Query 037291
Match_columns 349
No_of_seqs 284 out of 2658
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 18:18:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037291.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037291hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3jrn_A AT1G72930 protein; TIR 100.0 1E-40 3.4E-45 272.8 10.0 135 1-139 41-175 (176)
2 3ozi_A L6TR; plant TIR domain, 100.0 1.1E-39 3.9E-44 270.6 9.3 134 1-136 68-202 (204)
3 2a5y_B CED-4; apoptosis; HET: 100.0 2.5E-31 8.6E-36 259.9 19.0 190 148-349 131-334 (549)
4 3sfz_A APAF-1, apoptotic pepti 99.9 8.4E-27 2.9E-31 247.8 13.2 194 142-349 121-325 (1249)
5 1vt4_I APAF-1 related killer D 99.9 7.7E-26 2.6E-30 227.4 9.8 180 145-349 128-331 (1221)
6 1z6t_A APAF-1, apoptotic prote 99.9 1.6E-25 5.4E-30 221.0 9.6 188 142-349 121-325 (591)
7 3h16_A TIR protein; bacteria T 99.8 3.3E-22 1.1E-26 162.3 1.9 99 1-104 52-150 (154)
8 3ub2_A TOLL/interleukin-1 rece 99.6 1.4E-17 4.9E-22 133.1 0.0 99 1-102 43-145 (146)
9 1w5s_A Origin recognition comp 99.6 1.7E-15 5.8E-20 142.4 13.2 198 142-347 19-261 (412)
10 2qen_A Walker-type ATPase; unk 99.6 2.3E-15 7.9E-20 138.1 11.8 193 142-348 9-242 (350)
11 2fna_A Conserved hypothetical 99.6 8.7E-15 3E-19 134.6 12.3 192 142-348 10-246 (357)
12 1njg_A DNA polymerase III subu 99.5 1.5E-13 5.2E-18 118.9 13.2 192 142-348 20-224 (250)
13 2qby_B CDC6 homolog 3, cell di 99.5 1.8E-13 6.3E-18 127.3 14.2 191 144-346 19-239 (384)
14 2v1u_A Cell division control p 99.5 3E-13 1E-17 125.7 12.9 197 142-346 16-243 (387)
15 2qby_A CDC6 homolog 1, cell di 99.4 1.8E-13 6E-18 127.2 9.6 200 142-346 17-239 (386)
16 2chg_A Replication factor C sm 99.4 4.7E-13 1.6E-17 114.3 11.5 183 142-348 14-200 (226)
17 1fnn_A CDC6P, cell division co 99.4 1.7E-12 5.8E-17 120.8 15.2 199 143-346 15-241 (389)
18 1t3g_A X-linked interleukin-1 99.4 9E-14 3.1E-18 112.7 4.2 68 1-68 46-115 (159)
19 2j67_A TOLL like receptor 10; 99.4 1.9E-14 6.6E-19 118.6 -0.8 65 2-66 70-135 (178)
20 2js7_A Myeloid differentiation 99.4 1.6E-14 5.3E-19 117.3 -1.4 66 2-67 50-117 (160)
21 1fyx_A TOLL-like receptor 2; b 99.4 9.1E-15 3.1E-19 117.5 -2.9 67 2-68 40-108 (149)
22 1sxj_B Activator 1 37 kDa subu 99.3 1E-11 3.5E-16 112.5 10.4 181 142-347 18-204 (323)
23 1iqp_A RFCS; clamp loader, ext 99.2 2.2E-11 7.4E-16 110.6 9.4 181 142-347 22-207 (327)
24 2chq_A Replication factor C sm 99.1 3.7E-10 1.3E-14 101.9 12.7 180 142-347 14-199 (319)
25 1jr3_A DNA polymerase III subu 99.1 7.7E-10 2.6E-14 102.2 13.8 191 142-348 13-217 (373)
26 1hqc_A RUVB; extended AAA-ATPa 99.0 3E-09 1E-13 96.4 12.3 176 142-348 9-207 (324)
27 1jbk_A CLPB protein; beta barr 99.0 4E-09 1.4E-13 87.4 11.5 50 142-194 19-68 (195)
28 3bos_A Putative DNA replicatio 99.0 4.1E-10 1.4E-14 97.3 5.2 170 142-347 25-212 (242)
29 3te6_A Regulatory protein SIR3 99.0 4.9E-09 1.7E-13 94.2 12.1 165 146-320 21-211 (318)
30 3h4m_A Proteasome-activating n 98.9 2.1E-08 7.2E-13 89.1 15.5 158 142-322 14-203 (285)
31 2qz4_A Paraplegin; AAA+, SPG7, 98.9 5E-08 1.7E-12 85.4 17.7 180 143-345 4-214 (262)
32 1sxj_D Activator 1 41 kDa subu 98.9 5.4E-09 1.8E-13 95.8 11.8 192 142-347 34-230 (353)
33 2z4s_A Chromosomal replication 98.9 4.2E-09 1.4E-13 99.6 10.2 154 169-346 130-300 (440)
34 3d8b_A Fidgetin-like protein 1 98.9 6.5E-08 2.2E-12 89.0 18.0 196 119-344 63-286 (357)
35 3pvs_A Replication-associated 98.9 2.7E-08 9.2E-13 94.1 13.9 173 142-346 23-209 (447)
36 1sxj_E Activator 1 40 kDa subu 98.8 1.2E-08 4.2E-13 93.5 11.0 193 142-346 11-231 (354)
37 1d2n_A N-ethylmaleimide-sensit 98.8 1.7E-07 5.9E-12 82.7 17.5 174 144-345 32-230 (272)
38 3uk6_A RUVB-like 2; hexameric 98.8 7.3E-08 2.5E-12 88.8 15.5 192 144-346 43-297 (368)
39 1sxj_A Activator 1 95 kDa subu 98.8 2.7E-08 9.4E-13 96.0 13.0 186 142-345 36-245 (516)
40 1l8q_A Chromosomal replication 98.8 4.1E-08 1.4E-12 89.0 13.4 176 143-345 9-201 (324)
41 3eie_A Vacuolar protein sortin 98.8 1.2E-07 4.2E-12 85.8 16.3 174 143-344 16-219 (322)
42 3b9p_A CG5977-PA, isoform A; A 98.8 2.5E-07 8.5E-12 82.6 17.6 176 142-346 18-226 (297)
43 3u61_B DNA polymerase accessor 98.8 5.7E-08 1.9E-12 88.0 12.7 176 142-346 23-210 (324)
44 3syl_A Protein CBBX; photosynt 98.8 8.3E-08 2.8E-12 86.2 13.6 151 146-321 32-218 (309)
45 3j0a_A TOLL-like receptor 5; m 98.8 2.5E-09 8.5E-14 109.5 3.9 68 1-68 707-775 (844)
46 3pfi_A Holliday junction ATP-d 98.7 3.6E-08 1.2E-12 89.8 9.8 172 143-346 27-221 (338)
47 3cf0_A Transitional endoplasmi 98.7 3.3E-07 1.1E-11 82.1 14.3 155 144-320 14-199 (301)
48 1sxj_C Activator 1 40 kDa subu 98.7 1.8E-07 6.3E-12 85.3 12.5 179 143-345 23-205 (340)
49 1xwi_A SKD1 protein; VPS4B, AA 98.7 2.1E-06 7.1E-11 77.7 19.3 178 144-345 11-215 (322)
50 2qp9_X Vacuolar protein sortin 98.7 7.7E-07 2.6E-11 81.7 16.4 173 143-344 49-252 (355)
51 3vfd_A Spastin; ATPase, microt 98.7 4.8E-07 1.6E-11 84.1 15.2 178 143-345 113-318 (389)
52 2p65_A Hypothetical protein PF 98.7 9.4E-08 3.2E-12 78.7 9.3 51 142-195 19-69 (187)
53 1a5t_A Delta prime, HOLB; zinc 98.6 1.1E-06 3.7E-11 80.0 16.9 167 153-347 10-200 (334)
54 2zan_A Vacuolar protein sortin 98.6 5.8E-07 2E-11 85.0 15.0 180 142-344 131-336 (444)
55 3pxg_A Negative regulator of g 98.5 9.3E-07 3.2E-11 84.2 13.4 149 143-320 178-338 (468)
56 1qvr_A CLPB protein; coiled co 98.5 3.3E-07 1.1E-11 93.8 10.8 153 142-319 167-344 (854)
57 4b4t_L 26S protease subunit RP 98.5 4.7E-06 1.6E-10 78.0 16.3 155 144-321 180-366 (437)
58 3n70_A Transport activator; si 98.5 6.2E-07 2.1E-11 71.2 8.9 47 146-193 2-48 (145)
59 4b4t_J 26S protease regulatory 98.5 6.6E-06 2.3E-10 75.9 16.5 173 145-344 148-353 (405)
60 3hu3_A Transitional endoplasmi 98.4 3E-06 1E-10 80.8 13.9 155 145-321 204-386 (489)
61 1ofh_A ATP-dependent HSL prote 98.4 6E-07 2E-11 80.4 8.0 50 145-194 15-75 (310)
62 3ec2_A DNA replication protein 98.4 5.1E-07 1.7E-11 74.4 6.6 43 152-194 21-63 (180)
63 4b4t_H 26S protease regulatory 98.4 2.3E-05 7.9E-10 73.3 18.3 154 145-321 209-394 (467)
64 4fcw_A Chaperone protein CLPB; 98.4 4.5E-06 1.5E-10 74.8 13.2 52 145-196 17-74 (311)
65 4b4t_M 26S protease regulatory 98.4 5.5E-06 1.9E-10 77.4 13.7 154 144-320 180-365 (434)
66 1r6b_X CLPA protein; AAA+, N-t 98.4 2.8E-06 9.7E-11 85.8 12.7 156 142-320 183-362 (758)
67 2ce7_A Cell division protein F 98.3 1.2E-05 4.2E-10 76.2 15.4 155 144-320 15-199 (476)
68 2r62_A Cell division protease 98.3 4.1E-07 1.4E-11 80.0 4.9 157 142-320 8-196 (268)
69 2bjv_A PSP operon transcriptio 98.3 4.7E-06 1.6E-10 73.0 11.6 50 144-194 5-54 (265)
70 2w58_A DNAI, primosome compone 98.3 1.1E-06 3.6E-11 73.8 6.9 62 143-204 23-89 (202)
71 3pxi_A Negative regulator of g 98.3 4.7E-06 1.6E-10 84.2 12.6 149 143-320 178-338 (758)
72 1lv7_A FTSH; alpha/beta domain 98.3 6.1E-06 2.1E-10 72.0 11.7 155 143-320 10-195 (257)
73 4b4t_I 26S protease regulatory 98.3 1.4E-05 4.9E-10 74.0 14.6 154 145-321 182-367 (437)
74 2gno_A DNA polymerase III, gam 98.3 6.3E-06 2.1E-10 73.8 11.8 144 151-320 3-152 (305)
75 4b4t_K 26S protease regulatory 98.3 1.4E-05 4.7E-10 74.6 14.3 153 145-320 172-357 (428)
76 1ojl_A Transcriptional regulat 98.2 1.1E-05 3.7E-10 72.3 12.4 48 145-193 2-49 (304)
77 3t15_A Ribulose bisphosphate c 98.2 1.1E-05 3.8E-10 71.9 11.2 28 168-195 35-62 (293)
78 3co5_A Putative two-component 98.1 9.6E-07 3.3E-11 69.9 3.2 47 146-193 5-51 (143)
79 3pxi_A Negative regulator of g 98.1 2.2E-05 7.5E-10 79.3 13.4 153 145-320 491-675 (758)
80 2r44_A Uncharacterized protein 98.1 4.9E-06 1.7E-10 75.4 7.6 47 144-195 26-72 (331)
81 2c9o_A RUVB-like 1; hexameric 98.1 6E-05 2.1E-09 71.4 15.2 51 144-194 36-88 (456)
82 3cf2_A TER ATPase, transitiona 98.1 1.3E-05 4.5E-10 80.4 10.6 154 145-320 204-385 (806)
83 1in4_A RUVB, holliday junction 98.0 3.1E-05 1.1E-09 70.2 11.6 171 144-346 24-217 (334)
84 1ixz_A ATP-dependent metallopr 98.0 2.1E-05 7.2E-10 68.3 9.8 155 144-320 15-199 (254)
85 3m6a_A ATP-dependent protease 98.0 3.7E-05 1.3E-09 74.4 11.9 50 146-195 82-134 (543)
86 1iy2_A ATP-dependent metallopr 98.0 4.3E-05 1.5E-09 67.4 10.4 157 142-320 37-223 (278)
87 2dhr_A FTSH; AAA+ protein, hex 98.0 0.00016 5.6E-09 68.9 15.0 153 142-320 28-214 (499)
88 2kjq_A DNAA-related protein; s 97.9 1.7E-05 5.9E-10 63.1 6.3 36 169-204 36-71 (149)
89 1ypw_A Transitional endoplasmi 97.9 4.8E-05 1.6E-09 77.1 10.2 154 144-320 203-385 (806)
90 2x8a_A Nuclear valosin-contain 97.8 0.00011 3.9E-09 64.6 10.2 127 172-320 47-191 (274)
91 1r6b_X CLPA protein; AAA+, N-t 97.8 3.6E-05 1.2E-09 77.7 7.3 49 145-193 458-512 (758)
92 1um8_A ATP-dependent CLP prote 97.7 9.2E-05 3.1E-09 68.2 8.4 26 169-194 72-97 (376)
93 1qvr_A CLPB protein; coiled co 97.7 0.0002 7E-09 73.1 11.4 50 146-195 559-614 (854)
94 2qgz_A Helicase loader, putati 97.6 0.00017 5.8E-09 64.6 8.9 52 153-204 136-188 (308)
95 2cvh_A DNA repair and recombin 97.6 0.00016 5.6E-09 60.9 8.0 34 168-204 19-52 (220)
96 3cf2_A TER ATPase, transitiona 97.4 0.00015 5.1E-09 72.8 5.5 154 145-320 477-661 (806)
97 1ye8_A Protein THEP1, hypothet 97.4 0.0038 1.3E-07 51.0 12.9 24 171-194 2-25 (178)
98 2eyu_A Twitching motility prot 97.3 6.8E-05 2.3E-09 65.5 1.8 110 168-290 24-135 (261)
99 3jvv_A Twitching mobility prot 97.3 9.5E-05 3.2E-09 67.5 2.4 110 169-291 123-234 (356)
100 1jr3_D DNA polymerase III, del 97.3 0.0071 2.4E-07 54.6 14.9 162 156-347 8-180 (343)
101 1g5t_A COB(I)alamin adenosyltr 97.2 0.00081 2.8E-08 55.6 7.4 115 170-288 29-163 (196)
102 2w0m_A SSO2452; RECA, SSPF, un 97.2 0.00044 1.5E-08 58.6 6.0 36 169-204 23-58 (235)
103 2vhj_A Ntpase P4, P4; non- hyd 97.1 0.00043 1.5E-08 61.8 5.3 24 169-192 123-146 (331)
104 1u0j_A DNA replication protein 97.1 0.0016 5.5E-08 56.5 8.4 37 156-193 92-128 (267)
105 1rz3_A Hypothetical protein rb 97.1 0.00074 2.5E-08 56.3 5.9 44 151-194 4-47 (201)
106 1qhx_A CPT, protein (chloramph 97.0 0.00033 1.1E-08 56.9 3.1 25 170-194 4-28 (178)
107 3sr0_A Adenylate kinase; phosp 97.0 0.0011 3.9E-08 55.5 6.1 83 171-270 2-95 (206)
108 3kl4_A SRP54, signal recogniti 97.0 0.0085 2.9E-07 55.9 12.5 29 168-196 96-124 (433)
109 3dm5_A SRP54, signal recogniti 96.9 0.007 2.4E-07 56.5 11.5 29 168-196 99-127 (443)
110 2ewv_A Twitching motility prot 96.9 0.00042 1.4E-08 63.7 2.9 109 168-289 135-245 (372)
111 3kb2_A SPBC2 prophage-derived 96.9 0.00055 1.9E-08 55.1 3.4 25 170-194 2-26 (173)
112 2xxa_A Signal recognition part 96.9 0.028 9.4E-07 52.6 15.1 29 168-196 99-127 (433)
113 3hws_A ATP-dependent CLP prote 96.8 0.00068 2.3E-08 62.0 4.0 48 147-194 17-76 (363)
114 3umf_A Adenylate kinase; rossm 96.8 0.0014 4.7E-08 55.4 5.5 27 167-193 27-53 (217)
115 2orw_A Thymidine kinase; TMTK, 96.8 0.00038 1.3E-08 57.3 1.7 25 170-194 4-28 (184)
116 3trf_A Shikimate kinase, SK; a 96.8 0.00074 2.5E-08 55.3 3.3 25 169-193 5-29 (185)
117 1ex7_A Guanylate kinase; subst 96.7 0.00051 1.8E-08 56.6 2.1 28 170-197 2-29 (186)
118 3vaa_A Shikimate kinase, SK; s 96.7 0.00086 2.9E-08 55.7 3.6 25 169-193 25-49 (199)
119 3c8u_A Fructokinase; YP_612366 96.7 0.0013 4.4E-08 55.1 4.7 28 167-194 20-47 (208)
120 3nbx_X ATPase RAVA; AAA+ ATPas 96.7 0.00074 2.5E-08 64.4 3.4 45 145-194 22-66 (500)
121 1v5w_A DMC1, meiotic recombina 96.7 0.0059 2E-07 55.3 9.2 49 155-204 109-163 (343)
122 3lw7_A Adenylate kinase relate 96.7 0.0008 2.7E-08 54.2 3.1 23 170-193 2-24 (179)
123 1nks_A Adenylate kinase; therm 96.7 0.0017 5.8E-08 53.2 5.1 26 170-195 2-27 (194)
124 1uj2_A Uridine-cytidine kinase 96.7 0.001 3.4E-08 57.6 3.7 28 167-194 20-47 (252)
125 3uie_A Adenylyl-sulfate kinase 96.7 0.0018 6.1E-08 53.8 5.1 27 168-194 24-50 (200)
126 2b8t_A Thymidine kinase; deoxy 96.6 0.0015 5.1E-08 55.4 4.4 109 168-287 11-125 (223)
127 1sky_E F1-ATPase, F1-ATP synth 96.6 0.004 1.4E-07 58.4 7.5 32 170-201 152-183 (473)
128 1odf_A YGR205W, hypothetical 3 96.6 0.0019 6.5E-08 57.1 5.1 29 166-194 28-56 (290)
129 1ly1_A Polynucleotide kinase; 96.6 0.0011 3.9E-08 53.7 3.4 22 170-191 3-24 (181)
130 1zuh_A Shikimate kinase; alpha 96.6 0.0012 4.1E-08 53.1 3.4 27 168-194 6-32 (168)
131 1kag_A SKI, shikimate kinase I 96.6 0.0009 3.1E-08 54.0 2.7 25 170-194 5-29 (173)
132 1j8m_F SRP54, signal recogniti 96.6 0.0068 2.3E-07 53.7 8.6 35 169-203 98-132 (297)
133 3hr8_A Protein RECA; alpha and 96.6 0.0077 2.6E-07 54.7 9.0 52 153-204 45-96 (356)
134 2rhm_A Putative kinase; P-loop 96.6 0.0015 5.2E-08 53.6 3.8 25 169-193 5-29 (193)
135 1zu4_A FTSY; GTPase, signal re 96.6 0.0087 3E-07 53.6 9.0 29 168-196 104-132 (320)
136 3e70_C DPA, signal recognition 96.5 0.012 4E-07 53.0 9.8 30 167-196 127-156 (328)
137 1g8p_A Magnesium-chelatase 38 96.5 0.001 3.4E-08 60.3 2.8 49 143-194 22-70 (350)
138 1zp6_A Hypothetical protein AT 96.5 0.0013 4.4E-08 54.0 3.3 24 169-192 9-32 (191)
139 1kht_A Adenylate kinase; phosp 96.5 0.0014 4.7E-08 53.7 3.4 26 170-195 4-29 (192)
140 1kgd_A CASK, peripheral plasma 96.5 0.0013 4.5E-08 53.7 3.1 26 169-194 5-30 (180)
141 1vma_A Cell division protein F 96.5 0.0082 2.8E-07 53.4 8.5 29 168-196 103-131 (306)
142 3t61_A Gluconokinase; PSI-biol 96.5 0.0011 3.7E-08 55.2 2.6 25 169-193 18-42 (202)
143 1knq_A Gluconate kinase; ALFA/ 96.5 0.0019 6.5E-08 52.3 4.0 26 168-193 7-32 (175)
144 3iij_A Coilin-interacting nucl 96.5 0.001 3.5E-08 54.2 2.4 25 169-193 11-35 (180)
145 2yvu_A Probable adenylyl-sulfa 96.5 0.0031 1.1E-07 51.6 5.3 28 168-195 12-39 (186)
146 3tlx_A Adenylate kinase 2; str 96.5 0.0022 7.5E-08 55.2 4.5 26 168-193 28-53 (243)
147 3tau_A Guanylate kinase, GMP k 96.5 0.0016 5.6E-08 54.5 3.6 28 168-195 7-34 (208)
148 2c95_A Adenylate kinase 1; tra 96.5 0.0018 6.2E-08 53.3 3.8 25 169-193 9-33 (196)
149 3io5_A Recombination and repai 96.5 0.011 3.6E-07 52.7 8.8 34 171-204 30-65 (333)
150 1xjc_A MOBB protein homolog; s 96.5 0.0027 9.2E-08 51.3 4.6 29 168-196 3-31 (169)
151 3bh0_A DNAB-like replicative h 96.5 0.011 3.7E-07 52.9 9.0 52 151-204 52-103 (315)
152 3a00_A Guanylate kinase, GMP k 96.5 0.0013 4.5E-08 54.0 2.8 28 170-197 2-29 (186)
153 2ze6_A Isopentenyl transferase 96.4 0.0018 6.1E-08 56.1 3.6 25 170-194 2-26 (253)
