1E-07 52.4 3.4 25 169-193 3-27 (197)
405 cd03213 ABCG_EPDR ABCG transpo 96.2 0.032 7E-07 47.2 8.6 26 168-193 34-59 (194)
406 COG1875 NYN ribonuclease and A 96.2 0.039 8.4E-07 50.4 9.2 24 167-190 243-266 (436)
407 PRK00300 gmk guanylate kinase; 96.2 0.0043 9.3E-08 53.0 3.2 25 169-193 5-29 (205)
408 PRK13948 shikimate kinase; Pro 96.2 0.0048 1E-07 51.6 3.3 27 168-194 9-35 (182)
409 TIGR03263 guanyl_kin guanylate 96.2 0.0038 8.2E-08 52.1 2.8 24 170-193 2-25 (180)
410 PF08937 DUF1863: MTH538 TIR-l 96.2 0.009 2E-07 47.1 4.8 50 8-61 56-105 (130)
411 PF13086 AAA_11: AAA domain; P 96.2 0.0096 2.1E-07 51.5 5.4 35 154-193 7-41 (236)
412 TIGR01818 ntrC nitrogen regula 96.2 0.049 1.1E-06 52.7 10.8 48 145-193 134-181 (463)
413 PF06745 KaiC: KaiC; InterPro 96.1 0.0092 2E-07 51.8 5.2 49 155-204 6-55 (226)
414 PRK05201 hslU ATP-dependent pr 96.1 0.0068 1.5E-07 56.9 4.5 52 145-196 15-77 (443)
415 PRK14737 gmk guanylate kinase; 96.1 0.0051 1.1E-07 51.8 3.4 26 168-193 3-28 (186)
416 PRK10463 hydrogenase nickel in 96.1 0.01 2.2E-07 53.2 5.3 32 167-198 102-133 (290)
417 PRK13946 shikimate kinase; Pro 96.1 0.0047 1E-07 51.9 3.1 26 169-194 10-35 (184)
418 KOG0740 AAA+-type ATPase [Post 96.1 0.043 9.4E-07 51.6 9.7 29 167-195 184-212 (428)
419 PRK08927 fliI flagellum-specif 96.1 0.023 4.9E-07 54.0 7.9 87 168-260 157-258 (442)
420 PF08298 AAA_PrkA: PrkA AAA do 96.1 0.013 2.9E-07 53.5 6.0 53 144-196 60-115 (358)
421 PRK12724 flagellar biosynthesi 96.1 0.037 8.1E-07 52.1 9.2 25 169-193 223-247 (432)
422 smart00534 MUTSac ATPase domai 96.1 0.011 2.5E-07 49.6 5.4 21 171-191 1-21 (185)
423 PRK13808 adenylate kinase; Pro 96.1 0.0082 1.8E-07 54.9 4.7 22 172-193 3-24 (333)
424 TIGR01039 atpD ATP synthase, F 96.1 0.03 6.6E-07 53.3 8.6 90 168-260 142-247 (461)
425 PRK07132 DNA polymerase III su 96.1 0.27 6E-06 44.5 14.5 130 169-319 18-161 (299)
426 PRK14527 adenylate kinase; Pro 96.1 0.0058 1.3E-07 51.6 3.5 26 168-193 5-30 (191)
427 PRK13975 thymidylate kinase; P 96.1 0.0056 1.2E-07 51.8 3.4 26 170-195 3-28 (196)
428 TIGR03881 KaiC_arch_4 KaiC dom 96.1 0.013 2.8E-07 51.0 5.7 48 156-204 8-55 (229)
429 PLN02459 probable adenylate ki 96.1 0.0089 1.9E-07 52.7 4.6 91 171-270 31-129 (261)
430 PRK14493 putative bifunctional 96.1 0.0079 1.7E-07 53.7 4.4 34 170-204 2-35 (274)
431 cd03282 ABC_MSH4_euk MutS4 hom 96.1 0.044 9.5E-07 46.8 8.8 24 168-191 28-51 (204)
432 cd01135 V_A-ATPase_B V/A-type 96.1 0.034 7.4E-07 49.4 8.3 90 168-261 68-177 (276)
433 COG0003 ArsA Predicted ATPase 96.0 0.013 2.8E-07 53.5 5.8 35 169-203 2-36 (322)
434 PF06414 Zeta_toxin: Zeta toxi 96.0 0.009 2E-07 50.8 4.6 110 166-282 12-125 (199)
435 PRK13657 cyclic beta-1,2-gluca 96.0 0.016 3.5E-07 57.9 6.9 25 168-192 360-384 (588)
436 PHA02244 ATPase-like protein 96.0 0.0069 1.5E-07 55.9 3.9 50 144-194 95-144 (383)
437 PRK10078 ribose 1,5-bisphospho 96.0 0.0046 1E-07 52.0 2.6 24 170-193 3-26 (186)
438 PRK04182 cytidylate kinase; Pr 96.0 0.0059 1.3E-07 50.8 3.2 23 171-193 2-24 (180)
439 cd03243 ABC_MutS_homologs The 96.0 0.004 8.7E-08 53.1 2.2 22 170-191 30-51 (202)
440 TIGR00708 cobA cob(I)alamin ad 96.0 0.12 2.6E-06 42.7 10.7 116 169-288 5-140 (173)
441 TIGR02533 type_II_gspE general 96.0 0.028 6E-07 54.6 8.1 105 169-288 242-346 (486)
442 COG0396 sufC Cysteine desulfur 96.0 0.08 1.7E-06 45.4 9.8 53 243-295 155-211 (251)
443 PRK06002 fliI flagellum-specif 96.0 0.022 4.8E-07 54.1 7.2 26 168-193 164-189 (450)
444 PLN02200 adenylate kinase fami 96.0 0.0067 1.5E-07 53.0 3.5 26 168-193 42-67 (234)
445 PRK12678 transcription termina 96.0 0.014 3E-07 56.7 5.8 90 168-260 415-513 (672)
446 KOG3347 Predicted nucleotide k 96.0 0.0061 1.3E-07 48.4 2.8 25 169-193 7-31 (176)
447 PRK05057 aroK shikimate kinase 95.9 0.0068 1.5E-07 50.3 3.3 25 170-194 5-29 (172)
448 TIGR02868 CydC thiol reductant 95.9 0.032 7E-07 55.0 8.7 25 168-192 360-384 (529)
449 TIGR00176 mobB molybdopterin-g 95.9 0.0088 1.9E-07 48.7 3.9 26 171-196 1-26 (155)
450 PRK05917 DNA polymerase III su 95.9 0.18 3.8E-06 45.4 12.4 57 249-307 94-154 (290)
451 COG1763 MobB Molybdopterin-gua 95.9 0.0097 2.1E-07 48.5 4.1 36 169-204 2-37 (161)
452 PRK13764 ATPase; Provisional 95.9 0.026 5.6E-07 55.8 7.7 85 170-268 258-342 (602)
453 PF08477 Miro: Miro-like prote 95.9 0.0065 1.4E-07 46.7 2.9 21 172-192 2-22 (119)
454 PRK10875 recD exonuclease V su 95.9 0.045 9.7E-07 54.6 9.4 27 169-195 167-193 (615)
455 TIGR02173 cyt_kin_arch cytidyl 95.9 0.0066 1.4E-07 50.0 3.1 23 171-193 2-24 (171)
456 PF13521 AAA_28: AAA domain; P 95.9 0.0057 1.2E-07 50.2 2.7 21 172-192 2-22 (163)
457 PF13245 AAA_19: Part of AAA d 95.9 0.0082 1.8E-07 42.4 3.1 24 169-192 10-33 (76)
458 PRK03731 aroL shikimate kinase 95.9 0.0069 1.5E-07 50.1 3.1 24 170-193 3-26 (171)
459 smart00072 GuKc Guanylate kina 95.9 0.0072 1.6E-07 50.7 3.3 28 170-197 3-30 (184)
460 PRK11174 cysteine/glutathione 95.9 0.019 4.1E-07 57.4 6.8 26 168-193 375-400 (588)
461 cd03285 ABC_MSH2_euk MutS2 hom 95.9 0.0049 1.1E-07 53.4 2.3 24 168-191 29-52 (222)
462 cd03287 ABC_MSH3_euk MutS3 hom 95.9 0.091 2E-06 45.5 10.1 24 168-191 30-53 (222)
463 PRK05973 replicative DNA helic 95.9 0.022 4.7E-07 49.7 6.2 36 169-204 64-99 (237)
464 PRK08149 ATP synthase SpaL; Va 95.9 0.03 6.5E-07 53.1 7.6 87 168-260 150-251 (428)
465 COG0378 HypB Ni2+-binding GTPa 95.9 0.01 2.2E-07 49.4 3.9 36 169-204 13-48 (202)
466 cd00820 PEPCK_HprK Phosphoenol 95.9 0.0074 1.6E-07 45.6 2.9 22 169-190 15-36 (107)
467 PRK14531 adenylate kinase; Pro 95.9 0.0076 1.6E-07 50.5 3.3 24 170-193 3-26 (183)
468 PHA02774 E1; Provisional 95.9 0.03 6.5E-07 54.6 7.6 39 154-194 421-459 (613)
469 PRK09435 membrane ATPase/prote 95.8 0.019 4.1E-07 52.7 6.0 30 167-196 54-83 (332)
470 PF05970 PIF1: PIF1-like helic 95.8 0.026 5.6E-07 52.8 7.1 33 168-200 21-53 (364)
471 PRK05537 bifunctional sulfate 95.8 0.011 2.4E-07 58.4 4.8 48 147-195 371-418 (568)
472 PRK04328 hypothetical protein; 95.8 0.029 6.2E-07 49.6 7.0 48 156-204 11-58 (249)
473 PRK06761 hypothetical protein; 95.8 0.011 2.5E-07 52.8 4.4 27 170-196 4-30 (282)
474 COG2401 ABC-type ATPase fused 95.8 0.024 5.3E-07 52.6 6.5 127 168-295 408-575 (593)
475 PRK14532 adenylate kinase; Pro 95.8 0.0068 1.5E-07 51.0 2.9 22 172-193 3-24 (188)
476 PRK05922 type III secretion sy 95.8 0.04 8.6E-07 52.3 8.2 26 168-193 156-181 (434)
477 PRK05986 cob(I)alamin adenolsy 95.8 0.026 5.7E-07 47.3 6.2 118 168-288 21-158 (191)
478 cd03116 MobB Molybdenum is an 95.8 0.014 3E-07 47.7 4.5 27 170-196 2-28 (159)
479 cd01672 TMPK Thymidine monopho 95.8 0.025 5.5E-07 47.6 6.4 25 171-195 2-26 (200)
480 TIGR00073 hypB hydrogenase acc 95.8 0.014 3.1E-07 49.9 4.8 29 167-195 20-48 (207)
481 PRK13768 GTPase; Provisional 95.8 0.013 2.9E-07 51.8 4.8 27 170-196 3-29 (253)
482 COG3910 Predicted ATPase [Gene 95.8 0.055 1.2E-06 44.9 7.8 56 237-293 134-193 (233)
483 KOG2170 ATPase of the AAA+ sup 95.8 0.044 9.6E-07 48.7 7.7 42 152-193 93-134 (344)
484 COG0703 AroK Shikimate kinase 95.8 0.0081 1.8E-07 49.3 3.0 28 170-197 3-30 (172)
485 PRK06995 flhF flagellar biosyn 95.8 0.049 1.1E-06 52.5 8.7 26 169-194 256-281 (484)
486 cd02029 PRK_like Phosphoribulo 95.8 0.011 2.4E-07 52.1 4.1 26 171-196 1-26 (277)
487 cd01132 F1_ATPase_alpha F1 ATP 95.8 0.044 9.6E-07 48.6 7.8 90 168-262 68-173 (274)
488 PF02374 ArsA_ATPase: Anion-tr 95.8 0.015 3.2E-07 53.0 5.0 25 170-194 2-26 (305)
489 PLN02348 phosphoribulokinase 95.8 0.01 2.2E-07 55.2 3.9 29 167-195 47-75 (395)
490 COG2842 Uncharacterized ATPase 95.8 0.12 2.7E-06 45.9 10.5 119 142-272 69-189 (297)
491 PRK04301 radA DNA repair and r 95.7 0.033 7.1E-07 51.1 7.2 49 155-204 89-143 (317)
492 COG0055 AtpD F0F1-type ATP syn 95.7 0.038 8.1E-07 50.6 7.2 103 168-273 146-268 (468)
493 PRK09825 idnK D-gluconate kina 95.7 0.0088 1.9E-07 49.8 3.1 25 170-194 4-28 (176)
494 PHA02530 pseT polynucleotide k 95.7 0.0086 1.9E-07 54.4 3.3 24 170-193 3-26 (300)
495 KOG1532 GTPase XAB1, interacts 95.7 0.013 2.7E-07 51.4 4.0 39 168-207 18-56 (366)
496 PLN02318 phosphoribulokinase/u 95.7 0.012 2.7E-07 57.4 4.4 28 166-193 62-89 (656)
497 PF09848 DUF2075: Uncharacteri 95.7 0.039 8.6E-07 51.4 7.7 35 170-204 2-38 (352)
498 PRK05342 clpX ATP-dependent pr 95.7 0.012 2.6E-07 55.8 4.1 25 170-194 109-133 (412)
499 PF08423 Rad51: Rad51; InterP 95.7 0.033 7.2E-07 49.3 6.8 65 155-226 25-95 (256)
500 COG2805 PilT Tfp pilus assembl 95.7 0.055 1.2E-06 48.2 7.9 129 168-312 124-253 (353)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.1e-68 Score=559.09 Aligned_cols=338 Identities=36% Similarity=0.598 Sum_probs=296.0
Q ss_pred cccccCCccccHHHHHHHhhCceEEEEecCCCCCchhhHHHHHHHHHhhhhCCCeEEEEeeecCCcccccccCchHHHHH
Q 037291 3 DEKLRRGDEISDALLNAIQGSKISVVIFSKDYGSSKWCLNELVKILECKHTNRQIIIPVFYGVSPSDVRHQTGIFKHGFD 82 (349)
Q Consensus 3 ~~~~~~g~~~~~~i~~ai~~s~~~ivv~S~~y~~S~~cl~El~~i~~~~~~~~~~vlPvfy~v~p~~vr~~~g~~~~~~~ 82 (349)
|+++++|+.|++++++||++|+++|||||++||+|+|||+||++|++|+++++++|+||||+|+|+|||+|+|.|+++|+
T Consensus 46 d~~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~s~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~ 125 (1153)
T PLN03210 46 DNEIERSQSLDPELKQAIRDSRIAVVVFSKNYASSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFE 125 (1153)
T ss_pred cCCccCCCcccHHHHHHHHhCeEEEEEecCCcccchHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHH
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhhcccChHHHHHHHHHHHHhhcccCCCCcccchhHHHHHHHHHhhhhcccccccccCCCCCcccccchhhhHHHhhh
Q 037291 83 QLKQHFEEKPEMVQRWRDALRETSGLAGHESTKFRHDAELVNKIVEDVLKNLEKITVATDSSNGLVGLNSRIEQIKPFLC 162 (349)
Q Consensus 83 ~~~~~~~~~~~~v~~wr~al~~~~~~~g~~~~~~~~e~~~i~~iv~~v~~~l~~~~~~~~~~~~~vGr~~~~~~l~~~L~ 162 (349)
++..+. ..+++++||+||+++++++||++..+.+|+++|++||++|+.++...++ ...+++|||+.+++++..+|.
T Consensus 126 ~~~~~~--~~~~~~~w~~al~~~~~~~g~~~~~~~~E~~~i~~Iv~~v~~~l~~~~~--~~~~~~vG~~~~l~~l~~lL~ 201 (1153)
T PLN03210 126 KTCQNK--TEDEKIQWKQALTDVANILGYHSQNWPNEAKMIEEIANDVLGKLNLTPS--NDFEDFVGIEDHIAKMSSLLH 201 (1153)
T ss_pred HHhccc--chhHHHHHHHHHHHHhCcCceecCCCCCHHHHHHHHHHHHHHhhccccC--cccccccchHHHHHHHHHHHc
Confidence 987654 3457999999999999999999988888999999999999999987766 778899999999999999998
Q ss_pred hcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEec--cccc---c-----CCCChHHHHHHHHHHhhcccc
Q 037291 163 MDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDV--RRNS---E-----TGGGLEHLQKEMLSTILSEKL 232 (349)
Q Consensus 163 ~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~--~~~~---~-----~~~~~~~l~~~ll~~~~~~~~ 232 (349)
.+ .+++++|+||||||+||||||+.+|+++...|+..+|+.+. .... . .......++.+++..+.....
T Consensus 202 l~-~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~ 280 (1153)
T PLN03210 202 LE-SEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKD 280 (1153)
T ss_pred cc-cCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCC
Confidence 76 67899999999999999999999999999999999998642 1110 0 001123456666666544321
Q ss_pred cccCCCchHHHHHHhCCCeEEEEEeCCCChhHHHHHhcccCCCCCCcEEEEEeCChhHHHhcCCCCCcEEEcCCCCHHHH
Q 037291 233 EVAGANIPHFTKERVWRMKVLIVLDDVNEVGQLEGLIGELDQFGPGSRIVVTTRDKGVLEKFRGEEKKIHRVNGLEFEEA 312 (349)
Q Consensus 233 ~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IIiTtR~~~~~~~~~~~~~~~~~l~~L~~~ea 312 (349)
.. ... ...+++++.++|+||||||||+..+++.+.....++++||+||||||+..++..++ ...+|+++.|+.++|
T Consensus 281 ~~-~~~-~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~--~~~~~~v~~l~~~ea 356 (1153)
T PLN03210 281 IK-IYH-LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHG--IDHIYEVCLPSNELA 356 (1153)
T ss_pred cc-cCC-HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcC--CCeEEEecCCCHHHH
Confidence 11 112 26788899999999999999999999999988888999999999999999988776 678999999999999
Q ss_pred HHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCccccC
Q 037291 313 FEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNPLVLK 349 (349)
Q Consensus 313 ~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLalk 349 (349)
++||+++||++..+++++.+++++|+++|+|+||||+
T Consensus 357 ~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~ 393 (1153)
T PLN03210 357 LEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLN 393 (1153)
T ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHH
Confidence 9999999999887888899999999999999999985
No 2
>PLN03194 putative disease resistance protein; Provisional
Probab=100.00 E-value=2.7e-33 Score=227.08 Aligned_cols=119 Identities=33% Similarity=0.524 Sum_probs=105.8
Q ss_pred CCcccccCCccccHHHHHHHhhCceEEEEecCCCCCchhhHHHHHHHHHhhhhCCCeEEEEeeecCCcccccc-cCchHH
Q 037291 1 MDDEKLRRGDEISDALLNAIQGSKISVVIFSKDYGSSKWCLNELVKILECKHTNRQIIIPVFYGVSPSDVRHQ-TGIFKH 79 (349)
Q Consensus 1 ~d~~~~~~g~~~~~~i~~ai~~s~~~ivv~S~~y~~S~~cl~El~~i~~~~~~~~~~vlPvfy~v~p~~vr~~-~g~~~~ 79 (349)
+|+.++++|+.|.++|.+||++|+++|||||++|++|+|||+||++|++|. ..|+||||+|+|++||+| .|.
T Consensus 59 ~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WCLdEL~~I~e~~----~~ViPIFY~VdPsdVr~q~~~~--- 131 (187)
T PLN03194 59 LDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFCLHELALIMESK----KRVIPIFCDVKPSQLRVVDNGT--- 131 (187)
T ss_pred EcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhHHHHHHHHHHcC----CEEEEEEecCCHHHhhccccCC---
Confidence 478899999999999999999999999999999999999999999999874 479999999999999997 442
Q ss_pred HHHHhHhhcccChHHHHHHHHHHHHhhcccCCCCcc-cchhHHHHHHHHHhhhhcccc
Q 037291 80 GFDQLKQHFEEKPEMVQRWRDALRETSGLAGHESTK-FRHDAELVNKIVEDVLKNLEK 136 (349)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~wr~al~~~~~~~g~~~~~-~~~e~~~i~~iv~~v~~~l~~ 136 (349)
...+++++||+||+++++++|+++.. ..+|+++|++|+..|.+++..
T Consensus 132 ----------~~~e~v~~Wr~AL~~va~l~G~~~~~~~~~e~e~i~~iv~~v~k~l~~ 179 (187)
T PLN03194 132 ----------CPDEEIRRFNWALEEAKYTVGLTFDSLKGNWSEVVTMASDAVIKNLIE 179 (187)
T ss_pred ----------CCHHHHHHHHHHHHHHhccccccCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 13467999999999999999998764 345999999999999988743
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.97 E-value=2.8e-32 Score=246.79 Aligned_cols=193 Identities=35% Similarity=0.504 Sum_probs=148.3
Q ss_pred ccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHh--hhcCCcceEEEEeccccccCCCChHHHHHHHHHHh
Q 037291 150 LNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQ--FTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTI 227 (349)
Q Consensus 150 r~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~--~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~ 227 (349)
||.++++|.+.|... +++.++|+|+||||+||||||.+++++ ++..|+.++|+. .+. .....+++..++.++
T Consensus 1 re~~~~~l~~~L~~~-~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~----~~~-~~~~~~~~~~i~~~l 74 (287)
T PF00931_consen 1 REKEIEKLKDWLLDN-SNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVS----LSK-NPSLEQLLEQILRQL 74 (287)
T ss_dssp -HHHHHHHHHHHHTT-TTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEE----EES--SCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhCC-CCCeEEEEEEcCCcCCcceeeeecccccccccccccccccc----ccc-ccccccccccccccc
Confidence 788999999999886 478999999999999999999999998 888999999997 443 455588899999888
Q ss_pred hcccccc---cC-CCchHHHHHHhCCCeEEEEEeCCCChhHHHHHhcccCCCCCCcEEEEEeCChhHHHhcCCCCCcEEE
Q 037291 228 LSEKLEV---AG-ANIPHFTKERVWRMKVLIVLDDVNEVGQLEGLIGELDQFGPGSRIVVTTRDKGVLEKFRGEEKKIHR 303 (349)
Q Consensus 228 ~~~~~~~---~~-~~~~~~~~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IIiTtR~~~~~~~~~~~~~~~~~ 303 (349)
....... .+ ......+.+.+.++++|||||||++...|+.+...++....|++||+|||+..++..+.. ....++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~-~~~~~~ 153 (287)
T PF00931_consen 75 GEPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGG-TDKVIE 153 (287)
T ss_dssp TCC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHS-CEEEEE
T ss_pred cccccccccccccccccccchhhhccccceeeeeeeccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 7764322 12 446688899999999999999999999998888777777779999999999988776642 267999
Q ss_pred cCCCCHHHHHHHHHhhhcCCC-CCCchHHHHHHHHHHHhcCCccccC
Q 037291 304 VNGLEFEEAFEHFCNFAFKEN-HCPTNLNWHSRRVVEYAKGNPLVLK 349 (349)
Q Consensus 304 l~~L~~~ea~~Lf~~~a~~~~-~~~~~~~~~~~~i~~~~~G~PLalk 349 (349)
+++|+.+||++||++.++... ...+...+.+++|++.|+|+||||+
T Consensus 154 l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~ 200 (287)
T PF00931_consen 154 LEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALK 200 (287)
T ss_dssp CSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999997654 2334455678999999999999984
No 4
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.97 E-value=2.6e-30 Score=260.55 Aligned_cols=192 Identities=29% Similarity=0.359 Sum_probs=170.5
Q ss_pred ccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHh---hhcCCcceEEEEeccccccCCCChHHHHHHHH
Q 037291 148 VGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQ---FTGEFDGSCFMSDVRRNSETGGGLEHLQKEML 224 (349)
Q Consensus 148 vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~---~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll 224 (349)
||.+..++++...|..+ +..+++|+||||+||||||++++++ ++.+|+..+|+. +|+ .+....++.+++
T Consensus 161 VG~e~~~~kl~~~L~~d---~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~----VSk-~f~~~~iq~~Il 232 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMED---DVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVV----VSK-EFTTRKIQQTIL 232 (889)
T ss_pred ccHHHHHHHHHHHhccC---CCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEE----Ecc-cccHHhHHHHHH
Confidence 99999999999999876 3499999999999999999999995 568899999999 887 899999999999
Q ss_pred HHhhcccccccC---CCchHHHHHHhCCCeEEEEEeCCCChhHHHHHhcccCCCCCCcEEEEEeCChhHHHh-cCCCCCc
Q 037291 225 STILSEKLEVAG---ANIPHFTKERVWRMKVLIVLDDVNEVGQLEGLIGELDQFGPGSRIVVTTRDKGVLEK-FRGEEKK 300 (349)
Q Consensus 225 ~~~~~~~~~~~~---~~~~~~~~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IIiTtR~~~~~~~-~~~~~~~ 300 (349)
..++........ +.++..+.+.|.++|+||||||||+...|+.+..+++...+||+|++|||+..|+.. ++ ...
T Consensus 233 ~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~--~~~ 310 (889)
T KOG4658|consen 233 ERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMG--VDY 310 (889)
T ss_pred HHhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhcccc--CCc
Confidence 998775544422 567788999999999999999999999999999999988889999999999999988 65 688
Q ss_pred EEEcCCCCHHHHHHHHHhhhcCCC-CCCchHHHHHHHHHHHhcCCccccC
Q 037291 301 IHRVNGLEFEEAFEHFCNFAFKEN-HCPTNLNWHSRRVVEYAKGNPLVLK 349 (349)
Q Consensus 301 ~~~l~~L~~~ea~~Lf~~~a~~~~-~~~~~~~~~~~~i~~~~~G~PLalk 349 (349)
.++++.|+.+|||.||++.+|... ...+...+++++++++|+|+|||++
T Consensus 311 ~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~ 360 (889)
T KOG4658|consen 311 PIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALN 360 (889)
T ss_pred cccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHH
Confidence 999999999999999999998763 2224478999999999999999984
No 5
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.70 E-value=5.3e-18 Score=136.72 Aligned_cols=102 Identities=34% Similarity=0.565 Sum_probs=90.1
Q ss_pred CcccccCCccccHHHHHHHhhCceEEEEecCCCCCchhhHHHHHHHHHhhhhCC--CeEEEEeeecCCcccc-cccCchH
Q 037291 2 DDEKLRRGDEISDALLNAIQGSKISVVIFSKDYGSSKWCLNELVKILECKHTNR--QIIIPVFYGVSPSDVR-HQTGIFK 78 (349)
Q Consensus 2 d~~~~~~g~~~~~~i~~ai~~s~~~ivv~S~~y~~S~~cl~El~~i~~~~~~~~--~~vlPvfy~v~p~~vr-~~~g~~~ 78 (349)
++.++.+|..+.++|.++|++|+++|+|||++|++|.||+.||..++++....+ ..|+||||+|.+++++ .+.+.|.
T Consensus 34 ~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~ 113 (141)
T PF01582_consen 34 DERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEALERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFL 113 (141)
T ss_dssp HHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHHHHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHH
T ss_pred echhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhhhhccccccccceeeEeccCChhhcChhhhHHHH
Confidence 466799999999999999999999999999999999999999999999997755 7999999999999999 7999999
Q ss_pred HHHHHhHhhcccC--hHHHHHHHHHHH
Q 037291 79 HGFDQLKQHFEEK--PEMVQRWRDALR 103 (349)
Q Consensus 79 ~~~~~~~~~~~~~--~~~v~~wr~al~ 103 (349)
..+.......... ..+...|++++.
T Consensus 114 ~~~~~~~~w~~~~~~~~~~~fW~~l~~ 140 (141)
T PF01582_consen 114 LRFLTYLRWPDDDSREDRSWFWKKLRY 140 (141)
T ss_dssp HHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred HHhhhheeCCCCCCccHHHHHHHHHhc
Confidence 9998877776654 456889998764
No 6
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.46 E-value=2.9e-13 Score=118.22 Aligned_cols=191 Identities=19% Similarity=0.199 Sum_probs=98.9
Q ss_pred cccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHH---
Q 037291 147 LVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEM--- 223 (349)
Q Consensus 147 ~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l--- 223 (349)
|+||+.++++|.+++..+ ..+.+.|+|+.|+|||+|++.+.+.....-...+|+..... ........+
T Consensus 1 F~gR~~el~~l~~~l~~~---~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~------~~~~~~~~~~~~ 71 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG---PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEE------SNESSLRSFIEE 71 (234)
T ss_dssp S-S-HHHHHHHHHCHHH-----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTB------SHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh---cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccc------hhhhHHHHHHHH
Confidence 799999999999999764 46788899999999999999999987544334444442211 111112221
Q ss_pred -------HHHhhcccc-----------cccC-CCchHHHHHHhC--CCeEEEEEeCCCChh-------H-HHHHhcccCC
Q 037291 224 -------LSTILSEKL-----------EVAG-ANIPHFTKERVW--RMKVLIVLDDVNEVG-------Q-LEGLIGELDQ 274 (349)
Q Consensus 224 -------l~~~~~~~~-----------~~~~-~~~~~~~~~~l~--~k~~LlVlDdv~~~~-------~-~~~l~~~~~~ 274 (349)
...+..... .... ..+ ..+.+.+. +++++||+||++... . +..+...+..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~ 150 (234)
T PF01637_consen 72 TSLADELSEALGISIPSITLEKISKDLSEDSFSAL-ERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDS 150 (234)
T ss_dssp HHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--H-HHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcccccchhhhhcchhhHHHHH-HHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhh
Confidence 111111100 0011 222 23333332 345999999996444 1 1222222221
Q ss_pred --CCCCcEEEEEeCChhHHHhcC------CCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCcc
Q 037291 275 --FGPGSRIVVTTRDKGVLEKFR------GEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNPL 346 (349)
Q Consensus 275 --~~~gs~IIiTtR~~~~~~~~~------~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL 346 (349)
......+|+++....+..... ......+.+++|+.+++.+++....-.. ..-+...+..++|+..+||+|.
T Consensus 151 ~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~ 229 (234)
T PF01637_consen 151 LLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPR 229 (234)
T ss_dssp ----TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HH
T ss_pred ccccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHH
Confidence 123344555555555443310 0133559999999999999998864222 1101123457999999999998
Q ss_pred cc
Q 037291 347 VL 348 (349)
Q Consensus 347 al 348 (349)
.|
T Consensus 230 ~l 231 (234)
T PF01637_consen 230 YL 231 (234)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 7
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=99.44 E-value=7.2e-13 Score=106.58 Aligned_cols=92 Identities=36% Similarity=0.662 Sum_probs=78.0
Q ss_pred HHHHHHHhhCceEEEEecCCCCCchhhHHHHHHHHHhhhh-CCCeEEEEeeecCCcccccccCchHHHHHHhHhhcccCh
Q 037291 14 DALLNAIQGSKISVVIFSKDYGSSKWCLNELVKILECKHT-NRQIIIPVFYGVSPSDVRHQTGIFKHGFDQLKQHFEEKP 92 (349)
Q Consensus 14 ~~i~~ai~~s~~~ivv~S~~y~~S~~cl~El~~i~~~~~~-~~~~vlPvfy~v~p~~vr~~~g~~~~~~~~~~~~~~~~~ 92 (349)
.+|.++|++|++.|+|+|++|..|.||..|+..++.+... ....||||+|+..|+.+..+.+.+...+.....+..+..
T Consensus 46 ~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~ 125 (140)
T smart00255 46 EEIDEAIEKSRIAIVVLSPNYAESEWCLDELVAALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDE 125 (140)
T ss_pred HHHHHHHHHCcEEEEEECcccccChhHHHHHHHHHHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCch
Confidence 3999999999999999999999999999999999988755 567999999999999999999999999887744444443
Q ss_pred HHHHHHHHHHHHhh
Q 037291 93 EMVQRWRDALRETS 106 (349)
Q Consensus 93 ~~v~~wr~al~~~~ 106 (349)
.+ ..|++.+..++
T Consensus 126 ~~-~fW~~~~~~l~ 138 (140)
T smart00255 126 KE-RFWKKALYAVP 138 (140)
T ss_pred hH-HHHHHHHHHhc
Confidence 22 68998877654
No 8
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.39 E-value=9.9e-12 Score=117.55 Aligned_cols=174 Identities=16% Similarity=0.135 Sum_probs=110.5
Q ss_pred CCCCCcccccchhhhHHHhhhhcC-CCCeeEEEEeccCccchHHHHHHHHHhhhcCCc--ceEEEEeccccccCCCChHH
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDL-SDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFD--GSCFMSDVRRNSETGGGLEH 218 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~-~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~ 218 (349)
..++.|+||+.++++|...|.... ....+.+.|+|++|+|||++++.+++.+..... ..+++. ... ..+...
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in-~~~----~~~~~~ 101 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYIN-CQI----DRTRYA 101 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEE-CCc----CCCHHH
Confidence 456789999999999999986531 234566789999999999999999998765542 233332 221 345667
Q ss_pred HHHHHHHHhhcccccccC---CCchHHHHHHhC--CCeEEEEEeCCCChh------HHHHHhcccCCCC-CCcEEEEEeC
Q 037291 219 LQKEMLSTILSEKLEVAG---ANIPHFTKERVW--RMKVLIVLDDVNEVG------QLEGLIGELDQFG-PGSRIVVTTR 286 (349)
Q Consensus 219 l~~~ll~~~~~~~~~~~~---~~~~~~~~~~l~--~k~~LlVlDdv~~~~------~~~~l~~~~~~~~-~gs~IIiTtR 286 (349)
++..++.++.....+... ..+...+.+.+. +++.+||||+++... .+..+........ ....+|.++.
T Consensus 102 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~ 181 (394)
T PRK00411 102 IFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISS 181 (394)
T ss_pred HHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEEC
Confidence 778888877653222111 233344555553 457899999997542 3444443332221 1233666666
Q ss_pred ChhHHHhcC-----CCCCcEEEcCCCCHHHHHHHHHhhh
Q 037291 287 DKGVLEKFR-----GEEKKIHRVNGLEFEEAFEHFCNFA 320 (349)
Q Consensus 287 ~~~~~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a 320 (349)
+..+...+. ......+.+++++.++..+++..++
T Consensus 182 ~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~ 220 (394)
T PRK00411 182 DLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRV 220 (394)
T ss_pred CcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHH
Confidence 554433221 0113567999999999999998765
No 9
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.39 E-value=1.4e-11 Score=110.37 Aligned_cols=174 Identities=17% Similarity=0.119 Sum_probs=100.7
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHH--
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKE-- 245 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~-- 245 (349)
..+.+.|+|++|+|||||++.+++.+...-...+++.+ + ..+..+++..++..++..............+..
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~----~--~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l 115 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVN----T--RVDAEDLLRMVAADFGLETEGRDKAALLRELEDFL 115 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeC----C--CCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Confidence 34688999999999999999999876532111223321 1 334567777777666443221111111122222
Q ss_pred ---HhCCCeEEEEEeCCCChh--HHHHHhc---ccCCCCCCcEEEEEeCChhHHHhc--------CCCCCcEEEcCCCCH
Q 037291 246 ---RVWRMKVLIVLDDVNEVG--QLEGLIG---ELDQFGPGSRIVVTTRDKGVLEKF--------RGEEKKIHRVNGLEF 309 (349)
Q Consensus 246 ---~l~~k~~LlVlDdv~~~~--~~~~l~~---~~~~~~~gs~IIiTtR~~~~~~~~--------~~~~~~~~~l~~L~~ 309 (349)
...+++.++|+||++... .++.+.. ..........|++|.... ....+ .......+++++|+.
T Consensus 116 ~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~ 194 (269)
T TIGR03015 116 IEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDR 194 (269)
T ss_pred HHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCH
Confidence 236778999999997653 3443322 111112223455655432 22111 111245689999999
Q ss_pred HHHHHHHHhhhcCCC--CCCchHHHHHHHHHHHhcCCcccc
Q 037291 310 EEAFEHFCNFAFKEN--HCPTNLNWHSRRVVEYAKGNPLVL 348 (349)
Q Consensus 310 ~ea~~Lf~~~a~~~~--~~~~~~~~~~~~i~~~~~G~PLal 348 (349)
+|..+++...+.... ....-..+..+.|++.++|+|..|
T Consensus 195 ~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i 235 (269)
T TIGR03015 195 EETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLI 235 (269)
T ss_pred HHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHH
Confidence 999999887653221 111123467899999999999865
No 10
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.37 E-value=3.1e-11 Score=113.02 Aligned_cols=199 Identities=15% Similarity=0.138 Sum_probs=117.2
Q ss_pred CCCCCcccccchhhhHHHhhhhcC-CCCeeEEEEeccCccchHHHHHHHHHhhhcCCc------ceEEEEeccccccCCC
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDL-SDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFD------GSCFMSDVRRNSETGG 214 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~-~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~------~~~~~~~~~~~~~~~~ 214 (349)
..++.++||+.++++|...|.... ....+.+.|+|++|+|||++++.+++.+..... ..+|+. .. . ..
T Consensus 12 ~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in-~~---~-~~ 86 (365)
T TIGR02928 12 YVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVN-CQ---I-LD 86 (365)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEE-CC---C-CC
Confidence 556789999999999999987531 234567899999999999999999987653322 233333 22 1 34
Q ss_pred ChHHHHHHHHHHhhc--ccccccC---CCchHHHHHHh--CCCeEEEEEeCCCChh-----HHHHHhccc--CCCC-CCc
Q 037291 215 GLEHLQKEMLSTILS--EKLEVAG---ANIPHFTKERV--WRMKVLIVLDDVNEVG-----QLEGLIGEL--DQFG-PGS 279 (349)
Q Consensus 215 ~~~~l~~~ll~~~~~--~~~~~~~---~~~~~~~~~~l--~~k~~LlVlDdv~~~~-----~~~~l~~~~--~~~~-~gs 279 (349)
+...++..++.++.. ...+... ..+...+.+.+ .+++++||||+++... .+..+.... .... ...
T Consensus 87 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v 166 (365)
T TIGR02928 87 TLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKV 166 (365)
T ss_pred CHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeE
Confidence 456777788887742 1111111 12223344444 3568899999997651 133333221 1111 233
Q ss_pred EEEEEeCChhHHHhcC-----CCCCcEEEcCCCCHHHHHHHHHhhhc---CCCCCCchHHHHHHHHHHHhcCCc
Q 037291 280 RIVVTTRDKGVLEKFR-----GEEKKIHRVNGLEFEEAFEHFCNFAF---KENHCPTNLNWHSRRVVEYAKGNP 345 (349)
Q Consensus 280 ~IIiTtR~~~~~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~---~~~~~~~~~~~~~~~i~~~~~G~P 345 (349)
.+|.+++.......+. ......+.+++++.+|..+++..++- ......++..+.+..++..+.|.|
T Consensus 167 ~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~ 240 (365)
T TIGR02928 167 GVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDA 240 (365)
T ss_pred EEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCH
Confidence 5555565444322221 11135689999999999999988763 222222222334455666666765
No 11
>PF05729 NACHT: NACHT domain
Probab=99.36 E-value=1.1e-11 Score=102.26 Aligned_cols=143 Identities=20% Similarity=0.321 Sum_probs=85.1
Q ss_pred eEEEEeccCccchHHHHHHHHHhhhcCCc-----ceEEEEeccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHH
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQFTGEFD-----GSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTK 244 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~~~~f~-----~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~ 244 (349)
+++.|+|.+|+||||+++.++..+..... ...++...+.... ......+...+..+....... ....+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~-----~~~~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISD-SNNSRSLADLLFDQLPESIAP-----IEELLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhh-ccccchHHHHHHHhhccchhh-----hHHHHH
Confidence 57899999999999999999987755432 2233333333332 111123333333332221111 111122
Q ss_pred -HHhCCCeEEEEEeCCCChhH---------HHHHhc-ccCC-CCCCcEEEEEeCChhH---HHhcCCCCCcEEEcCCCCH
Q 037291 245 -ERVWRMKVLIVLDDVNEVGQ---------LEGLIG-ELDQ-FGPGSRIVVTTRDKGV---LEKFRGEEKKIHRVNGLEF 309 (349)
Q Consensus 245 -~~l~~k~~LlVlDdv~~~~~---------~~~l~~-~~~~-~~~gs~IIiTtR~~~~---~~~~~~~~~~~~~l~~L~~ 309 (349)
-....++++||||++++... +..++. .+.. ..++.++|+|+|.... ...+. ....+++.+|+.
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~--~~~~~~l~~~~~ 152 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLK--QAQILELEPFSE 152 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcC--CCcEEEECCCCH
Confidence 22356799999999974432 222222 2222 3568999999998766 22233 346899999999
Q ss_pred HHHHHHHHhhh
Q 037291 310 EEAFEHFCNFA 320 (349)
Q Consensus 310 ~ea~~Lf~~~a 320 (349)
++..+++.++.
T Consensus 153 ~~~~~~~~~~f 163 (166)
T PF05729_consen 153 EDIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHHh
Confidence 99999987654
No 12
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.27 E-value=9.6e-11 Score=122.33 Aligned_cols=188 Identities=15% Similarity=0.143 Sum_probs=114.6
Q ss_pred CCCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHH
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQK 221 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 221 (349)
.....+|-|..-++.+.. ....+++.|+|++|.||||++.++.+.. ..++|+. ......+...+..
T Consensus 11 ~~~~~~~~R~rl~~~l~~------~~~~~~~~v~apaG~GKTtl~~~~~~~~----~~~~w~~----l~~~d~~~~~f~~ 76 (903)
T PRK04841 11 VRLHNTVVRERLLAKLSG------ANNYRLVLVTSPAGYGKTTLISQWAAGK----NNLGWYS----LDESDNQPERFAS 76 (903)
T ss_pred CCccccCcchHHHHHHhc------ccCCCeEEEECCCCCCHHHHHHHHHHhC----CCeEEEe----cCcccCCHHHHHH
Confidence 445677888765555532 2357899999999999999999988643 2578886 3332445566666
Q ss_pred HHHHHhhcccccc-----------cCCCch---HHHHHHh-C-CCeEEEEEeCCCChh--HH-HHHhcccCCCCCCcEEE
Q 037291 222 EMLSTILSEKLEV-----------AGANIP---HFTKERV-W-RMKVLIVLDDVNEVG--QL-EGLIGELDQFGPGSRIV 282 (349)
Q Consensus 222 ~ll~~~~~~~~~~-----------~~~~~~---~~~~~~l-~-~k~~LlVlDdv~~~~--~~-~~l~~~~~~~~~gs~II 282 (349)
.++..+....... ...... ..+...+ . +.+++|||||+...+ .+ +.+...+....++.++|
T Consensus 77 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv 156 (903)
T PRK04841 77 YLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLV 156 (903)
T ss_pred HHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEE
Confidence 6666664221110 001111 1122222 2 679999999996432 22 23333333345677898
Q ss_pred EEeCChhHH--HhcCCCCCcEEEcC----CCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCccccC
Q 037291 283 VTTRDKGVL--EKFRGEEKKIHRVN----GLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNPLVLK 349 (349)
Q Consensus 283 iTtR~~~~~--~~~~~~~~~~~~l~----~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLalk 349 (349)
||||...-+ ..+.. .....++. +|+.+|+.+||....... .+ .+.+.++++.|+|+|++|+
T Consensus 157 ~~sR~~~~~~~~~l~~-~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~--~~---~~~~~~l~~~t~Gwp~~l~ 223 (903)
T PRK04841 157 VLSRNLPPLGIANLRV-RDQLLEIGSQQLAFDHQEAQQFFDQRLSSP--IE---AAESSRLCDDVEGWATALQ 223 (903)
T ss_pred EEeCCCCCCchHhHHh-cCcceecCHHhCCCCHHHHHHHHHhccCCC--CC---HHHHHHHHHHhCChHHHHH
Confidence 999974211 11110 12345566 999999999998765221 11 2347889999999999873
No 13
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.25 E-value=1.3e-10 Score=105.07 Aligned_cols=148 Identities=20% Similarity=0.319 Sum_probs=94.5
Q ss_pred CCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHH
Q 037291 166 SDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKE 245 (349)
Q Consensus 166 ~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~ 245 (349)
++.+....+||++|+||||||+.++......|.. .+....+..++..- +. ..-+.
T Consensus 45 ~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~---------~sAv~~gvkdlr~i-~e---------------~a~~~ 99 (436)
T COG2256 45 AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEA---------LSAVTSGVKDLREI-IE---------------EARKN 99 (436)
T ss_pred cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEE---------eccccccHHHHHHH-HH---------------HHHHH
Confidence 4467888899999999999999999977655442 22223444444322 21 11233
Q ss_pred HhCCCeEEEEEeCCC--ChhHHHHHhcccCCCCCCcEEEE--EeCChhH---HHhcCCCCCcEEEcCCCCHHHHHHHHHh
Q 037291 246 RVWRMKVLIVLDDVN--EVGQLEGLIGELDQFGPGSRIVV--TTRDKGV---LEKFRGEEKKIHRVNGLEFEEAFEHFCN 318 (349)
Q Consensus 246 ~l~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IIi--TtR~~~~---~~~~~~~~~~~~~l~~L~~~ea~~Lf~~ 318 (349)
...+++.+|++|+|. |..|-+.|++.+. .|..|+| ||.++.. ...+. ...++++++|+.++-.+++.+
T Consensus 100 ~~~gr~tiLflDEIHRfnK~QQD~lLp~vE---~G~iilIGATTENPsF~ln~ALlS--R~~vf~lk~L~~~di~~~l~r 174 (436)
T COG2256 100 RLLGRRTILFLDEIHRFNKAQQDALLPHVE---NGTIILIGATTENPSFELNPALLS--RARVFELKPLSSEDIKKLLKR 174 (436)
T ss_pred HhcCCceEEEEehhhhcChhhhhhhhhhhc---CCeEEEEeccCCCCCeeecHHHhh--hhheeeeecCCHHHHHHHHHH
Confidence 345889999999995 5567777777664 5766665 6666642 11122 457999999999999999987
Q ss_pred hhcCCCCC-----CchHHHHHHHHHHHhcC
Q 037291 319 FAFKENHC-----PTNLNWHSRRVVEYAKG 343 (349)
Q Consensus 319 ~a~~~~~~-----~~~~~~~~~~i~~~~~G 343 (349)
-+...... ..-.++..+-++..++|
T Consensus 175 a~~~~~rgl~~~~~~i~~~a~~~l~~~s~G 204 (436)
T COG2256 175 ALLDEERGLGGQIIVLDEEALDYLVRLSNG 204 (436)
T ss_pred HHhhhhcCCCcccccCCHHHHHHHHHhcCc
Confidence 33221111 11123455667777776
No 14
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.15 E-value=1.4e-10 Score=105.81 Aligned_cols=171 Identities=19% Similarity=0.207 Sum_probs=97.7
Q ss_pred CCcccccchhhhHHHhhhhc--CCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHH
Q 037291 145 NGLVGLNSRIEQIKPFLCMD--LSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKE 222 (349)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~--~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 222 (349)
..|+|++..++.|..++... .....+.+.|+|++|+|||+||+.+++.+...+. ....... .....+ ..
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~----~~~~~~~----~~~~~l-~~ 74 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLK----ITSGPAL----EKPGDL-AA 74 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEE----Eeccchh----cCchhH-HH
Confidence 46999999999999888642 1223566889999999999999999998754321 1111000 111111 11
Q ss_pred HHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCCh--hHHHHHhcccC-------------------CCCCCcEE
Q 037291 223 MLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEV--GQLEGLIGELD-------------------QFGPGSRI 281 (349)
Q Consensus 223 ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~-------------------~~~~gs~I 281 (349)
.+..+ +...+|++|+++.. ...+.+...+. ...+.+-|
T Consensus 75 ~l~~~---------------------~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li 133 (305)
T TIGR00635 75 ILTNL---------------------EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLV 133 (305)
T ss_pred HHHhc---------------------ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEE
Confidence 11111 12235556655422 11111111110 11224455
Q ss_pred EEEeCChhHHHhcCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCccc
Q 037291 282 VVTTRDKGVLEKFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNPLV 347 (349)
Q Consensus 282 IiTtR~~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLa 347 (349)
..||+...+...+.......+++++++.++..+++.+.+...... -..+.+..|++.|+|.|-.
T Consensus 134 ~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~--~~~~al~~ia~~~~G~pR~ 197 (305)
T TIGR00635 134 GATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVE--IEPEAALEIARRSRGTPRI 197 (305)
T ss_pred EecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCC--cCHHHHHHHHHHhCCCcch
Confidence 567776544332211123578999999999999999877433221 2235678899999999953
No 15
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.11 E-value=2.6e-10 Score=105.03 Aligned_cols=174 Identities=18% Similarity=0.184 Sum_probs=101.2
Q ss_pred CCCCCcccccchhhhHHHhhhhc--CCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHH
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMD--LSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHL 219 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~--~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 219 (349)
....+|+|++..++.+..++... .....+.+.|+|++|+|||+||+.+++.+...+. +.. ...... ...
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~---~~~-~~~~~~-----~~~ 92 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIR---ITS-GPALEK-----PGD 92 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeE---EEe-cccccC-----hHH
Confidence 44577999999999998888642 1234567889999999999999999998754321 111 100100 011
Q ss_pred HHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCChh--HHHHHhcccC-------------------CCCCC
Q 037291 220 QKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEVG--QLEGLIGELD-------------------QFGPG 278 (349)
Q Consensus 220 ~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~~--~~~~l~~~~~-------------------~~~~g 278 (349)
+..++..+ +..-+|+||+++... ..+.+...+. ...+.
T Consensus 93 l~~~l~~l---------------------~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~ 151 (328)
T PRK00080 93 LAAILTNL---------------------EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPF 151 (328)
T ss_pred HHHHHHhc---------------------ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCc
Confidence 11111111 123466677775321 1111111110 01123
Q ss_pred cEEEEEeCChhHHHhcCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCccc
Q 037291 279 SRIVVTTRDKGVLEKFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNPLV 347 (349)
Q Consensus 279 s~IIiTtR~~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLa 347 (349)
+-|..|++...+...+.......+++++++.++..+++.+.+...... -..+.+..|++.|+|.|-.
T Consensus 152 ~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~--~~~~~~~~ia~~~~G~pR~ 218 (328)
T PRK00080 152 TLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVE--IDEEGALEIARRSRGTPRI 218 (328)
T ss_pred eEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHHcCCCchH
Confidence 455566665443322211123578999999999999999887543322 2235688999999999953
No 16
>PRK06893 DNA replication initiation factor; Validated
Probab=99.10 E-value=1.6e-09 Score=94.45 Aligned_cols=144 Identities=15% Similarity=0.207 Sum_probs=86.4
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHHHhC
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERVW 248 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~ 248 (349)
.+.+.|||++|+|||+|+..+++..........|+. ... ....... +.+.+.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~----~~~----~~~~~~~--------------------~~~~~~ 90 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIP----LSK----SQYFSPA--------------------VLENLE 90 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEee----HHH----hhhhhHH--------------------HHhhcc
Confidence 467889999999999999999998765555566665 110 0000001 111111
Q ss_pred CCeEEEEEeCCCCh---hHHH-HHhcccCCC-CCCcEEE-EEeCC---------hhHHHhcCCCCCcEEEcCCCCHHHHH
Q 037291 249 RMKVLIVLDDVNEV---GQLE-GLIGELDQF-GPGSRIV-VTTRD---------KGVLEKFRGEEKKIHRVNGLEFEEAF 313 (349)
Q Consensus 249 ~k~~LlVlDdv~~~---~~~~-~l~~~~~~~-~~gs~II-iTtR~---------~~~~~~~~~~~~~~~~l~~L~~~ea~ 313 (349)
+.-+|+|||++.. ..|+ .+...+... ..++.+| +|++. +.+...+. ....+++++++.++.+
T Consensus 91 -~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~--~g~~~~l~~pd~e~~~ 167 (229)
T PRK06893 91 -QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLT--WGEIYQLNDLTDEQKI 167 (229)
T ss_pred -cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHh--cCCeeeCCCCCHHHHH
Confidence 2348999999743 2333 233333222 2355554 44543 24444444 4578999999999999
Q ss_pred HHHHhhhcCCCCCCchHHHHHHHHHHHhcCCc
Q 037291 314 EHFCNFAFKENHCPTNLNWHSRRVVEYAKGNP 345 (349)
Q Consensus 314 ~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~P 345 (349)
+++.+.+....-.. ..+..+-|++.+.|..
T Consensus 168 ~iL~~~a~~~~l~l--~~~v~~~L~~~~~~d~ 197 (229)
T PRK06893 168 IVLQRNAYQRGIEL--SDEVANFLLKRLDRDM 197 (229)
T ss_pred HHHHHHHHHcCCCC--CHHHHHHHHHhccCCH
Confidence 99998886443221 2245666777766643
No 17
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.07 E-value=2.1e-09 Score=101.96 Aligned_cols=174 Identities=16% Similarity=0.269 Sum_probs=104.1
Q ss_pred CCCCCcccccchhhh---HHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHH
Q 037291 142 DSSNGLVGLNSRIEQ---IKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEH 218 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~---l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 218 (349)
.....+||.+..+.. +..++... ..+.+.|+|++|+||||||+.+++.....|.. +. .. ..+...
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~~---~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~---l~----a~--~~~~~~ 76 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEAG---RLSSMILWGPPGTGKTTLARIIAGATDAPFEA---LS----AV--TSGVKD 76 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHcC---CCceEEEECCCCCCHHHHHHHHHHHhCCCEEE---Ee----cc--cccHHH
Confidence 345679999888776 77777544 45678899999999999999999876544321 11 00 112221
Q ss_pred HHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCCh--hHHHHHhcccCCCCCCcEEEE--EeCChh--HHH
Q 037291 219 LQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEV--GQLEGLIGELDQFGPGSRIVV--TTRDKG--VLE 292 (349)
Q Consensus 219 l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIi--TtR~~~--~~~ 292 (349)
.+.++.... .....+++.+|+||+++.. .+.+.+...+. .+..++| ||.+.. +..
T Consensus 77 -ir~ii~~~~---------------~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~ 137 (413)
T PRK13342 77 -LREVIEEAR---------------QRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNP 137 (413)
T ss_pred -HHHHHHHHH---------------HhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccH
Confidence 112221110 0112456789999999754 45555655544 3444444 344332 111
Q ss_pred hcCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCC-chHHHHHHHHHHHhcCCccc
Q 037291 293 KFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCP-TNLNWHSRRVVEYAKGNPLV 347 (349)
Q Consensus 293 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~G~PLa 347 (349)
.+.. ....+++.+|+.++..+++.+.+....... .-..+..+.+++.++|.|..
T Consensus 138 aL~S-R~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~ 192 (413)
T PRK13342 138 ALLS-RAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARR 192 (413)
T ss_pred HHhc-cceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHH
Confidence 1111 346899999999999999987653211111 12245678899999998754
No 18
>PTZ00202 tuzin; Provisional
Probab=99.07 E-value=6.1e-09 Score=96.13 Aligned_cols=212 Identities=15% Similarity=0.140 Sum_probs=123.8
Q ss_pred HHHHHHHHHHhh-------------cccCCCCcccch-h-HHHHHHHHHhhhhcccccc----cccCCCCCcccccchhh
Q 037291 95 VQRWRDALRETS-------------GLAGHESTKFRH-D-AELVNKIVEDVLKNLEKIT----VATDSSNGLVGLNSRIE 155 (349)
Q Consensus 95 v~~wr~al~~~~-------------~~~g~~~~~~~~-e-~~~i~~iv~~v~~~l~~~~----~~~~~~~~~vGr~~~~~ 155 (349)
-+.||-++++-+ ..-||.+++... + +-...--++..++..++.. ..+.....|+||+.++.
T Consensus 193 erd~RY~l~KYsG~vSa~~a~lgv~~vF~wn~r~y~rqQR~~Ql~~Av~tL~~~~~~~~~~~~~lPa~~~~FVGReaEla 272 (550)
T PTZ00202 193 ERDFRYVLTKYSGVVSASVALLGVASVFGWNFKNYRTQQRSYQLKVAVSTLTQPLNPRPSTLQSAPAVIRQFVSREAEES 272 (550)
T ss_pred hhhhhhhHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcccCCCcccccCCCCCccCCCCcHHHHH
Confidence 356888877632 233555555442 1 2223333444554443321 11266789999999999
Q ss_pred hHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHHHhhccccccc
Q 037291 156 QIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVA 235 (349)
Q Consensus 156 ~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~ 235 (349)
.|...|.....+..+++.|.|++|+|||||++.+..... ...++.|. .+..+++..++.+++.......
T Consensus 273 ~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~~qL~vNp-------rg~eElLr~LL~ALGV~p~~~k 341 (550)
T PTZ00202 273 WVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----MPAVFVDV-------RGTEDTLRSVVKALGVPNVEAC 341 (550)
T ss_pred HHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----ceEEEECC-------CCHHHHHHHHHHHcCCCCcccH
Confidence 999999754234467999999999999999999997653 23555433 2568899999999986322211
Q ss_pred CCCchHHHHHHh-----C-CCeEEEEEeCC--CChhH-HHHHhcccCCCCCCcEEEEEeCChhHHHh-cCCCCCcEEEcC
Q 037291 236 GANIPHFTKERV-----W-RMKVLIVLDDV--NEVGQ-LEGLIGELDQFGPGSRIVVTTRDKGVLEK-FRGEEKKIHRVN 305 (349)
Q Consensus 236 ~~~~~~~~~~~l-----~-~k~~LlVlDdv--~~~~~-~~~l~~~~~~~~~gs~IIiTtR~~~~~~~-~~~~~~~~~~l~ 305 (349)
..+...+.+.+ . +++.+||+-== ++..- ++... .+.+-..-|+|++----+.+... ........|-++
T Consensus 342 -~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v-~la~drr~ch~v~evpleslt~~~~~lprldf~~vp 419 (550)
T PTZ00202 342 -GDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVV-ALACDRRLCHVVIEVPLESLTIANTLLPRLDFYLVP 419 (550)
T ss_pred -HHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHH-HHHccchhheeeeeehHhhcchhcccCccceeEecC
Confidence 22333343332 2 56777776421 22211 12111 12222345678776554433111 111134689999
Q ss_pred CCCHHHHHHHHHhh
Q 037291 306 GLEFEEAFEHFCNF 319 (349)
Q Consensus 306 ~L~~~ea~~Lf~~~ 319 (349)
+++.++|.++-.+.
T Consensus 420 ~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 420 NFSRSQAFAYTQHA 433 (550)
T ss_pred CCCHHHHHHHHhhc
Confidence 99999998866543
No 19
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.01 E-value=2.5e-09 Score=90.60 Aligned_cols=173 Identities=20% Similarity=0.210 Sum_probs=98.2
Q ss_pred CCCCCcccccchhhhHHHhhhhc--CCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHH
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMD--LSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHL 219 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~--~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 219 (349)
...++|||-+.-+..+.-++... +.+....+.+||++|+||||||..+++.....|. +.. ..... ...++
T Consensus 21 ~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~---~~s-g~~i~----k~~dl 92 (233)
T PF05496_consen 21 KSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFK---ITS-GPAIE----KAGDL 92 (233)
T ss_dssp SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EE---EEE-CCC------SCHHH
T ss_pred CCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeE---ecc-chhhh----hHHHH
Confidence 55689999999998887766532 2345788899999999999999999998876653 121 00011 11111
Q ss_pred HHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCCh--hHHHHHhcccCC--------CC-----------CC
Q 037291 220 QKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEV--GQLEGLIGELDQ--------FG-----------PG 278 (349)
Q Consensus 220 ~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~--------~~-----------~g 278 (349)
. .++ ..+ +++.+|++|+++.. .+-+.+.+.+.+ .+ +-
T Consensus 93 ~-~il--------------------~~l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~F 150 (233)
T PF05496_consen 93 A-AIL--------------------TNL-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPF 150 (233)
T ss_dssp H-HHH--------------------HT---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----
T ss_pred H-HHH--------------------Hhc-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCc
Confidence 1 111 111 23557888999643 333444443321 12 23
Q ss_pred cEEEEEeCChhHHHhcCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCcc
Q 037291 279 SRIVVTTRDKGVLEKFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNPL 346 (349)
Q Consensus 279 s~IIiTtR~~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL 346 (349)
+-|=.|||...+...+...-.-+.+++..+.+|-.++..+.+..-+ .+-.++.+.+|++.+.|-|-
T Consensus 151 TligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~--i~i~~~~~~~Ia~rsrGtPR 216 (233)
T PF05496_consen 151 TLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN--IEIDEDAAEEIARRSRGTPR 216 (233)
T ss_dssp EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT---EE-HHHHHHHHHCTTTSHH
T ss_pred eEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC--CCcCHHHHHHHHHhcCCChH
Confidence 4555788877665555432334568999999999999988764322 22234678999999999983
No 20
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.00 E-value=3e-09 Score=92.70 Aligned_cols=169 Identities=15% Similarity=0.200 Sum_probs=97.0
Q ss_pred CCCccc--ccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHH
Q 037291 144 SNGLVG--LNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQK 221 (349)
Q Consensus 144 ~~~~vG--r~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 221 (349)
.++|++ -+..++.+..++.. .....+.|+|++|+|||+||+.+++.........+|+. +.... .-..
T Consensus 14 ~~~~~~~~~~~~~~~l~~~~~~---~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~-~~~~~-------~~~~ 82 (226)
T TIGR03420 14 FDNFYAGGNAELLAALRQLAAG---KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLP-LAELA-------QADP 82 (226)
T ss_pred hcCcCcCCcHHHHHHHHHHHhc---CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEe-HHHHH-------HhHH
Confidence 345552 23356666666543 24578889999999999999999987654444444554 11111 0000
Q ss_pred HHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCChh---H-HHHHhcccCCC-CCCcEEEEEeCChh-------
Q 037291 222 EMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEVG---Q-LEGLIGELDQF-GPGSRIVVTTRDKG------- 289 (349)
Q Consensus 222 ~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~~---~-~~~l~~~~~~~-~~gs~IIiTtR~~~------- 289 (349)
.++ ..+.. .-+|||||++... . .+.+...+... ..+..+|+||+...
T Consensus 83 ~~~--------------------~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~ 141 (226)
T TIGR03420 83 EVL--------------------EGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRL 141 (226)
T ss_pred HHH--------------------hhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCccc
Confidence 110 11112 2389999996432 1 33333332211 23457888887432
Q ss_pred --HHHhcCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCcccc
Q 037291 290 --VLEKFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNPLVL 348 (349)
Q Consensus 290 --~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal 348 (349)
+...+. ....+++++++.++...++...+-...-+ -..+..+.+.+.+.|+|..|
T Consensus 142 ~~L~~r~~--~~~~i~l~~l~~~e~~~~l~~~~~~~~~~--~~~~~l~~L~~~~~gn~r~L 198 (226)
T TIGR03420 142 PDLRTRLA--WGLVFQLPPLSDEEKIAALQSRAARRGLQ--LPDEVADYLLRHGSRDMGSL 198 (226)
T ss_pred HHHHHHHh--cCeeEecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhccCCHHHH
Confidence 122221 24679999999999999998765322211 12245677888899988654
No 21
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.97 E-value=1.6e-08 Score=93.53 Aligned_cols=193 Identities=15% Similarity=0.136 Sum_probs=105.2
Q ss_pred CCCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCC-cc-eEEEEeccccccCCCChHHH
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEF-DG-SCFMSDVRRNSETGGGLEHL 219 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f-~~-~~~~~~~~~~~~~~~~~~~l 219 (349)
.....++|++..++.+..++... ..+.+.|+|++|+||||+|+.+++.+.... .. .+++. ........ ...+
T Consensus 12 ~~~~~~~g~~~~~~~L~~~~~~~---~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~-~~~~~~~~--~~~~ 85 (337)
T PRK12402 12 ALLEDILGQDEVVERLSRAVDSP---NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFN-VADFFDQG--KKYL 85 (337)
T ss_pred CcHHHhcCCHHHHHHHHHHHhCC---CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEec-hhhhhhcc--hhhh
Confidence 33467899999999999888654 445688999999999999999998764332 21 22222 11110000 0000
Q ss_pred HH--HHHHHhhcccccccCCCchHHHHH----H-----hCCCeEEEEEeCCCChh--HHHHHhcccCCCCCCcEEEEEeC
Q 037291 220 QK--EMLSTILSEKLEVAGANIPHFTKE----R-----VWRMKVLIVLDDVNEVG--QLEGLIGELDQFGPGSRIVVTTR 286 (349)
Q Consensus 220 ~~--~ll~~~~~~~~~~~~~~~~~~~~~----~-----l~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IIiTtR 286 (349)
.. .... ..... ..........+++ . +...+-+|||||++... ....+...+......+++|+|+.
T Consensus 86 ~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~ 163 (337)
T PRK12402 86 VEDPRFAH-FLGTD-KRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATR 163 (337)
T ss_pred hcCcchhh-hhhhh-hhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeC
Confidence 00 0000 00000 0000000111211 1 11334589999997542 23444444444445577887775
Q ss_pred Chh-HHHhcCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCc
Q 037291 287 DKG-VLEKFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNP 345 (349)
Q Consensus 287 ~~~-~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~P 345 (349)
+.. +...+.. ....+++.+++.++...++...+-..+.. -..+.++.+++.++|.+
T Consensus 164 ~~~~~~~~L~s-r~~~v~~~~~~~~~~~~~l~~~~~~~~~~--~~~~al~~l~~~~~gdl 220 (337)
T PRK12402 164 QPSKLIPPIRS-RCLPLFFRAPTDDELVDVLESIAEAEGVD--YDDDGLELIAYYAGGDL 220 (337)
T ss_pred ChhhCchhhcC-CceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCH
Confidence 432 2222221 34678999999999999888765433221 12345677888888764
No 22
>PLN03025 replication factor C subunit; Provisional
Probab=98.96 E-value=2.2e-08 Score=91.82 Aligned_cols=181 Identities=14% Similarity=0.215 Sum_probs=105.9
Q ss_pred CCCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhc-CCcceEEEEeccccccCCCChHHHH
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTG-EFDGSCFMSDVRRNSETGGGLEHLQ 220 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~ 220 (349)
.....++|.+..++.|..++... ..+.+.++|++|+||||+|+.+++.+.. .|...+.-.+ .+. ..+.. ..
T Consensus 10 ~~l~~~~g~~~~~~~L~~~~~~~---~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln---~sd-~~~~~-~v 81 (319)
T PLN03025 10 TKLDDIVGNEDAVSRLQVIARDG---NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELN---ASD-DRGID-VV 81 (319)
T ss_pred CCHHHhcCcHHHHHHHHHHHhcC---CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeec---ccc-cccHH-HH
Confidence 44567899888888888877644 4455779999999999999999998632 3332111111 111 11222 22
Q ss_pred HHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCChh--HHHHHhcccCCCCCCcEEEEEeCCh-hHHHhcCCC
Q 037291 221 KEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEVG--QLEGLIGELDQFGPGSRIVVTTRDK-GVLEKFRGE 297 (349)
Q Consensus 221 ~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IIiTtR~~-~~~~~~~~~ 297 (349)
+..+..+...... ...++.-++|||+++... ..+.+...+......+++|+++... .+...+..
T Consensus 82 r~~i~~~~~~~~~------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~S- 148 (319)
T PLN03025 82 RNKIKMFAQKKVT------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQS- 148 (319)
T ss_pred HHHHHHHHhcccc------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHH-
Confidence 2222211110000 002346789999997553 3444555454445667777777543 22221110
Q ss_pred CCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCc
Q 037291 298 EKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNP 345 (349)
Q Consensus 298 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~P 345 (349)
....+++++++.++....+...+-..+-..+ .+....+++.++|..
T Consensus 149 Rc~~i~f~~l~~~~l~~~L~~i~~~egi~i~--~~~l~~i~~~~~gDl 194 (319)
T PLN03025 149 RCAIVRFSRLSDQEILGRLMKVVEAEKVPYV--PEGLEAIIFTADGDM 194 (319)
T ss_pred hhhcccCCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCH
Confidence 2357999999999999988877744332211 245677888888754
No 23
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.95 E-value=1.4e-08 Score=99.93 Aligned_cols=188 Identities=15% Similarity=0.146 Sum_probs=108.6
Q ss_pred CCCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHH
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQK 221 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 221 (349)
...+++||.+..++.|..++..+ .-...+.++|+.|+||||+|+.+++.+...-.. . .. .++.=....
T Consensus 13 qtFdEVIGQe~Vv~~L~~aL~~g--RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~----~-----~~-PCG~C~sCr 80 (830)
T PRK07003 13 KDFASLVGQEHVVRALTHALDGG--RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGV----T-----SQ-PCGVCRACR 80 (830)
T ss_pred CcHHHHcCcHHHHHHHHHHHhcC--CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCC----C-----CC-CCcccHHHH
Confidence 44578999999999999988754 224566799999999999999999866321000 0 00 000000000
Q ss_pred HHHHHhhcccccc---cC---CCchHHHHHH----hCCCeEEEEEeCCCChh--HHHHHhcccCCCCCCcEEEEEeCChh
Q 037291 222 EMLSTILSEKLEV---AG---ANIPHFTKER----VWRMKVLIVLDDVNEVG--QLEGLIGELDQFGPGSRIVVTTRDKG 289 (349)
Q Consensus 222 ~ll~~~~~~~~~~---~~---~~~~~~~~~~----l~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IIiTtR~~~ 289 (349)
.+...-....... .+ +.+...+... ..++.-++|||+++... .++.|+..+.......++|+||++..
T Consensus 81 ~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~ 160 (830)
T PRK07003 81 EIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQ 160 (830)
T ss_pred HHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChh
Confidence 0000000000000 00 0111111111 12345688999998654 47777777765566778888887754
Q ss_pred H-HHh-cCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCc
Q 037291 290 V-LEK-FRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNP 345 (349)
Q Consensus 290 ~-~~~-~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~P 345 (349)
- ... .. ....+.+.+++.++..+.+.+.+-.++-. -..+....|++.++|..
T Consensus 161 KIp~TIrS--RCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~--id~eAL~lIA~~A~Gsm 214 (830)
T PRK07003 161 KIPVTVLS--RCLQFNLKQMPAGHIVSHLERILGEERIA--FEPQALRLLARAAQGSM 214 (830)
T ss_pred hccchhhh--heEEEecCCcCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCH
Confidence 3 222 22 45789999999999999998876433321 12345677888887753
No 24
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.94 E-value=3.4e-08 Score=92.13 Aligned_cols=184 Identities=15% Similarity=0.182 Sum_probs=108.2
Q ss_pred CCCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcc---eEEEE------------ec
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDG---SCFMS------------DV 206 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~---~~~~~------------~~ 206 (349)
....+++|-+.-++.+...+..+ .-...+.++|+.|+||||+|+.+++.+...... -|-.+ ++
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~~--~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~ 90 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSLG--RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDL 90 (363)
T ss_pred CchhhccChHHHHHHHHHHHHcC--CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 44567999999999998888754 234567899999999999999999876321100 00000 00
Q ss_pred cccccC-CCChHHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCChh--HHHHHhcccCCCCCCcEEEE
Q 037291 207 RRNSET-GGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEVG--QLEGLIGELDQFGPGSRIVV 283 (349)
Q Consensus 207 ~~~~~~-~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IIi 283 (349)
...... ...... .+.++..+.. ....+++-++|+|+++... .++.++..+.......++|+
T Consensus 91 ~~~~~~~~~~v~~-ir~i~~~~~~---------------~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl 154 (363)
T PRK14961 91 IEIDAASRTKVEE-MREILDNIYY---------------SPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFIL 154 (363)
T ss_pred EEecccccCCHHH-HHHHHHHHhc---------------CcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEE
Confidence 000000 011111 1111111100 0012345699999997654 46677777665556667777
Q ss_pred EeCCh-hHHHhcCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCcc
Q 037291 284 TTRDK-GVLEKFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNPL 346 (349)
Q Consensus 284 TtR~~-~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL 346 (349)
+|.+. .+...+.. ....+++.+++.++..+.+...+-..+... ..+.++.|++.++|.|-
T Consensus 155 ~t~~~~~l~~tI~S-Rc~~~~~~~l~~~el~~~L~~~~~~~g~~i--~~~al~~ia~~s~G~~R 215 (363)
T PRK14961 155 ATTDVEKIPKTILS-RCLQFKLKIISEEKIFNFLKYILIKESIDT--DEYALKLIAYHAHGSMR 215 (363)
T ss_pred EcCChHhhhHHHHh-hceEEeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHH
Confidence 76554 33332211 347899999999999998887664333111 12456778888888764
No 25
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.94 E-value=1.8e-08 Score=100.93 Aligned_cols=182 Identities=14% Similarity=0.150 Sum_probs=110.2
Q ss_pred CCCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcC-C-c-ceEEEEe------------c
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGE-F-D-GSCFMSD------------V 206 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~-f-~-~~~~~~~------------~ 206 (349)
.....+||-+..++.|..++..+ .-...+.++|+.|+||||+|+.+++.+... . . .-|..+. +
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~~--rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dv 90 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQQ--RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL 90 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhC--CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceE
Confidence 44568999999999998888754 123445899999999999999999876432 1 0 0011100 0
Q ss_pred cccccC-CCChHHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCCh--hHHHHHhcccCCCCCCcEEEE
Q 037291 207 RRNSET-GGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEV--GQLEGLIGELDQFGPGSRIVV 283 (349)
Q Consensus 207 ~~~~~~-~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIi 283 (349)
-++... ..+... .+.+...+. .....+++-++|||+++.. ...+.|+..+.......++|+
T Consensus 91 iEidAas~~kVDd-IReLie~v~---------------~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFIL 154 (944)
T PRK14949 91 IEVDAASRTKVDD-TRELLDNVQ---------------YRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLL 154 (944)
T ss_pred EEeccccccCHHH-HHHHHHHHH---------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEE
Confidence 000000 011111 122221110 0112356779999999744 567788777776556666666
Q ss_pred EeCCh-hHHHh-cCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCc
Q 037291 284 TTRDK-GVLEK-FRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNP 345 (349)
Q Consensus 284 TtR~~-~~~~~-~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~P 345 (349)
+|.+. .+... .. ....|++.+|+.++...++.+.+-...- .-..+.+..|++.++|.|
T Consensus 155 aTTe~~kLl~TIlS--RCq~f~fkpLs~eEI~~~L~~il~~EgI--~~edeAL~lIA~~S~Gd~ 214 (944)
T PRK14949 155 ATTDPQKLPVTVLS--RCLQFNLKSLTQDEIGTQLNHILTQEQL--PFEAEALTLLAKAANGSM 214 (944)
T ss_pred ECCCchhchHHHHH--hheEEeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCH
Confidence 65543 44322 22 3578999999999999988876633221 112345678888899876
No 26
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.94 E-value=2.1e-08 Score=92.03 Aligned_cols=182 Identities=16% Similarity=0.215 Sum_probs=105.6
Q ss_pred CCCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHH
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQK 221 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 221 (349)
.....++|++..++.+..++... ..+.+.|+|++|+||||+|+.+++.+........++. +. .+. ..+.. ...