154 2iyv_A Shikimate kinase, SK; t 96.4 0.0013 4.4E-08 53.8 2.6 25 170-194 3-27 (184)
155 1ukz_A Uridylate kinase; trans 96.4 0.002 6.8E-08 53.5 3.8 26 168-193 14-39 (203)
156 4eun_A Thermoresistant glucoki 96.4 0.0018 6E-08 53.9 3.5 26 168-193 28-53 (200)
157 1tev_A UMP-CMP kinase; ploop, 96.4 0.002 6.8E-08 52.9 3.6 25 169-193 3-27 (196)
158 2qor_A Guanylate kinase; phosp 96.4 0.0014 4.8E-08 54.7 2.7 27 168-194 11-37 (204)
159 1via_A Shikimate kinase; struc 96.4 0.0016 5.3E-08 52.8 2.9 24 171-194 6-29 (175)
160 3cm0_A Adenylate kinase; ATP-b 96.4 0.0022 7.6E-08 52.3 3.8 25 169-193 4-28 (186)
161 2jaq_A Deoxyguanosine kinase; 96.4 0.0019 6.6E-08 53.5 3.4 24 171-194 2-25 (205)
162 1y63_A LMAJ004144AAA protein; 96.4 0.0023 7.9E-08 52.4 3.8 24 169-192 10-33 (184)
163 4a1f_A DNAB helicase, replicat 96.4 0.011 3.8E-07 53.3 8.5 70 147-225 26-95 (338)
164 2vli_A Antibiotic resistance p 96.3 0.0016 5.3E-08 53.1 2.6 26 169-194 5-30 (183)
165 1nn5_A Similar to deoxythymidy 96.3 0.0031 1.1E-07 52.7 4.5 28 169-196 9-36 (215)
166 2pt7_A CAG-ALFA; ATPase, prote 96.3 0.0025 8.7E-08 57.5 4.1 106 170-290 172-277 (330)
167 1e6c_A Shikimate kinase; phosp 96.3 0.0017 5.8E-08 52.3 2.7 25 170-194 3-27 (173)
168 2bwj_A Adenylate kinase 5; pho 96.3 0.002 6.8E-08 53.2 3.2 25 170-194 13-37 (199)
169 2ga8_A Hypothetical 39.9 kDa p 96.3 0.0024 8.1E-08 57.8 3.8 31 167-197 22-52 (359)
170 3tr0_A Guanylate kinase, GMP k 96.3 0.0022 7.5E-08 53.2 3.4 25 169-193 7-31 (205)
171 1cke_A CK, MSSA, protein (cyti 96.3 0.0022 7.4E-08 54.3 3.4 24 170-193 6-29 (227)
172 2pt5_A Shikimate kinase, SK; a 96.3 0.0024 8.3E-08 51.1 3.5 24 171-194 2-25 (168)
173 2cdn_A Adenylate kinase; phosp 96.3 0.0026 9E-08 52.7 3.8 26 169-194 20-45 (201)
174 2plr_A DTMP kinase, probable t 96.3 0.0024 8.4E-08 53.2 3.6 27 170-196 5-31 (213)
175 1aky_A Adenylate kinase; ATP:A 96.3 0.0024 8E-08 53.9 3.5 26 169-194 4-29 (220)
176 3asz_A Uridine kinase; cytidin 96.3 0.0026 9E-08 53.1 3.7 27 168-194 5-31 (211)
177 1uf9_A TT1252 protein; P-loop, 96.3 0.0025 8.5E-08 52.7 3.5 26 167-192 6-31 (203)
178 1qf9_A UMP/CMP kinase, protein 96.3 0.0025 8.6E-08 52.2 3.5 25 169-193 6-30 (194)
179 3ney_A 55 kDa erythrocyte memb 96.3 0.0025 8.4E-08 52.9 3.3 27 168-194 18-44 (197)
180 2j41_A Guanylate kinase; GMP, 96.3 0.0025 8.4E-08 53.0 3.4 25 169-193 6-30 (207)
181 2bdt_A BH3686; alpha-beta prot 96.3 0.0025 8.6E-08 52.3 3.4 22 170-191 3-24 (189)
182 2pbr_A DTMP kinase, thymidylat 96.2 0.0026 8.9E-08 52.2 3.4 24 171-194 2-25 (195)
183 1gvn_B Zeta; postsegregational 96.2 0.003 1E-07 55.8 3.9 26 168-193 32-57 (287)
184 1tue_A Replication protein E1; 96.2 0.0041 1.4E-07 51.7 4.4 39 154-194 45-83 (212)
185 3fb4_A Adenylate kinase; psych 96.2 0.0029 9.8E-08 53.1 3.4 23 171-193 2-24 (216)
186 2if2_A Dephospho-COA kinase; a 96.2 0.0026 8.7E-08 52.9 3.0 22 170-191 2-23 (204)
187 3a4m_A L-seryl-tRNA(SEC) kinas 96.1 0.0032 1.1E-07 54.7 3.6 26 169-194 4-29 (260)
188 2qt1_A Nicotinamide riboside k 96.1 0.0029 1E-07 52.7 3.3 26 168-193 20-45 (207)
189 2wwf_A Thymidilate kinase, put 96.1 0.0029 1E-07 52.8 3.3 28 169-196 10-37 (212)
190 2dr3_A UPF0273 protein PH0284; 96.1 0.0042 1.4E-07 53.0 4.3 36 169-204 23-58 (247)
191 2z0h_A DTMP kinase, thymidylat 96.1 0.0033 1.1E-07 51.7 3.4 25 171-195 2-26 (197)
192 2grj_A Dephospho-COA kinase; T 96.1 0.0033 1.1E-07 52.0 3.3 26 168-193 11-36 (192)
193 2wsm_A Hydrogenase expression/ 96.1 0.0069 2.4E-07 50.8 5.4 41 153-196 17-57 (221)
194 1jjv_A Dephospho-COA kinase; P 96.1 0.0031 1E-07 52.5 3.2 22 170-191 3-24 (206)
195 2bbw_A Adenylate kinase 4, AK4 96.1 0.0032 1.1E-07 54.1 3.3 25 169-193 27-51 (246)
196 3dl0_A Adenylate kinase; phosp 96.1 0.0031 1.1E-07 52.9 3.2 23 171-193 2-24 (216)
197 2px0_A Flagellar biosynthesis 96.1 0.012 4.3E-07 52.0 7.2 27 168-194 104-130 (296)
198 1gtv_A TMK, thymidylate kinase 96.1 0.0024 8.1E-08 53.4 2.3 24 171-194 2-25 (214)
199 3ice_A Transcription terminati 96.0 0.017 5.7E-07 52.8 7.9 28 168-195 173-200 (422)
200 3tqc_A Pantothenate kinase; bi 96.0 0.006 2.1E-07 54.6 5.0 29 166-194 89-117 (321)
201 2p5t_B PEZT; postsegregational 96.0 0.004 1.4E-07 53.8 3.7 27 168-194 31-57 (253)
202 3k1j_A LON protease, ATP-depen 96.0 0.0047 1.6E-07 60.5 4.7 48 144-196 40-87 (604)
203 4a74_A DNA repair and recombin 96.0 0.0067 2.3E-07 51.1 5.0 26 168-193 24-49 (231)
204 4e22_A Cytidylate kinase; P-lo 96.0 0.0037 1.3E-07 54.0 3.3 25 169-193 27-51 (252)
205 1zd8_A GTP:AMP phosphotransfer 96.0 0.0035 1.2E-07 53.1 3.1 25 169-193 7-31 (227)
206 2hf9_A Probable hydrogenase ni 96.0 0.012 4E-07 49.6 6.3 29 168-196 37-65 (226)
207 1lvg_A Guanylate kinase, GMP k 96.0 0.003 1E-07 52.5 2.5 25 170-194 5-29 (198)
208 4gp7_A Metallophosphoesterase; 96.0 0.0035 1.2E-07 50.7 2.9 23 168-190 8-30 (171)
209 2pez_A Bifunctional 3'-phospho 95.9 0.005 1.7E-07 50.0 3.7 26 169-194 5-30 (179)
210 2v54_A DTMP kinase, thymidylat 95.9 0.0041 1.4E-07 51.5 3.3 25 169-193 4-28 (204)
211 1zak_A Adenylate kinase; ATP:A 95.9 0.0035 1.2E-07 52.9 2.9 26 169-194 5-30 (222)
212 2jeo_A Uridine-cytidine kinase 95.9 0.005 1.7E-07 52.9 3.8 26 168-193 24-49 (245)
213 1a7j_A Phosphoribulokinase; tr 95.9 0.0031 1.1E-07 55.8 2.5 27 168-194 4-30 (290)
214 1n0w_A DNA repair protein RAD5 95.9 0.007 2.4E-07 51.5 4.7 49 155-204 11-65 (243)
215 1rj9_A FTSY, signal recognitio 95.9 0.0078 2.7E-07 53.5 5.1 29 168-196 101-129 (304)
216 3ake_A Cytidylate kinase; CMP 95.9 0.0048 1.6E-07 51.2 3.4 24 171-194 4-27 (208)
217 1m7g_A Adenylylsulfate kinase; 95.9 0.0057 2E-07 51.1 3.9 27 168-194 24-50 (211)
218 1g41_A Heat shock protein HSLU 95.9 0.006 2E-07 57.1 4.3 28 169-196 50-77 (444)
219 3aez_A Pantothenate kinase; tr 95.8 0.005 1.7E-07 55.0 3.5 28 167-194 88-115 (312)
220 1znw_A Guanylate kinase, GMP k 95.8 0.0045 1.6E-07 51.6 3.1 26 168-193 19-44 (207)
221 3p32_A Probable GTPase RV1496/ 95.8 0.015 5E-07 53.0 6.7 30 166-195 76-105 (355)
222 3dzd_A Transcriptional regulat 95.8 0.042 1.4E-06 50.2 9.6 48 145-193 129-176 (368)
223 1z6g_A Guanylate kinase; struc 95.8 0.0041 1.4E-07 52.5 2.5 25 169-193 23-47 (218)
224 3nwj_A ATSK2; P loop, shikimat 95.8 0.004 1.4E-07 53.8 2.5 25 170-194 49-73 (250)
225 3e1s_A Exodeoxyribonuclease V, 95.8 0.036 1.2E-06 53.8 9.5 34 170-203 205-238 (574)
226 1e4v_A Adenylate kinase; trans 95.7 0.0055 1.9E-07 51.4 3.3 23 171-193 2-24 (214)
227 2xb4_A Adenylate kinase; ATP-b 95.7 0.0057 2E-07 51.7 3.4 23 171-193 2-24 (223)
228 3fwy_A Light-independent proto 95.7 0.0096 3.3E-07 53.2 5.0 36 168-203 47-82 (314)
229 1q57_A DNA primase/helicase; d 95.7 0.079 2.7E-06 50.5 11.7 37 168-204 241-278 (503)
230 1s96_A Guanylate kinase, GMP k 95.7 0.0053 1.8E-07 51.9 3.1 27 168-194 15-41 (219)
231 3d3q_A TRNA delta(2)-isopenten 95.7 0.0059 2E-07 55.0 3.5 25 170-194 8-32 (340)
232 2f6r_A COA synthase, bifunctio 95.7 0.006 2E-07 53.6 3.5 25 167-191 73-97 (281)
233 3r20_A Cytidylate kinase; stru 95.7 0.0059 2E-07 52.0 3.4 25 169-193 9-33 (233)
234 1np6_A Molybdopterin-guanine d 95.7 0.01 3.4E-07 48.2 4.6 27 169-195 6-32 (174)
235 3be4_A Adenylate kinase; malar 95.7 0.0059 2E-07 51.4 3.2 24 170-193 6-29 (217)
236 1vht_A Dephospho-COA kinase; s 95.7 0.0071 2.4E-07 50.8 3.7 23 169-191 4-26 (218)
237 1sq5_A Pantothenate kinase; P- 95.7 0.01 3.4E-07 52.9 4.8 28 167-194 78-105 (308)
238 2r6a_A DNAB helicase, replicat 95.7 0.037 1.3E-06 52.1 8.9 54 149-204 185-239 (454)
239 1ak2_A Adenylate kinase isoenz 95.6 0.0072 2.4E-07 51.4 3.6 26 169-194 16-41 (233)
240 1htw_A HI0065; nucleotide-bind 95.6 0.0077 2.6E-07 48.1 3.5 26 168-193 32-57 (158)
241 1ny5_A Transcriptional regulat 95.6 0.15 5E-06 46.9 12.7 47 145-192 137-183 (387)
242 2q6t_A DNAB replication FORK h 95.6 0.037 1.3E-06 51.9 8.8 54 149-204 182-236 (444)
243 3lnc_A Guanylate kinase, GMP k 95.6 0.0045 1.5E-07 52.6 2.2 25 169-193 27-52 (231)
244 1fx0_B ATP synthase beta chain 95.6 0.013 4.4E-07 55.2 5.4 54 168-225 164-218 (498)
245 3b9q_A Chloroplast SRP recepto 95.6 0.011 3.9E-07 52.4 4.9 28 168-195 99-126 (302)
246 3crm_A TRNA delta(2)-isopenten 95.6 0.0069 2.3E-07 54.2 3.4 24 170-193 6-29 (323)
247 2ehv_A Hypothetical protein PH 95.6 0.0088 3E-07 51.1 4.0 23 169-191 30-52 (251)
248 2f1r_A Molybdopterin-guanine d 95.6 0.0053 1.8E-07 49.7 2.4 26 170-195 3-28 (171)
249 3exa_A TRNA delta(2)-isopenten 95.6 0.0071 2.4E-07 53.7 3.4 25 169-193 3-27 (322)
250 2i3b_A HCR-ntpase, human cance 95.5 0.0069 2.4E-07 49.9 2.9 25 170-194 2-26 (189)
251 3a8t_A Adenylate isopentenyltr 95.5 0.0069 2.4E-07 54.4 3.0 26 169-194 40-65 (339)
252 3foz_A TRNA delta(2)-isopenten 95.5 0.0096 3.3E-07 52.8 3.9 26 168-193 9-34 (316)
253 4akg_A Glutathione S-transfera 95.5 0.13 4.3E-06 58.4 13.5 148 157-341 1260-1452(2695)
254 2zts_A Putative uncharacterize 95.4 0.011 3.8E-07 50.4 4.1 36 169-204 30-66 (251)
255 2z43_A DNA repair and recombin 95.4 0.026 8.9E-07 50.6 6.6 49 155-204 94-148 (324)
256 2zr9_A Protein RECA, recombina 95.4 0.012 4.1E-07 53.4 4.3 52 152-204 44-96 (349)
257 2ck3_D ATP synthase subunit be 95.4 0.058 2E-06 50.6 8.9 55 168-226 152-207 (482)
258 3bgw_A DNAB-like replicative h 95.3 0.035 1.2E-06 52.1 7.5 54 149-204 179-232 (444)
259 1u94_A RECA protein, recombina 95.3 0.013 4.5E-07 53.3 4.4 53 151-204 45-98 (356)
260 1ltq_A Polynucleotide kinase; 95.3 0.0094 3.2E-07 52.7 3.4 23 170-192 3-25 (301)
261 1cr0_A DNA primase/helicase; R 95.3 0.014 4.9E-07 51.5 4.5 37 168-204 34-71 (296)
262 2qmh_A HPR kinase/phosphorylas 95.3 0.0093 3.2E-07 49.3 3.0 24 170-193 35-58 (205)
263 3zvl_A Bifunctional polynucleo 95.3 0.0087 3E-07 55.7 3.2 26 168-193 257-282 (416)
264 2og2_A Putative signal recogni 95.3 0.016 5.5E-07 52.7 4.8 28 168-195 156-183 (359)
265 2j9r_A Thymidine kinase; TK1, 95.2 0.058 2E-06 45.1 7.7 110 168-288 27-138 (214)
266 4edh_A DTMP kinase, thymidylat 95.2 0.041 1.4E-06 46.1 6.8 28 169-196 6-33 (213)
267 1puj_A YLQF, conserved hypothe 95.2 0.26 9E-06 43.1 12.3 36 12-48 13-48 (282)
268 2r8r_A Sensor protein; KDPD, P 95.2 0.019 6.5E-07 48.5 4.6 27 170-196 7-33 (228)
269 1nlf_A Regulatory protein REPA 95.2 0.017 6E-07 50.4 4.7 27 169-195 30-56 (279)
270 3b85_A Phosphate starvation-in 95.2 0.009 3.1E-07 50.0 2.7 23 170-192 23-45 (208)
271 2onk_A Molybdate/tungstate ABC 95.2 0.01 3.6E-07 50.8 3.1 24 168-192 24-47 (240)
272 1yrb_A ATP(GTP)binding protein 95.2 0.026 8.7E-07 48.6 5.7 27 168-194 13-39 (262)
273 2ged_A SR-beta, signal recogni 95.2 0.012 4.2E-07 47.9 3.4 25 168-192 47-71 (193)
274 1q3t_A Cytidylate kinase; nucl 95.2 0.013 4.4E-07 49.9 3.7 27 167-193 14-40 (236)
275 3tif_A Uncharacterized ABC tra 95.1 0.0089 3.1E-07 51.0 2.5 24 168-191 30-53 (235)
276 4eaq_A DTMP kinase, thymidylat 95.1 0.015 5.3E-07 49.3 3.9 28 168-195 25-52 (229)
277 2pcj_A ABC transporter, lipopr 95.1 0.009 3.1E-07 50.6 2.4 23 169-191 30-52 (224)
278 2yhs_A FTSY, cell division pro 95.1 0.019 6.6E-07 54.2 4.8 35 168-203 292-326 (503)
279 1t9h_A YLOQ, probable GTPase E 95.0 0.081 2.8E-06 46.9 8.4 23 170-192 174-196 (307)
280 3eph_A TRNA isopentenyltransfe 95.0 0.014 4.8E-07 53.7 3.5 24 170-193 3-26 (409)
281 2v3c_C SRP54, signal recogniti 95.0 0.013 4.6E-07 54.7 3.4 28 168-195 98-125 (432)
282 2cbz_A Multidrug resistance-as 95.0 0.011 3.7E-07 50.6 2.5 26 168-193 30-55 (237)
283 1ls1_A Signal recognition part 94.9 0.025 8.6E-07 50.0 4.9 29 168-196 97-125 (295)
284 1cp2_A CP2, nitrogenase iron p 94.9 0.027 9.1E-07 48.8 5.1 34 170-203 2-35 (269)
285 1svm_A Large T antigen; AAA+ f 94.9 0.02 6.8E-07 52.5 4.3 27 167-193 167-193 (377)
286 3l0o_A Transcription terminati 94.9 0.071 2.4E-06 48.7 7.8 28 168-195 174-201 (427)
287 2d2e_A SUFC protein; ABC-ATPas 94.9 0.014 4.7E-07 50.4 3.0 24 169-192 29-52 (250)
288 1g8f_A Sulfate adenylyltransfe 94.9 0.02 6.8E-07 54.6 4.4 28 168-195 394-421 (511)
289 1oix_A RAS-related protein RAB 94.9 0.014 4.9E-07 47.7 3.0 24 169-192 29-52 (191)
290 2dyk_A GTP-binding protein; GT 94.9 0.017 5.9E-07 45.3 3.4 23 170-192 2-24 (161)
291 2ocp_A DGK, deoxyguanosine kin 94.9 0.016 5.4E-07 49.5 3.4 26 169-194 2-27 (241)
292 1b0u_A Histidine permease; ABC 94.9 0.012 4E-07 51.2 2.5 25 168-192 31-55 (262)
293 3gfo_A Cobalt import ATP-bindi 94.8 0.012 4E-07 51.6 2.5 23 169-191 34-56 (275)
294 3end_A Light-independent proto 94.8 0.028 9.5E-07 49.8 5.0 36 168-203 40-75 (307)
295 2zu0_C Probable ATP-dependent 94.8 0.015 5E-07 50.7 3.0 25 168-192 45-69 (267)
296 1ji0_A ABC transporter; ATP bi 94.8 0.013 4.3E-07 50.3 2.5 23 169-191 32-54 (240)
297 1mv5_A LMRA, multidrug resista 94.8 0.015 5E-07 50.0 2.9 24 168-191 27-50 (243)
298 1g6h_A High-affinity branched- 94.8 0.013 4.3E-07 50.8 2.5 23 169-191 33-55 (257)
299 4g1u_C Hemin import ATP-bindin 94.8 0.013 4.3E-07 51.1 2.5 23 169-191 37-59 (266)
300 1pzn_A RAD51, DNA repair and r 94.8 0.015 5.2E-07 52.7 3.2 26 168-193 130-155 (349)
301 3ld9_A DTMP kinase, thymidylat 94.8 0.044 1.5E-06 46.3 5.8 28 168-195 20-47 (223)
302 1ypw_A Transitional endoplasmi 94.8 0.016 5.4E-07 58.7 3.5 53 144-196 476-538 (806)
303 3vr4_D V-type sodium ATPase su 94.7 0.017 5.9E-07 53.8 3.4 89 169-260 151-258 (465)
304 2v9p_A Replication protein E1; 94.7 0.017 5.7E-07 51.3 3.2 26 168-193 125-150 (305)
305 2ff7_A Alpha-hemolysin translo 94.7 0.013 4.6E-07 50.3 2.5 24 169-192 35-58 (247)
306 2olj_A Amino acid ABC transpor 94.7 0.014 4.8E-07 50.7 2.6 25 168-192 49-73 (263)
307 2pze_A Cystic fibrosis transme 94.7 0.014 4.7E-07 49.6 2.5 25 169-193 34-58 (229)
308 2wji_A Ferrous iron transport 94.7 0.019 6.5E-07 45.6 3.2 22 170-191 4-25 (165)
309 2qi9_C Vitamin B12 import ATP- 94.7 0.016 5.3E-07 50.0 2.9 25 169-193 26-50 (249)
310 1sgw_A Putative ABC transporte 94.7 0.011 3.9E-07 49.6 1.9 24 169-192 35-58 (214)
311 2i1q_A DNA repair and recombin 94.7 0.051 1.7E-06 48.5 6.3 39 154-193 84-122 (322)
312 2f9l_A RAB11B, member RAS onco 94.7 0.018 6.3E-07 47.3 3.2 24 169-192 5-28 (199)
313 2axn_A 6-phosphofructo-2-kinas 94.6 0.031 1.1E-06 53.5 5.1 30 168-197 34-63 (520)
314 1xp8_A RECA protein, recombina 94.6 0.026 8.8E-07 51.5 4.3 53 151-204 56-109 (366)