T Consensus 14 ~~~~~~~g~~~~~~~l~~~i~~~---~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~-~~-~~~-~~~~~-~~~ 86 (319)
T PRK00440 14 RTLDEIVGQEEIVERLKSYVKEK---NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLE-LN-ASD-ERGID-VIR 86 (319)
T ss_pred CcHHHhcCcHHHHHHHHHHHhCC---CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEE-ec-ccc-ccchH-HHH
Confidence 34466899999999999888654 3455789999999999999999987643311111222 10 111 11111 111
Q ss_pred HHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCCh--hHHHHHhcccCCCCCCcEEEEEeCCh-hHHHhcCCCC
Q 037291 222 EMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEV--GQLEGLIGELDQFGPGSRIVVTTRDK-GVLEKFRGEE 298 (349)
Q Consensus 222 ~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTtR~~-~~~~~~~~~~ 298 (349)
..+..+....+ .....+-++++|+++.. .....+...+......+.+|+++... .+...+.. .
T Consensus 87 ~~i~~~~~~~~-------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~s-r 152 (319)
T PRK00440 87 NKIKEFARTAP-------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQS-R 152 (319)
T ss_pred HHHHHHHhcCC-------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHH-H
Confidence 11111111000 00123568999999754 23445555555445567777777433 22111110 2
Q ss_pred CcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCcc
Q 037291 299 KKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNPL 346 (349)
Q Consensus 299 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL 346 (349)
...+++.+++.++...++...+-..+... ..+.+..+++.++|.+-
T Consensus 153 ~~~~~~~~l~~~ei~~~l~~~~~~~~~~i--~~~al~~l~~~~~gd~r 198 (319)
T PRK00440 153 CAVFRFSPLKKEAVAERLRYIAENEGIEI--TDDALEAIYYVSEGDMR 198 (319)
T ss_pred hheeeeCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHH
Confidence 35789999999999998887764433211 23457788888888763
No 27
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=4.5e-08 Score=90.71 Aligned_cols=197 Identities=15% Similarity=0.156 Sum_probs=121.5
Q ss_pred CCCCCcccccchhhhHHHhhhhcCC-CCeeEEEEeccCccchHHHHHHHHHhhhcCCcc--eEEEEeccccccCCCChHH
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDLS-DTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDG--SCFMSDVRRNSETGGGLEH 218 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~~-~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~~ 218 (349)
..++.+.+|+.+++++...|..--. .....+.|+|.+|+|||+.++.+.+++...... .+++. +.. ..+..+
T Consensus 14 ~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yIN-c~~----~~t~~~ 88 (366)
T COG1474 14 YIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYIN-CLE----LRTPYQ 88 (366)
T ss_pred CCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEe-eee----CCCHHH
Confidence 4456699999999999988875422 234448899999999999999999988766433 35553 322 566788
Q ss_pred HHHHHHHHhhccccc-ccCCCchHHHHHHhC--CCeEEEEEeCCCChh-----HHHHHhcccCCCCCCcEEEEEeCChhH
Q 037291 219 LQKEMLSTILSEKLE-VAGANIPHFTKERVW--RMKVLIVLDDVNEVG-----QLEGLIGELDQFGPGSRIVVTTRDKGV 290 (349)
Q Consensus 219 l~~~ll~~~~~~~~~-~~~~~~~~~~~~~l~--~k~~LlVlDdv~~~~-----~~~~l~~~~~~~~~gs~IIiTtR~~~~ 290 (349)
++..++.++...... .........+.+.+. ++.+++|||+++... .+-.|...........-+|..+.+.++
T Consensus 89 i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~ 168 (366)
T COG1474 89 VLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKF 168 (366)
T ss_pred HHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHH
Confidence 888888887622221 122444466666664 578999999996442 233333332222122234455555544
Q ss_pred HHhcCC-----CCCcEEEcCCCCHHHHHHHHHhhh---cCCCCCCchHHHHHHHHHHHhcC
Q 037291 291 LEKFRG-----EEKKIHRVNGLEFEEAFEHFCNFA---FKENHCPTNLNWHSRRVVEYAKG 343 (349)
Q Consensus 291 ~~~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~a---~~~~~~~~~~~~~~~~i~~~~~G 343 (349)
...+.+ .....+..+|-+.+|-..++..++ |......++-.+++..++...+|
T Consensus 169 ~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G 229 (366)
T COG1474 169 LDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG 229 (366)
T ss_pred HHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc
Confidence 333321 012337788999999999988765 44444444444444444444443
No 28
>PF13173 AAA_14: AAA domain
Probab=98.93 E-value=1.2e-08 Score=80.70 Aligned_cols=121 Identities=19% Similarity=0.220 Sum_probs=78.2
Q ss_pred eEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHHHhCC
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERVWR 249 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~ 249 (349)
+++.|.|+.|+|||||++++++... .....+|+. ... ......... + +...+.+....
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~----~~~----~~~~~~~~~------------~-~~~~~~~~~~~ 60 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL-PPENILYIN----FDD----PRDRRLADP------------D-LLEYFLELIKP 60 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc-ccccceeec----cCC----HHHHHHhhh------------h-hHHHHHHhhcc
Confidence 6789999999999999999998765 223455554 111 111000000 0 11334444444
Q ss_pred CeEEEEEeCCCChhHHHHHhcccCCCCCCcEEEEEeCChhHHHhc----CCCCCcEEEcCCCCHHHH
Q 037291 250 MKVLIVLDDVNEVGQLEGLIGELDQFGPGSRIVVTTRDKGVLEKF----RGEEKKIHRVNGLEFEEA 312 (349)
Q Consensus 250 k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IIiTtR~~~~~~~~----~~~~~~~~~l~~L~~~ea 312 (349)
++.+++||++.....|...+..+...++..+|++|+.+...+..- -......+++.||+..|-
T Consensus 61 ~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 788999999988877777766665555678999999887665331 111346789999998773
No 29
>PRK08727 hypothetical protein; Validated
Probab=98.91 E-value=2.5e-08 Score=87.20 Aligned_cols=143 Identities=13% Similarity=0.072 Sum_probs=84.4
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHHHhC
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERVW 248 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~ 248 (349)
...+.|+|++|+|||+|+..+++..........|+. .. +....+. ..+. .+
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~----~~-------~~~~~~~----------------~~~~-~l- 91 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP----LQ-------AAAGRLR----------------DALE-AL- 91 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe----HH-------HhhhhHH----------------HHHH-HH-
Confidence 355899999999999999999998766544556665 11 1111110 1111 11
Q ss_pred CCeEEEEEeCCCCh----hHHHHHhcccCC-CCCCcEEEEEeCChh---------HHHhcCCCCCcEEEcCCCCHHHHHH
Q 037291 249 RMKVLIVLDDVNEV----GQLEGLIGELDQ-FGPGSRIVVTTRDKG---------VLEKFRGEEKKIHRVNGLEFEEAFE 314 (349)
Q Consensus 249 ~k~~LlVlDdv~~~----~~~~~l~~~~~~-~~~gs~IIiTtR~~~---------~~~~~~~~~~~~~~l~~L~~~ea~~ 314 (349)
.+.-+|||||++.. ..-..+...+.. ...+..+|+|++... +...+. ....+++++++.++-.+
T Consensus 92 ~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~--~~~~~~l~~~~~e~~~~ 169 (233)
T PRK08727 92 EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLA--QCIRIGLPVLDDVARAA 169 (233)
T ss_pred hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHh--cCceEEecCCCHHHHHH
Confidence 12348999999632 111233333222 134567999987532 222222 35689999999999999
Q ss_pred HHHhhhcCCCCCCchHHHHHHHHHHHhcCC
Q 037291 315 HFCNFAFKENHCPTNLNWHSRRVVEYAKGN 344 (349)
Q Consensus 315 Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~ 344 (349)
++.+++....-.. ..+...-+++.++|-
T Consensus 170 iL~~~a~~~~l~l--~~e~~~~La~~~~rd 197 (233)
T PRK08727 170 VLRERAQRRGLAL--DEAAIDWLLTHGERE 197 (233)
T ss_pred HHHHHHHHcCCCC--CHHHHHHHHHhCCCC
Confidence 9998775432211 124456666666653
No 30
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.91 E-value=1.9e-08 Score=94.05 Aligned_cols=176 Identities=21% Similarity=0.299 Sum_probs=99.5
Q ss_pred CCCCcccccchhhhHHHhhhhcC----------CCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccC
Q 037291 143 SSNGLVGLNSRIEQIKPFLCMDL----------SDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSET 212 (349)
Q Consensus 143 ~~~~~vGr~~~~~~l~~~L~~~~----------~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 212 (349)
....+.|++..++++.+.+.... -...+-+.|+|++|+|||+||+.+++.....|- . ..
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~-----~----v~-- 188 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFI-----R----VV-- 188 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEE-----e----cc--
Confidence 34568999999999988764320 022456889999999999999999998754432 1 10
Q ss_pred CCChHHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCChh----------------HHHHHhcccCCC-
Q 037291 213 GGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEVG----------------QLEGLIGELDQF- 275 (349)
Q Consensus 213 ~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~~----------------~~~~l~~~~~~~- 275 (349)
...+..... +... ..+...+...-...+.+|+||+++... .+..++..+..+
T Consensus 189 ---~~~l~~~~~----g~~~----~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~ 257 (364)
T TIGR01242 189 ---GSELVRKYI----GEGA----RLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD 257 (364)
T ss_pred ---hHHHHHHhh----hHHH----HHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC
Confidence 011111111 1000 001011122223457899999996431 123333333222
Q ss_pred -CCCcEEEEEeCChhHHHhc--C-CCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCC-chHHHHHHHHHHHhcCC
Q 037291 276 -GPGSRIVVTTRDKGVLEKF--R-GEEKKIHRVNGLEFEEAFEHFCNFAFKENHCP-TNLNWHSRRVVEYAKGN 344 (349)
Q Consensus 276 -~~gs~IIiTtR~~~~~~~~--~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~G~ 344 (349)
..+..||.||.....+... . ......++++..+.++..++|..++.+..... .. ...+++.+.|.
T Consensus 258 ~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~ 327 (364)
T TIGR01242 258 PRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGA 327 (364)
T ss_pred CCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCC
Confidence 2456788888755432211 1 11356799999999999999998875433221 12 34555666554
No 31
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.89 E-value=9.3e-09 Score=105.22 Aligned_cols=197 Identities=17% Similarity=0.139 Sum_probs=112.0
Q ss_pred cccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCC---cceEEEEeccccccCCCChHHHHHHH
Q 037291 147 LVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEF---DGSCFMSDVRRNSETGGGLEHLQKEM 223 (349)
Q Consensus 147 ~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f---~~~~~~~~~~~~~~~~~~~~~l~~~l 223 (349)
++||+.+++.|...+..-..+...++.+.|.+|||||+|++++...+...+ -..+|-.-.+ ... -..+.+..+++
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~-~ip-l~~lvq~~r~l 79 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFER-NIP-LSPLVQAFRDL 79 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccC-CCc-hHHHHHHHHHH
Confidence 789999999999999887566788999999999999999999999776552 1112221000 111 12223333344
Q ss_pred HHHhhcc------------------------------------cccc---cC---C-----CchHHHHHHh-CCCeEEEE
Q 037291 224 LSTILSE------------------------------------KLEV---AG---A-----NIPHFTKERV-WRMKVLIV 255 (349)
Q Consensus 224 l~~~~~~------------------------------------~~~~---~~---~-----~~~~~~~~~l-~~k~~LlV 255 (349)
..++... ..+. .. . .....+.... +.++.++|
T Consensus 80 ~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~ 159 (849)
T COG3899 80 MGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIV 159 (849)
T ss_pred HHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEE
Confidence 3333110 0000 00 0 0111112222 45699999
Q ss_pred EeCC-C-ChhHHHHHhcccCCCC----CCcEEE--EEeCChhHHHhcCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCC
Q 037291 256 LDDV-N-EVGQLEGLIGELDQFG----PGSRIV--VTTRDKGVLEKFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCP 327 (349)
Q Consensus 256 lDdv-~-~~~~~~~l~~~~~~~~----~gs~II--iTtR~~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 327 (349)
+||+ | |...++-+........ .-+.+. .|.+...-....+......+.+.||+..+..+|...........+
T Consensus 160 leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~~~ 239 (849)
T COG3899 160 LEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKLLP 239 (849)
T ss_pred EecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCccccc
Confidence 9999 4 3333333222221111 011222 233322111111222568999999999999999987763322222
Q ss_pred chHHHHHHHHHHHhcCCcccc
Q 037291 328 TNLNWHSRRVVEYAKGNPLVL 348 (349)
Q Consensus 328 ~~~~~~~~~i~~~~~G~PLal 348 (349)
.+....|++++.|+|+.+
T Consensus 240 ---~p~~~~i~~kt~GnPfFi 257 (849)
T COG3899 240 ---APLLELIFEKTKGNPFFI 257 (849)
T ss_pred ---chHHHHHHHHhcCCCccH
Confidence 245889999999999976
No 32
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.89 E-value=4e-08 Score=94.86 Aligned_cols=182 Identities=15% Similarity=0.102 Sum_probs=109.1
Q ss_pred CCCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhc--CCcceEEEEec------------c
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTG--EFDGSCFMSDV------------R 207 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~--~f~~~~~~~~~------------~ 207 (349)
...+.++|-+.-++.|..++... .-...+.++|++|+||||+|+.+++.+.. .+...|+.+.. .
T Consensus 11 ~~~~dvvGq~~v~~~L~~~i~~~--~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~ 88 (504)
T PRK14963 11 ITFDEVVGQEHVKEVLLAALRQG--RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVL 88 (504)
T ss_pred CCHHHhcChHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceE
Confidence 34467899998888888888765 23455689999999999999999987642 12223333210 0
Q ss_pred cccc-CCCChHHHHHHHHHHhhcccccccCCCchHHHHH-HhCCCeEEEEEeCCCCh--hHHHHHhcccCCCCCCcEEEE
Q 037291 208 RNSE-TGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKE-RVWRMKVLIVLDDVNEV--GQLEGLIGELDQFGPGSRIVV 283 (349)
Q Consensus 208 ~~~~-~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~-~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIi 283 (349)
.... ...+... .+++.. .+.. -+.+++-++|||+++.. ..++.++..+......+.+|+
T Consensus 89 el~~~~~~~vd~-iR~l~~----------------~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il 151 (504)
T PRK14963 89 EIDAASNNSVED-VRDLRE----------------KVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFIL 151 (504)
T ss_pred EecccccCCHHH-HHHHHH----------------HHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEE
Confidence 0000 0011111 111111 0110 12245668999999754 457777777765555666666
Q ss_pred EeCCh-hHHHhcCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCc
Q 037291 284 TTRDK-GVLEKFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNP 345 (349)
Q Consensus 284 TtR~~-~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~P 345 (349)
+|... .+...+.. ....+++.+++.++..+.+.+.+-..+-.. ..+.+..|++.++|.+
T Consensus 152 ~t~~~~kl~~~I~S-Rc~~~~f~~ls~~el~~~L~~i~~~egi~i--~~~Al~~ia~~s~Gdl 211 (504)
T PRK14963 152 ATTEPEKMPPTILS-RTQHFRFRRLTEEEIAGKLRRLLEAEGREA--EPEALQLVARLADGAM 211 (504)
T ss_pred EcCChhhCChHHhc-ceEEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCH
Confidence 66543 33222211 356899999999999999988774433221 2245778888888876
No 33
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.89 E-value=4.8e-08 Score=95.24 Aligned_cols=177 Identities=18% Similarity=0.163 Sum_probs=108.5
Q ss_pred CCCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCc---------------------ce
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFD---------------------GS 200 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~---------------------~~ 200 (349)
.....+||.+...+.|..++..+ .-...+.++|+.|+||||+|+.+++.+..... ..
T Consensus 12 ktFddVIGQe~vv~~L~~aI~~g--rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDv 89 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALERG--RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDL 89 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCce
Confidence 44567999999999999988755 22467789999999999999999987532110 00
Q ss_pred EEEEeccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCCh--hHHHHHhcccCCCCCC
Q 037291 201 CFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEV--GQLEGLIGELDQFGPG 278 (349)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~g 278 (349)
..+. ... ..+..+ .+.++.... ..-..++.-++|+|+++.. ...+.++..+.....+
T Consensus 90 iEID----AAs-~~~Vdd-IReli~~~~---------------y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~ 148 (702)
T PRK14960 90 IEID----AAS-RTKVED-TRELLDNVP---------------YAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEH 148 (702)
T ss_pred EEec----ccc-cCCHHH-HHHHHHHHh---------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCC
Confidence 1110 000 011111 111111100 0011345678999999754 4567777776655566
Q ss_pred cEEEEEeCChh-HHHh-cCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCc
Q 037291 279 SRIVVTTRDKG-VLEK-FRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNP 345 (349)
Q Consensus 279 s~IIiTtR~~~-~~~~-~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~P 345 (349)
..+|++|.+.. +... .. ....+++.+|+.++..+.+.+.+-..+-. -..+....|++.++|.+
T Consensus 149 v~FILaTtd~~kIp~TIlS--RCq~feFkpLs~eEI~k~L~~Il~kEgI~--id~eAL~~IA~~S~GdL 213 (702)
T PRK14960 149 VKFLFATTDPQKLPITVIS--RCLQFTLRPLAVDEITKHLGAILEKEQIA--ADQDAIWQIAESAQGSL 213 (702)
T ss_pred cEEEEEECChHhhhHHHHH--hhheeeccCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCH
Confidence 77887776643 2212 22 45789999999999999888776443321 12244677888888865
No 34
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.88 E-value=5.8e-09 Score=87.72 Aligned_cols=51 Identities=27% Similarity=0.421 Sum_probs=36.3
Q ss_pred CcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcC
Q 037291 146 GLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGE 196 (349)
Q Consensus 146 ~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 196 (349)
.|+||+.+++++...|....+...+.+.|+|++|+|||+|.++++.++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 489999999999999964434567999999999999999999999987665
No 35
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.88 E-value=3.1e-08 Score=96.33 Aligned_cols=194 Identities=13% Similarity=0.125 Sum_probs=108.7
Q ss_pred CCCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCC-cceEEEEeccccccCCCChHHHH
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEF-DGSCFMSDVRRNSETGGGLEHLQ 220 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~l~ 220 (349)
....++||-+.-++.|..++..+ .-...+.++|+.|+||||+|+.+++.+...- +..--+ ... .++.-...
T Consensus 13 qtFddVIGQe~vv~~L~~al~~g--RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~-----~~~-PCG~C~sC 84 (700)
T PRK12323 13 RDFTTLVGQEHVVRALTHALEQQ--RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGI-----TAQ-PCGQCRAC 84 (700)
T ss_pred CcHHHHcCcHHHHHHHHHHHHhC--CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccC-----CCC-CCcccHHH
Confidence 44567999999999999988765 2245668999999999999999998763210 000000 000 00000000
Q ss_pred HHHHHHhhcccccc---cC---CCchHHHHH----HhCCCeEEEEEeCCCCh--hHHHHHhcccCCCCCCcEEEEEeCCh
Q 037291 221 KEMLSTILSEKLEV---AG---ANIPHFTKE----RVWRMKVLIVLDDVNEV--GQLEGLIGELDQFGPGSRIVVTTRDK 288 (349)
Q Consensus 221 ~~ll~~~~~~~~~~---~~---~~~~~~~~~----~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTtR~~ 288 (349)
..+...-....... .+ +.+.+.+.. -..++.-++|||+++.. ...+.|+..+........+|++|.+.
T Consensus 85 ~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep 164 (700)
T PRK12323 85 TEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDP 164 (700)
T ss_pred HHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCCh
Confidence 00000000000000 00 111111111 11345678999999754 46778887776555566666555544
Q ss_pred -hHHHhcCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCcc
Q 037291 289 -GVLEKFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNPL 346 (349)
Q Consensus 289 -~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL 346 (349)
.++..+.. ....+.+..++.++..+.+.+.+..++... ..+..+.|++.++|.|.
T Consensus 165 ~kLlpTIrS-RCq~f~f~~ls~eei~~~L~~Il~~Egi~~--d~eAL~~IA~~A~Gs~R 220 (700)
T PRK12323 165 QKIPVTVLS-RCLQFNLKQMPPGHIVSHLDAILGEEGIAH--EVNALRLLAQAAQGSMR 220 (700)
T ss_pred HhhhhHHHH-HHHhcccCCCChHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHH
Confidence 44322210 346899999999999998887664332211 12445778889999874
No 36
>PRK04195 replication factor C large subunit; Provisional
Probab=98.87 E-value=2.3e-08 Score=96.82 Aligned_cols=176 Identities=16% Similarity=0.214 Sum_probs=104.3
Q ss_pred CCCCCcccccchhhhHHHhhhhcC-CCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHH
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDL-SDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQ 220 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~-~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 220 (349)
.....++|.+..++.+..|+..-. ....+.+.|+|++|+||||+|+.+++.+. |+. +.+. .+. ... ....
T Consensus 11 ~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~--~~~-ieln----asd-~r~-~~~i 81 (482)
T PRK04195 11 KTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG--WEV-IELN----ASD-QRT-ADVI 81 (482)
T ss_pred CCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CCE-EEEc----ccc-ccc-HHHH
Confidence 445679999999999999987531 12267899999999999999999999863 221 1121 111 111 1222
Q ss_pred HHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCChh------HHHHHhcccCCCCCCcEEEEEeCChh-HHH-
Q 037291 221 KEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEVG------QLEGLIGELDQFGPGSRIVVTTRDKG-VLE- 292 (349)
Q Consensus 221 ~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~~------~~~~l~~~~~~~~~gs~IIiTtR~~~-~~~- 292 (349)
..++....... ..+..++-+||||+++... .+..+...+. ..+..||+|+.+.. ...
T Consensus 82 ~~~i~~~~~~~-------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k 146 (482)
T PRK04195 82 ERVAGEAATSG-------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLR 146 (482)
T ss_pred HHHHHHhhccC-------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchh
Confidence 22222211100 0011357799999997542 2455554444 23345666665432 111
Q ss_pred hcCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCC
Q 037291 293 KFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGN 344 (349)
Q Consensus 293 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~ 344 (349)
.+. .....+++.+++.++....+...+...+-..+ .+....|++.++|.
T Consensus 147 ~Lr-sr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~--~eaL~~Ia~~s~GD 195 (482)
T PRK04195 147 ELR-NACLMIEFKRLSTRSIVPVLKRICRKEGIECD--DEALKEIAERSGGD 195 (482)
T ss_pred hHh-ccceEEEecCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCC
Confidence 111 14568999999999999888877644332211 24567777777774
No 37
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.86 E-value=7.8e-08 Score=95.58 Aligned_cols=175 Identities=15% Similarity=0.055 Sum_probs=100.2
Q ss_pred CCCCCcccccchhhhHHHhhhhcC--CCCeeEEEEeccCccchHHHHHHHHHhhhcC-----Cc-c-eEEEEeccccccC
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDL--SDTVQIVGIWGMGGIGKTTLAEAIFDQFTGE-----FD-G-SCFMSDVRRNSET 212 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~--~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~-----f~-~-~~~~~~~~~~~~~ 212 (349)
..++.+.||+.|+++|...|...- +....++.|+|++|.|||++++.+.+++... .. . .+++. ...
T Consensus 752 YVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYIN-Cm~---- 826 (1164)
T PTZ00112 752 VVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEIN-GMN---- 826 (1164)
T ss_pred cCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEe-CCc----
Confidence 556889999999999999987531 2334567899999999999999999876422 22 1 23332 222
Q ss_pred CCChHHHHHHHHHHhhcccccccC--CCchHHHHHHhC---CCeEEEEEeCCCChh--HHHHHhcccCCC-CCCcEEEE-
Q 037291 213 GGGLEHLQKEMLSTILSEKLEVAG--ANIPHFTKERVW---RMKVLIVLDDVNEVG--QLEGLIGELDQF-GPGSRIVV- 283 (349)
Q Consensus 213 ~~~~~~l~~~ll~~~~~~~~~~~~--~~~~~~~~~~l~---~k~~LlVlDdv~~~~--~~~~l~~~~~~~-~~gs~IIi- 283 (349)
......++..+..++....+...- ......+...+. ....+||||+++... .-+.|...+.+. ..+++|++
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLI 906 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLI 906 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEE
Confidence 234566677777776443322111 112233333331 224689999997442 112222222221 23444443
Q ss_pred -EeCChhHHH----hcC-CCCCcEEEcCCCCHHHHHHHHHhhhc
Q 037291 284 -TTRDKGVLE----KFR-GEEKKIHRVNGLEFEEAFEHFCNFAF 321 (349)
Q Consensus 284 -TtR~~~~~~----~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~ 321 (349)
+|.+..+.. .+. ......+..+|++.+|..+++..++-
T Consensus 907 GISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe 950 (1164)
T PTZ00112 907 AISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLE 950 (1164)
T ss_pred EecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHH
Confidence 443322211 111 00123467799999999999998874
No 38
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.85 E-value=8.2e-08 Score=85.99 Aligned_cols=147 Identities=16% Similarity=0.292 Sum_probs=91.7
Q ss_pred CCCCcccccchhhh---HHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHH
Q 037291 143 SSNGLVGLNSRIEQ---IKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHL 219 (349)
Q Consensus 143 ~~~~~vGr~~~~~~---l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 219 (349)
..+..||.+..+.+ |..++. ++..+.+.+||++|+||||||+.++..-+.+- ..|+. .+.++.+..+
T Consensus 136 tL~dyvGQ~hlv~q~gllrs~ie---q~~ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfve----lSAt~a~t~d- 205 (554)
T KOG2028|consen 136 TLDDYVGQSHLVGQDGLLRSLIE---QNRIPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVE----LSATNAKTND- 205 (554)
T ss_pred hHHHhcchhhhcCcchHHHHHHH---cCCCCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEE----EeccccchHH-
Confidence 33455665554433 223333 45788899999999999999999998654432 34554 3322222222
Q ss_pred HHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCC--ChhHHHHHhcccCCCCCCcEEEE--EeCChhH---HH
Q 037291 220 QKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVN--EVGQLEGLIGELDQFGPGSRIVV--TTRDKGV---LE 292 (349)
Q Consensus 220 ~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IIi--TtR~~~~---~~ 292 (349)
.+.++.+ ..-...+..+|.+|++|+|. +..|-+.+++.. .+|+.++| ||.++.. ..
T Consensus 206 vR~ife~--------------aq~~~~l~krkTilFiDEiHRFNksQQD~fLP~V---E~G~I~lIGATTENPSFqln~a 268 (554)
T KOG2028|consen 206 VRDIFEQ--------------AQNEKSLTKRKTILFIDEIHRFNKSQQDTFLPHV---ENGDITLIGATTENPSFQLNAA 268 (554)
T ss_pred HHHHHHH--------------HHHHHhhhcceeEEEeHHhhhhhhhhhhccccee---ccCceEEEecccCCCccchhHH
Confidence 2333333 22234467789999999994 555556665554 45765554 7777643 11
Q ss_pred hcCCCCCcEEEcCCCCHHHHHHHHHh
Q 037291 293 KFRGEEKKIHRVNGLEFEEAFEHFCN 318 (349)
Q Consensus 293 ~~~~~~~~~~~l~~L~~~ea~~Lf~~ 318 (349)
.+. ...++-+++|+.++...++.+
T Consensus 269 LlS--RC~VfvLekL~~n~v~~iL~r 292 (554)
T KOG2028|consen 269 LLS--RCRVFVLEKLPVNAVVTILMR 292 (554)
T ss_pred HHh--ccceeEeccCCHHHHHHHHHH
Confidence 122 456899999999999888876
No 39
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.85 E-value=1.1e-07 Score=90.99 Aligned_cols=177 Identities=14% Similarity=0.139 Sum_probs=102.5
Q ss_pred CCCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcC----Cc-----------------ce
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGE----FD-----------------GS 200 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~----f~-----------------~~ 200 (349)
.....++|.+...+.|...+..+ .-.+.+.++|++|+||||+|+.+++.+... +. ..
T Consensus 11 ~~~~divGq~~i~~~L~~~i~~~--~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 11 KTFSEVVGQDHVKKLIINALKKN--SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred CCHHHccCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 44567999988878787777654 223557899999999999999999865321 00 01
Q ss_pred EEEEeccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCCh--hHHHHHhcccCCCCCC
Q 037291 201 CFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEV--GQLEGLIGELDQFGPG 278 (349)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~g 278 (349)
..+. .+. ..+...+ +.+...... ....+++-++|+|+++.. ...+.++..+......
T Consensus 89 ~el~----aa~-~~gid~i-R~i~~~~~~---------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~ 147 (472)
T PRK14962 89 IELD----AAS-NRGIDEI-RKIRDAVGY---------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSH 147 (472)
T ss_pred EEEe----Ccc-cCCHHHH-HHHHHHHhh---------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCc
Confidence 1111 000 1112111 111111100 012345679999999754 3456666666554445
Q ss_pred cEEEEEeCC-hhHHHhcCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCC
Q 037291 279 SRIVVTTRD-KGVLEKFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGN 344 (349)
Q Consensus 279 s~IIiTtR~-~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~ 344 (349)
..+|++|.+ ..+...+.. ....+++.+++.++....+...+...+-.. ..+....|++.++|-
T Consensus 148 vv~Ilattn~~kl~~~L~S-R~~vv~f~~l~~~el~~~L~~i~~~egi~i--~~eal~~Ia~~s~Gd 211 (472)
T PRK14962 148 VVFVLATTNLEKVPPTIIS-RCQVIEFRNISDELIIKRLQEVAEAEGIEI--DREALSFIAKRASGG 211 (472)
T ss_pred EEEEEEeCChHhhhHHHhc-CcEEEEECCccHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHhCCC
Confidence 555555544 333332221 456899999999999988887764332111 124567777777664
No 40
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.83 E-value=1.8e-07 Score=86.85 Aligned_cols=195 Identities=14% Similarity=0.084 Sum_probs=111.3
Q ss_pred CCCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCC--cceEEEEeccccccCCCChHHH
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEF--DGSCFMSDVRRNSETGGGLEHL 219 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~l 219 (349)
.....++|.+...+.+...+..+ .-...+.++|+.|+||+|+|..+++.+-.+- ............. ..+--..
T Consensus 16 ~~~~~iiGq~~~~~~L~~~~~~~--rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~--~~~~c~~ 91 (365)
T PRK07471 16 RETTALFGHAAAEAALLDAYRSG--RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLA--IDPDHPV 91 (365)
T ss_pred CchhhccChHHHHHHHHHHHHcC--CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccccc--CCCCChH
Confidence 55678999999989898888765 2245688999999999999999998753211 0000000000000 0000001
Q ss_pred HHHHHHHhhcccc-------cc----cCCCchHHHHH---Hh-----CCCeEEEEEeCCCC--hhHHHHHhcccCCCCCC
Q 037291 220 QKEMLSTILSEKL-------EV----AGANIPHFTKE---RV-----WRMKVLIVLDDVNE--VGQLEGLIGELDQFGPG 278 (349)
Q Consensus 220 ~~~ll~~~~~~~~-------~~----~~~~~~~~~~~---~l-----~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~g 278 (349)
.+.+.......-. .. ......+.+++ .+ .+++-++|+|+++. ....+.++..+.....+
T Consensus 92 c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~ 171 (365)
T PRK07471 92 ARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPAR 171 (365)
T ss_pred HHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCC
Confidence 1111111100000 00 00111233332 22 24567999999964 45667777777655566
Q ss_pred cEEEEEeCChh-HHHhcCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCccc
Q 037291 279 SRIVVTTRDKG-VLEKFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNPLV 347 (349)
Q Consensus 279 s~IIiTtR~~~-~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLa 347 (349)
+.+|++|.+.. ++.... .....+.+.+++.++..+++...... ... .....++..++|.|+.
T Consensus 172 ~~~IL~t~~~~~llpti~-SRc~~i~l~~l~~~~i~~~L~~~~~~---~~~---~~~~~l~~~s~Gsp~~ 234 (365)
T PRK07471 172 SLFLLVSHAPARLLPTIR-SRCRKLRLRPLAPEDVIDALAAAGPD---LPD---DPRAALAALAEGSVGR 234 (365)
T ss_pred eEEEEEECCchhchHHhh-ccceEEECCCCCHHHHHHHHHHhccc---CCH---HHHHHHHHHcCCCHHH
Confidence 77777776654 333222 15679999999999999999876411 111 1226789999999973
No 41
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.82 E-value=3.2e-07 Score=77.58 Aligned_cols=90 Identities=13% Similarity=0.237 Sum_probs=63.1
Q ss_pred CCeEEEEEeCCCCh--hHHHHHhcccCCCCCCcEEEEEeCCh-hHHHhcCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCC
Q 037291 249 RMKVLIVLDDVNEV--GQLEGLIGELDQFGPGSRIVVTTRDK-GVLEKFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENH 325 (349)
Q Consensus 249 ~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTtR~~-~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 325 (349)
+.+-++|+||++.. ...+.++..+....+.+.+|++|++. .+...+.. ....+++.+++.++..+.+.+..
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~s-r~~~~~~~~~~~~~~~~~l~~~g----- 168 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRS-RCQVLPFPPLSEEALLQWLIRQG----- 168 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHh-hcEEeeCCCCCHHHHHHHHHHcC-----
Confidence 45678999999754 34666777776656667777777654 22222211 34689999999999999888761
Q ss_pred CCchHHHHHHHHHHHhcCCccc
Q 037291 326 CPTNLNWHSRRVVEYAKGNPLV 347 (349)
Q Consensus 326 ~~~~~~~~~~~i~~~~~G~PLa 347 (349)
.. .+.+..+++.++|.|..
T Consensus 169 i~---~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 169 IS---EEAAELLLALAGGSPGA 187 (188)
T ss_pred CC---HHHHHHHHHHcCCCccc
Confidence 11 24588999999999864
No 42
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.82 E-value=4.4e-08 Score=78.53 Aligned_cols=123 Identities=18% Similarity=0.213 Sum_probs=68.3
Q ss_pred ccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHHHh
Q 037291 148 VGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTI 227 (349)
Q Consensus 148 vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~ 227 (349)
+|++..+..+...+... ..+.+.|+|++|+|||+|++.+++.+...-....++. ...... ....... ....
T Consensus 1 ~~~~~~~~~i~~~~~~~---~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~-~~~~~~----~~~~~~~-~~~~ 71 (151)
T cd00009 1 VGQEEAIEALREALELP---PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLN-ASDLLE----GLVVAEL-FGHF 71 (151)
T ss_pred CchHHHHHHHHHHHhCC---CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEe-hhhhhh----hhHHHHH-hhhh
Confidence 36777888888877653 4467889999999999999999998753333334443 211111 0000000 0000
Q ss_pred hcccccccCCCchHHHHHHhCCCeEEEEEeCCCCh--hH---HHHHhcccCCC---CCCcEEEEEeCChh
Q 037291 228 LSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEV--GQ---LEGLIGELDQF---GPGSRIVVTTRDKG 289 (349)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~--~~---~~~l~~~~~~~---~~gs~IIiTtR~~~ 289 (349)
............++.++|+||++.. .. +..++...... ..+..+|+||.+..
T Consensus 72 ----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0001112223456789999999854 22 22323332221 35678888887543
No 43
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.80 E-value=2e-07 Score=90.46 Aligned_cols=177 Identities=16% Similarity=0.135 Sum_probs=105.7
Q ss_pred CCCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCC---------------------cce
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEF---------------------DGS 200 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f---------------------~~~ 200 (349)
.....++|-+..++.|...+... .-...+.++|+.|+||||+|+.+++.+.... ...
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~~--rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALETQ--KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 44567899999999998888654 2345578999999999999999998653211 111
Q ss_pred EEEEeccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCCh--hHHHHHhcccCCCCCC
Q 037291 201 CFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEV--GQLEGLIGELDQFGPG 278 (349)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~g 278 (349)
..+. ... ..+..+ .+.++..+. ..-..+++-++|+|+++.. ...+.|+..+......
T Consensus 91 ieid----aas-~~gvd~-ir~ii~~~~---------------~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~ 149 (546)
T PRK14957 91 IEID----AAS-RTGVEE-TKEILDNIQ---------------YMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEY 149 (546)
T ss_pred EEee----ccc-ccCHHH-HHHHHHHHH---------------hhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCC
Confidence 1111 000 111111 111111110 0112355679999999744 4577777777765556
Q ss_pred cEEEEEeCCh-hHHHh-cCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCc
Q 037291 279 SRIVVTTRDK-GVLEK-FRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNP 345 (349)
Q Consensus 279 s~IIiTtR~~-~~~~~-~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~P 345 (349)
+.+|++|.+. .+... .. ....+++.+++.++..+.+.+.+-..+-. -.......|++.++|.+
T Consensus 150 v~fIL~Ttd~~kil~tI~S--Rc~~~~f~~Ls~~eI~~~L~~il~~egi~--~e~~Al~~Ia~~s~Gdl 214 (546)
T PRK14957 150 VKFILATTDYHKIPVTILS--RCIQLHLKHISQADIKDQLKIILAKENIN--SDEQSLEYIAYHAKGSL 214 (546)
T ss_pred ceEEEEECChhhhhhhHHH--heeeEEeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCH
Confidence 6666555443 34322 22 45789999999999888887755332211 12234567777777754
No 44
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.80 E-value=5.2e-08 Score=84.96 Aligned_cols=166 Identities=12% Similarity=0.149 Sum_probs=90.5
Q ss_pred CCCcc-cccchh-hhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHH
Q 037291 144 SNGLV-GLNSRI-EQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQK 221 (349)
Q Consensus 144 ~~~~v-Gr~~~~-~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 221 (349)
.++|+ |..... ..+..+.. . ....+.+.|+|++|+|||+||+.+++.....-....++. ... .. .
T Consensus 17 ~d~f~~~~~~~~~~~l~~~~~-~-~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~----~~~----~~---~ 83 (227)
T PRK08903 17 FDNFVAGENAELVARLRELAA-G-PVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLD----AAS----PL---L 83 (227)
T ss_pred hcccccCCcHHHHHHHHHHHh-c-cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe----hHH----hH---H
Confidence 34455 554443 33333333 1 234567889999999999999999987643322344443 110 00 0
Q ss_pred HHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCCh--hHHHHHhcccCCC-CCCc-EEEEEeCChhHH------
Q 037291 222 EMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEV--GQLEGLIGELDQF-GPGS-RIVVTTRDKGVL------ 291 (349)
Q Consensus 222 ~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~-~~gs-~IIiTtR~~~~~------ 291 (349)
.+ .. ....-+||+||++.. .....+...+... ..+. .+|+|++.....
T Consensus 84 ~~---------------------~~-~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~ 141 (227)
T PRK08903 84 AF---------------------DF-DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLRED 141 (227)
T ss_pred HH---------------------hh-cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHH
Confidence 00 00 112347889999643 2333343333221 2333 366666643211
Q ss_pred --HhcCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCcccc
Q 037291 292 --EKFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNPLVL 348 (349)
Q Consensus 292 --~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal 348 (349)
..+. ....+++++|+.++-..++...+-...-. -..+..+.+++.+.|++..|
T Consensus 142 L~sr~~--~~~~i~l~pl~~~~~~~~l~~~~~~~~v~--l~~~al~~L~~~~~gn~~~l 196 (227)
T PRK08903 142 LRTRLG--WGLVYELKPLSDADKIAALKAAAAERGLQ--LADEVPDYLLTHFRRDMPSL 196 (227)
T ss_pred HHHHHh--cCeEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhccCCHHHH
Confidence 1221 24689999999988777776644222211 12356777888888888654
No 45
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.80 E-value=2.1e-07 Score=89.60 Aligned_cols=183 Identities=16% Similarity=0.188 Sum_probs=107.3
Q ss_pred CCCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCc-------ceEEEE----------
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFD-------GSCFMS---------- 204 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~-------~~~~~~---------- 204 (349)
.....++|-+.-+..|...+..+ .-.+.+.++|+.|+||||+|+.+++.+-.... ..|..+
T Consensus 18 ~~f~dliGq~~vv~~L~~ai~~~--ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~ 95 (507)
T PRK06645 18 SNFAELQGQEVLVKVLSYTILND--RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHN 95 (507)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC--CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCC
Confidence 44567899999888888777654 23467889999999999999999987632110 001110
Q ss_pred --ecccccc-CCCChHHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCCh--hHHHHHhcccCCCCCCc
Q 037291 205 --DVRRNSE-TGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEV--GQLEGLIGELDQFGPGS 279 (349)
Q Consensus 205 --~~~~~~~-~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs 279 (349)
++.+... ...+..++ +.++.... ..-+.+++-++|+|+++.. ..++.+...+....+.+
T Consensus 96 h~Dv~eidaas~~~vd~I-r~iie~a~---------------~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~ 159 (507)
T PRK06645 96 HPDIIEIDAASKTSVDDI-RRIIESAE---------------YKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHI 159 (507)
T ss_pred CCcEEEeeccCCCCHHHH-HHHHHHHH---------------hccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCE
Confidence 0000000 01111111 11111100 0012345678999999754 45777777766555566
Q ss_pred EEEEEe-CChhHHHhcCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCc
Q 037291 280 RIVVTT-RDKGVLEKFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNP 345 (349)
Q Consensus 280 ~IIiTt-R~~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~P 345 (349)
.+|++| +...+...+.. ....+++.+++.++..+.+.+.+-..+... ..+....|++.++|.+
T Consensus 160 vfI~aTte~~kI~~tI~S-Rc~~~ef~~ls~~el~~~L~~i~~~egi~i--e~eAL~~Ia~~s~Gsl 223 (507)
T PRK06645 160 IFIFATTEVQKIPATIIS-RCQRYDLRRLSFEEIFKLLEYITKQENLKT--DIEALRIIAYKSEGSA 223 (507)
T ss_pred EEEEEeCChHHhhHHHHh-cceEEEccCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCH
Confidence 666544 44444433321 346899999999999999988775433221 1244566888888765
No 46
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.80 E-value=1.2e-07 Score=87.53 Aligned_cols=191 Identities=10% Similarity=0.082 Sum_probs=111.7
Q ss_pred CCCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcC----CcceEEEEeccccccCCCChH
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGE----FDGSCFMSDVRRNSETGGGLE 217 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~----f~~~~~~~~~~~~~~~~~~~~ 217 (349)
.....++|-+.....+...+..+ .-...+.|+|+.|+||||+|+.+++.+-.. +...... . ..+--
T Consensus 20 ~~~~~l~Gh~~a~~~L~~a~~~g--rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~-----~---~~~~c 89 (351)
T PRK09112 20 SENTRLFGHEEAEAFLAQAYREG--KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLA-----D---PDPAS 89 (351)
T ss_pred CchhhccCcHHHHHHHHHHHHcC--CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccC-----C---CCCCC
Confidence 56678999999999999888765 234568899999999999999999976432 1111000 0 00011
Q ss_pred HHHHHHHHHhhcc------c--cc--c-cCCCchH---HHHHHh-----CCCeEEEEEeCCCCh--hHHHHHhcccCCCC
Q 037291 218 HLQKEMLSTILSE------K--LE--V-AGANIPH---FTKERV-----WRMKVLIVLDDVNEV--GQLEGLIGELDQFG 276 (349)
Q Consensus 218 ~l~~~ll~~~~~~------~--~~--~-~~~~~~~---~~~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~ 276 (349)
.....+....... . .. . ......+ .+.+.+ .+++-++|+|+++.. ...+.++..+....
T Consensus 90 ~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp 169 (351)
T PRK09112 90 PVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPP 169 (351)
T ss_pred HHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCC
Confidence 1222222111000 0 00 0 0000112 222222 345678999999744 45666766666544
Q ss_pred CCcEEEEEeC-ChhHHHhcCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCccc
Q 037291 277 PGSRIVVTTR-DKGVLEKFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNPLV 347 (349)
Q Consensus 277 ~gs~IIiTtR-~~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLa 347 (349)
....+|++|. ...++..... ....+++.+++.++..+++........ -..+.+..+++.++|.|..
T Consensus 170 ~~~~fiLit~~~~~llptIrS-Rc~~i~l~pl~~~~~~~~L~~~~~~~~----~~~~~~~~i~~~s~G~pr~ 236 (351)
T PRK09112 170 ARALFILISHSSGRLLPTIRS-RCQPISLKPLDDDELKKALSHLGSSQG----SDGEITEALLQRSKGSVRK 236 (351)
T ss_pred CCceEEEEECChhhccHHHHh-hccEEEecCCCHHHHHHHHHHhhcccC----CCHHHHHHHHHHcCCCHHH
Confidence 5555555554 3344333321 447999999999999999987432211 1124467899999999964
No 47
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.80 E-value=1.3e-07 Score=89.65 Aligned_cols=186 Identities=15% Similarity=0.120 Sum_probs=107.2
Q ss_pred CCCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCc---ceEEEEeccccccCCCChHH
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFD---GSCFMSDVRRNSETGGGLEH 218 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~---~~~~~~~~~~~~~~~~~~~~ 218 (349)
.....++|-+.-+..|..++... .-...+.++|+.|+||||+|+.+++.+..... ..|..+ ..
T Consensus 15 ~~f~dvVGQe~iv~~L~~~i~~~--ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C---------~s--- 80 (484)
T PRK14956 15 QFFRDVIHQDLAIGALQNALKSG--KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNEC---------TS--- 80 (484)
T ss_pred CCHHHHhChHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCC---------cH---
Confidence 44567899999899888888765 12345789999999999999999987643211 001100 00
Q ss_pred HHHHHHHHhhcccccc---cC---CCc---hHHHHH-HhCCCeEEEEEeCCCCh--hHHHHHhcccCCCCCCcEEEEEeC
Q 037291 219 LQKEMLSTILSEKLEV---AG---ANI---PHFTKE-RVWRMKVLIVLDDVNEV--GQLEGLIGELDQFGPGSRIVVTTR 286 (349)
Q Consensus 219 l~~~ll~~~~~~~~~~---~~---~~~---~~~~~~-~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTtR 286 (349)
...+.......-... .+ +.+ .+.+.. ...++.-++|+|+++.. ..++.++..+........+|++|.
T Consensus 81 -C~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTt 159 (484)
T PRK14956 81 -CLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATT 159 (484)
T ss_pred -HHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecC
Confidence 001100000000000 00 001 011111 12355679999999744 567788777765444555555554
Q ss_pred C-hhHHHhcCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCc
Q 037291 287 D-KGVLEKFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNP 345 (349)
Q Consensus 287 ~-~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~P 345 (349)
+ ..+...+.. ....|.+.+++.++..+.+.+.+-..+-. -..+....|++.++|.+
T Consensus 160 e~~kI~~TI~S-RCq~~~f~~ls~~~i~~~L~~i~~~Egi~--~e~eAL~~Ia~~S~Gd~ 216 (484)
T PRK14956 160 EFHKIPETILS-RCQDFIFKKVPLSVLQDYSEKLCKIENVQ--YDQEGLFWIAKKGDGSV 216 (484)
T ss_pred ChhhccHHHHh-hhheeeecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCChH
Confidence 4 333222211 34689999999999998888776433221 12345788889888876
No 48
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.78 E-value=3.7e-08 Score=96.71 Aligned_cols=178 Identities=14% Similarity=0.143 Sum_probs=106.2
Q ss_pred CCCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCc---------------------ce
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFD---------------------GS 200 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~---------------------~~ 200 (349)
.....++|.+..++.|..++... .-...+.++|+.|+||||+|+.+++.+...-. ..
T Consensus 13 ~tFddIIGQe~vv~~L~~ai~~~--rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~Dv 90 (709)
T PRK08691 13 KTFADLVGQEHVVKALQNALDEG--RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDL 90 (709)
T ss_pred CCHHHHcCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccce
Confidence 44568999999999999988764 22456789999999999999999986532100 00
Q ss_pred EEEEeccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCChh--HHHHHhcccCCCCCC
Q 037291 201 CFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEVG--QLEGLIGELDQFGPG 278 (349)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~g 278 (349)
..+. ... ..+.. .++.++.... ..-..+++-++|||+++... ..+.|+..+......
T Consensus 91 lEid----aAs-~~gVd-~IRelle~a~---------------~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~ 149 (709)
T PRK08691 91 LEID----AAS-NTGID-NIREVLENAQ---------------YAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEH 149 (709)
T ss_pred EEEe----ccc-cCCHH-HHHHHHHHHH---------------hhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCC
Confidence 0000 000 01111 1111111100 00012456689999997553 356666666544456
Q ss_pred cEEEEEeCCh-hHHHh-cCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCcc
Q 037291 279 SRIVVTTRDK-GVLEK-FRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNPL 346 (349)
Q Consensus 279 s~IIiTtR~~-~~~~~-~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL 346 (349)
+++|++|.+. .+... .+ ....+++.+++.++....+.+.+-..+-.. ..+.+..|++.++|.+.
T Consensus 150 v~fILaTtd~~kL~~TIrS--RC~~f~f~~Ls~eeI~~~L~~Il~kEgi~i--d~eAL~~Ia~~A~GslR 215 (709)
T PRK08691 150 VKFILATTDPHKVPVTVLS--RCLQFVLRNMTAQQVADHLAHVLDSEKIAY--EPPALQLLGRAAAGSMR 215 (709)
T ss_pred cEEEEEeCCccccchHHHH--HHhhhhcCCCCHHHHHHHHHHHHHHcCCCc--CHHHHHHHHHHhCCCHH
Confidence 6777776544 22222 12 345788999999999998887764433221 22456788888888763
No 49
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.78 E-value=1.4e-07 Score=90.11 Aligned_cols=178 Identities=17% Similarity=0.210 Sum_probs=108.4
Q ss_pred CCCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCC---------------------cce
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEF---------------------DGS 200 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f---------------------~~~ 200 (349)
.....+||-+.-++.|...+..+ .-...+.++|+.|+||||+|+.+++.+-... ...
T Consensus 10 ~~f~dliGQe~vv~~L~~a~~~~--ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRNAFTLN--KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC--CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 44567999998888888777654 1235788999999999999999987542111 111
Q ss_pred EEEEeccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCCh--hHHHHHhcccCCCCCC
Q 037291 201 CFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEV--GQLEGLIGELDQFGPG 278 (349)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~g 278 (349)
..+. .+. ..+..+ .+.++..... .-+.++.-++|+|+++.. ...+.++..+....+.
T Consensus 88 ~eid----aas-~~~vdd-IR~Iie~~~~---------------~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~ 146 (491)
T PRK14964 88 IEID----AAS-NTSVDD-IKVILENSCY---------------LPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPH 146 (491)
T ss_pred EEEe----ccc-CCCHHH-HHHHHHHHHh---------------ccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCC
Confidence 1221 110 112222 1122211100 001245668999999744 4577777777766667
Q ss_pred cEEEEEeCC-hhHHHhcCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCc
Q 037291 279 SRIVVTTRD-KGVLEKFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNP 345 (349)
Q Consensus 279 s~IIiTtR~-~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~P 345 (349)
+.+|++|.+ ..+...+.. ....+++.+++.++..+.+.+.+-.++... ..+.+..|++.++|.+
T Consensus 147 v~fIlatte~~Kl~~tI~S-Rc~~~~f~~l~~~el~~~L~~ia~~Egi~i--~~eAL~lIa~~s~Gsl 211 (491)
T PRK14964 147 VKFILATTEVKKIPVTIIS-RCQRFDLQKIPTDKLVEHLVDIAKKENIEH--DEESLKLIAENSSGSM 211 (491)
T ss_pred eEEEEEeCChHHHHHHHHH-hheeeecccccHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCH
Confidence 777766644 344332211 457899999999999999888775443221 1244677888888865
No 50
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.77 E-value=2.8e-07 Score=85.91 Aligned_cols=180 Identities=12% Similarity=0.144 Sum_probs=108.7
Q ss_pred CCCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcC----Cc-----------------ce
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGE----FD-----------------GS 200 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~----f~-----------------~~ 200 (349)
.....++|.+..++.+...+... .-.+.+.++|++|+||||+|+.++..+... +. ..
T Consensus 11 ~~~~~iig~~~~~~~l~~~~~~~--~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~ 88 (355)
T TIGR02397 11 QTFEDVIGQEHIVQTLKNAIKNG--RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV 88 (355)
T ss_pred CcHhhccCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 44567899999999999888654 234567899999999999999999875321 11 01
Q ss_pred EEEEeccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCCh--hHHHHHhcccCCCCCC
Q 037291 201 CFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEV--GQLEGLIGELDQFGPG 278 (349)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~g 278 (349)
.++.. .. ..+.. -.+.++..+... -..+++-++|+|+++.. ...+.+...+....+.
T Consensus 89 ~~~~~----~~-~~~~~-~~~~l~~~~~~~---------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~ 147 (355)
T TIGR02397 89 IEIDA----AS-NNGVD-DIREILDNVKYA---------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEH 147 (355)
T ss_pred EEeec----cc-cCCHH-HHHHHHHHHhcC---------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCccc
Confidence 11110 00 00111 111222111100 01234558899999754 4466676666654556
Q ss_pred cEEEEEeCChh-HHHhcCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCccc
Q 037291 279 SRIVVTTRDKG-VLEKFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNPLV 347 (349)
Q Consensus 279 s~IIiTtR~~~-~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLa 347 (349)
+.+|++|.+.. +...+.. ....+++.+++.++..+++...+-..+...+ .+.+..+++.++|.|..
T Consensus 148 ~~lIl~~~~~~~l~~~l~s-r~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~--~~a~~~l~~~~~g~~~~ 214 (355)
T TIGR02397 148 VVFILATTEPHKIPATILS-RCQRFDFKRIPLEDIVERLKKILDKEGIKIE--DEALELIARAADGSLRD 214 (355)
T ss_pred eeEEEEeCCHHHHHHHHHh-heeEEEcCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCChHH
Confidence 67777775554 3332221 3467899999999999988876643332211 24577788888888753
No 51
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.77 E-value=2.7e-07 Score=84.48 Aligned_cols=173 Identities=16% Similarity=0.208 Sum_probs=107.9
Q ss_pred CCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhc------CCcceEEEEeccccccCCCChHH
Q 037291 145 NGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTG------EFDGSCFMSDVRRNSETGGGLEH 218 (349)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~------~f~~~~~~~~~~~~~~~~~~~~~ 218 (349)
+.++|-+.-++.+...+..+ .-.....++|+.|+||||+|+.+++.+.. +.+...|.. .........+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~--~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~----~~~~~i~v~~ 77 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN--RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKP----INKKSIGVDD 77 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC--CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecc----ccCCCCCHHH
Confidence 45788888888888888654 23467789999999999999999986522 223222321 0111222223
Q ss_pred HHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCC--ChhHHHHHhcccCCCCCCcEEEEEeCChhHH-HhcC
Q 037291 219 LQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVN--EVGQLEGLIGELDQFGPGSRIVVTTRDKGVL-EKFR 295 (349)
Q Consensus 219 l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IIiTtR~~~~~-~~~~ 295 (349)
.+++...+... -..+++-++|+|+++ +....+.++..+....+++.+|++|.+...+ ....
T Consensus 78 -ir~~~~~~~~~---------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~ 141 (313)
T PRK05564 78 -IRNIIEEVNKK---------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIK 141 (313)
T ss_pred -HHHHHHHHhcC---------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHH
Confidence 22222222110 112345567777775 4556888888888777788888888765432 2211
Q ss_pred CCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCcc
Q 037291 296 GEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNPL 346 (349)
Q Consensus 296 ~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL 346 (349)
. ....+++.+++.++....+.+.. .. .+ .+.++.++.+++|.|.
T Consensus 142 S-Rc~~~~~~~~~~~~~~~~l~~~~-~~--~~---~~~~~~l~~~~~g~~~ 185 (313)
T PRK05564 142 S-RCQIYKLNRLSKEEIEKFISYKY-ND--IK---EEEKKSAIAFSDGIPG 185 (313)
T ss_pred h-hceeeeCCCcCHHHHHHHHHHHh-cC--CC---HHHHHHHHHHcCCCHH
Confidence 1 35789999999999988886553 11 11 1336678889999874
No 52
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.76 E-value=1.7e-07 Score=92.29 Aligned_cols=182 Identities=15% Similarity=0.179 Sum_probs=107.2
Q ss_pred CCCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCc------ceEEEE---------ec
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFD------GSCFMS---------DV 206 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~------~~~~~~---------~~ 206 (349)
.....+||-+.-++.|...+..+ .-...+.++|+.|+||||+|+.+++.+-.... +.|-.+ ++
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~~--rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ 90 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDLG--RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDL 90 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCc
Confidence 44578999999999998888765 12344689999999999999999986533210 000000 00
Q ss_pred cccccC-CCChHHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCCh--hHHHHHhcccCCCCCCcEEEE
Q 037291 207 RRNSET-GGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEV--GQLEGLIGELDQFGPGSRIVV 283 (349)
Q Consensus 207 ~~~~~~-~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIi 283 (349)
.++... ..+..+ .++++..+. ..-..+++-++|||+++.. ...+.|+..+.......++|+
T Consensus 91 ieidaas~~~Vdd-iR~li~~~~---------------~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL 154 (647)
T PRK07994 91 IEIDAASRTKVED-TRELLDNVQ---------------YAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLL 154 (647)
T ss_pred eeecccccCCHHH-HHHHHHHHH---------------hhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEE
Confidence 000000 001111 111111110 0112356679999999744 467778777765555666666
Q ss_pred EeCCh-hHHHh-cCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCc
Q 037291 284 TTRDK-GVLEK-FRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNP 345 (349)
Q Consensus 284 TtR~~-~~~~~-~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~P 345 (349)
+|.+. .++.. .. ....|++.+|+.++..+.+.+.+-..+-. ........|++.++|.|
T Consensus 155 ~Tt~~~kLl~TI~S--RC~~~~f~~Ls~~ei~~~L~~il~~e~i~--~e~~aL~~Ia~~s~Gs~ 214 (647)
T PRK07994 155 ATTDPQKLPVTILS--RCLQFHLKALDVEQIRQQLEHILQAEQIP--FEPRALQLLARAADGSM 214 (647)
T ss_pred ecCCccccchHHHh--hheEeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCH
Confidence 55544 44322 22 35789999999999999888765322211 11244567888888865
No 53
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.76 E-value=1.3e-08 Score=80.58 Aligned_cols=112 Identities=21% Similarity=0.254 Sum_probs=70.9
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhhcC-----CcceEEEEeccccccCCCChHHHHHHHHHHhhcccccc-cCCCchHH
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFTGE-----FDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEV-AGANIPHF 242 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~-----f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~-~~~~~~~~ 242 (349)
.+.+.|+|++|+|||++++.+++..... -...+|+. ... ..+...+...++..+....... ....+...
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~ 78 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVN----CPS-SRTPRDFAQEILEALGLPLKSRQTSDELRSL 78 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEE----HHH-HSSHHHHHHHHHHHHT-SSSSTS-HHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEE----eCC-CCCHHHHHHHHHHHhCccccccCCHHHHHHH
Confidence 4778999999999999999999976542 23344554 333 3478889999998887765552 22333355
Q ss_pred HHHHhCCC-eEEEEEeCCCCh---hHHHHHhcccCCCCCCcEEEEEeCC
Q 037291 243 TKERVWRM-KVLIVLDDVNEV---GQLEGLIGELDQFGPGSRIVVTTRD 287 (349)
Q Consensus 243 ~~~~l~~k-~~LlVlDdv~~~---~~~~~l~~~~~~~~~gs~IIiTtR~ 287 (349)
+.+.+... ..+||||+++.. ..++.+..... ..+..+|++.+.
T Consensus 79 ~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 79 LIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 55555444 469999999765 23444443333 566778887764
No 54
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.74 E-value=3e-07 Score=86.08 Aligned_cols=174 Identities=13% Similarity=0.147 Sum_probs=103.3
Q ss_pred CCcccccchhhhHHHhhhhcCCC-------CeeEEEEeccCccchHHHHHHHHHhhhcCCc-------------------
Q 037291 145 NGLVGLNSRIEQIKPFLCMDLSD-------TVQIVGIWGMGGIGKTTLAEAIFDQFTGEFD------------------- 198 (349)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~------------------- 198 (349)
..++|-+.-++.|...+...... -...+.++|++|+|||++|+.++..+-....
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 46788888888888888765210 2466889999999999999999886532211
Q ss_pred -ceEEEEeccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCCh--hHHHHHhcccCCC
Q 037291 199 -GSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEV--GQLEGLIGELDQF 275 (349)
Q Consensus 199 -~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~ 275 (349)
...++. .........+ .+.+...+.. .-..+++-++|+|+++.. ...+.++..+...
T Consensus 85 pD~~~i~----~~~~~i~i~~-iR~l~~~~~~---------------~p~~~~~kViiIDead~m~~~aanaLLk~LEep 144 (394)
T PRK07940 85 PDVRVVA----PEGLSIGVDE-VRELVTIAAR---------------RPSTGRWRIVVIEDADRLTERAANALLKAVEEP 144 (394)
T ss_pred CCEEEec----cccccCCHHH-HHHHHHHHHh---------------CcccCCcEEEEEechhhcCHHHHHHHHHHhhcC
Confidence 111111 0000111111 1111111110 001234558888999754 3456666666655
Q ss_pred CCCcEEEEEeCCh-hHHHhcCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCcc
Q 037291 276 GPGSRIVVTTRDK-GVLEKFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNPL 346 (349)
Q Consensus 276 ~~gs~IIiTtR~~-~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL 346 (349)
.++..+|++|.+. .+...+.. ....+.+.+++.++..+.+.... + . + .+.+..++..++|.|.
T Consensus 145 ~~~~~fIL~a~~~~~llpTIrS-Rc~~i~f~~~~~~~i~~~L~~~~-~--~-~---~~~a~~la~~s~G~~~ 208 (394)
T PRK07940 145 PPRTVWLLCAPSPEDVLPTIRS-RCRHVALRTPSVEAVAEVLVRRD-G--V-D---PETARRAARASQGHIG 208 (394)
T ss_pred CCCCeEEEEECChHHChHHHHh-hCeEEECCCCCHHHHHHHHHHhc-C--C-C---HHHHHHHHHHcCCCHH
Confidence 5677677766664 33333221 45789999999999998887432 1 1 1 2346778889999875
No 55
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.74 E-value=2.1e-07 Score=81.45 Aligned_cols=144 Identities=13% Similarity=0.176 Sum_probs=82.5
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHHHh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERV 247 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l 247 (349)
..+.+.|+|++|+|||+|+..+++.....-..+.|+. ... ....... +.+.+
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~----~~~----~~~~~~~--------------------~~~~~ 95 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVP----LDK----RAWFVPE--------------------VLEGM 95 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE----HHH----HhhhhHH--------------------HHHHh
Confidence 3467889999999999999999997765434455554 111 0000000 11111
Q ss_pred CCCeEEEEEeCCCCh---hHHH-HHhcccCCC-CCC-cEEEEEeCCh---------hHHHhcCCCCCcEEEcCCCCHHHH
Q 037291 248 WRMKVLIVLDDVNEV---GQLE-GLIGELDQF-GPG-SRIVVTTRDK---------GVLEKFRGEEKKIHRVNGLEFEEA 312 (349)
Q Consensus 248 ~~k~~LlVlDdv~~~---~~~~-~l~~~~~~~-~~g-s~IIiTtR~~---------~~~~~~~~~~~~~~~l~~L~~~ea 312 (349)
.. --+|+|||++.. .+|+ .+...+... ..| .++|+||+.. .+...+. ...++++++++.++-
T Consensus 96 ~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~--~g~~~~l~~~~~~~~ 172 (235)
T PRK08084 96 EQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLD--WGQIYKLQPLSDEEK 172 (235)
T ss_pred hh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHh--CCceeeecCCCHHHH
Confidence 11 237899999543 2222 222222211 223 3788888754 2233333 457899999999999
Q ss_pred HHHHHhhhcCCCCCCchHHHHHHHHHHHhcCC
Q 037291 313 FEHFCNFAFKENHCPTNLNWHSRRVVEYAKGN 344 (349)
Q Consensus 313 ~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~ 344 (349)
.+++.+++...+-. -.++...-+++.+.|.
T Consensus 173 ~~~l~~~a~~~~~~--l~~~v~~~L~~~~~~d 202 (235)
T PRK08084 173 LQALQLRARLRGFE--LPEDVGRFLLKRLDRE 202 (235)
T ss_pred HHHHHHHHHHcCCC--CCHHHHHHHHHhhcCC
Confidence 99998766432211 1234556666666654
No 56
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.74 E-value=2.1e-07 Score=93.32 Aligned_cols=170 Identities=19% Similarity=0.282 Sum_probs=97.6
Q ss_pred CCCCCcccccchhh---hHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHH
Q 037291 142 DSSNGLVGLNSRIE---QIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEH 218 (349)
Q Consensus 142 ~~~~~~vGr~~~~~---~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 218 (349)
...++|+|.+..+. .+..++... ..+.+.|+|++|+||||||+.+++.....|. .+. .+ ..+...
T Consensus 25 ~tldd~vGQe~ii~~~~~L~~~i~~~---~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~---~ln----a~--~~~i~d 92 (725)
T PRK13341 25 RTLEEFVGQDHILGEGRLLRRAIKAD---RVGSLILYGPPGVGKTTLARIIANHTRAHFS---SLN----AV--LAGVKD 92 (725)
T ss_pred CcHHHhcCcHHHhhhhHHHHHHHhcC---CCceEEEECCCCCCHHHHHHHHHHHhcCcce---eeh----hh--hhhhHH
Confidence 44467899888774 455555543 5567789999999999999999987654442 111 00 111111
Q ss_pred HHHHHHHHhhcccccccCCCchHHHHHH--hCCCeEEEEEeCCCC--hhHHHHHhcccCCCCCCcEEEEE--eCChh--H
Q 037291 219 LQKEMLSTILSEKLEVAGANIPHFTKER--VWRMKVLIVLDDVNE--VGQLEGLIGELDQFGPGSRIVVT--TRDKG--V 290 (349)
Q Consensus 219 l~~~ll~~~~~~~~~~~~~~~~~~~~~~--l~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IIiT--tR~~~--~ 290 (349)
+ +..+. ...+. ..+++.+|||||++. ..+.+.+...+. .++.++|+ |.+.. +
T Consensus 93 i-r~~i~----------------~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l 152 (725)
T PRK13341 93 L-RAEVD----------------RAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEV 152 (725)
T ss_pred H-HHHHH----------------HHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhh
Confidence 1 11111 11111 124577999999964 345556665443 35555553 34331 2
Q ss_pred HHhcCCCCCcEEEcCCCCHHHHHHHHHhhhcC-----CCCCCchHHHHHHHHHHHhcCC
Q 037291 291 LEKFRGEEKKIHRVNGLEFEEAFEHFCNFAFK-----ENHCPTNLNWHSRRVVEYAKGN 344 (349)
Q Consensus 291 ~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~-----~~~~~~~~~~~~~~i~~~~~G~ 344 (349)
...+.. ....+.+++|+.++...++.+.+-. ......-..+..+.|++.+.|.
T Consensus 153 ~~aL~S-R~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD 210 (725)
T PRK13341 153 NKALVS-RSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGD 210 (725)
T ss_pred hhHhhc-cccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCC
Confidence 111110 2457999999999999998876531 0111112235567788888775
No 57
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.73 E-value=2.7e-07 Score=90.66 Aligned_cols=191 Identities=16% Similarity=0.189 Sum_probs=105.8
Q ss_pred CCCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcC-CcceEEEEeccccccCCCChHHHH
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGE-FDGSCFMSDVRRNSETGGGLEHLQ 220 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~ 220 (349)
....++||-+.-++.|..++... .-...+.++|+.|+||||+|+.+++.+-.. -+.. .. .....++.-...
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~~--rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~---~~---~~~~pCg~C~~C 84 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQQ--RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQ---GG---ITATPCGVCQAC 84 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccc---cC---CCCCCCCccHHH
Confidence 44577999888888888888765 234566899999999999999998865311 0000 00 000000000111
Q ss_pred HHHHHHhhcccccc---cCCCchHHHHHHh--------CCCeEEEEEeCCCCh--hHHHHHhcccCCCCCCcEEEEEeCC
Q 037291 221 KEMLSTILSEKLEV---AGANIPHFTKERV--------WRMKVLIVLDDVNEV--GQLEGLIGELDQFGPGSRIVVTTRD 287 (349)
Q Consensus 221 ~~ll~~~~~~~~~~---~~~~~~~~~~~~l--------~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTtR~ 287 (349)
..+...-...-... .+..+ +.+++.+ .++.-++|||+++.. ...+.++..+........+|++|.+
T Consensus 85 ~~i~~g~h~D~~eldaas~~~V-d~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd 163 (618)
T PRK14951 85 RDIDSGRFVDYTELDAASNRGV-DEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTD 163 (618)
T ss_pred HHHHcCCCCceeecCcccccCH-HHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECC
Confidence 11100000000000 00000 1111111 234568899999754 4577777777654556666666544
Q ss_pred -hhHHHh-cCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCc
Q 037291 288 -KGVLEK-FRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNP 345 (349)
Q Consensus 288 -~~~~~~-~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~P 345 (349)
..+... .. ....+++++|+.++..+.+.+.+-..+...+ .+....|++.++|.+
T Consensus 164 ~~kil~TIlS--Rc~~~~f~~Ls~eei~~~L~~i~~~egi~ie--~~AL~~La~~s~Gsl 219 (618)
T PRK14951 164 PQKVPVTVLS--RCLQFNLRPMAPETVLEHLTQVLAAENVPAE--PQALRLLARAARGSM 219 (618)
T ss_pred chhhhHHHHH--hceeeecCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCH
Confidence 333322 22 4578999999999999988877644332211 244677778887764
No 58
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.72 E-value=2.2e-07 Score=90.03 Aligned_cols=178 Identities=15% Similarity=0.114 Sum_probs=105.6
Q ss_pred CCCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcC--C-------------------cce
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGE--F-------------------DGS 200 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~--f-------------------~~~ 200 (349)
.....+||-+.-++.|..++... .-...+.++|+.|+||||+|+.+++.+-.. . ...
T Consensus 13 ~~f~divGq~~v~~~L~~~~~~~--~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 13 RCFQEVIGQAPVVRALSNALDQQ--YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhC--CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 44567999999999999999765 223456899999999999999999865321 0 001
Q ss_pred EEEEeccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCCh--hHHHHHhcccCCCCCC
Q 037291 201 CFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEV--GQLEGLIGELDQFGPG 278 (349)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~g 278 (349)
..+. ... ..+..++ +.++..+.- .-..++.-++|+|+++.. ...+.++..+....+.
T Consensus 91 ~eid----aas-~~~v~~i-R~l~~~~~~---------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~ 149 (509)
T PRK14958 91 FEVD----AAS-RTKVEDT-RELLDNIPY---------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSH 149 (509)
T ss_pred EEEc----ccc-cCCHHHH-HHHHHHHhh---------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCC
Confidence 1111 000 1122221 122221110 011245568999999754 4567777777655566
Q ss_pred cEEEEEeCCh-hHHHhcCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCc
Q 037291 279 SRIVVTTRDK-GVLEKFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNP 345 (349)
Q Consensus 279 s~IIiTtR~~-~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~P 345 (349)
+++|++|.+. .+...+. .....+++.+++.++....+...+-..+-.. ..+....|++.++|.+
T Consensus 150 ~~fIlattd~~kl~~tI~-SRc~~~~f~~l~~~~i~~~l~~il~~egi~~--~~~al~~ia~~s~Gsl 214 (509)
T PRK14958 150 VKFILATTDHHKLPVTVL-SRCLQFHLAQLPPLQIAAHCQHLLKEENVEF--ENAALDLLARAANGSV 214 (509)
T ss_pred eEEEEEECChHhchHHHH-HHhhhhhcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCcH
Confidence 7777666544 3322211 0346789999999998877666553332211 1234567788888865
No 59
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.72 E-value=1.7e-07 Score=81.09 Aligned_cols=154 Identities=15% Similarity=0.197 Sum_probs=88.3
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcCCc--ceEEEEeccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHH
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGEFD--GSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKE 245 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~ 245 (349)
....+.|+|+.|+|||.|.+++++.+....+ .++|+. ...+...+...+.... . ..+++
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~-----------~~~f~~~~~~~~~~~~-------~-~~~~~ 93 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS-----------AEEFIREFADALRDGE-------I-EEFKD 93 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE-----------HHHHHHHHHHHHHTTS-------H-HHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec-----------HHHHHHHHHHHHHccc-------c-hhhhh
Confidence 4556789999999999999999998765433 244443 2334444444443311 1 34445
Q ss_pred HhCCCeEEEEEeCCCCh---hHH-HHHhcccCCC-CCCcEEEEEeCCh---------hHHHhcCCCCCcEEEcCCCCHHH
Q 037291 246 RVWRMKVLIVLDDVNEV---GQL-EGLIGELDQF-GPGSRIVVTTRDK---------GVLEKFRGEEKKIHRVNGLEFEE 311 (349)
Q Consensus 246 ~l~~k~~LlVlDdv~~~---~~~-~~l~~~~~~~-~~gs~IIiTtR~~---------~~~~~~~~~~~~~~~l~~L~~~e 311 (349)
.++. -=+|+|||++.. ..+ +.+...+... ..|.++|+|++.. ++...+. ..-++++.+++.++
T Consensus 94 ~~~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~--~Gl~~~l~~pd~~~ 170 (219)
T PF00308_consen 94 RLRS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLS--WGLVVELQPPDDED 170 (219)
T ss_dssp HHCT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHH--CSEEEEE----HHH
T ss_pred hhhc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHh--hcchhhcCCCCHHH
Confidence 5553 347789999643 212 2333333221 3466899999543 2233333 45789999999999
Q ss_pred HHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCc
Q 037291 312 AFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNP 345 (349)
Q Consensus 312 a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~P 345 (349)
..+++.+.+-..+-. -.+++++-+++.+.+..