315 3v9p_A DTMP kinase, thymidylat 94.6 0.041 1.4E-06 46.6 5.3 28 169-196 25-52 (227)
316 3fdi_A Uncharacterized protein 94.6 0.02 6.8E-07 47.6 3.3 25 170-194 7-31 (201)
317 1vpl_A ABC transporter, ATP-bi 94.6 0.015 5E-07 50.4 2.5 25 168-192 40-64 (256)
318 2afh_E Nitrogenase iron protei 94.6 0.033 1.1E-06 48.9 4.8 27 170-196 3-29 (289)
319 2ghi_A Transport protein; mult 94.6 0.015 5.2E-07 50.4 2.6 25 169-193 46-70 (260)
320 2ixe_A Antigen peptide transpo 94.6 0.015 5.1E-07 50.8 2.5 25 168-192 44-68 (271)
321 2zej_A Dardarin, leucine-rich 94.6 0.015 5E-07 47.3 2.3 21 171-191 4-24 (184)
322 3hjn_A DTMP kinase, thymidylat 94.5 0.07 2.4E-06 44.0 6.4 34 171-204 2-35 (197)
323 3lv8_A DTMP kinase, thymidylat 94.5 0.056 1.9E-06 46.0 6.0 36 169-204 27-63 (236)
324 4hlc_A DTMP kinase, thymidylat 94.5 0.037 1.3E-06 46.1 4.8 29 170-198 3-31 (205)
325 2h92_A Cytidylate kinase; ross 94.5 0.017 6E-07 48.3 2.7 24 170-193 4-27 (219)
326 2qm8_A GTPase/ATPase; G protei 94.5 0.059 2E-06 48.6 6.4 28 167-194 53-80 (337)
327 2p67_A LAO/AO transport system 94.5 0.055 1.9E-06 48.8 6.2 28 167-194 54-81 (341)
328 3zq6_A Putative arsenical pump 94.5 0.064 2.2E-06 48.0 6.6 28 169-196 14-41 (324)
329 2yz2_A Putative ABC transporte 94.5 0.016 5.5E-07 50.4 2.5 25 168-192 32-56 (266)
330 3gmt_A Adenylate kinase; ssgci 94.5 0.023 7.9E-07 48.1 3.4 25 169-193 8-32 (230)
331 2ihy_A ABC transporter, ATP-bi 94.5 0.016 5.5E-07 50.8 2.5 24 169-192 47-70 (279)
332 4tmk_A Protein (thymidylate ki 94.5 0.064 2.2E-06 44.9 6.1 34 170-203 4-38 (213)
333 2nq2_C Hypothetical ABC transp 94.5 0.017 5.7E-07 49.9 2.6 25 169-193 31-55 (253)
334 3cmu_A Protein RECA, recombina 94.5 0.036 1.2E-06 60.8 5.6 50 155-204 1413-1462(2050)
335 1tq4_A IIGP1, interferon-induc 94.4 0.018 6.3E-07 53.3 2.9 34 157-191 58-91 (413)
336 3io3_A DEHA2D07832P; chaperone 94.4 0.056 1.9E-06 48.9 6.0 27 168-194 17-43 (348)
337 3sop_A Neuronal-specific septi 94.4 0.02 6.9E-07 49.9 3.0 23 170-192 3-25 (270)
338 2nzj_A GTP-binding protein REM 94.4 0.028 9.7E-07 44.7 3.6 24 169-192 4-27 (175)
339 2wjg_A FEOB, ferrous iron tran 94.4 0.026 8.8E-07 45.7 3.4 24 169-192 7-30 (188)
340 2vp4_A Deoxynucleoside kinase; 94.4 0.017 5.7E-07 49.0 2.3 25 168-192 19-43 (230)
341 3iqw_A Tail-anchored protein t 94.3 0.064 2.2E-06 48.2 6.2 29 168-196 15-43 (334)
342 3thx_A DNA mismatch repair pro 94.3 0.063 2.2E-06 55.0 6.7 23 168-190 661-683 (934)
343 2ce2_X GTPase HRAS; signaling 94.3 0.022 7.6E-07 44.6 2.8 22 171-192 5-26 (166)
344 3tqf_A HPR(Ser) kinase; transf 94.3 0.028 9.7E-07 45.2 3.3 23 170-192 17-39 (181)
345 3kjh_A CO dehydrogenase/acetyl 94.2 0.042 1.4E-06 46.7 4.6 32 172-203 3-34 (254)
346 3lda_A DNA repair protein RAD5 94.2 0.02 6.8E-07 52.9 2.7 38 154-192 164-201 (400)
347 3fvq_A Fe(3+) IONS import ATP- 94.2 0.022 7.5E-07 51.7 2.9 23 169-191 30-52 (359)
348 3cnl_A YLQF, putative uncharac 94.2 0.099 3.4E-06 45.2 7.0 29 12-40 11-39 (262)
349 1nij_A Hypothetical protein YJ 94.2 0.025 8.7E-07 50.5 3.2 26 168-193 3-28 (318)
350 1u8z_A RAS-related protein RAL 94.2 0.038 1.3E-06 43.4 3.9 23 170-192 5-27 (168)
351 1z2a_A RAS-related protein RAB 94.2 0.034 1.2E-06 43.8 3.6 24 169-192 5-28 (168)
352 3kta_A Chromosome segregation 94.2 0.025 8.6E-07 45.8 2.9 24 170-193 27-50 (182)
353 2ffh_A Protein (FFH); SRP54, s 94.2 0.052 1.8E-06 50.5 5.3 29 168-196 97-125 (425)
354 2www_A Methylmalonic aciduria 94.1 0.051 1.7E-06 49.2 5.1 27 168-194 73-99 (349)
355 2iut_A DNA translocase FTSK; n 94.1 0.82 2.8E-05 43.9 13.6 39 169-207 214-255 (574)
356 2pjz_A Hypothetical protein ST 94.1 0.021 7.3E-07 49.5 2.5 25 169-193 30-54 (263)
357 1nrj_B SR-beta, signal recogni 94.1 0.03 1E-06 46.6 3.4 25 168-192 11-35 (218)
358 1p5z_B DCK, deoxycytidine kina 94.1 0.015 5.1E-07 50.4 1.5 27 168-194 23-49 (263)
359 3nh6_A ATP-binding cassette SU 94.1 0.019 6.4E-07 51.1 2.1 24 168-191 79-102 (306)
360 2j37_W Signal recognition part 94.1 0.047 1.6E-06 51.9 5.0 29 168-196 100-128 (504)
361 2lkc_A Translation initiation 94.1 0.031 1.1E-06 44.6 3.3 24 168-191 7-30 (178)
362 3con_A GTPase NRAS; structural 94.1 0.027 9.2E-07 45.7 2.9 23 170-192 22-44 (190)
363 1kao_A RAP2A; GTP-binding prot 94.0 0.029 9.8E-07 44.1 2.9 23 170-192 4-26 (167)
364 1z47_A CYSA, putative ABC-tran 94.0 0.027 9.2E-07 51.1 3.0 23 169-191 41-63 (355)
365 1c1y_A RAS-related protein RAP 94.0 0.029 1E-06 44.2 2.9 23 170-192 4-26 (167)
366 1bif_A 6-phosphofructo-2-kinas 94.0 0.049 1.7E-06 51.4 5.0 29 169-197 39-67 (469)
367 3rlf_A Maltose/maltodextrin im 94.0 0.027 9.4E-07 51.5 3.0 23 169-191 29-51 (381)
368 1z08_A RAS-related protein RAB 94.0 0.03 1E-06 44.3 2.9 24 169-192 6-29 (170)
369 3hdt_A Putative kinase; struct 93.9 0.036 1.2E-06 46.8 3.5 26 169-194 14-39 (223)
370 1ek0_A Protein (GTP-binding pr 93.9 0.031 1.1E-06 44.1 2.9 22 171-192 5-26 (170)
371 1m7b_A RND3/RHOE small GTP-bin 93.9 0.029 9.9E-07 45.4 2.8 24 169-192 7-30 (184)
372 3tui_C Methionine import ATP-b 93.9 0.029 1E-06 51.0 3.0 24 168-191 53-76 (366)
373 2gj8_A MNME, tRNA modification 93.9 0.027 9.3E-07 45.2 2.6 23 170-192 5-27 (172)
374 2yyz_A Sugar ABC transporter, 93.9 0.029 1E-06 51.0 3.0 24 168-191 28-51 (359)
375 1r8s_A ADP-ribosylation factor 93.9 0.033 1.1E-06 43.8 3.1 21 172-192 3-23 (164)
376 3f9v_A Minichromosome maintena 93.9 0.012 4.2E-07 57.4 0.6 50 144-193 294-351 (595)
377 2erx_A GTP-binding protein DI- 93.9 0.029 9.9E-07 44.4 2.7 22 170-191 4-25 (172)
378 1svi_A GTP-binding protein YSX 93.9 0.034 1.2E-06 45.2 3.2 25 168-192 22-46 (195)
379 1z0j_A RAB-22, RAS-related pro 93.9 0.032 1.1E-06 44.1 2.9 23 170-192 7-29 (170)
380 2it1_A 362AA long hypothetical 93.9 0.03 1E-06 51.0 3.0 25 168-192 28-52 (362)
381 1lw7_A Transcriptional regulat 93.9 0.034 1.2E-06 50.7 3.4 26 169-194 170-195 (365)
382 3q85_A GTP-binding protein REM 93.9 0.04 1.4E-06 43.5 3.5 22 170-191 3-24 (169)
383 2bbs_A Cystic fibrosis transme 93.9 0.025 8.7E-07 49.8 2.5 26 168-193 63-88 (290)
384 3cr8_A Sulfate adenylyltranfer 93.9 0.029 1E-06 54.0 3.1 28 168-195 368-395 (552)
385 2iwr_A Centaurin gamma 1; ANK 93.8 0.03 1E-06 44.8 2.8 23 170-192 8-30 (178)
386 3d31_A Sulfate/molybdate ABC t 93.8 0.026 9.1E-07 51.0 2.6 25 168-192 25-49 (348)
387 3ihw_A Centg3; RAS, centaurin, 93.8 0.032 1.1E-06 45.3 2.9 24 169-192 20-43 (184)
388 1ky3_A GTP-binding protein YPT 93.8 0.042 1.4E-06 43.9 3.6 25 168-192 7-31 (182)
389 2fn4_A P23, RAS-related protei 93.8 0.044 1.5E-06 43.8 3.7 25 168-192 8-32 (181)
390 1g29_1 MALK, maltose transport 93.8 0.031 1.1E-06 51.1 3.0 24 169-192 29-52 (372)
391 4dzz_A Plasmid partitioning pr 93.8 0.061 2.1E-06 44.2 4.7 35 170-204 2-37 (206)
392 1x6v_B Bifunctional 3'-phospho 93.8 0.043 1.5E-06 53.6 4.1 27 168-194 51-77 (630)
393 2c61_A A-type ATP synthase non 93.8 0.078 2.7E-06 49.6 5.7 88 169-259 152-258 (469)
394 1v43_A Sugar-binding transport 93.8 0.032 1.1E-06 51.0 3.0 24 168-191 36-59 (372)
395 1wms_A RAB-9, RAB9, RAS-relate 93.8 0.034 1.2E-06 44.4 2.9 24 169-192 7-30 (177)
396 1m8p_A Sulfate adenylyltransfe 93.8 0.043 1.5E-06 53.2 4.1 26 169-194 396-421 (573)
397 1oxx_K GLCV, glucose, ABC tran 93.8 0.025 8.5E-07 51.4 2.2 24 168-191 30-53 (353)
398 1r2q_A RAS-related protein RAB 93.7 0.035 1.2E-06 43.8 2.9 23 170-192 7-29 (170)
399 3q72_A GTP-binding protein RAD 93.7 0.03 1E-06 44.2 2.5 21 171-191 4-24 (166)
400 3cmw_A Protein RECA, recombina 93.7 0.099 3.4E-06 56.6 7.1 52 152-204 715-767 (1706)
401 4gzl_A RAS-related C3 botulinu 93.7 0.039 1.3E-06 45.6 3.3 24 169-192 30-53 (204)
402 3c5c_A RAS-like protein 12; GD 93.7 0.035 1.2E-06 45.1 2.9 24 169-192 21-44 (187)
403 3thx_B DNA mismatch repair pro 93.7 0.092 3.2E-06 53.6 6.5 24 168-191 672-695 (918)
404 1g16_A RAS-related protein SEC 93.7 0.046 1.6E-06 43.1 3.5 23 170-192 4-26 (170)
405 3t1o_A Gliding protein MGLA; G 93.6 0.034 1.2E-06 45.2 2.7 26 169-194 14-39 (198)
406 1p9r_A General secretion pathw 93.6 0.071 2.4E-06 49.5 5.2 29 168-196 166-194 (418)
407 3upu_A ATP-dependent DNA helic 93.6 0.068 2.3E-06 50.3 5.1 28 170-197 46-73 (459)
408 1m2o_B GTP-binding protein SAR 93.6 0.036 1.2E-06 45.2 2.8 23 170-192 24-46 (190)
409 3tw8_B RAS-related protein RAB 93.6 0.043 1.5E-06 43.8 3.2 25 167-191 7-31 (181)
410 3pqc_A Probable GTP-binding pr 93.6 0.041 1.4E-06 44.6 3.1 25 168-192 22-46 (195)
411 2gza_A Type IV secretion syste 93.6 0.048 1.7E-06 49.6 3.8 92 169-268 175-270 (361)
412 3ug7_A Arsenical pump-driving 93.5 0.11 3.9E-06 46.9 6.3 30 167-196 24-53 (349)
413 3kkq_A RAS-related protein M-R 93.5 0.04 1.4E-06 44.3 2.9 24 169-192 18-41 (183)
414 2oil_A CATX-8, RAS-related pro 93.5 0.04 1.4E-06 44.8 2.9 24 169-192 25-48 (193)
415 1z0f_A RAB14, member RAS oncog 93.5 0.053 1.8E-06 43.2 3.6 25 168-192 14-38 (179)
416 3bc1_A RAS-related protein RAB 93.5 0.053 1.8E-06 43.8 3.7 25 168-192 10-34 (195)
417 4dsu_A GTPase KRAS, isoform 2B 93.5 0.041 1.4E-06 44.4 2.9 23 170-192 5-27 (189)
418 1upt_A ARL1, ADP-ribosylation 93.5 0.055 1.9E-06 42.8 3.7 24 169-192 7-30 (171)
419 2hxs_A RAB-26, RAS-related pro 93.5 0.063 2.2E-06 42.7 4.1 24 169-192 6-29 (178)
420 1fzq_A ADP-ribosylation factor 93.5 0.048 1.7E-06 44.0 3.4 25 168-192 15-39 (181)
421 3gd7_A Fusion complex of cysti 93.5 0.037 1.3E-06 50.9 2.9 24 168-191 46-69 (390)
422 1mh1_A RAC1; GTP-binding, GTPa 93.5 0.041 1.4E-06 44.2 2.9 23 170-192 6-28 (186)
423 2cxx_A Probable GTP-binding pr 93.5 0.034 1.1E-06 45.0 2.4 22 171-192 3-24 (190)
424 2qe7_A ATP synthase subunit al 93.4 0.056 1.9E-06 50.9 4.1 88 168-260 161-264 (502)
425 2cjw_A GTP-binding protein GEM 93.4 0.042 1.4E-06 44.9 2.9 23 169-191 6-28 (192)
426 2bme_A RAB4A, RAS-related prot 93.4 0.041 1.4E-06 44.3 2.8 24 169-192 10-33 (186)
427 2y8e_A RAB-protein 6, GH09086P 93.4 0.041 1.4E-06 43.8 2.8 22 170-191 15-36 (179)
428 3bwd_D RAC-like GTP-binding pr 93.4 0.043 1.5E-06 43.9 2.9 23 170-192 9-31 (182)
429 2a9k_A RAS-related protein RAL 93.4 0.043 1.5E-06 44.0 2.9 24 169-192 18-41 (187)
430 2efe_B Small GTP-binding prote 93.3 0.044 1.5E-06 43.8 2.9 24 169-192 12-35 (181)
431 2atv_A RERG, RAS-like estrogen 93.3 0.044 1.5E-06 44.8 2.9 24 169-192 28-51 (196)
432 3mfy_A V-type ATP synthase alp 93.3 0.28 9.5E-06 46.8 8.6 49 168-222 226-274 (588)
433 3clv_A RAB5 protein, putative; 93.3 0.045 1.5E-06 44.6 2.9 24 169-192 7-30 (208)
434 3t5g_A GTP-binding protein RHE 93.3 0.044 1.5E-06 44.0 2.8 23 169-191 6-28 (181)
435 2g6b_A RAS-related protein RAB 93.3 0.046 1.6E-06 43.7 2.9 24 169-192 10-33 (180)
436 3ch4_B Pmkase, phosphomevalona 93.3 0.067 2.3E-06 44.3 3.9 26 168-193 10-35 (202)
437 1pui_A ENGB, probable GTP-bind 93.2 0.028 9.5E-07 46.5 1.6 24 168-191 25-48 (210)
438 3dz8_A RAS-related protein RAB 93.2 0.046 1.6E-06 44.4 2.9 24 169-192 23-46 (191)
439 3tmk_A Thymidylate kinase; pho 93.2 0.059 2E-06 45.2 3.6 27 169-195 5-31 (216)
440 2obl_A ESCN; ATPase, hydrolase 93.2 0.059 2E-06 48.8 3.8 28 168-195 70-97 (347)
441 2bov_A RAla, RAS-related prote 93.2 0.069 2.3E-06 43.7 3.9 25 168-192 13-37 (206)
442 2ew1_A RAS-related protein RAB 93.2 0.045 1.6E-06 45.2 2.8 25 168-192 25-49 (201)
443 1gwn_A RHO-related GTP-binding 93.2 0.045 1.6E-06 45.3 2.8 25 168-192 27-51 (205)
444 3ea0_A ATPase, para family; al 93.2 0.11 3.9E-06 43.9 5.4 29 168-196 3-32 (245)
445 3lxx_A GTPase IMAP family memb 93.1 0.058 2E-06 45.8 3.5 25 168-192 28-52 (239)
446 1zd9_A ADP-ribosylation factor 93.1 0.049 1.7E-06 44.2 2.9 24 169-192 22-45 (188)
447 3gqb_B V-type ATP synthase bet 93.1 0.045 1.5E-06 51.0 2.9 26 169-194 147-172 (464)
448 2fg5_A RAB-22B, RAS-related pr 93.1 0.047 1.6E-06 44.4 2.8 24 169-192 23-46 (192)
449 2o8b_B DNA mismatch repair pro 93.1 0.084 2.9E-06 54.7 5.2 22 169-190 789-810 (1022)
450 4b3f_X DNA-binding protein smu 93.1 0.096 3.3E-06 51.6 5.5 34 154-192 195-228 (646)
451 3cbq_A GTP-binding protein REM 93.1 0.048 1.6E-06 44.7 2.8 23 168-190 22-44 (195)
452 2gf9_A RAS-related protein RAB 93.1 0.05 1.7E-06 44.1 2.9 24 169-192 22-45 (189)
453 3oes_A GTPase rhebl1; small GT 93.1 0.048 1.6E-06 44.8 2.8 25 168-192 23-47 (201)
454 2ck3_A ATP synthase subunit al 93.1 0.065 2.2E-06 50.6 3.9 90 168-260 161-272 (510)
455 3reg_A RHO-like small GTPase; 93.1 0.051 1.7E-06 44.2 2.9 24 169-192 23-46 (194)
456 1vg8_A RAS-related protein RAB 93.1 0.065 2.2E-06 44.0 3.6 25 168-192 7-31 (207)
457 2gks_A Bifunctional SAT/APS ki 93.1 0.1 3.4E-06 50.3 5.4 26 169-194 372-397 (546)
458 2a5j_A RAS-related protein RAB 93.1 0.051 1.8E-06 44.1 2.9 24 169-192 21-44 (191)
459 3tkl_A RAS-related protein RAB 93.0 0.052 1.8E-06 44.1 2.9 25 168-192 15-39 (196)
460 2qnr_A Septin-2, protein NEDD5 93.0 0.041 1.4E-06 48.8 2.4 22 170-191 19-40 (301)
461 1f6b_A SAR1; gtpases, N-termin 93.0 0.055 1.9E-06 44.4 3.1 23 169-191 25-47 (198)
462 1zbd_A Rabphilin-3A; G protein 93.0 0.048 1.6E-06 44.7 2.7 24 169-192 8-31 (203)
463 2fh5_B SR-beta, signal recogni 93.0 0.055 1.9E-06 44.8 3.1 24 169-192 7-30 (214)
464 2oze_A ORF delta'; para, walke 93.0 0.088 3E-06 46.2 4.6 39 154-196 23-64 (298)
465 1z06_A RAS-related protein RAB 93.0 0.053 1.8E-06 43.9 2.9 24 169-192 20-43 (189)
466 2p5s_A RAS and EF-hand domain 92.9 0.054 1.9E-06 44.3 2.9 25 168-192 27-51 (199)
467 1h65_A Chloroplast outer envel 92.9 0.092 3.1E-06 45.5 4.5 25 168-192 38-62 (270)
468 2rcn_A Probable GTPase ENGC; Y 92.9 0.054 1.8E-06 49.1 3.0 24 170-193 216-239 (358)
469 2fz4_A DNA repair protein RAD2 92.9 0.31 1E-05 41.3 7.7 22 172-193 111-132 (237)
470 1x3s_A RAS-related protein RAB 92.9 0.056 1.9E-06 43.8 2.9 23 170-192 16-38 (195)
471 3fkq_A NTRC-like two-domain pr 92.9 0.096 3.3E-06 47.8 4.8 38 167-204 141-179 (373)
472 2woj_A ATPase GET3; tail-ancho 92.9 0.19 6.5E-06 45.5 6.7 27 168-194 17-43 (354)
473 2yv5_A YJEQ protein; hydrolase 92.9 0.053 1.8E-06 48.0 3.0 23 170-193 166-188 (302)
474 2qu8_A Putative nucleolar GTP- 92.9 0.057 1.9E-06 45.4 3.0 25 168-192 28-52 (228)
475 4bas_A ADP-ribosylation factor 92.9 0.065 2.2E-06 43.6 3.3 25 167-191 15-39 (199)
476 3oaa_A ATP synthase subunit al 92.8 0.23 8E-06 46.7 7.3 52 168-224 161-213 (513)
477 2r9v_A ATP synthase subunit al 92.8 0.24 8.3E-06 46.7 7.4 88 168-260 174-277 (515)
478 1ega_A Protein (GTP-binding pr 92.8 0.064 2.2E-06 47.5 3.4 24 169-192 8-31 (301)
479 3def_A T7I23.11 protein; chlor 92.8 0.099 3.4E-06 45.1 4.6 25 168-192 35-59 (262)
480 2g3y_A GTP-binding protein GEM 92.8 0.055 1.9E-06 45.2 2.8 23 169-191 37-59 (211)
481 2q3h_A RAS homolog gene family 92.7 0.052 1.8E-06 44.4 2.5 24 169-192 20-43 (201)
482 4dkx_A RAS-related protein RAB 92.7 0.06 2.1E-06 45.2 2.9 21 171-191 15-35 (216)
483 3k53_A Ferrous iron transport 92.7 0.067 2.3E-06 46.5 3.3 24 169-192 3-26 (271)
484 4i1u_A Dephospho-COA kinase; s 92.7 0.062 2.1E-06 44.8 2.9 24 168-191 8-31 (210)
485 2gf0_A GTP-binding protein DI- 92.7 0.082 2.8E-06 43.0 3.7 23 169-191 8-30 (199)
486 1f2t_A RAD50 ABC-ATPase; DNA d 92.7 0.074 2.5E-06 41.7 3.2 24 170-193 24-47 (149)
487 1c9k_A COBU, adenosylcobinamid 92.7 0.052 1.8E-06 44.1 2.3 29 172-204 2-30 (180)
488 2h17_A ADP-ribosylation factor 92.7 0.051 1.8E-06 43.7 2.3 24 169-192 21-44 (181)
489 2ius_A DNA translocase FTSK; n 92.6 0.44 1.5E-05 45.3 9.1 25 169-193 167-191 (512)
490 3llu_A RAS-related GTP-binding 92.6 0.052 1.8E-06 44.4 2.4 24 169-192 20-43 (196)
491 2bcg_Y Protein YP2, GTP-bindin 92.6 0.061 2.1E-06 44.3 2.8 24 169-192 8-31 (206)
492 2atx_A Small GTP binding prote 92.6 0.062 2.1E-06 43.7 2.8 24 169-192 18-41 (194)
493 1ksh_A ARF-like protein 2; sma 92.6 0.05 1.7E-06 43.9 2.2 25 168-192 17-41 (186)
494 3iev_A GTP-binding protein ERA 92.6 0.073 2.5E-06 47.3 3.4 26 167-192 8-33 (308)
495 2o52_A RAS-related protein RAB 92.6 0.059 2E-06 44.2 2.7 24 168-191 24-47 (200)
496 2fv8_A H6, RHO-related GTP-bin 92.6 0.062 2.1E-06 44.4 2.8 23 170-192 26-48 (207)
497 1ko7_A HPR kinase/phosphatase; 92.5 0.099 3.4E-06 46.4 4.2 23 170-192 145-167 (314)
498 3cph_A RAS-related protein SEC 92.5 0.066 2.3E-06 44.2 2.9 24 169-192 20-43 (213)
499 1zj6_A ADP-ribosylation factor 92.5 0.082 2.8E-06 42.7 3.5 24 168-191 15-38 (187)
500 1jwy_B Dynamin A GTPase domain 92.5 0.064 2.2E-06 47.5 3.0 25 168-192 23-47 (315)
No 1
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=1e-40 Score=272.81 Aligned_cols=135 Identities=36% Similarity=0.683 Sum_probs=111.4
Q ss_pred CCcccccCCccccHHHHHHHhhCceEEEEecCCCCCchhhHHHHHHHHHhhhhCCCeEEEEeeecCCcccccccCchHHH
Q 037291 1 MDDEKLRRGDEISDALLNAIQGSKISVVIFSKDYGSSKWCLNELVKILECKHTNRQIIIPVFYGVSPSDVRHQTGIFKHG 80 (349)
Q Consensus 1 ~d~~~~~~g~~~~~~i~~ai~~s~~~ivv~S~~y~~S~~cl~El~~i~~~~~~~~~~vlPvfy~v~p~~vr~~~g~~~~~ 80 (349)
+||+++++|+.|.++|.+||++|+++|||||+||++|+||++||++|++|.+.++++|+||||+|+|++||+|+|+|+++
T Consensus 41 ~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~EL~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~a 120 (176)
T 3jrn_A 41 KDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQ 120 (176)
T ss_dssp CCCC--------------CCTTEEEEEEEECTTTTTCHHHHHHHHHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHH
T ss_pred EEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHHHHHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHH
Confidence 58889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHhhcccChHHHHHHHHHHHHhhcccCCCCcccchhHHHHHHHHHhhhhccccccc
Q 037291 81 FDQLKQHFEEKPEMVQRWRDALRETSGLAGHESTKFRHDAELVNKIVEDVLKNLEKITV 139 (349)
Q Consensus 81 ~~~~~~~~~~~~~~v~~wr~al~~~~~~~g~~~~~~~~e~~~i~~iv~~v~~~l~~~~~ 139 (349)
|.+|+.+ .+.+++++||+||+++++++||++. .+|+++|++||++|+++++.+++
T Consensus 121 f~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~~--~~e~~~i~~Iv~~v~~~l~~~~~ 175 (176)
T 3jrn_A 121 FKKHASR--EDPEKVLKWRQALTNFAQLSGDCSG--DDDSKLVDKIANEISNKKTIYAT 175 (176)
T ss_dssp HHHHHTT--SCHHHHHHHHHHHHHHTTSCCEECC--SCHHHHHHHHHHHHHTTCC----
T ss_pred HHHHHhc--cCHHHHHHHHHHHHHHhcccceecC--CCHHHHHHHHHHHHHHHhcCCCC
Confidence 9999988 5668899999999999999999984 45999999999999999987664
No 2
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=1.1e-39 Score=270.58 Aligned_cols=134 Identities=41% Similarity=0.739 Sum_probs=126.2
Q ss_pred CCcccccCCccccHHHHHHHhhCceEEEEecCCCCCchhhHHHHHHHHHhhhh-CCCeEEEEeeecCCcccccccCchHH
Q 037291 1 MDDEKLRRGDEISDALLNAIQGSKISVVIFSKDYGSSKWCLNELVKILECKHT-NRQIIIPVFYGVSPSDVRHQTGIFKH 79 (349)
Q Consensus 1 ~d~~~~~~g~~~~~~i~~ai~~s~~~ivv~S~~y~~S~~cl~El~~i~~~~~~-~~~~vlPvfy~v~p~~vr~~~g~~~~ 79 (349)
+|++++++|+.|.++|.+||++|+++|||||++|++|.||++||++|++|.++ ++++||||||+|+|++||+|+|.|++
T Consensus 68 ~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~ 147 (204)
T 3ozi_A 68 RDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKK 147 (204)
T ss_dssp EEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHHHHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHH
T ss_pred EeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHHHHHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHH
Confidence 47789999999999999999999999999999999999999999999999975 57899999999999999999999999
Q ss_pred HHHHhHhhcccChHHHHHHHHHHHHhhcccCCCCcccchhHHHHHHHHHhhhhcccc
Q 037291 80 GFDQLKQHFEEKPEMVQRWRDALRETSGLAGHESTKFRHDAELVNKIVEDVLKNLEK 136 (349)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~wr~al~~~~~~~g~~~~~~~~e~~~i~~iv~~v~~~l~~ 136 (349)
+|.+|+.++. .+++++||.||+++++++||++.+...+.+++++|+.++++++++
T Consensus 148 af~~~~~~~~--~~~v~~Wr~AL~~va~lsG~~~~~~~~e~~~i~~Iv~di~~kl~~ 202 (204)
T 3ozi_A 148 AFRKHANKFD--GQTIQNWKDALKKVGDLKGWHIGKNDKQGAIADKVSADIWSHISK 202 (204)
T ss_dssp HHHHHTTTSC--HHHHHHHHHHHHHHHTSCBEEECTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhC--HHHHHHHHHHHHHHhccCceecCCCCCHHHHHHHHHHHHHHHhcc
Confidence 9999998874 467999999999999999999999888999999999999998864
No 3
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.97 E-value=2.5e-31 Score=259.85 Aligned_cols=190 Identities=17% Similarity=0.190 Sum_probs=153.5
Q ss_pred ccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHH----hhhcCCcceEEEEeccccccCC-CChHHHHHH
Q 037291 148 VGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFD----QFTGEFDGSCFMSDVRRNSETG-GGLEHLQKE 222 (349)
Q Consensus 148 vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~----~~~~~f~~~~~~~~~~~~~~~~-~~~~~l~~~ 222 (349)
|||+.++++|.++|.......+++|+|+||||+||||||+++|+ +++.+|+.++|+. .+... .++..++..
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~----vs~~~~~~~~~~~~~ 206 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK----DSGTAPKSTFDLFTD 206 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE----CCCCSTTHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEE----ECCCCCCCHHHHHHH
Confidence 59999999999999765344689999999999999999999996 6888999999996 33311 468899999
Q ss_pred HHHHhhcccc--cccC--C----CchHHHHHHhCCC-eEEEEEeCCCChhHHHHHhcccCCCCCCcEEEEEeCChhHHHh
Q 037291 223 MLSTILSEKL--EVAG--A----NIPHFTKERVWRM-KVLIVLDDVNEVGQLEGLIGELDQFGPGSRIVVTTRDKGVLEK 293 (349)
Q Consensus 223 ll~~~~~~~~--~~~~--~----~~~~~~~~~l~~k-~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IIiTtR~~~~~~~ 293 (349)
++.++..... ...+ + .+...+++.+.++ |+||||||||+.+++ .+.. .+||+||||||+..++..
T Consensus 207 il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~ 280 (549)
T 2a5y_B 207 ILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNA 280 (549)
T ss_dssp HHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGG
T ss_pred HHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHH
Confidence 9999876532 1111 2 2468888999996 999999999998876 3322 279999999999999877
Q ss_pred cCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCccccC
Q 037291 294 FRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNPLVLK 349 (349)
Q Consensus 294 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLalk 349 (349)
++. ...+|+|++|+.++|++||++++|.... ++.+.+++++|+++|+|+||||+
T Consensus 281 ~~~-~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~ 334 (549)
T 2a5y_B 281 ASQ-TCEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLM 334 (549)
T ss_dssp CCS-CEEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCC-CCeEEECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHH
Confidence 641 3367999999999999999999987543 46788899999999999999985
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.94 E-value=8.4e-27 Score=247.81 Aligned_cols=194 Identities=23% Similarity=0.314 Sum_probs=144.8
Q ss_pred CCCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHh---hhcCCcceEEEEeccccccCCCChHH
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQ---FTGEFDGSCFMSDVRRNSETGGGLEH 218 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~---~~~~f~~~~~~~~~~~~~~~~~~~~~ 218 (349)
..+..||||+.++++|.++|... ++.+++|+|+||||+||||||+++|++ ....|...+||..+.... ...+..
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~-~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~ 197 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKL-NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQD--KSGLLM 197 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTT-TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCC--HHHHHH
T ss_pred CCCceeccHHHHHHHHHHHHhhc-cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcC--chHHHH
Confidence 55677999999999999999766 567899999999999999999999986 355677666554443321 223344
Q ss_pred HHHHHHHHhhcccccccC-----CCchHHHHHHhCCC--eEEEEEeCCCChhHHHHHhcccCCCCCCcEEEEEeCChhHH
Q 037291 219 LQKEMLSTILSEKLEVAG-----ANIPHFTKERVWRM--KVLIVLDDVNEVGQLEGLIGELDQFGPGSRIVVTTRDKGVL 291 (349)
Q Consensus 219 l~~~ll~~~~~~~~~~~~-----~~~~~~~~~~l~~k--~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IIiTtR~~~~~ 291 (349)
.+..++..+......... +.+...++..+.++ |+||||||||+..++..+ ++||+||||||++.++
T Consensus 198 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~ 270 (1249)
T 3sfz_A 198 KLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVT 270 (1249)
T ss_dssp HHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTT
T ss_pred HHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHH
Confidence 455566666543322111 33445666677666 999999999998776654 6789999999999887
Q ss_pred HhcCCCCCcEEEcCC-CCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCccccC
Q 037291 292 EKFRGEEKKIHRVNG-LEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNPLVLK 349 (349)
Q Consensus 292 ~~~~~~~~~~~~l~~-L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLalk 349 (349)
..+.. ....+++++ |+.+||++||+..++... +.+.+.+++|+++|+|+||||+
T Consensus 271 ~~~~~-~~~~~~~~~~l~~~~a~~l~~~~~~~~~---~~~~~~~~~i~~~~~glPLal~ 325 (1249)
T 3sfz_A 271 DSVMG-PKHVVPVESGLGREKGLEILSLFVNMKK---EDLPAEAHSIIKECKGSPLVVS 325 (1249)
T ss_dssp TTCCS-CBCCEECCSSCCHHHHHHHHHHHHTSCS---TTCCTHHHHHHHHTTTCHHHHH
T ss_pred HhhcC-CceEEEecCCCCHHHHHHHHHHhhCCCh---hhCcHHHHHHHHHhCCCHHHHH
Confidence 54321 567899996 999999999999885432 3334568999999999999985
No 5
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.92 E-value=7.7e-26 Score=227.39 Aligned_cols=180 Identities=17% Similarity=0.114 Sum_probs=129.6
Q ss_pred CCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHH--hhhcCCcc-eEEEEeccccccCCCChHHHHH
Q 037291 145 NGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFD--QFTGEFDG-SCFMSDVRRNSETGGGLEHLQK 221 (349)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~--~~~~~f~~-~~~~~~~~~~~~~~~~~~~l~~ 221 (349)
+..|||+.++++|.++|... +..++|+|+||||+||||||+++|+ +++.+|+. ++|+. + +. ..+...++.
T Consensus 128 k~~VGRe~eLeeL~elL~~~--d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVs-V---s~-~~d~~~IL~ 200 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLEL--RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN-L---KN-CNSPETVLE 200 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHC--CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEE-C---CC-SSSHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhcc--CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEE-e---CC-CCCHHHHHH
Confidence 34599999999999999863 3479999999999999999999997 46788997 55555 4 33 445666666
Q ss_pred HHHHHhhcccccc---c--------C-CCchHHHHHHh---CCCeEEEEEeCCCChhHHHHHhcccCCCCCCcEEEEEeC
Q 037291 222 EMLSTILSEKLEV---A--------G-ANIPHFTKERV---WRMKVLIVLDDVNEVGQLEGLIGELDQFGPGSRIVVTTR 286 (349)
Q Consensus 222 ~ll~~~~~~~~~~---~--------~-~~~~~~~~~~l---~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IIiTtR 286 (349)
.++..+....... . . +.+...+++.+ .++|+||||||||+.++|+.+ .+||+||||||
T Consensus 201 ~Ll~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f-------~pGSRILVTTR 273 (1221)
T 1vt4_I 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-------NLSCKILLTTR 273 (1221)
T ss_dssp HHHHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH-------HSSCCEEEECS
T ss_pred HHHHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhh-------CCCeEEEEecc
Confidence 6666433221100 0 0 12234555554 689999999999998888775 26899999999
Q ss_pred ChhHHHhcCCCCCcEEEcC------CCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCccccC
Q 037291 287 DKGVLEKFRGEEKKIHRVN------GLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNPLVLK 349 (349)
Q Consensus 287 ~~~~~~~~~~~~~~~~~l~------~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLalk 349 (349)
++.++..+. ....|+|+ +|+.+||++||+++. ... . .++..+ .|+|+||||+
T Consensus 274 d~~Va~~l~--g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~--~---eeL~~e---ICgGLPLALk 331 (1221)
T 1vt4_I 274 FKQVTDFLS--AATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR--P---QDLPRE---VLTTNPRRLS 331 (1221)
T ss_dssp CSHHHHHHH--HHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC--T---TTHHHH---HCCCCHHHHH
T ss_pred ChHHHHhcC--CCeEEEecCccccCCcCHHHHHHHHHHHc-CCC--H---HHHHHH---HhCCCHHHHH
Confidence 999876443 22356666 899999999999984 322 1 123333 3999999984
No 6
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.92 E-value=1.6e-25 Score=220.98 Aligned_cols=188 Identities=23% Similarity=0.283 Sum_probs=133.0
Q ss_pred CCCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhh---hcCCc-ceEEEEeccccccCCCChH
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQF---TGEFD-GSCFMSDVRRNSETGGGLE 217 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~---~~~f~-~~~~~~~~~~~~~~~~~~~ 217 (349)
..+..||||+.++++|.++|... +++.++|+|+||||+||||||.+++++. ...|+ .++|+. +... ...