T Consensus 171 r~~il~~~a~~~~~~--l~~~v~~~l~~~~~~~~ 202 (219)
T PF00308_consen 171 RRRILQKKAKERGIE--LPEEVIEYLARRFRRDV 202 (219)
T ss_dssp HHHHHHHHHHHTT----S-HHHHHHHHHHTTSSH
T ss_pred HHHHHHHHHHHhCCC--CcHHHHHHHHHhhcCCH
Confidence 999999887543322 22355666766665543
No 60
>PRK05642 DNA replication initiation factor; Validated
Probab=98.71 E-value=2.8e-07 Score=80.64 Aligned_cols=143 Identities=14% Similarity=0.254 Sum_probs=83.9
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHHHhC
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERVW 248 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~ 248 (349)
...+.|+|.+|+|||.|++.+++.+...-..++|+. . .++.... ..+.+.+.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~----~-------~~~~~~~-----------------~~~~~~~~ 96 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLP----L-------AELLDRG-----------------PELLDNLE 96 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEee----H-------HHHHhhh-----------------HHHHHhhh
Confidence 367889999999999999999987765444556665 1 1111110 11222222
Q ss_pred CCeEEEEEeCCCCh---hHH-HHHhcccCCC-CCCcEEEEEeCChhH---------HHhcCCCCCcEEEcCCCCHHHHHH
Q 037291 249 RMKVLIVLDDVNEV---GQL-EGLIGELDQF-GPGSRIVVTTRDKGV---------LEKFRGEEKKIHRVNGLEFEEAFE 314 (349)
Q Consensus 249 ~k~~LlVlDdv~~~---~~~-~~l~~~~~~~-~~gs~IIiTtR~~~~---------~~~~~~~~~~~~~l~~L~~~ea~~ 314 (349)
+-. +||+||+... ..+ +.+...++.. ..|..+|+|++.... ...+. ...++++.+++.++-.+
T Consensus 97 ~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~--~gl~~~l~~~~~e~~~~ 173 (234)
T PRK05642 97 QYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLT--LALVFQMRGLSDEDKLR 173 (234)
T ss_pred hCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHh--cCeeeecCCCCHHHHHH
Confidence 222 6889999522 233 2244433322 346678888875321 22222 34678999999999999
Q ss_pred HHHhhhcCCCCCCchHHHHHHHHHHHhcCC
Q 037291 315 HFCNFAFKENHCPTNLNWHSRRVVEYAKGN 344 (349)
Q Consensus 315 Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~ 344 (349)
++..++....-.. ..+...-+++.+.|.
T Consensus 174 il~~ka~~~~~~l--~~ev~~~L~~~~~~d 201 (234)
T PRK05642 174 ALQLRASRRGLHL--TDEVGHFILTRGTRS 201 (234)
T ss_pred HHHHHHHHcCCCC--CHHHHHHHHHhcCCC
Confidence 9986664332111 134556666666654
No 61
>PRK09087 hypothetical protein; Validated
Probab=98.69 E-value=3.1e-07 Score=79.76 Aligned_cols=135 Identities=12% Similarity=0.138 Sum_probs=78.9
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHHHhC
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERVW 248 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~ 248 (349)
.+.+.|||++|+|||+|++.+++... ..|+.. ..+...++.. +.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-----~~~i~~-----------~~~~~~~~~~--------------------~~ 87 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-----ALLIHP-----------NEIGSDAANA--------------------AA 87 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-----CEEecH-----------HHcchHHHHh--------------------hh
Confidence 46689999999999999999887542 224430 0111111111 01
Q ss_pred CCeEEEEEeCCCChh-HHHHHhcccCCC-CCCcEEEEEeCCh---------hHHHhcCCCCCcEEEcCCCCHHHHHHHHH
Q 037291 249 RMKVLIVLDDVNEVG-QLEGLIGELDQF-GPGSRIVVTTRDK---------GVLEKFRGEEKKIHRVNGLEFEEAFEHFC 317 (349)
Q Consensus 249 ~k~~LlVlDdv~~~~-~~~~l~~~~~~~-~~gs~IIiTtR~~---------~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~ 317 (349)
+ -+|++||++... .-+.+...++.. ..|..+|+|++.. .+...+. ...++++++++.++-.+++.
T Consensus 88 ~--~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~--~gl~~~l~~pd~e~~~~iL~ 163 (226)
T PRK09087 88 E--GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLK--AATVVEIGEPDDALLSQVIF 163 (226)
T ss_pred c--CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHh--CCceeecCCCCHHHHHHHHH
Confidence 1 278889995321 112233333221 3467788888742 2333333 55799999999999999998
Q ss_pred hhhcCCCCCCchHHHHHHHHHHHhcCCc
Q 037291 318 NFAFKENHCPTNLNWHSRRVVEYAKGNP 345 (349)
Q Consensus 318 ~~a~~~~~~~~~~~~~~~~i~~~~~G~P 345 (349)
+++-...-. -.+++.+-|++.+.|..
T Consensus 164 ~~~~~~~~~--l~~ev~~~La~~~~r~~ 189 (226)
T PRK09087 164 KLFADRQLY--VDPHVVYYLVSRMERSL 189 (226)
T ss_pred HHHHHcCCC--CCHHHHHHHHHHhhhhH
Confidence 887432211 11345566666666544
No 62
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.69 E-value=2.5e-07 Score=87.08 Aligned_cols=157 Identities=20% Similarity=0.292 Sum_probs=89.9
Q ss_pred CCCcccccchhhhHHHhhhhc----------CCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCC
Q 037291 144 SNGLVGLNSRIEQIKPFLCMD----------LSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETG 213 (349)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~----------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 213 (349)
...+.|++..++++.+.+... .-...+-|.|+|++|+|||+||+.+++..... |+. ...
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~-----~i~----v~~-- 198 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT-----FIR----VVG-- 198 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCC-----EEE----eeh--
Confidence 356789999999998876431 01235678899999999999999999976533 221 110
Q ss_pred CChHHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCChh------------H----HHHHhcccCCC--
Q 037291 214 GGLEHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEVG------------Q----LEGLIGELDQF-- 275 (349)
Q Consensus 214 ~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~~------------~----~~~l~~~~~~~-- 275 (349)
..+ .....+... ..+...+...-...+.+|+||+++... . +..++..+..+
T Consensus 199 ---~~l----~~~~~g~~~----~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~ 267 (389)
T PRK03992 199 ---SEL----VQKFIGEGA----RLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP 267 (389)
T ss_pred ---HHH----hHhhccchH----HHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC
Confidence 011 111111000 001011111223457899999997431 1 22233222222
Q ss_pred CCCcEEEEEeCChhHHHhc--C-CCCCcEEEcCCCCHHHHHHHHHhhhcC
Q 037291 276 GPGSRIVVTTRDKGVLEKF--R-GEEKKIHRVNGLEFEEAFEHFCNFAFK 322 (349)
Q Consensus 276 ~~gs~IIiTtR~~~~~~~~--~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~ 322 (349)
..+..||.||.....+... . ......+++++.+.++..++|..+..+
T Consensus 268 ~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~ 317 (389)
T PRK03992 268 RGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRK 317 (389)
T ss_pred CCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhcc
Confidence 2355777787765432221 1 113467999999999999999987643
No 63
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.68 E-value=2.2e-07 Score=87.73 Aligned_cols=194 Identities=12% Similarity=0.117 Sum_probs=105.0
Q ss_pred CCCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcC--CcceEEEEeccccccCCCChHHH
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGE--FDGSCFMSDVRRNSETGGGLEHL 219 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~l 219 (349)
....+++|.+.-++.|..++..+ .-...+.++|+.|+||||+|+.+++.+... +....|..+....+. -=..
T Consensus 13 ~~~~eiiGq~~~~~~L~~~~~~~--~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~----~c~~ 86 (397)
T PRK14955 13 KKFADITAQEHITRTIQNSLRMG--RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCG----ECES 86 (397)
T ss_pred CcHhhccChHHHHHHHHHHHHhC--CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCC----CCHH
Confidence 44568999998888888888754 123457899999999999999999876321 100001100000000 0000
Q ss_pred HHHHHHHhhcccc---cccC---CCchHHHHHH-----hCCCeEEEEEeCCCCh--hHHHHHhcccCCCCCCcEEEEEeC
Q 037291 220 QKEMLSTILSEKL---EVAG---ANIPHFTKER-----VWRMKVLIVLDDVNEV--GQLEGLIGELDQFGPGSRIVVTTR 286 (349)
Q Consensus 220 ~~~ll~~~~~~~~---~~~~---~~~~~~~~~~-----l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTtR 286 (349)
...+.......-. .... +.+ ..+.+. ..+.+-++|+|+++.. ..++.+...+....+.+.+|++|.
T Consensus 87 c~~~~~~~~~n~~~~~~~~~~~id~I-r~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~ 165 (397)
T PRK14955 87 CRDFDAGTSLNISEFDAASNNSVDDI-RLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATT 165 (397)
T ss_pred HHHHhcCCCCCeEeecccccCCHHHH-HHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeC
Confidence 0011000000000 0000 111 111111 2345668899999754 456777777766556677666554
Q ss_pred -ChhHHHhcCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCc
Q 037291 287 -DKGVLEKFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNP 345 (349)
Q Consensus 287 -~~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~P 345 (349)
...+...+.. ....+++.+++.++..+.+...+-..+.. -..+.+..+++.++|.+
T Consensus 166 ~~~kl~~tl~s-R~~~v~f~~l~~~ei~~~l~~~~~~~g~~--i~~~al~~l~~~s~g~l 222 (397)
T PRK14955 166 ELHKIPATIAS-RCQRFNFKRIPLEEIQQQLQGICEAEGIS--VDADALQLIGRKAQGSM 222 (397)
T ss_pred ChHHhHHHHHH-HHHHhhcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCH
Confidence 3344332210 23578999999999988887765322211 11245677888888865
No 64
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.67 E-value=5.3e-07 Score=87.85 Aligned_cols=177 Identities=15% Similarity=0.134 Sum_probs=105.2
Q ss_pred CCCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCc---------------------ce
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFD---------------------GS 200 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~---------------------~~ 200 (349)
.....++|-+.-++.+..++... .-...+.++|+.|+||||+|+.+++.+..... ..
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~~--~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQQ--RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcC--CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 44567899999999998888754 22355679999999999999999987632110 00
Q ss_pred EEEEeccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCChh--HHHHHhcccCCCCCC
Q 037291 201 CFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEVG--QLEGLIGELDQFGPG 278 (349)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~g 278 (349)
.++. ... ..+... .+.++..... .-..+++-++|+|+++... ..+.++..+......
T Consensus 91 ~ei~----~~~-~~~vd~-ir~l~~~~~~---------------~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~ 149 (527)
T PRK14969 91 IEVD----AAS-NTQVDA-MRELLDNAQY---------------APTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEH 149 (527)
T ss_pred eEee----ccc-cCCHHH-HHHHHHHHhh---------------CcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCC
Confidence 1110 000 111111 1112111100 0113456789999998553 466777777655556
Q ss_pred cEEEEEeCCh-hHHHh-cCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCc
Q 037291 279 SRIVVTTRDK-GVLEK-FRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNP 345 (349)
Q Consensus 279 s~IIiTtR~~-~~~~~-~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~P 345 (349)
+.+|++|.+. .++.. .. ....+++.+++.++..+.+.+.+-..+-.. ..+.+..|++.++|.+
T Consensus 150 ~~fIL~t~d~~kil~tI~S--Rc~~~~f~~l~~~~i~~~L~~il~~egi~~--~~~al~~la~~s~Gsl 214 (527)
T PRK14969 150 VKFILATTDPQKIPVTVLS--RCLQFNLKQMPPPLIVSHLQHILEQENIPF--DATALQLLARAAAGSM 214 (527)
T ss_pred EEEEEEeCChhhCchhHHH--HHHHHhcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCH
Confidence 6666666543 32211 11 246889999999999988877653332111 1244577888888866
No 65
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.67 E-value=6e-07 Score=84.13 Aligned_cols=179 Identities=13% Similarity=0.200 Sum_probs=104.1
Q ss_pred CCCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcC--------CcceEEEEeccccccCC
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGE--------FDGSCFMSDVRRNSETG 213 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~--------f~~~~~~~~~~~~~~~~ 213 (349)
...+.++|.+..++.+...+... .-.+.+.++|++|+||||+|+.+++.+... |...++-. ... . .
T Consensus 14 ~~~~~iig~~~~~~~l~~~i~~~--~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l--~~~-~-~ 87 (367)
T PRK14970 14 QTFDDVVGQSHITNTLLNAIENN--HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFEL--DAA-S-N 87 (367)
T ss_pred CcHHhcCCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEe--ccc-c-C
Confidence 44567899999999999888754 234678899999999999999998876431 22212111 000 0 1
Q ss_pred CChHHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCCh--hHHHHHhcccCCCCCCcEEEEEeCC-hhH
Q 037291 214 GGLEHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEV--GQLEGLIGELDQFGPGSRIVVTTRD-KGV 290 (349)
Q Consensus 214 ~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTtR~-~~~ 290 (349)
.+... ...++..+... -..+++-++|+|+++.. ..++.+...+......+.+|+++.. ..+
T Consensus 88 ~~~~~-i~~l~~~~~~~---------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl 151 (367)
T PRK14970 88 NSVDD-IRNLIDQVRIP---------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKI 151 (367)
T ss_pred CCHHH-HHHHHHHHhhc---------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccC
Confidence 11111 11222211100 11234558999999654 3456665555443445566655533 333
Q ss_pred HHhcCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCc
Q 037291 291 LEKFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNP 345 (349)
Q Consensus 291 ~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~P 345 (349)
...+.. ....+++.+++.++....+...+...+-..+ .+.++.+++.++|.+
T Consensus 152 ~~~l~s-r~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~--~~al~~l~~~~~gdl 203 (367)
T PRK14970 152 IPTILS-RCQIFDFKRITIKDIKEHLAGIAVKEGIKFE--DDALHIIAQKADGAL 203 (367)
T ss_pred CHHHHh-cceeEecCCccHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHhCCCCH
Confidence 222111 3457999999999999888876644332111 245677777777754
No 66
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.66 E-value=3.4e-07 Score=89.04 Aligned_cols=187 Identities=11% Similarity=0.073 Sum_probs=103.8
Q ss_pred CCCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHH
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQK 221 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 221 (349)
.....++|.+..++.+...+..+ .-.+.+.++|+.|+||||+|+.+++.+...- |.. .. .+ +--....
T Consensus 13 ~~F~dIIGQe~iv~~L~~aI~~~--rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~----~~~-~~-~C----g~C~sCr 80 (605)
T PRK05896 13 HNFKQIIGQELIKKILVNAILNN--KLTHAYIFSGPRGIGKTSIAKIFAKAINCLN----PKD-GD-CC----NSCSVCE 80 (605)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC--CCCceEEEECCCCCCHHHHHHHHHHHhcCCC----CCC-CC-CC----cccHHHH
Confidence 44578999999999998888654 2246688999999999999999998763210 000 00 00 0000111
Q ss_pred HHHHHhhccccccc---CCCchHHHH---HH-----hCCCeEEEEEeCCCCh--hHHHHHhcccCCCCCCcEEEEEeCC-
Q 037291 222 EMLSTILSEKLEVA---GANIPHFTK---ER-----VWRMKVLIVLDDVNEV--GQLEGLIGELDQFGPGSRIVVTTRD- 287 (349)
Q Consensus 222 ~ll~~~~~~~~~~~---~~~~~~~~~---~~-----l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTtR~- 287 (349)
.+.......-...+ ...+ +.++ +. ..+++-++|+|+++.. ...+.|+..+......+.+|++|..
T Consensus 81 ~i~~~~h~DiieIdaas~igV-d~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~ 159 (605)
T PRK05896 81 SINTNQSVDIVELDAASNNGV-DEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEF 159 (605)
T ss_pred HHHcCCCCceEEeccccccCH-HHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCCh
Confidence 11100000000000 0000 1111 10 1123446999999754 4566676666544455666655543
Q ss_pred hhHHHh-cCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCc
Q 037291 288 KGVLEK-FRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNP 345 (349)
Q Consensus 288 ~~~~~~-~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~P 345 (349)
..+... .. ....+++.+++.++....+...+-..+... ..+.+..+++.++|.+
T Consensus 160 ~KLl~TI~S--Rcq~ieF~~Ls~~eL~~~L~~il~kegi~I--s~eal~~La~lS~Gdl 214 (605)
T PRK05896 160 QKIPLTIIS--RCQRYNFKKLNNSELQELLKSIAKKEKIKI--EDNAIDKIADLADGSL 214 (605)
T ss_pred HhhhHHHHh--hhhhcccCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCcH
Confidence 334322 22 356899999999999988887664332111 1234677888888865
No 67
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.65 E-value=4.4e-07 Score=86.79 Aligned_cols=160 Identities=15% Similarity=0.187 Sum_probs=94.3
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhhcCC--cceEEEEeccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHHH
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFTGEF--DGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKER 246 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~ 246 (349)
...+.|+|..|+|||+|++.+++.+.... ..++|+. ...+...+...+.... ..+ ..+.+.
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~-----------~~~f~~~~~~~l~~~~-----~~~-~~~~~~ 203 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS-----------GDEFARKAVDILQKTH-----KEI-EQFKNE 203 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHHHHHHHHHHHhh-----hHH-HHHHHH
Confidence 45688999999999999999999765432 2234443 2344555554443210 011 233333
Q ss_pred hCCCeEEEEEeCCCCh----hHHHHHhcccCCC-CCCcEEEEEeCCh-hHH--------HhcCCCCCcEEEcCCCCHHHH
Q 037291 247 VWRMKVLIVLDDVNEV----GQLEGLIGELDQF-GPGSRIVVTTRDK-GVL--------EKFRGEEKKIHRVNGLEFEEA 312 (349)
Q Consensus 247 l~~k~~LlVlDdv~~~----~~~~~l~~~~~~~-~~gs~IIiTtR~~-~~~--------~~~~~~~~~~~~l~~L~~~ea 312 (349)
+. ..-+|||||+... ...+.+...+... ..+..||+|+... ..+ ..+. ..-++++++++.++.
T Consensus 204 ~~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~--~Gl~~~L~~pd~e~r 280 (450)
T PRK14087 204 IC-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFN--MGLSIAIQKLDNKTA 280 (450)
T ss_pred hc-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHh--CCceeccCCcCHHHH
Confidence 33 3448889999533 1223343333321 3455688886533 222 2222 456788999999999
Q ss_pred HHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCcccc
Q 037291 313 FEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNPLVL 348 (349)
Q Consensus 313 ~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal 348 (349)
.+++.+++-..+....-.++.+.-|++.++|.|-.|
T Consensus 281 ~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L 316 (450)
T PRK14087 281 TAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKI 316 (450)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHH
Confidence 999988874322111223467788888888887543
No 68
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.65 E-value=3.1e-07 Score=84.27 Aligned_cols=149 Identities=16% Similarity=0.208 Sum_probs=86.4
Q ss_pred CCCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHH
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQK 221 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 221 (349)
....+++|.+...+.+..++... .-...+.++|++|+||||+|+.+++.....+ .++. . + ..... ...
T Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~~--~~~~~lll~G~~G~GKT~la~~l~~~~~~~~---~~i~-~---~--~~~~~-~i~ 85 (316)
T PHA02544 18 STIDECILPAADKETFKSIVKKG--RIPNMLLHSPSPGTGKTTVAKALCNEVGAEV---LFVN-G---S--DCRID-FVR 85 (316)
T ss_pred CcHHHhcCcHHHHHHHHHHHhcC--CCCeEEEeeCcCCCCHHHHHHHHHHHhCccc---eEec-c---C--cccHH-HHH
Confidence 55578999999999999888754 2356777799999999999999998763221 2222 1 1 11111 111
Q ss_pred HHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCCh---hHHHHHhcccCCCCCCcEEEEEeCChhH-HHhcCCC
Q 037291 222 EMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEV---GQLEGLIGELDQFGPGSRIVVTTRDKGV-LEKFRGE 297 (349)
Q Consensus 222 ~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~---~~~~~l~~~~~~~~~gs~IIiTtR~~~~-~~~~~~~ 297 (349)
..+...... ..+...+-++|||+++.. .....+...+.....++++|+||..... ...+..
T Consensus 86 ~~l~~~~~~--------------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~s- 150 (316)
T PHA02544 86 NRLTRFAST--------------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRS- 150 (316)
T ss_pred HHHHHHHHh--------------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHh-
Confidence 111111000 001133557899999754 2223333334444567788888875432 121111
Q ss_pred CCcEEEcCCCCHHHHHHHHH
Q 037291 298 EKKIHRVNGLEFEEAFEHFC 317 (349)
Q Consensus 298 ~~~~~~l~~L~~~ea~~Lf~ 317 (349)
....+.++..+.++..+++.
T Consensus 151 R~~~i~~~~p~~~~~~~il~ 170 (316)
T PHA02544 151 RCRVIDFGVPTKEEQIEMMK 170 (316)
T ss_pred hceEEEeCCCCHHHHHHHHH
Confidence 23567887888888776654
No 69
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.65 E-value=1.1e-06 Score=86.14 Aligned_cols=181 Identities=15% Similarity=0.149 Sum_probs=105.9
Q ss_pred CCCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCC--c--c--eE--------------
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEF--D--G--SC-------------- 201 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f--~--~--~~-------------- 201 (349)
....+++|.+.-++.|..++..+ .-...+.++|+.|+||||+|+.+++.+.... . . .|
T Consensus 10 ~~f~eivGq~~i~~~L~~~i~~~--r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~ 87 (584)
T PRK14952 10 ATFAEVVGQEHVTEPLSSALDAG--RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSI 87 (584)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCc
Confidence 44578999999999999988754 2234568999999999999999998754211 0 0 00
Q ss_pred EEEeccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCCh--hHHHHHhcccCCCCCCc
Q 037291 202 FMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEV--GQLEGLIGELDQFGPGS 279 (349)
Q Consensus 202 ~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs 279 (349)
-+..+...+ ..+...+ +++...+. ..-..+++-++|+|+++.. ...+.|+..+.......
T Consensus 88 dvieidaas--~~gvd~i-Rel~~~~~---------------~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~ 149 (584)
T PRK14952 88 DVVELDAAS--HGGVDDT-RELRDRAF---------------YAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHL 149 (584)
T ss_pred eEEEecccc--ccCHHHH-HHHHHHHH---------------hhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCe
Confidence 000000000 0111111 11111100 0011245568899999743 55777777777655666
Q ss_pred EEEEEeC-ChhHHHhcCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCc
Q 037291 280 RIVVTTR-DKGVLEKFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNP 345 (349)
Q Consensus 280 ~IIiTtR-~~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~P 345 (349)
.+|++|. ...+...+.. ....+++.+++.++..+.+.+.+-..+...+ .+....|++.++|.+
T Consensus 150 ~fIL~tte~~kll~TI~S-Rc~~~~F~~l~~~~i~~~L~~i~~~egi~i~--~~al~~Ia~~s~Gdl 213 (584)
T PRK14952 150 IFIFATTEPEKVLPTIRS-RTHHYPFRLLPPRTMRALIARICEQEGVVVD--DAVYPLVIRAGGGSP 213 (584)
T ss_pred EEEEEeCChHhhHHHHHH-hceEEEeeCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCH
Confidence 6665554 4444433211 3578999999999998888776643332111 234566777888765
No 70
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.64 E-value=3.7e-07 Score=92.76 Aligned_cols=171 Identities=15% Similarity=0.195 Sum_probs=93.6
Q ss_pred HHHHHHHhhhhcccccccccCCCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcC-----
Q 037291 122 LVNKIVEDVLKNLEKITVATDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGE----- 196 (349)
Q Consensus 122 ~i~~iv~~v~~~l~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~----- 196 (349)
.+.+...+...+..+ ...+.++||+.+++.+.+.|... ...-+.++|++|+|||+||+.+++++...
T Consensus 164 ~l~~~~~~l~~~~r~-----~~l~~~igr~~ei~~~~~~L~~~---~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~ 235 (731)
T TIGR02639 164 ALEKYTVDLTEKAKN-----GKIDPLIGREDELERTIQVLCRR---KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPEN 235 (731)
T ss_pred HHHHHhhhHHHHHhc-----CCCCcccCcHHHHHHHHHHHhcC---CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchh
Confidence 444444444444432 23357999999999999988765 34456799999999999999999987432
Q ss_pred C-cceEEEEeccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCCh-----------hH
Q 037291 197 F-DGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEV-----------GQ 264 (349)
Q Consensus 197 f-~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~-----------~~ 264 (349)
+ ...+|..+... +... ....+ .-.+.+...+.+.-..++.+|++|+++.. +.
T Consensus 236 l~~~~~~~~~~~~----------l~a~--~~~~g----~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~ 299 (731)
T TIGR02639 236 LKNAKIYSLDMGS----------LLAG--TKYRG----DFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDA 299 (731)
T ss_pred hcCCeEEEecHHH----------Hhhh--ccccc----hHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHH
Confidence 1 23333332111 1100 00000 00011111222222345789999999632 11
Q ss_pred HHHHhcccCCCCCC-cEEEEEeCChhHH------HhcCCCCCcEEEcCCCCHHHHHHHHHhhh
Q 037291 265 LEGLIGELDQFGPG-SRIVVTTRDKGVL------EKFRGEEKKIHRVNGLEFEEAFEHFCNFA 320 (349)
Q Consensus 265 ~~~l~~~~~~~~~g-s~IIiTtR~~~~~------~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 320 (349)
.+.+.+.+. .| -++|-+|...... ..+.. ....+++++++.++..+++....
T Consensus 300 ~~~L~~~l~---~g~i~~IgaTt~~e~~~~~~~d~al~r-Rf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 300 SNLLKPALS---SGKLRCIGSTTYEEYKNHFEKDRALSR-RFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHHHHh---CCCeEEEEecCHHHHHHHhhhhHHHHH-hCceEEeCCCCHHHHHHHHHHHH
Confidence 223333332 33 3455444432210 01110 23579999999999999998544
No 71
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=98.63 E-value=4.7e-09 Score=79.45 Aligned_cols=57 Identities=30% Similarity=0.490 Sum_probs=48.7
Q ss_pred CcccccCCccccHHHHHHHhhCceEEEEecCCCCCchhhHHHHHHHHHhhhhCCCeEEEEee
Q 037291 2 DDEKLRRGDEISDALLNAIQGSKISVVIFSKDYGSSKWCLNELVKILECKHTNRQIIIPVFY 63 (349)
Q Consensus 2 d~~~~~~g~~~~~~i~~ai~~s~~~ivv~S~~y~~S~~cl~El~~i~~~~~~~~~~vlPvfy 63 (349)
|. ++..|+++.+.|.++|++|+..|+++|++|..|.||..|+..+. ..+..|+||..
T Consensus 30 d~-~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~----~~~~~iipv~~ 86 (102)
T PF13676_consen 30 DR-DIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAW----KRGKPIIPVRL 86 (102)
T ss_dssp GG-EE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHH----CTSESEEEEEC
T ss_pred EE-eCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHH----HCCCEEEEEEE
Confidence 54 88999999999999999999999999999999999999988773 34458999974
No 72
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.62 E-value=8.8e-07 Score=90.07 Aligned_cols=183 Identities=14% Similarity=0.102 Sum_probs=105.4
Q ss_pred CCCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCc--c-eEEEE--------------
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFD--G-SCFMS-------------- 204 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~--~-~~~~~-------------- 204 (349)
....++||.+..++.|...+... .-...+.++|+.|+||||+|+.+++.+..... . -|=.+
T Consensus 12 ~~f~eiiGqe~v~~~L~~~i~~~--ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~ 89 (824)
T PRK07764 12 ATFAEVIGQEHVTEPLSTALDSG--RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSL 89 (824)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhC--CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCC
Confidence 34467999999999999888764 22355789999999999999999987632100 0 00000
Q ss_pred ecccccc-CCCChHHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCCh--hHHHHHhcccCCCCCCcEE
Q 037291 205 DVRRNSE-TGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEV--GQLEGLIGELDQFGPGSRI 281 (349)
Q Consensus 205 ~~~~~~~-~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~I 281 (349)
++.++.. ...++.++ +.+...+ ...-..++.-++|||+++.+ ...+.|+..+......+.+
T Consensus 90 dv~eidaas~~~Vd~i-R~l~~~~---------------~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~f 153 (824)
T PRK07764 90 DVTEIDAASHGGVDDA-RELRERA---------------FFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKF 153 (824)
T ss_pred cEEEecccccCCHHHH-HHHHHHH---------------HhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEE
Confidence 0000000 00111111 1111110 00112345567889999754 4567777777765667766
Q ss_pred EEEeCC-hhHHHhcCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCc
Q 037291 282 VVTTRD-KGVLEKFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNP 345 (349)
Q Consensus 282 IiTtR~-~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~P 345 (349)
|++|.+ ..++..+.. ....|++..++.++..+++.+.+-.++... ..+....|++.++|.+
T Consensus 154 Il~tt~~~kLl~TIrS-Rc~~v~F~~l~~~~l~~~L~~il~~EGv~i--d~eal~lLa~~sgGdl 215 (824)
T PRK07764 154 IFATTEPDKVIGTIRS-RTHHYPFRLVPPEVMRGYLERICAQEGVPV--EPGVLPLVIRAGGGSV 215 (824)
T ss_pred EEEeCChhhhhHHHHh-heeEEEeeCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCH
Confidence 666644 344433221 457899999999999888877653222111 1234566777777765
No 73
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.62 E-value=4.9e-07 Score=89.24 Aligned_cols=188 Identities=14% Similarity=0.163 Sum_probs=112.3
Q ss_pred CCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHH
Q 037291 143 SSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKE 222 (349)
Q Consensus 143 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 222 (349)
...+.|-|..-+..+. . ..+.+.+.|..|+|.|||||+.+++.. ...-..+.|+. ......+..++...
T Consensus 17 ~~~~~v~R~rL~~~L~----~--~~~~RL~li~APAGfGKttl~aq~~~~-~~~~~~v~Wls----lde~dndp~rF~~y 85 (894)
T COG2909 17 RPDNYVVRPRLLDRLR----R--ANDYRLILISAPAGFGKTTLLAQWREL-AADGAAVAWLS----LDESDNDPARFLSY 85 (894)
T ss_pred CcccccccHHHHHHHh----c--CCCceEEEEeCCCCCcHHHHHHHHHHh-cCcccceeEee----cCCccCCHHHHHHH
Confidence 3456666765444443 2 246899999999999999999999883 33445688987 55546788888888
Q ss_pred HHHHhhcccccccC-----------CCchHHHHHH---h--CCCeEEEEEeCCC---ChhHHHHHhcccCCCCCCcEEEE
Q 037291 223 MLSTILSEKLEVAG-----------ANIPHFTKER---V--WRMKVLIVLDDVN---EVGQLEGLIGELDQFGPGSRIVV 283 (349)
Q Consensus 223 ll~~~~~~~~~~~~-----------~~~~~~~~~~---l--~~k~~LlVlDdv~---~~~~~~~l~~~~~~~~~gs~IIi 283 (349)
++..+....+...+ ..+...+... + -.+++.+||||.. +..--..+...+....++-.+|+
T Consensus 86 Li~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv 165 (894)
T COG2909 86 LIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVV 165 (894)
T ss_pred HHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEE
Confidence 88887643332211 1221222222 2 2468999999994 33222222222333356889999
Q ss_pred EeCChhHHHhcCC-CCCcEEEcC----CCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCcc
Q 037291 284 TTRDKGVLEKFRG-EEKKIHRVN----GLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNPL 346 (349)
Q Consensus 284 TtR~~~~~~~~~~-~~~~~~~l~----~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL 346 (349)
|||...-+..-.. -.+...++. .|+.+|+.++|...... +-+ ...++.+.+.++|=+=
T Consensus 166 ~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l---~Ld--~~~~~~L~~~teGW~~ 228 (894)
T COG2909 166 TSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSL---PLD--AADLKALYDRTEGWAA 228 (894)
T ss_pred EeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCC---CCC--hHHHHHHHhhcccHHH
Confidence 9998642211100 012333333 47899999999876521 111 1235667777776443
No 74
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.62 E-value=1.5e-06 Score=89.30 Aligned_cols=191 Identities=17% Similarity=0.148 Sum_probs=104.0
Q ss_pred HHHHHHHhhhhcccccccccCCCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCC----
Q 037291 122 LVNKIVEDVLKNLEKITVATDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEF---- 197 (349)
Q Consensus 122 ~i~~iv~~v~~~l~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f---- 197 (349)
.+++...+...+..+ ...+.++||+.++.++...|... ....+.|+|++|+||||||+.+++++....
T Consensus 169 ~l~~~~~~L~~~~r~-----~~ld~~iGr~~ei~~~i~~l~r~---~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~ 240 (852)
T TIGR03345 169 ALDQYTTDLTAQARE-----GKIDPVLGRDDEIRQMIDILLRR---RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPA 240 (852)
T ss_pred hHHHHhhhHHHHhcC-----CCCCcccCCHHHHHHHHHHHhcC---CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCcc
Confidence 444444444444332 33467999999999999988765 344556999999999999999999874331
Q ss_pred --cceEEEEeccccccC---CCChHHHHHHHHHHhhcccccccCCCchHHHHHHh-CCCeEEEEEeCCCChh-------H
Q 037291 198 --DGSCFMSDVRRNSET---GGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERV-WRMKVLIVLDDVNEVG-------Q 264 (349)
Q Consensus 198 --~~~~~~~~~~~~~~~---~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l-~~k~~LlVlDdv~~~~-------~ 264 (349)
...+|..+....... ...+..-++.+ +.+.. .+++++|++|+++... +
T Consensus 241 l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~i-------------------i~e~~~~~~~~ILfIDEih~l~~~g~~~~~ 301 (852)
T TIGR03345 241 LRNVRLLSLDLGLLQAGASVKGEFENRLKSV-------------------IDEVKASPQPIILFIDEAHTLIGAGGQAGQ 301 (852)
T ss_pred ccCCeEEEeehhhhhcccccchHHHHHHHHH-------------------HHHHHhcCCCeEEEEeChHHhccCCCcccc
Confidence 123333322221100 00111111111 11111 2468999999995431 1
Q ss_pred HH---HHhcccCCCCCC-cEEEEEeCChhHHH-------hcCCCCCcEEEcCCCCHHHHHHHHHhhhcC--CCCCCchHH
Q 037291 265 LE---GLIGELDQFGPG-SRIVVTTRDKGVLE-------KFRGEEKKIHRVNGLEFEEAFEHFCNFAFK--ENHCPTNLN 331 (349)
Q Consensus 265 ~~---~l~~~~~~~~~g-s~IIiTtR~~~~~~-------~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~--~~~~~~~~~ 331 (349)
.+ .+.+.+ ..| -++|-||.....-. ... ....+.+++++.+++.+++....-. ..+...-..
T Consensus 302 ~d~~n~Lkp~l---~~G~l~~IgaTT~~e~~~~~~~d~AL~r--Rf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d 376 (852)
T TIGR03345 302 GDAANLLKPAL---ARGELRTIAATTWAEYKKYFEKDPALTR--RFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILD 376 (852)
T ss_pred ccHHHHhhHHh---hCCCeEEEEecCHHHHhhhhhccHHHHH--hCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCH
Confidence 11 233333 233 45665555432200 011 3368999999999999997543311 111111123
Q ss_pred HHHHHHHHHhcCC
Q 037291 332 WHSRRVVEYAKGN 344 (349)
Q Consensus 332 ~~~~~i~~~~~G~ 344 (349)
+....+++.+.+.
T Consensus 377 ~al~~~~~ls~ry 389 (852)
T TIGR03345 377 EAVVAAVELSHRY 389 (852)
T ss_pred HHHHHHHHHcccc
Confidence 4556677766654
No 75
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.60 E-value=2.7e-08 Score=90.75 Aligned_cols=170 Identities=21% Similarity=0.235 Sum_probs=112.3
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHHHh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERV 247 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l 247 (349)
..+.+.++|.|||||||++-++.+ +...|....++.+...++. . ..+...+...+.-... +.+.....+....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD-~---~~v~~~~ag~~gl~~~--~g~~~~~~~~~~~ 85 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITD-P---ALVFPTLAGALGLHVQ--PGDSAVDTLVRRI 85 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCc-h---hHhHHHHHhhcccccc--cchHHHHHHHHHH
Confidence 358899999999999999999999 8889998888887777665 1 1111111121211111 1122225666777
Q ss_pred CCCeEEEEEeCCCCh-hHHHHHhcccCCCCCCcEEEEEeCChhHHHhcCCCCCcEEEcCCCCHH-HHHHHHHhhhcCCC-
Q 037291 248 WRMKVLIVLDDVNEV-GQLEGLIGELDQFGPGSRIVVTTRDKGVLEKFRGEEKKIHRVNGLEFE-EAFEHFCNFAFKEN- 324 (349)
Q Consensus 248 ~~k~~LlVlDdv~~~-~~~~~l~~~~~~~~~gs~IIiTtR~~~~~~~~~~~~~~~~~l~~L~~~-ea~~Lf~~~a~~~~- 324 (349)
.+++.++|+||.... ++-..+.-.+....+.-.|+.|+|.... ......+.+++|+.. ++.++|...+....
T Consensus 86 ~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l-----~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~ 160 (414)
T COG3903 86 GDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL-----VAGEVHRRVPSLSLFDEAIELFVCRAVLVAL 160 (414)
T ss_pred hhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc-----ccccccccCCccccCCchhHHHHHHHHHhcc
Confidence 888999999999654 3334444444444566689999995433 225678888888876 78999876663211
Q ss_pred --CCCchHHHHHHHHHHHhcCCccccC
Q 037291 325 --HCPTNLNWHSRRVVEYAKGNPLVLK 349 (349)
Q Consensus 325 --~~~~~~~~~~~~i~~~~~G~PLalk 349 (349)
............|.+...|.||+|+
T Consensus 161 ~f~l~~~~~a~v~~icr~ldg~~laie 187 (414)
T COG3903 161 SFWLTDDNAAAVAEICRRLDGIPLAIE 187 (414)
T ss_pred ceeecCCchHHHHHHHHHhhcchHHHH
Confidence 1122233457889999999999874
No 76
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.59 E-value=1.3e-06 Score=83.33 Aligned_cols=155 Identities=16% Similarity=0.193 Sum_probs=88.5
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhhcCCc--ceEEEEeccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHHH
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFTGEFD--GSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKER 246 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~ 246 (349)
...+.|+|++|+|||+|++.+++.+...+. .+.|+. ..++...+...+.... . ..+.+.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~-----------~~~f~~~~~~~~~~~~-------~-~~f~~~ 190 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT-----------SEKFLNDLVDSMKEGK-------L-NEFREK 190 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHHHHHHHHHhccc-------H-HHHHHH
Confidence 455889999999999999999998765543 234443 1234444444432211 1 233333
Q ss_pred hCCCeEEEEEeCCCCh---hHH-HHHhcccCCC-CCCcEEEEEeC-ChhHHHhcC------CCCCcEEEcCCCCHHHHHH
Q 037291 247 VWRMKVLIVLDDVNEV---GQL-EGLIGELDQF-GPGSRIVVTTR-DKGVLEKFR------GEEKKIHRVNGLEFEEAFE 314 (349)
Q Consensus 247 l~~k~~LlVlDdv~~~---~~~-~~l~~~~~~~-~~gs~IIiTtR-~~~~~~~~~------~~~~~~~~l~~L~~~ea~~ 314 (349)
...+.-+|+|||++.. ... +.+...+... ..+..||+||. ++.-+..+. .....++++++.+.+.-..
T Consensus 191 ~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~ 270 (440)
T PRK14088 191 YRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKK 270 (440)
T ss_pred HHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHH
Confidence 3334568999999633 111 2232222211 23456888874 443222210 0134688999999999999
Q ss_pred HHHhhhcCCCCCCchHHHHHHHHHHHhcCC
Q 037291 315 HFCNFAFKENHCPTNLNWHSRRVVEYAKGN 344 (349)
Q Consensus 315 Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~ 344 (349)
++.+.+-..+... ..+.+..|++.+.|.
T Consensus 271 IL~~~~~~~~~~l--~~ev~~~Ia~~~~~~ 298 (440)
T PRK14088 271 IARKMLEIEHGEL--PEEVLNFVAENVDDN 298 (440)
T ss_pred HHHHHHHhcCCCC--CHHHHHHHHhccccC
Confidence 9988774322111 234566666666654
No 77
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.59 E-value=1.2e-06 Score=86.26 Aligned_cols=191 Identities=16% Similarity=0.185 Sum_probs=108.8
Q ss_pred CCCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCc-c--eEEEEeccccccCCCChHH
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFD-G--SCFMSDVRRNSETGGGLEH 218 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~-~--~~~~~~~~~~~~~~~~~~~ 218 (349)
.....++|.+..++.|...+..+ .-...+.++|+.|+||||+|+.+++.+..... . ..-+. ..+.-.
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~g--ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~--------~cg~c~ 90 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFETG--RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID--------LCGVGE 90 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC--CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc--------cCcccH
Confidence 44578999999999999988765 23456889999999999999999987632211 0 00000 000000
Q ss_pred HHHHHHHHhhcccccc---cCCCchHHHHH---H-----hCCCeEEEEEeCCCCh--hHHHHHhcccCCCCCCcEEEEEe
Q 037291 219 LQKEMLSTILSEKLEV---AGANIPHFTKE---R-----VWRMKVLIVLDDVNEV--GQLEGLIGELDQFGPGSRIVVTT 285 (349)
Q Consensus 219 l~~~ll~~~~~~~~~~---~~~~~~~~~~~---~-----l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTt 285 (349)
-...+.......-... ....+ +.+++ . +.+++-++|+|+++.. ...+.|+..+....+.+.+|++|
T Consensus 91 ~C~~i~~g~h~Dv~e~~a~s~~gv-d~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 91 HCQAIMEGRHVDVLEMDAASHTGV-DDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred HHHHHhcCCCCceEEecccccCCH-HHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 0111111000000000 00001 11111 1 1234557899999754 45677777776555667776655
Q ss_pred -CChhHHHhcCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCcc
Q 037291 286 -RDKGVLEKFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNPL 346 (349)
Q Consensus 286 -R~~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL 346 (349)
....+...+.. ....+++.+++.++....+.+.+-.++.... .+.+..|++.++|.+.
T Consensus 170 te~~kll~tI~S-Rcq~~~f~~l~~~el~~~L~~i~~kegi~i~--~eAl~lIa~~a~Gdlr 228 (598)
T PRK09111 170 TEIRKVPVTVLS-RCQRFDLRRIEADVLAAHLSRIAAKEGVEVE--DEALALIARAAEGSVR 228 (598)
T ss_pred CChhhhhHHHHh-heeEEEecCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHH
Confidence 33344333211 3468999999999999988887643332211 2456778888888764
No 78
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.59 E-value=1.2e-06 Score=85.77 Aligned_cols=178 Identities=13% Similarity=0.101 Sum_probs=104.5
Q ss_pred CCCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCc---------------------ce
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFD---------------------GS 200 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~---------------------~~ 200 (349)
....+++|-+..++.|...+... .-...+.++|+.|+||||+|+.+++.+-.... ..
T Consensus 13 ~sf~dIiGQe~v~~~L~~ai~~~--ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv 90 (624)
T PRK14959 13 QTFAEVAGQETVKAILSRAAQEN--RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDV 90 (624)
T ss_pred CCHHHhcCCHHHHHHHHHHHHcC--CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCce
Confidence 34467899888888888878654 22467789999999999999999987632110 01
Q ss_pred EEEEeccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCCh--hHHHHHhcccCCCCCC
Q 037291 201 CFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEV--GQLEGLIGELDQFGPG 278 (349)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~g 278 (349)
.++. ... ..++..+ +.+...+. ..-..+++-++|||+++.. ...+.|+..+......
T Consensus 91 ~eId----~a~-~~~Id~i-R~L~~~~~---------------~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~ 149 (624)
T PRK14959 91 VEID----GAS-NRGIDDA-KRLKEAIG---------------YAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPAR 149 (624)
T ss_pred EEEe----ccc-ccCHHHH-HHHHHHHH---------------hhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCC
Confidence 1111 000 1111111 11111100 0012345678999999754 4566777666544455
Q ss_pred cEEEEEeCC-hhHHHhcCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCc
Q 037291 279 SRIVVTTRD-KGVLEKFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNP 345 (349)
Q Consensus 279 s~IIiTtR~-~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~P 345 (349)
..+|++|.+ ..+...+.. ....+++.+++.++....+...+....... ..+.++.|++.++|.+
T Consensus 150 ~ifILaTt~~~kll~TI~S-Rcq~i~F~pLs~~eL~~~L~~il~~egi~i--d~eal~lIA~~s~Gdl 214 (624)
T PRK14959 150 VTFVLATTEPHKFPVTIVS-RCQHFTFTRLSEAGLEAHLTKVLGREGVDY--DPAAVRLIARRAAGSV 214 (624)
T ss_pred EEEEEecCChhhhhHHHHh-hhhccccCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCH
Confidence 666666655 344322211 346889999999999988887664433211 1245677888888754
No 79
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.57 E-value=7.4e-07 Score=79.38 Aligned_cols=134 Identities=13% Similarity=0.141 Sum_probs=71.3
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcCC--cceEEEEeccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHH
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGEF--DGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKE 245 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~ 245 (349)
....+.++|++|+||||+|+.+++.+...- ....++. ... .++ .....+.. ...+...+.+
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~----~~~-----~~l----~~~~~g~~----~~~~~~~~~~ 103 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIE----VER-----ADL----VGEYIGHT----AQKTREVIKK 103 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEE----ecH-----HHh----hhhhccch----HHHHHHHHHh
Confidence 456778999999999999999998653211 1111221 110 111 11111100 0011122222
Q ss_pred HhCCCeEEEEEeCCCCh----------hHHHHHhcccCCCCCCcEEEEEeCChhH--HH----hcCCCCCcEEEcCCCCH
Q 037291 246 RVWRMKVLIVLDDVNEV----------GQLEGLIGELDQFGPGSRIVVTTRDKGV--LE----KFRGEEKKIHRVNGLEF 309 (349)
Q Consensus 246 ~l~~k~~LlVlDdv~~~----------~~~~~l~~~~~~~~~gs~IIiTtR~~~~--~~----~~~~~~~~~~~l~~L~~ 309 (349)
. ..-+|+||+++.. +.++.++..+........+|+++..... .. .+.......+++++++.
T Consensus 104 a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~ 180 (261)
T TIGR02881 104 A---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTV 180 (261)
T ss_pred c---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCH
Confidence 1 1348899999642 2455566555544344455666543322 00 11111235689999999
Q ss_pred HHHHHHHHhhhc
Q 037291 310 EEAFEHFCNFAF 321 (349)
Q Consensus 310 ~ea~~Lf~~~a~ 321 (349)
+|..+++.+.+-
T Consensus 181 ~el~~Il~~~~~ 192 (261)
T TIGR02881 181 EELMEIAERMVK 192 (261)
T ss_pred HHHHHHHHHHHH
Confidence 999999987764
No 80
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.56 E-value=2.1e-06 Score=82.15 Aligned_cols=180 Identities=15% Similarity=0.210 Sum_probs=104.2
Q ss_pred CCCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCC-------cceE-------------
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEF-------DGSC------------- 201 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f-------~~~~------------- 201 (349)
.....++|.+..++.+...+... .-...+.++|+.|+||||+|+.+++.+...- .+.|
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~~--~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRFN--RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC--CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 44568999999999998888754 1245678999999999999999998753210 0000
Q ss_pred EEEeccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCCh--hHHHHHhcccCCCCCCc
Q 037291 202 FMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEV--GQLEGLIGELDQFGPGS 279 (349)
Q Consensus 202 ~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs 279 (349)
|+. +...+ ..+...+ +++...+. .....+.+-++|+|+++.. ...+.|...+.......
T Consensus 92 ~~~-i~g~~--~~gid~i-r~i~~~l~---------------~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~ 152 (451)
T PRK06305 92 VLE-IDGAS--HRGIEDI-RQINETVL---------------FTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHV 152 (451)
T ss_pred eEE-eeccc--cCCHHHH-HHHHHHHH---------------hhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCc
Confidence 111 00000 1111111 11111100 0001245668899999644 34566666666545566
Q ss_pred EEEEEeCCh-hHHHhcCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCc
Q 037291 280 RIVVTTRDK-GVLEKFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNP 345 (349)
Q Consensus 280 ~IIiTtR~~-~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~P 345 (349)
.+|++|.+. .+...+.. ....+++.+++.++....+...+-..+... ..+.++.+++.++|.+
T Consensus 153 ~~Il~t~~~~kl~~tI~s-Rc~~v~f~~l~~~el~~~L~~~~~~eg~~i--~~~al~~L~~~s~gdl 216 (451)
T PRK06305 153 KFFLATTEIHKIPGTILS-RCQKMHLKRIPEETIIDKLALIAKQEGIET--SREALLPIARAAQGSL 216 (451)
T ss_pred eEEEEeCChHhcchHHHH-hceEEeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCH
Confidence 677666433 33222110 346899999999999888877653322111 1245677888888864
No 81
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.55 E-value=1.1e-06 Score=84.42 Aligned_cols=154 Identities=16% Similarity=0.175 Sum_probs=87.7
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcCCcc--eEEEEeccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHH
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDG--SCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKE 245 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~ 245 (349)
....+.|+|++|+|||+|++.+++.+...+.. +.|+. ...+...+...+... .. ..+.+
T Consensus 147 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~-----------~~~~~~~~~~~~~~~-------~~-~~~~~ 207 (450)
T PRK00149 147 AYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT-----------SEKFTNDFVNALRNN-------TM-EEFKE 207 (450)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHHHHHHHHHHcC-------cH-HHHHH
Confidence 34668899999999999999999988766432 33443 122333333333211 11 23333
Q ss_pred HhCCCeEEEEEeCCCCh---h-HHHHHhcccCCC-CCCcEEEEEeCCh-hH--------HHhcCCCCCcEEEcCCCCHHH
Q 037291 246 RVWRMKVLIVLDDVNEV---G-QLEGLIGELDQF-GPGSRIVVTTRDK-GV--------LEKFRGEEKKIHRVNGLEFEE 311 (349)
Q Consensus 246 ~l~~k~~LlVlDdv~~~---~-~~~~l~~~~~~~-~~gs~IIiTtR~~-~~--------~~~~~~~~~~~~~l~~L~~~e 311 (349)
.+. +.-+|||||++.. . ..+.+...+... ..+..+|+||... .. ...+. ....+++++++.++
T Consensus 208 ~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~--~gl~v~i~~pd~~~ 284 (450)
T PRK00149 208 KYR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFE--WGLTVDIEPPDLET 284 (450)
T ss_pred HHh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhc--CCeeEEecCCCHHH
Confidence 444 3448999999532 1 122333322211 2345577777543 21 22222 34689999999999
Q ss_pred HHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCc
Q 037291 312 AFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNP 345 (349)
Q Consensus 312 a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~P 345 (349)
-.+++...+-..+.. -.++.+..|++.+.|..
T Consensus 285 r~~il~~~~~~~~~~--l~~e~l~~ia~~~~~~~ 316 (450)
T PRK00149 285 RIAILKKKAEEEGID--LPDEVLEFIAKNITSNV 316 (450)
T ss_pred HHHHHHHHHHHcCCC--CCHHHHHHHHcCcCCCH
Confidence 999999887432211 12244566666666543
No 82
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.55 E-value=2.1e-06 Score=84.64 Aligned_cols=195 Identities=12% Similarity=0.110 Sum_probs=104.3
Q ss_pred CCCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcC--CcceEEEEeccccccCCCChHHH
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGE--FDGSCFMSDVRRNSETGGGLEHL 219 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~l 219 (349)
.....++|-+.-++.|...+..+ .-...+.++|+.|+||||+|+.+++.+-.. .....|.......+. -=..
T Consensus 13 ~~f~eivGQe~i~~~L~~~i~~~--ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg----~C~s 86 (620)
T PRK14954 13 SKFADITAQEHITHTIQNSLRMD--RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCG----ECES 86 (620)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC--CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCc----cCHH
Confidence 44578999998888888888654 223557899999999999999999876321 110011111000000 0000
Q ss_pred HHHHHHHhhccc---ccccC---CCchHHHHH----HhCCCeEEEEEeCCCCh--hHHHHHhcccCCCCCCcEEEEEeC-
Q 037291 220 QKEMLSTILSEK---LEVAG---ANIPHFTKE----RVWRMKVLIVLDDVNEV--GQLEGLIGELDQFGPGSRIVVTTR- 286 (349)
Q Consensus 220 ~~~ll~~~~~~~---~~~~~---~~~~~~~~~----~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTtR- 286 (349)
...+.......- ..... +.+...... -..+.+-++|+|+++.. ...+.|+..+......+.+|++|.
T Consensus 87 C~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~ 166 (620)
T PRK14954 87 CRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTE 166 (620)
T ss_pred HHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 001000000000 00000 111111111 12334557899999755 346677777765555666665554
Q ss_pred ChhHHHhcCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCc
Q 037291 287 DKGVLEKFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNP 345 (349)
Q Consensus 287 ~~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~P 345 (349)
...+...+. .....+++.+++.++....+.+.+-..+... ..+.++.+++.++|..
T Consensus 167 ~~kLl~TI~-SRc~~vef~~l~~~ei~~~L~~i~~~egi~I--~~eal~~La~~s~Gdl 222 (620)
T PRK14954 167 LHKIPATIA-SRCQRFNFKRIPLDEIQSQLQMICRAEGIQI--DADALQLIARKAQGSM 222 (620)
T ss_pred hhhhhHHHH-hhceEEecCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHhCCCH
Confidence 344433321 1457899999999998888876553322111 1234677778887753
No 83
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.54 E-value=2.7e-06 Score=81.98 Aligned_cols=178 Identities=11% Similarity=0.094 Sum_probs=103.9
Q ss_pred CCCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcC---C-c-c----------------e
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGE---F-D-G----------------S 200 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~---f-~-~----------------~ 200 (349)
.....++|-+.-++.+...+... .-...+.++|+.|+||||+|+.++..+... . . + .
T Consensus 13 ~~f~diiGq~~i~~~L~~~i~~~--~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 13 KFFKEVIGQEIVVRILKNAVKLQ--RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred CcHHHccChHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 34467899999999998888764 224556789999999999999999875311 0 0 0 0
Q ss_pred EEEEeccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHH-HhCCCeEEEEEeCCCCh--hHHHHHhcccCCCCC
Q 037291 201 CFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKE-RVWRMKVLIVLDDVNEV--GQLEGLIGELDQFGP 277 (349)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~-~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~ 277 (349)
..+. ... ..+...+ +.+.. .+.. -..+++-++|+|+++.. ...+.++..+....+
T Consensus 91 ~eid----aas-~~gvd~i-r~I~~----------------~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~ 148 (486)
T PRK14953 91 IEID----AAS-NRGIDDI-RALRD----------------AVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPP 148 (486)
T ss_pred EEEe----Ccc-CCCHHHH-HHHHH----------------HHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCC
Confidence 0010 000 0111110 11111 0100 11345679999999754 345667666665455
Q ss_pred CcEEEEEeCC-hhHHHhcCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCcc
Q 037291 278 GSRIVVTTRD-KGVLEKFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNPL 346 (349)
Q Consensus 278 gs~IIiTtR~-~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL 346 (349)
...+|++|.+ ..+...+.. ....+++.+++.++....+...+-..+-.. ..+.+..+++.++|.+.
T Consensus 149 ~~v~Il~tt~~~kl~~tI~S-Rc~~i~f~~ls~~el~~~L~~i~k~egi~i--d~~al~~La~~s~G~lr 215 (486)
T PRK14953 149 RTIFILCTTEYDKIPPTILS-RCQRFIFSKPTKEQIKEYLKRICNEEKIEY--EEKALDLLAQASEGGMR 215 (486)
T ss_pred CeEEEEEECCHHHHHHHHHH-hceEEEcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHH
Confidence 5666655543 333322211 346899999999999888887653322111 12446778888888754
No 84
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.54 E-value=1.1e-06 Score=84.42 Aligned_cols=163 Identities=21% Similarity=0.305 Sum_probs=91.6
Q ss_pred CCCcccccchhhhHHHhhhhc----------CCCCeeEEEEeccCccchHHHHHHHHHhhhcCC-----cceEEEEeccc
Q 037291 144 SNGLVGLNSRIEQIKPFLCMD----------LSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEF-----DGSCFMSDVRR 208 (349)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~----------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f-----~~~~~~~~~~~ 208 (349)
...+.|.+..++++.+.+... .-...+-+.|+|++|+|||++|+.+++.+...+ ...+|+. +..
T Consensus 181 ~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~-v~~ 259 (512)
T TIGR03689 181 YADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN-IKG 259 (512)
T ss_pred HHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe-ccc
Confidence 456788999998888765421 012346688999999999999999999875442 2233442 111
Q ss_pred cccCCCChHHHHHHHHHHhhcccccccCCCchHHHHHH-hCCCeEEEEEeCCCChh--------------HHHHHhcccC
Q 037291 209 NSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKER-VWRMKVLIVLDDVNEVG--------------QLEGLIGELD 273 (349)
Q Consensus 209 ~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~-l~~k~~LlVlDdv~~~~--------------~~~~l~~~~~ 273 (349)
. .+ +....+..... -..+....++. ..+++++|+||+++... .+..++..+.
T Consensus 260 ~--------eL----l~kyvGete~~-ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LD 326 (512)
T TIGR03689 260 P--------EL----LNKYVGETERQ-IRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELD 326 (512)
T ss_pred h--------hh----cccccchHHHH-HHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhc
Confidence 0 00 00000000000 00011111111 23568999999996321 1234444443
Q ss_pred CCC--CCcEEEEEeCChhHHHhc--C-CCCCcEEEcCCCCHHHHHHHHHhhh
Q 037291 274 QFG--PGSRIVVTTRDKGVLEKF--R-GEEKKIHRVNGLEFEEAFEHFCNFA 320 (349)
Q Consensus 274 ~~~--~gs~IIiTtR~~~~~~~~--~-~~~~~~~~l~~L~~~ea~~Lf~~~a 320 (349)
... .+..||.||.....+... . ..-+..++++..+.++..++|..+.
T Consensus 327 gl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 327 GVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred ccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 322 345566677655443321 1 1135679999999999999998876
No 85
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.54 E-value=1.4e-06 Score=82.71 Aligned_cols=155 Identities=17% Similarity=0.194 Sum_probs=86.9
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhhcCCc--ceEEEEeccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHHH
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFTGEFD--GSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKER 246 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~ 246 (349)
...+.|+|++|+|||+|++.+++.+..... .++|+. ...+...+...+... .. ..+.+.
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~-----------~~~~~~~~~~~~~~~-------~~-~~~~~~ 196 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS-----------SEKFTNDFVNALRNN-------KM-EEFKEK 196 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE-----------HHHHHHHHHHHHHcC-------CH-HHHHHH
Confidence 456889999999999999999998765542 233443 122333444333221 11 233333
Q ss_pred hCCCeEEEEEeCCCChh----HHHHHhcccCCC-CCCcEEEEEeCC-hhHHHhcC------CCCCcEEEcCCCCHHHHHH
Q 037291 247 VWRMKVLIVLDDVNEVG----QLEGLIGELDQF-GPGSRIVVTTRD-KGVLEKFR------GEEKKIHRVNGLEFEEAFE 314 (349)
Q Consensus 247 l~~k~~LlVlDdv~~~~----~~~~l~~~~~~~-~~gs~IIiTtR~-~~~~~~~~------~~~~~~~~l~~L~~~ea~~ 314 (349)
+.. .-+|+|||++... ..+.+...+... ..+..+|+|+.. +..+..+. ......+++++.+.++-.+
T Consensus 197 ~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~ 275 (405)
T TIGR00362 197 YRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLA 275 (405)
T ss_pred HHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHH
Confidence 332 3488899996321 112233332211 234567777754 22222111 0123578999999999999
Q ss_pred HHHhhhcCCCCCCchHHHHHHHHHHHhcCCc
Q 037291 315 HFCNFAFKENHCPTNLNWHSRRVVEYAKGNP 345 (349)
Q Consensus 315 Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~P 345 (349)
++...+-..+... .++....|++.+.|.+
T Consensus 276 il~~~~~~~~~~l--~~e~l~~ia~~~~~~~ 304 (405)
T TIGR00362 276 ILQKKAEEEGLEL--PDEVLEFIAKNIRSNV 304 (405)
T ss_pred HHHHHHHHcCCCC--CHHHHHHHHHhcCCCH
Confidence 9988874322211 2345566666666654
No 86
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.53 E-value=3.6e-06 Score=81.39 Aligned_cols=183 Identities=14% Similarity=0.162 Sum_probs=107.7
Q ss_pred CCCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhc-CCcc--eEEEE------------ec
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTG-EFDG--SCFMS------------DV 206 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~-~f~~--~~~~~------------~~ 206 (349)
.....++|-+.-.+.|...+... .-.....++|+.|+||||+|+.+++.+-. .... -|..+ ++
T Consensus 11 ~~fdeiiGqe~v~~~L~~~I~~g--rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv 88 (535)
T PRK08451 11 KHFDELIGQESVSKTLSLALDNN--RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDI 88 (535)
T ss_pred CCHHHccCcHHHHHHHHHHHHcC--CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeE
Confidence 44567999998888888888654 23456689999999999999999987521 1100 00000 00
Q ss_pred cccccC-CCChHHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCCh--hHHHHHhcccCCCCCCcEEEE
Q 037291 207 RRNSET-GGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEV--GQLEGLIGELDQFGPGSRIVV 283 (349)
Q Consensus 207 ~~~~~~-~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIi 283 (349)
-+.... ..+...+. +++..... .-..+++-++|+|+++.. +..+.|+..+....+.+++|+
T Consensus 89 ~eldaas~~gId~IR-elie~~~~---------------~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL 152 (535)
T PRK08451 89 IEMDAASNRGIDDIR-ELIEQTKY---------------KPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFIL 152 (535)
T ss_pred EEeccccccCHHHHH-HHHHHHhh---------------CcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEE
Confidence 000000 11122211 11111000 001134668899999754 456777777766566777777
Q ss_pred EeCChh-HHHhcCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCc
Q 037291 284 TTRDKG-VLEKFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNP 345 (349)
Q Consensus 284 TtR~~~-~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~P 345 (349)
+|.+.. +...+.. ....+++.+++.++..+.+.+.+-..+-.. ..+.+..|++.++|.+
T Consensus 153 ~ttd~~kL~~tI~S-Rc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i--~~~Al~~Ia~~s~Gdl 212 (535)
T PRK08451 153 ATTDPLKLPATILS-RTQHFRFKQIPQNSIISHLKTILEKEGVSY--EPEALEILARSGNGSL 212 (535)
T ss_pred EECChhhCchHHHh-hceeEEcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCcH
Confidence 776642 2222211 356899999999999998877664333221 1245677888888866
No 87
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.52 E-value=3.7e-06 Score=83.28 Aligned_cols=190 Identities=13% Similarity=0.149 Sum_probs=108.6
Q ss_pred CCCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHH
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQK 221 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 221 (349)
....+++|-+.-++.|..++... .-...+.++|+.|+||||+|+.+++.+....... ... ..+.-...+
T Consensus 13 ~~~~eiiGq~~~~~~L~~~i~~~--~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~--------~~~-~c~~c~~c~ 81 (585)
T PRK14950 13 QTFAELVGQEHVVQTLRNAIAEG--RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP--------KGR-PCGTCEMCR 81 (585)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhC--CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC--------CCC-CCccCHHHH
Confidence 44568999999999888888754 2245568999999999999999998763211000 000 111111122
Q ss_pred HHHHHhhcccccc---cC---CCchHHHHHH-----hCCCeEEEEEeCCCCh--hHHHHHhcccCCCCCCcEEEEEeCCh
Q 037291 222 EMLSTILSEKLEV---AG---ANIPHFTKER-----VWRMKVLIVLDDVNEV--GQLEGLIGELDQFGPGSRIVVTTRDK 288 (349)
Q Consensus 222 ~ll~~~~~~~~~~---~~---~~~~~~~~~~-----l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTtR~~ 288 (349)
.+........... .. +.+ ..+.+. ...++-++|||+++.. ...+.|+..+......+.+|+++.+.
T Consensus 82 ~i~~~~~~d~~~i~~~~~~~vd~i-r~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~ 160 (585)
T PRK14950 82 AIAEGSAVDVIEMDAASHTSVDDA-REIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEV 160 (585)
T ss_pred HHhcCCCCeEEEEeccccCCHHHH-HHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCCh
Confidence 2221111100000 00 111 111111 1245678999999744 45677777666555566677666543
Q ss_pred -hHHHhcCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCcc
Q 037291 289 -GVLEKFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNPL 346 (349)
Q Consensus 289 -~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL 346 (349)
.+...+.. ....+++.+++.++....+...+...+... ..+.+..+++.++|.+.
T Consensus 161 ~kll~tI~S-R~~~i~f~~l~~~el~~~L~~~a~~egl~i--~~eal~~La~~s~Gdlr 216 (585)
T PRK14950 161 HKVPATILS-RCQRFDFHRHSVADMAAHLRKIAAAEGINL--EPGALEAIARAATGSMR 216 (585)
T ss_pred hhhhHHHHh-ccceeeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHH
Confidence 33332211 346789999999999888887764433211 12456788888888774
No 88
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.50 E-value=3.9e-06 Score=80.08 Aligned_cols=131 Identities=15% Similarity=0.161 Sum_probs=77.3
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHHHhC
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERVW 248 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~ 248 (349)
...+.|+|++|+|||+|++.+++.+......+.|+. ...+...+...+... .. ..++....
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~-----------~~~f~~~~~~~l~~~-------~~-~~f~~~~~ 201 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR-----------SELFTEHLVSAIRSG-------EM-QRFRQFYR 201 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee-----------HHHHHHHHHHHHhcc-------hH-HHHHHHcc
Confidence 356789999999999999999998765434445554 122333443333221 11 23333333
Q ss_pred CCeEEEEEeCCCChh----HHHHHhcccCCC-CCCcEEEEEeCC-hhH--------HHhcCCCCCcEEEcCCCCHHHHHH
Q 037291 249 RMKVLIVLDDVNEVG----QLEGLIGELDQF-GPGSRIVVTTRD-KGV--------LEKFRGEEKKIHRVNGLEFEEAFE 314 (349)
Q Consensus 249 ~k~~LlVlDdv~~~~----~~~~l~~~~~~~-~~gs~IIiTtR~-~~~--------~~~~~~~~~~~~~l~~L~~~ea~~ 314 (349)
..-+|++||+.... ..+.+...++.. ..|..||+||.. +.. ...+. ....+++.+++.++..+
T Consensus 202 -~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~--~Gl~~~l~~pd~e~r~~ 278 (445)
T PRK12422 202 -NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFE--WGIAIPLHPLTKEGLRS 278 (445)
T ss_pred -cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhc--CCeEEecCCCCHHHHHH
Confidence 34588899995321 122333222211 235578888754 222 22222 34788999999999999
Q ss_pred HHHhhhc
Q 037291 315 HFCNFAF 321 (349)
Q Consensus 315 Lf~~~a~ 321 (349)
++.+++-
T Consensus 279 iL~~k~~ 285 (445)
T PRK12422 279 FLERKAE 285 (445)
T ss_pred HHHHHHH
Confidence 9988774
No 89
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.48 E-value=2.1e-06 Score=88.44 Aligned_cols=149 Identities=17% Similarity=0.199 Sum_probs=85.2
Q ss_pred CCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcC-C-----cceEEEEeccccccC--C-CC
Q 037291 145 NGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGE-F-----DGSCFMSDVRRNSET--G-GG 215 (349)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~-f-----~~~~~~~~~~~~~~~--~-~~ 215 (349)
+.++||+.+++.+.+.|... ..+-+.++|++|+|||+||+.++.++... . ...+|..+....... . ..
T Consensus 179 ~~~igr~~ei~~~~~~L~r~---~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge 255 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRR---TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGE 255 (821)
T ss_pred CCCCCcHHHHHHHHHHHccc---ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccH
Confidence 46899999999999999865 33455699999999999999999976432 1 233444322211100 0 00
Q ss_pred hHHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCChh---------HHHHHh-cccCCCCCCcEEEEEe
Q 037291 216 LEHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEVG---------QLEGLI-GELDQFGPGSRIVVTT 285 (349)
Q Consensus 216 ~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~~---------~~~~l~-~~~~~~~~gs~IIiTt 285 (349)
+. +.+...+.+....++.+|++|+++... ....++ +.+. ...-++|.+|
T Consensus 256 ~e-------------------~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~--rg~l~~IgaT 314 (821)
T CHL00095 256 FE-------------------ERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA--RGELQCIGAT 314 (821)
T ss_pred HH-------------------HHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh--CCCcEEEEeC
Confidence 11 111122222223468899999995221 122222 2222 1223556555
Q ss_pred CChhHHH------hcCCCCCcEEEcCCCCHHHHHHHHHh
Q 037291 286 RDKGVLE------KFRGEEKKIHRVNGLEFEEAFEHFCN 318 (349)
Q Consensus 286 R~~~~~~------~~~~~~~~~~~l~~L~~~ea~~Lf~~ 318 (349)
.....-. .+. .....++++..+.++...++..
T Consensus 315 t~~ey~~~ie~D~aL~-rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 315 TLDEYRKHIEKDPALE-RRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred CHHHHHHHHhcCHHHH-hcceEEecCCCCHHHHHHHHHH
Confidence 5443211 111 1346789999999998888764
No 90
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.46 E-value=4e-06 Score=83.35 Aligned_cols=180 Identities=13% Similarity=0.197 Sum_probs=103.5
Q ss_pred CCCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcC-Ccc---eE------------EEEe
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGE-FDG---SC------------FMSD 205 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~-f~~---~~------------~~~~ 205 (349)
.....++|-+.-++.|...+... .-.+.+.++|+.|+||||+|+.+++.+-.. ... .| ++.
T Consensus 15 ~~f~dIiGQe~~v~~L~~aI~~~--rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvie- 91 (725)
T PRK07133 15 KTFDDIVGQDHIVQTLKNIIKSN--KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIE- 91 (725)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEE-
Confidence 44467899999999999888754 234566799999999999999999865321 100 00 000
Q ss_pred ccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCCh--hHHHHHhcccCCCCCCcEEEE
Q 037291 206 VRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEV--GQLEGLIGELDQFGPGSRIVV 283 (349)
Q Consensus 206 ~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIi 283 (349)
+...+ ..+... .+.+...+.. .-..+++-++|+|+++.. ..++.|+..+......+.+|+
T Consensus 92 idaas--n~~vd~-IReLie~~~~---------------~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifIL 153 (725)
T PRK07133 92 MDAAS--NNGVDE-IRELIENVKN---------------LPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFIL 153 (725)
T ss_pred Eeccc--cCCHHH-HHHHHHHHHh---------------chhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEE
Confidence 00000 001111 1111111000 012345668899999744 456777776665445555554
Q ss_pred Ee-CChhHHHhcCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCc
Q 037291 284 TT-RDKGVLEKFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNP 345 (349)
Q Consensus 284 Tt-R~~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~P 345 (349)
+| +...+...+.. ....+++.+++.++..+.+...+-..+-.. ..+.+..+++.++|.+
T Consensus 154 aTte~~KLl~TI~S-Rcq~ieF~~L~~eeI~~~L~~il~kegI~i--d~eAl~~LA~lS~Gsl 213 (725)
T PRK07133 154 ATTEVHKIPLTILS-RVQRFNFRRISEDEIVSRLEFILEKENISY--EKNALKLIAKLSSGSL 213 (725)
T ss_pred EcCChhhhhHHHHh-hceeEEccCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCH
Confidence 44 44444433211 346899999999999988877553322111 1234667788887754
No 91
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.45 E-value=6.8e-06 Score=80.76 Aligned_cols=189 Identities=13% Similarity=0.124 Sum_probs=105.5
Q ss_pred CCCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHH
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQK 221 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 221 (349)
.....++|.+..++.+...+... .-.+.+.++|+.|+||||+|+.+++.+-..-... .. ..+.-....
T Consensus 13 ~~f~~viGq~~v~~~L~~~i~~~--~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~------~~----pC~~C~~C~ 80 (559)
T PRK05563 13 QTFEDVVGQEHITKTLKNAIKQG--KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD------GE----PCNECEICK 80 (559)
T ss_pred CcHHhccCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CC----CCCccHHHH
Confidence 45578999999999999988765 2346677899999999999999998653210000 00 000000111
Q ss_pred HHHHHhhcccccc---cCCCchHHH---HHH-----hCCCeEEEEEeCCCCh--hHHHHHhcccCCCCCCcEEEEEe-CC
Q 037291 222 EMLSTILSEKLEV---AGANIPHFT---KER-----VWRMKVLIVLDDVNEV--GQLEGLIGELDQFGPGSRIVVTT-RD 287 (349)
Q Consensus 222 ~ll~~~~~~~~~~---~~~~~~~~~---~~~-----l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTt-R~ 287 (349)
.+........... .+..+ +.+ .+. ..++.-++|+|+++.. ..++.|+..+........+|++| ..
T Consensus 81 ~i~~g~~~dv~eidaas~~~v-d~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~ 159 (559)
T PRK05563 81 AITNGSLMDVIEIDAASNNGV-DEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEP 159 (559)
T ss_pred HHhcCCCCCeEEeeccccCCH-HHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCCh
Confidence 1111000000000 00111 111 111 2345678899999754 45677777666544455555555 33
Q ss_pred hhHHHhcCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCcc
Q 037291 288 KGVLEKFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNPL 346 (349)
Q Consensus 288 ~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL 346 (349)
..+...+.. ....+++.+++.++..+.+...+-..+-..+ .+.+..|++.++|.+.