T Consensus 121 ~~~~~~vGR~~~l~~L~~~L~~~-~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~-~~~~-----~~~ 193 (591)
T 1z6t_A 121 QRPVVFVTRKKLVNAIQQKLSKL-KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVS-VGKQ-----DKS 193 (591)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTS-TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEE-EESC-----CHH
T ss_pred CCCCeecccHHHHHHHHHHHhcc-cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEE-CCCC-----chH
Confidence 45678999999999999999865 4568999999999999999999999864 66786 566665 3222 222
Q ss_pred HHHHHH---HHHhhccccc--ccC---CCchHHHHHHhCC--CeEEEEEeCCCChhHHHHHhcccCCCCCCcEEEEEeCC
Q 037291 218 HLQKEM---LSTILSEKLE--VAG---ANIPHFTKERVWR--MKVLIVLDDVNEVGQLEGLIGELDQFGPGSRIVVTTRD 287 (349)
Q Consensus 218 ~l~~~l---l~~~~~~~~~--~~~---~~~~~~~~~~l~~--k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IIiTtR~ 287 (349)
.+...+ +..+...... ... +.+...+...+.+ +++||||||+|+..+++.+ +++++||||||+
T Consensus 194 ~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~ 266 (591)
T 1z6t_A 194 GLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRD 266 (591)
T ss_dssp HHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESC
T ss_pred HHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCC
Confidence 333333 3333211111 111 2334555666654 7899999999987765543 678999999999
Q ss_pred hhHHHhcCCCCCcEEEc---CCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCccccC
Q 037291 288 KGVLEKFRGEEKKIHRV---NGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNPLVLK 349 (349)
Q Consensus 288 ~~~~~~~~~~~~~~~~l---~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLalk 349 (349)
..++..+. ...+++ ++|+.+||++||...++... ....+.+.+|+++|+|+||||+
T Consensus 267 ~~~~~~~~---~~~~~v~~l~~L~~~ea~~L~~~~~~~~~---~~~~~~~~~i~~~~~G~PLal~ 325 (591)
T 1z6t_A 267 KSVTDSVM---GPKYVVPVESSLGKEKGLEILSLFVNMKK---ADLPEQAHSIIKECKGSPLVVS 325 (591)
T ss_dssp GGGGTTCC---SCEEEEECCSSCCHHHHHHHHHHHHTSCG---GGSCTHHHHHHHHHTTCHHHHH
T ss_pred cHHHHhcC---CCceEeecCCCCCHHHHHHHHHHHhCCCc---ccccHHHHHHHHHhCCCcHHHH
Confidence 98876543 234554 58999999999999886421 2223468899999999999984
No 7
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.84 E-value=3.3e-22 Score=162.32 Aligned_cols=99 Identities=20% Similarity=0.326 Sum_probs=85.8
Q ss_pred CCcccccCCccccHHHHHHHhhCceEEEEecCCCCCchhhHHHHHHHHHhhhhCCCeEEEEeeecCCcccccccCchHHH
Q 037291 1 MDDEKLRRGDEISDALLNAIQGSKISVVIFSKDYGSSKWCLNELVKILECKHTNRQIIIPVFYGVSPSDVRHQTGIFKHG 80 (349)
Q Consensus 1 ~d~~~~~~g~~~~~~i~~ai~~s~~~ivv~S~~y~~S~~cl~El~~i~~~~~~~~~~vlPvfy~v~p~~vr~~~g~~~~~ 80 (349)
+|+.++.+|+.|.++|.+||++|+++|+|+|++|++|.||++||.++++|...+++.|+||||+|+|++|++|.|.|++.
T Consensus 52 ~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~El~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~ 131 (154)
T 3h16_A 52 YDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADK 131 (154)
T ss_dssp CGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHHHHHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSS
T ss_pred EcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHHHHHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHH
Confidence 47788999999999999999999999999999999999999999999999888888999999999999999999999988
Q ss_pred HHHhHhhcccChHHHHHHHHHHHH
Q 037291 81 FDQLKQHFEEKPEMVQRWRDALRE 104 (349)
Q Consensus 81 ~~~~~~~~~~~~~~v~~wr~al~~ 104 (349)
|....... .+.++.+.|.+
T Consensus 132 ~~~~~~~~-----~~~~ia~~l~~ 150 (154)
T 3h16_A 132 LAFNTSTK-----SVDEIVADLMA 150 (154)
T ss_dssp CCEETTTS-----CHHHHHHHHHH
T ss_pred HhhhcCcc-----cHHHHHHHHHH
Confidence 76643321 24555555544
No 8
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.64 E-value=1.4e-17 Score=133.08 Aligned_cols=99 Identities=19% Similarity=0.310 Sum_probs=65.6
Q ss_pred CCcccccCCccccHHHHHHHhhCceEEEEecCCCCCchhhHHHHHHHHHhhhhCCCeEEEEeeecCCccc----ccccCc
Q 037291 1 MDDEKLRRGDEISDALLNAIQGSKISVVIFSKDYGSSKWCLNELVKILECKHTNRQIIIPVFYGVSPSDV----RHQTGI 76 (349)
Q Consensus 1 ~d~~~~~~g~~~~~~i~~ai~~s~~~ivv~S~~y~~S~~cl~El~~i~~~~~~~~~~vlPvfy~v~p~~v----r~~~g~ 76 (349)
+|+.++.+|+.|.++|.+||++|+++|+|||++|++|.||+.||..++.+...+...||||||+|+++++ +.....
T Consensus 43 l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc~~El~~al~~~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~i 122 (146)
T 3ub2_A 43 LQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCKYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYV 122 (146)
T ss_dssp ----------CCCEEECCTTCCEEEEEEEECHHHHHCHHHHHHHHHHHHTSSSSSSEEEEEECSCCGGGSCGGGGGSCCE
T ss_pred EECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHHHHHHHHHHHHHhhcCCcEEEEEcCCChhhCCHHHhCeeee
Confidence 3788999999999999999999999999999999999999999999999874444478899999986655 333221
Q ss_pred hHHHHHHhHhhcccChHHHHHHHHHH
Q 037291 77 FKHGFDQLKQHFEEKPEMVQRWRDAL 102 (349)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~v~~wr~al 102 (349)
.. ..+...+....+.|.+|++||
T Consensus 123 d~---~~~d~~f~~l~~~v~~~~~~~ 145 (146)
T 3ub2_A 123 DG---RGPDGGFRQVKEAVMRYLQTL 145 (146)
T ss_dssp ET---TSGGGGHHHHHHHHHHHHTTC
T ss_pred ec---cChHhhHHHHHHHHHHHHHhc
Confidence 11 112222222234578887764
No 9
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.63 E-value=1.7e-15 Score=142.39 Aligned_cols=198 Identities=13% Similarity=0.087 Sum_probs=124.0
Q ss_pred CCCCCcccccchhhhHHHhh-hhcC-C--CCeeEEEE--eccCccchHHHHHHHHHhhhcC-----Ccc-eEEEEecccc
Q 037291 142 DSSNGLVGLNSRIEQIKPFL-CMDL-S--DTVQIVGI--WGMGGIGKTTLAEAIFDQFTGE-----FDG-SCFMSDVRRN 209 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L-~~~~-~--~~~~~i~I--~G~~GiGKTtLa~~~~~~~~~~-----f~~-~~~~~~~~~~ 209 (349)
..+..|+||+.+++.+..+| .... . ...+.+.| +|++|+||||||+.+++..... +.. .+|+. .
T Consensus 19 ~~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~----~ 94 (412)
T 1w5s_A 19 YIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN----A 94 (412)
T ss_dssp CCCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE----G
T ss_pred cCCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE----C
Confidence 34578999999999999998 5321 1 23456667 9999999999999999876542 222 34443 2
Q ss_pred ccCCCChHHHHHHHHHHhhccccccc-C-CCchHHHHHHhC--CCeEEEEEeCCCCh--------hHHHHHhcccCCC--
Q 037291 210 SETGGGLEHLQKEMLSTILSEKLEVA-G-ANIPHFTKERVW--RMKVLIVLDDVNEV--------GQLEGLIGELDQF-- 275 (349)
Q Consensus 210 ~~~~~~~~~l~~~ll~~~~~~~~~~~-~-~~~~~~~~~~l~--~k~~LlVlDdv~~~--------~~~~~l~~~~~~~-- 275 (349)
.. ......++..++.++........ . ..+...+.+.+. +++++|||||++.. +.+..+...+...
T Consensus 95 ~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~ 173 (412)
T 1w5s_A 95 FN-APNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPS 173 (412)
T ss_dssp GG-CCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCC
T ss_pred CC-CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhccc
Confidence 22 45667788888887754321111 1 222344455553 67999999999643 3344343333221
Q ss_pred -C--CCcEEEEEeCChhHHHhc-------CCCCCcEEEcCCCCHHHHHHHHHhhh---cCCCCCCchHHHHHHHHHHHhc
Q 037291 276 -G--PGSRIVVTTRDKGVLEKF-------RGEEKKIHRVNGLEFEEAFEHFCNFA---FKENHCPTNLNWHSRRVVEYAK 342 (349)
Q Consensus 276 -~--~gs~IIiTtR~~~~~~~~-------~~~~~~~~~l~~L~~~ea~~Lf~~~a---~~~~~~~~~~~~~~~~i~~~~~ 342 (349)
+ ....+|+||++..+...+ .......+++++|+.+++.++|...+ +..... ..+.+..+++.++
T Consensus 174 ~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~---~~~~~~~i~~~~~ 250 (412)
T 1w5s_A 174 RDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVW---EPRHLELISDVYG 250 (412)
T ss_dssp TTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSC---CHHHHHHHHHHHC
T ss_pred CCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCC---ChHHHHHHHHHHH
Confidence 2 345588888765532111 01122349999999999999997653 322111 1356788999999
Q ss_pred ------CCccc
Q 037291 343 ------GNPLV 347 (349)
Q Consensus 343 ------G~PLa 347 (349)
|+|..
T Consensus 251 ~~~~~~G~p~~ 261 (412)
T 1w5s_A 251 EDKGGDGSARR 261 (412)
T ss_dssp GGGTSCCCHHH
T ss_pred HhccCCCcHHH
Confidence 99964
No 10
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.61 E-value=2.3e-15 Score=138.15 Aligned_cols=193 Identities=17% Similarity=0.154 Sum_probs=118.3
Q ss_pred CCCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccc--cCCCChHHH
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNS--ETGGGLEHL 219 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~--~~~~~~~~l 219 (349)
..+..|+||+.+++.|.+++... +++.|+|++|+|||||+++++++.. .+|+. ..... ........+
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~~-----~~v~i~G~~G~GKT~Ll~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~ 77 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLENY-----PLTLLLGIRRVGKSSLLRAFLNERP-----GILID-CRELYAERGHITREEL 77 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHHC-----SEEEEECCTTSSHHHHHHHHHHHSS-----EEEEE-HHHHHHTTTCBCHHHH
T ss_pred CChHhcCChHHHHHHHHHHHhcC-----CeEEEECCCcCCHHHHHHHHHHHcC-----cEEEE-eecccccccCCCHHHH
Confidence 44567999999999999988753 7899999999999999999998752 45554 22211 001234455
Q ss_pred HHHHHHHhhcc--------------cccc----cC-CCchHHHHHHhCC-CeEEEEEeCCCChh--------H-HHHHhc
Q 037291 220 QKEMLSTILSE--------------KLEV----AG-ANIPHFTKERVWR-MKVLIVLDDVNEVG--------Q-LEGLIG 270 (349)
Q Consensus 220 ~~~ll~~~~~~--------------~~~~----~~-~~~~~~~~~~l~~-k~~LlVlDdv~~~~--------~-~~~l~~ 270 (349)
...+...+... .... .. ..+...+.+.... ++++|||||++... . +..+..
T Consensus 78 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~ 157 (350)
T 2qen_A 78 IKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAY 157 (350)
T ss_dssp HHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHH
Confidence 55554443210 0000 01 1122333333332 38999999996533 2 222222
Q ss_pred ccCCCCCCcEEEEEeCChhHHHhc----------CCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHH
Q 037291 271 ELDQFGPGSRIVVTTRDKGVLEKF----------RGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEY 340 (349)
Q Consensus 271 ~~~~~~~gs~IIiTtR~~~~~~~~----------~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~ 340 (349)
.... .++.++|+|++....+..+ .......+++.+|+.+|+.+++....-....... .+.+..+++.
T Consensus 158 ~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~--~~~~~~i~~~ 234 (350)
T 2qen_A 158 AYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVP--ENEIEEAVEL 234 (350)
T ss_dssp HHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCC--HHHHHHHHHH
T ss_pred HHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHH
Confidence 2111 2477899999876543321 1012358999999999999999875422111111 2457889999
Q ss_pred hcCCcccc
Q 037291 341 AKGNPLVL 348 (349)
Q Consensus 341 ~~G~PLal 348 (349)
|+|+|+++
T Consensus 235 tgG~P~~l 242 (350)
T 2qen_A 235 LDGIPGWL 242 (350)
T ss_dssp HTTCHHHH
T ss_pred hCCCHHHH
Confidence 99999986
No 11
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.58 E-value=8.7e-15 Score=134.55 Aligned_cols=192 Identities=17% Similarity=0.148 Sum_probs=113.0
Q ss_pred CCCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccc-cCCCChHHHH
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNS-ETGGGLEHLQ 220 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~-~~~~~~~~l~ 220 (349)
..+..|+||+.+++.|.+ +.. +++.|+|++|+|||+|++++++..... .+|+. ..... ....+...+.
T Consensus 10 ~~~~~~~gR~~el~~L~~-l~~------~~v~i~G~~G~GKT~L~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~ 78 (357)
T 2fna_A 10 DNRKDFFDREKEIEKLKG-LRA------PITLVLGLRRTGKSSIIKIGINELNLP---YIYLD-LRKFEERNYISYKDFL 78 (357)
T ss_dssp CSGGGSCCCHHHHHHHHH-TCS------SEEEEEESTTSSHHHHHHHHHHHHTCC---EEEEE-GGGGTTCSCCCHHHHH
T ss_pred CCHHHhcChHHHHHHHHH-hcC------CcEEEECCCCCCHHHHHHHHHHhcCCC---EEEEE-chhhccccCCCHHHHH
Confidence 455679999999999998 743 689999999999999999999886432 45554 22210 0012233444
Q ss_pred HHHHHHhhc-------------c----c-----cccc----CCCchHHHHHHhCC---CeEEEEEeCCCChh-----HHH
Q 037291 221 KEMLSTILS-------------E----K-----LEVA----GANIPHFTKERVWR---MKVLIVLDDVNEVG-----QLE 266 (349)
Q Consensus 221 ~~ll~~~~~-------------~----~-----~~~~----~~~~~~~~~~~l~~---k~~LlVlDdv~~~~-----~~~ 266 (349)
..+...+.. . . .... .......+.+.+.. ++++|||||++... ++.
T Consensus 79 ~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~ 158 (357)
T 2fna_A 79 LELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLL 158 (357)
T ss_dssp HHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCH
T ss_pred HHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHH
Confidence 443333211 0 0 0000 11112223333321 49999999996432 222
Q ss_pred HHhcccCCCCCCcEEEEEeCChhHHHhc----------CCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHH
Q 037291 267 GLIGELDQFGPGSRIVVTTRDKGVLEKF----------RGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRR 336 (349)
Q Consensus 267 ~l~~~~~~~~~gs~IIiTtR~~~~~~~~----------~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~ 336 (349)
.++..+....++.++|+|++....+..+ .......+++.+|+.+|+.+++............. ...
T Consensus 159 ~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~----~~~ 234 (357)
T 2fna_A 159 PALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD----YEV 234 (357)
T ss_dssp HHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC----HHH
T ss_pred HHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc----HHH
Confidence 2222111112467899999987543321 10123689999999999999998754211111222 278
Q ss_pred HHHHhcCCcccc
Q 037291 337 VVEYAKGNPLVL 348 (349)
Q Consensus 337 i~~~~~G~PLal 348 (349)
+++.|+|+|+++
T Consensus 235 i~~~t~G~P~~l 246 (357)
T 2fna_A 235 VYEKIGGIPGWL 246 (357)
T ss_dssp HHHHHCSCHHHH
T ss_pred HHHHhCCCHHHH
Confidence 999999999986
No 12
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.51 E-value=1.5e-13 Score=118.93 Aligned_cols=192 Identities=13% Similarity=0.103 Sum_probs=114.9
Q ss_pred CCCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHH
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQK 221 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 221 (349)
.....++||+..++.+..++... ...+.+.|+|++|+||||||+.+++.....+.....- ...... ..
T Consensus 20 ~~~~~~~g~~~~~~~l~~~l~~~--~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~---------~~~~~~-~~ 87 (250)
T 1njg_A 20 QTFADVVGQEHVLTALANGLSLG--RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP---------CGVCDN-CR 87 (250)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHT--CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSC---------CSCSHH-HH
T ss_pred ccHHHHhCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC---------CcccHH-HH
Confidence 33456999999999999999765 2235788999999999999999998765432110000 000000 00
Q ss_pred HHHHHhhccccccc--CCCchH---HHHHH-----hCCCeEEEEEeCCCC--hhHHHHHhcccCCCCCCcEEEEEeCChh
Q 037291 222 EMLSTILSEKLEVA--GANIPH---FTKER-----VWRMKVLIVLDDVNE--VGQLEGLIGELDQFGPGSRIVVTTRDKG 289 (349)
Q Consensus 222 ~ll~~~~~~~~~~~--~~~~~~---~~~~~-----l~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IIiTtR~~~ 289 (349)
.+............ ...... .+.+. ..+++.+|||||++. ...++.+...+.....+..+|+||+...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 88 EIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 167 (250)
T ss_dssp HHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGG
T ss_pred HHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 00000000000000 000001 11111 134679999999964 4556666666655556788888887654
Q ss_pred H-HHhcCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCcccc
Q 037291 290 V-LEKFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNPLVL 348 (349)
Q Consensus 290 ~-~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal 348 (349)
. ...+.. ....+++++++.++..+++...+....... ..+..+.+++.++|+|..+
T Consensus 168 ~~~~~l~~-r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~G~~~~~ 224 (250)
T 1njg_A 168 KLPVTILS-RCLQFHLKALDVEQIRHQLEHILNEEHIAH--EPRALQLLARAAEGSLRDA 224 (250)
T ss_dssp GSCHHHHT-TSEEEECCCCCHHHHHHHHHHHHHHTTCCB--CHHHHHHHHHHHTTCHHHH
T ss_pred hCCHHHHH-HhhhccCCCCCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 2 111111 346899999999999999988774432221 1245788999999999764
No 13
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.50 E-value=1.8e-13 Score=127.26 Aligned_cols=191 Identities=12% Similarity=0.130 Sum_probs=122.7
Q ss_pred CCCcccccchhhhHHHhhhhc-CCCCeeEEEEeccCccchHHHHHHHHHhhhcC------C-c-ceEEEEeccccccCCC
Q 037291 144 SNGLVGLNSRIEQIKPFLCMD-LSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGE------F-D-GSCFMSDVRRNSETGG 214 (349)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~-~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~------f-~-~~~~~~~~~~~~~~~~ 214 (349)
+..|+||+.+++.+..++... .....+.+.|+|++|+|||+||+.+++..... + . ..+|+. ... ..
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~-~~~----~~ 93 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN-CRE----VG 93 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE-HHH----HC
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE-Ccc----CC
Confidence 377999999999999888652 13345789999999999999999999976432 2 2 233443 221 22
Q ss_pred -ChHHHHHHHHHHhhcccccccC---CCchHHHHHHhCCCeEEEEEeCCCChhH-------HHHHhcccCCCCCCcEEEE
Q 037291 215 -GLEHLQKEMLSTILSEKLEVAG---ANIPHFTKERVWRMKVLIVLDDVNEVGQ-------LEGLIGELDQFGPGSRIVV 283 (349)
Q Consensus 215 -~~~~l~~~ll~~~~~~~~~~~~---~~~~~~~~~~l~~k~~LlVlDdv~~~~~-------~~~l~~~~~~~~~gs~IIi 283 (349)
....+...++..+.+....... ..+...+.+.+..++.+|||||++.... +..+... . .+..+|+
T Consensus 94 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~---~-~~~~iI~ 169 (384)
T 2qby_B 94 GTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRS---D-ANISVIM 169 (384)
T ss_dssp SCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTS---S-SCEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcC---C-cceEEEE
Confidence 5667777777777443222211 2334556666776666999999965432 2233322 2 6778999
Q ss_pred EeCChhHH----HhcCCCCCcEEEcCCCCHHHHHHHHHhhh---cCCCCCCchHHHHHHHHHHHhc---CCcc
Q 037291 284 TTRDKGVL----EKFRGEEKKIHRVNGLEFEEAFEHFCNFA---FKENHCPTNLNWHSRRVVEYAK---GNPL 346 (349)
Q Consensus 284 TtR~~~~~----~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a---~~~~~~~~~~~~~~~~i~~~~~---G~PL 346 (349)
||+..... ..+.......+++++++.++..++|...+ +.....++ +..+.+++.++ |.|.
T Consensus 170 ~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r 239 (384)
T 2qby_B 170 ISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDAR 239 (384)
T ss_dssp ECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHH
T ss_pred EECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCHH
Confidence 98865321 11100012389999999999999999874 22222222 34677888887 8775
No 14
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.47 E-value=3e-13 Score=125.70 Aligned_cols=197 Identities=11% Similarity=0.050 Sum_probs=120.1
Q ss_pred CCCCCcccccchhhhHHHhhhhc-CCCCeeEEEEeccCccchHHHHHHHHHhhhcCC-----cc-eEEEEeccccccCCC
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMD-LSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEF-----DG-SCFMSDVRRNSETGG 214 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~-~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f-----~~-~~~~~~~~~~~~~~~ 214 (349)
..+..++||+.+++.+..++... .....+.+.|+|++|+||||||+.+++.....+ .. .+++. . .. ..
T Consensus 16 ~~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~-~---~~-~~ 90 (387)
T 2v1u_A 16 YVPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN-A---RH-RE 90 (387)
T ss_dssp CCCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE-T---TT-SC
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE-C---Cc-CC
Confidence 34578999999999999988542 123467888999999999999999998764321 22 23333 2 22 44
Q ss_pred ChHHHHHHHHHHhhcccccccC--CCchHHHHHHh--CCCeEEEEEeCCCChhH-------HHHHhcccCCC--CCCcEE
Q 037291 215 GLEHLQKEMLSTILSEKLEVAG--ANIPHFTKERV--WRMKVLIVLDDVNEVGQ-------LEGLIGELDQF--GPGSRI 281 (349)
Q Consensus 215 ~~~~l~~~ll~~~~~~~~~~~~--~~~~~~~~~~l--~~k~~LlVlDdv~~~~~-------~~~l~~~~~~~--~~gs~I 281 (349)
+...+...++..+......... ..+...+.+.+ .+++.+||||+++.... +..+....... ..+..+
T Consensus 91 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 170 (387)
T 2v1u_A 91 TPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSL 170 (387)
T ss_dssp SHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEE
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEE
Confidence 5667777787777442211111 22234444455 35689999999975432 22223222211 345577
Q ss_pred EEEeCChhHHH----h-cCCCCCcEEEcCCCCHHHHHHHHHhhhc---CCCCCCchHHHHHHHHHHHhc---CCcc
Q 037291 282 VVTTRDKGVLE----K-FRGEEKKIHRVNGLEFEEAFEHFCNFAF---KENHCPTNLNWHSRRVVEYAK---GNPL 346 (349)
Q Consensus 282 IiTtR~~~~~~----~-~~~~~~~~~~l~~L~~~ea~~Lf~~~a~---~~~~~~~~~~~~~~~i~~~~~---G~PL 346 (349)
|+||+...... . ........+.+++++.++..+++...+- .....++ +..+.++++++ |.|-
T Consensus 171 I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r 243 (387)
T 2v1u_A 171 VGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDAR 243 (387)
T ss_dssp EEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHH
T ss_pred EEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHH
Confidence 77777652211 1 1111225899999999999999987742 2222222 34677888888 9883
No 15
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.45 E-value=1.8e-13 Score=127.17 Aligned_cols=200 Identities=15% Similarity=0.113 Sum_probs=118.8
Q ss_pred CCCCCcccccchhhhHHHhhhhc-CCCCeeEEEEeccCccchHHHHHHHHHhhhcCC--c-ceEEEEeccccccCCCChH
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMD-LSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEF--D-GSCFMSDVRRNSETGGGLE 217 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~-~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f--~-~~~~~~~~~~~~~~~~~~~ 217 (349)
..+..|+||+.+++.+..++... .....+.+.|+|++|+||||||+.+++.....+ . ..+|+. .. . .....
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~-~~---~-~~~~~ 91 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN-TR---Q-IDTPY 91 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE-HH---H-HCSHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE-CC---C-CCCHH
Confidence 44578999999999999988752 123457889999999999999999999875543 2 234443 21 1 22344
Q ss_pred HHHHHHHHHhhccccccc-C-CCchHHHHHHhC--CCeEEEEEeCCCC------hhHHHHHhcccCC-CCCCcEEEEEeC
Q 037291 218 HLQKEMLSTILSEKLEVA-G-ANIPHFTKERVW--RMKVLIVLDDVNE------VGQLEGLIGELDQ-FGPGSRIVVTTR 286 (349)
Q Consensus 218 ~l~~~ll~~~~~~~~~~~-~-~~~~~~~~~~l~--~k~~LlVlDdv~~------~~~~~~l~~~~~~-~~~gs~IIiTtR 286 (349)
.+...++..+........ . ..+...+.+.+. +++.+||||+++. ...+..+...+.. ...+..+|+||+
T Consensus 92 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~ 171 (386)
T 2qby_A 92 RVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITN 171 (386)
T ss_dssp HHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEES
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEEC
Confidence 555555554422111100 0 112233444443 4589999999954 2334444433321 134567788887
Q ss_pred ChhHHHhcC-----CCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhc---CCcc
Q 037291 287 DKGVLEKFR-----GEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAK---GNPL 346 (349)
Q Consensus 287 ~~~~~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~---G~PL 346 (349)
+......+. ......+++++++.++..+++...+........-..+..+.+++.++ |.|.
T Consensus 172 ~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r 239 (386)
T 2qby_A 172 DVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDAR 239 (386)
T ss_dssp CGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHH
T ss_pred CCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHH
Confidence 664322221 11225899999999999999987642111111112345677778887 9886
No 16
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.45 E-value=4.7e-13 Score=114.32 Aligned_cols=183 Identities=14% Similarity=0.181 Sum_probs=113.6
Q ss_pred CCCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcC-CcceEEEEeccccccCCCChHHHH
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGE-FDGSCFMSDVRRNSETGGGLEHLQ 220 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~ 220 (349)
.....++|++..++.+..++... ..+.+.|+|++|+|||+||+.+++.+... +...+...+. +. ..+...+.
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~---~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~ 86 (226)
T 2chg_A 14 RTLDEVVGQDEVIQRLKGYVERK---NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA---SD-ERGIDVVR 86 (226)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTT---CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEET---TC-TTCHHHHH
T ss_pred CCHHHHcCcHHHHHHHHHHHhCC---CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecc---cc-ccChHHHH
Confidence 34467999999999999998765 33348899999999999999999876433 2222222211 11 22222222
Q ss_pred HHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCCh--hHHHHHhcccCCCCCCcEEEEEeCChhH-HHhcCCC
Q 037291 221 KEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEV--GQLEGLIGELDQFGPGSRIVVTTRDKGV-LEKFRGE 297 (349)
Q Consensus 221 ~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTtR~~~~-~~~~~~~ 297 (349)
..+....... .....++.+|||||++.. ...+.+...+.....+.++|+||+.... ...+..
T Consensus 87 -~~~~~~~~~~-------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~- 151 (226)
T 2chg_A 87 -HKIKEFARTA-------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQS- 151 (226)
T ss_dssp -HHHHHHHTSC-------------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHT-
T ss_pred -HHHHHHhccc-------------CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHH-
Confidence 1111111100 001256889999999654 3455555555444567888988876532 111111
Q ss_pred CCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCcccc
Q 037291 298 EKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNPLVL 348 (349)
Q Consensus 298 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal 348 (349)
....+++.+++.++..+++...+...+... ..+..+.+++.++|+|..+
T Consensus 152 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~g~~r~l 200 (226)
T 2chg_A 152 RCAVFRFKPVPKEAMKKRLLEICEKEGVKI--TEDGLEALIYISGGDFRKA 200 (226)
T ss_dssp TSEEEECCCCCHHHHHHHHHHHHHHHTCCB--CHHHHHHHHHHHTTCHHHH
T ss_pred hCceeecCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 234899999999999999988764322211 1245678889999999753
No 17
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.43 E-value=1.7e-12 Score=120.82 Aligned_cols=199 Identities=12% Similarity=0.116 Sum_probs=124.2
Q ss_pred CCCCcccccchhhhHHHhhhhc---CCCCeeEEEEeccCccchHHHHHHHHHhhhcCC-cceEEEEeccccccCCCChHH
Q 037291 143 SSNGLVGLNSRIEQIKPFLCMD---LSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEF-DGSCFMSDVRRNSETGGGLEH 218 (349)
Q Consensus 143 ~~~~~vGr~~~~~~l~~~L~~~---~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~ 218 (349)
.+..++||+.+++.+..++... .....+.+.|+|++|+|||||++.+++...... ...+++. ... ......
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~----~~~-~~~~~~ 89 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN----GFI-YRNFTA 89 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE----TTT-CCSHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe----Ccc-CCCHHH
Confidence 3478999999999999988752 122234899999999999999999999876542 2334443 222 345667
Q ss_pred HHHHHHHHhhccccccc-C-CCchHHHHHHh--CCCeEEEEEeCCCCh--hHHHHHhcccCCCC----CCcEEEEEeCCh
Q 037291 219 LQKEMLSTILSEKLEVA-G-ANIPHFTKERV--WRMKVLIVLDDVNEV--GQLEGLIGELDQFG----PGSRIVVTTRDK 288 (349)
Q Consensus 219 l~~~ll~~~~~~~~~~~-~-~~~~~~~~~~l--~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~----~gs~IIiTtR~~ 288 (349)
+...++..+........ . ..+...+.+.+ .+++.+||||+++.. ..+..+...+.... .+..+|++|++.
T Consensus 90 ~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 90 IIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp HHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred HHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 77777776643211111 0 12223333333 356899999999653 44555554443222 466788888776
Q ss_pred hHHHhcCC-----CCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHh---------cCCcc
Q 037291 289 GVLEKFRG-----EEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYA---------KGNPL 346 (349)
Q Consensus 289 ~~~~~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~---------~G~PL 346 (349)
.....+.. .....+.+++++.++..+++...+........-..+..+.+++.+ +|.|.
T Consensus 170 ~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r 241 (389)
T 1fnn_A 170 AVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDAR 241 (389)
T ss_dssp HHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHH
T ss_pred hHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHH
Confidence 44332210 012479999999999999998765320001111235678889999 78874
No 18
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.41 E-value=9e-14 Score=112.71 Aligned_cols=68 Identities=16% Similarity=0.220 Sum_probs=61.2
Q ss_pred CCcccccCCccccHHHHHHHhhCceEEEEecCCCC-CchhhHHHHHHHHHhh-hhCCCeEEEEeeecCCc
Q 037291 1 MDDEKLRRGDEISDALLNAIQGSKISVVIFSKDYG-SSKWCLNELVKILECK-HTNRQIIIPVFYGVSPS 68 (349)
Q Consensus 1 ~d~~~~~~g~~~~~~i~~ai~~s~~~ivv~S~~y~-~S~~cl~El~~i~~~~-~~~~~~vlPvfy~v~p~ 68 (349)
+|+.++.+|+.|.++|.+||++|+.+|+|+|++|+ .|.||+.|+..++.+. ..++..||||||.-.+.
T Consensus 46 ~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~~ 115 (159)
T 1t3g_A 46 IPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYVVRRGWSIFELETRLRNMLVTGEIKVILIECSELRG 115 (159)
T ss_dssp CHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHHHTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCCS
T ss_pred EEcccccCccchHHHHHHHHHHcCEEEEEEccchhhcChHHHHHHHHHHHHHHhcCCCEEEEEEeccccc
Confidence 36778999999999999999999999999999997 9999999999999887 56678999999876554
No 19
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.39 E-value=1.9e-14 Score=118.65 Aligned_cols=65 Identities=22% Similarity=0.365 Sum_probs=54.9
Q ss_pred CcccccCCccccHHHHHHHhhCceEEEEecCCCCCchhhHHHHHHHHHhh-hhCCCeEEEEeeecC
Q 037291 2 DDEKLRRGDEISDALLNAIQGSKISVVIFSKDYGSSKWCLNELVKILECK-HTNRQIIIPVFYGVS 66 (349)
Q Consensus 2 d~~~~~~g~~~~~~i~~ai~~s~~~ivv~S~~y~~S~~cl~El~~i~~~~-~~~~~~vlPvfy~v~ 66 (349)
|+.++.+|++|.++|.+||++|+++|+|+|++|++|.||+.||..++.+. +.++.+||||||+--
T Consensus 70 ~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~wc~~El~~a~~~~~~~~~~~vIpV~~~~i 135 (178)
T 2j67_A 70 YESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEWCHYEFYFAHHNLFHENSDHIILILLEPI 135 (178)
T ss_dssp HHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTGGGTHHHHTTCC-------CEEEEESSCC
T ss_pred ecccCCCCccHHHHHHHHHHhCCEEEEEecccccccchHHHHHHHHHHHHHhcCCCEEEEEEecCC
Confidence 57789999999999999999999999999999999999999999998654 455678999999743
No 20
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.39 E-value=1.6e-14 Score=117.33 Aligned_cols=66 Identities=23% Similarity=0.264 Sum_probs=59.5
Q ss_pred CcccccCCccccHHHHHHHh-hCceEEEEecCCCCCchhhHHHHHHHHHhh-hhCCCeEEEEeeecCC
Q 037291 2 DDEKLRRGDEISDALLNAIQ-GSKISVVIFSKDYGSSKWCLNELVKILECK-HTNRQIIIPVFYGVSP 67 (349)
Q Consensus 2 d~~~~~~g~~~~~~i~~ai~-~s~~~ivv~S~~y~~S~~cl~El~~i~~~~-~~~~~~vlPvfy~v~p 67 (349)
|+.++.+|++|.++|.+||+ +|+++|+|+|++|++|.||+.||..++.+. +.+++.||||||+.-+
T Consensus 50 ~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~~El~~a~~~~~~~~~~~vIpV~~~~~~ 117 (160)
T 2js7_A 50 SDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKECDFQTKFALSLSPGAHQKRLIPIKYKAMK 117 (160)
T ss_dssp SCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHHHHHHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred eCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHHHHHHHHHHHHHHccCCCEEEEEEEcccc
Confidence 67889999999999999999 799999999999999999999999999876 3445689999998654
No 21
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.39 E-value=9.1e-15 Score=117.47 Aligned_cols=67 Identities=19% Similarity=0.293 Sum_probs=58.7
Q ss_pred CcccccCCccccHHHHHHHhhCceEEEEecCCCCCchhhHHHHHHHHH-hhhhCCCeEEEEeee-cCCc
Q 037291 2 DDEKLRRGDEISDALLNAIQGSKISVVIFSKDYGSSKWCLNELVKILE-CKHTNRQIIIPVFYG-VSPS 68 (349)
Q Consensus 2 d~~~~~~g~~~~~~i~~ai~~s~~~ivv~S~~y~~S~~cl~El~~i~~-~~~~~~~~vlPvfy~-v~p~ 68 (349)
|+.++.+|+.+.++|.+||++|+++|+|+|++|++|.||+.||..++. +.+.++..||||||+ +++.
T Consensus 40 ~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~~El~~a~~~~~~~~~~~vIpv~~~~i~~~ 108 (149)
T 1fyx_A 40 HKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXKYELDFSHFRLFDENNDAAILILLEPIEKK 108 (149)
T ss_dssp HHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHHHHSCCSCCTTCGGGTTCCEEEESSCCCTT
T ss_pred ccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHHHHHHHHHHHHHhcCCCEEEEEEecCCChh
Confidence 677899999999999999999999999999999999999999999885 335567789999996 4443
No 22
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.29 E-value=1e-11 Score=112.49 Aligned_cols=181 Identities=17% Similarity=0.269 Sum_probs=112.4
Q ss_pred CCCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcC-Ccc-eEEEEeccccccCCCChHHH
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGE-FDG-SCFMSDVRRNSETGGGLEHL 219 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~-f~~-~~~~~~~~~~~~~~~~~~~l 219 (349)
.....++|++..++.+..++... ..+.+.|+|++|+|||++|+.+++.+... +.. .+++. .+. ..+...
T Consensus 18 ~~~~~~~g~~~~~~~l~~~l~~~---~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~----~~~-~~~~~~- 88 (323)
T 1sxj_B 18 QVLSDIVGNKETIDRLQQIAKDG---NMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELN----ASD-DRGIDV- 88 (323)
T ss_dssp SSGGGCCSCTHHHHHHHHHHHSC---CCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEEC----TTS-CCSHHH-
T ss_pred CCHHHHHCCHHHHHHHHHHHHcC---CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEec----Ccc-ccChHH-
Confidence 33467999999999999998764 33338899999999999999999986432 222 22222 111 112222
Q ss_pred HHHHHHHhhcccccccCCCchHHHHHHh-CCCeEEEEEeCCCCh--hHHHHHhcccCCCCCCcEEEEEeCChhH-HHhcC
Q 037291 220 QKEMLSTILSEKLEVAGANIPHFTKERV-WRMKVLIVLDDVNEV--GQLEGLIGELDQFGPGSRIVVTTRDKGV-LEKFR 295 (349)
Q Consensus 220 ~~~ll~~~~~~~~~~~~~~~~~~~~~~l-~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTtR~~~~-~~~~~ 295 (349)
...++..+..... .+ .+++.++||||++.. ...+.+...+.....++++|+||+...- ...+.
T Consensus 89 i~~~~~~~~~~~~-------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~ 155 (323)
T 1sxj_B 89 VRNQIKHFAQKKL-------------HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQ 155 (323)
T ss_dssp HHTHHHHHHHBCC-------------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred HHHHHHHHHhccc-------------cCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHH
Confidence 2222222211000 11 345889999999753 3455555555444567788888876432 12211
Q ss_pred CCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCccc
Q 037291 296 GEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNPLV 347 (349)
Q Consensus 296 ~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLa 347 (349)
. ....+++.+++.++..+++...+...+... ..+.+..+++.++|.|..
T Consensus 156 s-r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~G~~r~ 204 (323)
T 1sxj_B 156 S-QCAILRYSKLSDEDVLKRLLQIIKLEDVKY--TNDGLEAIIFTAEGDMRQ 204 (323)
T ss_dssp T-TSEEEECCCCCHHHHHHHHHHHHHHHTCCB--CHHHHHHHHHHHTTCHHH
T ss_pred h-hceEEeecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHH
Confidence 1 345899999999999999988763222111 124578899999999853
No 23
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.23 E-value=2.2e-11 Score=110.56 Aligned_cols=181 Identities=18% Similarity=0.209 Sum_probs=110.9
Q ss_pred CCCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCC-cc-eEEEEeccccccCCCChHHH
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEF-DG-SCFMSDVRRNSETGGGLEHL 219 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f-~~-~~~~~~~~~~~~~~~~~~~l 219 (349)
.....++|++..++.+..++... ..+.+.|+|++|+||||+|+.+++.+.... .. ...+. . +. ..+.. .
T Consensus 22 ~~~~~~~g~~~~~~~l~~~l~~~---~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~-~---~~-~~~~~-~ 92 (327)
T 1iqp_A 22 QRLDDIVGQEHIVKRLKHYVKTG---SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELN-A---SD-ERGIN-V 92 (327)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHT---CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEE-T---TC-HHHHH-T
T ss_pred CCHHHhhCCHHHHHHHHHHHHcC---CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEee-c---cc-cCchH-H
Confidence 44567999999999999988765 334488999999999999999999764332 11 12221 1 10 00000 0
Q ss_pred HHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCCh--hHHHHHhcccCCCCCCcEEEEEeCChhH-HHhcCC
Q 037291 220 QKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEV--GQLEGLIGELDQFGPGSRIVVTTRDKGV-LEKFRG 296 (349)
Q Consensus 220 ~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTtR~~~~-~~~~~~ 296 (349)
....+....... ....+++.++|+||++.. ...+.+...+.....++++|+||..... ...+..
T Consensus 93 ~~~~~~~~~~~~-------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~s 159 (327)
T 1iqp_A 93 IREKVKEFARTK-------------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQS 159 (327)
T ss_dssp THHHHHHHHHSC-------------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHH
T ss_pred HHHHHHHHHhhC-------------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHh
Confidence 011111100000 001256789999999754 4455666555554567888888876532 111110
Q ss_pred CCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCccc
Q 037291 297 EEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNPLV 347 (349)
Q Consensus 297 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLa 347 (349)
....+++.+++.++..+++...+...+.. -..+..+.+++.++|.|..
T Consensus 160 -r~~~~~~~~l~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~ 207 (327)
T 1iqp_A 160 -RCAIFRFRPLRDEDIAKRLRYIAENEGLE--LTEEGLQAILYIAEGDMRR 207 (327)
T ss_dssp -TEEEEECCCCCHHHHHHHHHHHHHTTTCE--ECHHHHHHHHHHHTTCHHH
T ss_pred -hCcEEEecCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHCCCCHHH
Confidence 23478999999999999998776433221 1234577888999998864
No 24
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.13 E-value=3.7e-10 Score=101.94 Aligned_cols=180 Identities=16% Similarity=0.179 Sum_probs=110.8
Q ss_pred CCCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhc-CCcc-eEEEEeccccccCCCChHHH
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTG-EFDG-SCFMSDVRRNSETGGGLEHL 219 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~-~f~~-~~~~~~~~~~~~~~~~~~~l 219 (349)
.....++|++..++.+..++... ..+.+.|+|++|+|||++|+.+++.+.. .+.. .+.+. ...... ...+...
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~---~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~-~~~~~~-~~~~~~~ 88 (319)
T 2chq_A 14 RTLDEVVGQDEVIQRLKGYVERK---NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN-ASDERG-IDVVRHK 88 (319)
T ss_dssp SSGGGSCSCHHHHHHHHTTTTTT---CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEE-TTSTTC-TTTSSHH
T ss_pred CCHHHHhCCHHHHHHHHHHHhCC---CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEe-CccccC-hHHHHHH
Confidence 34467999999999999988764 3334889999999999999999987632 2221 12222 111100 1111111
Q ss_pred HHHHHHHhhcccccccCCCchHHHHHHh-CCCeEEEEEeCCCCh--hHHHHHhcccCCCCCCcEEEEEeCChh-HHHhcC
Q 037291 220 QKEMLSTILSEKLEVAGANIPHFTKERV-WRMKVLIVLDDVNEV--GQLEGLIGELDQFGPGSRIVVTTRDKG-VLEKFR 295 (349)
Q Consensus 220 ~~~ll~~~~~~~~~~~~~~~~~~~~~~l-~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTtR~~~-~~~~~~ 295 (349)
...+... ..+ .+++.++|+|+++.. ...+.+...+.....+.++|+||.... +...+.