T Consensus 160 ~ki~~tI~S-Rc~~~~f~~~~~~ei~~~L~~i~~~egi~i~--~~al~~ia~~s~G~~R 215 (559)
T PRK05563 160 HKIPATILS-RCQRFDFKRISVEDIVERLKYILDKEGIEYE--DEALRLIARAAEGGMR 215 (559)
T ss_pred hhCcHHHHh-HheEEecCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHH
Confidence 333322210 3467899999999998888876643332111 2446677788887653
No 92
>PRK06620 hypothetical protein; Validated
Probab=98.45 E-value=1.8e-06 Score=74.39 Aligned_cols=128 Identities=10% Similarity=0.011 Sum_probs=75.0
Q ss_pred eEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHHHhCC
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERVWR 249 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~ 249 (349)
+.+.|||++|+|||+|++.+++.... .++. .. .. . . . .. .
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-----~~~~----~~--~~-~----~-------------------~----~~-~ 84 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-----YIIK----DI--FF-N----E-------------------E----IL-E 84 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-----EEcc----hh--hh-c----h-------------------h----HH-h
Confidence 56889999999999999988775421 2221 00 00 0 0 0 01 1
Q ss_pred CeEEEEEeCCCChhH--HHHHhcccCCCCCCcEEEEEeCChh-------HHHhcCCCCCcEEEcCCCCHHHHHHHHHhhh
Q 037291 250 MKVLIVLDDVNEVGQ--LEGLIGELDQFGPGSRIVVTTRDKG-------VLEKFRGEEKKIHRVNGLEFEEAFEHFCNFA 320 (349)
Q Consensus 250 k~~LlVlDdv~~~~~--~~~l~~~~~~~~~gs~IIiTtR~~~-------~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 320 (349)
..-+|++||++...+ +-.+...+. ..|..+|+|++... +...+. ...++++++++.++..+++.+.+
T Consensus 85 ~~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~--~gl~~~l~~pd~~~~~~~l~k~~ 160 (214)
T PRK06620 85 KYNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIK--SVLSILLNSPDDELIKILIFKHF 160 (214)
T ss_pred cCCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHh--CCceEeeCCCCHHHHHHHHHHHH
Confidence 224788999975432 222222222 34668899887432 222233 45689999999999888887776
Q ss_pred cCCC-CCCchHHHHHHHHHHHhcCC
Q 037291 321 FKEN-HCPTNLNWHSRRVVEYAKGN 344 (349)
Q Consensus 321 ~~~~-~~~~~~~~~~~~i~~~~~G~ 344 (349)
-..+ ..+ +++.+-|++.+.|.
T Consensus 161 ~~~~l~l~---~ev~~~L~~~~~~d 182 (214)
T PRK06620 161 SISSVTIS---RQIIDFLLVNLPRE 182 (214)
T ss_pred HHcCCCCC---HHHHHHHHHHccCC
Confidence 4222 222 34556666666553
No 93
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.44 E-value=3.4e-06 Score=82.31 Aligned_cols=132 Identities=19% Similarity=0.255 Sum_probs=79.0
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhhcCCc--ceEEEEeccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHHH
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFTGEFD--GSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKER 246 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~ 246 (349)
...+.|+|..|+|||.|+..+++.....+. .+.|+. ...+...+...+... ....+++.
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit-----------aeef~~el~~al~~~--------~~~~f~~~ 374 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS-----------SEEFTNEFINSIRDG--------KGDSFRRR 374 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee-----------HHHHHHHHHHHHHhc--------cHHHHHHH
Confidence 345889999999999999999998765432 234443 223333443333221 11233343
Q ss_pred hCCCeEEEEEeCCCCh---hHH-HHHhcccCCC-CCCcEEEEEeCCh---------hHHHhcCCCCCcEEEcCCCCHHHH
Q 037291 247 VWRMKVLIVLDDVNEV---GQL-EGLIGELDQF-GPGSRIVVTTRDK---------GVLEKFRGEEKKIHRVNGLEFEEA 312 (349)
Q Consensus 247 l~~k~~LlVlDdv~~~---~~~-~~l~~~~~~~-~~gs~IIiTtR~~---------~~~~~~~~~~~~~~~l~~L~~~ea 312 (349)
+.. .=+|||||++.. ..+ +.++..++.. ..+..|||||+.. .+...+. ...++++.+.+.+.-
T Consensus 375 y~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~--~GLvv~I~~PD~EtR 451 (617)
T PRK14086 375 YRE-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFE--WGLITDVQPPELETR 451 (617)
T ss_pred hhc-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhh--cCceEEcCCCCHHHH
Confidence 333 357889999533 111 2333333221 3356688888753 1222333 567899999999999
Q ss_pred HHHHHhhhcC
Q 037291 313 FEHFCNFAFK 322 (349)
Q Consensus 313 ~~Lf~~~a~~ 322 (349)
.+++.+++-.
T Consensus 452 ~aIL~kka~~ 461 (617)
T PRK14086 452 IAILRKKAVQ 461 (617)
T ss_pred HHHHHHHHHh
Confidence 9999888743
No 94
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.44 E-value=4.8e-06 Score=86.05 Aligned_cols=156 Identities=11% Similarity=0.102 Sum_probs=85.9
Q ss_pred CCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCC------cceEEEEeccccccCCCChH
Q 037291 144 SNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEF------DGSCFMSDVRRNSETGGGLE 217 (349)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~ 217 (349)
.+.++||+.+++++...|... ....+.++|++|+|||+||+.+++++...+ ...+|..+....
T Consensus 172 ~~~~igr~~ei~~~~~~l~r~---~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l-------- 240 (852)
T TIGR03346 172 LDPVIGRDEEIRRTIQVLSRR---TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGAL-------- 240 (852)
T ss_pred CCcCCCcHHHHHHHHHHHhcC---CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHH--------
Confidence 356999999999999999765 334556899999999999999999875432 223333222111
Q ss_pred HHHHHHHHHhhcccccccCCCchHHHHHHh-CCCeEEEEEeCCCChh---------HHHHHhcccCCCCCC-cEEEEEeC
Q 037291 218 HLQKEMLSTILSEKLEVAGANIPHFTKERV-WRMKVLIVLDDVNEVG---------QLEGLIGELDQFGPG-SRIVVTTR 286 (349)
Q Consensus 218 ~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l-~~k~~LlVlDdv~~~~---------~~~~l~~~~~~~~~g-s~IIiTtR 286 (349)
.... ...+ .-...+...+.+.. .+++.+|++|+++... +...++.... ..| -++|.+|.
T Consensus 241 --~a~~--~~~g----~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l--~~g~i~~IgaTt 310 (852)
T TIGR03346 241 --IAGA--KYRG----EFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL--ARGELHCIGATT 310 (852)
T ss_pred --hhcc--hhhh----hHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh--hcCceEEEEeCc
Confidence 0000 0000 00011112222221 2468999999996332 1222222221 223 35555554
Q ss_pred ChhHHHhc--C---CCCCcEEEcCCCCHHHHHHHHHhhh
Q 037291 287 DKGVLEKF--R---GEEKKIHRVNGLEFEEAFEHFCNFA 320 (349)
Q Consensus 287 ~~~~~~~~--~---~~~~~~~~l~~L~~~ea~~Lf~~~a 320 (349)
....-... + ......+.++..+.++..+++....
T Consensus 311 ~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 311 LDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 33321100 0 0133568899999999999887553
No 95
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=3.9e-06 Score=82.78 Aligned_cols=180 Identities=13% Similarity=0.188 Sum_probs=102.0
Q ss_pred CCCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcC-C-c----ceE-------------E
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGE-F-D----GSC-------------F 202 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~-f-~----~~~-------------~ 202 (349)
....+++|.+.-++.|...+... .-...+.++|+.|+||||+|+.+++.+-.. . . ..| |
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~~--~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~ 90 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDTG--RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDV 90 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCe
Confidence 44568999998888888888654 224566899999999999999999875321 1 0 000 1
Q ss_pred EEeccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCCh--hHHHHHhcccCCCCCCcE
Q 037291 203 MSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEV--GQLEGLIGELDQFGPGSR 280 (349)
Q Consensus 203 ~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ 280 (349)
+. +...+ ..+..+ .+++...+.. .-..+++-++|+|+++.. ...+.|+..+....+.+.
T Consensus 91 ~e-id~~s--~~~v~~-ir~l~~~~~~---------------~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~ 151 (576)
T PRK14965 91 FE-IDGAS--NTGVDD-IRELRENVKY---------------LPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVK 151 (576)
T ss_pred ee-eeccC--ccCHHH-HHHHHHHHHh---------------ccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeE
Confidence 10 00000 111111 1111111100 001234557889999754 456777777765555666
Q ss_pred EEEEeCC-hhHHHhcCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCc
Q 037291 281 IVVTTRD-KGVLEKFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNP 345 (349)
Q Consensus 281 IIiTtR~-~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~P 345 (349)
+|++|.+ ..+...+.. ....+++.+++.++....+...+-..+-.. ..+.+..|++.++|..
T Consensus 152 fIl~t~~~~kl~~tI~S-Rc~~~~f~~l~~~~i~~~L~~i~~~egi~i--~~~al~~la~~a~G~l 214 (576)
T PRK14965 152 FIFATTEPHKVPITILS-RCQRFDFRRIPLQKIVDRLRYIADQEGISI--SDAALALVARKGDGSM 214 (576)
T ss_pred EEEEeCChhhhhHHHHH-hhhhhhcCCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHcCCCH
Confidence 6655544 444333211 346789999999998887776553322111 1234556666766643
No 96
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=4.5e-06 Score=82.71 Aligned_cols=192 Identities=18% Similarity=0.152 Sum_probs=106.8
Q ss_pred CCCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHH
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQK 221 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 221 (349)
.....++|.+..++.|..++... .-.+.+.++|+.|+||||+|+.+++.+-....... . .. ..+.-...+
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~~--rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~-~------~~-~Cg~C~~C~ 82 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALISN--RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKP-T------PE-PCGKCELCR 82 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHcC--CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCC-C------CC-CCcccHHHH
Confidence 34467899999999998888765 12356789999999999999999997643210000 0 00 011111111
Q ss_pred HHHHHhhcccccc--cCCCchHHHHHH--------hCCCeEEEEEeCCCCh--hHHHHHhcccCCCCCCcEEEEEeCCh-
Q 037291 222 EMLSTILSEKLEV--AGANIPHFTKER--------VWRMKVLIVLDDVNEV--GQLEGLIGELDQFGPGSRIVVTTRDK- 288 (349)
Q Consensus 222 ~ll~~~~~~~~~~--~~~~~~~~~~~~--------l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTtR~~- 288 (349)
.+........... ......+.+++. ..+++-++|+|+++.. ...+.|+..+......+.+|++|.+.
T Consensus 83 ~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~ 162 (620)
T PRK14948 83 AIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQ 162 (620)
T ss_pred HHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChh
Confidence 1111111000000 000011122211 1244568899999754 45677777766544556566555443
Q ss_pred hHHHhcCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCcc
Q 037291 289 GVLEKFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNPL 346 (349)
Q Consensus 289 ~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL 346 (349)
.++..+.. ....+++.+++.++....+.+.+-..+.... .+.+..|++.++|.+.
T Consensus 163 ~llpTIrS-Rc~~~~f~~l~~~ei~~~L~~ia~kegi~is--~~al~~La~~s~G~lr 217 (620)
T PRK14948 163 RVLPTIIS-RCQRFDFRRIPLEAMVQHLSEIAEKESIEIE--PEALTLVAQRSQGGLR 217 (620)
T ss_pred hhhHHHHh-heeEEEecCCCHHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHcCCCHH
Confidence 33333211 3567889999999988888776643221111 2346778888888764
No 97
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.42 E-value=3.8e-06 Score=86.54 Aligned_cols=49 Identities=20% Similarity=0.302 Sum_probs=41.5
Q ss_pred CCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhc
Q 037291 144 SNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTG 195 (349)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~ 195 (349)
.+.++||+.+++++.+.|... ....+.++|++|+|||+||+.++.++..
T Consensus 177 l~~vigr~~ei~~~i~iL~r~---~~~n~lL~G~pGvGKT~l~~~la~~i~~ 225 (857)
T PRK10865 177 LDPVIGRDEEIRRTIQVLQRR---TKNNPVLIGEPGVGKTAIVEGLAQRIIN 225 (857)
T ss_pred CCcCCCCHHHHHHHHHHHhcC---CcCceEEECCCCCCHHHHHHHHHHHhhc
Confidence 356999999999999999765 3455669999999999999999998744
No 98
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.41 E-value=5.1e-06 Score=82.56 Aligned_cols=49 Identities=22% Similarity=0.308 Sum_probs=39.5
Q ss_pred CCCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhh
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
...+.++|++..++.+.+.+... ....+.|+|++|+||||||+.+++..
T Consensus 151 ~~~~~iiGqs~~~~~l~~~ia~~---~~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 151 RAFSEIVGQERAIKALLAKVASP---FPQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred CcHHhceeCcHHHHHHHHHHhcC---CCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 44467999999999887776433 45678999999999999999998754
No 99
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=7.5e-06 Score=81.15 Aligned_cols=177 Identities=13% Similarity=0.205 Sum_probs=105.0
Q ss_pred CCCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcC-----------------------Cc
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGE-----------------------FD 198 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~-----------------------f~ 198 (349)
...+.++|-+..++.|...+... .-...+.++|+.|+||||+|+.++..+... |+
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~~--~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIATN--KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC--CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 34567999999999898888754 224557899999999999999999865311 11
Q ss_pred ceEEEEeccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCCh--hHHHHHhcccCCCC
Q 037291 199 GSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEV--GQLEGLIGELDQFG 276 (349)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~ 276 (349)
.. .+. ... ..+... .+.++.++... -+.+++-++|+|+++.. ...+.|...+....
T Consensus 92 ~~-~ld----~~~-~~~vd~-Ir~li~~~~~~---------------P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp 149 (614)
T PRK14971 92 IH-ELD----AAS-NNSVDD-IRNLIEQVRIP---------------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPP 149 (614)
T ss_pred eE-Eec----ccc-cCCHHH-HHHHHHHHhhC---------------cccCCcEEEEEECcccCCHHHHHHHHHHHhCCC
Confidence 00 010 000 111111 11111111000 01234558899999754 45677777776655
Q ss_pred CCcEEEEEe-CChhHHHhcCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCc
Q 037291 277 PGSRIVVTT-RDKGVLEKFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNP 345 (349)
Q Consensus 277 ~gs~IIiTt-R~~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~P 345 (349)
..+.+|++| +...+...+.. ...++++.+++.++....+.+.+-..+-..+ .+.+..|++.++|..
T Consensus 150 ~~tifIL~tt~~~kIl~tI~S-Rc~iv~f~~ls~~ei~~~L~~ia~~egi~i~--~~al~~La~~s~gdl 216 (614)
T PRK14971 150 SYAIFILATTEKHKILPTILS-RCQIFDFNRIQVADIVNHLQYVASKEGITAE--PEALNVIAQKADGGM 216 (614)
T ss_pred CCeEEEEEeCCchhchHHHHh-hhheeecCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCH
Confidence 666666555 44444433211 4578999999999999888876643332111 234567777777753
No 100
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.40 E-value=5.4e-06 Score=77.91 Aligned_cols=155 Identities=19% Similarity=0.266 Sum_probs=89.0
Q ss_pred CCCcccccchhhhHHHhhhhc----------CCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCC
Q 037291 144 SNGLVGLNSRIEQIKPFLCMD----------LSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETG 213 (349)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~----------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 213 (349)
-..+.|.+...+++.+.+... .-...+-+.|+|++|+|||+||+.+++.....|- .+. .
T Consensus 144 ~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi---~i~--------~ 212 (398)
T PTZ00454 144 YSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFI---RVV--------G 212 (398)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEE---EEe--------h
Confidence 456789888888887765421 0124577889999999999999999987643321 111 0
Q ss_pred CChHHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCChh----------------HHHHHhcccCCC--
Q 037291 214 GGLEHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEVG----------------QLEGLIGELDQF-- 275 (349)
Q Consensus 214 ~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~~----------------~~~~l~~~~~~~-- 275 (349)
..+ .....+.. ...+...+.......+.+|+||+++... .+..++..+..+
T Consensus 213 ---s~l----~~k~~ge~----~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~ 281 (398)
T PTZ00454 213 ---SEF----VQKYLGEG----PRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQ 281 (398)
T ss_pred ---HHH----HHHhcchh----HHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCC
Confidence 011 11111100 0011122222334568999999986320 122333333322
Q ss_pred CCCcEEEEEeCChhHHHh--cC-CCCCcEEEcCCCCHHHHHHHHHhhh
Q 037291 276 GPGSRIVVTTRDKGVLEK--FR-GEEKKIHRVNGLEFEEAFEHFCNFA 320 (349)
Q Consensus 276 ~~gs~IIiTtR~~~~~~~--~~-~~~~~~~~l~~L~~~ea~~Lf~~~a 320 (349)
..+..||+||.....+.. +. ...+..++++..+.++..++|..+.
T Consensus 282 ~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~ 329 (398)
T PTZ00454 282 TTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTIT 329 (398)
T ss_pred CCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHH
Confidence 235578888876554322 11 1245778999999999888887665
No 101
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.39 E-value=1.1e-05 Score=71.79 Aligned_cols=183 Identities=13% Similarity=0.144 Sum_probs=107.6
Q ss_pred chhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCc------ceEEEEeccccccCCCChHHHHHHHHH
Q 037291 152 SRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFD------GSCFMSDVRRNSETGGGLEHLQKEMLS 225 (349)
Q Consensus 152 ~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~------~~~~~~~~~~~~~~~~~~~~l~~~ll~ 225 (349)
.-++.|.++|........+-+.|+|.+|+|||++++.+.......++ .++.+. ... ..+...+...|+.
T Consensus 44 ~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq----~P~-~p~~~~~Y~~IL~ 118 (302)
T PF05621_consen 44 EALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQ----MPP-EPDERRFYSAILE 118 (302)
T ss_pred HHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEe----cCC-CCChHHHHHHHHH
Confidence 34666777787765666788999999999999999999986543332 233443 443 7788999999999
Q ss_pred HhhcccccccC-CCchHHHHHHhCC-CeEEEEEeCCCCh-----hHHHHHhcccCCCC---CCcEEEEEeCC--------
Q 037291 226 TILSEKLEVAG-ANIPHFTKERVWR-MKVLIVLDDVNEV-----GQLEGLIGELDQFG---PGSRIVVTTRD-------- 287 (349)
Q Consensus 226 ~~~~~~~~~~~-~~~~~~~~~~l~~-k~~LlVlDdv~~~-----~~~~~l~~~~~~~~---~gs~IIiTtR~-------- 287 (349)
+++........ ..+.......++. +.=+||+|++.+. .+-..++..+...+ .=+-|.+-|++
T Consensus 119 ~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D 198 (302)
T PF05621_consen 119 ALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTD 198 (302)
T ss_pred HhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccC
Confidence 99876544332 3332333344433 4558999999654 12222222222222 23344454443
Q ss_pred hhHHHhcCCCCCcEEEcCCCCHH-HHHHHHHhhh--cC--CCCCCchHHHHHHHHHHHhcCCc
Q 037291 288 KGVLEKFRGEEKKIHRVNGLEFE-EAFEHFCNFA--FK--ENHCPTNLNWHSRRVVEYAKGNP 345 (349)
Q Consensus 288 ~~~~~~~~~~~~~~~~l~~L~~~-ea~~Lf~~~a--~~--~~~~~~~~~~~~~~i~~~~~G~P 345 (349)
.+++.. ...+.++....+ +...|+.... ++ ..+. -...++++.|...++|+.
T Consensus 199 ~QLa~R-----F~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~-l~~~~la~~i~~~s~G~i 255 (302)
T PF05621_consen 199 PQLASR-----FEPFELPRWELDEEFRRLLASFERALPLRKPSN-LASPELARRIHERSEGLI 255 (302)
T ss_pred HHHHhc-----cCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHHHHcCCch
Confidence 233332 235556655543 4455554322 12 2222 234578899999999974
No 102
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.39 E-value=1.1e-05 Score=79.00 Aligned_cols=183 Identities=13% Similarity=0.166 Sum_probs=106.5
Q ss_pred CCCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcC-----Ccc-eEEEE---------ec
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGE-----FDG-SCFMS---------DV 206 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~-----f~~-~~~~~---------~~ 206 (349)
.....++|-+.-++.|...+... .-.+.+.++|+.|+||||+|+.+++.+-.. ..+ .|..+ ++
T Consensus 13 ~~f~diiGqe~iv~~L~~~i~~~--~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv 90 (563)
T PRK06647 13 RDFNSLEGQDFVVETLKHSIESN--KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDV 90 (563)
T ss_pred CCHHHccCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCe
Confidence 44568999999999999888754 234567899999999999999999875321 010 00000 00
Q ss_pred cccccC-CCChHHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCCh--hHHHHHhcccCCCCCCcEEEE
Q 037291 207 RRNSET-GGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEV--GQLEGLIGELDQFGPGSRIVV 283 (349)
Q Consensus 207 ~~~~~~-~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIi 283 (349)
...... ..+...+ +++...+ ...-..+++-++|+|+++.. ..++.|+..+....+.+.+|+
T Consensus 91 ~~idgas~~~vddI-r~l~e~~---------------~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~ 154 (563)
T PRK06647 91 IEIDGASNTSVQDV-RQIKEEI---------------MFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIF 154 (563)
T ss_pred EEecCcccCCHHHH-HHHHHHH---------------HhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEE
Confidence 000000 0111111 0111000 00012345668999999754 456777777776556667766
Q ss_pred EeCC-hhHHHhcCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCc
Q 037291 284 TTRD-KGVLEKFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNP 345 (349)
Q Consensus 284 TtR~-~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~P 345 (349)
+|.+ ..+...+.. ....+++.+++.++..+.+...+...+-.. ..+.+..|++.++|.+
T Consensus 155 ~tte~~kL~~tI~S-Rc~~~~f~~l~~~el~~~L~~i~~~egi~i--d~eAl~lLa~~s~Gdl 214 (563)
T PRK06647 155 ATTEVHKLPATIKS-RCQHFNFRLLSLEKIYNMLKKVCLEDQIKY--EDEALKWIAYKSTGSV 214 (563)
T ss_pred ecCChHHhHHHHHH-hceEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCH
Confidence 6644 333332211 345789999999999888887764433221 1245667778888765
No 103
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.38 E-value=3.7e-06 Score=79.67 Aligned_cols=155 Identities=18% Similarity=0.240 Sum_probs=90.2
Q ss_pred CCcccccchhhhHHHhhhhc----------CCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCC
Q 037291 145 NGLVGLNSRIEQIKPFLCMD----------LSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGG 214 (349)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~----------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 214 (349)
..+.|.+..++++.+.+... .-.....+.|+|++|+|||+||+.+++.....|- .+. .+
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi---~V~----~s---- 251 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFL---RVV----GS---- 251 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEE---EEe----cc----
Confidence 45788999999888876421 0123456889999999999999999998754431 111 00
Q ss_pred ChHHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCChh----------------HHHHHhcccCCC--C
Q 037291 215 GLEHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEVG----------------QLEGLIGELDQF--G 276 (349)
Q Consensus 215 ~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~~----------------~~~~l~~~~~~~--~ 276 (349)
. +.. ...+... ..+...+.......+.+|+||+++... .+..++..+..+ .
T Consensus 252 e---L~~----k~~Ge~~----~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~ 320 (438)
T PTZ00361 252 E---LIQ----KYLGDGP----KLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSR 320 (438)
T ss_pred h---hhh----hhcchHH----HHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhccc
Confidence 0 110 0100000 001122222234567899999975221 122233222222 2
Q ss_pred CCcEEEEEeCChhHHHhcC---CCCCcEEEcCCCCHHHHHHHHHhhhc
Q 037291 277 PGSRIVVTTRDKGVLEKFR---GEEKKIHRVNGLEFEEAFEHFCNFAF 321 (349)
Q Consensus 277 ~gs~IIiTtR~~~~~~~~~---~~~~~~~~l~~L~~~ea~~Lf~~~a~ 321 (349)
.+..||+||.....+...- ......++++..+.++..++|..+..
T Consensus 321 ~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 321 GDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS 368 (438)
T ss_pred CCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHh
Confidence 3567888887665444321 12357889999999999999987763
No 104
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.36 E-value=3.3e-06 Score=74.33 Aligned_cols=182 Identities=15% Similarity=0.192 Sum_probs=109.9
Q ss_pred CCCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhc--CCcceEEEEeccccccCCCChHHH
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTG--EFDGSCFMSDVRRNSETGGGLEHL 219 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~--~f~~~~~~~~~~~~~~~~~~~~~l 219 (349)
...+.++|-+..+..|...+... ..+....+|++|.|||+-|+.++..+-. -|...+.-.+. +. ..+.. +
T Consensus 33 kt~de~~gQe~vV~~L~~a~~~~---~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lna---Sd-erGis-v 104 (346)
T KOG0989|consen 33 KTFDELAGQEHVVQVLKNALLRR---ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNA---SD-ERGIS-V 104 (346)
T ss_pred CcHHhhcchHHHHHHHHHHHhhc---CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcc---cc-ccccc-c
Confidence 55678899998888888777653 5788899999999999999999987532 24433322111 11 11111 0
Q ss_pred HHH---HHHHhhcccccccCCCchHHHHHHhCCCe-EEEEEeCCCCh--hHHHHHhcccCCCCCCcEEEEEeCChh-HHH
Q 037291 220 QKE---MLSTILSEKLEVAGANIPHFTKERVWRMK-VLIVLDDVNEV--GQLEGLIGELDQFGPGSRIVVTTRDKG-VLE 292 (349)
Q Consensus 220 ~~~---ll~~~~~~~~~~~~~~~~~~~~~~l~~k~-~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTtR~~~-~~~ 292 (349)
.+. -++++........ .. ...+ -++|||+++.+ +.|..+...+..+...++.|+.+..-. +..
T Consensus 105 vr~Kik~fakl~~~~~~~~---------~~-~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~ 174 (346)
T KOG0989|consen 105 VREKIKNFAKLTVLLKRSD---------GY-PCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIR 174 (346)
T ss_pred hhhhhcCHHHHhhcccccc---------CC-CCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCCh
Confidence 000 0011100000000 00 0112 47899999866 568888888888777777766554332 211
Q ss_pred hcCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCC
Q 037291 293 KFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGN 344 (349)
Q Consensus 293 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~ 344 (349)
.+. .....|..++|..++..+-+...+-.++-+.+ .+..+.|++.++|-
T Consensus 175 pi~-SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d--~~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 175 PLV-SRCQKFRFKKLKDEDIVDRLEKIASKEGVDID--DDALKLIAKISDGD 223 (346)
T ss_pred HHH-hhHHHhcCCCcchHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHcCCc
Confidence 111 03457899999999999988888855543322 35578888888873
No 105
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.35 E-value=1.1e-06 Score=77.24 Aligned_cols=90 Identities=17% Similarity=0.141 Sum_probs=58.9
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhc-CCcceEEEEeccccccCCCChHHHHHHHHHHhhcccccccC-------CCc
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTG-EFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAG-------ANI 239 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~-------~~~ 239 (349)
....++|.|++|+|||||++.+++.+.. +|+..+|+..+.+- ..+..++++.+...+.......+. ...
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er---~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~ 91 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDER---PEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMV 91 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCC---CccHHHHHHHhccEEEEecCCCCHHHHHHHHHHH
Confidence 4577889999999999999999997654 68888898754432 357888888873333222211111 011
Q ss_pred hHHHHH-HhCCCeEEEEEeCCC
Q 037291 240 PHFTKE-RVWRMKVLIVLDDVN 260 (349)
Q Consensus 240 ~~~~~~-~l~~k~~LlVlDdv~ 260 (349)
....+. +-.+++++|++|++.
T Consensus 92 ~~~a~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 92 LEKAKRLVEHGKDVVILLDSIT 113 (249)
T ss_pred HHHHHHHHHCCCCEEEEEECHH
Confidence 112222 135789999999995
No 106
>CHL00181 cbbX CbbX; Provisional
Probab=98.34 E-value=2.9e-05 Score=69.94 Aligned_cols=134 Identities=11% Similarity=0.107 Sum_probs=73.7
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhhcC-C-cceEEEEeccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHHH
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFTGE-F-DGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKER 246 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~-f-~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~ 246 (349)
...+.++|++|+||||+|+.+++..... + ...-|+. ++ ... +.....+... ......+.+.
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~----v~-----~~~----l~~~~~g~~~----~~~~~~l~~a 121 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLT----VT-----RDD----LVGQYIGHTA----PKTKEVLKKA 121 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEE----ec-----HHH----HHHHHhccch----HHHHHHHHHc
Confidence 3457899999999999999998865321 1 1111332 11 111 2222211110 0011122221
Q ss_pred hCCCeEEEEEeCCCCh-----------hHHHHHhcccCCCCCCcEEEEEeCChhHHH------hcCCCCCcEEEcCCCCH
Q 037291 247 VWRMKVLIVLDDVNEV-----------GQLEGLIGELDQFGPGSRIVVTTRDKGVLE------KFRGEEKKIHRVNGLEF 309 (349)
Q Consensus 247 l~~k~~LlVlDdv~~~-----------~~~~~l~~~~~~~~~gs~IIiTtR~~~~~~------~~~~~~~~~~~l~~L~~ 309 (349)
..-+|+||+++.. +....+...+.......+||+++....+.. .+.......+++++++.
T Consensus 122 ---~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~ 198 (287)
T CHL00181 122 ---MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTP 198 (287)
T ss_pred ---cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCH
Confidence 2348999999642 234455555544445567777775433211 11111346899999999
Q ss_pred HHHHHHHHhhhcC
Q 037291 310 EEAFEHFCNFAFK 322 (349)
Q Consensus 310 ~ea~~Lf~~~a~~ 322 (349)
+|..+++...+-.
T Consensus 199 ~el~~I~~~~l~~ 211 (287)
T CHL00181 199 EELLQIAKIMLEE 211 (287)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999877643
No 107
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.34 E-value=5.6e-06 Score=65.29 Aligned_cols=23 Identities=39% Similarity=0.492 Sum_probs=21.1
Q ss_pred EEEeccCccchHHHHHHHHHhhh
Q 037291 172 VGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 172 i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
|.|+|++|+|||++|+.+++.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57999999999999999999874
No 108
>CHL00176 ftsH cell division protein; Validated
Probab=98.33 E-value=1.1e-05 Score=80.02 Aligned_cols=156 Identities=21% Similarity=0.286 Sum_probs=88.6
Q ss_pred CCCcccccchhhhHHHhhhh---cC------CCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCC
Q 037291 144 SNGLVGLNSRIEQIKPFLCM---DL------SDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGG 214 (349)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~---~~------~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 214 (349)
...+.|.+...+++.+++.. .. ....+-+.|+|++|+|||+||+.++...... |+. .+
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p-----~i~----is---- 248 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVP-----FFS----IS---- 248 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----eee----cc----
Confidence 35678887776666555422 10 1124568899999999999999999865322 221 11
Q ss_pred ChHHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCChh----------------HHHHHhcccCCC--C
Q 037291 215 GLEHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEVG----------------QLEGLIGELDQF--G 276 (349)
Q Consensus 215 ~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~~----------------~~~~l~~~~~~~--~ 276 (349)
...+.... .+. ....+...+.......+.+|+|||++... .+..++..+..+ .
T Consensus 249 -~s~f~~~~----~g~----~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~ 319 (638)
T CHL00176 249 -GSEFVEMF----VGV----GAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN 319 (638)
T ss_pred -HHHHHHHh----hhh----hHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC
Confidence 01111100 000 00112233444455678999999996331 134444333322 2
Q ss_pred CCcEEEEEeCChhHHHh-c-C-CCCCcEEEcCCCCHHHHHHHHHhhhc
Q 037291 277 PGSRIVVTTRDKGVLEK-F-R-GEEKKIHRVNGLEFEEAFEHFCNFAF 321 (349)
Q Consensus 277 ~gs~IIiTtR~~~~~~~-~-~-~~~~~~~~l~~L~~~ea~~Lf~~~a~ 321 (349)
.+..||.||.....+.. + . ..-+..+.++..+.++-.++++.++-
T Consensus 320 ~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~ 367 (638)
T CHL00176 320 KGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHAR 367 (638)
T ss_pred CCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHh
Confidence 34567777766544332 1 1 11346789999999999999988763
No 109
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.32 E-value=4.6e-06 Score=72.68 Aligned_cols=173 Identities=20% Similarity=0.230 Sum_probs=102.7
Q ss_pred CCCCCcccccchhhhHHHhhhhc--CCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHH
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMD--LSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHL 219 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~--~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 219 (349)
....+|||-+.-.++|.-++... +....-.+.++|++|.||||||.-+++.+..++.. .+. ..+. =
T Consensus 23 ~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~---------tsG--p~le-K 90 (332)
T COG2255 23 KTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKI---------TSG--PALE-K 90 (332)
T ss_pred ccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEe---------ccc--cccc-C
Confidence 44578999999888887777643 34557889999999999999999999987654331 111 0000 0
Q ss_pred HHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCChh-HH-HHHhcccCC--------CCC-----------C
Q 037291 220 QKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEVG-QL-EGLIGELDQ--------FGP-----------G 278 (349)
Q Consensus 220 ~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~~-~~-~~l~~~~~~--------~~~-----------g 278 (349)
..+++.-+ ..|.. .=+|++|.++... .. +-+-+.+.+ .++ .
T Consensus 91 ~gDlaaiL-----------------t~Le~-~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppF 152 (332)
T COG2255 91 PGDLAAIL-----------------TNLEE-GDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPF 152 (332)
T ss_pred hhhHHHHH-----------------hcCCc-CCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCe
Confidence 11111111 11111 2356678775332 11 111122211 123 3
Q ss_pred cEEEEEeCChhHHHhcCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCcc
Q 037291 279 SRIVVTTRDKGVLEKFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNPL 346 (349)
Q Consensus 279 s~IIiTtR~~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL 346 (349)
+-|=.|||...+.+.+...-.-+.+++-.+.+|-.++..+.+..-+ .+-.++.+.+|++...|-|-
T Consensus 153 TLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~--i~i~~~~a~eIA~rSRGTPR 218 (332)
T COG2255 153 TLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILG--IEIDEEAALEIARRSRGTPR 218 (332)
T ss_pred eEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhC--CCCChHHHHHHHHhccCCcH
Confidence 4445799977665544322346778899999999999988773211 11123457889999999883
No 110
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.31 E-value=2e-05 Score=72.32 Aligned_cols=89 Identities=11% Similarity=0.222 Sum_probs=59.5
Q ss_pred eEEEEEeCCCCh--hHHHHHhcccCCCCCCcEEEEEeCChh-HHHhcCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCC
Q 037291 251 KVLIVLDDVNEV--GQLEGLIGELDQFGPGSRIVVTTRDKG-VLEKFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCP 327 (349)
Q Consensus 251 ~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTtR~~~-~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 327 (349)
+-++|+|+++.. ...+.++..+.-...++.+|+||.+.. ++..... ....+.+.+++.+++.+.+.... +. ..
T Consensus 107 ~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~S-Rc~~~~~~~~~~~~~~~~L~~~~-~~-~~- 182 (328)
T PRK05707 107 RKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKS-RCQQQACPLPSNEESLQWLQQAL-PE-SD- 182 (328)
T ss_pred CeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHh-hceeeeCCCcCHHHHHHHHHHhc-cc-CC-
Confidence 445567999744 566777777765556778888887654 3333211 45689999999999999887653 11 11
Q ss_pred chHHHHHHHHHHHhcCCcc
Q 037291 328 TNLNWHSRRVVEYAKGNPL 346 (349)
Q Consensus 328 ~~~~~~~~~i~~~~~G~PL 346 (349)
.+.+..++..++|.|+
T Consensus 183 ---~~~~~~~l~la~Gsp~ 198 (328)
T PRK05707 183 ---ERERIELLTLAGGSPL 198 (328)
T ss_pred ---hHHHHHHHHHcCCCHH
Confidence 1235567888999886
No 111
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.31 E-value=1.2e-05 Score=72.44 Aligned_cols=131 Identities=11% Similarity=0.099 Sum_probs=71.8
Q ss_pred EEEEeccCccchHHHHHHHHHhhhcC--CcceEEEEeccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHHHhC
Q 037291 171 IVGIWGMGGIGKTTLAEAIFDQFTGE--FDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERVW 248 (349)
Q Consensus 171 ~i~I~G~~GiGKTtLa~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~ 248 (349)
.+.|+|++|+|||++|+.+++.+... .....|+. .+. .. ++..+.+... ..+...+.+.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~----v~~-----~~----l~~~~~g~~~----~~~~~~~~~a-- 120 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVS----VTR-----DD----LVGQYIGHTA----PKTKEILKRA-- 120 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEE----ecH-----HH----HhHhhcccch----HHHHHHHHHc--
Confidence 57799999999999999888765432 11122332 110 11 2222211110 0111222221
Q ss_pred CCeEEEEEeCCCCh-----------hHHHHHhcccCCCCCCcEEEEEeCChhHHHhc--C----CCCCcEEEcCCCCHHH
Q 037291 249 RMKVLIVLDDVNEV-----------GQLEGLIGELDQFGPGSRIVVTTRDKGVLEKF--R----GEEKKIHRVNGLEFEE 311 (349)
Q Consensus 249 ~k~~LlVlDdv~~~-----------~~~~~l~~~~~~~~~gs~IIiTtR~~~~~~~~--~----~~~~~~~~l~~L~~~e 311 (349)
..-+|+||+++.. +..+.+...+.....+.+||+++.....-..+ + ......+++++++.+|
T Consensus 121 -~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~ed 199 (284)
T TIGR02880 121 -MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAE 199 (284)
T ss_pred -cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHH
Confidence 2358899999632 22345555555444556777776543221111 1 0124679999999999
Q ss_pred HHHHHHhhhc
Q 037291 312 AFEHFCNFAF 321 (349)
Q Consensus 312 a~~Lf~~~a~ 321 (349)
..+++...+-
T Consensus 200 l~~I~~~~l~ 209 (284)
T TIGR02880 200 LLVIAGLMLK 209 (284)
T ss_pred HHHHHHHHHH
Confidence 9999887763
No 112
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.31 E-value=4.8e-06 Score=84.15 Aligned_cols=47 Identities=26% Similarity=0.403 Sum_probs=39.4
Q ss_pred CCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhh
Q 037291 145 NGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
+.++||+.+++++.+.|... ....+.|+|++|+|||+||+.+++++.
T Consensus 186 ~~liGR~~ei~~~i~iL~r~---~~~n~LLvGppGvGKT~lae~la~~i~ 232 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRR---RKNNPLLVGESGVGKTAIAEGLAWRIV 232 (758)
T ss_pred CcCcCCCHHHHHHHHHHhcc---CCCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 46999999999999999875 234446899999999999999998753
No 113
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.30 E-value=1.8e-05 Score=71.72 Aligned_cols=168 Identities=17% Similarity=0.178 Sum_probs=103.2
Q ss_pred CCCCcccccchhhhHHHhhhhcCCCC-eeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHH
Q 037291 143 SSNGLVGLNSRIEQIKPFLCMDLSDT-VQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQK 221 (349)
Q Consensus 143 ~~~~~vGr~~~~~~l~~~L~~~~~~~-~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 221 (349)
..+++.+|+.+++.+..++... +.. +..|.|+|.+|.|||.+.+++.+.... ..+|+. .-. .+....+..
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~-~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~---~~vw~n----~~e-cft~~~lle 74 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNN-SCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL---ENVWLN----CVE-CFTYAILLE 74 (438)
T ss_pred cccCccchHHHHHHHHHHhCCC-CcccceeEEEeccCCCchhHHHHHHHhhcCC---cceeee----hHH-hccHHHHHH
Confidence 3467899999999999999877 443 455699999999999999999987632 356776 222 667788888
Q ss_pred HHHHHhh-cccccccCCC-------chHHHHH--Hh--CCCeEEEEEeCCCChhHH-----HHHhcccCCCCCCcEEEEE
Q 037291 222 EMLSTIL-SEKLEVAGAN-------IPHFTKE--RV--WRMKVLIVLDDVNEVGQL-----EGLIGELDQFGPGSRIVVT 284 (349)
Q Consensus 222 ~ll~~~~-~~~~~~~~~~-------~~~~~~~--~l--~~k~~LlVlDdv~~~~~~-----~~l~~~~~~~~~gs~IIiT 284 (349)
.++.+.. ....+..-+. ....+.+ .. .++.++|||||++...+. ..++....-.......|++
T Consensus 75 ~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iil 154 (438)
T KOG2543|consen 75 KILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIIL 154 (438)
T ss_pred HHHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEE
Confidence 8888875 2222211111 1122222 11 246899999999755432 2222211111112334444
Q ss_pred eCCh---hHHHhcCCCCCcEEEcCCCCHHHHHHHHHhh
Q 037291 285 TRDK---GVLEKFRGEEKKIHRVNGLEFEEAFEHFCNF 319 (349)
Q Consensus 285 tR~~---~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 319 (349)
+-.. .....++.....++..+.-+.+|..+++.+.
T Consensus 155 s~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 155 SAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred eccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 4322 2222234334566788888999999888654
No 114
>PF14516 AAA_35: AAA-like domain
Probab=98.28 E-value=5.1e-05 Score=69.91 Aligned_cols=194 Identities=9% Similarity=0.129 Sum_probs=108.4
Q ss_pred CCCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEecccccc-CCCChHHHH
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSE-TGGGLEHLQ 220 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~-~~~~~~~l~ 220 (349)
.+.+..|.|...-+++.+.|... ...+.|.|+-.+|||+|...+.+.....=..++++. +..... ...+...++
T Consensus 8 ~~~~~Yi~R~~~e~~~~~~i~~~----G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id-~~~~~~~~~~~~~~f~ 82 (331)
T PF14516_consen 8 LDSPFYIERPPAEQECYQEIVQP----GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYID-LQQLGSAIFSDLEQFL 82 (331)
T ss_pred CCCCcccCchHHHHHHHHHHhcC----CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEE-eecCCCcccCCHHHHH
Confidence 45566788886666666666542 378899999999999999999988765422233443 433322 123455555
Q ss_pred HHHHHHhhcc----cc-----c--c-cCCCchHHHHHHh---CCCeEEEEEeCCCChhH----HHHHhcccC-CC-----
Q 037291 221 KEMLSTILSE----KL-----E--V-AGANIPHFTKERV---WRMKVLIVLDDVNEVGQ----LEGLIGELD-QF----- 275 (349)
Q Consensus 221 ~~ll~~~~~~----~~-----~--~-~~~~~~~~~~~~l---~~k~~LlVlDdv~~~~~----~~~l~~~~~-~~----- 275 (349)
+.++..+... .. . . ........+.+.+ .+++++|+||+++..-. ...++..+. |.
T Consensus 83 ~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~ 162 (331)
T PF14516_consen 83 RWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKN 162 (331)
T ss_pred HHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhccc
Confidence 5555444321 10 0 0 1123334444432 26799999999974321 122322221 00
Q ss_pred --CCCcEEEEEeCChh--HHHhcC---CCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCcc
Q 037291 276 --GPGSRIVVTTRDKG--VLEKFR---GEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNPL 346 (349)
Q Consensus 276 --~~gs~IIiTtR~~~--~~~~~~---~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL 346 (349)
....-.++...+.. ...... ......++|++++.+|...|+.++... . . ....++|...+||+|.
T Consensus 163 ~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--~-~---~~~~~~l~~~tgGhP~ 234 (331)
T PF14516_consen 163 NPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE--F-S---QEQLEQLMDWTGGHPY 234 (331)
T ss_pred CcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc--C-C---HHHHHHHHHHHCCCHH
Confidence 01122222222111 111110 013467899999999999999887422 1 1 1228899999999995
No 115
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=3.1e-05 Score=69.76 Aligned_cols=153 Identities=22% Similarity=0.336 Sum_probs=92.7
Q ss_pred CCcccccchhhhHHHhhhhc----------CCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCC
Q 037291 145 NGLVGLNSRIEQIKPFLCMD----------LSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGG 214 (349)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~----------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 214 (349)
..+=|.+..++++.+..... .=+.++-|.+||++|.|||-||++++++.. ..|+..++
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~-----AtFIrvvg------- 218 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTD-----ATFIRVVG------- 218 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccC-----ceEEEecc-------
Confidence 34556788888887765432 113467788999999999999999999864 34554221
Q ss_pred ChHHHHHHHHHHhhcccccccCCCchHHHHHHh-CCCeEEEEEeCCCChh----------------HHHHHhcccCCCCC
Q 037291 215 GLEHLQKEMLSTILSEKLEVAGANIPHFTKERV-WRMKVLIVLDDVNEVG----------------QLEGLIGELDQFGP 277 (349)
Q Consensus 215 ~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l-~~k~~LlVlDdv~~~~----------------~~~~l~~~~~~~~~ 277 (349)
.++.....++.. .+...+.+.. .+.+.+|++|.++... .+-+|+..+..|.+
T Consensus 219 ------SElVqKYiGEGa-----RlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~ 287 (406)
T COG1222 219 ------SELVQKYIGEGA-----RLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP 287 (406)
T ss_pred ------HHHHHHHhccch-----HHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC
Confidence 122222222221 1112222222 3568999999986221 23345555555544
Q ss_pred --CcEEEEEeCChhHHHhc--C-CCCCcEEEcCCCCHHHHHHHHHhhh
Q 037291 278 --GSRIVVTTRDKGVLEKF--R-GEEKKIHRVNGLEFEEAFEHFCNFA 320 (349)
Q Consensus 278 --gs~IIiTtR~~~~~~~~--~-~~~~~~~~l~~L~~~ea~~Lf~~~a 320 (349)
..+||..|.-.+.+... . +.-+..++++.-+.+.-.++|.=|+
T Consensus 288 ~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHt 335 (406)
T COG1222 288 RGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHT 335 (406)
T ss_pred CCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHh
Confidence 45899888766654332 1 2246788998666666677787666
No 116
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.27 E-value=1.6e-06 Score=79.78 Aligned_cols=90 Identities=16% Similarity=0.137 Sum_probs=58.4
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhc-CCcceEEEEeccccccCCCChHHHHHHHHHHhhcccccccC---C----Cc
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTG-EFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAG---A----NI 239 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~---~----~~ 239 (349)
..+..+|+|++|+||||||+.+++.+.. +|+..+|+..+++. .....++++.+...+.......+. - ..
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER---~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ 244 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDER---PEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMV 244 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCc---hhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHH
Confidence 4567789999999999999999997754 69999999866553 235667777776322222111111 0 01
Q ss_pred hHHHHHH-hCCCeEEEEEeCCC
Q 037291 240 PHFTKER-VWRMKVLIVLDDVN 260 (349)
Q Consensus 240 ~~~~~~~-l~~k~~LlVlDdv~ 260 (349)
.+..+.. ..++++||++|++.
T Consensus 245 ie~Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 245 IEKAKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred HHHHHHHHHcCCCEEEEEEChH
Confidence 1111111 36789999999995
No 117
>PRK08116 hypothetical protein; Validated
Probab=98.25 E-value=4.1e-06 Score=74.72 Aligned_cols=102 Identities=24% Similarity=0.287 Sum_probs=57.2
Q ss_pred eEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHHHhCC
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERVWR 249 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~ 249 (349)
..+.|+|.+|+|||.||..+++.+..+...++|+. ...++..+........ .... ..+.+.+.+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~-----------~~~ll~~i~~~~~~~~----~~~~-~~~~~~l~~ 178 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN-----------FPQLLNRIKSTYKSSG----KEDE-NEIIRSLVN 178 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-----------HHHHHHHHHHHHhccc----cccH-HHHHHHhcC
Confidence 45789999999999999999998866544445554 1223333333221110 0111 233344444
Q ss_pred CeEEEEEeCCC--ChhHH--HHHhcccCC-CCCCcEEEEEeCCh
Q 037291 250 MKVLIVLDDVN--EVGQL--EGLIGELDQ-FGPGSRIVVTTRDK 288 (349)
Q Consensus 250 k~~LlVlDdv~--~~~~~--~~l~~~~~~-~~~gs~IIiTtR~~ 288 (349)
-. ||||||+. ....| ..+...+.. ...+..+|+||...
T Consensus 179 ~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 179 AD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred CC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 34 89999993 22222 233333321 23566799998754
No 118
>PRK12377 putative replication protein; Provisional
Probab=98.25 E-value=4.3e-05 Score=67.11 Aligned_cols=36 Identities=22% Similarity=0.196 Sum_probs=29.4
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEE
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMS 204 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 204 (349)
...+.|+|++|+|||+||.++++.+......+.|+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~ 136 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT 136 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 467889999999999999999998876555556665
No 119
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.25 E-value=1.8e-05 Score=77.11 Aligned_cols=176 Identities=20% Similarity=0.259 Sum_probs=91.9
Q ss_pred CCCcccccchhhhHHHhhhh---c------CCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCC
Q 037291 144 SNGLVGLNSRIEQIKPFLCM---D------LSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGG 214 (349)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~---~------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 214 (349)
.+.++|.+...+++.+++.. . .....+-+.++|++|+|||+||+.++......| +. .+
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~-----~~----i~---- 120 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF-----FS----IS---- 120 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCe-----ee----cc----
Confidence 35677877766655554431 1 012245688999999999999999998653221 11 11
Q ss_pred ChHHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCChh----------------HHHHHhcccCCC--C
Q 037291 215 GLEHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEVG----------------QLEGLIGELDQF--G 276 (349)
Q Consensus 215 ~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~~----------------~~~~l~~~~~~~--~ 276 (349)
...+.. ...+. ....+...+.......+.+|+|||++... .+..++..+..+ .
T Consensus 121 -~~~~~~----~~~g~----~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~ 191 (495)
T TIGR01241 121 -GSDFVE----MFVGV----GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN 191 (495)
T ss_pred -HHHHHH----HHhcc----cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC
Confidence 111111 11000 00111123333334567899999995321 123333333322 2
Q ss_pred CCcEEEEEeCChhHHHh-c-C-CCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCC
Q 037291 277 PGSRIVVTTRDKGVLEK-F-R-GEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGN 344 (349)
Q Consensus 277 ~gs~IIiTtR~~~~~~~-~-~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~ 344 (349)
.+..||.||.....+.. + . ..-+..++++..+.++-.++|..+.-....... .....+++.+.|.
T Consensus 192 ~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~---~~l~~la~~t~G~ 259 (495)
T TIGR01241 192 TGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPD---VDLKAVARRTPGF 259 (495)
T ss_pred CCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcc---hhHHHHHHhCCCC
Confidence 24456666765442221 1 1 114578899999999999998877633221111 1133556665553
No 120
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.22 E-value=5.6e-05 Score=68.92 Aligned_cols=188 Identities=12% Similarity=0.143 Sum_probs=105.7
Q ss_pred CCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcC---------------CcceEEEEecccc
Q 037291 145 NGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGE---------------FDGSCFMSDVRRN 209 (349)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~---------------f~~~~~~~~~~~~ 209 (349)
..++|-+...+.+...+..+ .-.+...++|+.|+||+++|..+++.+-.. ++...|+......
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~--rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~ 81 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQN--RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH 81 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhC--CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc
Confidence 45789998888888888765 224788899999999999999999865221 1122333211000
Q ss_pred ccCCCChHHHHHHHHHHhhcccccccC---CCchHHHHHHh-----CCCeEEEEEeCCCCh--hHHHHHhcccCCCCCCc
Q 037291 210 SETGGGLEHLQKEMLSTILSEKLEVAG---ANIPHFTKERV-----WRMKVLIVLDDVNEV--GQLEGLIGELDQFGPGS 279 (349)
Q Consensus 210 ~~~~~~~~~l~~~ll~~~~~~~~~~~~---~~~~~~~~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs 279 (349)
.. . . +-...+............ +.+ ..+.+.+ .+++-++|+|+++.. ...+.++..+.-.. .+
T Consensus 82 ~g-~-~---~~~~~~~~~~~~~~~~~~I~id~i-r~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~ 154 (314)
T PRK07399 82 QG-K-L---ITASEAEEAGLKRKAPPQIRLEQI-REIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NG 154 (314)
T ss_pred cc-c-c---cchhhhhhccccccccccCcHHHH-HHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CC
Confidence 00 0 0 000000000000000000 111 1222222 345678999999754 45666776665544 44
Q ss_pred EEEEEeCC-hhHHHhcCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCccc
Q 037291 280 RIVVTTRD-KGVLEKFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNPLV 347 (349)
Q Consensus 280 ~IIiTtR~-~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLa 347 (349)
.+|++|.+ ..++..... ....+++.+++.++..+.+......... . .....++..++|.|..
T Consensus 155 ~fILi~~~~~~Ll~TI~S-Rcq~i~f~~l~~~~~~~~L~~~~~~~~~--~---~~~~~l~~~a~Gs~~~ 217 (314)
T PRK07399 155 TLILIAPSPESLLPTIVS-RCQIIPFYRLSDEQLEQVLKRLGDEEIL--N---INFPELLALAQGSPGA 217 (314)
T ss_pred eEEEEECChHhCcHHHHh-hceEEecCCCCHHHHHHHHHHhhccccc--h---hHHHHHHHHcCCCHHH
Confidence 55555544 444443321 4679999999999999999876422111 1 1135788899998853
No 121
>PRK08181 transposase; Validated
Probab=98.20 E-value=8.7e-06 Score=72.35 Aligned_cols=35 Identities=26% Similarity=0.133 Sum_probs=27.8
Q ss_pred eEEEEeccCccchHHHHHHHHHhhhcCCcceEEEE
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMS 204 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 204 (349)
..+.|+|++|+|||.||..+++........+.|+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~ 141 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR 141 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee
Confidence 45889999999999999999998765544455554
No 122
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.18 E-value=5.1e-05 Score=71.59 Aligned_cols=119 Identities=24% Similarity=0.249 Sum_probs=77.7
Q ss_pred EEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHHHhCCC
Q 037291 171 IVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERVWRM 250 (349)
Q Consensus 171 ~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k 250 (349)
++.|.|+-++|||||++.+.....+. .+++........ ...+. +.+ ..+.+.-..+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~-~~~l~----d~~----------------~~~~~~~~~~ 94 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLD-RIELL----DLL----------------RAYIELKERE 94 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcc-hhhHH----HHH----------------HHHHHhhccC
Confidence 89999999999999997777765444 455541111111 11111 111 1111111126
Q ss_pred eEEEEEeCCCChhHHHHHhcccCCCCCCcEEEEEeCChhHHH-----hcCCCCCcEEEcCCCCHHHHHHH
Q 037291 251 KVLIVLDDVNEVGQLEGLIGELDQFGPGSRIVVTTRDKGVLE-----KFRGEEKKIHRVNGLEFEEAFEH 315 (349)
Q Consensus 251 ~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IIiTtR~~~~~~-----~~~~~~~~~~~l~~L~~~ea~~L 315 (349)
+.+++||.|.....|...+..+.+.++. +|++|+-+..++. .+.+ ....+++.||+..|-..+
T Consensus 95 ~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~G-R~~~~~l~PlSF~Efl~~ 162 (398)
T COG1373 95 KSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAG-RGKDLELYPLSFREFLKL 162 (398)
T ss_pred CceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCC-CceeEEECCCCHHHHHhh
Confidence 7899999999999998888877766666 8888887765432 2222 468899999999998663
No 123
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.16 E-value=3.7e-05 Score=71.58 Aligned_cols=133 Identities=17% Similarity=0.197 Sum_probs=84.4
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHHHh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERV 247 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l 247 (349)
....+.|||..|.|||.|++++.+......+...++. . ........++..+..... ..+++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y----~-----~se~f~~~~v~a~~~~~~--------~~Fk~~y 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVY----L-----TSEDFTNDFVKALRDNEM--------EKFKEKY 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEe----c-----cHHHHHHHHHHHHHhhhH--------HHHHHhh
Confidence 4788899999999999999999998877766443332 1 123344444444433211 3444444
Q ss_pred CCCeEEEEEeCCCCh----hHHHHHhcccCCC-CCCcEEEEEeCCh---------hHHHhcCCCCCcEEEcCCCCHHHHH
Q 037291 248 WRMKVLIVLDDVNEV----GQLEGLIGELDQF-GPGSRIVVTTRDK---------GVLEKFRGEEKKIHRVNGLEFEEAF 313 (349)
Q Consensus 248 ~~k~~LlVlDdv~~~----~~~~~l~~~~~~~-~~gs~IIiTtR~~---------~~~~~~~~~~~~~~~l~~L~~~ea~ 313 (349)
.-=++++||++-. ..-+.++..++.. ..|..||+|++.. ++...+. ..-++++.+++.+...
T Consensus 175 --~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~--~Gl~~~I~~Pd~e~r~ 250 (408)
T COG0593 175 --SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLE--WGLVVEIEPPDDETRL 250 (408)
T ss_pred --ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHh--ceeEEeeCCCCHHHHH
Confidence 3347889999522 2233444444432 2344899998543 2233334 5688999999999999
Q ss_pred HHHHhhhc
Q 037291 314 EHFCNFAF 321 (349)
Q Consensus 314 ~Lf~~~a~ 321 (349)
.++.+.+-
T Consensus 251 aiL~kka~ 258 (408)
T COG0593 251 AILRKKAE 258 (408)
T ss_pred HHHHHHHH
Confidence 99988664
No 124
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.15 E-value=6.4e-06 Score=76.25 Aligned_cols=90 Identities=16% Similarity=0.170 Sum_probs=60.9
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcC-CcceEEEEeccccccCCCChHHHHHHHHHHhhcccccccC---CCch---
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGE-FDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAG---ANIP--- 240 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~---~~~~--- 240 (349)
....++|+|++|+|||||++.+++.+..+ |+..+|+..+++- .....++++.++..+.......+. ..+.
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER---~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v 243 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDER---PEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMV 243 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCC---CccHHHHHHHhhceEEEecCCCChHHHHHHHHHH
Confidence 45778999999999999999999987655 8889999855432 357888888885544333222211 0111
Q ss_pred -HHHHH-HhCCCeEEEEEeCCC
Q 037291 241 -HFTKE-RVWRMKVLIVLDDVN 260 (349)
Q Consensus 241 -~~~~~-~l~~k~~LlVlDdv~ 260 (349)
+..+. ...+++++|++|++.
T Consensus 244 ~e~Ae~~~~~GkdVVLlIDEit 265 (415)
T TIGR00767 244 IEKAKRLVEHKKDVVILLDSIT 265 (415)
T ss_pred HHHHHHHHHcCCCeEEEEEChh
Confidence 11111 135789999999995
No 125
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=98.14 E-value=6.9e-05 Score=76.84 Aligned_cols=53 Identities=26% Similarity=0.391 Sum_probs=39.9
Q ss_pred CCcccccchhhhHHHhhhhc---CCCCeeEEEEeccCccchHHHHHHHHHhhhcCC
Q 037291 145 NGLVGLNSRIEQIKPFLCMD---LSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEF 197 (349)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~---~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f 197 (349)
...+|.+.-.+.+.+++... .....+++.++|++|+|||++|+.+++.+...|
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence 45788888888888766432 122345789999999999999999999875443
No 126
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.12 E-value=8.2e-05 Score=69.27 Aligned_cols=175 Identities=15% Similarity=0.210 Sum_probs=107.6
Q ss_pred CCCCCcccccchhhhHHHhhhhc-CCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcc--eEEEEeccccccCCCChHH
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMD-LSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDG--SCFMSDVRRNSETGGGLEH 218 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~-~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~~ 218 (349)
..+..++||+.++..+..++... ..+..+.+-|.|-+|.|||.+...++.+....... .+++. ... -.....
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~in-c~s----l~~~~a 221 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYIN-CTS----LTEASA 221 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEe-ecc----ccchHH
Confidence 44678999999999999998754 24557888899999999999999999887655443 34443 211 234455
Q ss_pred HHHHHHHHhhcccccc-cCCCchHHHHHHhCC--CeEEEEEeCCCChhH--HHHHhcccCCC-CCCcEEEEEeCCh----
Q 037291 219 LQKEMLSTILSEKLEV-AGANIPHFTKERVWR--MKVLIVLDDVNEVGQ--LEGLIGELDQF-GPGSRIVVTTRDK---- 288 (349)
Q Consensus 219 l~~~ll~~~~~~~~~~-~~~~~~~~~~~~l~~--k~~LlVlDdv~~~~~--~~~l~~~~~~~-~~gs~IIiTtR~~---- 288 (349)
+...+++.+....... ........+.++... ..+|+|||++|.... -..+...+.|. -+++++|+.---.
T Consensus 222 iF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDl 301 (529)
T KOG2227|consen 222 IFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDL 301 (529)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhH
Confidence 6666666663222221 112333455555543 368999999975431 12222233332 3456665443211
Q ss_pred --hHHHhcC---CCCCcEEEcCCCCHHHHHHHHHhhhc
Q 037291 289 --GVLEKFR---GEEKKIHRVNGLEFEEAFEHFCNFAF 321 (349)
Q Consensus 289 --~~~~~~~---~~~~~~~~l~~L~~~ea~~Lf~~~a~ 321 (349)
..+..+. ...-..+..+|.+.++..++|..+.-
T Consensus 302 TdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~ 339 (529)
T KOG2227|consen 302 TDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLS 339 (529)
T ss_pred HHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHh
Confidence 2222222 11346788899999999999998873
No 127
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=98.10 E-value=9.8e-05 Score=67.53 Aligned_cols=153 Identities=20% Similarity=0.243 Sum_probs=79.7
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccC-CCChHHHHHHHHHHhhcccccccCCCchHHHHHH
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSET-GGGLEHLQKEMLSTILSEKLEVAGANIPHFTKER 246 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~-~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~ 246 (349)
.+..++|||++|+|||.+|+.+++.....| +.....+.... .......+++++... .+.
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~elg~~~----i~vsa~eL~sk~vGEsEk~IR~~F~~A----------------~~~ 206 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKMGIEP----IVMSAGELESENAGEPGKLIRQRYREA----------------ADI 206 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHcCCCe----EEEEHHHhhcCcCCcHHHHHHHHHHHH----------------HHH
Confidence 478899999999999999999999875442 22212111110 112223333333221 111
Q ss_pred --hCCCeEEEEEeCCCCh------------hHH--HHHhcccC--------------CCCCCcEEEEEeCChhHHHhc--
Q 037291 247 --VWRMKVLIVLDDVNEV------------GQL--EGLIGELD--------------QFGPGSRIVVTTRDKGVLEKF-- 294 (349)
Q Consensus 247 --l~~k~~LlVlDdv~~~------------~~~--~~l~~~~~--------------~~~~gs~IIiTtR~~~~~~~~-- 294 (349)
-++++++|+||+++.. .++ ..|+..+. ....+..||.||.+...+...
T Consensus 207 a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALl 286 (413)
T PLN00020 207 IKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLI 286 (413)
T ss_pred hhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHc
Confidence 1457999999998521 111 22332211 113456788888776643221
Q ss_pred C-CCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCcc
Q 037291 295 R-GEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNPL 346 (349)
Q Consensus 295 ~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL 346 (349)
. +.-+..| ...+.++-.+++..+. .....+. .-..++++...|=||
T Consensus 287 RpGRfDk~i--~lPd~e~R~eIL~~~~-r~~~l~~---~dv~~Lv~~f~gq~~ 333 (413)
T PLN00020 287 RDGRMEKFY--WAPTREDRIGVVHGIF-RDDGVSR---EDVVKLVDTFPGQPL 333 (413)
T ss_pred CCCCCCcee--CCCCHHHHHHHHHHHh-ccCCCCH---HHHHHHHHcCCCCCc
Confidence 1 0112333 3455666666666544 3322221 234557777666654
No 128
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.10 E-value=9.1e-05 Score=64.90 Aligned_cols=36 Identities=22% Similarity=0.231 Sum_probs=28.7
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEE
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMS 204 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 204 (349)
...+.++|.+|+|||+||..+++.+...-..++++.
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it 134 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT 134 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 457889999999999999999998765544555554
No 129
>PRK10536 hypothetical protein; Provisional
Probab=98.10 E-value=3.2e-05 Score=67.51 Aligned_cols=53 Identities=17% Similarity=0.163 Sum_probs=39.1
Q ss_pred CCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHh-h-hcCCcceE
Q 037291 144 SNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQ-F-TGEFDGSC 201 (349)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~-~-~~~f~~~~ 201 (349)
...+.++......+..+|... .++.+.|++|+|||+||.+++.. + ...|...+
T Consensus 54 ~~~i~p~n~~Q~~~l~al~~~-----~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIi 108 (262)
T PRK10536 54 TSPILARNEAQAHYLKAIESK-----QLIFATGEAGCGKTWISAAKAAEALIHKDVDRII 108 (262)
T ss_pred CccccCCCHHHHHHHHHHhcC-----CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEE
Confidence 345677888888777777543 58999999999999999999884 3 34444333
No 130
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=98.08 E-value=8e-05 Score=66.34 Aligned_cols=24 Identities=38% Similarity=0.374 Sum_probs=21.0
Q ss_pred eEEEEeccCccchHHHHHHHHHhh
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
..+.|.|++|+|||+||+.+++..
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~l 45 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKR 45 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 456699999999999999999855
No 131
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.08 E-value=5.9e-05 Score=77.04 Aligned_cols=154 Identities=19% Similarity=0.229 Sum_probs=86.2
Q ss_pred CCcccccchhhhHHHhhhhc----------CCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCC
Q 037291 145 NGLVGLNSRIEQIKPFLCMD----------LSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGG 214 (349)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~----------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 214 (349)
..+.|.+...+.|.+.+... .-...+-+.++|++|+|||+||+.+++.....|- .+. .
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi---~v~-~-------- 520 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFI---AVR-G-------- 520 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEE---EEe-h--------
Confidence 45677777777676655321 0123456889999999999999999997653331 111 0
Q ss_pred ChHHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCCh--------------hHHHHHhcccCCC--CCC
Q 037291 215 GLEHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEV--------------GQLEGLIGELDQF--GPG 278 (349)
Q Consensus 215 ~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~--------------~~~~~l~~~~~~~--~~g 278 (349)
..+++...++.. ..+...+...-...+.+|+||+++.. ..+..++..+... ..+
T Consensus 521 ------~~l~~~~vGese----~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~ 590 (733)
T TIGR01243 521 ------PEILSKWVGESE----KAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSN 590 (733)
T ss_pred ------HHHhhcccCcHH----HHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCC
Confidence 011111111100 11112222223456789999998532 1233344444322 234
Q ss_pred cEEEEEeCChhHHHhc--C-CCCCcEEEcCCCCHHHHHHHHHhhh
Q 037291 279 SRIVVTTRDKGVLEKF--R-GEEKKIHRVNGLEFEEAFEHFCNFA 320 (349)
Q Consensus 279 s~IIiTtR~~~~~~~~--~-~~~~~~~~l~~L~~~ea~~Lf~~~a 320 (349)
..||.||...+.+... . ..-+..+.++..+.++-.++|..+.
T Consensus 591 v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~ 635 (733)
T TIGR01243 591 VVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHT 635 (733)
T ss_pred EEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHh
Confidence 4566677665543321 1 1245788999999999999997665
No 132
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.06 E-value=2.3e-05 Score=67.63 Aligned_cols=55 Identities=20% Similarity=0.365 Sum_probs=40.2
Q ss_pred CCCCCcccccchhhhHHHhhhhc-CCCCeeEEEEeccCccchHHHHHHHHHhhhcC
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMD-LSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGE 196 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~-~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 196 (349)
...+.++|.+.+.+.|.+-...= ......-+.+||..|.|||+|++++.+.+...
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~ 79 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQ 79 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhc
Confidence 34567999999888775433210 12345677899999999999999999987654
No 133
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.05 E-value=2e-05 Score=77.87 Aligned_cols=53 Identities=21% Similarity=0.350 Sum_probs=42.8
Q ss_pred CCCCCcccccchhhhHHHhhhhcC--CCCeeEEEEeccCccchHHHHHHHHHhhh
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDL--SDTVQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~--~~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
....+++|-+..++++..+|.... ....++++|+|++|+||||+++.++..+.
T Consensus 81 ~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 81 ETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 556789999999999999887541 12346799999999999999999998653
No 134
>PRK09183 transposase/IS protein; Provisional
Probab=98.05 E-value=1.9e-05 Score=70.10 Aligned_cols=35 Identities=26% Similarity=0.202 Sum_probs=25.9
Q ss_pred eEEEEeccCccchHHHHHHHHHhhhcCCcceEEEE
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMS 204 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 204 (349)
..+.|+|++|+|||+||..++......-..+.|+.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~ 137 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTT 137 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 56779999999999999999887544333334443
No 135
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.04 E-value=4.2e-05 Score=78.13 Aligned_cols=155 Identities=19% Similarity=0.226 Sum_probs=83.8
Q ss_pred CCCcccccchhhhHHHhhhhc----------CCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCC
Q 037291 144 SNGLVGLNSRIEQIKPFLCMD----------LSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETG 213 (349)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~----------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 213 (349)
.+.+.|.+..++.+.+++... .-...+.+.|+|++|+|||+||+.+++.....| +.+. ........
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~---i~i~-~~~i~~~~ 252 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYF---ISIN-GPEIMSKY 252 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeE---EEEe-cHHHhccc
Confidence 345889999999888776431 012346788999999999999999998764332 1221 11110000
Q ss_pred CChHHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCCh-------------hHHHHHhcccCCCC-CCc
Q 037291 214 GGLEHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEV-------------GQLEGLIGELDQFG-PGS 279 (349)
Q Consensus 214 ~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~-------------~~~~~l~~~~~~~~-~gs 279 (349)
.+ . ....+...+.......+.+|+||+++.. .....+...+.... .+.
T Consensus 253 ~g--------------~----~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~ 314 (733)
T TIGR01243 253 YG--------------E----SEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGR 314 (733)
T ss_pred cc--------------H----HHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCC
Confidence 00 0 0011112233333456789999998532 11233433333222 233
Q ss_pred EEEE-EeCChhHHH-hcC--CCCCcEEEcCCCCHHHHHHHHHhhh
Q 037291 280 RIVV-TTRDKGVLE-KFR--GEEKKIHRVNGLEFEEAFEHFCNFA 320 (349)
Q Consensus 280 ~IIi-TtR~~~~~~-~~~--~~~~~~~~l~~L~~~ea~~Lf~~~a 320 (349)
.++| ||.....+. .+. ..-...+.+...+.++-.+++..+.
T Consensus 315 vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~ 359 (733)
T TIGR01243 315 VIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHT 359 (733)
T ss_pred EEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHh
Confidence 3444 554433211 111 0124568888889998888887554
No 136
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.04 E-value=7.1e-05 Score=77.32 Aligned_cols=51 Identities=20% Similarity=0.306 Sum_probs=39.7
Q ss_pred CCCcccccchhhhHHHhhhhcC------CCCeeEEEEeccCccchHHHHHHHHHhhh
Q 037291 144 SNGLVGLNSRIEQIKPFLCMDL------SDTVQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~------~~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
...++|.+..++.+...+.... +.....+.++|++|+|||+||+.+++...
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~ 623 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMF 623 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhh
Confidence 4578999999999888876431 11235788999999999999999998664
No 137
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=98.03 E-value=0.00028 Score=72.04 Aligned_cols=188 Identities=14% Similarity=0.168 Sum_probs=101.6
Q ss_pred hHHHHHHHHHhhhhccccccccc---------CCCCCcccccchhhhHHHhhhhc---CCCCeeEEEEeccCccchHHHH
Q 037291 119 DAELVNKIVEDVLKNLEKITVAT---------DSSNGLVGLNSRIEQIKPFLCMD---LSDTVQIVGIWGMGGIGKTTLA 186 (349)
Q Consensus 119 e~~~i~~iv~~v~~~l~~~~~~~---------~~~~~~vGr~~~~~~l~~~L~~~---~~~~~~~i~I~G~~GiGKTtLa 186 (349)
|+..++...+.+....+...... .-....+|.+.-.+.+.++|... ......++.++|++|+||||+|
T Consensus 287 e~~~~~~yl~~~~~~pw~~~~~~~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~ 366 (784)
T PRK10787 287 EATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLG 366 (784)
T ss_pred hHHHHHHHHHHHHhCCCCCCCcccccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHH
Confidence 77777777777766554433211 11345899999999998888742 1224568999999999999999
Q ss_pred HHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCChhH--
Q 037291 187 EAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEVGQ-- 264 (349)
Q Consensus 187 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~~~-- 264 (349)
+.++..+...|-... .... .+...+...- ....+. ....+...+.. ....+-+++||+++....
T Consensus 367 ~~ia~~l~~~~~~i~----~~~~----~d~~~i~g~~-~~~~g~----~~G~~~~~l~~-~~~~~~villDEidk~~~~~ 432 (784)
T PRK10787 367 QSIAKATGRKYVRMA----LGGV----RDEAEIRGHR-RTYIGS----MPGKLIQKMAK-VGVKNPLFLLDEIDKMSSDM 432 (784)
T ss_pred HHHHHHhCCCEEEEE----cCCC----CCHHHhccch-hccCCC----CCcHHHHHHHh-cCCCCCEEEEEChhhccccc
Confidence 999987654432211 1111 1111111000 000000 00111122222 222345788999963321
Q ss_pred ----HHHHhcccCC---------------CCCCcEEEEEeCChhHHHhcCCCCCcEEEcCCCCHHHHHHHHHhhhc
Q 037291 265 ----LEGLIGELDQ---------------FGPGSRIVVTTRDKGVLEKFRGEEKKIHRVNGLEFEEAFEHFCNFAF 321 (349)
Q Consensus 265 ----~~~l~~~~~~---------------~~~gs~IIiTtR~~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 321 (349)
...+...+.. .-....+|.|+....+...+- ....++++.+++.+|-.++..++..