T Consensus 89 ~~~~~~~------------------~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~ 150 (319)
T 2chq_A 89 IKEFART------------------APIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQ 150 (319)
T ss_dssp HHHHHHS------------------CCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHH
T ss_pred HHHHHhc------------------CCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHH
Confidence 1111100 001 245789999999754 445666666665566778888886653 222211
Q ss_pred CCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCccc
Q 037291 296 GEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNPLV 347 (349)
Q Consensus 296 ~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLa 347 (349)
. ....+++.+++.++..+++...+-..+... ..+..+.+++.++|+|..
T Consensus 151 s-r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i--~~~~l~~l~~~~~G~~r~ 199 (319)
T 2chq_A 151 S-RCAVFRFKPVPKEAMKKRLLEICEKEGVKI--TEDGLEALIYISGGDFRK 199 (319)
T ss_dssp T-TCEEEECCCCCHHHHHHHHHHHHHTTCCCB--CHHHHHHHHHTTTTCHHH
T ss_pred h-hCeEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHH
Confidence 1 345899999999999999987764333221 124567788888998753
No 25
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.11 E-value=7.7e-10 Score=102.24 Aligned_cols=191 Identities=13% Similarity=0.112 Sum_probs=111.6
Q ss_pred CCCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHH
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQK 221 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 221 (349)
.....++|++..++.+...+... .....+.|+|++|+||||+|+.+++.+....... .. ..+.-.-..
T Consensus 13 ~~~~~~vg~~~~~~~L~~~l~~~--~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~---------~~-~~~~~~~~~ 80 (373)
T 1jr3_A 13 QTFADVVGQEHVLTALANGLSLG--RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT---------AT-PCGVCDNCR 80 (373)
T ss_dssp CSTTTSCSCHHHHHHHHHHHHHT--CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC---------SS-CCSSSHHHH
T ss_pred CchhhccCcHHHHHHHHHHHHhC--CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC---------CC-CCcccHHHH
Confidence 34467999999999999998765 2235678999999999999999998764322100 00 000000011
Q ss_pred HHHHHhhcc----ccc--ccCCCchHHHHHHh-----CCCeEEEEEeCCCCh--hHHHHHhcccCCCCCCcEEEEEeCCh
Q 037291 222 EMLSTILSE----KLE--VAGANIPHFTKERV-----WRMKVLIVLDDVNEV--GQLEGLIGELDQFGPGSRIVVTTRDK 288 (349)
Q Consensus 222 ~ll~~~~~~----~~~--~~~~~~~~~~~~~l-----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTtR~~ 288 (349)
.+....... ... ...+.+ ..+.+.+ .+++.++|+||++.. ...+.+...+.....+..+|++|...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~ 159 (373)
T 1jr3_A 81 EIEQGRFVDLIEIDAASRTKVEDT-RDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDP 159 (373)
T ss_dssp HHHTSCCSSCEEEETTCSCCSSCH-HHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCG
T ss_pred HHhccCCCceEEecccccCCHHHH-HHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCCh
Confidence 111000000 000 000222 2222222 345789999999643 45566666655545667777777654
Q ss_pred h-HHHhcCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCcccc
Q 037291 289 G-VLEKFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNPLVL 348 (349)
Q Consensus 289 ~-~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal 348 (349)
. +...+.. ....+++.+++.++..+++...+-..+... ..+....+++.++|+|..+
T Consensus 160 ~~l~~~l~s-r~~~i~~~~l~~~~~~~~l~~~~~~~~~~~--~~~a~~~l~~~~~G~~r~~ 217 (373)
T 1jr3_A 160 QKLPVTILS-RCLQFHLKALDVEQIRHQLEHILNEEHIAH--EPRALQLLARAAEGSLRDA 217 (373)
T ss_dssp GGSCHHHHT-TSEEEECCCCCHHHHHHHHHHHHHHHTCCB--CHHHHHHHHHHSSSCHHHH
T ss_pred HhCcHHHHh-heeEeeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHCCCCHHHH
Confidence 3 2121111 347899999999999999987653222111 1245678999999998653
No 26
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.99 E-value=3e-09 Score=96.39 Aligned_cols=176 Identities=14% Similarity=0.145 Sum_probs=103.5
Q ss_pred CCCCCcccccchhhhHHHhhhhcC--CCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHH
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDL--SDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHL 219 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~--~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 219 (349)
.....++|++..++.+..++.... ......+.|+|++|+|||+||+.+++.....| .++. ... ......+
T Consensus 9 ~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~---~~~~-~~~----~~~~~~l 80 (324)
T 1hqc_A 9 KTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL---RVTS-GPA----IEKPGDL 80 (324)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCE---EEEC-TTT----CCSHHHH
T ss_pred ccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCE---EEEe-ccc----cCChHHH
Confidence 445679999999999888876420 22346788999999999999999998764322 2221 111 1111111
Q ss_pred HHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCChh--HHHHHhcccCCC------------------CCCc
Q 037291 220 QKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEVG--QLEGLIGELDQF------------------GPGS 279 (349)
Q Consensus 220 ~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~~--~~~~l~~~~~~~------------------~~gs 279 (349)
...+. .. ..++.+|+||+++... ....+...+... .+..
T Consensus 81 ----~~~l~----------------~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (324)
T 1hqc_A 81 ----AAILA----------------NS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRF 139 (324)
T ss_dssp ----HHHHT----------------TT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCC
T ss_pred ----HHHHH----------------Hh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCE
Confidence 11110 00 1245689999997543 333333222110 0234
Q ss_pred EEEEEeCChh-HHHhcCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCcccc
Q 037291 280 RIVVTTRDKG-VLEKFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNPLVL 348 (349)
Q Consensus 280 ~IIiTtR~~~-~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLal 348 (349)
++|.||.... +...+.......+++.+++.++..+++...+....... ..+..+.++++++|+|-.+
T Consensus 140 ~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~G~~r~l 207 (324)
T 1hqc_A 140 TLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRI--TEEAALEIGRRSRGTMRVA 207 (324)
T ss_dssp EEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCC--CHHHHHHHHHHSCSCHHHH
T ss_pred EEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHccCCHHHH
Confidence 6666665432 21111111235899999999999999988764332221 1356788999999998643
No 27
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.97 E-value=4e-09 Score=87.43 Aligned_cols=50 Identities=20% Similarity=0.295 Sum_probs=42.1
Q ss_pred CCCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhh
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
.....++||+.+++.+.+.+... ..+.+.|+|++|+|||+||+.+++.+.
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~~---~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 19 GKLDPVIGRDEEIRRTIQVLQRR---TKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSS---SSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHhcC---CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 44567999999999999988754 346678999999999999999998764
No 28
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.96 E-value=4.1e-10 Score=97.31 Aligned_cols=170 Identities=14% Similarity=0.110 Sum_probs=95.8
Q ss_pred CCCCCccccc---chhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHH
Q 037291 142 DSSNGLVGLN---SRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEH 218 (349)
Q Consensus 142 ~~~~~~vGr~---~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 218 (349)
....+|+|.. ..++.+..++... ..+.+.|+|++|+||||||+.+++..........|+. ...... .+.
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~-~~~~~~---~~~- 96 (242)
T 3bos_A 25 ETFTSYYPAAGNDELIGALKSAASGD---GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIP-LGIHAS---IST- 96 (242)
T ss_dssp CSTTTSCC--CCHHHHHHHHHHHHTC---SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE-GGGGGG---SCG-
T ss_pred CChhhccCCCCCHHHHHHHHHHHhCC---CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-HHHHHH---HHH-
Confidence 3446688743 3345555554432 4577889999999999999999998765433445554 211111 000
Q ss_pred HHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCChh--H--HHHHhcccCCC-CCCc-EEEEEeCChh---
Q 037291 219 LQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEVG--Q--LEGLIGELDQF-GPGS-RIVVTTRDKG--- 289 (349)
Q Consensus 219 l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~~--~--~~~l~~~~~~~-~~gs-~IIiTtR~~~--- 289 (349)
..+. .+ .++.+|||||++... . .+.+...+... ..+. ++|+||+...
T Consensus 97 ----------------------~~~~-~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~ 152 (242)
T 3bos_A 97 ----------------------ALLE-GL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEA 152 (242)
T ss_dssp ----------------------GGGT-TG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTT
T ss_pred ----------------------HHHH-hc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHH
Confidence 0000 01 345689999996432 1 23333222111 1222 4777776321
Q ss_pred ------HHHhcCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCccc
Q 037291 290 ------VLEKFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNPLV 347 (349)
Q Consensus 290 ------~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLa 347 (349)
+...+. ....+++++++.++..+++...+....... ..+..+.+++.++|++-.
T Consensus 153 ~~~~~~l~~r~~--~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~g~~r~ 212 (242)
T 3bos_A 153 GFVLPDLVSRMH--WGLTYQLQPMMDDEKLAALQRRAAMRGLQL--PEDVGRFLLNRMARDLRT 212 (242)
T ss_dssp TCCCHHHHHHHH--HSEEEECCCCCGGGHHHHHHHHHHHTTCCC--CHHHHHHHHHHTTTCHHH
T ss_pred HHhhhhhhhHhh--cCceEEeCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHccCCHHH
Confidence 222211 226899999999999999988764222111 234567888889888644
No 29
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.96 E-value=4.9e-09 Score=94.23 Aligned_cols=165 Identities=12% Similarity=-0.004 Sum_probs=99.6
Q ss_pred CcccccchhhhHHHhhhhc-CCCCeeEEEEeccCccchHHHHHHHHHhhhcCC------c-ceEEEEeccccccCCCChH
Q 037291 146 GLVGLNSRIEQIKPFLCMD-LSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEF------D-GSCFMSDVRRNSETGGGLE 217 (349)
Q Consensus 146 ~~vGr~~~~~~l~~~L~~~-~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f------~-~~~~~~~~~~~~~~~~~~~ 217 (349)
.+.||+.+++++...|... .....+.+.|+|++|+|||++++.+++.+.... . ..+++. ... ..+..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~IN-c~~----~~t~~ 95 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHID-ALE----LAGMD 95 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEE-TTC----CC--H
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEe-ccc----cCCHH
Confidence 3889999999999888653 134577889999999999999999999875332 1 123333 211 34556
Q ss_pred HHHHHHHHHhhcccccccCCCchHHHHHHh------CCCeEEEEEeCCCChhHHHHHhcccCC--C-CCCcEEEEEeCCh
Q 037291 218 HLQKEMLSTILSEKLEVAGANIPHFTKERV------WRMKVLIVLDDVNEVGQLEGLIGELDQ--F-GPGSRIVVTTRDK 288 (349)
Q Consensus 218 ~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l------~~k~~LlVlDdv~~~~~~~~l~~~~~~--~-~~gs~IIiTtR~~ 288 (349)
.+...++.++.+..... ......+.+.+ .+++++++||+++...+-+.+...+.| . .....+|.++...
T Consensus 96 ~~~~~I~~~L~g~~~~~--~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~ 173 (318)
T 3te6_A 96 ALYEKIWFAISKENLCG--DISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHN 173 (318)
T ss_dssp HHHHHHHHHHSCCC--C--CCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSS
T ss_pred HHHHHHHHHhcCCCCCc--hHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCc
Confidence 77788888886543211 11123333322 456899999999765322222222211 1 1222344444432
Q ss_pred h----HH-----HhcCCCCCcEEEcCCCCHHHHHHHHHhhh
Q 037291 289 G----VL-----EKFRGEEKKIHRVNGLEFEEAFEHFCNFA 320 (349)
Q Consensus 289 ~----~~-----~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 320 (349)
. .+ ..+ ....+.+++++.+|-.+++.+++
T Consensus 174 d~~~~~L~~~v~SR~---~~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 174 VTIREQINIMPSLKA---HFTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp CCCHHHHHTCHHHHT---TEEEEECCCCCHHHHHHHHHHHH
T ss_pred ccchhhcchhhhccC---CceEEEeCCCCHHHHHHHHHHHH
Confidence 2 11 122 12579999999999999998765
No 30
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.94 E-value=2.1e-08 Score=89.09 Aligned_cols=158 Identities=20% Similarity=0.230 Sum_probs=92.1
Q ss_pred CCCCCcccccchhhhHHHhhhhc----------CCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEecccccc
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMD----------LSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSE 211 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~----------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~ 211 (349)
.....++|.+..++.+.+.+... .-...+.+.|+|++|+|||+||+.+++.....| +..+......
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~----~~v~~~~~~~ 89 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATF----IRVVGSELVK 89 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEE----EEEEGGGGCC
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE----EEEehHHHHH
Confidence 34567999999999998877531 012356688999999999999999998764322 1111211111
Q ss_pred CCCC-hHHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCCh----------------hHHHHHhcccCC
Q 037291 212 TGGG-LEHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEV----------------GQLEGLIGELDQ 274 (349)
Q Consensus 212 ~~~~-~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~----------------~~~~~l~~~~~~ 274 (349)
...+ ...... ..+.......+.+|+||+++.. ..+..++..+..
T Consensus 90 ~~~~~~~~~~~-------------------~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~ 150 (285)
T 3h4m_A 90 KFIGEGASLVK-------------------DIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDG 150 (285)
T ss_dssp CSTTHHHHHHH-------------------HHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHT
T ss_pred hccchHHHHHH-------------------HHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhC
Confidence 0111 011111 1222222345689999999643 122333333221
Q ss_pred --CCCCcEEEEEeCChhHHHh--cC-CCCCcEEEcCCCCHHHHHHHHHhhhcC
Q 037291 275 --FGPGSRIVVTTRDKGVLEK--FR-GEEKKIHRVNGLEFEEAFEHFCNFAFK 322 (349)
Q Consensus 275 --~~~gs~IIiTtR~~~~~~~--~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~ 322 (349)
...+..||.||.....+.. .. ......+.+++++.++..+++..++..
T Consensus 151 ~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~ 203 (285)
T 3h4m_A 151 FDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRK 203 (285)
T ss_dssp TCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTT
T ss_pred CCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhc
Confidence 1345677888875533221 01 013357999999999999999887643
No 31
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.94 E-value=5e-08 Score=85.42 Aligned_cols=180 Identities=19% Similarity=0.218 Sum_probs=97.5
Q ss_pred CCCCcccccchhhhHHHhhhhcC---------CCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCC
Q 037291 143 SSNGLVGLNSRIEQIKPFLCMDL---------SDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETG 213 (349)
Q Consensus 143 ~~~~~vGr~~~~~~l~~~L~~~~---------~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 213 (349)
....++|.+..++.+.+++..-. ....+.+.|+|++|+|||+||+.+++.....| +.+. ........
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~~~-~~~~~~~~ 79 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPF---LAMA-GAEFVEVI 79 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCE---EEEE-TTTTSSSS
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCE---EEec-hHHHHhhc
Confidence 34568888888777766553210 02345678999999999999999999764322 2222 21111101
Q ss_pred CChHHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCCh-----------------hHHHHHhcccCCC-
Q 037291 214 GGLEHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEV-----------------GQLEGLIGELDQF- 275 (349)
Q Consensus 214 ~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~-----------------~~~~~l~~~~~~~- 275 (349)
.+. .... +...+.......+.+|+||+++.. ..+..++..+...
T Consensus 80 ~~~---~~~~---------------~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 141 (262)
T 2qz4_A 80 GGL---GAAR---------------VRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMG 141 (262)
T ss_dssp TTH---HHHH---------------HHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCC
T ss_pred cCh---hHHH---------------HHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcC
Confidence 110 0000 111222222345789999999754 1233343333322
Q ss_pred -CCCcEEEEEeCChhHHHh-cCC--CCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCc
Q 037291 276 -GPGSRIVVTTRDKGVLEK-FRG--EEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNP 345 (349)
Q Consensus 276 -~~gs~IIiTtR~~~~~~~-~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~P 345 (349)
..+..+|.||.....+.. +.. .....+.++.++.++..+++..++...... .........+++.+.|.+
T Consensus 142 ~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~~~~~~~l~~~~~g~~ 214 (262)
T 2qz4_A 142 TTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLT-QSSTFYSQRLAELTPGFS 214 (262)
T ss_dssp TTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCC-BTHHHHHHHHHHTCTTCC
T ss_pred CCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCC-cchhhHHHHHHHHCCCCC
Confidence 235567777765543221 110 134678899999999999998776332221 111223466777777764
No 32
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.93 E-value=5.4e-09 Score=95.76 Aligned_cols=192 Identities=13% Similarity=0.173 Sum_probs=109.8
Q ss_pred CCCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhc--CCcceEEEEeccccccCCCChHHH
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTG--EFDGSCFMSDVRRNSETGGGLEHL 219 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~--~f~~~~~~~~~~~~~~~~~~~~~l 219 (349)
.....++|++..++.+..++... ..+.+.|+|++|+||||+|+.+++.+.. .+...+.-.+. +. ..+...
T Consensus 34 ~~~~~i~g~~~~~~~l~~~l~~~---~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~---~~-~~~~~~- 105 (353)
T 1sxj_D 34 KNLDEVTAQDHAVTVLKKTLKSA---NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNA---SD-ERGISI- 105 (353)
T ss_dssp SSTTTCCSCCTTHHHHHHHTTCT---TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECS---SS-CCCHHH-
T ss_pred CCHHHhhCCHHHHHHHHHHHhcC---CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcc---cc-ccchHH-
Confidence 44577999999999999988754 2233889999999999999999987532 12211221111 11 122222
Q ss_pred HHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCCh--hHHHHHhcccCCCCCCcEEEEEeCChh-HHHhcCC
Q 037291 220 QKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEV--GQLEGLIGELDQFGPGSRIVVTTRDKG-VLEKFRG 296 (349)
Q Consensus 220 ~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTtR~~~-~~~~~~~ 296 (349)
..+.+......... .............++-+|++|+++.. ...+.+...+.......++|++|.... +...+..
T Consensus 106 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~s 182 (353)
T 1sxj_D 106 VREKVKNFARLTVS---KPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLAS 182 (353)
T ss_dssp HTTHHHHHHHSCCC---CCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHH
T ss_pred HHHHHHHHhhhccc---ccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhc
Confidence 22222221111000 00000111111245679999999643 334455544444345667777775443 2111110
Q ss_pred CCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCccc
Q 037291 297 EEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNPLV 347 (349)
Q Consensus 297 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLa 347 (349)
....+++.+++.++..+.+...+....... ..+..+.|++.++|.|-.
T Consensus 183 -R~~~i~~~~~~~~~~~~~l~~~~~~~~~~i--~~~~l~~l~~~~~G~~r~ 230 (353)
T 1sxj_D 183 -QCSKFRFKALDASNAIDRLRFISEQENVKC--DDGVLERILDISAGDLRR 230 (353)
T ss_dssp -HSEEEECCCCCHHHHHHHHHHHHHTTTCCC--CHHHHHHHHHHTSSCHHH
T ss_pred -cCceEEeCCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHcCCCHHH
Confidence 234789999999999999988764332211 135678899999998754
No 33
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.91 E-value=4.2e-09 Score=99.65 Aligned_cols=154 Identities=16% Similarity=0.192 Sum_probs=91.3
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhhcCCcc--eEEEEeccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHHH
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFTGEFDG--SCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKER 246 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~ 246 (349)
...+.|+|++|+||||||+.+++.+...+.. .+++. ...+...+...+... . ...+.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~-----------~~~~~~~~~~~~~~~-------~-~~~~~~~ 190 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT-----------SEKFLNDLVDSMKEG-------K-LNEFREK 190 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE-----------HHHHHHHHHHHHHTT-------C-HHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee-----------HHHHHHHHHHHHHcc-------c-HHHHHHH
Confidence 6778899999999999999999987555422 23333 112333333333221 1 1334444
Q ss_pred hCCCeEEEEEeCCCChh----HHHHHhcccCC-CCCCcEEEEEeCCh---------hHHHhcCCCCCcEEEcCCCCHHHH
Q 037291 247 VWRMKVLIVLDDVNEVG----QLEGLIGELDQ-FGPGSRIVVTTRDK---------GVLEKFRGEEKKIHRVNGLEFEEA 312 (349)
Q Consensus 247 l~~k~~LlVlDdv~~~~----~~~~l~~~~~~-~~~gs~IIiTtR~~---------~~~~~~~~~~~~~~~l~~L~~~ea 312 (349)
+..++-+|+|||++... ..+.+...+.. ...|..||+||.+. .+...+. ....+.+++++.++.