T Consensus 433 ~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~~i~~aLl-~R~~ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 433 RGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLL-DRMEVIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred CCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCCCCCHHHh-cceeeeecCCCCHHHHHHHHHHhhh
Confidence 2344433321 013344555665443322221 1346899999999999888877764
No 138
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=0.00022 Score=69.83 Aligned_cols=185 Identities=17% Similarity=0.253 Sum_probs=102.1
Q ss_pred hHHHHHHHHHhhhhcccccccc---------cCCCCCcccccchhhhHHHhhhhc---CCCCeeEEEEeccCccchHHHH
Q 037291 119 DAELVNKIVEDVLKNLEKITVA---------TDSSNGLVGLNSRIEQIKPFLCMD---LSDTVQIVGIWGMGGIGKTTLA 186 (349)
Q Consensus 119 e~~~i~~iv~~v~~~l~~~~~~---------~~~~~~~vGr~~~~~~l~~~L~~~---~~~~~~~i~I~G~~GiGKTtLa 186 (349)
|+..++.....+....+....- ..-..+-+|.+.-.+++.++|.-. ..-..++++++||+|+|||+|+
T Consensus 288 E~~ViRnYlDwll~lPW~~~sk~~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLg 367 (782)
T COG0466 288 EATVIRNYLDWLLDLPWGKRSKDKLDLKKAEKILDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLG 367 (782)
T ss_pred hHHHHHHHHHHHHhCCCccccchhhhHHHHHHHhcccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHH
Confidence 6666666666655544433220 012456689999999999888643 1234689999999999999999
Q ss_pred HHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHHHhhcccccccCCCchHHH---HHHhCCCeEEEEEeCCCChh
Q 037291 187 EAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFT---KERVWRMKVLIVLDDVNEVG 263 (349)
Q Consensus 187 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~---~~~l~~k~~LlVlDdv~~~~ 263 (349)
+.+++-+...|-.... -.++..+. +..-.+..+ ..+...+ .+...-++-|++||.++...
T Consensus 368 kSIA~al~RkfvR~sL-GGvrDEAE----IRGHRRTYI------------GamPGrIiQ~mkka~~~NPv~LLDEIDKm~ 430 (782)
T COG0466 368 KSIAKALGRKFVRISL-GGVRDEAE----IRGHRRTYI------------GAMPGKIIQGMKKAGVKNPVFLLDEIDKMG 430 (782)
T ss_pred HHHHHHhCCCEEEEec-CccccHHH----hcccccccc------------ccCChHHHHHHHHhCCcCCeEEeechhhcc
Confidence 9999988766543221 11111110 000000000 1111111 12234567899999996332
Q ss_pred ------HHHHHhcccCC--------------CCCCcEEEEEeC-Chh-HH-HhcCCCCCcEEEcCCCCHHHHHHHHHhhh
Q 037291 264 ------QLEGLIGELDQ--------------FGPGSRIVVTTR-DKG-VL-EKFRGEEKKIHRVNGLEFEEAFEHFCNFA 320 (349)
Q Consensus 264 ------~~~~l~~~~~~--------------~~~gs~IIiTtR-~~~-~~-~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 320 (349)
.-.+++..+.. +.-...+.|||- +-+ +. ..++ .-.++++.+.+.+|-.++-.++.
T Consensus 431 ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlD--RMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 431 SSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLD--RMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred CCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhc--ceeeeeecCCChHHHHHHHHHhc
Confidence 12222222211 011223334443 322 21 1222 45799999999999998888877
Q ss_pred cC
Q 037291 321 FK 322 (349)
Q Consensus 321 ~~ 322 (349)
.+
T Consensus 509 iP 510 (782)
T COG0466 509 IP 510 (782)
T ss_pred ch
Confidence 54
No 139
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.02 E-value=0.00011 Score=75.08 Aligned_cols=164 Identities=16% Similarity=0.168 Sum_probs=88.6
Q ss_pred CCCcccccchhhhHHHhhhhcC------CCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChH
Q 037291 144 SNGLVGLNSRIEQIKPFLCMDL------SDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLE 217 (349)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~------~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 217 (349)
...++|-+..++.+...+.... ......+.++|++|+|||+||+.+++.+... .+.+. ..+... ....
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~---~~~~d-~se~~~-~~~~- 526 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVH---LERFD-MSEYME-KHTV- 526 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCC---eEEEe-Cchhhh-cccH-
Confidence 4567898888888887776421 1124567899999999999999999877322 22222 111111 1111
Q ss_pred HHHHHHHHHhhcccccccCCCchHHHHHHhCCC-eEEEEEeCCCCh--hHHHHHhcccCCC-----------CCCcEEEE
Q 037291 218 HLQKEMLSTILSEKLEVAGANIPHFTKERVWRM-KVLIVLDDVNEV--GQLEGLIGELDQF-----------GPGSRIVV 283 (349)
Q Consensus 218 ~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k-~~LlVlDdv~~~--~~~~~l~~~~~~~-----------~~gs~IIi 283 (349)
+.+.+.....-...-...+.+.++.+ .-+++||+++.. +..+.|+..+... -..+.||+
T Consensus 527 -------~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~ 599 (731)
T TIGR02639 527 -------SRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIM 599 (731)
T ss_pred -------HHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCEEEE
Confidence 12222111110100112334444433 459999999743 4444454443321 12345777
Q ss_pred EeCChh--HH--------------------HhcC----CCCCcEEEcCCCCHHHHHHHHHhhh
Q 037291 284 TTRDKG--VL--------------------EKFR----GEEKKIHRVNGLEFEEAFEHFCNFA 320 (349)
Q Consensus 284 TtR~~~--~~--------------------~~~~----~~~~~~~~l~~L~~~ea~~Lf~~~a 320 (349)
||.... +. ..+. ...+.++...+|+.++..+++....
T Consensus 600 Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L 662 (731)
T TIGR02639 600 TSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFV 662 (731)
T ss_pred CCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHH
Confidence 774311 00 0011 1134788999999999888876543
No 140
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.01 E-value=1.9e-05 Score=62.41 Aligned_cols=34 Identities=32% Similarity=0.432 Sum_probs=26.9
Q ss_pred eEEEEeccCccchHHHHHHHHHhhhcCCcceEEE
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFM 203 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 203 (349)
..+.|+|++|+||||+++.++..+.......+++
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~ 36 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYI 36 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEE
Confidence 5788999999999999999999876554334444
No 141
>CHL00195 ycf46 Ycf46; Provisional
Probab=98.00 E-value=5e-05 Score=73.18 Aligned_cols=156 Identities=18% Similarity=0.175 Sum_probs=82.2
Q ss_pred CCcccccchhhhHHHhh---hhc----CCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChH
Q 037291 145 NGLVGLNSRIEQIKPFL---CMD----LSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLE 217 (349)
Q Consensus 145 ~~~vGr~~~~~~l~~~L---~~~----~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 217 (349)
..+-|.+...+.+.+.. ... .-...+-|.++|++|+|||.+|+.+++.....| +..+....
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~----~~l~~~~l-------- 295 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPL----LRLDVGKL-------- 295 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE----EEEEhHHh--------
Confidence 45667665544444321 110 012356788999999999999999999764322 11111110
Q ss_pred HHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCChh--------------HHHHHhcccCCCCCCcEEEE
Q 037291 218 HLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEVG--------------QLEGLIGELDQFGPGSRIVV 283 (349)
Q Consensus 218 ~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~~--------------~~~~l~~~~~~~~~gs~IIi 283 (349)
.+...+. ....+...+...-...+++|+||+++... .+..++..+.....+..||.
T Consensus 296 ------~~~~vGe----se~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIa 365 (489)
T CHL00195 296 ------FGGIVGE----SESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVA 365 (489)
T ss_pred ------cccccCh----HHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEE
Confidence 0000000 00011122222223468999999996321 11222222222233445667
Q ss_pred EeCChhHHHh-c--CCCCCcEEEcCCCCHHHHHHHHHhhhcC
Q 037291 284 TTRDKGVLEK-F--RGEEKKIHRVNGLEFEEAFEHFCNFAFK 322 (349)
Q Consensus 284 TtR~~~~~~~-~--~~~~~~~~~l~~L~~~ea~~Lf~~~a~~ 322 (349)
||.+...+.. + .+.-+..+.++..+.++-.++|..+.-+
T Consensus 366 TTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~ 407 (489)
T CHL00195 366 TANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQK 407 (489)
T ss_pred ecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhh
Confidence 7776543221 1 1124578899999999999999877643
No 142
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.00 E-value=0.00012 Score=75.91 Aligned_cols=53 Identities=21% Similarity=0.321 Sum_probs=41.1
Q ss_pred CCCcccccchhhhHHHhhhhcC------CCCeeEEEEeccCccchHHHHHHHHHhhhcC
Q 037291 144 SNGLVGLNSRIEQIKPFLCMDL------SDTVQIVGIWGMGGIGKTTLAEAIFDQFTGE 196 (349)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~------~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 196 (349)
...++|.+..++.+...+.... ......+.++|++|+|||++|+.++......
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~ 622 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD 622 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 4568999999999988886531 1124567899999999999999999876443
No 143
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.98 E-value=7.4e-06 Score=68.44 Aligned_cols=36 Identities=28% Similarity=0.289 Sum_probs=26.8
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEE
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMS 204 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 204 (349)
..-+.|+|++|+|||.||..+++....+-..+.|+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~ 82 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT 82 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee
Confidence 356889999999999999999987665444466665
No 144
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.97 E-value=0.00015 Score=66.03 Aligned_cols=90 Identities=12% Similarity=0.224 Sum_probs=61.3
Q ss_pred CCeEEEEEeCCCCh--hHHHHHhcccCCCCCCcEEEEEeCCh-hHHHhcCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCC
Q 037291 249 RMKVLIVLDDVNEV--GQLEGLIGELDQFGPGSRIVVTTRDK-GVLEKFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENH 325 (349)
Q Consensus 249 ~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTtR~~-~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 325 (349)
+++-++|+|+++.. ..-+.++..+.-..+++.+|++|.+. .++..... ....+.+.+++.+++.+.+.... .
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrS-RCq~i~~~~~~~~~~~~~L~~~~----~ 186 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRS-RCQRLEFKLPPAHEALAWLLAQG----V 186 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHh-hheEeeCCCcCHHHHHHHHHHcC----C
Confidence 45668999999754 45667777776556677777777654 44433221 45788999999999998886531 1
Q ss_pred CCchHHHHHHHHHHHhcCCccc
Q 037291 326 CPTNLNWHSRRVVEYAKGNPLV 347 (349)
Q Consensus 326 ~~~~~~~~~~~i~~~~~G~PLa 347 (349)
+. ..+..++..++|.|+.
T Consensus 187 ~~----~~a~~~~~l~~G~p~~ 204 (319)
T PRK08769 187 SE----RAAQEALDAARGHPGL 204 (319)
T ss_pred Ch----HHHHHHHHHcCCCHHH
Confidence 11 2256788999999973
No 145
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.96 E-value=0.00033 Score=60.48 Aligned_cols=176 Identities=16% Similarity=0.114 Sum_probs=97.6
Q ss_pred CCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHHHhhcccccccC---CCchHH
Q 037291 166 SDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAG---ANIPHF 242 (349)
Q Consensus 166 ~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~---~~~~~~ 242 (349)
.++.+++.++|.-|.|||.+++.+...+-..=-..+.+. ....+...+...++..+.......-. +.....
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~------~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~ 121 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVID------KPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRE 121 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEec------CcchhHHHHHHHHHHHhccCccchhHHHHHHHHHH
Confidence 445679999999999999999966554432212222222 22455666777777776652111110 122222
Q ss_pred HHHH-hCCCe-EEEEEeCCCCh--hHHHHH---hcccCCCCCCcEEEEEeCCh-------hHHHhcCCCCCcE-EEcCCC
Q 037291 243 TKER-VWRMK-VLIVLDDVNEV--GQLEGL---IGELDQFGPGSRIVVTTRDK-------GVLEKFRGEEKKI-HRVNGL 307 (349)
Q Consensus 243 ~~~~-l~~k~-~LlVlDdv~~~--~~~~~l---~~~~~~~~~gs~IIiTtR~~-------~~~~~~~~~~~~~-~~l~~L 307 (349)
+... -++++ ..+++|+..+. +.++.+ ...-.....--+|+..-..+ .++..... ...+ |++.|+
T Consensus 122 L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~-R~~ir~~l~P~ 200 (269)
T COG3267 122 LAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQ-RIDIRIELPPL 200 (269)
T ss_pred HHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhh-eEEEEEecCCc
Confidence 2222 24566 99999999533 334433 32222222222344433221 11222221 2234 999999
Q ss_pred CHHHHHHHHHhhhcCCCCCCch-HHHHHHHHHHHhcCCcccc
Q 037291 308 EFEEAFEHFCNFAFKENHCPTN-LNWHSRRVVEYAKGNPLVL 348 (349)
Q Consensus 308 ~~~ea~~Lf~~~a~~~~~~~~~-~~~~~~~i~~~~~G~PLal 348 (349)
+.++...++..+.-+...+.+- ..+....|.....|.|.++
T Consensus 201 ~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~li 242 (269)
T COG3267 201 TEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLI 242 (269)
T ss_pred ChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHH
Confidence 9999988888776443333322 2355678888999999764
No 146
>PRK06526 transposase; Provisional
Probab=97.95 E-value=1.9e-05 Score=69.69 Aligned_cols=28 Identities=29% Similarity=0.167 Sum_probs=23.6
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhhcC
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFTGE 196 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 196 (349)
...+.|+|++|+|||+||..+.......
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~ 125 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQA 125 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHC
Confidence 3568899999999999999999876543
No 147
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.93 E-value=3.9e-05 Score=65.31 Aligned_cols=111 Identities=12% Similarity=0.165 Sum_probs=64.4
Q ss_pred eEEEEeccCccchHHHHHHHHHhhhcCCcceEEE-EeccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHHHhC
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFM-SDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERVW 248 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~-~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~ 248 (349)
..+.|+|+.|+||||++..++..+.......++. .+..+... ... ..+..+ .............++..++
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~--~~~----~~~i~q---~~vg~~~~~~~~~i~~aLr 72 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVH--ESK----RSLINQ---REVGLDTLSFENALKAALR 72 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccc--cCc----cceeee---cccCCCccCHHHHHHHHhc
Confidence 4688999999999999999888775444433333 21111100 000 000000 0011112344566777787
Q ss_pred CCeEEEEEeCCCChhHHHHHhcccCCCCCCcEEEEEeCChhHHH
Q 037291 249 RMKVLIVLDDVNEVGQLEGLIGELDQFGPGSRIVVTTRDKGVLE 292 (349)
Q Consensus 249 ~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IIiTtR~~~~~~ 292 (349)
..+=++++|++.+.+.+...+... ..|..++.|+...+...
T Consensus 73 ~~pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 73 QDPDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSAAK 113 (198)
T ss_pred CCcCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcHHH
Confidence 778899999998777665544432 34556777777665433
No 148
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.93 E-value=2e-05 Score=74.14 Aligned_cols=102 Identities=20% Similarity=0.228 Sum_probs=61.6
Q ss_pred CCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhc--CCcceEEEEeccccccCCCChHHHHHH
Q 037291 145 NGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTG--EFDGSCFMSDVRRNSETGGGLEHLQKE 222 (349)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~--~f~~~~~~~~~~~~~~~~~~~~~l~~~ 222 (349)
..+++.+..++.+...|... +.+.++|++|+|||++|+.+++.+.. .+..+.|+. ++. ..+..++...
T Consensus 175 ~d~~i~e~~le~l~~~L~~~-----~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~Vt----FHp-sySYeDFI~G 244 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK-----KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQ----FHQ-SYSYEDFIQG 244 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC-----CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEe----ecc-cccHHHHhcc
Confidence 45777888888888887754 67889999999999999999997753 345555555 332 3333333321
Q ss_pred HHHHhhcccccc-cCCCc-hHHHHHHh--CCCeEEEEEeCCC
Q 037291 223 MLSTILSEKLEV-AGANI-PHFTKERV--WRMKVLIVLDDVN 260 (349)
Q Consensus 223 ll~~~~~~~~~~-~~~~~-~~~~~~~l--~~k~~LlVlDdv~ 260 (349)
. ....... ...+. ...+.+.. .+++++||+|+++
T Consensus 245 ~----rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEIN 282 (459)
T PRK11331 245 Y----RPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEIN 282 (459)
T ss_pred c----CCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhh
Confidence 1 1111111 01222 22233322 2468999999996
No 149
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.92 E-value=0.00049 Score=62.86 Aligned_cols=90 Identities=10% Similarity=0.129 Sum_probs=61.4
Q ss_pred CCeEEEEEeCCCCh--hHHHHHhcccCCCCCCcEEEEEeCCh-hHHHhcCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCC
Q 037291 249 RMKVLIVLDDVNEV--GQLEGLIGELDQFGPGSRIVVTTRDK-GVLEKFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENH 325 (349)
Q Consensus 249 ~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTtR~~-~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 325 (349)
+++=++|+|+++.. ...+.++..+.-..+++.+|++|.+. .++..... ....+.+.+++.+++.+.+......
T Consensus 106 g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~S-RC~~~~~~~~~~~~~~~~L~~~~~~--- 181 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYS-RCQTWLIHPPEEQQALDWLQAQSSA--- 181 (325)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHh-hceEEeCCCCCHHHHHHHHHHHhcc---
Confidence 45668889999755 45677777777666777788777765 44433211 4578999999999999988775411
Q ss_pred CCchHHHHHHHHHHHhcCCcc
Q 037291 326 CPTNLNWHSRRVVEYAKGNPL 346 (349)
Q Consensus 326 ~~~~~~~~~~~i~~~~~G~PL 346 (349)
.. ..+..++..++|.|+
T Consensus 182 ~~----~~~~~~~~l~~g~p~ 198 (325)
T PRK06871 182 EI----SEILTALRINYGRPL 198 (325)
T ss_pred Ch----HHHHHHHHHcCCCHH
Confidence 11 124566778888885
No 150
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.89 E-value=0.00025 Score=65.36 Aligned_cols=150 Identities=11% Similarity=0.115 Sum_probs=85.5
Q ss_pred ccc-ccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcC---------------------CcceEEEE
Q 037291 147 LVG-LNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGE---------------------FDGSCFMS 204 (349)
Q Consensus 147 ~vG-r~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~---------------------f~~~~~~~ 204 (349)
++| -+.-++.+...+..+ .-.....++|+.|+||||+|+.+++.+-.. ++...++.
T Consensus 7 i~~~q~~~~~~L~~~~~~~--~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~ 84 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKN--RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVA 84 (329)
T ss_pred HHhhHHHHHHHHHHHHHcC--CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEec
Confidence 455 444556666666543 235666899999999999999998865321 11111111
Q ss_pred eccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCCh--hHHHHHhcccCCCCCCcEEE
Q 037291 205 DVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEV--GQLEGLIGELDQFGPGSRIV 282 (349)
Q Consensus 205 ~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~II 282 (349)
.....-...++ +.+...+.. .-..+.+-++|+|+++.. ...+.++..+.....++.+|
T Consensus 85 ----~~~~~i~id~i-r~l~~~~~~---------------~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~I 144 (329)
T PRK08058 85 ----PDGQSIKKDQI-RYLKEEFSK---------------SGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAI 144 (329)
T ss_pred ----cccccCCHHHH-HHHHHHHhh---------------CCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEE
Confidence 00000011111 111111100 002344567899999744 45677777777666777788
Q ss_pred EEeCChh-HHHhcCCCCCcEEEcCCCCHHHHHHHHHhh
Q 037291 283 VTTRDKG-VLEKFRGEEKKIHRVNGLEFEEAFEHFCNF 319 (349)
Q Consensus 283 iTtR~~~-~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 319 (349)
++|.+.. ++.... .....+++.+++.++..+.+...
T Consensus 145 l~t~~~~~ll~TIr-SRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 145 LLTENKHQILPTIL-SRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred EEeCChHhCcHHHH-hhceeeeCCCCCHHHHHHHHHHc
Confidence 7776643 333221 14578999999999998888653
No 151
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.88 E-value=0.00013 Score=62.98 Aligned_cols=177 Identities=16% Similarity=0.185 Sum_probs=101.4
Q ss_pred CCCCcccccchhhh---HHHhhhhc---CCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCCh
Q 037291 143 SSNGLVGLNSRIEQ---IKPFLCMD---LSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGL 216 (349)
Q Consensus 143 ~~~~~vGr~~~~~~---l~~~L~~~---~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 216 (349)
..+..||.+....+ |.+.|... +.-.++.|..+|++|.|||.+|+++++..+.-| ...+
T Consensus 119 t~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~----l~vk----------- 183 (368)
T COG1223 119 TLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPL----LLVK----------- 183 (368)
T ss_pred cHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCce----EEec-----------
Confidence 34567888766544 45555543 234578999999999999999999998754221 1110
Q ss_pred HHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCCh--------------hHHHHHhcccCCC--CCCcE
Q 037291 217 EHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEV--------------GQLEGLIGELDQF--GPGSR 280 (349)
Q Consensus 217 ~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~--------------~~~~~l~~~~~~~--~~gs~ 280 (349)
..+++... .+.....+.+...+.-..-+++++||.++.. +..++++-.+... +.|..
T Consensus 184 ---at~liGeh----VGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVv 256 (368)
T COG1223 184 ---ATELIGEH----VGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVV 256 (368)
T ss_pred ---hHHHHHHH----hhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceE
Confidence 01111111 1111112222223333446899999988632 1345555554432 34667
Q ss_pred EEEEeCChhHHHhcC-CCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCC
Q 037291 281 IVVTTRDKGVLEKFR-GEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGN 344 (349)
Q Consensus 281 IIiTtR~~~~~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~ 344 (349)
.|..|.+..++...- ..-..-++..--+++|-.+++..++-.-+-+.+. -.+.++++++|+
T Consensus 257 tIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~---~~~~~~~~t~g~ 318 (368)
T COG1223 257 TIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDA---DLRYLAAKTKGM 318 (368)
T ss_pred EEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCcccc---CHHHHHHHhCCC
Confidence 777777776654421 1123567777788999999999887332222211 145666777665
No 152
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=7.6e-05 Score=74.58 Aligned_cols=133 Identities=21% Similarity=0.297 Sum_probs=84.8
Q ss_pred CCCcccccchhhhHHHhhhhc------CCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChH
Q 037291 144 SNGLVGLNSRIEQIKPFLCMD------LSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLE 217 (349)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 217 (349)
....+|-+..+..+.+.+... .+.........||.|+|||-||++++..+...=..-+-+. +|.
T Consensus 490 ~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~D----MSE------ 559 (786)
T COG0542 490 KKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRID----MSE------ 559 (786)
T ss_pred hcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeec----hHH------
Confidence 356889999888888777543 1234567788999999999999999997643323333332 221
Q ss_pred HHHHHHHHHhhcccccccC-CCchHHHHHHhCCCeE-EEEEeCCC--ChhHHHHHhcccCCC----C-------CCcEEE
Q 037291 218 HLQKEMLSTILSEKLEVAG-ANIPHFTKERVWRMKV-LIVLDDVN--EVGQLEGLIGELDQF----G-------PGSRIV 282 (349)
Q Consensus 218 ~l~~~ll~~~~~~~~~~~~-~~~~~~~~~~l~~k~~-LlVlDdv~--~~~~~~~l~~~~~~~----~-------~gs~II 282 (349)
..-+.-.+.+.+..++.-. +. -..+.+..+.++| ++.||+++ +++-++-|+..+... + .++-||
T Consensus 560 y~EkHsVSrLIGaPPGYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiII 638 (786)
T COG0542 560 YMEKHSVSRLIGAPPGYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIII 638 (786)
T ss_pred HHHHHHHHHHhCCCCCCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEE
Confidence 1223345666666555422 22 2566777778877 78899996 556666666665431 1 246777
Q ss_pred EEeCC
Q 037291 283 VTTRD 287 (349)
Q Consensus 283 iTtR~ 287 (349)
+||.-
T Consensus 639 mTSN~ 643 (786)
T COG0542 639 MTSNA 643 (786)
T ss_pred Eeccc
Confidence 77753
No 153
>PTZ00494 tuzin-like protein; Provisional
Probab=97.86 E-value=0.00074 Score=63.02 Aligned_cols=212 Identities=14% Similarity=0.135 Sum_probs=121.7
Q ss_pred HHHHHHHHHHhh-------------cccCCCCcccch-h-HHHHHHHHHhhhhcccccc----cccCCCCCcccccchhh
Q 037291 95 VQRWRDALRETS-------------GLAGHESTKFRH-D-AELVNKIVEDVLKNLEKIT----VATDSSNGLVGLNSRIE 155 (349)
Q Consensus 95 v~~wr~al~~~~-------------~~~g~~~~~~~~-e-~~~i~~iv~~v~~~l~~~~----~~~~~~~~~vGr~~~~~ 155 (349)
-+.||-++++-+ ..-||.++++.. + +-...--++...+.+++.. ........+|.|+.+-.
T Consensus 302 ERd~RY~l~KYsG~vSa~~a~Lgv~svFgwN~knYr~qQRs~Ql~~Av~TLsk~~~~~~~~~~~a~a~~~~~V~R~~eE~ 381 (664)
T PTZ00494 302 DTNFRYALAKYKGTMSCIAGVLVVAYVFTANLRAYRRQQRGHQLRTAIETLSKAARPRKEEGMLAAAAEAFEVRREDEEA 381 (664)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccccccccccccccchhhHHH
Confidence 457998888743 233566655542 1 2223334455555443322 22245678999999988
Q ss_pred hHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHHHhhccccccc
Q 037291 156 QIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVA 235 (349)
Q Consensus 156 ~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~ 235 (349)
.+.+.|.......++++.+.|.-|+|||+|++....+ +-...+|+. ++. .++-+..+.+.++....+..
T Consensus 382 ~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrk---E~~paV~VD-VRg-------~EDtLrsVVKALgV~nve~C 450 (664)
T PTZ00494 382 LVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRV---EGVALVHVD-VGG-------TEDTLRSVVRALGVSNVEVC 450 (664)
T ss_pred HHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHH---cCCCeEEEE-ecC-------CcchHHHHHHHhCCCChhhh
Confidence 8888887764567899999999999999999977654 334466775 332 23345566666666555443
Q ss_pred CCCchHHHHH-------HhCCCeEEEEEe--CCCChhH-HHHHhcccCCCCCCcEEEEEeCChhHHHh-cCCCCCcEEEc
Q 037291 236 GANIPHFTKE-------RVWRMKVLIVLD--DVNEVGQ-LEGLIGELDQFGPGSRIVVTTRDKGVLEK-FRGEEKKIHRV 304 (349)
Q Consensus 236 ~~~~~~~~~~-------~l~~k~~LlVlD--dv~~~~~-~~~l~~~~~~~~~gs~IIiTtR~~~~~~~-~~~~~~~~~~l 304 (349)
.+ +++.+.+ ...++.-+||+- +=.+..- ++... .+..-..-++|++----+.+... ........|.+
T Consensus 451 GD-lLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~v-aLacDrRlCHvv~EVplESLT~~n~~LPRLDFy~V 528 (664)
T PTZ00494 451 GD-LLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVV-SLVSDCQACHIVLAVPMKALTPLNVSSRRLDFYCI 528 (664)
T ss_pred cc-HHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHH-HHHccchhheeeeechHhhhchhhccCccceeEec
Confidence 32 2233332 234555666653 2222211 22211 12222345677775554433111 11113468999
Q ss_pred CCCCHHHHHHHHHhh
Q 037291 305 NGLEFEEAFEHFCNF 319 (349)
Q Consensus 305 ~~L~~~ea~~Lf~~~ 319 (349)
++++..+|.++-.+.
T Consensus 529 PnFSr~QAf~YtqH~ 543 (664)
T PTZ00494 529 PPFSRRQAFAYAEHT 543 (664)
T ss_pred CCcCHHHHHHHHhcc
Confidence 999999999876544
No 154
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.86 E-value=0.00042 Score=63.60 Aligned_cols=146 Identities=16% Similarity=0.179 Sum_probs=82.8
Q ss_pred cccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCc---------------------ceEEEEe
Q 037291 147 LVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFD---------------------GSCFMSD 205 (349)
Q Consensus 147 ~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~---------------------~~~~~~~ 205 (349)
++|-+.....+..+.... ......+.++|++|+||||+|..+++.+..... ....+.
T Consensus 3 ~~~~~~~~~~l~~~~~~~-~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~- 80 (325)
T COG0470 3 LVPWQEAVKRLLVQALES-GRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN- 80 (325)
T ss_pred cccchhHHHHHHHHHHhc-CCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEec-
Confidence 566666777777777654 223445889999999999999999997653321 111121
Q ss_pred ccccccCCCC---hHHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCChh--HHHHHhcccCCCCCCcE
Q 037291 206 VRRNSETGGG---LEHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEVG--QLEGLIGELDQFGPGSR 280 (349)
Q Consensus 206 ~~~~~~~~~~---~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ 280 (349)
.+. ... ..+..+.+........ ..++.-++++|+++... ....+...+.-....+.
T Consensus 81 ---~s~-~~~~~i~~~~vr~~~~~~~~~~---------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~~ 141 (325)
T COG0470 81 ---PSD-LRKIDIIVEQVRELAEFLSESP---------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTR 141 (325)
T ss_pred ---ccc-cCCCcchHHHHHHHHHHhccCC---------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeE
Confidence 111 011 1112222221111100 02457789999998653 45666666666677888
Q ss_pred EEEEeCCh-hHHHhcCCCCCcEEEcCCCCHHHHHH
Q 037291 281 IVVTTRDK-GVLEKFRGEEKKIHRVNGLEFEEAFE 314 (349)
Q Consensus 281 IIiTtR~~-~~~~~~~~~~~~~~~l~~L~~~ea~~ 314 (349)
+|++|.+. .++..... ....+++.+.+..+...
T Consensus 142 ~il~~n~~~~il~tI~S-Rc~~i~f~~~~~~~~i~ 175 (325)
T COG0470 142 FILITNDPSKILPTIRS-RCQRIRFKPPSRLEAIA 175 (325)
T ss_pred EEEEcCChhhccchhhh-cceeeecCCchHHHHHH
Confidence 88888744 33332221 45677777754444433
No 155
>PRK06921 hypothetical protein; Provisional
Probab=97.86 E-value=7.2e-05 Score=66.63 Aligned_cols=36 Identities=19% Similarity=0.243 Sum_probs=29.0
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhhcC-CcceEEEE
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFTGE-FDGSCFMS 204 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 204 (349)
...+.++|.+|+|||+||..+++.+... ...++|+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 4678899999999999999999987655 44456665
No 156
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.85 E-value=0.00011 Score=74.39 Aligned_cols=51 Identities=20% Similarity=0.212 Sum_probs=39.6
Q ss_pred CCCcccccchhhhHHHhhhhc------CCCCeeEEEEeccCccchHHHHHHHHHhhh
Q 037291 144 SNGLVGLNSRIEQIKPFLCMD------LSDTVQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
...++|-+..++.+...+... .......+.++|++|+|||+||+.++..+.
T Consensus 457 ~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 457 KMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred cceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 356789999998888887632 012245788999999999999999998773
No 157
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.84 E-value=0.00024 Score=65.39 Aligned_cols=90 Identities=12% Similarity=0.138 Sum_probs=61.5
Q ss_pred CCeEEEEEeCCCCh--hHHHHHhcccCCCCCCcEEEEEeCCh-hHHHhcCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCC
Q 037291 249 RMKVLIVLDDVNEV--GQLEGLIGELDQFGPGSRIVVTTRDK-GVLEKFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENH 325 (349)
Q Consensus 249 ~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTtR~~-~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 325 (349)
+++=++|+|+++.. ...+.++..+.-..+++.+|++|.+. .++..... ....+.+.+++.+++.+.+.... +.
T Consensus 107 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrS-RCq~~~~~~~~~~~~~~~L~~~~---~~ 182 (334)
T PRK07993 107 GGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRS-RCRLHYLAPPPEQYALTWLSREV---TM 182 (334)
T ss_pred CCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHh-ccccccCCCCCHHHHHHHHHHcc---CC
Confidence 45668999999754 45677777777666777777777664 44433221 45678999999999998886542 11
Q ss_pred CCchHHHHHHHHHHHhcCCcc
Q 037291 326 CPTNLNWHSRRVVEYAKGNPL 346 (349)
Q Consensus 326 ~~~~~~~~~~~i~~~~~G~PL 346 (349)
+ .+.+..++..++|.|+
T Consensus 183 -~---~~~a~~~~~la~G~~~ 199 (334)
T PRK07993 183 -S---QDALLAALRLSAGAPG 199 (334)
T ss_pred -C---HHHHHHHHHHcCCCHH
Confidence 1 1235678889999885
No 158
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.00073 Score=64.01 Aligned_cols=133 Identities=23% Similarity=0.194 Sum_probs=77.1
Q ss_pred CCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHHH
Q 037291 167 DTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKER 246 (349)
Q Consensus 167 ~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~ 246 (349)
.....+.+.|++|+|||+||..++.. ..|+.+-.++ ... .-++..-.+.. .+-....+.
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~--S~FPFvKiiS----pe~-miG~sEsaKc~--------------~i~k~F~DA 594 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALS--SDFPFVKIIS----PED-MIGLSESAKCA--------------HIKKIFEDA 594 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhh--cCCCeEEEeC----hHH-ccCccHHHHHH--------------HHHHHHHHh
Confidence 44667789999999999999999864 5788665554 110 11111111110 000122222
Q ss_pred hCCCeEEEEEeCCCChhH------------HHHH---hcccCCCCCCcEEEEEeCChhHHHhcCC--CCCcEEEcCCCCH
Q 037291 247 VWRMKVLIVLDDVNEVGQ------------LEGL---IGELDQFGPGSRIVVTTRDKGVLEKFRG--EEKKIHRVNGLEF 309 (349)
Q Consensus 247 l~~k~~LlVlDdv~~~~~------------~~~l---~~~~~~~~~gs~IIiTtR~~~~~~~~~~--~~~~~~~l~~L~~ 309 (349)
-+..--.||+||++..-+ ++.+ +...+..+..--|+-||....++..++. +-...++|+.++.
T Consensus 595 YkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~ 674 (744)
T KOG0741|consen 595 YKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTT 674 (744)
T ss_pred hcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCc
Confidence 234456899999964432 2233 2233332334455567777788887763 2347889999987
Q ss_pred -HHHHHHHHhhh
Q 037291 310 -EEAFEHFCNFA 320 (349)
Q Consensus 310 -~ea~~Lf~~~a 320 (349)
++..+.++..-
T Consensus 675 ~~~~~~vl~~~n 686 (744)
T KOG0741|consen 675 GEQLLEVLEELN 686 (744)
T ss_pred hHHHHHHHHHcc
Confidence 77777776543
No 159
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.81 E-value=0.00015 Score=74.76 Aligned_cols=52 Identities=21% Similarity=0.332 Sum_probs=40.3
Q ss_pred CCCcccccchhhhHHHhhhhc------CCCCeeEEEEeccCccchHHHHHHHHHhhhc
Q 037291 144 SNGLVGLNSRIEQIKPFLCMD------LSDTVQIVGIWGMGGIGKTTLAEAIFDQFTG 195 (349)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~ 195 (349)
...++|-+..++.+.+.+... .+....++.++|++|+|||.||+.+++.+..
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~ 622 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYG 622 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhC
Confidence 457899999999988877532 1223457889999999999999999987643
No 160
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.80 E-value=0.00055 Score=56.27 Aligned_cols=137 Identities=15% Similarity=0.228 Sum_probs=72.7
Q ss_pred cchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcC--------------------CcceEEEEeccccc
Q 037291 151 NSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGE--------------------FDGSCFMSDVRRNS 210 (349)
Q Consensus 151 ~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~--------------------f~~~~~~~~~~~~~ 210 (349)
+...+.|...+..+ .-...+.++|+.|+||+++|..+++.+-.. +....|+... ...
T Consensus 3 ~~~~~~L~~~~~~~--~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~-~~~ 79 (162)
T PF13177_consen 3 EEIIELLKNLIKSG--RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPD-KKK 79 (162)
T ss_dssp HHHHHHHHHHHHCT--C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETT-TSS
T ss_pred HHHHHHHHHHHHcC--CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecc-ccc
Confidence 34455555555443 234567899999999999999999864221 2222333211 000
Q ss_pred cCCCChHHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCCh--hHHHHHhcccCCCCCCcEEEEEeCCh
Q 037291 211 ETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEV--GQLEGLIGELDQFGPGSRIVVTTRDK 288 (349)
Q Consensus 211 ~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTtR~~ 288 (349)
. .-...++ +.+...+.... ..++.=++||||++.. +..+.|+..+.....++.+|++|++.
T Consensus 80 ~-~i~i~~i-r~i~~~~~~~~---------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 80 K-SIKIDQI-REIIEFLSLSP---------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp S-SBSHHHH-HHHHHHCTSS----------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred c-hhhHHHH-HHHHHHHHHHH---------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECCh
Confidence 0 1112221 12222221110 1234668899999754 56778888877767889999888876
Q ss_pred h-HHHhcCCCCCcEEEcCCCC
Q 037291 289 G-VLEKFRGEEKKIHRVNGLE 308 (349)
Q Consensus 289 ~-~~~~~~~~~~~~~~l~~L~ 308 (349)
. ++..... ....+.+.+|+
T Consensus 143 ~~il~TI~S-Rc~~i~~~~ls 162 (162)
T PF13177_consen 143 SKILPTIRS-RCQVIRFRPLS 162 (162)
T ss_dssp GGS-HHHHT-TSEEEEE----
T ss_pred HHChHHHHh-hceEEecCCCC
Confidence 5 3333211 45677777664
No 161
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.80 E-value=0.00011 Score=70.65 Aligned_cols=185 Identities=18% Similarity=0.210 Sum_probs=106.0
Q ss_pred CCCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcC------CcceEEEEeccccccCCCC
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGE------FDGSCFMSDVRRNSETGGG 215 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~------f~~~~~~~~~~~~~~~~~~ 215 (349)
....++||-+.-...|...+... .-..--..+|+-|+||||+|+.++..+-.. .-..|..+ .++.. . .
T Consensus 13 ~~F~evvGQe~v~~~L~nal~~~--ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~C--k~I~~-g-~ 86 (515)
T COG2812 13 KTFDDVVGQEHVVKTLSNALENG--RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISC--KEINE-G-S 86 (515)
T ss_pred ccHHHhcccHHHHHHHHHHHHhC--cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhh--Hhhhc-C-C
Confidence 34467899999999999888765 123445689999999999999999854211 11112221 01110 0 0
Q ss_pred hHHHH-HHHHHHhhcccccccCCCchHHHHHHh-----CCCeEEEEEeCCC--ChhHHHHHhcccCCCCCCcEEEEEeCC
Q 037291 216 LEHLQ-KEMLSTILSEKLEVAGANIPHFTKERV-----WRMKVLIVLDDVN--EVGQLEGLIGELDQFGPGSRIVVTTRD 287 (349)
Q Consensus 216 ~~~l~-~~ll~~~~~~~~~~~~~~~~~~~~~~l-----~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IIiTtR~ 287 (349)
..++. -+.++.-+. +.+ +.+.+.. .++.=+.|+|+|+ ....++.++..+.-..+....|+.|.+
T Consensus 87 ~~DviEiDaASn~gV-------ddi-R~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe 158 (515)
T COG2812 87 LIDVIEIDAASNTGV-------DDI-REIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTE 158 (515)
T ss_pred cccchhhhhhhccCh-------HHH-HHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCC
Confidence 11110 000110000 122 2222221 3456688999996 445688888887754555555655555
Q ss_pred hh-HHH-hcCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCC
Q 037291 288 KG-VLE-KFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGN 344 (349)
Q Consensus 288 ~~-~~~-~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~ 344 (349)
.+ +.. .+. .+..|.++.|+.++-...+...+-.++-.. ..+....|.+..+|.
T Consensus 159 ~~Kip~TIlS--Rcq~f~fkri~~~~I~~~L~~i~~~E~I~~--e~~aL~~ia~~a~Gs 213 (515)
T COG2812 159 PQKIPNTILS--RCQRFDFKRLDLEEIAKHLAAILDKEGINI--EEDALSLIARAAEGS 213 (515)
T ss_pred cCcCchhhhh--ccccccccCCCHHHHHHHHHHHHHhcCCcc--CHHHHHHHHHHcCCC
Confidence 43 322 223 457899999999998888887774443222 223455566666663
No 162
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.76 E-value=0.0013 Score=61.37 Aligned_cols=71 Identities=14% Similarity=0.084 Sum_probs=44.8
Q ss_pred eEEEEEeCCCChh--------HHHHHhcccCCCCCCcEEEEEeCChhHH----HhcCCCCCcEEEcCCCCHHHHHHHHHh
Q 037291 251 KVLIVLDDVNEVG--------QLEGLIGELDQFGPGSRIVVTTRDKGVL----EKFRGEEKKIHRVNGLEFEEAFEHFCN 318 (349)
Q Consensus 251 ~~LlVlDdv~~~~--------~~~~l~~~~~~~~~gs~IIiTtR~~~~~----~~~~~~~~~~~~l~~L~~~ea~~Lf~~ 318 (349)
+-++|+||+.... .+......+-. .+=.+||++|-+.... ..+...+...+.+...+.+.|.++...
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~-~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~ 227 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLVQ-NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLS 227 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHHh-cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHH
Confidence 6799999993211 11112211111 2345888888776443 333334568889999999999999988
Q ss_pred hhcC
Q 037291 319 FAFK 322 (349)
Q Consensus 319 ~a~~ 322 (349)
+.-.
T Consensus 228 ~L~~ 231 (431)
T PF10443_consen 228 QLDE 231 (431)
T ss_pred Hhcc
Confidence 8743
No 163
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.76 E-value=0.0011 Score=62.93 Aligned_cols=29 Identities=31% Similarity=0.399 Sum_probs=25.4
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcC
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGE 196 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 196 (349)
...++.++|++|+||||+|..++..+...
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 46789999999999999999999877654
No 164
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.76 E-value=0.00059 Score=62.55 Aligned_cols=68 Identities=13% Similarity=0.179 Sum_probs=42.7
Q ss_pred eEEEEEeCCCCh--hHHHHHhcccCCCCCCcEEEEEeCChh-HHHhcCCCCCcEEEcCCCCHHHHHHHHHhh
Q 037291 251 KVLIVLDDVNEV--GQLEGLIGELDQFGPGSRIVVTTRDKG-VLEKFRGEEKKIHRVNGLEFEEAFEHFCNF 319 (349)
Q Consensus 251 ~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTtR~~~-~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 319 (349)
+-++|+|+++.. ...+.+...+.....++.+|++|.+.. ++..+. .....+.+.+++.+++.+.+...
T Consensus 114 ~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~-SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 114 LRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIK-SRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred ceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHH-HHhhhhcCCCCCHHHHHHHHHhc
Confidence 445566888644 344555555544345566777777654 333321 14578899999999999888654
No 165
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.00049 Score=67.30 Aligned_cols=156 Identities=19% Similarity=0.187 Sum_probs=81.8
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHHHhC
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERVW 248 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~ 248 (349)
.+.|.|.|+.|+|||+||+++++.+... ..+++..+....-....+.++++.+- ..+.+.+.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~--~~~hv~~v~Cs~l~~~~~e~iQk~l~----------------~vfse~~~ 492 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKD--LIAHVEIVSCSTLDGSSLEKIQKFLN----------------NVFSEALW 492 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccc--cceEEEEEechhccchhHHHHHHHHH----------------HHHHHHHh
Confidence 4678899999999999999999987633 23333322111111223444443332 33445566
Q ss_pred CCeEEEEEeCCCChh--------H-------HH----HHhcccCCCCCCcEEEEEeCChhHHHhc-C--CCCCcEEEcCC
Q 037291 249 RMKVLIVLDDVNEVG--------Q-------LE----GLIGELDQFGPGSRIVVTTRDKGVLEKF-R--GEEKKIHRVNG 306 (349)
Q Consensus 249 ~k~~LlVlDdv~~~~--------~-------~~----~l~~~~~~~~~gs~IIiTtR~~~~~~~~-~--~~~~~~~~l~~ 306 (349)
..+-++||||++-.. + +. ++...+...+..-.+|.|......++.. . ........+++
T Consensus 493 ~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~a 572 (952)
T KOG0735|consen 493 YAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPA 572 (952)
T ss_pred hCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCC
Confidence 778999999995221 1 11 1112222212222455555543322221 0 01346678899
Q ss_pred CCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCC
Q 037291 307 LEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGN 344 (349)
Q Consensus 307 L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~ 344 (349)
+...+-.++++... +....... .+...-+..+|+|.
T Consensus 573 p~~~~R~~IL~~~~-s~~~~~~~-~~dLd~ls~~TEGy 608 (952)
T KOG0735|consen 573 PAVTRRKEILTTIF-SKNLSDIT-MDDLDFLSVKTEGY 608 (952)
T ss_pred cchhHHHHHHHHHH-Hhhhhhhh-hHHHHHHHHhcCCc
Confidence 98888777776544 22211111 12223366666664
No 166
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=0.00029 Score=67.70 Aligned_cols=95 Identities=21% Similarity=0.264 Sum_probs=59.6
Q ss_pred CCCcccccchhhhHHHhhhhcCC---------CCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCC
Q 037291 144 SNGLVGLNSRIEQIKPFLCMDLS---------DTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGG 214 (349)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~---------~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 214 (349)
...+=|.+..+.++.+++..-.. ...+-|.+||++|+|||.||++++.+..--|- . ++
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~-----~----is---- 255 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFL-----S----IS---- 255 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceE-----e----ec----
Confidence 45677889988888877643211 23577889999999999999999998753332 1 11
Q ss_pred ChHHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCC
Q 037291 215 GLEHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVN 260 (349)
Q Consensus 215 ~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~ 260 (349)
..++++.+.++.. ..+.+.+.+.-..-++++++|+++
T Consensus 256 -----ApeivSGvSGESE----kkiRelF~~A~~~aPcivFiDeID 292 (802)
T KOG0733|consen 256 -----APEIVSGVSGESE----KKIRELFDQAKSNAPCIVFIDEID 292 (802)
T ss_pred -----chhhhcccCcccH----HHHHHHHHHHhccCCeEEEeeccc
Confidence 1123333322211 222233333345569999999996
No 167
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.74 E-value=0.00019 Score=65.15 Aligned_cols=117 Identities=16% Similarity=0.229 Sum_probs=63.0
Q ss_pred ccchhhhHHHhhhhcCC-CCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHHHhh
Q 037291 150 LNSRIEQIKPFLCMDLS-DTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTIL 228 (349)
Q Consensus 150 r~~~~~~l~~~L~~~~~-~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~ 228 (349)
+...+....+++..-.. ....-+.|+|..|+|||.||.++++.+...-..+.|+. . ..++..+.....
T Consensus 136 ~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~----~-------~~l~~~lk~~~~ 204 (306)
T PRK08939 136 RLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH----F-------PEFIRELKNSIS 204 (306)
T ss_pred HHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE----H-------HHHHHHHHHHHh
Confidence 33334444445543211 13467889999999999999999998865444455554 1 123333333321
Q ss_pred cccccccCCCchHHHHHHhCCCeEEEEEeCCC--ChhHHH--HHhccc-C-CCCCCcEEEEEeC
Q 037291 229 SEKLEVAGANIPHFTKERVWRMKVLIVLDDVN--EVGQLE--GLIGEL-D-QFGPGSRIVVTTR 286 (349)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~--~~~~~~--~l~~~~-~-~~~~gs~IIiTtR 286 (349)
.. .....+. .+ .+-=||||||+. ....|. .++..+ . +...+..+|+||.
T Consensus 205 ~~-------~~~~~l~-~l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 205 DG-------SVKEKID-AV-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred cC-------cHHHHHH-Hh-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 11 1112222 22 245689999994 333342 233322 1 1124556888887
No 168
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.73 E-value=0.00015 Score=69.07 Aligned_cols=46 Identities=22% Similarity=0.166 Sum_probs=39.3
Q ss_pred CCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhh
Q 037291 144 SNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
...++||+..++.+...+..+ ..|.|.|++|+|||+||+.+.....
T Consensus 19 ~~~i~gre~vI~lll~aalag-----~hVLL~GpPGTGKT~LAraLa~~~~ 64 (498)
T PRK13531 19 EKGLYERSHAIRLCLLAALSG-----ESVFLLGPPGIAKSLIARRLKFAFQ 64 (498)
T ss_pred hhhccCcHHHHHHHHHHHccC-----CCEEEECCCChhHHHHHHHHHHHhc
Confidence 456899999999988877665 5678999999999999999998654
No 169
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.00068 Score=67.94 Aligned_cols=156 Identities=17% Similarity=0.183 Sum_probs=86.0
Q ss_pred CCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcC-Cc-----ceEEEEeccccccCCCChH
Q 037291 144 SNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGE-FD-----GSCFMSDVRRNSETGGGLE 217 (349)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~-f~-----~~~~~~~~~~~~~~~~~~~ 217 (349)
.+..+||+.|++++.+.|... ....+ .++|.+|+|||+++.-++.++-.. .+ ..++--++...
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR-~KNNP--vLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~L-------- 237 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRR-TKNNP--VLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSL-------- 237 (786)
T ss_pred CCCCcChHHHHHHHHHHHhcc-CCCCC--eEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHH--------
Confidence 356899999999999999876 22222 367999999999999999986432 21 12222211111
Q ss_pred HHHHHHHHHhhcccccccC-CCchHHHHHHhCCCeEEEEEeCCCCh-----------hHHHHHhcccCCCCCCcEEEEEe
Q 037291 218 HLQKEMLSTILSEKLEVAG-ANIPHFTKERVWRMKVLIVLDDVNEV-----------GQLEGLIGELDQFGPGSRIVVTT 285 (349)
Q Consensus 218 ~l~~~ll~~~~~~~~~~~~-~~~~~~~~~~l~~k~~LlVlDdv~~~-----------~~~~~l~~~~~~~~~gs~IIiTt 285 (349)
.-+....-.. +.+-..+.+.-...+++|++|.++.. +.-+-+.+.+.. |.--.|-.||
T Consensus 238 ---------vAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLAR-GeL~~IGATT 307 (786)
T COG0542 238 ---------VAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALAR-GELRCIGATT 307 (786)
T ss_pred ---------hccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhc-CCeEEEEecc
Confidence 0111111111 12212222333345899999998522 122223333321 2223455666
Q ss_pred CChh--HHHhcC--CCCCcEEEcCCCCHHHHHHHHHhhh
Q 037291 286 RDKG--VLEKFR--GEEKKIHRVNGLEFEEAFEHFCNFA 320 (349)
Q Consensus 286 R~~~--~~~~~~--~~~~~~~~l~~L~~~ea~~Lf~~~a 320 (349)
-++- ....-. ....+.+.|...+.+++.++++-..
T Consensus 308 ~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 308 LDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 5431 111100 0145789999999999999987443
No 170
>PHA00729 NTP-binding motif containing protein
Probab=97.72 E-value=0.00034 Score=60.14 Aligned_cols=27 Identities=30% Similarity=0.278 Sum_probs=23.5
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
+...|.|+|.+|+||||||..+++++.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 445788999999999999999998763
No 171
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.71 E-value=0.00022 Score=73.69 Aligned_cols=133 Identities=16% Similarity=0.205 Sum_probs=72.5
Q ss_pred CCCcccccchhhhHHHhhhhcC------CCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChH
Q 037291 144 SNGLVGLNSRIEQIKPFLCMDL------SDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLE 217 (349)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~------~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 217 (349)
...++|-+..++.+...+.... +.....+.++|++|+|||+||+.+++.+...-...+.+. ..+... .....
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d-~s~~~~-~~~~~ 585 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLD-MSEYME-KHTVS 585 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEE-chhccc-cccHH
Confidence 4578899988888887775321 112346678999999999999999987643322222222 222211 11111
Q ss_pred HHHHHHHHHhhcccccccC-CCchHHHHHHhCCCe-EEEEEeCCCC--hhHHHHHhcccCCC-----------CCCcEEE
Q 037291 218 HLQKEMLSTILSEKLEVAG-ANIPHFTKERVWRMK-VLIVLDDVNE--VGQLEGLIGELDQF-----------GPGSRIV 282 (349)
Q Consensus 218 ~l~~~ll~~~~~~~~~~~~-~~~~~~~~~~l~~k~-~LlVlDdv~~--~~~~~~l~~~~~~~-----------~~gs~II 282 (349)
. +.+..+..-. +.. ..+.+.++.++ -+++||+++. .+.++.|+..+... ...+.+|
T Consensus 586 ~--------l~g~~~gyvg~~~~-~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I 656 (821)
T CHL00095 586 K--------LIGSPPGYVGYNEG-GQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLII 656 (821)
T ss_pred H--------hcCCCCcccCcCcc-chHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEE
Confidence 1 1221111111 111 23445555454 5899999974 34455555444321 1356677
Q ss_pred EEeCC
Q 037291 283 VTTRD 287 (349)
Q Consensus 283 iTtR~ 287 (349)
+||..
T Consensus 657 ~Tsn~ 661 (821)
T CHL00095 657 MTSNL 661 (821)
T ss_pred EeCCc
Confidence 77664
No 172
>PRK04132 replication factor C small subunit; Provisional
Probab=97.71 E-value=0.00058 Score=69.63 Aligned_cols=150 Identities=17% Similarity=0.162 Sum_probs=90.2
Q ss_pred Eec--cCccchHHHHHHHHHhhh-cCCcc-eEEEEeccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHHHhCC
Q 037291 174 IWG--MGGIGKTTLAEAIFDQFT-GEFDG-SCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERVWR 249 (349)
Q Consensus 174 I~G--~~GiGKTtLa~~~~~~~~-~~f~~-~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~ 249 (349)
+.| |.++||||+|..+++++- +.+.. ...+. .+. ..+... .++++..+...... ...
T Consensus 569 ~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElN----ASd-~rgid~-IR~iIk~~a~~~~~-------------~~~ 629 (846)
T PRK04132 569 IGGNLPTVLHNTTAALALARELFGENWRHNFLELN----ASD-ERGINV-IREKVKEFARTKPI-------------GGA 629 (846)
T ss_pred hcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEe----CCC-cccHHH-HHHHHHHHHhcCCc-------------CCC
Confidence 347 889999999999999863 22332 23332 222 223333 33333332211100 012
Q ss_pred CeEEEEEeCCCCh--hHHHHHhcccCCCCCCcEEEEEeCChh-HHHhcCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCC
Q 037291 250 MKVLIVLDDVNEV--GQLEGLIGELDQFGPGSRIVVTTRDKG-VLEKFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHC 326 (349)
Q Consensus 250 k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTtR~~~-~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 326 (349)
+.-++|||+++.. ...+.|...+......+++|+++.+.. +...+.. .+..+++.+++.++..+.+...+-.++-.
T Consensus 630 ~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrS-RC~~i~F~~ls~~~i~~~L~~I~~~Egi~ 708 (846)
T PRK04132 630 SFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQS-RCAIFRFRPLRDEDIAKRLRYIAENEGLE 708 (846)
T ss_pred CCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhh-hceEEeCCCCCHHHHHHHHHHHHHhcCCC
Confidence 3579999999865 356677777766556777777766553 3333221 46799999999999988887765433211
Q ss_pred CchHHHHHHHHHHHhcCCc
Q 037291 327 PTNLNWHSRRVVEYAKGNP 345 (349)
Q Consensus 327 ~~~~~~~~~~i~~~~~G~P 345 (349)
. ..+....|++.++|.+
T Consensus 709 i--~~e~L~~Ia~~s~GDl 725 (846)
T PRK04132 709 L--TEEGLQAILYIAEGDM 725 (846)
T ss_pred C--CHHHHHHHHHHcCCCH
Confidence 1 1345788889999876
No 173
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.71 E-value=0.002 Score=59.31 Aligned_cols=87 Identities=15% Similarity=0.196 Sum_probs=58.6
Q ss_pred CCeEEEEEeCCCCh--hHHHHHhcccCCCCCCcEEEEEeCC-hhHHHhcCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCC
Q 037291 249 RMKVLIVLDDVNEV--GQLEGLIGELDQFGPGSRIVVTTRD-KGVLEKFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENH 325 (349)
Q Consensus 249 ~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTtR~-~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 325 (349)
+++=++|+|+++.. ...+.++..+.-..+++.+|++|.+ ..++..... ....+.+.+++.++..+.+.....
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~S-Rcq~i~~~~~~~~~~~~~L~~~~~---- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILS-RCRQFPMTVPAPEAAAAWLAAQGV---- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHh-cCEEEEecCCCHHHHHHHHHHcCC----
Confidence 34558889999744 5677788777766677767766655 444433221 457899999999999998876521
Q ss_pred CCchHHHHHHHHHHHhcCCcc
Q 037291 326 CPTNLNWHSRRVVEYAKGNPL 346 (349)
Q Consensus 326 ~~~~~~~~~~~i~~~~~G~PL 346 (349)
++ ...++..++|.|+
T Consensus 206 -~~-----~~~~l~~~~Gsp~ 220 (342)
T PRK06964 206 -AD-----ADALLAEAGGAPL 220 (342)
T ss_pred -Ch-----HHHHHHHcCCCHH
Confidence 11 2235677888885
No 174
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.70 E-value=0.00016 Score=66.29 Aligned_cols=35 Identities=20% Similarity=0.296 Sum_probs=28.9
Q ss_pred eEEEEeccCccchHHHHHHHHHhhhcCCcceEEEE
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMS 204 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 204 (349)
..+.|+|++|+|||+||..+++.+...-..+.|+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 66889999999999999999998765544566665
No 175
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.00012 Score=70.81 Aligned_cols=134 Identities=22% Similarity=0.269 Sum_probs=77.0
Q ss_pred CCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHHH
Q 037291 167 DTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKER 246 (349)
Q Consensus 167 ~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~ 246 (349)
...+-|.++|++|+|||++|+.+++.-...|-.+ . ..++++...++.. ..+.+.+.+.
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsv---------k---------gpEL~sk~vGeSE----r~ir~iF~kA 523 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSV---------K---------GPELFSKYVGESE----RAIREVFRKA 523 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhhhcCCeeec---------c---------CHHHHHHhcCchH----HHHHHHHHHH
Confidence 4567888999999999999999999766554321 1 0122222222211 1121222222
Q ss_pred hCCCeEEEEEeCCCCh-------------hHHHHHhcccCCCCCCcEE--EEEe-CChhHHHh-cC-CCCCcEEEcCCCC
Q 037291 247 VWRMKVLIVLDDVNEV-------------GQLEGLIGELDQFGPGSRI--VVTT-RDKGVLEK-FR-GEEKKIHRVNGLE 308 (349)
Q Consensus 247 l~~k~~LlVlDdv~~~-------------~~~~~l~~~~~~~~~gs~I--IiTt-R~~~~~~~-~~-~~~~~~~~l~~L~ 308 (349)
-.--+.++.||.++.. ..+..++..+........| |..| |...+-.. +. +..+.++.++.-+
T Consensus 524 R~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD 603 (693)
T KOG0730|consen 524 RQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPD 603 (693)
T ss_pred hhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCcc
Confidence 2344789999988632 1355666666544443333 3333 33322111 11 1256788888888
Q ss_pred HHHHHHHHHhhhcC
Q 037291 309 FEEAFEHFCNFAFK 322 (349)
Q Consensus 309 ~~ea~~Lf~~~a~~ 322 (349)
.+.-.++|..++-+
T Consensus 604 ~~aR~~Ilk~~~kk 617 (693)
T KOG0730|consen 604 LEARLEILKQCAKK 617 (693)
T ss_pred HHHHHHHHHHHHhc
Confidence 88889999988743
No 176
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.66 E-value=6.5e-05 Score=65.22 Aligned_cols=35 Identities=29% Similarity=0.399 Sum_probs=29.8
Q ss_pred eEEEEeccCccchHHHHHHHHHhhhcCCcceEEEE
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMS 204 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 204 (349)
-.++|.|.+|+|||||+..+.......|.++..+.
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t 48 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLIT 48 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEe
Confidence 46779999999999999999999888997665554
No 177
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.65 E-value=7.6e-05 Score=59.61 Aligned_cols=22 Identities=41% Similarity=0.455 Sum_probs=20.7
Q ss_pred EEEeccCccchHHHHHHHHHhh
Q 037291 172 VGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 172 i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
|.|+|++|+|||+||+.+++.+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999987
No 178
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.00038 Score=62.00 Aligned_cols=137 Identities=17% Similarity=0.262 Sum_probs=70.4
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhh----cCCcceEEEEeccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHH
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFT----GEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTK 244 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~----~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~ 244 (349)
.++|.++||+|.|||+|++++++++. ..|.....+. +.. .++....++.-+... ..+...+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liE----ins-----hsLFSKWFsESgKlV-----~kmF~kI~ 242 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIE----INS-----HSLFSKWFSESGKLV-----AKMFQKIQ 242 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEE----Eeh-----hHHHHHHHhhhhhHH-----HHHHHHHH
Confidence 58999999999999999999999653 3455444443 111 122222222211100 12234455
Q ss_pred HHhCCCe--EEEEEeCCCChh-----------------HHHHHhcccCCCCC-CcEEEEEeCC-hhHHHh-cCCCCCcEE
Q 037291 245 ERVWRMK--VLIVLDDVNEVG-----------------QLEGLIGELDQFGP-GSRIVVTTRD-KGVLEK-FRGEEKKIH 302 (349)
Q Consensus 245 ~~l~~k~--~LlVlDdv~~~~-----------------~~~~l~~~~~~~~~-gs~IIiTtR~-~~~~~~-~~~~~~~~~ 302 (349)
+.+.++. +++.+|.|+... ..++++-.+..... ...+|+||-+ ..-... +-...+-..
T Consensus 243 ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~AfVDRADi~~ 322 (423)
T KOG0744|consen 243 ELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDVAFVDRADIVF 322 (423)
T ss_pred HHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHHHHhhhHhhhee
Confidence 5555543 456679885332 12333333322222 2244445443 221111 111134567
Q ss_pred EcCCCCHHHHHHHHHhh
Q 037291 303 RVNGLEFEEAFEHFCNF 319 (349)
Q Consensus 303 ~l~~L~~~ea~~Lf~~~ 319 (349)
.+++.+.+.-.+++..+
T Consensus 323 yVG~Pt~~ai~~Ilksc 339 (423)
T KOG0744|consen 323 YVGPPTAEAIYEILKSC 339 (423)
T ss_pred ecCCccHHHHHHHHHHH
Confidence 78888887777777644
No 179
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.64 E-value=0.0041 Score=56.73 Aligned_cols=88 Identities=14% Similarity=0.205 Sum_probs=60.8
Q ss_pred CCeEEEEEeCCCCh--hHHHHHhcccCCCCCCcEEEEEeCCh-hHHHhcCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCC
Q 037291 249 RMKVLIVLDDVNEV--GQLEGLIGELDQFGPGSRIVVTTRDK-GVLEKFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENH 325 (349)
Q Consensus 249 ~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTtR~~-~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 325 (349)
+++=++|+|+++.. ...+.++..+.-..+++.+|++|.+. .++..... ....+.+.+++.+++.+.+.....
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~S-RCq~~~~~~~~~~~~~~~L~~~~~---- 181 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVS-RCQQWVVTPPSTAQAMQWLKGQGI---- 181 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHh-cceeEeCCCCCHHHHHHHHHHcCC----
Confidence 34568889999754 45677777777666777777776654 44444321 567899999999999998865421
Q ss_pred CCchHHHHHHHHHHHhcCCccc
Q 037291 326 CPTNLNWHSRRVVEYAKGNPLV 347 (349)
Q Consensus 326 ~~~~~~~~~~~i~~~~~G~PLa 347 (349)
. ....++..++|.|+.
T Consensus 182 -~-----~~~~~l~l~~G~p~~ 197 (319)
T PRK06090 182 -T-----VPAYALKLNMGSPLK 197 (319)
T ss_pred -c-----hHHHHHHHcCCCHHH
Confidence 1 134678889999874
No 180
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.62 E-value=0.00061 Score=68.42 Aligned_cols=131 Identities=21% Similarity=0.248 Sum_probs=72.6
Q ss_pred eEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHHHhCC
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERVWR 249 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~ 249 (349)
+-+.|+|++|+|||++|+.++......|- .+. . ..+... .... ....+...+......
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~f~---~is------~-----~~~~~~----~~g~----~~~~~~~~f~~a~~~ 243 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVPFF---TIS------G-----SDFVEM----FVGV----GASRVRDMFEQAKKA 243 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCEE---EEe------h-----HHhHHh----hhcc----cHHHHHHHHHHHHhc
Confidence 44889999999999999999887643321 111 0 001100 0000 000111222233344
Q ss_pred CeEEEEEeCCCChh----------------HHHHHhcccCCCC--CCcEEEEEeCChhHHHhc--C-CCCCcEEEcCCCC
Q 037291 250 MKVLIVLDDVNEVG----------------QLEGLIGELDQFG--PGSRIVVTTRDKGVLEKF--R-GEEKKIHRVNGLE 308 (349)
Q Consensus 250 k~~LlVlDdv~~~~----------------~~~~l~~~~~~~~--~gs~IIiTtR~~~~~~~~--~-~~~~~~~~l~~L~ 308 (349)
.+.+|+||+++... .+..++..+..+. .+..+|.||...+.+... . ..-+..+.++..+
T Consensus 244 ~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd 323 (644)
T PRK10733 244 APCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPD 323 (644)
T ss_pred CCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCC
Confidence 67899999996431 2334443333332 244555677766543321 1 1235778899999
Q ss_pred HHHHHHHHHhhhcC
Q 037291 309 FEEAFEHFCNFAFK 322 (349)
Q Consensus 309 ~~ea~~Lf~~~a~~ 322 (349)
.++-.+++..+.-.
T Consensus 324 ~~~R~~Il~~~~~~ 337 (644)
T PRK10733 324 VRGREQILKVHMRR 337 (644)
T ss_pred HHHHHHHHHHHhhc
Confidence 88888888877643
No 181
>PRK08118 topology modulation protein; Reviewed
Probab=97.60 E-value=0.0002 Score=59.24 Aligned_cols=32 Identities=28% Similarity=0.445 Sum_probs=25.3
Q ss_pred EEEEeccCccchHHHHHHHHHhhhc---CCcceEE
Q 037291 171 IVGIWGMGGIGKTTLAEAIFDQFTG---EFDGSCF 202 (349)
Q Consensus 171 ~i~I~G~~GiGKTtLa~~~~~~~~~---~f~~~~~ 202 (349)
.|.|+|++|+||||||+.+++.+.- +++...|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 5789999999999999999997643 2454554
No 182
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.60 E-value=5.1e-05 Score=58.97 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=21.5
Q ss_pred EEEEeccCccchHHHHHHHHHhh
Q 037291 171 IVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 171 ~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
+|+|.|++|+||||+|+.+++++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999976
No 183
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.59 E-value=0.0011 Score=56.80 Aligned_cols=117 Identities=20% Similarity=0.245 Sum_probs=69.0
Q ss_pred CCCCcccccchhhhHHHhhhh-cCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHH
Q 037291 143 SSNGLVGLNSRIEQIKPFLCM-DLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQK 221 (349)
Q Consensus 143 ~~~~~vGr~~~~~~l~~~L~~-~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 221 (349)
....++|.+...+.+.+-... -..-...-|.+||.-|.|||+|++++.+.+....-.-+=+. ..++..+
T Consensus 58 ~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~--------k~dl~~L-- 127 (287)
T COG2607 58 DLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVD--------KEDLATL-- 127 (287)
T ss_pred CHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEc--------HHHHhhH--
Confidence 345689988887766543221 11224567889999999999999999998877665522222 1122221
Q ss_pred HHHHHhhcccccccCCCchHHHHHHh--CCCeEEEEEeCCC---ChhHHHHHhcccCC---CCCCcEEEEEeCCh
Q 037291 222 EMLSTILSEKLEVAGANIPHFTKERV--WRMKVLIVLDDVN---EVGQLEGLIGELDQ---FGPGSRIVVTTRDK 288 (349)
Q Consensus 222 ~ll~~~~~~~~~~~~~~~~~~~~~~l--~~k~~LlVlDdv~---~~~~~~~l~~~~~~---~~~gs~IIiTtR~~ 288 (349)
-.+.+.| ...|++|..||+. +.+.++.+...+.. ..|...++..|.++
T Consensus 128 -------------------p~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 128 -------------------PDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred -------------------HHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 1222222 3569999999993 33455665555442 12344455444443
No 184
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.59 E-value=0.0006 Score=66.86 Aligned_cols=47 Identities=32% Similarity=0.521 Sum_probs=37.5
Q ss_pred CCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHh
Q 037291 143 SSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 143 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
...+++|.+..++.+...+... ....+.|+|++|+|||++|+.+++.
T Consensus 63 ~f~~iiGqs~~i~~l~~al~~~---~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 63 SFDEIIGQEEGIKALKAALCGP---NPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred CHHHeeCcHHHHHHHHHHHhCC---CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999988776433 3455679999999999999999864
No 185
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.59 E-value=0.0003 Score=64.86 Aligned_cols=100 Identities=12% Similarity=0.122 Sum_probs=59.7
Q ss_pred hHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCC-cceEEEEeccccccCCCChHHHHHHHHHHhhcccccc
Q 037291 156 QIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEF-DGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEV 234 (349)
Q Consensus 156 ~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~ 234 (349)
++.+++..- ...+.++|+|.+|+|||||++.+++.+..+. +..+++..+.+ ......+++..+...+.......
T Consensus 122 RvID~l~Pi--GkGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgE---R~~EV~df~~~i~~~Vvast~de 196 (380)
T PRK12608 122 RVVDLVAPI--GKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDE---RPEEVTDMRRSVKGEVYASTFDR 196 (380)
T ss_pred hhhhheeec--CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecC---CCCCHHHHHHHHhhhEEeecCCC
Confidence 355555432 2345668999999999999999999876554 34334433333 25567777777766544332111
Q ss_pred cC-C--Cc---hHHHHHHh--CCCeEEEEEeCCC
Q 037291 235 AG-A--NI---PHFTKERV--WRMKVLIVLDDVN 260 (349)
Q Consensus 235 ~~-~--~~---~~~~~~~l--~~k~~LlVlDdv~ 260 (349)
.. . .. ...+.+++ .+++++||+|++.
T Consensus 197 ~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 197 PPDEHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 11 1 11 11122222 5789999999994
No 186
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.57 E-value=0.00076 Score=57.28 Aligned_cols=127 Identities=20% Similarity=0.255 Sum_probs=57.3
Q ss_pred cchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhh--hcCCcceEEEEeccccccC-CCChHHHHHH-----
Q 037291 151 NSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQF--TGEFDGSCFMSDVRRNSET-GGGLEHLQKE----- 222 (349)
Q Consensus 151 ~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~--~~~f~~~~~~~~~~~~~~~-~~~~~~l~~~----- 222 (349)
..+-....+.|.. ..++.+.|++|.|||.||.+.+-+. ...|+..++....-+.... .+-+-++-..
T Consensus 6 ~~~Q~~~~~al~~-----~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~ 80 (205)
T PF02562_consen 6 NEEQKFALDALLN-----NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYL 80 (205)
T ss_dssp SHHHHHHHHHHHH------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTT
T ss_pred CHHHHHHHHHHHh-----CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHH
Confidence 3344444444543 3688999999999999999888643 3567777776533221110 0000111111
Q ss_pred --HHHHhhcccccccCCCchHHHH---------HHhCCC---eEEEEEeCCCCh--hHHHHHhcccCCCCCCcEEEEEeC
Q 037291 223 --MLSTILSEKLEVAGANIPHFTK---------ERVWRM---KVLIVLDDVNEV--GQLEGLIGELDQFGPGSRIVVTTR 286 (349)
Q Consensus 223 --ll~~~~~~~~~~~~~~~~~~~~---------~~l~~k---~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTtR 286 (349)
+...+..-- ....+...+. ..++++ ..++|+|++.|. .++..++. +.+.+|++|++--
T Consensus 81 ~p~~d~l~~~~---~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilT---R~g~~skii~~GD 154 (205)
T PF02562_consen 81 RPIYDALEELF---GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILT---RIGEGSKIIITGD 154 (205)
T ss_dssp HHHHHHHTTTS----TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHT---TB-TT-EEEEEE-
T ss_pred HHHHHHHHHHh---ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHc---ccCCCcEEEEecC
Confidence 111110000 1122212221 123443 579999999654 46666644 4578999999876
Q ss_pred Ch
Q 037291 287 DK 288 (349)
Q Consensus 287 ~~ 288 (349)
..
T Consensus 155 ~~ 156 (205)
T PF02562_consen 155 PS 156 (205)
T ss_dssp --
T ss_pred ce
Confidence 44
No 187
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.56 E-value=0.00018 Score=58.67 Aligned_cols=33 Identities=24% Similarity=0.309 Sum_probs=26.8
Q ss_pred EEEeccCccchHHHHHHHHHhhhcCCcceEEEE
Q 037291 172 VGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMS 204 (349)
Q Consensus 172 i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 204 (349)
+.|+|++|+||||++..++......-..++|+.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 679999999999999999988765445566665
No 188
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.56 E-value=0.0003 Score=62.34 Aligned_cols=91 Identities=20% Similarity=0.244 Sum_probs=58.0
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHHHhhccccc-c--c-CC------
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLE-V--A-GA------ 237 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~-~--~-~~------ 237 (349)
..+.++|.|.+|+|||||+..+++.++.+|...+++..+++- ......+...+...-...... . . ++
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer---~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 144 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGER---TREGNDLYHEMKESGVLSKTALVYGQMNEPPGARA 144 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccC---cHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 457789999999999999999999998888777888766553 334455555554321111000 0 0 01
Q ss_pred ---CchHHHHHHh--C-CCeEEEEEeCCCC
Q 037291 238 ---NIPHFTKERV--W-RMKVLIVLDDVNE 261 (349)
Q Consensus 238 ---~~~~~~~~~l--~-~k~~LlVlDdv~~ 261 (349)
...-.+.+++ + ++.+|+++||+..
T Consensus 145 ~~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr 174 (274)
T cd01133 145 RVALTGLTMAEYFRDEEGQDVLLFIDNIFR 174 (274)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEeChhH
Confidence 1112234444 3 8899999999953
No 189
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.55 E-value=0.0018 Score=56.65 Aligned_cols=185 Identities=16% Similarity=0.226 Sum_probs=106.5
Q ss_pred CCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhc------CCcceEEEEeccc------cc
Q 037291 143 SSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTG------EFDGSCFMSDVRR------NS 210 (349)
Q Consensus 143 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~------~f~~~~~~~~~~~------~~ 210 (349)
..+.+.++++.-..+..+... .+.+...++|++|.||-|.+..+.+++-. +-+...|...... ++
T Consensus 11 sl~~l~~~~e~~~~Lksl~~~---~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvs 87 (351)
T KOG2035|consen 11 SLDELIYHEELANLLKSLSST---GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVS 87 (351)
T ss_pred hhhhcccHHHHHHHHHHhccc---CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEec
Confidence 334567777777777666552 35788889999999999999888876432 1223333331111 00
Q ss_pred c----------CCCChHHHHHHHHHHhhcccccccCCCchHHHHHHhCCCe-EEEEEeCCCCh--hHHHHHhcccCCCCC
Q 037291 211 E----------TGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMK-VLIVLDDVNEV--GQLEGLIGELDQFGP 277 (349)
Q Consensus 211 ~----------~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~-~LlVlDdv~~~--~~~~~l~~~~~~~~~ 277 (349)
. ....-.-+.++++.++.....-... ..+. -++|+-.++.. +.-.++........+
T Consensus 88 S~yHlEitPSDaG~~DRvViQellKevAQt~qie~~-----------~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~ 156 (351)
T KOG2035|consen 88 SNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQ-----------GQRPFKVVVINEADELTRDAQHALRRTMEKYSS 156 (351)
T ss_pred ccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhc-----------cccceEEEEEechHhhhHHHHHHHHHHHHHHhc
Confidence 0 0111122334444443322111100 1122 25667766643 233445555555567
Q ss_pred CcEEEEEeCCh-hHHHhcCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCC
Q 037291 278 GSRIVVTTRDK-GVLEKFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGN 344 (349)
Q Consensus 278 gs~IIiTtR~~-~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~ 344 (349)
.+|+|+...+. .+.+.... ....+.++..+++|....++...-+++...+ .+++.+|+++++|+
T Consensus 157 ~~RlIl~cns~SriIepIrS-RCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~n 221 (351)
T KOG2035|consen 157 NCRLILVCNSTSRIIEPIRS-RCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRN 221 (351)
T ss_pred CceEEEEecCcccchhHHhh-heeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhccc
Confidence 78888765432 22222211 3467899999999999999988755553333 57899999999987
No 190
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.55 E-value=0.0014 Score=58.79 Aligned_cols=173 Identities=18% Similarity=0.197 Sum_probs=98.5
Q ss_pred CCcccccchhhhHHHhhhhc-CCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccC-CCChHHHHHH
Q 037291 145 NGLVGLNSRIEQIKPFLCMD-LSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSET-GGGLEHLQKE 222 (349)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~-~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~-~~~~~~l~~~ 222 (349)
..++|-.++-+++..++... -.++...+.|.|+.|.|||+|......+ .+.|.-...+.......+. .-.+..+..+
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~rq 102 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGITRQ 102 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHHHH
Confidence 45899999999999888653 1234566779999999999998877766 3344444444433222221 1133344444
Q ss_pred HHHHhhcccccccC-CCchHHHHHHhCC------CeEEEEEeCCCChh----H--HHHHhcccC-CCCCCcEEEEEeCCh
Q 037291 223 MLSTILSEKLEVAG-ANIPHFTKERVWR------MKVLIVLDDVNEVG----Q--LEGLIGELD-QFGPGSRIVVTTRDK 288 (349)
Q Consensus 223 ll~~~~~~~~~~~~-~~~~~~~~~~l~~------k~~LlVlDdv~~~~----~--~~~l~~~~~-~~~~gs~IIiTtR~~ 288 (349)
+..++........+ ......+-..|.. .++++|+|++|-.. | +-.++.... .-.|-+.|-+|||-.
T Consensus 103 l~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld 182 (408)
T KOG2228|consen 103 LALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLD 182 (408)
T ss_pred HHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecccc
Confidence 43333322222211 3333455555532 37899999886321 1 222222222 123556677899865
Q ss_pred hH-------HHhcCCCCCcEEEcCCCCHHHHHHHHHhhh
Q 037291 289 GV-------LEKFRGEEKKIHRVNGLEFEEAFEHFCNFA 320 (349)
Q Consensus 289 ~~-------~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 320 (349)
-. -.... ...++-++.++-++-.++++...
T Consensus 183 ~lE~LEKRVKSRFs--hr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 183 ILELLEKRVKSRFS--HRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHHHHHHHHHhhcc--cceeeccCCCChHHHHHHHHHHh
Confidence 32 22222 33467788888899998888765
No 191
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.53 E-value=0.00037 Score=61.67 Aligned_cols=37 Identities=27% Similarity=0.259 Sum_probs=29.2
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEE
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMS 204 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 204 (349)
...-+.++|.+|+|||.||.++.+.+...--.+.|+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~ 140 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFIT 140 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEE
Confidence 4567889999999999999999999884334455554
No 192
>PRK06696 uridine kinase; Validated
Probab=97.52 E-value=0.00016 Score=62.73 Aligned_cols=46 Identities=20% Similarity=0.198 Sum_probs=35.0
Q ss_pred ccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhc
Q 037291 150 LNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTG 195 (349)
Q Consensus 150 r~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~ 195 (349)
|...+++|.+.+.........+|+|.|.+|+||||||+.+++.+..
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4455566666555432456889999999999999999999998754
No 193
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.00063 Score=66.40 Aligned_cols=132 Identities=23% Similarity=0.246 Sum_probs=77.8
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHHHh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERV 247 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l 247 (349)
....+.++|++|.|||.||+++++.....|-....- .+++...++. ...+...+....
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~------------------~l~sk~vGes----ek~ir~~F~~A~ 332 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS------------------ELLSKWVGES----EKNIRELFEKAR 332 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH------------------HHhccccchH----HHHHHHHHHHHH
Confidence 456888999999999999999999654443321111 1111111111 111223333344
Q ss_pred CCCeEEEEEeCCCCh-------------hHHHHHhcccCCCCC--CcEEEEEeCChhHHHhc-C--CCCCcEEEcCCCCH
Q 037291 248 WRMKVLIVLDDVNEV-------------GQLEGLIGELDQFGP--GSRIVVTTRDKGVLEKF-R--GEEKKIHRVNGLEF 309 (349)
Q Consensus 248 ~~k~~LlVlDdv~~~-------------~~~~~l~~~~~~~~~--gs~IIiTtR~~~~~~~~-~--~~~~~~~~l~~L~~ 309 (349)
...+.+|++|+++.. .....++..+..... +..+|-||.....+... . +.-+..+.+++-+.
T Consensus 333 ~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~ 412 (494)
T COG0464 333 KLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDL 412 (494)
T ss_pred cCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCH
Confidence 567899999999522 223444444433333 33456666555443321 1 12467899999999
Q ss_pred HHHHHHHHhhhc
Q 037291 310 EEAFEHFCNFAF 321 (349)
Q Consensus 310 ~ea~~Lf~~~a~ 321 (349)
++..+.|..+.-
T Consensus 413 ~~r~~i~~~~~~ 424 (494)
T COG0464 413 EERLEIFKIHLR 424 (494)
T ss_pred HHHHHHHHHHhc
Confidence 999999998874
No 194
>PRK07261 topology modulation protein; Provisional
Probab=97.48 E-value=0.00057 Score=56.74 Aligned_cols=23 Identities=35% Similarity=0.619 Sum_probs=20.6
Q ss_pred EEEEeccCccchHHHHHHHHHhh
Q 037291 171 IVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 171 ~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
.|.|+|++|+||||||+.+....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 195
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.48 E-value=0.0003 Score=65.23 Aligned_cols=109 Identities=13% Similarity=0.171 Sum_probs=63.4
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEE-eccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHHHh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMS-DVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERV 247 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~-~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l 247 (349)
...+.|+|+.|.||||+.+.+...+.......++.. +..+. ........+...............++..+
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~---------~~~~~~~~i~q~evg~~~~~~~~~l~~~l 192 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEY---------VHRNKRSLINQREVGLDTLSFANALRAAL 192 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhh---------hccCccceEEccccCCCCcCHHHHHHHhh
Confidence 478999999999999999999887755444444432 11111 00000000000011111134456778888
Q ss_pred CCCeEEEEEeCCCChhHHHHHhcccCCCCCCcEEEEEeCChh
Q 037291 248 WRMKVLIVLDDVNEVGQLEGLIGELDQFGPGSRIVVTTRDKG 289 (349)
Q Consensus 248 ~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IIiTtR~~~ 289 (349)
+..+=+|++|++.+.+.....+... ..|..++.|.....
T Consensus 193 r~~pd~i~vgEird~~~~~~~l~aa---~tGh~v~~T~Ha~~ 231 (343)
T TIGR01420 193 REDPDVILIGEMRDLETVELALTAA---ETGHLVFGTLHTNS 231 (343)
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHH---HcCCcEEEEEcCCC
Confidence 8899999999998877665543332 34555666655543
No 196
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.0014 Score=65.30 Aligned_cols=179 Identities=18% Similarity=0.187 Sum_probs=101.3
Q ss_pred CCCcccccchhhhHHH---hhhhc------CCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCC
Q 037291 144 SNGLVGLNSRIEQIKP---FLCMD------LSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGG 214 (349)
Q Consensus 144 ~~~~vGr~~~~~~l~~---~L~~~------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 214 (349)
..++.|-++..++|.+ +|..+ .-.-++=+.|+|++|+|||-||++++-.-. +=|+. ++. .
T Consensus 310 FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-----VPF~s----vSG--S 378 (774)
T KOG0731|consen 310 FKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-----VPFFS----VSG--S 378 (774)
T ss_pred cccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-----Cceee----ech--H
Confidence 4567787765555544 44432 012367788999999999999999987642 22332 221 0
Q ss_pred ChHHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCCh-----------------hHHHHHhcccCCCCC
Q 037291 215 GLEHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEV-----------------GQLEGLIGELDQFGP 277 (349)
Q Consensus 215 ~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~-----------------~~~~~l~~~~~~~~~ 277 (349)
+++..+.+.. ...+.+.....-...+.++.+|+++.. ..+++++..+..+..
T Consensus 379 -------EFvE~~~g~~----asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~ 447 (774)
T KOG0731|consen 379 -------EFVEMFVGVG----ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFET 447 (774)
T ss_pred -------HHHHHhcccc----hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcC
Confidence 1111111110 011112222233455788998887522 136777777776655
Q ss_pred Cc--EEEEEeCChhHHHhc--C-CCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCcc
Q 037291 278 GS--RIVVTTRDKGVLEKF--R-GEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNPL 346 (349)
Q Consensus 278 gs--~IIiTtR~~~~~~~~--~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL 346 (349)
++ .+|-+|+..+++... . +.-+..+.++.-+.....++|.-|+-..... .+..++++ ++..+-|++=
T Consensus 448 ~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t~gf~g 519 (774)
T KOG0731|consen 448 SKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSK-LASLTPGFSG 519 (774)
T ss_pred CCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC-cchhhHHH-HHhcCCCCcH
Confidence 44 333445544443321 1 1245778888888889999998887433322 34445566 7777777763
No 197
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.47 E-value=0.00024 Score=60.42 Aligned_cols=50 Identities=20% Similarity=0.212 Sum_probs=40.7
Q ss_pred CCCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhh
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
.....+||-++-++.+.-+-.+ +..+.+.|.||+|+||||-+..+++.+-
T Consensus 24 ~~l~dIVGNe~tv~rl~via~~---gnmP~liisGpPG~GKTTsi~~LAr~LL 73 (333)
T KOG0991|consen 24 SVLQDIVGNEDTVERLSVIAKE---GNMPNLIISGPPGTGKTTSILCLARELL 73 (333)
T ss_pred hHHHHhhCCHHHHHHHHHHHHc---CCCCceEeeCCCCCchhhHHHHHHHHHh
Confidence 4456789999988888765554 4788888999999999999999998753
No 198
>PRK04296 thymidine kinase; Provisional
Probab=97.46 E-value=0.00023 Score=60.14 Aligned_cols=109 Identities=17% Similarity=0.094 Sum_probs=59.1
Q ss_pred eEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHHHhhccccc--ccC-CCchHHHHHH
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLE--VAG-ANIPHFTKER 246 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~--~~~-~~~~~~~~~~ 246 (349)
.++.|+|+.|.||||+|..++.+.......++++. . .... ..+.. .+++++...... ... ..+...+.+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k-~-~~d~-~~~~~----~i~~~lg~~~~~~~~~~~~~~~~~~~~- 74 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFK-P-AIDD-RYGEG----KVVSRIGLSREAIPVSSDTDIFELIEE- 74 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEe-c-cccc-cccCC----cEecCCCCcccceEeCChHHHHHHHHh-
Confidence 56789999999999999999998765544344332 1 0011 11111 122222211110 011 222233333
Q ss_pred hCCCeEEEEEeCCCC--hhHHHHHhcccCCCCCCcEEEEEeCCh
Q 037291 247 VWRMKVLIVLDDVNE--VGQLEGLIGELDQFGPGSRIVVTTRDK 288 (349)
Q Consensus 247 l~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IIiTtR~~ 288 (349)
..++.-+||+|.+.- .+++..+...+. ..|..||+|.++.
T Consensus 75 ~~~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~ 116 (190)
T PRK04296 75 EGEKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDT 116 (190)
T ss_pred hCCCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCc
Confidence 233556899999953 344554544432 4578899999983
No 199
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.44 E-value=0.00022 Score=59.02 Aligned_cols=150 Identities=15% Similarity=0.148 Sum_probs=74.3
Q ss_pred EEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHHHhhcccccc---c-CCCchHHHHHH
Q 037291 171 IVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEV---A-GANIPHFTKER 246 (349)
Q Consensus 171 ~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~---~-~~~~~~~~~~~ 246 (349)
++.|.|.+|+||||+|..++..... ...|+. +. ...-.+..+.+........... + ...+...+...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~---~~~~ia-----t~-~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~ 73 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL---QVLYIA-----TA-QPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD 73 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC---CcEeCc-----CC-CCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhh
Confidence 5789999999999999999876432 233443 11 1222334444443333221111 1 13444445443
Q ss_pred hCCCeEEEEEeCCCCh----------hH----HHHHhcccCCCCCCcEEEEEeCChhHHHhcCCCCCcEEEcCCCCHHHH
Q 037291 247 VWRMKVLIVLDDVNEV----------GQ----LEGLIGELDQFGPGSRIVVTTRDKGVLEKFRGEEKKIHRVNGLEFEEA 312 (349)
Q Consensus 247 l~~k~~LlVlDdv~~~----------~~----~~~l~~~~~~~~~gs~IIiTtR~~~~~~~~~~~~~~~~~l~~L~~~ea 312 (349)
..+ .-++++|.+... .. +..+...+. ..+..+|+|+.... .+..+.+..
T Consensus 74 ~~~-~~~VlID~Lt~~~~n~l~~~~~~~~~~~l~~li~~L~--~~~~tvVlVs~Evg--------------~g~vp~~~~ 136 (170)
T PRK05800 74 AAP-GRCVLVDCLTTWVTNLLFEEGEEAIAAEIDALLAALQ--QLPAKIILVTNEVG--------------MGIVPEYRL 136 (170)
T ss_pred cCC-CCEEEehhHHHHHHHHhcccchHHHHHHHHHHHHHHH--cCCCCEEEEEcCCc--------------ccccCCCHH
Confidence 332 337888987211 11 122333332 24555677665221 122333344
Q ss_pred HHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCccccC
Q 037291 313 FEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNPLVLK 349 (349)
Q Consensus 313 ~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLalk 349 (349)
-+.|....+.- ...+...++++.....|+|+-||
T Consensus 137 ~r~~~d~lG~l---nq~la~~ad~V~~v~~Gi~~~lK 170 (170)
T PRK05800 137 GRHFRDIAGRL---NQQLAAAADEVYLVVAGLPLKLK 170 (170)
T ss_pred HHHHHHHHHHH---HHHHHHHCCEEEEEeCCCcEecC
Confidence 55565544211 11222334555556679998876
No 200
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.0021 Score=59.97 Aligned_cols=123 Identities=21% Similarity=0.247 Sum_probs=69.1
Q ss_pred eEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHHHhCC
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERVWR 249 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~ 249 (349)
|--.++||||.|||+++.++++.+ .|+ ++.-.+.++.. +.. ++.++.. ..
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L--~yd--IydLeLt~v~~-n~d----Lr~LL~~---------------------t~ 285 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYL--NYD--IYDLELTEVKL-DSD----LRHLLLA---------------------TP 285 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhc--CCc--eEEeeeccccC-cHH----HHHHHHh---------------------CC
Confidence 556799999999999999999865 233 33332322222 111 2222221 22
Q ss_pred CeEEEEEeCCCChh--------------------HHHHHhcccC--CCCCC-cE-EEEEeCChhHHHhc---CCCCCcEE
Q 037291 250 MKVLIVLDDVNEVG--------------------QLEGLIGELD--QFGPG-SR-IVVTTRDKGVLEKF---RGEEKKIH 302 (349)
Q Consensus 250 k~~LlVlDdv~~~~--------------------~~~~l~~~~~--~~~~g-s~-IIiTtR~~~~~~~~---~~~~~~~~ 302 (349)
.+-+||+.|++-.- .+.-|+..+. |...| -| ||+||....-+... .+..+-.+
T Consensus 286 ~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI 365 (457)
T KOG0743|consen 286 NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHI 365 (457)
T ss_pred CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEE
Confidence 35677777775220 1222333333 22222 24 55677665433221 12345778
Q ss_pred EcCCCCHHHHHHHHHhhhcC
Q 037291 303 RVNGLEFEEAFEHFCNFAFK 322 (349)
Q Consensus 303 ~l~~L~~~ea~~Lf~~~a~~ 322 (349)
.+.-=+.+....||.++...
T Consensus 366 ~mgyCtf~~fK~La~nYL~~ 385 (457)
T KOG0743|consen 366 YMGYCTFEAFKTLASNYLGI 385 (457)
T ss_pred EcCCCCHHHHHHHHHHhcCC
Confidence 88888999999999888744
No 201
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=97.43 E-value=0.0024 Score=62.47 Aligned_cols=50 Identities=24% Similarity=0.301 Sum_probs=41.3
Q ss_pred CCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhh
Q 037291 143 SSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 143 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
....++|....++++.+.+..- ......|.|+|..|+|||++|+.+.+.-
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~-a~~~~pVlI~Ge~GtGK~~~A~~ih~~s 234 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVV-AASDLNVLILGETGVGKELVARAIHAAS 234 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHH-hCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 3567999999999998888775 4445667799999999999999998753
No 202
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.43 E-value=0.00016 Score=58.00 Aligned_cols=32 Identities=28% Similarity=0.365 Sum_probs=26.8
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhhcC-Ccce
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFTGE-FDGS 200 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~-f~~~ 200 (349)
.--|+|+||+|+||||+++.+++.++.. |...
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvg 37 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVG 37 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceee
Confidence 3568899999999999999999988766 6544
No 203
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=97.43 E-value=0.0029 Score=64.36 Aligned_cols=49 Identities=22% Similarity=0.245 Sum_probs=38.7
Q ss_pred CCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhh
Q 037291 144 SNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
...++|....++.+.+.+..- ......|.|+|.+|+|||++|+.+.+.-
T Consensus 375 ~~~liG~S~~~~~~~~~~~~~-a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 375 FGEIIGRSEAMYSVLKQVEMV-AQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred ccceeecCHHHHHHHHHHHHH-hCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 346999999999887777654 2334567799999999999999997753
No 204
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.00071 Score=66.24 Aligned_cols=54 Identities=26% Similarity=0.362 Sum_probs=43.4
Q ss_pred CCcccccchhhhHHHhhhhc---CCCCeeEEEEeccCccchHHHHHHHHHhhhcCCc
Q 037291 145 NGLVGLNSRIEQIKPFLCMD---LSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFD 198 (349)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~---~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~ 198 (349)
..-+|+++-.+++.+++.-. .+-+..+++++|++|+|||++|+.++.-+...|-
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFf 467 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFF 467 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceE
Confidence 34588888888898888643 2345789999999999999999999997765543
No 205
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.41 E-value=0.0024 Score=59.37 Aligned_cols=37 Identities=32% Similarity=0.460 Sum_probs=27.9
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEE
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMS 204 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 204 (349)
..++|+|+|++|+||||++..++..+...-..+.++.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~ 276 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFIT 276 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEe
Confidence 4579999999999999999999987654422344443
No 206
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.41 E-value=0.00028 Score=56.33 Aligned_cols=45 Identities=27% Similarity=0.265 Sum_probs=32.5
Q ss_pred ccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhh
Q 037291 148 VGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 148 vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
||....++++.+.+..- ......|.|+|..|+||+++|+.+...-
T Consensus 1 vG~S~~~~~l~~~l~~~-a~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERL-AKSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp --SCHHHHHHHHHHHHH-HCSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCCCHHHHHHHHHHHHH-hCCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 56777777777777654 3344566799999999999999887753
No 207
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=97.41 E-value=0.0026 Score=62.76 Aligned_cols=51 Identities=22% Similarity=0.290 Sum_probs=40.8
Q ss_pred CCCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhh
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
.....++|....++++.+.+..- ......|.|+|.+|+|||++|+.+.+.-
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~-a~~~~pvli~Ge~GtGK~~lA~~ih~~s 243 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVV-ARSNSTVLLRGESGTGKELIAKAIHYLS 243 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHH-hCcCCCEEEECCCCccHHHHHHHHHHhC
Confidence 34568999999999998888765 3334556799999999999999998753
No 208
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.41 E-value=0.0014 Score=63.68 Aligned_cols=58 Identities=21% Similarity=0.363 Sum_probs=42.4
Q ss_pred CCcccccchhhhHHHhhhhcC--CCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEE
Q 037291 145 NGLVGLNSRIEQIKPFLCMDL--SDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMS 204 (349)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~~--~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 204 (349)
.+++--..-++++..||.... ....+++.|+||+|+||||.++.+++.+ .|+..-|..
T Consensus 19 ~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el--g~~v~Ew~n 78 (519)
T PF03215_consen 19 DELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL--GFEVQEWIN 78 (519)
T ss_pred HHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh--CCeeEEecC
Confidence 445545567888888887531 2235789999999999999999999976 355555643
No 209
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.40 E-value=0.0002 Score=65.67 Aligned_cols=50 Identities=22% Similarity=0.347 Sum_probs=41.8
Q ss_pred CcccccchhhhHHHhhhhcC---CCCeeEEEEeccCccchHHHHHHHHHhhhc
Q 037291 146 GLVGLNSRIEQIKPFLCMDL---SDTVQIVGIWGMGGIGKTTLAEAIFDQFTG 195 (349)
Q Consensus 146 ~~vGr~~~~~~l~~~L~~~~---~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~ 195 (349)
.++|.++.++++.+++.... ....++++|+|++|+||||||+.+++.+..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 79999999999999887641 234688899999999999999999987643
No 210
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.39 E-value=0.00067 Score=58.94 Aligned_cols=48 Identities=17% Similarity=0.196 Sum_probs=36.1
Q ss_pred hHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEE
Q 037291 156 QIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMS 204 (349)
Q Consensus 156 ~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 204 (349)
.|.++|... -....++.|+|++|+|||++|.+++......-..++|+.
T Consensus 11 ~lD~~l~GG-i~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 11 MLDELLGGG-FERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred HHHHHhcCC-CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 344555432 234679999999999999999999987765556678876
No 211
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.39 E-value=0.0005 Score=58.35 Aligned_cols=58 Identities=16% Similarity=0.142 Sum_probs=36.5
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHHHhhcc
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSE 230 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~ 230 (349)
++++.++|+.|+||||.+..++.+...+-..+.+++ ...-..+..+-++..++.+...
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis----~D~~R~ga~eQL~~~a~~l~vp 58 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALIS----ADTYRIGAVEQLKTYAEILGVP 58 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE----ESTSSTHHHHHHHHHHHHHTEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeec----CCCCCccHHHHHHHHHHHhccc
Confidence 368999999999999999988887765544455554 2211233444455555555543
No 212
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.00088 Score=64.53 Aligned_cols=131 Identities=22% Similarity=0.292 Sum_probs=79.4
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHHHhC
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERVW 248 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~ 248 (349)
..-|.+||++|+|||-||+++++.-.-+|- . + .+ .+++....++.. ..+...+++.-.
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NFi-----s----V----KG-----PELlNkYVGESE----rAVR~vFqRAR~ 602 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANFI-----S----V----KG-----PELLNKYVGESE----RAVRQVFQRARA 602 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCceE-----e----e----cC-----HHHHHHHhhhHH----HHHHHHHHHhhc
Confidence 566789999999999999999998766653 2 1 11 123333333221 112122233334
Q ss_pred CCeEEEEEeCCCCh-------------hHHHHHhcccCCC--CCCcEEEEEeCChhHHHh--cC-CCCCcEEEcCCCCHH
Q 037291 249 RMKVLIVLDDVNEV-------------GQLEGLIGELDQF--GPGSRIVVTTRDKGVLEK--FR-GEEKKIHRVNGLEFE 310 (349)
Q Consensus 249 ~k~~LlVlDdv~~~-------------~~~~~l~~~~~~~--~~gs~IIiTtR~~~~~~~--~~-~~~~~~~~l~~L~~~ 310 (349)
.-+++|+||.++.. .-+++|+-.+... ..|.-||-.|..+++... +. +.-+.+.-|+.-+.+
T Consensus 603 saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~ 682 (802)
T KOG0733|consen 603 SAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAE 682 (802)
T ss_pred CCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHH
Confidence 56999999999632 1345666555543 235556655554443221 11 124678888888999
Q ss_pred HHHHHHHhhhc
Q 037291 311 EAFEHFCNFAF 321 (349)
Q Consensus 311 ea~~Lf~~~a~ 321 (349)
|-..+++...-
T Consensus 683 eR~~ILK~~tk 693 (802)
T KOG0733|consen 683 ERVAILKTITK 693 (802)
T ss_pred HHHHHHHHHhc
Confidence 99999987763
No 213
>PRK14974 cell division protein FtsY; Provisional
Probab=97.38 E-value=0.0024 Score=58.66 Aligned_cols=29 Identities=21% Similarity=0.265 Sum_probs=25.0
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcC
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGE 196 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 196 (349)
...+++++|++|+||||++..++..+...
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999998876544
No 214
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.36 E-value=0.0017 Score=54.30 Aligned_cols=23 Identities=35% Similarity=0.497 Sum_probs=20.9
Q ss_pred EEEEeccCccchHHHHHHHHHhh
Q 037291 171 IVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 171 ~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
+|.|.|++|+||||+|+.+++++
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999999999876
No 215
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.36 E-value=0.0031 Score=51.35 Aligned_cols=117 Identities=19% Similarity=0.148 Sum_probs=60.1
Q ss_pred eEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHHHhhcc----------cccccC---
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSE----------KLEVAG--- 236 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~----------~~~~~~--- 236 (349)
..|-|++..|.||||+|...+-+...+=..+.++.-+.... ..+-..+++.+ ..+.-. ......
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~--~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGW--KYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCC--ccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 46778888899999999999887665544455544222211 12222222222 000000 000000
Q ss_pred -CCchHHHHHHhC-CCeEEEEEeCCCC-----hhHHHHHhcccCCCCCCcEEEEEeCChh
Q 037291 237 -ANIPHFTKERVW-RMKVLIVLDDVNE-----VGQLEGLIGELDQFGPGSRIVVTTRDKG 289 (349)
Q Consensus 237 -~~~~~~~~~~l~-~k~~LlVlDdv~~-----~~~~~~l~~~~~~~~~gs~IIiTtR~~~ 289 (349)
.......++.+. +.-=|||||++.. .-..+.+...+..-..+..+|+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 111123333343 3456999999832 2223344443333345678999999853
No 216
>PRK07667 uridine kinase; Provisional
Probab=97.35 E-value=0.00044 Score=58.59 Aligned_cols=41 Identities=20% Similarity=0.318 Sum_probs=31.7
Q ss_pred hhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhc
Q 037291 154 IEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTG 195 (349)
Q Consensus 154 ~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~ 195 (349)
++.+.+.+... .....+|+|.|.+|+||||+|+.+...+..
T Consensus 3 ~~~~~~~~~~~-~~~~~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 3 TNELINIMKKH-KENRFILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred HHHHHHHHHhc-CCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34455566554 445689999999999999999999987654
No 217
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.35 E-value=0.0013 Score=61.29 Aligned_cols=97 Identities=18% Similarity=0.167 Sum_probs=54.8
Q ss_pred hhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHHHhhccccc
Q 037291 154 IEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLE 233 (349)
Q Consensus 154 ~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~ 233 (349)
+..+.+.|... -....++.|.|.+|+|||||+.+++......-..++|+. . .....++.. -+.++......
T Consensus 68 i~eLD~vLgGG-i~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs----~---EEs~~qi~~-Ra~rlg~~~~~ 138 (372)
T cd01121 68 IEELDRVLGGG-LVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS----G---EESPEQIKL-RADRLGISTEN 138 (372)
T ss_pred CHHHHHhhcCC-ccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE----C---CcCHHHHHH-HHHHcCCCccc
Confidence 34455555432 233578999999999999999999987765545566775 1 112233222 12333221111
Q ss_pred --c-cCCCchHHHHHHh-CCCeEEEEEeCCC
Q 037291 234 --V-AGANIPHFTKERV-WRMKVLIVLDDVN 260 (349)
Q Consensus 234 --~-~~~~~~~~~~~~l-~~k~~LlVlDdv~ 260 (349)
. ....+ +.+.+.+ ..+.-++|+|.+.
T Consensus 139 l~l~~e~~l-e~I~~~i~~~~~~lVVIDSIq 168 (372)
T cd01121 139 LYLLAETNL-EDILASIEELKPDLVIIDSIQ 168 (372)
T ss_pred EEEEccCcH-HHHHHHHHhcCCcEEEEcchH
Confidence 1 11222 3343433 3467789999983
No 218
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=97.35 E-value=0.0025 Score=58.69 Aligned_cols=46 Identities=20% Similarity=0.187 Sum_probs=37.3
Q ss_pred CCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHH
Q 037291 145 NGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFD 191 (349)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~ 191 (349)
..++|....++++.+.+..- .....-|.|+|.+|+||+++|+.+..
T Consensus 6 ~~liG~S~~~~~~~~~i~~~-a~~~~pVlI~GE~GtGK~~lA~~iH~ 51 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRL-APLDKPVLIIGERGTGKELIASRLHY 51 (326)
T ss_pred CccEECCHHHHHHHHHHHHH-hCCCCCEEEECCCCCcHHHHHHHHHH
Confidence 45899999999998888765 33345567999999999999998875
No 219
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.34 E-value=0.0014 Score=54.93 Aligned_cols=33 Identities=21% Similarity=0.165 Sum_probs=26.4
Q ss_pred EEEeccCccchHHHHHHHHHhhhcCCcceEEEE
Q 037291 172 VGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMS 204 (349)
Q Consensus 172 i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 204 (349)
+.|.|++|+|||+|+.+++......=..++|+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 678999999999999999886654445567775
No 220
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.33 E-value=0.005 Score=56.01 Aligned_cols=47 Identities=21% Similarity=0.169 Sum_probs=33.9
Q ss_pred CcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCC
Q 037291 146 GLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEF 197 (349)
Q Consensus 146 ~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f 197 (349)
.++=.......+...|... +.|.|.|++|+||||+|+.++..+...|
T Consensus 46 ~y~f~~~~~~~vl~~l~~~-----~~ilL~G~pGtGKTtla~~lA~~l~~~~ 92 (327)
T TIGR01650 46 AYLFDKATTKAICAGFAYD-----RRVMVQGYHGTGKSTHIEQIAARLNWPC 92 (327)
T ss_pred CccCCHHHHHHHHHHHhcC-----CcEEEEeCCCChHHHHHHHHHHHHCCCe
Confidence 3443444455566666543 5688999999999999999999876443
No 221
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.32 E-value=0.00058 Score=56.44 Aligned_cols=30 Identities=17% Similarity=0.193 Sum_probs=23.6
Q ss_pred EEEeccCccchHHHHHHHHHhhhcCCcceEEEE
Q 037291 172 VGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMS 204 (349)
Q Consensus 172 i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 204 (349)
+.|.|.+|+|||++|.+++.. .....+|+.
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~---~~~~~~y~a 31 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE---LGGPVTYIA 31 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh---cCCCeEEEE
Confidence 578999999999999999875 223566665
No 222
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.32 E-value=0.00036 Score=56.51 Aligned_cols=36 Identities=25% Similarity=0.267 Sum_probs=29.9
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEE
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMS 204 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 204 (349)
..+|.|+|.+|.||||||+.+.+++...-..+.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 368999999999999999999999887766666664
No 223
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=97.31 E-value=0.012 Score=57.54 Aligned_cols=133 Identities=17% Similarity=0.236 Sum_probs=68.3
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcC---C-----cceEEEEecc-ccccCCCCh------------HHHHHHHHHH
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGE---F-----DGSCFMSDVR-RNSETGGGL------------EHLQKEMLST 226 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~---f-----~~~~~~~~~~-~~~~~~~~~------------~~l~~~ll~~ 226 (349)
....|+|+|+.|+|||||.+.+....... . -...|+.--+ .... ...+ ..-.+..+.+
T Consensus 347 ~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~-~~t~~d~l~~~~~~~~e~~~r~~L~~ 425 (530)
T COG0488 347 RGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDP-DKTVLEELSEGFPDGDEQEVRAYLGR 425 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCc-cCcHHHHHHhhCccccHHHHHHHHHH
Confidence 34678999999999999999996644322 0 0112221111 0000 1011 2233333333
Q ss_pred hhcccccc------cC--CCchHHHHHHhCCCeEEEEEeCCC---ChhHHHHHhcccCCCCCCcEEEEEeCChhHHHhcC
Q 037291 227 ILSEKLEV------AG--ANIPHFTKERVWRMKVLIVLDDVN---EVGQLEGLIGELDQFGPGSRIVVTTRDKGVLEKFR 295 (349)
Q Consensus 227 ~~~~~~~~------~~--~~~~~~~~~~l~~k~~LlVlDdv~---~~~~~~~l~~~~~~~~~gs~IIiTtR~~~~~~~~~ 295 (349)
++-..... -+ +...-.+...+-..+=|||||.=- |.+.++.+...+..+ +| .||+.|.|+..+...
T Consensus 426 f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f-~G-tvl~VSHDr~Fl~~v- 502 (530)
T COG0488 426 FGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF-EG-TVLLVSHDRYFLDRV- 502 (530)
T ss_pred cCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC-CC-eEEEEeCCHHHHHhh-
Confidence 33222111 01 222233344556678899999652 233344443333322 24 488889999887776
Q ss_pred CCCCcEEEcCC
Q 037291 296 GEEKKIHRVNG 306 (349)
Q Consensus 296 ~~~~~~~~l~~ 306 (349)
...++.+.+
T Consensus 503 --a~~i~~~~~ 511 (530)
T COG0488 503 --ATRIWLVED 511 (530)
T ss_pred --cceEEEEcC
Confidence 355666654
No 224
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.30 E-value=0.0095 Score=56.97 Aligned_cols=49 Identities=18% Similarity=0.280 Sum_probs=35.9
Q ss_pred chhhhHHHhhh-----hcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEE
Q 037291 152 SRIEQIKPFLC-----MDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFM 203 (349)
Q Consensus 152 ~~~~~l~~~L~-----~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 203 (349)
.-+.++..||. .. .-+.+++.|+|++|+||||.++.++..+ .+..+-|.
T Consensus 89 kKI~eVk~WL~~~~~~~~-~l~~~iLLltGPsGcGKSTtvkvLskel--g~~~~Ew~ 142 (634)
T KOG1970|consen 89 KKISEVKQWLKQVAEFTP-KLGSRILLLTGPSGCGKSTTVKVLSKEL--GYQLIEWS 142 (634)
T ss_pred HhHHHHHHHHHHHHHhcc-CCCceEEEEeCCCCCCchhHHHHHHHhh--Cceeeeec
Confidence 45677777877 23 3456899999999999999999998864 23444444
No 225
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.29 E-value=0.0019 Score=56.01 Aligned_cols=48 Identities=21% Similarity=0.163 Sum_probs=34.2
Q ss_pred hHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCC------cceEEEE
Q 037291 156 QIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEF------DGSCFMS 204 (349)
Q Consensus 156 ~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~ 204 (349)
.|..+|... -....++.|+|++|+|||+||.+++....... ..++|+.
T Consensus 7 ~lD~~l~GG-~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~ 60 (226)
T cd01393 7 ALDELLGGG-IPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID 60 (226)
T ss_pred HHHHHhCCC-CcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEe
Confidence 344555432 33468899999999999999999987654444 4567776
No 226
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.28 E-value=0.0013 Score=56.30 Aligned_cols=37 Identities=19% Similarity=0.244 Sum_probs=31.6
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEE
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMS 204 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 204 (349)
...++.|+|++|+|||++|.+++......-..++|+.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~ 47 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYID 47 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 4689999999999999999999987765556788887
No 227
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=97.26 E-value=0.0047 Score=56.33 Aligned_cols=48 Identities=21% Similarity=0.078 Sum_probs=33.0
Q ss_pred EEEcCCCCHHHHHHHHHhhhcCCCCCC-chHHHHHHHHHHHhcCCcccc
Q 037291 301 IHRVNGLEFEEAFEHFCNFAFKENHCP-TNLNWHSRRVVEYAKGNPLVL 348 (349)
Q Consensus 301 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~G~PLal 348 (349)
.++|++++.+|+..++..+.-.+--.. ...+...+++.-..+|+|--|
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999987764332111 222344566666779999644
No 228
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.26 E-value=0.001 Score=53.10 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=21.0
Q ss_pred EEEEeccCccchHHHHHHHHHhhh
Q 037291 171 IVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 171 ~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
+|.++|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 578999999999999999987653
No 229
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.23 E-value=0.0019 Score=56.49 Aligned_cols=49 Identities=16% Similarity=0.105 Sum_probs=34.4
Q ss_pred hhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEE
Q 037291 155 EQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMS 204 (349)
Q Consensus 155 ~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 204 (349)
..|.++|..+ -....++.|+|.+|+|||+|+.+++......-..++|+.
T Consensus 12 ~~LD~~l~gG-~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 12 EELDRKLGGG-IPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred HHHHHhhCCC-CcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 3444555433 334688999999999999999999765433445566766
No 230
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.0075 Score=53.42 Aligned_cols=173 Identities=17% Similarity=0.171 Sum_probs=92.1
Q ss_pred CcccccchhhhHHHhh---------hhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCCh
Q 037291 146 GLVGLNSRIEQIKPFL---------CMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGL 216 (349)
Q Consensus 146 ~~vGr~~~~~~l~~~L---------~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 216 (349)
..-|.+...+.|.+.. ........+-|.++|++|.|||.||++++.... ..|++ ++.
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn-----STFFS----vSS----- 199 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN-----STFFS----VSS----- 199 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC-----CceEE----eeh-----
Confidence 4678887777776643 222234478899999999999999999998643 22333 222
Q ss_pred HHHHHHHHHHhhcccccccCCCchHHHHHHh-CCCeEEEEEeCCCCh---------hHHH----HHhcccC---CCCCCc
Q 037291 217 EHLQKEMLSTILSEKLEVAGANIPHFTKERV-WRMKVLIVLDDVNEV---------GQLE----GLIGELD---QFGPGS 279 (349)
Q Consensus 217 ~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l-~~k~~LlVlDdv~~~---------~~~~----~l~~~~~---~~~~gs 279 (349)
.++.+...++. +.+...+.+.. .+++-+|++|.++.. +.-. .++-.+. ....|.
T Consensus 200 ----SDLvSKWmGES-----EkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gv 270 (439)
T KOG0739|consen 200 ----SDLVSKWMGES-----EKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGV 270 (439)
T ss_pred ----HHHHHHHhccH-----HHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCce
Confidence 12333333321 12222233322 467899999999622 1111 1221222 223466
Q ss_pred EEEEEeCChhHHHhcC-CCCCcEEEcCCCCHHHH-HHHHHhhhcCCCCCCchHHHHHHHHHHHhcCC
Q 037291 280 RIVVTTRDKGVLEKFR-GEEKKIHRVNGLEFEEA-FEHFCNFAFKENHCPTNLNWHSRRVVEYAKGN 344 (349)
Q Consensus 280 ~IIiTtR~~~~~~~~~-~~~~~~~~l~~L~~~ea-~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~ 344 (349)
.|+-.|.-+.++.+.- ..-...+-+ ||++..| ..+|.-+.+.-++. -.+.-.+++.+++.|.
T Consensus 271 LVLgATNiPw~LDsAIRRRFekRIYI-PLPe~~AR~~MF~lhlG~tp~~--LT~~d~~eL~~kTeGy 334 (439)
T KOG0739|consen 271 LVLGATNIPWVLDSAIRRRFEKRIYI-PLPEAHARARMFKLHLGDTPHV--LTEQDFKELARKTEGY 334 (439)
T ss_pred EEEecCCCchhHHHHHHHHhhcceec-cCCcHHHhhhhheeccCCCccc--cchhhHHHHHhhcCCC
Confidence 7777788777766531 001233333 3555455 45666666433222 1122245566666654
No 231
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.20 E-value=0.00048 Score=57.38 Aligned_cols=37 Identities=24% Similarity=0.539 Sum_probs=31.6
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEE
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMS 204 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 204 (349)
...+|.|.|++|+||||+|+.++..+...+...+++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 3468999999999999999999999887777777764
No 232
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=97.18 E-value=0.0035 Score=57.74 Aligned_cols=45 Identities=20% Similarity=0.175 Sum_probs=34.4
Q ss_pred cccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHh
Q 037291 147 LVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 147 ~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
++|....++++.+.+..- .....-|.|+|.+|+||+++|+.+.+.
T Consensus 1 liG~S~~m~~~~~~~~~~-a~~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRL-APLDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHH-hCCCCCEEEECCCCChHHHHHHHHHHh
Confidence 467777888877777655 233455679999999999999988764
No 233
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.18 E-value=0.0003 Score=55.00 Aligned_cols=22 Identities=41% Similarity=0.767 Sum_probs=20.4
Q ss_pred EEEeccCccchHHHHHHHHHhh
Q 037291 172 VGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 172 i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
|+|.|++|+||||||+++.++.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999874
No 234
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.17 E-value=0.0063 Score=56.63 Aligned_cols=36 Identities=19% Similarity=0.350 Sum_probs=27.7
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhhcCC--cceEEEE
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFTGEF--DGSCFMS 204 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~ 204 (349)
..+++++|+.|+||||++..++.+....+ ..+.++.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit 174 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLT 174 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 57899999999999999999998764333 3344443
No 235
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.17 E-value=0.0045 Score=50.46 Aligned_cols=24 Identities=21% Similarity=0.421 Sum_probs=20.5
Q ss_pred eeEEEEeccCccchHHHHHHHHHh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
...++++|++|+|||||...+..+
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~ 125 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSK 125 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcC
Confidence 356779999999999999999763
No 236
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.16 E-value=0.015 Score=57.12 Aligned_cols=171 Identities=15% Similarity=0.131 Sum_probs=101.7
Q ss_pred CCCCCcccccchhhhHHHhhhhcC--CCCeeEEEEeccCccchHHHHHHHHHhhh-----cC---CcceEEEEecccccc
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDL--SDTVQIVGIWGMGGIGKTTLAEAIFDQFT-----GE---FDGSCFMSDVRRNSE 211 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~--~~~~~~i~I~G~~GiGKTtLa~~~~~~~~-----~~---f~~~~~~~~~~~~~~ 211 (349)
..+..+-+|+.+..+|..++..-- +.....+-|+|.+|.|||..+..|.+.+. .. |+ .+.+... .
T Consensus 393 ~vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm----~ 467 (767)
T KOG1514|consen 393 AVPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGL----R 467 (767)
T ss_pred hccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcce----e
Confidence 345678899999999999886531 23455889999999999999999998543 12 33 2333311 1
Q ss_pred CCCChHHHHHHHHHHhhcccccccCCCchHHHHHHhC-----CCeEEEEEeCCCChhH--HHHHhcccCCC-CCCcEEEE
Q 037291 212 TGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERVW-----RMKVLIVLDDVNEVGQ--LEGLIGELDQF-GPGSRIVV 283 (349)
Q Consensus 212 ~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~-----~k~~LlVlDdv~~~~~--~~~l~~~~~~~-~~gs~IIi 283 (349)
-....+++..|...+.+...... ...+.+..++. .+.+++++|+++..-. -+-+-..+.|. .++|+++|
T Consensus 468 -l~~~~~~Y~~I~~~lsg~~~~~~--~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvv 544 (767)
T KOG1514|consen 468 -LASPREIYEKIWEALSGERVTWD--AALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVV 544 (767)
T ss_pred -ecCHHHHHHHHHHhcccCcccHH--HHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEE
Confidence 34577888888888776544332 12244444443 3478999999864421 12223334443 45676655
Q ss_pred EeC--ChhHHHhcC------CCCCcEEEcCCCCHHHHHHHHHhhh
Q 037291 284 TTR--DKGVLEKFR------GEEKKIHRVNGLEFEEAFEHFCNFA 320 (349)
Q Consensus 284 TtR--~~~~~~~~~------~~~~~~~~l~~L~~~ea~~Lf~~~a 320 (349)
.+= ..++.+.+- .-....+...|.+..+-.++...+.
T Consensus 545 i~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL 589 (767)
T KOG1514|consen 545 IAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARL 589 (767)
T ss_pred EEecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhh
Confidence 432 222211110 0123566777777777666665554
No 237
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.15 E-value=0.0015 Score=57.26 Aligned_cols=124 Identities=19% Similarity=0.185 Sum_probs=68.7
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEec--cccccCCCChHHHHHHHHHHhhccccc-------ccC-C
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDV--RRNSETGGGLEHLQKEMLSTILSEKLE-------VAG-A 237 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~--~~~~~~~~~~~~l~~~ll~~~~~~~~~-------~~~-~ 237 (349)
...+++|+|.+|+|||||++.+..-.... .+.+++..- .... .........+++...+..... .+. +
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt-~G~i~f~g~~i~~~~--~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPT-SGEILFEGKDITKLS--KEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCC-CceEEEcCcchhhcc--hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 45789999999999999999998765433 233444311 1111 112333444555554422111 111 1
Q ss_pred CchHHHHHHhCCCeEEEEEeCCCCh------hHHHHHhcccCCCCCCcEEEEEeCChhHHHhcC
Q 037291 238 NIPHFTKERVWRMKVLIVLDDVNEV------GQLEGLIGELDQFGPGSRIVVTTRDKGVLEKFR 295 (349)
Q Consensus 238 ~~~~~~~~~l~~k~~LlVlDdv~~~------~~~~~l~~~~~~~~~gs~IIiTtR~~~~~~~~~ 295 (349)
.-.-.+.+.+.-++-|+|.|+--.. .+.-.++..+.. ..|...++.|.+-.+...+.
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~-~~~lt~lFIsHDL~vv~~is 177 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE-ELGLTYLFISHDLSVVRYIS 177 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH-HhCCeEEEEEEEHHhhhhhc
Confidence 1123456677888999999987322 222233322221 23556777788877766654
No 238
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.0032 Score=58.20 Aligned_cols=97 Identities=21% Similarity=0.191 Sum_probs=58.9
Q ss_pred hhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHHHhhccccc
Q 037291 154 IEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLE 233 (349)
Q Consensus 154 ~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~ 233 (349)
+.++.+.|.-. -=...++.|-|-+|||||||..+++.++.... .+.|+.. ..++.+ .+--+.++......
T Consensus 79 ~~EldRVLGGG-~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsG-------EES~~Q-iklRA~RL~~~~~~ 148 (456)
T COG1066 79 IEELDRVLGGG-LVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSG-------EESLQQ-IKLRADRLGLPTNN 148 (456)
T ss_pred hHHHHhhhcCC-cccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeC-------CcCHHH-HHHHHHHhCCCccc
Confidence 34444545332 11357889999999999999999999988666 6777761 222222 23334444422211
Q ss_pred c---cCCCchHHHHHHhCCCeEEEEEeCCC
Q 037291 234 V---AGANIPHFTKERVWRMKVLIVLDDVN 260 (349)
Q Consensus 234 ~---~~~~~~~~~~~~l~~k~~LlVlDdv~ 260 (349)
. ....+..++...-..++-|+|+|-+.
T Consensus 149 l~l~aEt~~e~I~~~l~~~~p~lvVIDSIQ 178 (456)
T COG1066 149 LYLLAETNLEDIIAELEQEKPDLVVIDSIQ 178 (456)
T ss_pred eEEehhcCHHHHHHHHHhcCCCEEEEeccc
Confidence 1 22344344444445788999999883
No 239
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=97.14 E-value=0.0045 Score=57.12 Aligned_cols=49 Identities=31% Similarity=0.217 Sum_probs=39.3
Q ss_pred CCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCc
Q 037291 145 NGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFD 198 (349)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~ 198 (349)
..++|.+..+..+...+... +.+.+.|++|+|||+||+.++..+...|.
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~-----~~vll~G~PG~gKT~la~~lA~~l~~~~~ 72 (329)
T COG0714 24 KVVVGDEEVIELALLALLAG-----GHVLLEGPPGVGKTLLARALARALGLPFV 72 (329)
T ss_pred CeeeccHHHHHHHHHHHHcC-----CCEEEECCCCccHHHHHHHHHHHhCCCeE
Confidence 34888888888777666655 66789999999999999999998764444
No 240
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=97.13 E-value=0.0085 Score=58.79 Aligned_cols=49 Identities=20% Similarity=0.092 Sum_probs=37.5
Q ss_pred CCCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHH
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFD 191 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~ 191 (349)
.....++|....++++.+.+..- ...-..|.|+|..|+||+++|+.+..
T Consensus 201 ~~f~~~ig~s~~~~~~~~~~~~~-A~~~~pvlI~GE~GtGK~~lA~aiH~ 249 (520)
T PRK10820 201 SAFSQIVAVSPKMRQVVEQARKL-AMLDAPLLITGDTGTGKDLLAYACHL 249 (520)
T ss_pred ccccceeECCHHHHHHHHHHHHH-hCCCCCEEEECCCCccHHHHHHHHHH
Confidence 44568999999888888777643 22234467999999999999999654
No 241
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.13 E-value=0.024 Score=53.75 Aligned_cols=29 Identities=21% Similarity=0.328 Sum_probs=24.7
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcC
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGE 196 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 196 (349)
...+|.++|++|+||||++..++..++..
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~ 127 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRK 127 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 46899999999999999999998766543
No 242
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.12 E-value=0.0021 Score=56.03 Aligned_cols=37 Identities=19% Similarity=0.190 Sum_probs=27.3
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEE
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMS 204 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 204 (349)
...++.|.|++|+||||||.+++......-..++|+.
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 3568999999999999999877765533334456665
No 243
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=97.12 E-value=0.0013 Score=54.55 Aligned_cols=36 Identities=25% Similarity=0.243 Sum_probs=28.2
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhh-cCCcceEEEE
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFT-GEFDGSCFMS 204 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~-~~f~~~~~~~ 204 (349)
...+.+.|+.|+|||.||+.+++.+. ......+-+.
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d 39 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRID 39 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHh
Confidence 46788999999999999999999887 4544444443
No 244
>PRK10867 signal recognition particle protein; Provisional
Probab=97.12 E-value=0.018 Score=54.83 Aligned_cols=29 Identities=24% Similarity=0.361 Sum_probs=24.5
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcC
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGE 196 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 196 (349)
...+|.++|++|+||||++..++..+...
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 46889999999999999999888766544
No 245
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.014 Score=50.50 Aligned_cols=148 Identities=21% Similarity=0.342 Sum_probs=83.4
Q ss_pred ccc-ccchhhhHHHhhhhc----------CCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCC
Q 037291 147 LVG-LNSRIEQIKPFLCMD----------LSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGG 215 (349)
Q Consensus 147 ~vG-r~~~~~~l~~~L~~~----------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 215 (349)
+|| .+..++++.+.+.-. .-..+.-+.++|++|.|||-||+.+++.. .+.|+. ++.
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht-----~c~fir----vsg---- 214 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT-----DCTFIR----VSG---- 214 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc-----ceEEEE----ech----
Confidence 444 466666666554322 11245678899999999999999999854 234444 222
Q ss_pred hHHHHHHHHHHhhcccccccCCCchHHHHHHh----CCCeEEEEEeCCCChh----------------HHHHHhcccCCC
Q 037291 216 LEHLQKEMLSTILSEKLEVAGANIPHFTKERV----WRMKVLIVLDDVNEVG----------------QLEGLIGELDQF 275 (349)
Q Consensus 216 ~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l----~~k~~LlVlDdv~~~~----------------~~~~l~~~~~~~ 275 (349)
..+.+.. .++.. ..+++.+ .+-+-+++.|.++... ..-.++..+..|
T Consensus 215 -selvqk~----igegs--------rmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgf 281 (404)
T KOG0728|consen 215 -SELVQKY----IGEGS--------RMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGF 281 (404)
T ss_pred -HHHHHHH----hhhhH--------HHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccc
Confidence 1222222 11111 2222222 3457888899886331 122333444433
Q ss_pred --CCCcEEEEEeCChhHHHhc--C-CCCCcEEEcCCCCHHHHHHHHHhhh
Q 037291 276 --GPGSRIVVTTRDKGVLEKF--R-GEEKKIHRVNGLEFEEAFEHFCNFA 320 (349)
Q Consensus 276 --~~gs~IIiTtR~~~~~~~~--~-~~~~~~~~l~~L~~~ea~~Lf~~~a 320 (349)
..+-+||..|..-+++... . +..+..++.++-+.+.-.+++.-+.
T Consensus 282 eatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 282 EATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred ccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 3456888877655543332 1 2245778888888887777776544
No 246
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.11 E-value=0.0067 Score=50.88 Aligned_cols=27 Identities=30% Similarity=0.465 Sum_probs=23.3
Q ss_pred eEEEEeccCccchHHHHHHHHHhhhcC
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQFTGE 196 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~~~~ 196 (349)
+.|.++|.+|+||||+|+++++.+++.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHh
Confidence 467899999999999999999876554
No 247
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.11 E-value=0.00043 Score=58.74 Aligned_cols=26 Identities=42% Similarity=0.598 Sum_probs=23.4
Q ss_pred EEEEeccCccchHHHHHHHHHhhhcC
Q 037291 171 IVGIWGMGGIGKTTLAEAIFDQFTGE 196 (349)
Q Consensus 171 ~i~I~G~~GiGKTtLa~~~~~~~~~~ 196 (349)
+|+|.|++|+||||+|+.+...+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 68999999999999999999987643
No 248
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.11 E-value=0.017 Score=54.87 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=23.5
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
.+.++.++|++|+||||+|..++..+.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 367899999999999999999988754
No 249
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.10 E-value=0.0035 Score=55.82 Aligned_cols=106 Identities=15% Similarity=0.139 Sum_probs=62.6
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHHHhC
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERVW 248 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~ 248 (349)
...+.|.|+.|.||||+++.+...+...-..++.+.+..+... .+. .++.. ...........++..++
T Consensus 80 ~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~--~~~--------~q~~v--~~~~~~~~~~~l~~~lR 147 (264)
T cd01129 80 HGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQI--PGI--------NQVQV--NEKAGLTFARGLRAILR 147 (264)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecC--CCc--------eEEEe--CCcCCcCHHHHHHHHhc
Confidence 4678999999999999999998876442233444443332211 010 00000 00011234577888888
Q ss_pred CCeEEEEEeCCCChhHHHHHhcccCCCCCCcEEEEEeCChh
Q 037291 249 RMKVLIVLDDVNEVGQLEGLIGELDQFGPGSRIVVTTRDKG 289 (349)
Q Consensus 249 ~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IIiTtR~~~ 289 (349)
..+=.++++++.+.+....++.... .|..++-|..-.+
T Consensus 148 ~~PD~i~vgEiR~~e~a~~~~~aa~---tGh~v~tTlHa~~ 185 (264)
T cd01129 148 QDPDIIMVGEIRDAETAEIAVQAAL---TGHLVLSTLHTND 185 (264)
T ss_pred cCCCEEEeccCCCHHHHHHHHHHHH---cCCcEEEEeccCC
Confidence 8899999999998876655444322 3444554444443
No 250
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.09 E-value=0.0015 Score=53.75 Aligned_cols=118 Identities=13% Similarity=0.155 Sum_probs=60.8
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHHHhhcccccccC-CCchHHHHHH
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAG-ANIPHFTKER 246 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~-~~~~~~~~~~ 246 (349)
...+++|.|+.|.|||||.+.++-... ...+.+++.... .. ....... ..+........+. +...-.+.+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~v~~~g~~-~~--~~~~~~~----~~~~i~~~~qLS~G~~qrl~lara 96 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYK-PDSGEILVDGKE-VS--FASPRDA----RRAGIAMVYQLSVGERQMVEIARA 96 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEE-CC--cCCHHHH----HhcCeEEEEecCHHHHHHHHHHHH
Confidence 347899999999999999999987543 234555554211 11 1111111 1110000000111 1111334455
Q ss_pred hCCCeEEEEEeCCC---ChhHHHHHhcccCCC-CCCcEEEEEeCChhHHHh
Q 037291 247 VWRMKVLIVLDDVN---EVGQLEGLIGELDQF-GPGSRIVVTTRDKGVLEK 293 (349)
Q Consensus 247 l~~k~~LlVlDdv~---~~~~~~~l~~~~~~~-~~gs~IIiTtR~~~~~~~ 293 (349)
+-.++-++++|+-. |....+.+...+... ..+..||++|.+...+..
T Consensus 97 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 147 (163)
T cd03216 97 LARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFE 147 (163)
T ss_pred HhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 56678899999873 223333333332221 236678888888765443
No 251
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.09 E-value=0.0032 Score=52.69 Aligned_cols=122 Identities=17% Similarity=0.248 Sum_probs=63.5
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHH------HHHHHHHhhccccc-----ccC
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHL------QKEMLSTILSEKLE-----VAG 236 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l------~~~ll~~~~~~~~~-----~~~ 236 (349)
...+++|.|+.|.|||||++.++-... ...+.+++.... .. ....... ..+++..+...... .-+
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~-~~~G~v~~~g~~-~~--~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS 99 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLK-PSSGEILLDGKD-LA--SLSPKELARKIAYVPQALELLGLAHLADRPFNELS 99 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEE-CC--cCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCC
Confidence 347899999999999999999987543 234555553211 11 1111111 11133333221111 111
Q ss_pred --CCchHHHHHHhCCCeEEEEEeCCC---ChhHHHHHhcccCCC-CC-CcEEEEEeCChhHHHh
Q 037291 237 --ANIPHFTKERVWRMKVLIVLDDVN---EVGQLEGLIGELDQF-GP-GSRIVVTTRDKGVLEK 293 (349)
Q Consensus 237 --~~~~~~~~~~l~~k~~LlVlDdv~---~~~~~~~l~~~~~~~-~~-gs~IIiTtR~~~~~~~ 293 (349)
+...-.+.+.+-..+-++++|+-. |....+.+...+... .. +..||++|.+......
T Consensus 100 ~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~ 163 (180)
T cd03214 100 GGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAAR 163 (180)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 111223445566778899999873 223333333332222 22 5678888888766543
No 252
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.08 E-value=0.0027 Score=51.08 Aligned_cols=105 Identities=18% Similarity=0.272 Sum_probs=56.1
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHHHh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERV 247 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l 247 (349)
...+++|.|+.|.|||||++.++..... ..+.+++.......- -.. ++. . +...-.+.+.+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~~~~~i~~-~~~--------lS~--------G-~~~rv~laral 85 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELEP-DEGIVTWGSTVKIGY-FEQ--------LSG--------G-EKMRLALAKLL 85 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCC-CceEEEECCeEEEEE-Ecc--------CCH--------H-HHHHHHHHHHH
Confidence 3478999999999999999999875432 244444432111100 000 000 0 00012234445
Q ss_pred CCCeEEEEEeCCC---ChhHHHHHhcccCCCCCCcEEEEEeCChhHHHh
Q 037291 248 WRMKVLIVLDDVN---EVGQLEGLIGELDQFGPGSRIVVTTRDKGVLEK 293 (349)
Q Consensus 248 ~~k~~LlVlDdv~---~~~~~~~l~~~~~~~~~gs~IIiTtR~~~~~~~ 293 (349)
..++-++++|+-. |......+...+... +..||++|.+......
T Consensus 86 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~ 132 (144)
T cd03221 86 LENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQ 132 (144)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHH
Confidence 5667789999873 333333333333222 2468888887665544
No 253
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.08 E-value=0.002 Score=56.23 Aligned_cols=47 Identities=21% Similarity=0.234 Sum_probs=32.5
Q ss_pred HHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcC------CcceEEEE
Q 037291 157 IKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGE------FDGSCFMS 204 (349)
Q Consensus 157 l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~------f~~~~~~~ 204 (349)
|..+|... -....++.|+|++|+|||+||.+++...... -..++|+.
T Consensus 8 lD~~l~GG-i~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~ 60 (235)
T cd01123 8 LDELLGGG-IETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYID 60 (235)
T ss_pred hHhhccCC-CCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEe
Confidence 44444432 2346889999999999999999998653222 25677776
No 254
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.0029 Score=54.59 Aligned_cols=153 Identities=20% Similarity=0.304 Sum_probs=80.9
Q ss_pred CcccccchhhhHHHhhhhc----------CCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCC
Q 037291 146 GLVGLNSRIEQIKPFLCMD----------LSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGG 215 (349)
Q Consensus 146 ~~vGr~~~~~~l~~~L~~~----------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 215 (349)
.+=|.+-..+++.+...-. .-+..+-|.++|++|+|||.||++++++....| +..++
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~f-----irvvg-------- 222 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAF-----IRVVG-------- 222 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchhe-----eeecc--------
Confidence 3456666666665544321 124578888999999999999999999765443 33111
Q ss_pred hHHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCChh----------------HHHHHhcccCCCCC--
Q 037291 216 LEHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEVG----------------QLEGLIGELDQFGP-- 277 (349)
Q Consensus 216 ~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~~----------------~~~~l~~~~~~~~~-- 277 (349)
.++....+++.+.. +.+.++-.-.+-+.++++|.++... .+-.++..+..|.+
T Consensus 223 -----sefvqkylgegprm----vrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~ 293 (408)
T KOG0727|consen 223 -----SEFVQKYLGEGPRM----VRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTT 293 (408)
T ss_pred -----HHHHHHHhccCcHH----HHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCccc
Confidence 11222222322210 1111111223457889999886321 12334444444433
Q ss_pred CcEEEEEeCChhHHHh--cC-CCCCcEEEcCCCCHHHHHHHHHhhh
Q 037291 278 GSRIVVTTRDKGVLEK--FR-GEEKKIHRVNGLEFEEAFEHFCNFA 320 (349)
Q Consensus 278 gs~IIiTtR~~~~~~~--~~-~~~~~~~~l~~L~~~ea~~Lf~~~a 320 (349)
+.++|+.|...+.+.. +. +..+..++.+--+..+-.-.|....
T Consensus 294 nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~tit 339 (408)
T KOG0727|consen 294 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTIT 339 (408)
T ss_pred ceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhh
Confidence 4577776654332211 11 1234667777555666666665544
No 255
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.07 E-value=0.0042 Score=51.50 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=22.8
Q ss_pred EEEEeccCccchHHHHHHHHHhhhcC
Q 037291 171 IVGIWGMGGIGKTTLAEAIFDQFTGE 196 (349)
Q Consensus 171 ~i~I~G~~GiGKTtLa~~~~~~~~~~ 196 (349)
++.+.|++|+||||++..++..+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 57899999999999999999877655
No 256
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.06 E-value=0.0039 Score=59.81 Aligned_cols=97 Identities=19% Similarity=0.181 Sum_probs=54.8
Q ss_pred hhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHHHhhccc--
Q 037291 154 IEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEK-- 231 (349)
Q Consensus 154 ~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~-- 231 (349)
+..+.++|... -....++.|.|.+|+|||||+.+++......-..++|+. . .....++... +..+....
T Consensus 66 i~~LD~~LgGG-i~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs----~---Ees~~qi~~r-a~rlg~~~~~ 136 (446)
T PRK11823 66 IGELDRVLGGG-LVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS----G---EESASQIKLR-AERLGLPSDN 136 (446)
T ss_pred cHHHHHHhcCC-ccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE----c---cccHHHHHHH-HHHcCCChhc
Confidence 44555666433 233578899999999999999999987754434566765 1 1223333222 23332211
Q ss_pred ccc-cCCCchHHHHHHh-CCCeEEEEEeCCC
Q 037291 232 LEV-AGANIPHFTKERV-WRMKVLIVLDDVN 260 (349)
Q Consensus 232 ~~~-~~~~~~~~~~~~l-~~k~~LlVlDdv~ 260 (349)
... ....+ +.+.+.+ ..+.-++|+|.+.
T Consensus 137 l~~~~e~~l-~~i~~~i~~~~~~lVVIDSIq 166 (446)
T PRK11823 137 LYLLAETNL-EAILATIEEEKPDLVVIDSIQ 166 (446)
T ss_pred EEEeCCCCH-HHHHHHHHhhCCCEEEEechh
Confidence 111 11223 3333333 3466789999983
No 257
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.03 E-value=0.0032 Score=52.15 Aligned_cols=35 Identities=26% Similarity=0.407 Sum_probs=26.5
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEE
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFM 203 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 203 (349)
...+++|.|+.|.|||||.+.++-.... ..+.+++
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~~-~~G~i~~ 61 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYDP-TSGEILI 61 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCC-CCCEEEE
Confidence 3478999999999999999999875432 3444444
No 258
>PRK09354 recA recombinase A; Provisional
Probab=97.00 E-value=0.003 Score=58.10 Aligned_cols=50 Identities=24% Similarity=0.193 Sum_probs=36.3
Q ss_pred hhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEE
Q 037291 155 EQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMS 204 (349)
Q Consensus 155 ~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 204 (349)
..|..+|.-..=...+++-|+|++|+||||||.+++......-..++|+.
T Consensus 46 ~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId 95 (349)
T PRK09354 46 LALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 95 (349)
T ss_pred HHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC
Confidence 34555564121334688999999999999999999887665556677776
No 259
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.00 E-value=0.0036 Score=52.15 Aligned_cols=23 Identities=30% Similarity=0.396 Sum_probs=20.5
Q ss_pred CeeEEEEeccCccchHHHHHHHH
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIF 190 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~ 190 (349)
...+++|.|+.|+|||||.+.+.
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 34789999999999999999885
No 260
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.99 E-value=0.00074 Score=65.41 Aligned_cols=52 Identities=29% Similarity=0.394 Sum_probs=42.1
Q ss_pred CCcccccchhhhHHHhhhhc---CCCCeeEEEEeccCccchHHHHHHHHHhhhcC
Q 037291 145 NGLVGLNSRIEQIKPFLCMD---LSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGE 196 (349)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~---~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 196 (349)
..++|.+..++++.+.|... .....+++.++||+|+||||||+.+++-+...
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~ 130 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMERV 130 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHhC
Confidence 46899999999999988321 23456899999999999999999999866433
No 261
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.97 E-value=0.00076 Score=57.88 Aligned_cols=27 Identities=41% Similarity=0.674 Sum_probs=24.4
Q ss_pred CCeeEEEEeccCccchHHHHHHHHHhh
Q 037291 167 DTVQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 167 ~~~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
....+|+|.|.+|+|||||++.++..+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356899999999999999999999876
No 262
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.97 E-value=0.0033 Score=52.07 Aligned_cols=53 Identities=15% Similarity=0.301 Sum_probs=36.3
Q ss_pred HHHHHHhCCCeEEEEEeC----CCChhHHH--HHhcccCCCCCCcEEEEEeCChhHHHhcC
Q 037291 241 HFTKERVWRMKVLIVLDD----VNEVGQLE--GLIGELDQFGPGSRIVVTTRDKGVLEKFR 295 (349)
Q Consensus 241 ~~~~~~l~~k~~LlVlDd----v~~~~~~~--~l~~~~~~~~~gs~IIiTtR~~~~~~~~~ 295 (349)
-.+.+.+-+++-||+-|+ +|....|+ .++..++ ..|+.||++|.+..+.+.+.
T Consensus 146 vaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeein--r~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 146 VAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEIN--RLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHh--hcCcEEEEEeccHHHHHhcc
Confidence 445666778899999994 44433333 2333333 56889999999999887764
No 263
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.97 E-value=0.00044 Score=52.59 Aligned_cols=25 Identities=36% Similarity=0.583 Sum_probs=21.5
Q ss_pred EEEeccCccchHHHHHHHHHhhhcC
Q 037291 172 VGIWGMGGIGKTTLAEAIFDQFTGE 196 (349)
Q Consensus 172 i~I~G~~GiGKTtLa~~~~~~~~~~ 196 (349)
|.|+|++|+|||+||..++..+...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHH
Confidence 4689999999999999999876544
No 264
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.027 Score=49.02 Aligned_cols=27 Identities=33% Similarity=0.320 Sum_probs=22.6
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
.+.-+..+|++|.|||-+|++.+.+..
T Consensus 204 pPKGvLmYGPPGTGKTlmARAcAaqT~ 230 (424)
T KOG0652|consen 204 PPKGVLMYGPPGTGKTLMARACAAQTN 230 (424)
T ss_pred CCCceEeeCCCCCcHHHHHHHHHHhcc
Confidence 356678999999999999999987643
No 265
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.94 E-value=0.0054 Score=51.13 Aligned_cols=26 Identities=23% Similarity=0.422 Sum_probs=22.5
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
...+++|.|+.|.|||||++.++-..
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34789999999999999999998754
No 266
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.94 E-value=0.0059 Score=58.67 Aligned_cols=51 Identities=22% Similarity=0.161 Sum_probs=36.6
Q ss_pred hhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEE
Q 037291 153 RIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMS 204 (349)
Q Consensus 153 ~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 204 (349)
-+..+.++|... -....++.|.|.+|+|||||+.+++......-..++|+.
T Consensus 79 Gi~~LD~vLgGG-i~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs 129 (454)
T TIGR00416 79 GFGELDRVLGGG-IVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS 129 (454)
T ss_pred CcHHHHHHhcCC-ccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 345566666433 234578899999999999999999887654434566775
No 267
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.94 E-value=0.0056 Score=57.39 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=23.7
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
..+++.++|+.|+||||.+..++..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999988764
No 268
>PTZ00301 uridine kinase; Provisional
Probab=96.93 E-value=0.00081 Score=57.66 Aligned_cols=27 Identities=30% Similarity=0.621 Sum_probs=23.6
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhhc
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFTG 195 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~~ 195 (349)
..+|+|.|.+|+||||||+.+.+++..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~ 29 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMA 29 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHh
Confidence 478999999999999999999877643
No 269
>PRK08233 hypothetical protein; Provisional
Probab=96.92 E-value=0.00075 Score=56.37 Aligned_cols=26 Identities=35% Similarity=0.507 Sum_probs=23.3
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
..+|+|.|++|+||||||+.++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 47899999999999999999998764
No 270
>PRK06762 hypothetical protein; Provisional
Probab=96.92 E-value=0.0008 Score=55.44 Aligned_cols=25 Identities=32% Similarity=0.545 Sum_probs=22.7
Q ss_pred eeEEEEeccCccchHHHHHHHHHhh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
..+|.|+|++|+||||+|+.+.+.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3688999999999999999999876
No 271
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.0038 Score=59.36 Aligned_cols=153 Identities=22% Similarity=0.252 Sum_probs=78.3
Q ss_pred Ccccccc---hhhhHHHhhhhcC-----CC-CeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCCh
Q 037291 146 GLVGLNS---RIEQIKPFLCMDL-----SD-TVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGL 216 (349)
Q Consensus 146 ~~vGr~~---~~~~l~~~L~~~~-----~~-~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 216 (349)
..-|.|+ |++++.++|.+.. .+ =++-|.++|++|.|||-||++++-...-- .|.. + ...+
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP----FF~~-----s--GSEF 373 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP----FFYA-----S--GSEF 373 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC----eEec-----c--ccch
Confidence 3455554 5666677776540 11 25678899999999999999998753221 1221 1 0111
Q ss_pred HHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCCh-------------hHHHHHhcccCCCCCCcEE--
Q 037291 217 EHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEV-------------GQLEGLIGELDQFGPGSRI-- 281 (349)
Q Consensus 217 ~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~-------------~~~~~l~~~~~~~~~gs~I-- 281 (349)
..++-. .+. ..+.+.+...-..-+++|++|+++.. ..+++++..+..|.++.-|
T Consensus 374 dEm~VG----vGA-------rRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIv 442 (752)
T KOG0734|consen 374 DEMFVG----VGA-------RRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIV 442 (752)
T ss_pred hhhhhc----ccH-------HHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEE
Confidence 111100 000 00112222222345899999998632 1367777777777654433
Q ss_pred EEEeCChhHHHhc-C--CCCCcEEEcCCCCHHHHHHHHHhhh
Q 037291 282 VVTTRDKGVLEKF-R--GEEKKIHRVNGLEFEEAFEHFCNFA 320 (349)
Q Consensus 282 IiTtR~~~~~~~~-~--~~~~~~~~l~~L~~~ea~~Lf~~~a 320 (349)
|-.|.-++.+... - +.-+..+.|+.-+-.--.++|..+.
T Consensus 443 igATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl 484 (752)
T KOG0734|consen 443 IGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYL 484 (752)
T ss_pred EeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHH
Confidence 3334444433331 1 1123455555555444455555544
No 272
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.92 E-value=0.0037 Score=51.54 Aligned_cols=119 Identities=14% Similarity=0.148 Sum_probs=57.8
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEe---ccccccCC-CChHHHHHHHHHHhhcccccccC-CCchHH
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSD---VRRNSETG-GGLEHLQKEMLSTILSEKLEVAG-ANIPHF 242 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~---~~~~~~~~-~~~~~l~~~ll~~~~~~~~~~~~-~~~~~~ 242 (349)
...+++|.|+.|.|||||++.++-..... .+.+++.. +.-..+.. .....+...+... .....+. +...-.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~ 101 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWG-SGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WDDVLSGGEQQRLA 101 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCCceEEEECCCCccccccHHHHhhcc---CCCCCCHHHHHHHH
Confidence 34789999999999999999998754322 22222211 00011101 0011222222110 0001111 112233
Q ss_pred HHHHhCCCeEEEEEeCCC---ChhHHHHHhcccCCCCCCcEEEEEeCChhHHH
Q 037291 243 TKERVWRMKVLIVLDDVN---EVGQLEGLIGELDQFGPGSRIVVTTRDKGVLE 292 (349)
Q Consensus 243 ~~~~l~~k~~LlVlDdv~---~~~~~~~l~~~~~~~~~gs~IIiTtR~~~~~~ 292 (349)
+.+.+-.++=+++||+-. |......+...+... +..+|++|.+.....
T Consensus 102 laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 102 FARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred HHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 445556677888999873 222223333322222 356788887766543
No 273
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.92 E-value=0.0056 Score=54.08 Aligned_cols=26 Identities=19% Similarity=0.548 Sum_probs=22.3
Q ss_pred EEEEeccCccchHHHHHHHHHhhhcC
Q 037291 171 IVGIWGMGGIGKTTLAEAIFDQFTGE 196 (349)
Q Consensus 171 ~i~I~G~~GiGKTtLa~~~~~~~~~~ 196 (349)
.|.++|++|+||||+|+.+.+.+...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~ 26 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEK 26 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 37899999999999999999877543
No 274
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.92 E-value=0.00076 Score=46.80 Aligned_cols=23 Identities=39% Similarity=0.625 Sum_probs=21.0
Q ss_pred EEEEeccCccchHHHHHHHHHhh
Q 037291 171 IVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 171 ~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
+++|.|.+|+||||+++.+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999886
No 275
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.92 E-value=0.005 Score=52.28 Aligned_cols=104 Identities=18% Similarity=0.226 Sum_probs=53.7
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHHHh-
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERV- 247 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l- 247 (349)
-++..|.|++|.||||+++.+...+...-..++++. .+ . .....+.......... +...+....
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~a----pT--~----~Aa~~L~~~~~~~a~T-----i~~~l~~~~~ 82 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLA----PT--N----KAAKELREKTGIEAQT-----IHSFLYRIPN 82 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEE----SS--H----HHHHHHHHHHTS-EEE-----HHHHTTEECC
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEEC----Cc--H----HHHHHHHHhhCcchhh-----HHHHHhcCCc
Confidence 367889999999999999998887665433334443 11 1 1222222222111000 000000000
Q ss_pred --------CCCeEEEEEeCCC--ChhHHHHHhcccCCCCCCcEEEEEeCChh
Q 037291 248 --------WRMKVLIVLDDVN--EVGQLEGLIGELDQFGPGSRIVVTTRDKG 289 (349)
Q Consensus 248 --------~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IIiTtR~~~ 289 (349)
..+.-+||+|++. +..++..+..... ..++++|+.--..+
T Consensus 83 ~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~--~~~~klilvGD~~Q 132 (196)
T PF13604_consen 83 GDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAK--KSGAKLILVGDPNQ 132 (196)
T ss_dssp EECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS---T-T-EEEEEE-TTS
T ss_pred ccccccccCCcccEEEEecccccCHHHHHHHHHHHH--hcCCEEEEECCcch
Confidence 1223599999996 4456777766655 25778888766554
No 276
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.92 E-value=0.0044 Score=55.25 Aligned_cols=118 Identities=16% Similarity=0.137 Sum_probs=64.6
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHHHhhcccc----cc-cCCCchHH
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKL----EV-AGANIPHF 242 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~----~~-~~~~~~~~ 242 (349)
....++|.|+.|.|||||.+.++..+... ...+++.... +.. ......+...+ ..+..... .. +......-
T Consensus 110 ~~~~~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~~g~~-v~~-~d~~~ei~~~~-~~~~q~~~~~r~~v~~~~~k~~~ 185 (270)
T TIGR02858 110 RVLNTLIISPPQCGKTTLLRDLARILSTG-ISQLGLRGKK-VGI-VDERSEIAGCV-NGVPQHDVGIRTDVLDGCPKAEG 185 (270)
T ss_pred CeeEEEEEcCCCCCHHHHHHHHhCccCCC-CceEEECCEE-eec-chhHHHHHHHh-cccccccccccccccccchHHHH
Confidence 45789999999999999999999876533 3334442110 110 01112222111 00111100 00 11001122
Q ss_pred HHHHh-CCCeEEEEEeCCCChhHHHHHhcccCCCCCCcEEEEEeCChhHHH
Q 037291 243 TKERV-WRMKVLIVLDDVNEVGQLEGLIGELDQFGPGSRIVVTTRDKGVLE 292 (349)
Q Consensus 243 ~~~~l-~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IIiTtR~~~~~~ 292 (349)
+...+ ...+=++++|++...+.+..+...+. .|..+|+||.+..+..
T Consensus 186 ~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 186 MMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDVED 233 (270)
T ss_pred HHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHHHH
Confidence 22232 35788999999987776776665543 4778999999766643
No 277
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.92 E-value=0.0016 Score=56.68 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=20.9
Q ss_pred EEEEeccCccchHHHHHHHHHhh
Q 037291 171 IVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 171 ~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
.|.|.|++|+||||+|+.+++++
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999875
No 278
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=96.91 E-value=0.011 Score=57.33 Aligned_cols=48 Identities=21% Similarity=0.276 Sum_probs=38.0
Q ss_pred CCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHh
Q 037291 144 SNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
...++|....+..+.+.+..- ......+.|+|.+|+|||++|+.+.+.
T Consensus 137 ~~~lig~s~~~~~l~~~~~~~-~~~~~~vli~Ge~GtGK~~lA~~ih~~ 184 (469)
T PRK10923 137 TTDIIGEAPAMQDVFRIIGRL-SRSSISVLINGESGTGKELVAHALHRH 184 (469)
T ss_pred cccceecCHHHHHHHHHHHHH-hccCCeEEEEeCCCCcHHHHHHHHHhc
Confidence 346899999888888777654 334455779999999999999998774
No 279
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.88 E-value=0.007 Score=54.11 Aligned_cols=36 Identities=17% Similarity=0.290 Sum_probs=27.9
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEE
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFM 203 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 203 (349)
..+++.++|++|+||||++..++..+...-..+.++
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li 106 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLA 106 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 468999999999999999999998776543334444
No 280
>PRK14528 adenylate kinase; Provisional
Probab=96.87 E-value=0.023 Score=47.79 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=21.2
Q ss_pred eEEEEeccCccchHHHHHHHHHhh
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
+.|.|.|++|+||||+|+.+++.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999998765
No 281
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.87 E-value=0.0026 Score=51.87 Aligned_cols=117 Identities=22% Similarity=0.256 Sum_probs=60.5
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHHHhhcccccccC-CCchHHHHHHh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAG-ANIPHFTKERV 247 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~-~~~~~~~~~~l 247 (349)
..+++|.|..|.|||||++.++..+. .....+++.... .. ........ ..+.-. ...+. +...-.+...+
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~~-~~~G~i~~~~~~-~~--~~~~~~~~----~~i~~~-~qlS~G~~~r~~l~~~l 95 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLLK-PTSGEILIDGKD-IA--KLPLEELR----RRIGYV-PQLSGGQRQRVALARAL 95 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCEE-cc--cCCHHHHH----hceEEE-eeCCHHHHHHHHHHHHH
Confidence 37899999999999999999987653 345555554211 11 00011110 000000 00000 11112344445
Q ss_pred CCCeEEEEEeCCC---ChhHHHHHhcccCCC-CCCcEEEEEeCChhHHHhc
Q 037291 248 WRMKVLIVLDDVN---EVGQLEGLIGELDQF-GPGSRIVVTTRDKGVLEKF 294 (349)
Q Consensus 248 ~~k~~LlVlDdv~---~~~~~~~l~~~~~~~-~~gs~IIiTtR~~~~~~~~ 294 (349)
...+-++++|+.. |......+...+... ..+..+|++|.+......+
T Consensus 96 ~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 96 LLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA 146 (157)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 5567899999884 322233332222211 2246788888887776654
No 282
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.008 Score=52.37 Aligned_cols=52 Identities=27% Similarity=0.429 Sum_probs=35.9
Q ss_pred ccccchhhhHHHhhhhc----------CCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEE
Q 037291 148 VGLNSRIEQIKPFLCMD----------LSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMS 204 (349)
Q Consensus 148 vGr~~~~~~l~~~L~~~----------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 204 (349)
=|=.++++++.+..... .-+...-|.++|++|.|||-+|++++++. ..||+.
T Consensus 180 ggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt-----dacfir 241 (435)
T KOG0729|consen 180 GGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT-----DACFIR 241 (435)
T ss_pred cchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc-----CceEEe
Confidence 34455566665543321 12346778899999999999999999874 357776
No 283
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.85 E-value=0.0014 Score=55.73 Aligned_cols=30 Identities=43% Similarity=0.595 Sum_probs=26.7
Q ss_pred CCeeEEEEeccCccchHHHHHHHHHhhhcC
Q 037291 167 DTVQIVGIWGMGGIGKTTLAEAIFDQFTGE 196 (349)
Q Consensus 167 ~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 196 (349)
..+.+|+|.|.+|+||||+|+.++..+...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 356899999999999999999999988755
No 284
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.84 E-value=0.00079 Score=52.31 Aligned_cols=28 Identities=39% Similarity=0.503 Sum_probs=20.3
Q ss_pred EEEeccCccchHHHHHHHHHhhhcCCcc
Q 037291 172 VGIWGMGGIGKTTLAEAIFDQFTGEFDG 199 (349)
Q Consensus 172 i~I~G~~GiGKTtLa~~~~~~~~~~f~~ 199 (349)
|.|+|.+|+||||+|+.++..+...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeE
Confidence 6799999999999999999988777654
No 285
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.84 E-value=0.0024 Score=56.97 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=21.1
Q ss_pred eEEEEeccCccchHHHHHHHHHhhhcC
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQFTGE 196 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~~~~ 196 (349)
+.|.|+|.+|+||||+|+++...+...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~ 28 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEK 28 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhc
Confidence 578899999999999999999876653
No 286
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.011 Score=58.62 Aligned_cols=123 Identities=23% Similarity=0.303 Sum_probs=68.9
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHHHhC
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERVW 248 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~ 248 (349)
..-|.++|++|.|||-||++++.... .-|+. + .++ +++....++. ++.+.+...+.-.
T Consensus 705 RSGILLYGPPGTGKTLlAKAVATEcs-----L~FlS----V----KGP-----ELLNMYVGqS----E~NVR~VFerAR~ 762 (953)
T KOG0736|consen 705 RSGILLYGPPGTGKTLLAKAVATECS-----LNFLS----V----KGP-----ELLNMYVGQS----EENVREVFERARS 762 (953)
T ss_pred cceeEEECCCCCchHHHHHHHHhhce-----eeEEe----e----cCH-----HHHHHHhcch----HHHHHHHHHHhhc
Confidence 45677999999999999999998654 23343 1 111 1222222221 1333344444455
Q ss_pred CCeEEEEEeCCCChh---------------HHHHHhcccCCCCC----CcEEEEEeCChhHHHhc--C-CCCCcEEEcCC
Q 037291 249 RMKVLIVLDDVNEVG---------------QLEGLIGELDQFGP----GSRIVVTTRDKGVLEKF--R-GEEKKIHRVNG 306 (349)
Q Consensus 249 ~k~~LlVlDdv~~~~---------------~~~~l~~~~~~~~~----gs~IIiTtR~~~~~~~~--~-~~~~~~~~l~~ 306 (349)
.++++|+||+++... ...+++..+..... +--||=.|..++++... . +.-++.+.|++
T Consensus 763 A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~ 842 (953)
T KOG0736|consen 763 AAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGP 842 (953)
T ss_pred cCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecC
Confidence 689999999997432 23444444443332 33445445444443321 1 12457777877
Q ss_pred CCHHHHH
Q 037291 307 LEFEEAF 313 (349)
Q Consensus 307 L~~~ea~ 313 (349)
=+.+++.
T Consensus 843 ~~d~esk 849 (953)
T KOG0736|consen 843 NEDAESK 849 (953)
T ss_pred CccHHHH
Confidence 7666654
No 287
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.83 E-value=0.0044 Score=61.05 Aligned_cols=27 Identities=41% Similarity=0.479 Sum_probs=24.0
Q ss_pred CCeeEEEEeccCccchHHHHHHHHHhh
Q 037291 167 DTVQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 167 ~~~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
..-+++.++|++|.||||||.-++++.
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqa 350 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQA 350 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhc
Confidence 457899999999999999999998864
No 288
>PRK03839 putative kinase; Provisional
Probab=96.82 E-value=0.00099 Score=55.72 Aligned_cols=24 Identities=33% Similarity=0.632 Sum_probs=21.6
Q ss_pred EEEEeccCccchHHHHHHHHHhhh
Q 037291 171 IVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 171 ~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
.|.|.|++|+||||+++.+++++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999863
No 289
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.80 E-value=0.0013 Score=56.34 Aligned_cols=28 Identities=43% Similarity=0.603 Sum_probs=24.4
Q ss_pred CCeeEEEEeccCccchHHHHHHHHHhhh
Q 037291 167 DTVQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 167 ~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
....+|+|.|++|+|||||++.++..+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3468999999999999999999998654
No 290
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.79 E-value=0.0012 Score=59.09 Aligned_cols=118 Identities=17% Similarity=0.161 Sum_probs=67.8
Q ss_pred hhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHHHhhccccc
Q 037291 154 IEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLE 233 (349)
Q Consensus 154 ~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~ 233 (349)
.+.+.++|... -.....+.|.|+.|+||||++..+...+...-...+-+.+..+..- .........
T Consensus 113 ~~~~~~~l~~~-v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l-------------~~~~~~~~~ 178 (270)
T PF00437_consen 113 PEEIAEFLRSA-VRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRL-------------PGPNQIQIQ 178 (270)
T ss_dssp HHHHHHHHHHC-HHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S---------------SCSSEEEEE
T ss_pred HHHHHHHHhhc-cccceEEEEECCCccccchHHHHHhhhccccccceEEeccccceee-------------cccceEEEE
Confidence 34455555432 1235888999999999999999999877655233444543333211 000000000
Q ss_pred --ccCCCchHHHHHHhCCCeEEEEEeCCCChhHHHHHhcccCCCCCCcEE-EEEeCChh
Q 037291 234 --VAGANIPHFTKERVWRMKVLIVLDDVNEVGQLEGLIGELDQFGPGSRI-VVTTRDKG 289 (349)
Q Consensus 234 --~~~~~~~~~~~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~I-IiTtR~~~ 289 (349)
.........++..|+..+=.++++++.+.+.+..+... ..|..+ +.|.....
T Consensus 179 ~~~~~~~~~~~l~~~LR~~pD~iiigEiR~~e~~~~~~a~----~tGh~~~~tT~Ha~s 233 (270)
T PF00437_consen 179 TRRDEISYEDLLKSALRQDPDVIIIGEIRDPEAAEAIQAA----NTGHLGSLTTLHANS 233 (270)
T ss_dssp EETTTBSHHHHHHHHTTS--SEEEESCE-SCHHHHHHHHH----HTT-EEEEEEEE-SS
T ss_pred eecCcccHHHHHHHHhcCCCCcccccccCCHhHHHHHHhh----ccCCceeeeeeecCC
Confidence 11245557788888888889999999888777664333 356677 66655443
No 291
>PRK04040 adenylate kinase; Provisional
Probab=96.79 E-value=0.0014 Score=55.28 Aligned_cols=25 Identities=28% Similarity=0.587 Sum_probs=22.9
Q ss_pred eEEEEeccCccchHHHHHHHHHhhh
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
.+|+|+|++|+||||+++.+.+++.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5789999999999999999999874
No 292
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.79 E-value=0.0026 Score=53.01 Aligned_cols=94 Identities=22% Similarity=0.238 Sum_probs=48.3
Q ss_pred EEEEeccCccchHHHHHHHHHhhh-cCCcce-EEEEeccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHHHhC
Q 037291 171 IVGIWGMGGIGKTTLAEAIFDQFT-GEFDGS-CFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERVW 248 (349)
Q Consensus 171 ~i~I~G~~GiGKTtLa~~~~~~~~-~~f~~~-~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~ 248 (349)
.|.|.|++|.||||+|+.+.+++. .+.+.. +|...+.. .. .+...+-..+.... -.++......+.+++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~----~t---~lg~~~k~~i~~g~-lv~d~i~~~~v~~rl~ 73 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAE----RT---ELGEEIKKYIDKGE-LVPDEIVNGLVKERLD 73 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhcc----CC---hHHHHHHHHHHcCC-ccchHHHHHHHHHHHH
Confidence 367999999999999999999841 122211 12211111 11 12222222222222 2222333344555553
Q ss_pred C---CeEEEEEeCC-CChhHHHHHhcccC
Q 037291 249 R---MKVLIVLDDV-NEVGQLEGLIGELD 273 (349)
Q Consensus 249 ~---k~~LlVlDdv-~~~~~~~~l~~~~~ 273 (349)
. +. .+|+|+. ....+++.+...+.
T Consensus 74 ~~d~~~-~~I~dg~PR~~~qa~~l~r~l~ 101 (178)
T COG0563 74 EADCKA-GFILDGFPRTLCQARALKRLLK 101 (178)
T ss_pred hhcccC-eEEEeCCCCcHHHHHHHHHHHH
Confidence 3 24 8999999 45566665554443
No 293
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.79 E-value=0.0012 Score=54.70 Aligned_cols=26 Identities=19% Similarity=0.318 Sum_probs=23.2
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
...|.|+|++|+||||+|+.+++.+.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999999863
No 294
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.78 E-value=0.0028 Score=54.72 Aligned_cols=49 Identities=16% Similarity=0.291 Sum_probs=35.6
Q ss_pred hhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEE
Q 037291 155 EQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMS 204 (349)
Q Consensus 155 ~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 204 (349)
..|..+|... -....++.|+|.+|+||||+|.+++......-..++|+.
T Consensus 6 ~~LD~~l~GG-i~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 6 KGLDELLGGG-VERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred hHHHHHhcCC-ccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3455555432 234688999999999999999999987755545567775
No 295
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=96.77 E-value=0.0041 Score=57.80 Aligned_cols=102 Identities=17% Similarity=0.231 Sum_probs=59.5
Q ss_pred CCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHHH
Q 037291 167 DTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKER 246 (349)
Q Consensus 167 ~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~ 246 (349)
..++-+-|||..|.|||.|+-.+|+.+...-.. ...+..++..+-+.+.... ...+.+ ..+.+.
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~-------------R~HFh~Fm~~vh~~l~~~~--~~~~~l-~~va~~ 123 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKR-------------RVHFHEFMLDVHSRLHQLR--GQDDPL-PQVADE 123 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCccccc-------------cccccHHHHHHHHHHHHHh--CCCccH-HHHHHH
Confidence 346778899999999999999999976432111 1122234444444433322 111223 555666
Q ss_pred hCCCeEEEEEeCCC--Ch---hHHHHHhcccCCCCCCcEEEEEeC
Q 037291 247 VWRMKVLIVLDDVN--EV---GQLEGLIGELDQFGPGSRIVVTTR 286 (349)
Q Consensus 247 l~~k~~LlVlDdv~--~~---~~~~~l~~~~~~~~~gs~IIiTtR 286 (349)
+.++..||.||++. |. ..+..++..+- ..|..+|.||.
T Consensus 124 l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~--~~gvvlVaTSN 166 (362)
T PF03969_consen 124 LAKESRLLCFDEFQVTDIADAMILKRLFEALF--KRGVVLVATSN 166 (362)
T ss_pred HHhcCCEEEEeeeeccchhHHHHHHHHHHHHH--HCCCEEEecCC
Confidence 77778899999873 33 33455554432 45665555554
No 296
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.76 E-value=0.0099 Score=49.52 Aligned_cols=107 Identities=17% Similarity=0.136 Sum_probs=55.9
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEe--ccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHH
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSD--VRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKE 245 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~--~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~ 245 (349)
...+++|.|+.|.|||||++.++..... ..+.+++.. +.-..+ ... ++.- +...-.+.+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~q-~~~--------LSgG---------q~qrv~lar 84 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLIP-NGDNDEWDGITPVYKPQ-YID--------LSGG---------ELQRVAIAA 84 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCC-CCcEEEECCEEEEEEcc-cCC--------CCHH---------HHHHHHHHH
Confidence 3478999999999999999998875432 233333321 111111 110 0000 011123344
Q ss_pred HhCCCeEEEEEeCCC---ChhHHHHHhcccCCC-CC-CcEEEEEeCChhHHHh
Q 037291 246 RVWRMKVLIVLDDVN---EVGQLEGLIGELDQF-GP-GSRIVVTTRDKGVLEK 293 (349)
Q Consensus 246 ~l~~k~~LlVlDdv~---~~~~~~~l~~~~~~~-~~-gs~IIiTtR~~~~~~~ 293 (349)
.+..++-+++||+-. +....+.+...+... .. +..||++|.+......
T Consensus 85 al~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~ 137 (177)
T cd03222 85 ALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDY 137 (177)
T ss_pred HHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHH
Confidence 555677899999873 222222222222111 12 2567888887766554
No 297
>PRK06547 hypothetical protein; Provisional
Probab=96.76 E-value=0.0018 Score=53.65 Aligned_cols=27 Identities=41% Similarity=0.351 Sum_probs=24.1
Q ss_pred CCeeEEEEeccCccchHHHHHHHHHhh
Q 037291 167 DTVQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 167 ~~~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
....+|+|.|++|+||||+|+.+++..
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999999999864
No 298
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.76 E-value=0.0009 Score=54.24 Aligned_cols=20 Identities=35% Similarity=0.516 Sum_probs=18.6
Q ss_pred EeccCccchHHHHHHHHHhh
Q 037291 174 IWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 174 I~G~~GiGKTtLa~~~~~~~ 193 (349)
|.|++|+||||+|+.+++++
T Consensus 1 i~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc
Confidence 68999999999999999976
No 299
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.75 E-value=0.0062 Score=54.81 Aligned_cols=28 Identities=25% Similarity=0.377 Sum_probs=24.3
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhc
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTG 195 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~ 195 (349)
..++++|+|++|+||||++..++..+..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~ 220 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVL 220 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3579999999999999999999987654
No 300
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.75 E-value=0.0012 Score=55.33 Aligned_cols=26 Identities=35% Similarity=0.487 Sum_probs=23.2
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
..++|+|.|++|+||||+|+.+++.+
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999999765
No 301
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.011 Score=54.37 Aligned_cols=50 Identities=24% Similarity=0.315 Sum_probs=36.2
Q ss_pred CCcccccchhhhHHHhhhhc---------CCCCeeEEEEeccCccchHHHHHHHHHhhh
Q 037291 145 NGLVGLNSRIEQIKPFLCMD---------LSDTVQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~---------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
+.+.|.++..+-|++..... -....+-|.++|++|.|||-||++++..-.
T Consensus 212 ~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~ 270 (491)
T KOG0738|consen 212 DDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECG 270 (491)
T ss_pred HhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhc
Confidence 45677777666666543221 123467888999999999999999998764
No 302
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.73 E-value=0.0085 Score=49.74 Aligned_cols=26 Identities=38% Similarity=0.583 Sum_probs=22.6
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
...+++|.|+.|.|||||++.++-..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34789999999999999999998754
No 303
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=0.01 Score=58.86 Aligned_cols=172 Identities=15% Similarity=0.177 Sum_probs=91.8
Q ss_pred CcccccchhhhHHHhhhhcCC------CCeeEEEEeccCccchHHHHHHHHHhhhcCC-cceE--EEEeccccccCCCCh
Q 037291 146 GLVGLNSRIEQIKPFLCMDLS------DTVQIVGIWGMGGIGKTTLAEAIFDQFTGEF-DGSC--FMSDVRRNSETGGGL 216 (349)
Q Consensus 146 ~~vGr~~~~~~l~~~L~~~~~------~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f-~~~~--~~~~~~~~~~~~~~~ 216 (349)
...+++..+..+.+.|..... ....++.++|.+|+||||+++.++..+.-++ ..-| ++... .+.
T Consensus 402 ~~~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s-------~~~ 474 (953)
T KOG0736|consen 402 SPPGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAES-------ASH 474 (953)
T ss_pred CCccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcc-------cch
Confidence 345666667777777765411 2357888999999999999999999875542 2111 11100 000
Q ss_pred HHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCC-------C---hh---HHHHHhc-c-cCCCCCCcEE
Q 037291 217 EHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVN-------E---VG---QLEGLIG-E-LDQFGPGSRI 281 (349)
Q Consensus 217 ~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~-------~---~~---~~~~l~~-~-~~~~~~gs~I 281 (349)
.. ..+...+.+.-...+.+|.|-|++ . .. .++.++. . +...+++..+
T Consensus 475 ~e------------------tkl~~~f~~a~~~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~iv 536 (953)
T KOG0736|consen 475 TE------------------TKLQAIFSRARRCSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIV 536 (953)
T ss_pred hH------------------HHHHHHHHHHhhcCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEE
Confidence 00 111122222223355666665553 1 11 1222222 1 2222344445
Q ss_pred EEEeCC-hhHHHhcCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCc
Q 037291 282 VVTTRD-KGVLEKFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNP 345 (349)
Q Consensus 282 IiTtR~-~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~P 345 (349)
+.|+.+ +++.......-.+.++++.|+++|-.++|+.++-... -+.....+.++++|.|.-
T Consensus 537 v~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~---~n~~v~~k~~a~~t~gfs 598 (953)
T KOG0736|consen 537 VATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLP---LNQDVNLKQLARKTSGFS 598 (953)
T ss_pred EEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccc---cchHHHHHHHHHhcCCCC
Confidence 555443 3332222222346789999999999999998873322 122233466777777753
No 304
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.73 E-value=0.015 Score=53.91 Aligned_cols=37 Identities=24% Similarity=0.295 Sum_probs=28.4
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEE
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMS 204 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 204 (349)
..+++.|+|+.|+||||++..++......-..+.++.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIt 241 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFIT 241 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4689999999999999999999887644433445554
No 305
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.72 E-value=0.0021 Score=55.99 Aligned_cols=31 Identities=39% Similarity=0.475 Sum_probs=26.4
Q ss_pred CCCeeEEEEeccCccchHHHHHHHHHhhhcC
Q 037291 166 SDTVQIVGIWGMGGIGKTTLAEAIFDQFTGE 196 (349)
Q Consensus 166 ~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 196 (349)
.....+++|.|++|.|||||++.+...+...
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 3467899999999999999999999876543
No 306
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.72 E-value=0.01 Score=51.98 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=20.5
Q ss_pred EEEEeccCccchHHHHHHHHHhhh
Q 037291 171 IVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 171 ~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
+..|+|++|+|||+||..++..+.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va 26 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMA 26 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999987653
No 307
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.70 E-value=0.0054 Score=50.92 Aligned_cols=26 Identities=35% Similarity=0.469 Sum_probs=22.6
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
...+++|.|+.|.|||||.+.++-..
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 34789999999999999999998754
No 308
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.70 E-value=0.0079 Score=51.83 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.6
Q ss_pred EEEEeccCccchHHHHHHHHHhh
Q 037291 171 IVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 171 ~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
.|.|.|++|+||||+|+.++.++
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998875
No 309
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.70 E-value=0.0015 Score=54.39 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=22.5
Q ss_pred eEEEEeccCccchHHHHHHHHHhhh
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
++|.+.|++|+||||+|+.+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5789999999999999999988753
No 310
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.70 E-value=0.013 Score=50.37 Aligned_cols=23 Identities=22% Similarity=0.180 Sum_probs=20.9
Q ss_pred eeEEEEeccCccchHHHHHHHHH
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFD 191 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~ 191 (349)
.+.+.|+|+.|.|||||.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48889999999999999999874
No 311
>PRK14529 adenylate kinase; Provisional
Probab=96.69 E-value=0.0065 Score=52.47 Aligned_cols=92 Identities=20% Similarity=0.154 Sum_probs=50.2
Q ss_pred EEEeccCccchHHHHHHHHHhhhcCC-cceEEEEeccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHHHhCCC
Q 037291 172 VGIWGMGGIGKTTLAEAIFDQFTGEF-DGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERVWRM 250 (349)
Q Consensus 172 i~I~G~~GiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k 250 (349)
|.|.|++|+||||+|+.++.++.-.+ ...-.+. +.......+....+. +.......+++.+...+.+++...
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr---~~i~~~t~lg~~i~~----~i~~G~lvpdei~~~lv~~~l~~~ 75 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFR---EHIGGGTELGKKAKE----YIDRGDLVPDDITIPMILETLKQD 75 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCcccchhhh---hhccCCChHHHHHHH----HHhccCcchHHHHHHHHHHHHhcc
Confidence 67899999999999999998764221 1111111 111101222222222 222222233444556666666432
Q ss_pred -eEEEEEeCC-CChhHHHHHhc
Q 037291 251 -KVLIVLDDV-NEVGQLEGLIG 270 (349)
Q Consensus 251 -~~LlVlDdv-~~~~~~~~l~~ 270 (349)
.--+|||++ .+..|.+.|..
T Consensus 76 ~~~g~iLDGfPRt~~Qa~~l~~ 97 (223)
T PRK14529 76 GKNGWLLDGFPRNKVQAEKLWE 97 (223)
T ss_pred CCCcEEEeCCCCCHHHHHHHHH
Confidence 345899999 56677665543
No 312
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.69 E-value=0.017 Score=51.65 Aligned_cols=37 Identities=16% Similarity=0.066 Sum_probs=28.8
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcC-CcceEEEE
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGE-FDGSCFMS 204 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 204 (349)
...++.|.|.+|+||||++.+++...... -..++|+.
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS 66 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS 66 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE
Confidence 34688899999999999999998876444 34566765
No 313
>PRK00625 shikimate kinase; Provisional
Probab=96.69 E-value=0.0014 Score=54.43 Aligned_cols=24 Identities=21% Similarity=0.409 Sum_probs=21.5
Q ss_pred EEEEeccCccchHHHHHHHHHhhh
Q 037291 171 IVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 171 ~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
.|.|+||+|+||||+++.+++++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999998764
No 314
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.68 E-value=0.0026 Score=51.94 Aligned_cols=36 Identities=19% Similarity=0.295 Sum_probs=29.8
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEE
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFM 203 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 203 (349)
...+|.++|++|.||||||.++.+++.........+
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~L 57 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLL 57 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 467999999999999999999999987665544444
No 315
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.68 E-value=0.0049 Score=56.15 Aligned_cols=50 Identities=22% Similarity=0.190 Sum_probs=35.3
Q ss_pred hhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEE
Q 037291 155 EQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMS 204 (349)
Q Consensus 155 ~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 204 (349)
..|..+|....=...+++.|+|++|+||||||.+++......-..++|+.
T Consensus 41 ~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId 90 (321)
T TIGR02012 41 LSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 90 (321)
T ss_pred HHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEc
Confidence 34445554121334689999999999999999999887655545566775
No 316
>PRK15115 response regulator GlrR; Provisional
Probab=96.67 E-value=0.045 Score=52.66 Aligned_cols=47 Identities=26% Similarity=0.246 Sum_probs=33.5
Q ss_pred CCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHh
Q 037291 145 NGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
..++|....+..+.+....- ......+.|+|.+|+|||++|+.+.+.
T Consensus 134 ~~lig~s~~~~~~~~~~~~~-a~~~~~vli~Ge~GtGk~~lA~~ih~~ 180 (444)
T PRK15115 134 EAIVTRSPLMLRLLEQARMV-AQSDVSVLINGQSGTGKEILAQAIHNA 180 (444)
T ss_pred hcccccCHHHHHHHHHHHhh-ccCCCeEEEEcCCcchHHHHHHHHHHh
Confidence 35788877776665554433 223345679999999999999988764
No 317
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.67 E-value=0.0052 Score=56.05 Aligned_cols=50 Identities=22% Similarity=0.165 Sum_probs=35.7
Q ss_pred hhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEE
Q 037291 155 EQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMS 204 (349)
Q Consensus 155 ~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 204 (349)
..|..+|....=...+++-|+|++|+||||||.+++......-..++|+.
T Consensus 41 ~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId 90 (325)
T cd00983 41 LSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFID 90 (325)
T ss_pred HHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 34555554121234678899999999999999999887655556677776
No 318
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=96.66 E-value=0.017 Score=58.37 Aligned_cols=49 Identities=20% Similarity=0.274 Sum_probs=37.5
Q ss_pred CCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHh
Q 037291 143 SSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 143 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
..+.++|....+.++.+.+..- ......|.|+|..|+||+++|+.+.+.
T Consensus 323 ~~~~l~g~s~~~~~~~~~~~~~-a~~~~pvli~Ge~GtGK~~~A~~ih~~ 371 (638)
T PRK11388 323 TFDHMPQDSPQMRRLIHFGRQA-AKSSFPVLLCGEEGVGKALLAQAIHNE 371 (638)
T ss_pred cccceEECCHHHHHHHHHHHHH-hCcCCCEEEECCCCcCHHHHHHHHHHh
Confidence 3456899998888887777654 222344679999999999999999764
No 319
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.65 E-value=0.016 Score=51.11 Aligned_cols=25 Identities=36% Similarity=0.662 Sum_probs=22.3
Q ss_pred eeEEEEeccCccchHHHHHHHHHhh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
..+++|.|+.|+|||||++.++...
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999999999999998754
No 320
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.65 E-value=0.019 Score=48.87 Aligned_cols=23 Identities=26% Similarity=0.117 Sum_probs=21.0
Q ss_pred eEEEEeccCccchHHHHHHHHHh
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
++++|.|+.|.|||||.+.+.-.
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 78999999999999999998754
No 321
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.63 E-value=0.0023 Score=53.48 Aligned_cols=24 Identities=46% Similarity=0.689 Sum_probs=21.8
Q ss_pred EEEEeccCccchHHHHHHHHHhhh
Q 037291 171 IVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 171 ~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
+|+|.|.+|+||||||+.+...+.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~ 24 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999998764
No 322
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.61 E-value=0.0016 Score=53.83 Aligned_cols=24 Identities=33% Similarity=0.537 Sum_probs=20.7
Q ss_pred EEEeccCccchHHHHHHHHHhhhc
Q 037291 172 VGIWGMGGIGKTTLAEAIFDQFTG 195 (349)
Q Consensus 172 i~I~G~~GiGKTtLa~~~~~~~~~ 195 (349)
|.|+|.+|+|||||++.+++.++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 679999999999999999998754
No 323
>CHL00206 ycf2 Ycf2; Provisional
Probab=96.61 E-value=0.012 Score=64.07 Aligned_cols=26 Identities=15% Similarity=0.171 Sum_probs=22.8
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
..+-|.++|++|+|||.||++++...
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es 1654 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNS 1654 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhc
Confidence 35678899999999999999999864
No 324
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.61 E-value=0.0032 Score=52.39 Aligned_cols=27 Identities=33% Similarity=0.441 Sum_probs=24.1
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhhc
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFTG 195 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~~ 195 (349)
..+|+|.|++|+||||+|+.++..+..
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999998754
No 325
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.58 E-value=0.0076 Score=50.82 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=20.2
Q ss_pred EEEeccCccchHHHHHHHHHhh
Q 037291 172 VGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 172 i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
|.|.|++|+||||+|+.+++++
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6899999999999999999874
No 326
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.018 Score=58.96 Aligned_cols=105 Identities=18% Similarity=0.256 Sum_probs=64.9
Q ss_pred CCcccccchhhhHHHhhhhcC---CC--CeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHH
Q 037291 145 NGLVGLNSRIEQIKPFLCMDL---SD--TVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHL 219 (349)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~~---~~--~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 219 (349)
..++|-++.+..+.+.+...+ .+ ..-.+.+.|+.|+|||-||++++.-+....+.-+-+. .+ ..
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriD----ms-------e~ 630 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLD----MS-------EF 630 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEec----hh-------hh
Confidence 345666777777766665431 11 3456678899999999999999998866555544444 22 22
Q ss_pred HHHHHHHhhcccccccCCCchHHHHHHhCCCeE-EEEEeCCCCh
Q 037291 220 QKEMLSTILSEKLEVAGANIPHFTKERVWRMKV-LIVLDDVNEV 262 (349)
Q Consensus 220 ~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~-LlVlDdv~~~ 262 (349)
+. .+++.+..+..-.......+.+.++.+++ ++.||||+..
T Consensus 631 ~e--vskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkA 672 (898)
T KOG1051|consen 631 QE--VSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKA 672 (898)
T ss_pred hh--hhhccCCCcccccchhHHHHHHHHhcCCceEEEEechhhc
Confidence 22 44443433333222223677888888775 5668999743
No 327
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.58 E-value=0.015 Score=46.96 Aligned_cols=24 Identities=29% Similarity=0.567 Sum_probs=21.5
Q ss_pred EEEEeccCccchHHHHHHHHHhhh
Q 037291 171 IVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 171 ~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
++.|+|.+|+||||||+.+...+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999998764
No 328
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.57 E-value=0.0034 Score=53.92 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=20.0
Q ss_pred EEEeccCccchHHHHHHHHHhh
Q 037291 172 VGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 172 i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
|.|.|++|+||||+|+.++.++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6789999999999999998765
No 329
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.56 E-value=0.019 Score=54.72 Aligned_cols=36 Identities=19% Similarity=0.296 Sum_probs=27.2
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhh--cCCcceEEEE
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFT--GEFDGSCFMS 204 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~--~~f~~~~~~~ 204 (349)
.+++.++|++|+||||++..++..+. ..-..+.++.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~ 258 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALIT 258 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 46899999999999999999987765 3333455554
No 330
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.56 E-value=0.0019 Score=51.97 Aligned_cols=24 Identities=33% Similarity=0.599 Sum_probs=21.7
Q ss_pred EEEEeccCccchHHHHHHHHHhhh
Q 037291 171 IVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 171 ~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
+|.|.|++|+||||+|+.+++++.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC
Confidence 578999999999999999999763
No 331
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.56 E-value=0.0036 Score=50.03 Aligned_cols=35 Identities=20% Similarity=0.351 Sum_probs=26.5
Q ss_pred eEEEEeccCccchHHHHHHHHHhhhcC-CcceEEEE
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQFTGE-FDGSCFMS 204 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 204 (349)
++|.|+|..|+|||||++.+++.+..+ +...++..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~ 36 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKH 36 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEE
Confidence 478999999999999999999988644 55444444
No 332
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.55 E-value=0.0021 Score=57.47 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=21.3
Q ss_pred eEEEEeccCccchHHHHHHHHHhhh
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
+-+.++|++|+|||++++.+.....
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l~ 58 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSLD 58 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCST
T ss_pred CcEEEECCCCCchhHHHHhhhccCC
Confidence 5667999999999999999887643
No 333
>PRK05439 pantothenate kinase; Provisional
Probab=96.55 E-value=0.0031 Score=57.16 Aligned_cols=39 Identities=26% Similarity=0.343 Sum_probs=29.1
Q ss_pred HHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhc
Q 037291 157 IKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTG 195 (349)
Q Consensus 157 l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~ 195 (349)
+..+|........-+|+|.|.+|+||||+|+.+...+..
T Consensus 74 ~~~fl~~~~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 74 LEQFLGKNGQKVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred HHHHhcccCCCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 334444332456789999999999999999999886643
No 334
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.55 E-value=0.0056 Score=53.44 Aligned_cols=40 Identities=25% Similarity=0.444 Sum_probs=28.6
Q ss_pred hHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcC
Q 037291 156 QIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGE 196 (349)
Q Consensus 156 ~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 196 (349)
++.+.+... .....+|+|+|+||.|||||...+...++..
T Consensus 17 ~ll~~l~~~-~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~ 56 (266)
T PF03308_consen 17 ELLKRLYPH-TGRAHVIGITGPPGAGKSTLIDALIRELRER 56 (266)
T ss_dssp HHHHHHGGG-TT-SEEEEEEE-TTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhh-cCCceEEEeeCCCCCcHHHHHHHHHHHHhhc
Confidence 344444433 4467899999999999999999999876544
No 335
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=96.54 E-value=0.0038 Score=62.17 Aligned_cols=58 Identities=22% Similarity=0.322 Sum_probs=43.7
Q ss_pred CCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcC-CcceEEEEec
Q 037291 144 SNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGE-FDGSCFMSDV 206 (349)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~ 206 (349)
...++|.+..++.+...+... +.+.++|++|+||||+|+.+++.+... |...+++.|.
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~-----~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~n~ 75 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQK-----RNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYPNP 75 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcC-----CCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEeCC
Confidence 456889988888777777654 356699999999999999999987544 4555566533
No 336
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.54 E-value=0.004 Score=52.97 Aligned_cols=38 Identities=18% Similarity=0.233 Sum_probs=29.3
Q ss_pred CCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEE
Q 037291 167 DTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMS 204 (349)
Q Consensus 167 ~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 204 (349)
....+++|+|++|+||||||+.+...+...-...+++.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld 59 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLD 59 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEc
Confidence 34679999999999999999999997754433345553
No 337
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=96.54 E-value=0.0032 Score=62.72 Aligned_cols=75 Identities=17% Similarity=0.171 Sum_probs=54.0
Q ss_pred CCCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhc-CCcceEEEEeccccccCCCChHHHH
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTG-EFDGSCFMSDVRRNSETGGGLEHLQ 220 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~ 220 (349)
.....++|.+..++.|...+... +.+.|+|++|+||||+|+.+++.+.. .++...|+.+. ......++
T Consensus 28 ~~~~~vigq~~a~~~L~~~~~~~-----~~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~np------~~~~~~~~ 96 (637)
T PRK13765 28 RLIDQVIGQEHAVEVIKKAAKQR-----RHVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPNP------EDPNNPKI 96 (637)
T ss_pred ccHHHcCChHHHHHHHHHHHHhC-----CeEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeCC------CcchHHHH
Confidence 34467889888888887766654 46889999999999999999987643 34667777742 44555666
Q ss_pred HHHHHHh
Q 037291 221 KEMLSTI 227 (349)
Q Consensus 221 ~~ll~~~ 227 (349)
+.++...
T Consensus 97 ~~v~~~~ 103 (637)
T PRK13765 97 RTVPAGK 103 (637)
T ss_pred HHHHHhc
Confidence 6665443
No 338
>PRK13947 shikimate kinase; Provisional
Probab=96.54 E-value=0.0019 Score=53.35 Aligned_cols=24 Identities=25% Similarity=0.427 Sum_probs=21.7
Q ss_pred EEEEeccCccchHHHHHHHHHhhh
Q 037291 171 IVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 171 ~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
.|.|.|++|+||||+|+.+++.+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999874
No 339
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=96.52 E-value=0.031 Score=53.83 Aligned_cols=47 Identities=23% Similarity=0.278 Sum_probs=35.9
Q ss_pred CCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHh
Q 037291 145 NGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
..++|....++.+...+..- ......+.|+|..|+||+++|+.+...
T Consensus 139 ~~lig~s~~~~~l~~~i~~~-a~~~~~vli~Ge~GtGK~~lA~~ih~~ 185 (445)
T TIGR02915 139 RGLITSSPGMQKICRTIEKI-APSDITVLLLGESGTGKEVLARALHQL 185 (445)
T ss_pred cceeecCHHHHHHHHHHHHH-hCCCCCEEEECCCCcCHHHHHHHHHHh
Confidence 45899988888888777653 222344569999999999999998764
No 340
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=96.51 E-value=0.018 Score=49.17 Aligned_cols=21 Identities=43% Similarity=0.536 Sum_probs=19.4
Q ss_pred eEEEEeccCccchHHHHHHHH
Q 037291 170 QIVGIWGMGGIGKTTLAEAIF 190 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~ 190 (349)
.+++|.|+.|.|||||...++
T Consensus 23 g~~~i~G~NGsGKTTLl~ai~ 43 (204)
T cd03240 23 PLTLIVGQNGAGKTTIIEALK 43 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 489999999999999999985
No 341
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.51 E-value=0.045 Score=51.81 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=22.6
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
...+++++|+.|+||||++..++.+.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999888753
No 342
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.51 E-value=0.016 Score=48.91 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=22.0
Q ss_pred CeeEEEEeccCccchHHHHHHHHHh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
...+++|.|+.|.|||||++.++-.
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3478999999999999999999853
No 343
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.50 E-value=0.0068 Score=55.35 Aligned_cols=112 Identities=16% Similarity=0.132 Sum_probs=61.8
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHHHh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERV 247 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l 247 (349)
....++|+|+.|.|||||++.+...+.... ..+.+.+..+......+...+ .. .........-...+.+...+
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~~~~-~iv~ied~~El~~~~~~~~~l----~~--~~~~~~~~~~~~~~~l~~~L 215 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIPKDE-RIITIEDTREIFLPHPNYVHL----FY--SKGGQGLAKVTPKDLLQSCL 215 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCCccc-cEEEEcCccccCCCCCCEEEE----Ee--cCCCCCcCccCHHHHHHHHh
Confidence 347889999999999999999987664332 344444433322100000000 00 00000011123446677778
Q ss_pred CCCeEEEEEeCCCChhHHHHHhcccCCCCCCcE-EEEEeCChhH
Q 037291 248 WRMKVLIVLDDVNEVGQLEGLIGELDQFGPGSR-IVVTTRDKGV 290 (349)
Q Consensus 248 ~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~-IIiTtR~~~~ 290 (349)
+..+=.+++|.+...+.+.. +.... .|.. ++.|+...+.
T Consensus 216 r~~pd~ii~gE~r~~e~~~~-l~a~~---~g~~~~i~T~Ha~~~ 255 (308)
T TIGR02788 216 RMRPDRIILGELRGDEAFDF-IRAVN---TGHPGSITTLHAGSP 255 (308)
T ss_pred cCCCCeEEEeccCCHHHHHH-HHHHh---cCCCeEEEEEeCCCH
Confidence 88888999999987655543 33332 2332 4666665543
No 344
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.50 E-value=0.0032 Score=52.80 Aligned_cols=36 Identities=25% Similarity=0.412 Sum_probs=29.9
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEE
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMS 204 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 204 (349)
.+++.|+|++|+|||||++.++......|...+...
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceeec
Confidence 368899999999999999999998888886444443
No 345
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.50 E-value=0.0036 Score=49.33 Aligned_cols=25 Identities=32% Similarity=0.413 Sum_probs=22.8
Q ss_pred eeEEEEeccCccchHHHHHHHHHhh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
..+|.+.|.-|.||||+++.+++.+
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999875
No 346
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.50 E-value=0.0055 Score=51.56 Aligned_cols=91 Identities=15% Similarity=0.147 Sum_probs=51.4
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHHHhhccccc---ccCCCchHHHHH
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLE---VAGANIPHFTKE 245 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~---~~~~~~~~~~~~ 245 (349)
...++|.|+.|.|||||++.+...+... ...+.+.+..+... .. .... ++...... .......+.++.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~-~~~i~ied~~E~~~-~~------~~~~-~~~~~~~~~~~~~~~~~~~~l~~ 95 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPD-ERIITIEDTAELQL-PH------PNWV-RLVTRPGNVEGSGEVTMADLLRS 95 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEECCccccCC-CC------CCEE-EEEEecCCCCCCCccCHHHHHHH
Confidence 4788999999999999999998866433 23333332222111 00 0000 00000000 011234466667
Q ss_pred HhCCCeEEEEEeCCCChhHHHHH
Q 037291 246 RVWRMKVLIVLDDVNEVGQLEGL 268 (349)
Q Consensus 246 ~l~~k~~LlVlDdv~~~~~~~~l 268 (349)
.++..+=.++++.+.+.+.+..+
T Consensus 96 ~lR~~pd~i~igEir~~ea~~~~ 118 (186)
T cd01130 96 ALRMRPDRIIVGEVRGGEALDLL 118 (186)
T ss_pred HhccCCCEEEEEccCcHHHHHHH
Confidence 77778888999999887765543
No 347
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.50 E-value=0.0019 Score=54.96 Aligned_cols=23 Identities=57% Similarity=0.832 Sum_probs=21.0
Q ss_pred EEEEeccCccchHHHHHHHHHhh
Q 037291 171 IVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 171 ~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
+|+|.|++|+|||||++.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998865
No 348
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.49 E-value=0.0088 Score=53.18 Aligned_cols=38 Identities=26% Similarity=0.199 Sum_probs=34.1
Q ss_pred CCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEE
Q 037291 167 DTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMS 204 (349)
Q Consensus 167 ~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 204 (349)
...+++.|+|.+|+|||+++.++..........++|+.
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs 58 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS 58 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence 45689999999999999999999998888888888887
No 349
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.48 E-value=0.0068 Score=54.00 Aligned_cols=96 Identities=19% Similarity=0.133 Sum_probs=56.0
Q ss_pred HHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHHH-hh---cccc
Q 037291 157 IKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLST-IL---SEKL 232 (349)
Q Consensus 157 l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~-~~---~~~~ 232 (349)
|..+|... -...+++=|+|+.|.||||||.+++-.....-..++|++ ..+ ...+..+ .++... +. ....
T Consensus 49 LD~~LGGG-l~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fID----tE~-~l~p~r~-~~l~~~~~d~l~v~~~ 121 (279)
T COG0468 49 LDEALGGG-LPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFID----TEH-ALDPERA-KQLGVDLLDNLLVSQP 121 (279)
T ss_pred HHHHhcCC-cccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEe----CCC-CCCHHHH-HHHHHhhhcceeEecC
Confidence 34444422 345689999999999999999999887766666889998 332 3444443 333333 21 1111
Q ss_pred cccC--CCchHHHHHHhCCCeEEEEEeCC
Q 037291 233 EVAG--ANIPHFTKERVWRMKVLIVLDDV 259 (349)
Q Consensus 233 ~~~~--~~~~~~~~~~l~~k~~LlVlDdv 259 (349)
.... ..+...+......+--|+|+|.+
T Consensus 122 ~~~e~q~~i~~~~~~~~~~~i~LvVVDSv 150 (279)
T COG0468 122 DTGEQQLEIAEKLARSGAEKIDLLVVDSV 150 (279)
T ss_pred CCHHHHHHHHHHHHHhccCCCCEEEEecC
Confidence 1111 12222333333334679999998
No 350
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=96.46 E-value=0.0019 Score=54.18 Aligned_cols=23 Identities=48% Similarity=0.603 Sum_probs=21.2
Q ss_pred EEEEeccCccchHHHHHHHHHhh
Q 037291 171 IVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 171 ~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
+|+|.|.+|+||||||+.++..+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999875
No 351
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.46 E-value=0.019 Score=49.10 Aligned_cols=115 Identities=14% Similarity=0.131 Sum_probs=59.1
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcC---Cc-c-eEEEEeccccccCCCChHHHHHHHHHHhhcccccccCCCchHH
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGE---FD-G-SCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHF 242 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~---f~-~-~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~ 242 (349)
+..-..|.|++|+|||||.+.++.-++.. |. . ++.+..-.++.....+..+ ..+..++...+.-...+.+-..
T Consensus 136 g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq--~~~g~R~dVld~cpk~~gmmma 213 (308)
T COG3854 136 GWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQ--HGRGRRMDVLDPCPKAEGMMMA 213 (308)
T ss_pred CceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCch--hhhhhhhhhcccchHHHHHHHH
Confidence 55657789999999999999999865433 32 2 2223211111110001111 1111111111111111222222
Q ss_pred HHHHhCCCeEEEEEeCCCChhHHHHHhcccCCCCCCcEEEEEeCChhH
Q 037291 243 TKERVWRMKVLIVLDDVNEVGQLEGLIGELDQFGPGSRIVVTTRDKGV 290 (349)
Q Consensus 243 ~~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IIiTtR~~~~ 290 (349)
++ ...+=++|+|.+-..++..++...+ ..|.++|.|..-..+
T Consensus 214 Ir---sm~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaHG~~i 255 (308)
T COG3854 214 IR---SMSPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAHGNGI 255 (308)
T ss_pred HH---hcCCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeeccccH
Confidence 22 3357799999998777666665554 467788877764444
No 352
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=96.45 E-value=0.0079 Score=56.90 Aligned_cols=87 Identities=20% Similarity=0.241 Sum_probs=48.4
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHHHhhcccccc---cCCC------
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEV---AGAN------ 238 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~---~~~~------ 238 (349)
....++|.|..|+|||||++.++..... +..++. .+++- ......+...++..-....... ..+.
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~~~--dv~Vi~-lIGER---~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~ 234 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGTTA--DVIVVG-LVGER---GREVKEFIEEILGEEGRARSVVVAAPADTSPLMRL 234 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCCCC--CEEEEE-EEcCC---hHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHH
Confidence 4578999999999999999999864332 344443 33332 3344445554433311110000 1111
Q ss_pred ----chHHHHHHh--CCCeEEEEEeCCC
Q 037291 239 ----IPHFTKERV--WRMKVLIVLDDVN 260 (349)
Q Consensus 239 ----~~~~~~~~l--~~k~~LlVlDdv~ 260 (349)
..-.+.+++ .++++||++||+.
T Consensus 235 ~a~~~A~tiAEyfrd~G~~VLl~~DslT 262 (444)
T PRK08972 235 KGCETATTIAEYFRDQGLNVLLLMDSLT 262 (444)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEcChH
Confidence 111233444 5789999999994
No 353
>PRK06217 hypothetical protein; Validated
Probab=96.44 E-value=0.0023 Score=53.75 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=21.6
Q ss_pred EEEEeccCccchHHHHHHHHHhhh
Q 037291 171 IVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 171 ~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
.|.|.|.+|+||||||+.+.+.+.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 488999999999999999998763
No 354
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.43 E-value=0.0021 Score=55.64 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=21.8
Q ss_pred EEEEeccCccchHHHHHHHHHhhh
Q 037291 171 IVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 171 ~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
+|+|.|.+|+||||||+.+...+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 489999999999999999998775
No 355
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.43 E-value=0.0026 Score=53.09 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=22.0
Q ss_pred eEEEEeccCccchHHHHHHHHHhhh
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
.+++|.|++|+|||||++.++..+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4688999999999999999988753
No 356
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.42 E-value=0.019 Score=52.51 Aligned_cols=29 Identities=21% Similarity=0.433 Sum_probs=25.6
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcC
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGE 196 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 196 (349)
...+++++|++|+||||++..++..++..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~ 141 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ 141 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 46899999999999999999999877644
No 357
>PRK15453 phosphoribulokinase; Provisional
Probab=96.42 E-value=0.0049 Score=54.72 Aligned_cols=29 Identities=28% Similarity=0.388 Sum_probs=25.0
Q ss_pred CCeeEEEEeccCccchHHHHHHHHHhhhc
Q 037291 167 DTVQIVGIWGMGGIGKTTLAEAIFDQFTG 195 (349)
Q Consensus 167 ~~~~~i~I~G~~GiGKTtLa~~~~~~~~~ 195 (349)
....+|+|.|.+|+||||+|+.+.+.+..
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~ 31 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRR 31 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 35689999999999999999999986653
No 358
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.42 E-value=0.0052 Score=59.76 Aligned_cols=50 Identities=14% Similarity=0.152 Sum_probs=37.4
Q ss_pred hhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEE
Q 037291 154 IEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMS 204 (349)
Q Consensus 154 ~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 204 (349)
+..+.++|... -....++.|.|++|+|||||+.+++.....+-..++|+.
T Consensus 249 i~~lD~~lgGG-~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s 298 (484)
T TIGR02655 249 VVRLDEMCGGG-FFKDSIILATGATGTGKTLLVSKFLENACANKERAILFA 298 (484)
T ss_pred hHhHHHHhcCC-ccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 44566666543 345688899999999999999999998765555667765
No 359
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.41 E-value=0.0054 Score=56.99 Aligned_cols=95 Identities=17% Similarity=0.159 Sum_probs=54.3
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhhcCCc---ceEEEEeccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHH
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFTGEFD---GSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKE 245 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~---~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~ 245 (349)
...|.|+|+.|+||||+++.++..+....+ .++.+.+.-+... ...... .....+ .............++.
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~--~~~~~~-~~~v~Q---~~v~~~~~~~~~~l~~ 207 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVY--DEIETI-SASVCQ---SEIPRHLNNFAAGVRN 207 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEec--cccccc-cceeee---eeccccccCHHHHHHH
Confidence 478999999999999999999987754332 2333332222110 000000 000000 0000011234567778
Q ss_pred HhCCCeEEEEEeCCCChhHHHHHh
Q 037291 246 RVWRMKVLIVLDDVNEVGQLEGLI 269 (349)
Q Consensus 246 ~l~~k~~LlVlDdv~~~~~~~~l~ 269 (349)
.++..+-.+++..+.+.+.....+
T Consensus 208 aLR~~Pd~i~vGEiRd~et~~~al 231 (358)
T TIGR02524 208 ALRRKPHAILVGEARDAETISAAL 231 (358)
T ss_pred HhccCCCEEeeeeeCCHHHHHHHH
Confidence 888889999999998877665443
No 360
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.41 E-value=0.0025 Score=51.11 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=21.1
Q ss_pred EEEEeccCccchHHHHHHHHHhh
Q 037291 171 IVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 171 ~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
+|.|.|++|+||||+|+.+...+
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999876
No 361
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.41 E-value=0.0024 Score=54.74 Aligned_cols=27 Identities=22% Similarity=0.354 Sum_probs=23.2
Q ss_pred CCCeeEEEEeccCccchHHHHHHHHHh
Q 037291 166 SDTVQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 166 ~~~~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
....+.+.|+|++|+|||||++.+.+.
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 446788899999999999999999754
No 362
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.41 E-value=0.0022 Score=51.77 Aligned_cols=23 Identities=30% Similarity=0.663 Sum_probs=20.4
Q ss_pred EEEEeccCccchHHHHHHHHHhh
Q 037291 171 IVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 171 ~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
++.|+|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 36799999999999999998864
No 363
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.40 E-value=0.0023 Score=50.98 Aligned_cols=25 Identities=28% Similarity=0.618 Sum_probs=21.4
Q ss_pred EEEeccCccchHHHHHHHHHhhhcC
Q 037291 172 VGIWGMGGIGKTTLAEAIFDQFTGE 196 (349)
Q Consensus 172 i~I~G~~GiGKTtLa~~~~~~~~~~ 196 (349)
++|+|++|+|||||++.+...+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCcc
Confidence 6899999999999999999865433
No 364
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.016 Score=53.55 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=22.7
Q ss_pred eeEEEEeccCccchHHHHHHHHHhh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
.+-|..+|++|.|||..|+.++.+-
T Consensus 384 fRNilfyGPPGTGKTm~ArelAr~S 408 (630)
T KOG0742|consen 384 FRNILFYGPPGTGKTMFARELARHS 408 (630)
T ss_pred hhheeeeCCCCCCchHHHHHHHhhc
Confidence 6789999999999999999999864
No 365
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.40 E-value=0.0058 Score=47.35 Aligned_cols=41 Identities=20% Similarity=0.298 Sum_probs=31.1
Q ss_pred hhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhh
Q 037291 153 RIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 153 ~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
-++.|...+....+..+-++.++|.+|+|||.+++.+++.+
T Consensus 37 v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 37 VVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 34455555555435567888999999999999999998863
No 366
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=96.40 E-value=0.042 Score=43.83 Aligned_cols=51 Identities=16% Similarity=0.071 Sum_probs=33.2
Q ss_pred HHHHHHHhhCceEEEEecCCCCCchhhHHHHHHHHHhhhhCCCeEEEEeeecC
Q 037291 14 DALLNAIQGSKISVVIFSKDYGSSKWCLNELVKILECKHTNRQIIIPVFYGVS 66 (349)
Q Consensus 14 ~~i~~ai~~s~~~ivv~S~~y~~S~~cl~El~~i~~~~~~~~~~vlPvfy~v~ 66 (349)
.++.++|+++++.+.|++-....+.+.. ++.+.+.... .+..++-|+=+.|
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~~-~l~~~l~~~~-~~k~~iivlNK~D 53 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRPP-DLERYVKEVD-PRKKNILLLNKAD 53 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCCH-HHHHHHHhcc-CCCcEEEEEechh
Confidence 5788999999999999997766665532 4555554331 2344555554444
No 367
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.39 E-value=0.013 Score=51.37 Aligned_cols=49 Identities=12% Similarity=0.096 Sum_probs=34.9
Q ss_pred hhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEE
Q 037291 155 EQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMS 204 (349)
Q Consensus 155 ~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 204 (349)
..|.++|..+ =....++.|.|++|+|||+||.++.......-..++|+.
T Consensus 8 ~~LD~~l~GG-~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 8 PGMDEILHGG-IPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred HhHHHHhcCC-CcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 3445555433 334688999999999999999998776434455677776
No 368
>PRK14526 adenylate kinase; Provisional
Probab=96.38 E-value=0.0062 Score=52.27 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=19.8
Q ss_pred EEEeccCccchHHHHHHHHHhh
Q 037291 172 VGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 172 i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
++|.|++|+||||+|+.++..+
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~ 24 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNEL 24 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999998764
No 369
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.38 E-value=0.0058 Score=54.33 Aligned_cols=37 Identities=16% Similarity=0.261 Sum_probs=29.5
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEE
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMS 204 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 204 (349)
...++.|.|++|+|||++|.+++......=..++|+.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3578899999999999999999876544445677776
No 370
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.0069 Score=53.94 Aligned_cols=30 Identities=30% Similarity=0.379 Sum_probs=26.0
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcCC
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGEF 197 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f 197 (349)
.+..++|||++|.|||-||+.++..+.-+|
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg~nf 194 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATMGVNF 194 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhcCCce
Confidence 357889999999999999999999876554
No 371
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.38 E-value=0.012 Score=56.87 Aligned_cols=29 Identities=24% Similarity=0.418 Sum_probs=24.5
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcC
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGE 196 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 196 (349)
...+++|+|++|+||||++..++..+...
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~ 377 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQ 377 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 35899999999999999999998876443
No 372
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.045 Score=54.16 Aligned_cols=129 Identities=23% Similarity=0.271 Sum_probs=72.2
Q ss_pred eEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHHHhCC
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERVWR 249 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~ 249 (349)
.-|.++|++|+|||-||-+++....- -|+. -.++ ++++...+. .++.+.+...+....
T Consensus 702 ~giLLyGppGcGKT~la~a~a~~~~~-----~fis--------vKGP-----ElL~KyIGa----SEq~vR~lF~rA~~a 759 (952)
T KOG0735|consen 702 TGILLYGPPGCGKTLLASAIASNSNL-----RFIS--------VKGP-----ELLSKYIGA----SEQNVRDLFERAQSA 759 (952)
T ss_pred cceEEECCCCCcHHHHHHHHHhhCCe-----eEEE--------ecCH-----HHHHHHhcc----cHHHHHHHHHHhhcc
Confidence 45789999999999999999875432 2333 1122 233333222 123444555566677
Q ss_pred CeEEEEEeCCCChh-------------HHHHHhcccCCC--CCCcEEEE-EeCChhHHHh-cC-CCCCcEEEcCCCCHHH
Q 037291 250 MKVLIVLDDVNEVG-------------QLEGLIGELDQF--GPGSRIVV-TTRDKGVLEK-FR-GEEKKIHRVNGLEFEE 311 (349)
Q Consensus 250 k~~LlVlDdv~~~~-------------~~~~l~~~~~~~--~~gs~IIi-TtR~~~~~~~-~~-~~~~~~~~l~~L~~~e 311 (349)
++++|+||+++... -.++++-.+... -.|.-|+. |||..-+-.. +. +..+..+.-+.-+..+
T Consensus 760 ~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~e 839 (952)
T KOG0735|consen 760 KPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPE 839 (952)
T ss_pred CCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHH
Confidence 99999999996431 345555554422 13555554 5554322111 11 1134455555566677
Q ss_pred HHHHHHhhh
Q 037291 312 AFEHFCNFA 320 (349)
Q Consensus 312 a~~Lf~~~a 320 (349)
-+++|....
T Consensus 840 Rl~il~~ls 848 (952)
T KOG0735|consen 840 RLEILQVLS 848 (952)
T ss_pred HHHHHHHHh
Confidence 777776544
No 373
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.37 E-value=0.013 Score=50.20 Aligned_cols=38 Identities=26% Similarity=0.434 Sum_probs=27.2
Q ss_pred EEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccc
Q 037291 171 IVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRR 208 (349)
Q Consensus 171 ~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~ 208 (349)
.|+|+|-||+||||+|..++.++...-...+.+.+..+
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDp 39 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADP 39 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCC
Confidence 58999999999999999977766554333445544433
No 374
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.37 E-value=0.013 Score=53.70 Aligned_cols=76 Identities=11% Similarity=0.176 Sum_probs=48.6
Q ss_pred chhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcC--CcceEEEEeccccccCCCChHHHHHHHHHHh
Q 037291 152 SRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGE--FDGSCFMSDVRRNSETGGGLEHLQKEMLSTI 227 (349)
Q Consensus 152 ~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~ 227 (349)
.-.+.|.+.+.........+|+|.|.=|+||||+.+.+.+.+... -...+..-+.+...........++..+..++
T Consensus 3 ~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~l 80 (325)
T PF07693_consen 3 PYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFDQL 80 (325)
T ss_pred HHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHHHHHH
Confidence 344566667766533678999999999999999999999988766 2233333344444432233445555555444
No 375
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.35 E-value=0.0042 Score=51.29 Aligned_cols=45 Identities=29% Similarity=0.327 Sum_probs=33.2
Q ss_pred cccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHh
Q 037291 147 LVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 147 ~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
+||.+..++++.+.+..-.... ..|.|+|..|+||+.+|+.+.+.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~-~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSD-LPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTST-S-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhCCC-CCEEEEcCCCCcHHHHHHHHHHh
Confidence 4788888888888777652333 55569999999999999999874
No 376
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.34 E-value=0.009 Score=53.04 Aligned_cols=41 Identities=27% Similarity=0.386 Sum_probs=31.2
Q ss_pred hHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCC
Q 037291 156 QIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEF 197 (349)
Q Consensus 156 ~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f 197 (349)
++...+... .+...+|+|+|.||+|||||...+..++..+=
T Consensus 39 ~ll~~l~p~-tG~a~viGITG~PGaGKSTli~~L~~~l~~~G 79 (323)
T COG1703 39 ELLRALYPR-TGNAHVIGITGVPGAGKSTLIEALGRELRERG 79 (323)
T ss_pred HHHHHHhhc-CCCCcEEEecCCCCCchHHHHHHHHHHHHHCC
Confidence 344444443 56678999999999999999999998775543
No 377
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.034 Score=49.20 Aligned_cols=52 Identities=33% Similarity=0.424 Sum_probs=38.2
Q ss_pred CCcccccchhhhHHHhhhhcC----------CCCeeEEEEeccCccchHHHHHHHHHhhhcC
Q 037291 145 NGLVGLNSRIEQIKPFLCMDL----------SDTVQIVGIWGMGGIGKTTLAEAIFDQFTGE 196 (349)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~~----------~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 196 (349)
..+=|.+..+++|.+...-.. -..+.-|.++|.+|.|||-||++++++.+.-
T Consensus 185 ~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSAT 246 (440)
T KOG0726|consen 185 ADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSAT 246 (440)
T ss_pred cccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchh
Confidence 345677888888887664331 1235667799999999999999999976433
No 378
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.34 E-value=0.0057 Score=50.54 Aligned_cols=29 Identities=24% Similarity=0.431 Sum_probs=25.4
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcC
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGE 196 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 196 (349)
..++++|+|..|+|||||++.+...+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhc
Confidence 46799999999999999999999887653
No 379
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.34 E-value=0.01 Score=59.90 Aligned_cols=24 Identities=33% Similarity=0.464 Sum_probs=21.3
Q ss_pred CeeEEEEeccCccchHHHHHHHHH
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFD 191 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~ 191 (349)
....|+|+|.+|+|||||++.+..
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 347899999999999999999875
No 380
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.33 E-value=0.02 Score=58.52 Aligned_cols=27 Identities=26% Similarity=0.435 Sum_probs=23.2
Q ss_pred eEEEEeccCccchHHHHHHHHHhhhcC
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQFTGE 196 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~~~~ 196 (349)
+++.|.|.+|.||||+++.+.+.+...
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~~ 395 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEAA 395 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhC
Confidence 578899999999999999998766543
No 381
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=96.32 E-value=0.016 Score=55.27 Aligned_cols=90 Identities=20% Similarity=0.275 Sum_probs=53.1
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHHHhhcccccc---c-CC------
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEV---A-GA------ 237 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~---~-~~------ 237 (349)
..+.++|.|.+|+|||||+..++.....+...++.+..+++- ......+...+...-....... . ++
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~~~~~v~V~~liGER---~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~ 219 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGER---TREGNDLYHEMKESGVLDKTALVFGQMNEPPGARL 219 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccC---cHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 457889999999999999999988765443333333434332 3445556555554321111000 1 11
Q ss_pred ---CchHHHHHHh---CCCeEEEEEeCCC
Q 037291 238 ---NIPHFTKERV---WRMKVLIVLDDVN 260 (349)
Q Consensus 238 ---~~~~~~~~~l---~~k~~LlVlDdv~ 260 (349)
...-.+.+++ .++++||++|++.
T Consensus 220 ~a~~~a~tiAEyfrd~~G~~VLll~DslT 248 (463)
T PRK09280 220 RVALTGLTMAEYFRDVEGQDVLLFIDNIF 248 (463)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEecchH
Confidence 1122344555 6789999999994
No 382
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.32 E-value=0.042 Score=48.11 Aligned_cols=51 Identities=22% Similarity=0.346 Sum_probs=33.4
Q ss_pred HHHHHHhCCCeEEEEEeCC----C--ChhHHHHHhcccCCCCCCcEEEEEeCChhHHHh
Q 037291 241 HFTKERVWRMKVLIVLDDV----N--EVGQLEGLIGELDQFGPGSRIVVTTRDKGVLEK 293 (349)
Q Consensus 241 ~~~~~~l~~k~~LlVlDdv----~--~~~~~~~l~~~~~~~~~gs~IIiTtR~~~~~~~ 293 (349)
-.+.+.|..++=||+||+= | ....+-.++..+.. .|..||++|.|-.....
T Consensus 148 V~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~--eg~tIl~vtHDL~~v~~ 204 (254)
T COG1121 148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ--EGKTVLMVTHDLGLVMA 204 (254)
T ss_pred HHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCcHHhHh
Confidence 3456677888999999964 2 22334445555443 38889999998765444
No 383
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.01 Score=57.94 Aligned_cols=131 Identities=18% Similarity=0.249 Sum_probs=75.1
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHHHh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERV 247 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l 247 (349)
..+-+.++|++|+|||-|+++++++.. ..+|..+.. ++++.+.++ ....+...+.+..
T Consensus 217 ~prg~Ll~gppg~Gkt~l~~aVa~e~~----a~~~~i~~p--------------eli~k~~gE----te~~LR~~f~~a~ 274 (693)
T KOG0730|consen 217 PPRGLLLYGPPGTGKTFLVRAVANEYG----AFLFLINGP--------------ELISKFPGE----TESNLRKAFAEAL 274 (693)
T ss_pred CCCCccccCCCCCChHHHHHHHHHHhC----ceeEecccH--------------HHHHhcccc----hHHHHHHHHHHHh
Confidence 467888999999999999999999764 233443221 122222222 1123335555666
Q ss_pred CCC-eEEEEEeCCCChh------------HHHHHhcccCCCCC--CcEEEEEeCChhHHHhc-C-CCCCcEEEcCCCCHH
Q 037291 248 WRM-KVLIVLDDVNEVG------------QLEGLIGELDQFGP--GSRIVVTTRDKGVLEKF-R-GEEKKIHRVNGLEFE 310 (349)
Q Consensus 248 ~~k-~~LlVlDdv~~~~------------~~~~l~~~~~~~~~--gs~IIiTtR~~~~~~~~-~-~~~~~~~~l~~L~~~ 310 (349)
..+ +.++.+|+++... ...++...+.+.++ ...+|-||+.++.+... . +..+.-+++.-.+..
T Consensus 275 k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~alRRgRfd~ev~IgiP~~~ 354 (693)
T KOG0730|consen 275 KFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPALRRGRFDREVEIGIPGSD 354 (693)
T ss_pred ccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccChhhhcCCCcceeeecCCCch
Confidence 667 8899999885332 12233333444443 33445566655432221 1 124566777777777
Q ss_pred HHHHHHHhhh
Q 037291 311 EAFEHFCNFA 320 (349)
Q Consensus 311 ea~~Lf~~~a 320 (349)
+-.++++.+.
T Consensus 355 ~RldIl~~l~ 364 (693)
T KOG0730|consen 355 GRLDILRVLT 364 (693)
T ss_pred hHHHHHHHHH
Confidence 7777776655
No 384
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.31 E-value=0.011 Score=53.69 Aligned_cols=88 Identities=19% Similarity=0.236 Sum_probs=53.8
Q ss_pred eEEEEeccCccchHHHHHHHHHhhhcC--CcceEEEEeccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHHHh
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQFTGE--FDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERV 247 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l 247 (349)
..+.|+|+.|+||||+++.++..+... -..++-+.+..+......+... + ............++..|
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~--------~---~~~~~~~~~~~~l~~aL 201 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQ--------L---RTSDDAISMTRLLKATL 201 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEE--------E---EecCCCCCHHHHHHHHh
Confidence 567799999999999999999887543 2334444433332210000000 0 00001124557788888
Q ss_pred CCCeEEEEEeCCCChhHHHHH
Q 037291 248 WRMKVLIVLDDVNEVGQLEGL 268 (349)
Q Consensus 248 ~~k~~LlVlDdv~~~~~~~~l 268 (349)
+..+=.+|+..+.+.+.+..+
T Consensus 202 R~~pD~iivGEiR~~ea~~~l 222 (299)
T TIGR02782 202 RLRPDRIIVGEVRGGEALDLL 222 (299)
T ss_pred cCCCCEEEEeccCCHHHHHHH
Confidence 888889999999887765543
No 385
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.30 E-value=0.0034 Score=50.79 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=20.4
Q ss_pred EEEeccCccchHHHHHHHHHhh
Q 037291 172 VGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 172 i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
|.|+|++|+||||+|+.++..+
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999876
No 386
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.047 Score=53.58 Aligned_cols=155 Identities=19% Similarity=0.254 Sum_probs=83.4
Q ss_pred CCCcccccchhhhHHHhh---hhcC------CCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCC
Q 037291 144 SNGLVGLNSRIEQIKPFL---CMDL------SDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGG 214 (349)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L---~~~~------~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 214 (349)
....-|.++..+++.+.+ .+.. ..-++-+.++|++|.|||.||++++-...--|-. .|. .
T Consensus 149 F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~---------iSG--S 217 (596)
T COG0465 149 FADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFS---------ISG--S 217 (596)
T ss_pred hhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCcee---------ccc--h
Confidence 345678776666655544 3320 1225678899999999999999999865333211 110 0
Q ss_pred ChHHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCCh----------------hHHHHHhcccCCCCCC
Q 037291 215 GLEHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEV----------------GQLEGLIGELDQFGPG 278 (349)
Q Consensus 215 ~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~----------------~~~~~l~~~~~~~~~g 278 (349)
++.++ +.+ .....+.+...+..+.-++++++|.++.. ..+++++-....++.+
T Consensus 218 ~FVem-------fVG----vGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~ 286 (596)
T COG0465 218 DFVEM-------FVG----VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGN 286 (596)
T ss_pred hhhhh-------hcC----CCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCC
Confidence 01100 000 00111223444444556899999988522 1366777777766643
Q ss_pred c--EEEEEeCChhHHHh-c-C-CCCCcEEEcCCCCHHHHHHHHHhhh
Q 037291 279 S--RIVVTTRDKGVLEK-F-R-GEEKKIHRVNGLEFEEAFEHFCNFA 320 (349)
Q Consensus 279 s--~IIiTtR~~~~~~~-~-~-~~~~~~~~l~~L~~~ea~~Lf~~~a 320 (349)
. .||..|.-++++.. + . ..-+..+.++..+-..-.+++.-|+
T Consensus 287 ~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~ 333 (596)
T COG0465 287 EGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHA 333 (596)
T ss_pred CceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHh
Confidence 3 33333433444322 1 1 1134566666666666677777555
No 387
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.29 E-value=0.0028 Score=51.61 Aligned_cols=20 Identities=35% Similarity=0.629 Sum_probs=18.7
Q ss_pred EEEEeccCccchHHHHHHHH
Q 037291 171 IVGIWGMGGIGKTTLAEAIF 190 (349)
Q Consensus 171 ~i~I~G~~GiGKTtLa~~~~ 190 (349)
.|+|+|.||+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58899999999999999987
No 388
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.29 E-value=0.0044 Score=51.21 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=22.6
Q ss_pred eeEEEEeccCccchHHHHHHHHHhh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
..++.|+|++|+|||||++.+.++.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4678899999999999999999876
No 389
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=96.29 E-value=0.018 Score=49.07 Aligned_cols=25 Identities=32% Similarity=0.537 Sum_probs=22.2
Q ss_pred CeeEEEEeccCccchHHHHHHHHHh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
...+++|.|..|.|||||.+.++-.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3478999999999999999998875
No 390
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=96.29 E-value=0.0034 Score=52.89 Aligned_cols=26 Identities=38% Similarity=0.558 Sum_probs=23.8
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
..+|+|-||=|+||||||+.+++++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 47899999999999999999999875
No 391
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.28 E-value=0.0055 Score=55.13 Aligned_cols=28 Identities=25% Similarity=0.312 Sum_probs=23.8
Q ss_pred CCeeEEEEeccCccchHHHHHHHHHhhh
Q 037291 167 DTVQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 167 ~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
....+|+|.|..|+||||+|+.+...+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4578999999999999999988866554
No 392
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.26 E-value=0.0046 Score=57.95 Aligned_cols=53 Identities=19% Similarity=0.211 Sum_probs=35.7
Q ss_pred CCcccccchhhhHHHhhhhc-----------CCCCeeEEEEeccCccchHHHHHHHHHhhhcCC
Q 037291 145 NGLVGLNSRIEQIKPFLCMD-----------LSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEF 197 (349)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f 197 (349)
..++|.+...+.+.-.+... .....+.|.++|++|+|||+||+.++..+...|
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~f 75 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 75 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 34666666666654444321 011246788999999999999999999775443
No 393
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=96.26 E-value=0.0048 Score=53.01 Aligned_cols=86 Identities=21% Similarity=0.283 Sum_probs=48.1
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHHHhhccccc----ccCCC------
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLE----VAGAN------ 238 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~----~~~~~------ 238 (349)
...++|.|.+|+|||+|+..+++..... ..+++. +........++...+...-...... ..++.
T Consensus 15 Gqr~~I~g~~g~GKt~Ll~~i~~~~~~d--~~V~~~----iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~ 88 (215)
T PF00006_consen 15 GQRIGIFGGAGVGKTVLLQEIANNQDAD--VVVYAL----IGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYR 88 (215)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHCTTT--EEEEEE----ESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHH
T ss_pred CCEEEEEcCcccccchhhHHHHhccccc--ceeeee----ccccchhHHHHHHHHhhcccccccccccccchhhHHHHhh
Confidence 3678899999999999999999877433 234443 2221334455555553321111100 01111
Q ss_pred ---chHHHHHHh--CCCeEEEEEeCCC
Q 037291 239 ---IPHFTKERV--WRMKVLIVLDDVN 260 (349)
Q Consensus 239 ---~~~~~~~~l--~~k~~LlVlDdv~ 260 (349)
..-.+.+++ .++.+|+++||+.
T Consensus 89 ~~~~a~t~AEyfrd~G~dVlli~Dslt 115 (215)
T PF00006_consen 89 APYTALTIAEYFRDQGKDVLLIIDSLT 115 (215)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEEEETHH
T ss_pred hhccchhhhHHHhhcCCceeehhhhhH
Confidence 111122333 6899999999994
No 394
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.26 E-value=0.0044 Score=53.35 Aligned_cols=24 Identities=38% Similarity=0.518 Sum_probs=21.6
Q ss_pred CeeEEEEeccCccchHHHHHHHHH
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFD 191 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~ 191 (349)
...+++|+|.+|+|||||++.++-
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhc
Confidence 347899999999999999999985
No 395
>PLN02674 adenylate kinase
Probab=96.25 E-value=0.025 Score=49.59 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=21.3
Q ss_pred eEEEEeccCccchHHHHHHHHHhh
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
..|.|.|++|+||||+|+.+++++
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~~ 55 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDEY 55 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc
Confidence 557799999999999999998865
No 396
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.24 E-value=0.041 Score=46.86 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=23.2
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
...+++|.|+.|+|||||++.++-...
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 32 PGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 347999999999999999999887543
No 397
>PRK13949 shikimate kinase; Provisional
Probab=96.24 E-value=0.0039 Score=51.58 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=21.7
Q ss_pred EEEEeccCccchHHHHHHHHHhhh
Q 037291 171 IVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 171 ~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
.|.|.|++|.||||+++.+++.+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 478999999999999999998764
No 398
>PRK14530 adenylate kinase; Provisional
Probab=96.23 E-value=0.0037 Score=53.88 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=21.7
Q ss_pred eEEEEeccCccchHHHHHHHHHhh
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
+.|.|.|++|+||||+|+.+++.+
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999876
No 399
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.23 E-value=0.0087 Score=55.81 Aligned_cols=108 Identities=15% Similarity=0.136 Sum_probs=60.7
Q ss_pred eEEEEeccCccchHHHHHHHHHhhhcCCc--ceEEEEeccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHHHh
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQFTGEFD--GSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERV 247 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l 247 (349)
..+.|+|+.|+||||++..+++.+..... .++-+.+.-+... .+...+.. ................++..+
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~--~~~~~~~~-----~~q~evg~~~~~~~~~l~~aL 222 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYIL--GSPDDLLP-----PAQSQIGRDVDSFANGIRLAL 222 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhcc--CCCceeec-----ccccccCCCccCHHHHHHHhh
Confidence 56789999999999999999887654322 3344443322211 01010000 000000111124456778888
Q ss_pred CCCeEEEEEeCCCChhHHHHHhcccCCCCCCcEEEEEeCC
Q 037291 248 WRMKVLIVLDDVNEVGQLEGLIGELDQFGPGSRIVVTTRD 287 (349)
Q Consensus 248 ~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IIiTtR~ 287 (349)
+..+=.|+++++.+.+.++..+... ..|..++-|-..
T Consensus 223 R~~PD~I~vGEiRd~et~~~al~aa---~TGH~v~tTlHa 259 (372)
T TIGR02525 223 RRAPKIIGVGEIRDLETFQAAVLAG---QSGHFCLGTLHV 259 (372)
T ss_pred ccCCCEEeeCCCCCHHHHHHHHHHH---hcCCcEEEeeCC
Confidence 8899999999999888776544332 234444444443
No 400
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=96.23 E-value=0.016 Score=56.65 Aligned_cols=26 Identities=27% Similarity=0.491 Sum_probs=22.9
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
...+||+|..|.|||||.+.+.-...
T Consensus 29 G~riGLvG~NGaGKSTLLkilaG~~~ 54 (530)
T COG0488 29 GERIGLVGRNGAGKSTLLKILAGELE 54 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCc
Confidence 47899999999999999999987653
No 401
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=96.22 E-value=0.019 Score=54.85 Aligned_cols=89 Identities=21% Similarity=0.239 Sum_probs=52.3
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcC-CcceEEEEeccccccCCCChHHHHHHHHHHhhccccc-c--c-C------
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGE-FDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLE-V--A-G------ 236 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~-~--~-~------ 236 (349)
..+.++|.|.+|+|||||+..++.....+ -+.++|. .+++- ......+...+...-...... . . +
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv~V~~-liGER---~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R 217 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFA-GVGER---SREGHELYHEMKESGVLDKTVMVYGQMNEPPGAR 217 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhhCCCEEEEE-cCCcc---hHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHH
Confidence 45788999999999999999999876533 3444444 34332 334555555554332111110 0 1 1
Q ss_pred ---CCchHHHHHHh---CCCeEEEEEeCCC
Q 037291 237 ---ANIPHFTKERV---WRMKVLIVLDDVN 260 (349)
Q Consensus 237 ---~~~~~~~~~~l---~~k~~LlVlDdv~ 260 (349)
....-.+.+++ .++++||++|++.
T Consensus 218 ~~a~~~a~tiAEyfrd~~G~~VLl~~DslT 247 (461)
T PRK12597 218 MRVVLTGLTIAEYLRDEEKEDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEEeccch
Confidence 11122334555 3789999999993
No 402
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.21 E-value=0.003 Score=51.80 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=19.9
Q ss_pred EEEeccCccchHHHHHHHHHhh
Q 037291 172 VGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 172 i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
|.|+|++|+||||+|+.+....
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999876
No 403
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.19 E-value=0.042 Score=55.65 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=22.6
Q ss_pred eeEEEEeccCccchHHHHHHHHHhh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
..+++++|+.|+||||++..++..+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhH
Confidence 4799999999999999999998765
No 404
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.18 E-value=0.0047 Score=52.41 Aligned_cols=25 Identities=32% Similarity=0.363 Sum_probs=22.6
Q ss_pred eeEEEEeccCccchHHHHHHHHHhh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
..+|.|.|++|+||||+|+.++.+.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4688999999999999999999874
No 405
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.17 E-value=0.032 Score=47.21 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=22.6
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
...+++|.|+.|.|||||.+.++...
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34789999999999999999998754
No 406
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.17 E-value=0.039 Score=50.42 Aligned_cols=24 Identities=42% Similarity=0.512 Sum_probs=20.6
Q ss_pred CCeeEEEEeccCccchHHHHHHHH
Q 037291 167 DTVQIVGIWGMGGIGKTTLAEAIF 190 (349)
Q Consensus 167 ~~~~~i~I~G~~GiGKTtLa~~~~ 190 (349)
+++..|.+.|.+|.|||-||.+..
T Consensus 243 ~dI~lV~L~G~AGtGKTlLALaAg 266 (436)
T COG1875 243 DDIDLVSLGGKAGTGKTLLALAAG 266 (436)
T ss_pred CCCCeEEeeccCCccHhHHHHHHH
Confidence 479999999999999998877554
No 407
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.17 E-value=0.0043 Score=52.97 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=22.7
Q ss_pred eeEEEEeccCccchHHHHHHHHHhh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
..+++|+|++|+|||||++.++...
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4789999999999999999999865
No 408
>PRK13948 shikimate kinase; Provisional
Probab=96.16 E-value=0.0048 Score=51.64 Aligned_cols=27 Identities=22% Similarity=0.329 Sum_probs=23.9
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
..+.|.+.|+.|+||||+++.+++++.
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 457888999999999999999998764
No 409
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.16 E-value=0.0038 Score=52.09 Aligned_cols=24 Identities=33% Similarity=0.587 Sum_probs=21.6
Q ss_pred eEEEEeccCccchHHHHHHHHHhh
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
.+++|+|++|+|||||++.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 578999999999999999999854
No 410
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=96.16 E-value=0.009 Score=47.08 Aligned_cols=50 Identities=24% Similarity=0.379 Sum_probs=34.9
Q ss_pred CCccccHHHHHHHhhCceEEEEecCCCCCchhhHHHHHHHHHhhhhCCCeEEEE
Q 037291 8 RGDEISDALLNAIQGSKISVVIFSKDYGSSKWCLNELVKILECKHTNRQIIIPV 61 (349)
Q Consensus 8 ~g~~~~~~i~~ai~~s~~~ivv~S~~y~~S~~cl~El~~i~~~~~~~~~~vlPv 61 (349)
..+.|...|.++|.+|.++||+.|++=..|+|+-.|+...++ .+..|+-|
T Consensus 56 ~~~~ik~~I~~~i~~s~~~IVLig~~T~~s~wV~~EI~~A~~----~~~~Ii~V 105 (130)
T PF08937_consen 56 SSEYIKRKIRERIKNSSVTIVLIGPNTAKSKWVNWEIEYALK----KGKPIIGV 105 (130)
T ss_dssp TTTTHHHHHHHHHHTEEEEEEE--TT----HHHHHHHHHHTT----T---EEEE
T ss_pred hHHHHHHHHHHHHhcCCEEEEEeCCCcccCcHHHHHHHHHHH----CCCCEEEE
Confidence 345789999999999999999999999999999999987765 34446665
No 411
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.15 E-value=0.0096 Score=51.47 Aligned_cols=35 Identities=37% Similarity=0.390 Sum_probs=23.4
Q ss_pred hhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhh
Q 037291 154 IEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 154 ~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
.+.+...+... .+..|+|++|.||||++..+...+
T Consensus 7 ~~Ai~~~~~~~-----~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 7 REAIQSALSSN-----GITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHHCTSS-----E-EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC-----CCEEEECCCCCChHHHHHHHHHHh
Confidence 34454455433 378899999999998877777766
No 412
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=96.15 E-value=0.049 Score=52.69 Aligned_cols=48 Identities=23% Similarity=0.221 Sum_probs=36.3
Q ss_pred CCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhh
Q 037291 145 NGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
..++|....+.++...+..- ......+.|.|..|+||+++|+.+...-
T Consensus 134 ~~lig~s~~~~~v~~~i~~~-a~~~~~vli~Ge~GtGK~~~A~~ih~~~ 181 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRL-SRSDITVLINGESGTGKELVARALHRHS 181 (463)
T ss_pred cceeecCHHHHHHHHHHHHH-hCcCCeEEEECCCCCCHHHHHHHHHHhC
Confidence 35888888888877776554 3334556799999999999999887643
No 413
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.15 E-value=0.0092 Score=51.80 Aligned_cols=49 Identities=24% Similarity=0.150 Sum_probs=33.2
Q ss_pred hhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcC-CcceEEEE
Q 037291 155 EQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGE-FDGSCFMS 204 (349)
Q Consensus 155 ~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 204 (349)
..|.++|..+ =....++.|.|++|+|||+|+.+++...... =..++|+.
T Consensus 6 ~~LD~~l~GG-ip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs 55 (226)
T PF06745_consen 6 PGLDELLGGG-IPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVS 55 (226)
T ss_dssp TTHHHHTTTS-EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEE
T ss_pred hhHHHhhcCC-CCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEE
Confidence 3445555332 2345789999999999999999988765444 45567776
No 414
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=96.14 E-value=0.0068 Score=56.87 Aligned_cols=52 Identities=19% Similarity=0.211 Sum_probs=37.1
Q ss_pred CCcccccchhhhHHHhhhhc---------C--CCCeeEEEEeccCccchHHHHHHHHHhhhcC
Q 037291 145 NGLVGLNSRIEQIKPFLCMD---------L--SDTVQIVGIWGMGGIGKTTLAEAIFDQFTGE 196 (349)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~---------~--~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 196 (349)
..++|.+...+.+...+... . ......+.++|++|+|||+||+.++..+...
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~ 77 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAP 77 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCCh
Confidence 45777777777776665331 0 0124678899999999999999999876544
No 415
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.13 E-value=0.0051 Score=51.76 Aligned_cols=26 Identities=23% Similarity=0.436 Sum_probs=23.1
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
...+|.|+|++|+|||||++.+..+.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 35789999999999999999998864
No 416
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.12 E-value=0.01 Score=53.17 Aligned_cols=32 Identities=19% Similarity=0.248 Sum_probs=28.0
Q ss_pred CCeeEEEEeccCccchHHHHHHHHHhhhcCCc
Q 037291 167 DTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFD 198 (349)
Q Consensus 167 ~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~ 198 (349)
.++.++.|.|.+|.|||||+..+...+.....
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~ 133 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVP 133 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccCCC
Confidence 36899999999999999999999998766653
No 417
>PRK13946 shikimate kinase; Provisional
Probab=96.12 E-value=0.0047 Score=51.89 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=23.1
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
...|.+.|++|+||||+++.+++++.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 35789999999999999999999873
No 418
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.043 Score=51.57 Aligned_cols=29 Identities=34% Similarity=0.430 Sum_probs=24.3
Q ss_pred CCeeEEEEeccCccchHHHHHHHHHhhhc
Q 037291 167 DTVQIVGIWGMGGIGKTTLAEAIFDQFTG 195 (349)
Q Consensus 167 ~~~~~i~I~G~~GiGKTtLa~~~~~~~~~ 195 (349)
..++-+.+.|++|.|||.|++.++-+...
T Consensus 184 ~p~rglLLfGPpgtGKtmL~~aiAsE~~a 212 (428)
T KOG0740|consen 184 EPVRGLLLFGPPGTGKTMLAKAIATESGA 212 (428)
T ss_pred cccchhheecCCCCchHHHHHHHHhhhcc
Confidence 34667779999999999999999987643
No 419
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=96.11 E-value=0.023 Score=54.00 Aligned_cols=87 Identities=20% Similarity=0.210 Sum_probs=47.9
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHHHhhccccc-c--c-CC------
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLE-V--A-GA------ 237 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~-~--~-~~------ 237 (349)
....++|.|.+|+|||||++.++..... +..++. .+++- ......+....+..-...... . . ++
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~~--d~~v~~-~iGER---~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~ 230 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNADA--DVSVIG-LIGER---GREVQEFLQDDLGPEGLARSVVVVATSDEPALMRR 230 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCC--CEEEEE-EEecC---cHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHH
Confidence 4578899999999999999988876532 334443 23222 333444444333321111100 0 1 11
Q ss_pred ---CchHHHHHHh--CCCeEEEEEeCCC
Q 037291 238 ---NIPHFTKERV--WRMKVLIVLDDVN 260 (349)
Q Consensus 238 ---~~~~~~~~~l--~~k~~LlVlDdv~ 260 (349)
...-.+.+++ .++.+|+++||+.
T Consensus 231 ~a~~~a~tiAEyfrd~G~~Vll~~DslT 258 (442)
T PRK08927 231 QAAYLTLAIAEYFRDQGKDVLCLMDSVT 258 (442)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEEeCcH
Confidence 1111233444 5789999999994
No 420
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.09 E-value=0.013 Score=53.52 Aligned_cols=53 Identities=23% Similarity=0.353 Sum_probs=44.0
Q ss_pred CCCcccccchhhhHHHhhhhc---CCCCeeEEEEeccCccchHHHHHHHHHhhhcC
Q 037291 144 SNGLVGLNSRIEQIKPFLCMD---LSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGE 196 (349)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~---~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 196 (349)
.+.|+|.++.++++.+.+... ....-+++.+.||.|.|||||++.+.+-+...
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y 115 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEY 115 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheE
Confidence 357999999999999988754 23457899999999999999999998876544
No 421
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.09 E-value=0.037 Score=52.13 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=22.2
Q ss_pred eeEEEEeccCccchHHHHHHHHHhh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
..++.++|++|+||||++..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4688999999999999999998754
No 422
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.09 E-value=0.011 Score=49.57 Aligned_cols=21 Identities=29% Similarity=0.094 Sum_probs=18.6
Q ss_pred EEEEeccCccchHHHHHHHHH
Q 037291 171 IVGIWGMGGIGKTTLAEAIFD 191 (349)
Q Consensus 171 ~i~I~G~~GiGKTtLa~~~~~ 191 (349)
++.|+|+.|.||||+.+.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 367999999999999999883
No 423
>PRK13808 adenylate kinase; Provisional
Probab=96.09 E-value=0.0082 Score=54.87 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=20.1
Q ss_pred EEEeccCccchHHHHHHHHHhh
Q 037291 172 VGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 172 i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
|.|.|++|+||||+++.++..+
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~y 24 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQY 24 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999998865
No 424
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=96.09 E-value=0.03 Score=53.26 Aligned_cols=90 Identities=20% Similarity=0.268 Sum_probs=53.2
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHHHhhccccc----ccCC------
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLE----VAGA------ 237 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~----~~~~------ 237 (349)
..+.++|.|.+|+|||||+..++.....+...++.+..+++- ......++..+...-...... ..++
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~~~~~~v~V~alIGER---~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~ 218 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGER---TREGNDLYHEMKESGVIDKTALVYGQMNEPPGARM 218 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHHhcCCCeEEEEEecCC---chHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 457889999999999999999988765443434444444433 334555666554331111100 0111
Q ss_pred ---CchHHHHHHh---CCCeEEEEEeCCC
Q 037291 238 ---NIPHFTKERV---WRMKVLIVLDDVN 260 (349)
Q Consensus 238 ---~~~~~~~~~l---~~k~~LlVlDdv~ 260 (349)
...-.+.+++ +++++||++|++.
T Consensus 219 ~a~~~a~tiAEyfrd~~G~~VLll~DslT 247 (461)
T TIGR01039 219 RVALTGLTMAEYFRDEQGQDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHHHHHhcCCeeEEEecchh
Confidence 1122334555 4579999999994
No 425
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.08 E-value=0.27 Score=44.51 Aligned_cols=130 Identities=8% Similarity=0.123 Sum_probs=76.7
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhhcC---------Cc-ceEEEEeccccccCCCChHHHHHHHHHHhhcccccccCCC
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFTGE---------FD-GSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGAN 238 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~---------f~-~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~ 238 (349)
.+...++|..|+||+++|..+.+.+-.. .+ ...++. . ....-...++. ++...+.-..
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d-~---~g~~i~vd~Ir-~l~~~~~~~~------- 85 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFD-I---FDKDLSKSEFL-SAINKLYFSS------- 85 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEec-c---CCCcCCHHHHH-HHHHHhccCC-------
Confidence 5667799999999999999999876211 11 111121 0 00012222221 2222211100
Q ss_pred chHHHHHHhCCCeEEEEEeCCCChh--HHHHHhcccCCCCCCcEEEEEeCC-hhHHHh-cCCCCCcEEEcCCCCHHHHHH
Q 037291 239 IPHFTKERVWRMKVLIVLDDVNEVG--QLEGLIGELDQFGPGSRIVVTTRD-KGVLEK-FRGEEKKIHRVNGLEFEEAFE 314 (349)
Q Consensus 239 ~~~~~~~~l~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IIiTtR~-~~~~~~-~~~~~~~~~~l~~L~~~ea~~ 314 (349)
.-.+.+=++|+|+++... ..+.++..+....+.+.+|++|.+ ..++.. .. ....+++.+++.++..+
T Consensus 86 -------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~S--Rc~~~~f~~l~~~~l~~ 156 (299)
T PRK07132 86 -------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVS--RCQVFNVKEPDQQKILA 156 (299)
T ss_pred -------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHh--CeEEEECCCCCHHHHHH
Confidence 001356788899997553 466777777766777877776654 344433 22 46789999999999988
Q ss_pred HHHhh
Q 037291 315 HFCNF 319 (349)
Q Consensus 315 Lf~~~ 319 (349)
.+...
T Consensus 157 ~l~~~ 161 (299)
T PRK07132 157 KLLSK 161 (299)
T ss_pred HHHHc
Confidence 77653
No 426
>PRK14527 adenylate kinase; Provisional
Probab=96.06 E-value=0.0058 Score=51.59 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=23.2
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
...+|.|.|++|+||||+|+.+++++
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998765
No 427
>PRK13975 thymidylate kinase; Provisional
Probab=96.06 E-value=0.0056 Score=51.81 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=23.5
Q ss_pred eEEEEeccCccchHHHHHHHHHhhhc
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQFTG 195 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~~~ 195 (349)
..|+|.|+.|+||||+|+.+++++..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57899999999999999999998754
No 428
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.06 E-value=0.013 Score=50.96 Aligned_cols=48 Identities=17% Similarity=0.095 Sum_probs=33.1
Q ss_pred hHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEE
Q 037291 156 QIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMS 204 (349)
Q Consensus 156 ~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 204 (349)
.|.++|... =.....+.|.|.+|+|||+|+.+++......-..++|+.
T Consensus 8 ~LD~~l~GG-i~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is 55 (229)
T TIGR03881 8 GLDKLLEGG-IPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVT 55 (229)
T ss_pred hHHHhhcCC-CcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 344444322 234588999999999999999998765434445667776
No 429
>PLN02459 probable adenylate kinase
Probab=96.05 E-value=0.0089 Score=52.68 Aligned_cols=91 Identities=24% Similarity=0.226 Sum_probs=47.8
Q ss_pred EEEEeccCccchHHHHHHHHHhhhcCCcceEEEE---eccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHHHh
Q 037291 171 IVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMS---DVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERV 247 (349)
Q Consensus 171 ~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~---~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l 247 (349)
.+.|.|++|+||||+|+.+++.+. |. ++. .++........+-.. +..........+++.+...+.+.+
T Consensus 31 ~ii~~G~PGsGK~T~a~~la~~~~--~~---~is~gdllR~ei~~~t~lg~~----i~~~~~~G~lVPdeiv~~ll~~~l 101 (261)
T PLN02459 31 NWVFLGCPGVGKGTYASRLSKLLG--VP---HIATGDLVREEIKSSGPLGAQ----LKEIVNQGKLVPDEIIFSLLSKRL 101 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--Cc---EEeCcHHHHHHHhccchhHHH----HHHHHHcCCccCHHHHHHHHHHHH
Confidence 367789999999999999998652 22 221 011100001111111 222222222223333445556655
Q ss_pred CC----CeEEEEEeCC-CChhHHHHHhc
Q 037291 248 WR----MKVLIVLDDV-NEVGQLEGLIG 270 (349)
Q Consensus 248 ~~----k~~LlVlDdv-~~~~~~~~l~~ 270 (349)
.. ..--+|||++ .+..|.+.|..
T Consensus 102 ~~~~~~~~~g~iLDGFPRt~~Qa~~Le~ 129 (261)
T PLN02459 102 EAGEEEGESGFILDGFPRTVRQAEILEG 129 (261)
T ss_pred hcccccCCceEEEeCCCCCHHHHHHHHh
Confidence 42 3456899999 66777666643
No 430
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=96.05 E-value=0.0079 Score=53.72 Aligned_cols=34 Identities=29% Similarity=0.444 Sum_probs=28.8
Q ss_pred eEEEEeccCccchHHHHHHHHHhhhcCCcceEEEE
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMS 204 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 204 (349)
++|+|+|.+|+|||||+..++..++... .++.+.
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IK 35 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVK 35 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEE
Confidence 5799999999999999999999988776 455554
No 431
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.05 E-value=0.044 Score=46.81 Aligned_cols=24 Identities=25% Similarity=0.108 Sum_probs=21.1
Q ss_pred CeeEEEEeccCccchHHHHHHHHH
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFD 191 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~ 191 (349)
..++++|.|+.|.||||+.+.++-
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999998864
No 432
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=96.05 E-value=0.034 Score=49.37 Aligned_cols=90 Identities=20% Similarity=0.191 Sum_probs=51.6
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhh----cCCcceEEEEeccccccCCCChHHHHHHHHHHhhccccc----ccC---
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFT----GEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLE----VAG--- 236 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~----~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~----~~~--- 236 (349)
..+.++|.|-+|+|||+|+..++++.. .+-+.++|.- +++- .....++...+...-...... ..+
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~-IGeR---~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~ 143 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAA-MGIT---MEDARFFKDDFEETGALERVVLFLNLANDPT 143 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEE-eccc---cHHHHHHHHHhhhcCCcceEEEEEecCCCCH
Confidence 357789999999999999999887653 1234444443 3332 445566666655432111110 011
Q ss_pred ------CCchHHHHHHhC---CCeEEEEEeCCCC
Q 037291 237 ------ANIPHFTKERVW---RMKVLIVLDDVNE 261 (349)
Q Consensus 237 ------~~~~~~~~~~l~---~k~~LlVlDdv~~ 261 (349)
.-..-.+.++++ ++++|+++||+..
T Consensus 144 ~~r~~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr 177 (276)
T cd01135 144 IERIITPRMALTTAEYLAYEKGKHVLVILTDMTN 177 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCeEEEEEcChhH
Confidence 111122344442 6899999999953
No 433
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=96.05 E-value=0.013 Score=53.48 Aligned_cols=35 Identities=31% Similarity=0.364 Sum_probs=27.0
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhhcCCcceEEE
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFM 203 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 203 (349)
.+++.+.|.||+||||+|.+.+-..........-+
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlv 36 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLV 36 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEE
Confidence 47889999999999999999887766555434333
No 434
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.04 E-value=0.009 Score=50.81 Aligned_cols=110 Identities=19% Similarity=0.226 Sum_probs=48.7
Q ss_pred CCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHHHhhccccccc---CCCchHH
Q 037291 166 SDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVA---GANIPHF 242 (349)
Q Consensus 166 ~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~---~~~~~~~ 242 (349)
+..+.++.|.|.+|.||||++..+...+. ....+.+. ....-..-.....+.. .......... ...+.+.
T Consensus 12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~--~~~~v~i~-~D~~r~~~p~~~~~~~----~~~~~~~~~~~~~a~~~~~~ 84 (199)
T PF06414_consen 12 QEKPTLIIIAGQPGSGKSTLARQLLEEFG--GGGIVVID-ADEFRQFHPDYDELLK----ADPDEASELTQKEASRLAEK 84 (199)
T ss_dssp -SS-EEEEEES-TTSTTHHHHHHHHHHT---TT-SEEE--GGGGGGGSTTHHHHHH----HHCCCTHHHHHHHHHHHHHH
T ss_pred ccCCEEEEEeCCCCCCHHHHHHHhhhhcc--CCCeEEEe-hHHHHHhccchhhhhh----hhhhhhHHHHHHHHHHHHHH
Confidence 34578888899999999999999988663 23334442 3222221112222222 1000000000 0222344
Q ss_pred HHHHhCCCeEEEEEeCCC-ChhHHHHHhcccCCCCCCcEEE
Q 037291 243 TKERVWRMKVLIVLDDVN-EVGQLEGLIGELDQFGPGSRIV 282 (349)
Q Consensus 243 ~~~~l~~k~~LlVlDdv~-~~~~~~~l~~~~~~~~~gs~II 282 (349)
+.+....+++=+|+|..- +......+...+...|-...|+
T Consensus 85 ~~~~a~~~~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~ 125 (199)
T PF06414_consen 85 LIEYAIENRYNIIFEGTLSNPSKLRKLIREAKAAGYKVELY 125 (199)
T ss_dssp HHHHHHHCT--EEEE--TTSSHHHHHHHHHHHCTT-EEEEE
T ss_pred HHHHHHHcCCCEEEecCCCChhHHHHHHHHHHcCCceEEEE
Confidence 444555567778889874 4455554555544333333333
No 435
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=96.01 E-value=0.016 Score=57.91 Aligned_cols=25 Identities=36% Similarity=0.377 Sum_probs=21.8
Q ss_pred CeeEEEEeccCccchHHHHHHHHHh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
....++|+|.+|.|||||++.+...
T Consensus 360 ~G~~v~IvG~sGsGKSTLl~lL~gl 384 (588)
T PRK13657 360 PGQTVAIVGPTGAGKSTLINLLQRV 384 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3478999999999999999999753
No 436
>PHA02244 ATPase-like protein
Probab=96.01 E-value=0.0069 Score=55.91 Aligned_cols=50 Identities=18% Similarity=0.158 Sum_probs=31.4
Q ss_pred CCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhh
Q 037291 144 SNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
...++|....+......+..-...+ .-|.|+|++|+|||+||+.+++...
T Consensus 95 d~~~ig~sp~~~~~~~ri~r~l~~~-~PVLL~GppGtGKTtLA~aLA~~lg 144 (383)
T PHA02244 95 DTTKIASNPTFHYETADIAKIVNAN-IPVFLKGGAGSGKNHIAEQIAEALD 144 (383)
T ss_pred CCcccCCCHHHHHHHHHHHHHHhcC-CCEEEECCCCCCHHHHHHHHHHHhC
Confidence 3456676655543333222210112 3467899999999999999998754
No 437
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.01 E-value=0.0046 Score=52.01 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=21.2
Q ss_pred eEEEEeccCccchHHHHHHHHHhh
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
..++|.|++|+|||||++.++...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 468899999999999999997754
No 438
>PRK04182 cytidylate kinase; Provisional
Probab=96.00 E-value=0.0059 Score=50.77 Aligned_cols=23 Identities=39% Similarity=0.566 Sum_probs=21.4
Q ss_pred EEEEeccCccchHHHHHHHHHhh
Q 037291 171 IVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 171 ~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
+|+|.|+.|+||||+|+.+++++
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68899999999999999999876
No 439
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.00 E-value=0.004 Score=53.11 Aligned_cols=22 Identities=27% Similarity=0.119 Sum_probs=20.5
Q ss_pred eEEEEeccCccchHHHHHHHHH
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFD 191 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~ 191 (349)
.+++|+|+.|.|||||.+.++.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 7899999999999999999984
No 440
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.99 E-value=0.12 Score=42.69 Aligned_cols=116 Identities=16% Similarity=0.099 Sum_probs=59.5
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHHHhh----ccccc--ccC------
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTIL----SEKLE--VAG------ 236 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~----~~~~~--~~~------ 236 (349)
...|-|++..|.||||.|..++-+...+=..++.+.-+.... ..+-...+..+ .+. +.... ..+
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~--~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~ 80 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAW--PNGERAAFEPH--GVEFQVMGTGFTWETQNREADTA 80 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCc--ccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHH
Confidence 367778888999999999999887655433344333221110 11222222222 110 00000 000
Q ss_pred --CCchHHHHHHhC-CCeEEEEEeCCC-----ChhHHHHHhcccCCCCCCcEEEEEeCCh
Q 037291 237 --ANIPHFTKERVW-RMKVLIVLDDVN-----EVGQLEGLIGELDQFGPGSRIVVTTRDK 288 (349)
Q Consensus 237 --~~~~~~~~~~l~-~k~~LlVlDdv~-----~~~~~~~l~~~~~~~~~gs~IIiTtR~~ 288 (349)
.......++.+. +.-=|+|||.+. ..-..+.+...+..-.++..+|+|-|+.
T Consensus 81 ~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 81 IAKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 111233344444 345699999984 2222333433333334567999999976
No 441
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=95.98 E-value=0.028 Score=54.58 Aligned_cols=105 Identities=15% Similarity=0.114 Sum_probs=60.5
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHHHhC
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERVW 248 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~ 248 (349)
..++.|+|+.|.||||+...+.+.+...-..++-+.+.-+..- .+. .+... ...........++..|+
T Consensus 242 ~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~~--~~~--------~q~~v--~~~~g~~f~~~lr~~LR 309 (486)
T TIGR02533 242 HGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQI--EGI--------GQIQV--NPKIGLTFAAGLRAILR 309 (486)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeeec--CCC--------ceEEE--ccccCccHHHHHHHHHh
Confidence 4689999999999999999888776433233444433221111 011 01000 00011234577888888
Q ss_pred CCeEEEEEeCCCChhHHHHHhcccCCCCCCcEEEEEeCCh
Q 037291 249 RMKVLIVLDDVNEVGQLEGLIGELDQFGPGSRIVVTTRDK 288 (349)
Q Consensus 249 ~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IIiTtR~~ 288 (349)
..+=.+++.++.+.+.....+... ..|..++-|-...
T Consensus 310 ~dPDvI~vGEiRd~eta~~a~~aa---~tGHlvlsTlHa~ 346 (486)
T TIGR02533 310 QDPDIIMVGEIRDLETAQIAIQAS---LTGHLVLSTLHTN 346 (486)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHH---HhCCcEEEEECCC
Confidence 899999999998887655544332 2344444444433
No 442
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.98 E-value=0.08 Score=45.39 Aligned_cols=53 Identities=13% Similarity=0.266 Sum_probs=32.2
Q ss_pred HHHHhCCCeEEEEEeCCCC---hhHHHHHhcccCCC-CCCcEEEEEeCChhHHHhcC
Q 037291 243 TKERVWRMKVLIVLDDVNE---VGQLEGLIGELDQF-GPGSRIVVTTRDKGVLEKFR 295 (349)
Q Consensus 243 ~~~~l~~k~~LlVlDdv~~---~~~~~~l~~~~~~~-~~gs~IIiTtR~~~~~~~~~ 295 (349)
+.+.+--++-+.|||.-++ .+.++.+...+..+ .+++-+|+.|....+++...
T Consensus 155 ilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~ 211 (251)
T COG0396 155 ILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIK 211 (251)
T ss_pred HHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcC
Confidence 3344445688999998863 34443333322211 34666777788888888775
No 443
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.98 E-value=0.022 Score=54.15 Aligned_cols=26 Identities=31% Similarity=0.429 Sum_probs=21.9
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
....++|+|.+|+|||||++.++...
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~ 189 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARAD 189 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 35789999999999999998887643
No 444
>PLN02200 adenylate kinase family protein
Probab=95.97 E-value=0.0067 Score=52.98 Aligned_cols=26 Identities=38% Similarity=0.420 Sum_probs=22.8
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
...+|.|.|++|+||||+|+.+++.+
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 35688999999999999999998865
No 445
>PRK12678 transcription termination factor Rho; Provisional
Probab=95.96 E-value=0.014 Score=56.72 Aligned_cols=90 Identities=18% Similarity=0.214 Sum_probs=49.2
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcC-CcceEEEEeccccccCCCChHHHHHHHHHHhhccccccc---C---CCch
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGE-FDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVA---G---ANIP 240 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~---~---~~~~ 240 (349)
.....+|+|++|+|||||++.+++.+... -+..+++..+.+-.. ....+...+-..+.......+ . ..+.
T Consensus 415 kGQR~LIvgpp~aGKTtLL~~IAn~i~~n~~~~~~ivvLIgERpe---EVtdm~rsVkgeVVasT~D~p~~~~~~~a~~a 491 (672)
T PRK12678 415 KGQRGLIVSPPKAGKTTILQNIANAITTNNPECHLMVVLVDERPE---EVTDMQRSVKGEVIASTFDRPPSDHTTVAELA 491 (672)
T ss_pred cCCEeEEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEEEeCchh---hHHHHHHhccceEEEECCCCCHHHHHHHHHHH
Confidence 45677899999999999999999977543 344455554544322 222222222000111100000 0 1111
Q ss_pred HHHHHHh--CCCeEEEEEeCCC
Q 037291 241 HFTKERV--WRMKVLIVLDDVN 260 (349)
Q Consensus 241 ~~~~~~l--~~k~~LlVlDdv~ 260 (349)
-.+.+++ .++.+||++|++.
T Consensus 492 i~~Ae~fre~G~dVlillDSlT 513 (672)
T PRK12678 492 IERAKRLVELGKDVVVLLDSIT 513 (672)
T ss_pred HHHHHHHHHcCCCEEEEEeCch
Confidence 2233444 5789999999995
No 446
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.95 E-value=0.0061 Score=48.37 Aligned_cols=25 Identities=32% Similarity=0.393 Sum_probs=21.8
Q ss_pred eeEEEEeccCccchHHHHHHHHHhh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
.+-|.|+|.+|+||||||.+++...
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh
Confidence 4668899999999999999999754
No 447
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.95 E-value=0.0068 Score=50.32 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=22.1
Q ss_pred eEEEEeccCccchHHHHHHHHHhhh
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
..|.|.|+.|.|||||++.++..+.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcC
Confidence 4688999999999999999998753
No 448
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.95 E-value=0.032 Score=54.97 Aligned_cols=25 Identities=32% Similarity=0.337 Sum_probs=22.0
Q ss_pred CeeEEEEeccCccchHHHHHHHHHh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
....++|+|++|+|||||++.+..-
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~ 384 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGL 384 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4578999999999999999999753
No 449
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=95.94 E-value=0.0088 Score=48.68 Aligned_cols=26 Identities=31% Similarity=0.439 Sum_probs=23.2
Q ss_pred EEEEeccCccchHHHHHHHHHhhhcC
Q 037291 171 IVGIWGMGGIGKTTLAEAIFDQFTGE 196 (349)
Q Consensus 171 ~i~I~G~~GiGKTtLa~~~~~~~~~~ 196 (349)
+++|+|+.|+|||||+..+...++.+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~ 26 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR 26 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999987655
No 450
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=95.94 E-value=0.18 Score=45.36 Aligned_cols=57 Identities=5% Similarity=0.067 Sum_probs=36.4
Q ss_pred CCeEEEEEeCCCCh--hHHHHHhcccCCCCCCcEEEEEeCCh-hHHHh-cCCCCCcEEEcCCC
Q 037291 249 RMKVLIVLDDVNEV--GQLEGLIGELDQFGPGSRIVVTTRDK-GVLEK-FRGEEKKIHRVNGL 307 (349)
Q Consensus 249 ~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTtR~~-~~~~~-~~~~~~~~~~l~~L 307 (349)
++.=++|+|+++.. +..+.++..+.-..+++.+|++|.+. .++.. .. ....+.+.++
T Consensus 94 ~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~S--Rcq~~~~~~~ 154 (290)
T PRK05917 94 SPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRS--RSLSIHIPME 154 (290)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHh--cceEEEccch
Confidence 44568889999744 56777777777666777777777664 44433 22 3456666654
No 451
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=95.94 E-value=0.0097 Score=48.48 Aligned_cols=36 Identities=28% Similarity=0.363 Sum_probs=29.3
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEE
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMS 204 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 204 (349)
.++++|+|..|+|||||+..+...++.+--.+..+-
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iK 37 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVK 37 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEE
Confidence 478999999999999999999998876654444443
No 452
>PRK13764 ATPase; Provisional
Probab=95.94 E-value=0.026 Score=55.81 Aligned_cols=85 Identities=13% Similarity=0.081 Sum_probs=50.7
Q ss_pred eEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHHHhCC
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERVWR 249 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~ 249 (349)
..|.|+|++|+||||+++.+++.+...-..+..+.+..+... ... ..++. .............|+.
T Consensus 258 ~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~-~~~--------i~q~~-----~~~~~~~~~~~~lLR~ 323 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQV-PPE--------ITQYS-----KLEGSMEETADILLLV 323 (602)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccC-CCc--------ceEEe-----eccccHHHHHHHHHhh
Confidence 558899999999999999999877644333335554443321 110 00100 0001111222333666
Q ss_pred CeEEEEEeCCCChhHHHHH
Q 037291 250 MKVLIVLDDVNEVGQLEGL 268 (349)
Q Consensus 250 k~~LlVlDdv~~~~~~~~l 268 (349)
++=.+++|++.+.+.++.+
T Consensus 324 rPD~IivGEiRd~Et~~~~ 342 (602)
T PRK13764 324 RPDYTIYDEMRKTEDFKIF 342 (602)
T ss_pred CCCEEEECCCCCHHHHHHH
Confidence 7889999999988877764
No 453
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.93 E-value=0.0065 Score=46.70 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=19.3
Q ss_pred EEEeccCccchHHHHHHHHHh
Q 037291 172 VGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 172 i~I~G~~GiGKTtLa~~~~~~ 192 (349)
|.|.|..|+|||||.+.++..
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGG 22 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 679999999999999999974
No 454
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=95.93 E-value=0.045 Score=54.57 Aligned_cols=27 Identities=30% Similarity=0.314 Sum_probs=22.9
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhhc
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFTG 195 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~~ 195 (349)
.++..|+|.+|.||||+++.+...+..
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~l~~ 193 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAALIQ 193 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 468889999999999999998876543
No 455
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=95.92 E-value=0.0066 Score=50.02 Aligned_cols=23 Identities=39% Similarity=0.583 Sum_probs=21.2
Q ss_pred EEEEeccCccchHHHHHHHHHhh
Q 037291 171 IVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 171 ~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
+|+|.|+.|+||||+|+.+.+++
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999998865
No 456
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.92 E-value=0.0057 Score=50.19 Aligned_cols=21 Identities=43% Similarity=0.434 Sum_probs=17.8
Q ss_pred EEEeccCccchHHHHHHHHHh
Q 037291 172 VGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 172 i~I~G~~GiGKTtLa~~~~~~ 192 (349)
|+|+|..|+|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999977
No 457
>PF13245 AAA_19: Part of AAA domain
Probab=95.91 E-value=0.0082 Score=42.43 Aligned_cols=24 Identities=29% Similarity=0.308 Sum_probs=17.5
Q ss_pred eeEEEEeccCccchHHHHHHHHHh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
.+++.|.|++|.|||+++......
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 367778999999999555544443
No 458
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=95.90 E-value=0.0069 Score=50.09 Aligned_cols=24 Identities=33% Similarity=0.390 Sum_probs=21.4
Q ss_pred eEEEEeccCccchHHHHHHHHHhh
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
..|.|+|++|+||||+|+.+++++
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~l 26 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQAL 26 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 357889999999999999999876
No 459
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=95.90 E-value=0.0072 Score=50.72 Aligned_cols=28 Identities=25% Similarity=0.490 Sum_probs=23.6
Q ss_pred eEEEEeccCccchHHHHHHHHHhhhcCC
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQFTGEF 197 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~~~~f 197 (349)
+.+.|+|++|+||+||+..+.......|
T Consensus 3 r~ivl~Gpsg~GK~tl~~~L~~~~~~~~ 30 (184)
T smart00072 3 RPIVLSGPSGVGKGTLLAELIQEIPDAF 30 (184)
T ss_pred cEEEEECCCCCCHHHHHHHHHhcCCcce
Confidence 6788999999999999999988754334
No 460
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.89 E-value=0.019 Score=57.37 Aligned_cols=26 Identities=31% Similarity=0.463 Sum_probs=22.8
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
....++|+|++|.|||||++.+...+
T Consensus 375 ~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 375 AGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45789999999999999999998755
No 461
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.89 E-value=0.0049 Score=53.43 Aligned_cols=24 Identities=25% Similarity=0.073 Sum_probs=21.2
Q ss_pred CeeEEEEeccCccchHHHHHHHHH
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFD 191 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~ 191 (349)
..+++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~ 52 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGV 52 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHH
Confidence 467899999999999999998764
No 462
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.89 E-value=0.091 Score=45.47 Aligned_cols=24 Identities=17% Similarity=-0.096 Sum_probs=21.2
Q ss_pred CeeEEEEeccCccchHHHHHHHHH
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFD 191 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~ 191 (349)
..+++.|.|+.|.||||+.+.+.-
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357889999999999999998876
No 463
>PRK05973 replicative DNA helicase; Provisional
Probab=95.88 E-value=0.022 Score=49.69 Aligned_cols=36 Identities=19% Similarity=0.112 Sum_probs=28.2
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEE
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMS 204 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 204 (349)
..++.|.|.+|+|||++|.+++.....+-..++|+.
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 478889999999999999999886644444455665
No 464
>PRK08149 ATP synthase SpaL; Validated
Probab=95.88 E-value=0.03 Score=53.06 Aligned_cols=87 Identities=18% Similarity=0.264 Sum_probs=48.7
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHHHhhcccccc----cCC------
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEV----AGA------ 237 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~----~~~------ 237 (349)
....++|.|.+|+|||||+..++..... +..++.. + .........+...++.......... .++
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~~~--dv~v~g~-I---g~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~ 223 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHSEA--DVFVIGL-I---GERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRC 223 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCCCC--CeEEEEE-E---eeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHH
Confidence 4578899999999999999988875322 2223221 2 2224455556555554322111110 000
Q ss_pred ---CchHHHHHHh--CCCeEEEEEeCCC
Q 037291 238 ---NIPHFTKERV--WRMKVLIVLDDVN 260 (349)
Q Consensus 238 ---~~~~~~~~~l--~~k~~LlVlDdv~ 260 (349)
.....+.+++ .++++||++||+-
T Consensus 224 ~a~~~a~tiAE~fr~~G~~Vll~~DslT 251 (428)
T PRK08149 224 NAALVATTVAEYFRDQGKRVVLFIDSMT 251 (428)
T ss_pred hHHHHHHHHHHHHHHcCCCEEEEccchH
Confidence 1112223333 5789999999994
No 465
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=95.88 E-value=0.01 Score=49.43 Aligned_cols=36 Identities=25% Similarity=0.397 Sum_probs=31.3
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEE
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMS 204 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 204 (349)
...|++-|++|+|||+|..+.+..++++|...+--.
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~ 48 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITG 48 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEec
Confidence 478999999999999999999999998887665544
No 466
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.87 E-value=0.0074 Score=45.55 Aligned_cols=22 Identities=45% Similarity=0.395 Sum_probs=20.0
Q ss_pred eeEEEEeccCccchHHHHHHHH
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIF 190 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~ 190 (349)
...++|.|++|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4778999999999999999986
No 467
>PRK14531 adenylate kinase; Provisional
Probab=95.86 E-value=0.0076 Score=50.54 Aligned_cols=24 Identities=29% Similarity=0.268 Sum_probs=21.4
Q ss_pred eEEEEeccCccchHHHHHHHHHhh
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
..|.|.|++|+||||+++.+++.+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999999875
No 468
>PHA02774 E1; Provisional
Probab=95.85 E-value=0.03 Score=54.60 Aligned_cols=39 Identities=18% Similarity=0.265 Sum_probs=28.8
Q ss_pred hhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhh
Q 037291 154 IEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 154 ~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
+..+..+|... ....-+.|+|++|.|||.+|-.+++-+.
T Consensus 421 l~~lk~~l~~~--PKknciv~~GPP~TGKS~fa~sL~~~L~ 459 (613)
T PHA02774 421 LTALKDFLKGI--PKKNCLVIYGPPDTGKSMFCMSLIKFLK 459 (613)
T ss_pred HHHHHHHHhcC--CcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 44455555432 3346788999999999999999998763
No 469
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.85 E-value=0.019 Score=52.71 Aligned_cols=30 Identities=30% Similarity=0.471 Sum_probs=25.9
Q ss_pred CCeeEEEEeccCccchHHHHHHHHHhhhcC
Q 037291 167 DTVQIVGIWGMGGIGKTTLAEAIFDQFTGE 196 (349)
Q Consensus 167 ~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 196 (349)
....+|+|.|.+|+|||||+..+...++..
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 457899999999999999999998876543
No 470
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=95.84 E-value=0.026 Score=52.84 Aligned_cols=33 Identities=24% Similarity=0.175 Sum_probs=26.7
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcCCcce
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGS 200 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~ 200 (349)
....+.|.|+||.|||+|.+.+.+.++..-..+
T Consensus 21 ~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~ 53 (364)
T PF05970_consen 21 EGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKV 53 (364)
T ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhccccceE
Confidence 457788999999999999999999876643333
No 471
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=95.84 E-value=0.011 Score=58.43 Aligned_cols=48 Identities=17% Similarity=0.223 Sum_probs=33.7
Q ss_pred cccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhc
Q 037291 147 LVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTG 195 (349)
Q Consensus 147 ~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~ 195 (349)
.+-|.+-.+.|.++.... .....+|.|+|++|+||||+|+.++.++..
T Consensus 371 ~f~rpeV~~iL~~~~~~r-~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 371 WFSFPEVVAELRRTYPPR-HKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred hhcHHHHHHHHHHHhccc-cCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 344444444444443332 555678999999999999999999998754
No 472
>PRK04328 hypothetical protein; Provisional
Probab=95.84 E-value=0.029 Score=49.58 Aligned_cols=48 Identities=13% Similarity=0.115 Sum_probs=33.9
Q ss_pred hHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEE
Q 037291 156 QIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMS 204 (349)
Q Consensus 156 ~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 204 (349)
.|.++|..+ =....++.|.|++|+|||+||.+++......-..++|+.
T Consensus 11 ~LD~lL~GG-ip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 11 GMDEILYGG-IPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred hHHHHhcCC-CcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 344555433 234688899999999999999998876444445667776
No 473
>PRK06761 hypothetical protein; Provisional
Probab=95.84 E-value=0.011 Score=52.76 Aligned_cols=27 Identities=30% Similarity=0.486 Sum_probs=24.0
Q ss_pred eEEEEeccCccchHHHHHHHHHhhhcC
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQFTGE 196 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~~~~ 196 (349)
++|.|.|++|+||||+++.+++.+...
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~ 30 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQN 30 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcC
Confidence 578999999999999999999987543
No 474
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=95.83 E-value=0.024 Score=52.62 Aligned_cols=127 Identities=16% Similarity=0.200 Sum_probs=65.1
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcC----Cc---ceEEEE-------eccccccCCCChHHHHHHHHHHhhc----
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGE----FD---GSCFMS-------DVRRNSETGGGLEHLQKEMLSTILS---- 229 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~----f~---~~~~~~-------~~~~~~~~~~~~~~l~~~ll~~~~~---- 229 (349)
..-++.|+|.+|.||||+.+.+.-..... |. +.+=+. ..++... .++-..++.++.+..+.
T Consensus 408 pGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep-~f~~~tilehl~s~tGD~~~A 486 (593)
T COG2401 408 PGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEP-EFGEVTILEHLRSKTGDLNAA 486 (593)
T ss_pred CCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCccccc-ccCchhHHHHHhhccCchhHH
Confidence 34688999999999999999987643221 11 000000 0011111 22223444444443322
Q ss_pred ---------cc-------ccc--cCCCchHHHHHHhCCCeEEEEEeCCCCh-h--HHHHHhcccCCC--CCCcEEEEEeC
Q 037291 230 ---------EK-------LEV--AGANIPHFTKERVWRMKVLIVLDDVNEV-G--QLEGLIGELDQF--GPGSRIVVTTR 286 (349)
Q Consensus 230 ---------~~-------~~~--~~~~~~~~~~~~l~~k~~LlVlDdv~~~-~--~~~~l~~~~~~~--~~gs~IIiTtR 286 (349)
.+ ... +.+.-...+.+.+.+++-+++.|.+... + ....+...+... ..|+.+++.|+
T Consensus 487 veILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvTh 566 (593)
T COG2401 487 VEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTH 566 (593)
T ss_pred HHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 11 111 0112224556677788889999988421 1 111122222111 24677777777
Q ss_pred ChhHHHhcC
Q 037291 287 DKGVLEKFR 295 (349)
Q Consensus 287 ~~~~~~~~~ 295 (349)
.+++.+.+.
T Consensus 567 rpEv~~AL~ 575 (593)
T COG2401 567 RPEVGNALR 575 (593)
T ss_pred CHHHHhccC
Confidence 788888776
No 475
>PRK14532 adenylate kinase; Provisional
Probab=95.83 E-value=0.0068 Score=50.99 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=20.0
Q ss_pred EEEeccCccchHHHHHHHHHhh
Q 037291 172 VGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 172 i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
|.|.|++|+||||+|+.+++++
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6789999999999999998765
No 476
>PRK05922 type III secretion system ATPase; Validated
Probab=95.83 E-value=0.04 Score=52.28 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=22.4
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
....++|.|..|+|||||.+.++...
T Consensus 156 ~GqrigI~G~nG~GKSTLL~~Ia~~~ 181 (434)
T PRK05922 156 KGQRIGVFSEPGSGKSSLLSTIAKGS 181 (434)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccC
Confidence 44678999999999999999988754
No 477
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.82 E-value=0.026 Score=47.27 Aligned_cols=118 Identities=16% Similarity=0.088 Sum_probs=61.6
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHHHhh----cccc--cccC-----
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTIL----SEKL--EVAG----- 236 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~----~~~~--~~~~----- 236 (349)
....|.|+|..|-||||.|..++-+...+=..+.++.-+.... ..+-...+..+ ..+. +... ...+
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~--~~GE~~~l~~l-~~v~~~~~g~~~~~~~~~~~e~~ 97 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAW--STGERNLLEFG-GGVEFHVMGTGFTWETQDRERDI 97 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCC--ccCHHHHHhcC-CCcEEEECCCCCcccCCCcHHHH
Confidence 3477889999999999999999887655433344444222111 11222222221 0000 0000 0000
Q ss_pred ---CCchHHHHHHhC-CCeEEEEEeCCC-----ChhHHHHHhcccCCCCCCcEEEEEeCCh
Q 037291 237 ---ANIPHFTKERVW-RMKVLIVLDDVN-----EVGQLEGLIGELDQFGPGSRIVVTTRDK 288 (349)
Q Consensus 237 ---~~~~~~~~~~l~-~k~~LlVlDdv~-----~~~~~~~l~~~~~~~~~gs~IIiTtR~~ 288 (349)
.......++.+. ++-=|||||++. ..-..+.+...+..-..+..||+|-|+.
T Consensus 98 ~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 98 AAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 111233344444 445699999994 2222334444443334577999999975
No 478
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=95.82 E-value=0.014 Score=47.72 Aligned_cols=27 Identities=33% Similarity=0.647 Sum_probs=24.2
Q ss_pred eEEEEeccCccchHHHHHHHHHhhhcC
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQFTGE 196 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~~~~ 196 (349)
++++|+|..|+|||||+..+...+...
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~ 28 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSAR 28 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 578999999999999999999987654
No 479
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=95.81 E-value=0.025 Score=47.64 Aligned_cols=25 Identities=32% Similarity=0.534 Sum_probs=22.6
Q ss_pred EEEEeccCccchHHHHHHHHHhhhc
Q 037291 171 IVGIWGMGGIGKTTLAEAIFDQFTG 195 (349)
Q Consensus 171 ~i~I~G~~GiGKTtLa~~~~~~~~~ 195 (349)
+|+|.|+.|+||||+++.+++.+..
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~ 26 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEA 26 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5889999999999999999998754
No 480
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=95.81 E-value=0.014 Score=49.92 Aligned_cols=29 Identities=28% Similarity=0.457 Sum_probs=25.7
Q ss_pred CCeeEEEEeccCccchHHHHHHHHHhhhc
Q 037291 167 DTVQIVGIWGMGGIGKTTLAEAIFDQFTG 195 (349)
Q Consensus 167 ~~~~~i~I~G~~GiGKTtLa~~~~~~~~~ 195 (349)
.++++|+++|..|+|||||...+.+....
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~ 48 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKD 48 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 47999999999999999999999987543
No 481
>PRK13768 GTPase; Provisional
Probab=95.81 E-value=0.013 Score=51.79 Aligned_cols=27 Identities=41% Similarity=0.493 Sum_probs=23.0
Q ss_pred eEEEEeccCccchHHHHHHHHHhhhcC
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQFTGE 196 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~~~~ 196 (349)
.++.|.|++|+||||++..+...+...
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~ 29 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQ 29 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhc
Confidence 578899999999999999998876543
No 482
>COG3910 Predicted ATPase [General function prediction only]
Probab=95.79 E-value=0.055 Score=44.94 Aligned_cols=56 Identities=21% Similarity=0.204 Sum_probs=33.6
Q ss_pred CCchHHHHHHhCCCeEEEEEeCCCC----hhHHHHHhcccCCCCCCcEEEEEeCChhHHHh
Q 037291 237 ANIPHFTKERVWRMKVLIVLDDVNE----VGQLEGLIGELDQFGPGSRIVVTTRDKGVLEK 293 (349)
Q Consensus 237 ~~~~~~~~~~l~~k~~LlVlDdv~~----~~~~~~l~~~~~~~~~gs~IIiTtR~~~~~~~ 293 (349)
+.....+.+++.++- +-|||.=+. ..|++-+...-.-...|+.|||.|.++-++..
T Consensus 134 Esf~~i~~~rf~~~G-iYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAi 193 (233)
T COG3910 134 ESFLAIFHNRFNGQG-IYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAI 193 (233)
T ss_pred hHHHHHHHHHhccCc-eEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeC
Confidence 555566667666554 567887642 23444433322223567999999998876543
No 483
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=95.79 E-value=0.044 Score=48.74 Aligned_cols=42 Identities=19% Similarity=0.281 Sum_probs=33.0
Q ss_pred chhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhh
Q 037291 152 SRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 152 ~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
.-+..|...+....+..+-+++++|.+|+||...++.+++.+
T Consensus 93 ~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~ 134 (344)
T KOG2170|consen 93 LVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENL 134 (344)
T ss_pred HHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHH
Confidence 345556666666645668899999999999999999999864
No 484
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=95.79 E-value=0.0081 Score=49.27 Aligned_cols=28 Identities=25% Similarity=0.392 Sum_probs=23.6
Q ss_pred eEEEEeccCccchHHHHHHHHHhhhcCC
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQFTGEF 197 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~~~~f 197 (349)
+.|.++||.|.||||+.+.+++.+.-.|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F 30 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPF 30 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCc
Confidence 4578999999999999999998775444
No 485
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.79 E-value=0.049 Score=52.49 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=23.3
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
..+++++|+.|+||||++..++..+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~ 281 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCV 281 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHH
Confidence 47999999999999999999998663
No 486
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=95.79 E-value=0.011 Score=52.11 Aligned_cols=26 Identities=31% Similarity=0.506 Sum_probs=22.7
Q ss_pred EEEEeccCccchHHHHHHHHHhhhcC
Q 037291 171 IVGIWGMGGIGKTTLAEAIFDQFTGE 196 (349)
Q Consensus 171 ~i~I~G~~GiGKTtLa~~~~~~~~~~ 196 (349)
+|+|.|.+|+||||+++.+.+.+...
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~ 26 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFARE 26 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 58999999999999999999877543
No 487
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=95.78 E-value=0.044 Score=48.63 Aligned_cols=90 Identities=19% Similarity=0.134 Sum_probs=48.9
Q ss_pred CeeEEEEeccCccchHHHH-HHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHHHhhccccc-----ccC---C-
Q 037291 168 TVQIVGIWGMGGIGKTTLA-EAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLE-----VAG---A- 237 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa-~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~-----~~~---~- 237 (349)
..+.++|.|.+|+|||+|| ..+.+.. .-+..|.+..+++- ......+...+...-...... .++ .
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~~--~~~v~~V~~~iGer---~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r 142 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQK--GKKVYCIYVAIGQK---ASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQ 142 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHhc--CCCeEEEEEecccc---hHHHHHHHHHHHhcCccceeEEEEeCCCCchhHH
Confidence 3577899999999999996 4455443 33455455444332 334555555554332111100 001 0
Q ss_pred ----CchHHHHHHh--CCCeEEEEEeCCCCh
Q 037291 238 ----NIPHFTKERV--WRMKVLIVLDDVNEV 262 (349)
Q Consensus 238 ----~~~~~~~~~l--~~k~~LlVlDdv~~~ 262 (349)
...-.+.+++ .++.+|+++||+...
T Consensus 143 ~~a~~~a~aiAE~fr~~G~~Vlvl~DslTr~ 173 (274)
T cd01132 143 YLAPYTGCAMGEYFMDNGKHALIIYDDLSKQ 173 (274)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEcChHHH
Confidence 0112223333 478999999999544
No 488
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=95.77 E-value=0.015 Score=52.97 Aligned_cols=25 Identities=40% Similarity=0.546 Sum_probs=21.2
Q ss_pred eEEEEeccCccchHHHHHHHHHhhh
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
+++.+.|-||+||||+|..++-...
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A 26 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALA 26 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHh
Confidence 5788999999999999988876543
No 489
>PLN02348 phosphoribulokinase
Probab=95.76 E-value=0.01 Score=55.24 Aligned_cols=29 Identities=28% Similarity=0.512 Sum_probs=25.8
Q ss_pred CCeeEEEEeccCccchHHHHHHHHHhhhc
Q 037291 167 DTVQIVGIWGMGGIGKTTLAEAIFDQFTG 195 (349)
Q Consensus 167 ~~~~~i~I~G~~GiGKTtLa~~~~~~~~~ 195 (349)
+...+|+|.|.+|+||||+|+.+.+.+..
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~ 75 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFGG 75 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 46789999999999999999999998753
No 490
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=95.76 E-value=0.12 Score=45.89 Aligned_cols=119 Identities=15% Similarity=0.099 Sum_probs=67.5
Q ss_pred CCCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHH
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQK 221 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 221 (349)
...+.|++-..- .++...+... ....+.+.++|++|+|||+-++.+++..- ..|+.. .+. .+....++.
T Consensus 69 ~~~~~~l~tkt~-r~~~~~~~~A-~k~g~l~~vyg~~g~gKt~a~~~y~~s~p-----~~~l~~---~~p-~~~a~~~i~ 137 (297)
T COG2842 69 KLAPDFLETKTV-RRIFFRTRPA-SKTGSLVVVYGYAGLGKTQAAKNYAPSNP-----NALLIE---ADP-SYTALVLIL 137 (297)
T ss_pred cccccccccchh-HhHhhhhhhh-hhcCceEEEeccccchhHHHHHhhcccCc-----cceeec---CCh-hhHHHHHHH
Confidence 345567665542 2233333332 33445888999999999999999988642 344431 232 444455555
Q ss_pred HHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCCh--hHHHHHhccc
Q 037291 222 EMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEV--GQLEGLIGEL 272 (349)
Q Consensus 222 ~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~ 272 (349)
.+...........-... ...+..++.+..=+++.|+.+.. ..++.+....
T Consensus 138 ~i~~~~~~~~~~~~~d~-~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~ 189 (297)
T COG2842 138 IICAAAFGATDGTINDL-TERLMIRLRDTVRLIIVDEADRLPYRALEELRRIH 189 (297)
T ss_pred HHHHHHhcccchhHHHH-HHHHHHHHccCcceeeeehhhccChHHHHHHHHHH
Confidence 55544443332221122 25556666888888999988654 3444444433
No 491
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.74 E-value=0.033 Score=51.10 Aligned_cols=49 Identities=16% Similarity=0.236 Sum_probs=33.5
Q ss_pred hhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCC------cceEEEE
Q 037291 155 EQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEF------DGSCFMS 204 (349)
Q Consensus 155 ~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~ 204 (349)
..+.++|... -....++-|+|++|+|||++|.+++....... ..++|+.
T Consensus 89 ~~lD~~l~GG-i~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~ 143 (317)
T PRK04301 89 KELDELLGGG-IETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYID 143 (317)
T ss_pred HHHHHHhcCC-ccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEe
Confidence 3444555432 23468889999999999999999987643211 3567776
No 492
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=95.73 E-value=0.038 Score=50.59 Aligned_cols=103 Identities=22% Similarity=0.360 Sum_probs=63.3
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHHHhhcccc--------cccC---
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKL--------EVAG--- 236 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~--------~~~~--- 236 (349)
...-++|.|-+|+|||-|.+++.+.+..+.........+++-+. .-.+++.++...-..... +.+.
T Consensus 146 kGgKiGLFGGAGVGKTVl~~ELI~Nia~~h~g~SVFaGvGERtR---EGndLy~Em~es~vl~ktalv~gQMNEpPGaR~ 222 (468)
T COG0055 146 KGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERTR---EGNDLYHEMKESGVLDKTALVFGQMNEPPGARM 222 (468)
T ss_pred cCceeeeeccCCccceeeHHHHHHHHHHHcCCeEEEEecccccc---chHHHHHHHHhcCCCCceeEEEeecCCCCccee
Confidence 34678999999999999999999998877776666666666543 345566666544221111 0011
Q ss_pred --CCchHHHHHHhC---CCeEEEEEeCCCCh----hHHHHHhcccC
Q 037291 237 --ANIPHFTKERVW---RMKVLIVLDDVNEV----GQLEGLIGELD 273 (349)
Q Consensus 237 --~~~~~~~~~~l~---~k~~LlVlDdv~~~----~~~~~l~~~~~ 273 (349)
.-.--.+.++++ ++.+||.+||+... .+...++...+
T Consensus 223 RValtGlT~AEyfRD~~gqdVLlFIDNIfRftQAGsEVSalLGr~P 268 (468)
T COG0055 223 RVALTGLTMAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRMP 268 (468)
T ss_pred eehhhhhhHHHHhhcccCCeEEEEehhhhHHhhcchHHHHHhccCc
Confidence 111122344444 56899999999533 23455555444
No 493
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=95.73 E-value=0.0088 Score=49.84 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=22.4
Q ss_pred eEEEEeccCccchHHHHHHHHHhhh
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
.+++|+|++|.|||||++.++....
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999999998754
No 494
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=95.72 E-value=0.0086 Score=54.39 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=21.5
Q ss_pred eEEEEeccCccchHHHHHHHHHhh
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
.+|.+.|++|+||||+|+.+.+++
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 578889999999999999998865
No 495
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.72 E-value=0.013 Score=51.36 Aligned_cols=39 Identities=21% Similarity=0.330 Sum_probs=29.5
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEecc
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVR 207 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~ 207 (349)
....|.++||+|.||||..+.++.++...+.. -|+.|+.
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~p-pYviNLD 56 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKTP-PYVINLD 56 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccCC-CeEEeCC
Confidence 45677889999999999999999988766553 3444443
No 496
>PLN02318 phosphoribulokinase/uridine kinase
Probab=95.71 E-value=0.012 Score=57.42 Aligned_cols=28 Identities=32% Similarity=0.629 Sum_probs=24.8
Q ss_pred CCCeeEEEEeccCccchHHHHHHHHHhh
Q 037291 166 SDTVQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 166 ~~~~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
.++..+|+|.|++|.||||||+.+...+
T Consensus 62 ~~~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 62 NDGIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred CCCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 4567899999999999999999998764
No 497
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.71 E-value=0.039 Score=51.36 Aligned_cols=35 Identities=29% Similarity=0.372 Sum_probs=29.5
Q ss_pred eEEEEeccCccchHHHHHHHHHhh--hcCCcceEEEE
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQF--TGEFDGSCFMS 204 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~--~~~f~~~~~~~ 204 (349)
.++.|.|.+|.|||.||-.++.++ ........++.
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~ 38 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLC 38 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEE
Confidence 578899999999999999999988 55566666665
No 498
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=95.69 E-value=0.012 Score=55.78 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=22.2
Q ss_pred eEEEEeccCccchHHHHHHHHHhhh
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
..+.++|++|+|||+||+.++..+.
T Consensus 109 ~~iLl~Gp~GtGKT~lAr~lA~~l~ 133 (412)
T PRK05342 109 SNILLIGPTGSGKTLLAQTLARILD 133 (412)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHhC
Confidence 5688999999999999999997653
No 499
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.68 E-value=0.033 Score=49.34 Aligned_cols=65 Identities=22% Similarity=0.195 Sum_probs=38.4
Q ss_pred hhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhh--cC----CcceEEEEeccccccCCCChHHHHHHHHHH
Q 037291 155 EQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFT--GE----FDGSCFMSDVRRNSETGGGLEHLQKEMLST 226 (349)
Q Consensus 155 ~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~--~~----f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 226 (349)
..|.++|..+ -....+.=|+|++|+|||+||.+++-... .. =..++|++ ... .+...++. +++.+
T Consensus 25 ~~lD~~L~GG-i~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyid----Te~-~f~~~Rl~-~i~~~ 95 (256)
T PF08423_consen 25 KSLDELLGGG-IPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYID----TEG-TFSPERLQ-QIAER 95 (256)
T ss_dssp HHHHHHTTSS-EETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEE----SSS-SS-HHHHH-HHHHH
T ss_pred HHHHHhhCCC-CCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEe----CCC-CCCHHHHH-HHhhc
Confidence 3455666432 22357889999999999999998875432 11 12366665 222 44555543 45543
No 500
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.68 E-value=0.055 Score=48.21 Aligned_cols=129 Identities=13% Similarity=0.142 Sum_probs=70.3
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcCCcceEE-EEeccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHHH
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCF-MSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKER 246 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~-~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~ 246 (349)
....|.++|+.|+||||-...+.+.+-.++..++. +.+. ++-+...--+-+...............++..
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDP---------IE~vh~skkslI~QREvG~dT~sF~~aLraA 194 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDP---------IEYVHESKKSLINQREVGRDTLSFANALRAA 194 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCc---------hHhhhcchHhhhhHHHhcccHHHHHHHHHHH
Confidence 45889999999999997766666666555554433 3322 2211111111111111222223444778888
Q ss_pred hCCCeEEEEEeCCCChhHHHHHhcccCCCCCCcEEEEEeCChhHHHhcCCCCCcEEEcCCCCHHHH
Q 037291 247 VWRMKVLIVLDDVNEVGQLEGLIGELDQFGPGSRIVVTTRDKGVLEKFRGEEKKIHRVNGLEFEEA 312 (349)
Q Consensus 247 l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IIiTtR~~~~~~~~~~~~~~~~~l~~L~~~ea 312 (349)
|+.-+=+|++-.+.|.+.+..-+.. ...|.-|+-|-........ .+.++.+-|....+.
T Consensus 195 LReDPDVIlvGEmRD~ETi~~ALtA---AETGHLV~~TLHT~sA~~t----i~RiidvFp~~ek~~ 253 (353)
T COG2805 195 LREDPDVILVGEMRDLETIRLALTA---AETGHLVFGTLHTNSAAKT----IDRIIDVFPAEEKDQ 253 (353)
T ss_pred hhcCCCEEEEeccccHHHHHHHHHH---HhcCCEEEEecccccHHHH----HHHHHHhCChhhhHH
Confidence 8888989999989887765543322 1345555555443333332 234455555554443
Done!