T Consensus 191 ~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~--~g~~i~l~~p~~e~r 268 (440)
T 2z4s_A 191 YRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQ--MGLVAKLEPPDEETR 268 (440)
T ss_dssp HTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHH--SSBCCBCCCCCHHHH
T ss_pred hcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhcc--CCeEEEeCCCCHHHH
Confidence 44467799999995332 22333333221 13567888888762 2233232 335789999999999
Q ss_pred HHHHHhhhcCCC-CCCchHHHHHHHHHHHhcCCcc
Q 037291 313 FEHFCNFAFKEN-HCPTNLNWHSRRVVEYAKGNPL 346 (349)
Q Consensus 313 ~~Lf~~~a~~~~-~~~~~~~~~~~~i~~~~~G~PL 346 (349)
.+++...+-..+ ..++ +....|++.++|++-
T Consensus 269 ~~iL~~~~~~~~~~i~~---e~l~~la~~~~gn~R 300 (440)
T 2z4s_A 269 KSIARKMLEIEHGELPE---EVLNFVAENVDDNLR 300 (440)
T ss_dssp HHHHHHHHHHHTCCCCT---THHHHHHHHCCSCHH
T ss_pred HHHHHHHHHHcCCCCCH---HHHHHHHHhcCCCHH
Confidence 999987763211 1122 235667777777653
No 34
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.91 E-value=6.5e-08 Score=88.96 Aligned_cols=196 Identities=15% Similarity=0.166 Sum_probs=108.5
Q ss_pred hHHHHHHHHHhhhhcccccccccCCCCCcccccchhhhHHHhhhhc---------CCCCeeEEEEeccCccchHHHHHHH
Q 037291 119 DAELVNKIVEDVLKNLEKITVATDSSNGLVGLNSRIEQIKPFLCMD---------LSDTVQIVGIWGMGGIGKTTLAEAI 189 (349)
Q Consensus 119 e~~~i~~iv~~v~~~l~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~---------~~~~~~~i~I~G~~GiGKTtLa~~~ 189 (349)
+...++.+...+...... .....++|.+..++.+.+.+... .....+.+.|+|++|+|||+||+.+
T Consensus 63 ~~~~~~~i~~~i~~~~~~-----~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~ai 137 (357)
T 3d8b_A 63 EPKMIELIMNEIMDHGPP-----VNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCI 137 (357)
T ss_dssp CHHHHHHHHHHTBCCSCC-----CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHH
T ss_pred ChHHHHHHHhhcccCCCC-----CCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHH
Confidence 455666666655544322 33457999999999998877531 0123567889999999999999999
Q ss_pred HHhhhcCCcceEEEEeccccccCCCCh-HHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCCh------
Q 037291 190 FDQFTGEFDGSCFMSDVRRNSETGGGL-EHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEV------ 262 (349)
Q Consensus 190 ~~~~~~~f~~~~~~~~~~~~~~~~~~~-~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~------ 262 (349)
++..... ++..+.........+- ..... ..+......++.+|+||+++..
T Consensus 138 a~~~~~~----~~~i~~~~l~~~~~g~~~~~~~-------------------~~~~~a~~~~~~vl~iDEid~l~~~~~~ 194 (357)
T 3d8b_A 138 ASQSGAT----FFSISASSLTSKWVGEGEKMVR-------------------ALFAVARCQQPAVIFIDEIDSLLSQRGD 194 (357)
T ss_dssp HHHTTCE----EEEEEGGGGCCSSTTHHHHHHH-------------------HHHHHHHHTCSEEEEEETHHHHTBC---
T ss_pred HHHcCCe----EEEEehHHhhccccchHHHHHH-------------------HHHHHHHhcCCeEEEEeCchhhhccCCC
Confidence 9876322 2222222222101110 11111 1111122345789999999532
Q ss_pred -------hHHHHHhcccCC----CCCCcEEEEEeCChhHH-HhcCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchH
Q 037291 263 -------GQLEGLIGELDQ----FGPGSRIVVTTRDKGVL-EKFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNL 330 (349)
Q Consensus 263 -------~~~~~l~~~~~~----~~~gs~IIiTtR~~~~~-~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~ 330 (349)
..+..++..+.. ...+..||.||.....+ ..+.......+.+...+.++..+++...+-.......
T Consensus 195 ~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~-- 272 (357)
T 3d8b_A 195 GEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLS-- 272 (357)
T ss_dssp ---CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCC--
T ss_pred CcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCcc--
Confidence 112233333221 12345666677654321 1111113457889999999999988776633221111
Q ss_pred HHHHHHHHHHhcCC
Q 037291 331 NWHSRRVVEYAKGN 344 (349)
Q Consensus 331 ~~~~~~i~~~~~G~ 344 (349)
.+..+.+++.+.|.
T Consensus 273 ~~~l~~la~~t~G~ 286 (357)
T 3d8b_A 273 EEEIEQIVQQSDAF 286 (357)
T ss_dssp HHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHcCCC
Confidence 23466777777774
No 35
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.86 E-value=2.7e-08 Score=94.06 Aligned_cols=173 Identities=16% Similarity=0.277 Sum_probs=101.8
Q ss_pred CCCCCcccccchh---hhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHH
Q 037291 142 DSSNGLVGLNSRI---EQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEH 218 (349)
Q Consensus 142 ~~~~~~vGr~~~~---~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 218 (349)
.....++|.+..+ ..+...+... ..+.+.|+|++|+||||||+.+++.....|. .+. ....+...
T Consensus 23 ~~l~~ivGq~~~~~~~~~L~~~i~~~---~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~---~l~------a~~~~~~~ 90 (447)
T 3pvs_A 23 ENLAQYIGQQHLLAAGKPLPRAIEAG---HLHSMILWGPPGTGKTTLAEVIARYANADVE---RIS------AVTSGVKE 90 (447)
T ss_dssp CSTTTCCSCHHHHSTTSHHHHHHHHT---CCCEEEEECSTTSSHHHHHHHHHHHTTCEEE---EEE------TTTCCHHH
T ss_pred CCHHHhCCcHHHHhchHHHHHHHHcC---CCcEEEEECCCCCcHHHHHHHHHHHhCCCeE---EEE------eccCCHHH
Confidence 4457799999888 6777777665 4577889999999999999999987643321 111 11223333
Q ss_pred HHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCCh--hHHHHHhcccCCCCCCcEEE-EEeCChh--HH-H
Q 037291 219 LQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEV--GQLEGLIGELDQFGPGSRIV-VTTRDKG--VL-E 292 (349)
Q Consensus 219 l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~II-iTtR~~~--~~-~ 292 (349)
+ ..++... ......+++.+|+||+++.. .+.+.++..+.. + ...+| .||.+.. +. .
T Consensus 91 i-r~~~~~a---------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~-~-~v~lI~att~n~~~~l~~a 152 (447)
T 3pvs_A 91 I-REAIERA---------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED-G-TITFIGATTENPSFELNSA 152 (447)
T ss_dssp H-HHHHHHH---------------HHHHHTTCCEEEEEETTTCC------CCHHHHHT-T-SCEEEEEESSCGGGSSCHH
T ss_pred H-HHHHHHH---------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc-C-ceEEEecCCCCcccccCHH
Confidence 2 2222111 11112456889999999754 344455554442 2 23344 3555442 11 1
Q ss_pred hcCCCCCcEEEcCCCCHHHHHHHHHhhhcCCC-----CCCchHHHHHHHHHHHhcCCcc
Q 037291 293 KFRGEEKKIHRVNGLEFEEAFEHFCNFAFKEN-----HCPTNLNWHSRRVVEYAKGNPL 346 (349)
Q Consensus 293 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~-----~~~~~~~~~~~~i~~~~~G~PL 346 (349)
... ...++.+.+++.++..+++.+.+-... ....-..+..+.+++.++|.+-
T Consensus 153 L~s--R~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R 209 (447)
T 3pvs_A 153 LLS--RARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDAR 209 (447)
T ss_dssp HHT--TEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHH
T ss_pred HhC--ceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHH
Confidence 112 345889999999999999987763311 1111223556778888888753
No 36
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.85 E-value=1.2e-08 Score=93.49 Aligned_cols=193 Identities=13% Similarity=0.159 Sum_probs=103.6
Q ss_pred CCCCCcccccchhhhHHHhh-hhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEe---------------
Q 037291 142 DSSNGLVGLNSRIEQIKPFL-CMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSD--------------- 205 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L-~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~--------------- 205 (349)
.....++|.+..++.+..++ ... ..+.+.|+|++|+||||+|+.++..+...-...+++..
T Consensus 11 ~~~~~~vg~~~~~~~l~~~~~~~~---~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1sxj_E 11 KSLNALSHNEELTNFLKSLSDQPR---DLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNV 87 (354)
T ss_dssp CSGGGCCSCHHHHHHHHTTTTCTT---CCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CC
T ss_pred CCHHHhcCCHHHHHHHHHHHhhCC---CCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeee
Confidence 34467899999999998888 443 22238899999999999999999864222111111110
Q ss_pred --------ccccccCCCChHHHHHHHHHHhhcccccccCCCchHHH-HHHhCCCeEEEEEeCCCCh--hHHHHHhcccCC
Q 037291 206 --------VRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFT-KERVWRMKVLIVLDDVNEV--GQLEGLIGELDQ 274 (349)
Q Consensus 206 --------~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~-~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~ 274 (349)
+. .+..........+.++..+..... +...+ ...+..++-++|||+++.. ...+.+...+..
T Consensus 88 ~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~ 160 (354)
T 1sxj_E 88 VSSPYHLEIT-PSDMGNNDRIVIQELLKEVAQMEQ------VDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEK 160 (354)
T ss_dssp EECSSEEEEC-CC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHHH
T ss_pred ecccceEEec-HhhcCCcchHHHHHHHHHHHHhcc------ccccccccccCCCCeEEEEeCccccCHHHHHHHHHHHHh
Confidence 00 000000000011222222111000 00000 0002336779999999754 234445554444
Q ss_pred CCCCcEEEEEeCChh-HHHhcCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCcc
Q 037291 275 FGPGSRIVVTTRDKG-VLEKFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNPL 346 (349)
Q Consensus 275 ~~~gs~IIiTtR~~~-~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL 346 (349)
...+..+|++|.+.. +...+.. ....+++.+++.++..+++...+-..+...+. .+.+..|++.++|.+-
T Consensus 161 ~~~~~~~Il~t~~~~~l~~~l~s-R~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~l~~i~~~~~G~~r 231 (354)
T 1sxj_E 161 YSKNIRLIMVCDSMSPIIAPIKS-QCLLIRCPAPSDSEISTILSDVVTNERIQLET-KDILKRIAQASNGNLR 231 (354)
T ss_dssp STTTEEEEEEESCSCSSCHHHHT-TSEEEECCCCCHHHHHHHHHHHHHHHTCEECC-SHHHHHHHHHHTTCHH
T ss_pred hcCCCEEEEEeCCHHHHHHHHHh-hceEEecCCcCHHHHHHHHHHHHHHcCCCCCc-HHHHHHHHHHcCCCHH
Confidence 445677888776542 2222211 34789999999999999998776332211110 1456788899999864
No 37
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.84 E-value=1.7e-07 Score=82.67 Aligned_cols=174 Identities=18% Similarity=0.151 Sum_probs=94.7
Q ss_pred CCCcccccchhhhHHH-------hhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCCh
Q 037291 144 SNGLVGLNSRIEQIKP-------FLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGL 216 (349)
Q Consensus 144 ~~~~vGr~~~~~~l~~-------~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 216 (349)
...++|....++.+.. .+..........+.|+|++|+|||+||+.+++.....| +.+....... ....
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~---~~i~~~~~~~--g~~~ 106 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPF---IKICSPDKMI--GFSE 106 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSE---EEEECGGGCT--TCCH
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCE---EEEeCHHHhc--CCch
Confidence 3457787777666554 23222134567889999999999999999999753221 1121110000 0000
Q ss_pred HHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCCh------------hHHHHHhcccCC---CCCCcEE
Q 037291 217 EHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEV------------GQLEGLIGELDQ---FGPGSRI 281 (349)
Q Consensus 217 ~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~------------~~~~~l~~~~~~---~~~gs~I 281 (349)
..... .+...+......++.+|+||+++.. ..++.+...+.. .+....|
T Consensus 107 ~~~~~----------------~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~i 170 (272)
T 1d2n_A 107 TAKCQ----------------AMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLI 170 (272)
T ss_dssp HHHHH----------------HHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred HHHHH----------------HHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEE
Confidence 00000 0112222333456889999998543 122333333332 2334467
Q ss_pred EEEeCChhHHHhc--CCCCCcEEEcCCCCH-HHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCc
Q 037291 282 VVTTRDKGVLEKF--RGEEKKIHRVNGLEF-EEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNP 345 (349)
Q Consensus 282 IiTtR~~~~~~~~--~~~~~~~~~l~~L~~-~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~P 345 (349)
|.||.....+..+ .......+++++++. ++..+++.... . .+ .+....+++.+.|.+
T Consensus 171 i~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~---~-~~---~~~~~~l~~~~~g~~ 230 (272)
T 1d2n_A 171 IGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG---N-FK---DKERTTIAQQVKGKK 230 (272)
T ss_dssp EEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT---C-SC---HHHHHHHHHHHTTSE
T ss_pred EEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC---C-CC---HHHHHHHHHHhcCCC
Confidence 7788877655542 212356789999988 66666655431 1 11 234677888888754
No 38
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.83 E-value=7.3e-08 Score=88.81 Aligned_cols=192 Identities=12% Similarity=0.020 Sum_probs=103.3
Q ss_pred CCCcccccchhhhHHHhh---hhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHH
Q 037291 144 SNGLVGLNSRIEQIKPFL---CMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQ 220 (349)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L---~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 220 (349)
...|+|++..++.+..++ ... ....+.+.|+|++|+|||+||+.+++.+...... +.+. .........+.....
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~-~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~-~~~~-~~~~~~~~~~~~~~~ 119 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREG-KIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPF-TAIA-GSEIFSLEMSKTEAL 119 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTT-CCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCE-EEEE-GGGGSCSSSCHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcC-CCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCc-cccc-chhhhhcccchhHHH
Confidence 567999999877754444 333 2223688899999999999999999987643221 1121 111111133333444
Q ss_pred HHHHHHhhcccc--------------------c------cc-CCCchHHHHHH---------hCCC----eEEEEEeCCC
Q 037291 221 KEMLSTILSEKL--------------------E------VA-GANIPHFTKER---------VWRM----KVLIVLDDVN 260 (349)
Q Consensus 221 ~~ll~~~~~~~~--------------------~------~~-~~~~~~~~~~~---------l~~k----~~LlVlDdv~ 260 (349)
.+.+........ . .. .......+++. ..++ +.+|+||+++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~ 199 (368)
T 3uk6_A 120 TQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVH 199 (368)
T ss_dssp HHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGG
T ss_pred HHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcc
Confidence 443333211100 0 00 00001111111 1122 3599999997
Q ss_pred Ch--hHHHHHhcccCCCCCCcEEEEEeCC-----------------hhHHHhcCCCCCcEEEcCCCCHHHHHHHHHhhhc
Q 037291 261 EV--GQLEGLIGELDQFGPGSRIVVTTRD-----------------KGVLEKFRGEEKKIHRVNGLEFEEAFEHFCNFAF 321 (349)
Q Consensus 261 ~~--~~~~~l~~~~~~~~~gs~IIiTtR~-----------------~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 321 (349)
.. ...+.+...+...... .++++|.. +.+.. ....+.+++++.++..+++...+-
T Consensus 200 ~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s-----R~~~i~~~~~~~~e~~~il~~~~~ 273 (368)
T 3uk6_A 200 MLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLD-----RLLIVSTTPYSEKDTKQILRIRCE 273 (368)
T ss_dssp GSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHT-----TEEEEEECCCCHHHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHh-----hccEEEecCCCHHHHHHHHHHHHH
Confidence 54 3445555554433333 34444431 12222 234589999999999999987764
Q ss_pred CCCCCCchHHHHHHHHHHHhc-CCcc
Q 037291 322 KENHCPTNLNWHSRRVVEYAK-GNPL 346 (349)
Q Consensus 322 ~~~~~~~~~~~~~~~i~~~~~-G~PL 346 (349)
..... -..+..+.+++.+. |.|-
T Consensus 274 ~~~~~--~~~~~l~~l~~~~~~G~~r 297 (368)
T 3uk6_A 274 EEDVE--MSEDAYTVLTRIGLETSLR 297 (368)
T ss_dssp HTTCC--BCHHHHHHHHHHHHHSCHH
T ss_pred HcCCC--CCHHHHHHHHHHhcCCCHH
Confidence 32221 12345677888887 7764
No 39
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.83 E-value=2.7e-08 Score=96.02 Aligned_cols=186 Identities=14% Similarity=0.185 Sum_probs=102.0
Q ss_pred CCCCCcccccchhhhHHHhhhhcC--------------CCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEecc
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDL--------------SDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVR 207 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~--------------~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~ 207 (349)
.....++|++..++.+..++.... ....+.+.|+|++|+||||||+.+++... +. .+.+. .
T Consensus 36 ~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~--~~-~i~in-~- 110 (516)
T 1sxj_A 36 TNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG--YD-ILEQN-A- 110 (516)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT--CE-EEEEC-T-
T ss_pred CCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC--CC-EEEEe-C-
Confidence 345679999999999999987510 01347889999999999999999999872 21 12221 1
Q ss_pred ccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHH--HhCCCeEEEEEeCCCChh-----HHHHHhcccCCCCCCcE
Q 037291 208 RNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKE--RVWRMKVLIVLDDVNEVG-----QLEGLIGELDQFGPGSR 280 (349)
Q Consensus 208 ~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~--~l~~k~~LlVlDdv~~~~-----~~~~l~~~~~~~~~gs~ 280 (349)
+. ... ..+....+........ -........+ ....++.+||||+++... .+..+...+.. .+..
T Consensus 111 --s~-~~~-~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~ 181 (516)
T 1sxj_A 111 --SD-VRS-KTLLNAGVKNALDNMS---VVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTP 181 (516)
T ss_dssp --TS-CCC-HHHHHHTGGGGTTBCC---STTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSC
T ss_pred --CC-cch-HHHHHHHHHHHhcccc---HHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCC
Confidence 11 111 1222221111111000 0000000000 123568899999996431 12333333221 2334
Q ss_pred EEEEeCChh--HHHhcCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCC-CCchHHHHHHHHHHHhcCCc
Q 037291 281 IVVTTRDKG--VLEKFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENH-CPTNLNWHSRRVVEYAKGNP 345 (349)
Q Consensus 281 IIiTtR~~~--~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~~i~~~~~G~P 345 (349)
||+++.+.. .+..+.. ....+++++++.++..+++...+..... .++ +....|++.++|.+
T Consensus 182 iIli~~~~~~~~l~~l~~-r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~---~~l~~la~~s~Gdi 245 (516)
T 1sxj_A 182 LILICNERNLPKMRPFDR-VCLDIQFRRPDANSIKSRLMTIAIREKFKLDP---NVIDRLIQTTRGDI 245 (516)
T ss_dssp EEEEESCTTSSTTGGGTT-TSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHTTTCH
T ss_pred EEEEEcCCCCccchhhHh-ceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCcH
Confidence 555554322 1122221 4568999999999999988776643221 122 24677888888864
No 40
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.82 E-value=4.1e-08 Score=88.97 Aligned_cols=176 Identities=15% Similarity=0.132 Sum_probs=94.9
Q ss_pred CCCCcc-cccch--hhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHH
Q 037291 143 SSNGLV-GLNSR--IEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHL 219 (349)
Q Consensus 143 ~~~~~v-Gr~~~--~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 219 (349)
..++|+ |.... ...+..++... ......+.|+|++|+||||||+.+++.....-...+++. . ..+
T Consensus 9 ~f~~fv~g~~~~~a~~~~~~~~~~~-~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~----~-------~~~ 76 (324)
T 1l8q_A 9 TLENFIVGEGNRLAYEVVKEALENL-GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS----A-------DDF 76 (324)
T ss_dssp CSSSCCCCTTTHHHHHHHHHHHHTT-TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE----H-------HHH
T ss_pred CcccCCCCCcHHHHHHHHHHHHhCc-CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE----H-------HHH
Confidence 345565 54332 23344444433 224567889999999999999999997754322233443 1 122
Q ss_pred HHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCChh----HHHHHhcccCC-CCCCcEEEEEeCCh------
Q 037291 220 QKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEVG----QLEGLIGELDQ-FGPGSRIVVTTRDK------ 288 (349)
Q Consensus 220 ~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~~----~~~~l~~~~~~-~~~gs~IIiTtR~~------ 288 (349)
...+...+... .. ..+...+. +..+|+|||++... ..+.+...+.. ...+..||+||.+.
T Consensus 77 ~~~~~~~~~~~-------~~-~~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~ 147 (324)
T 1l8q_A 77 AQAMVEHLKKG-------TI-NEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDG 147 (324)
T ss_dssp HHHHHHHHHHT-------CH-HHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTT
T ss_pred HHHHHHHHHcC-------cH-HHHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHH
Confidence 33333322211 11 22222222 36699999996432 22233322221 13456788877533
Q ss_pred ---hHHHhcCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCc
Q 037291 289 ---GVLEKFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNP 345 (349)
Q Consensus 289 ---~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~P 345 (349)
.+...+. ....+++++ +.++..+++...+...+...+ .+..+.+++++ |++
T Consensus 148 l~~~L~sR~~--~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~--~~~l~~l~~~~-g~~ 201 (324)
T 1l8q_A 148 VSDRLVSRFE--GGILVEIEL-DNKTRFKIIKEKLKEFNLELR--KEVIDYLLENT-KNV 201 (324)
T ss_dssp SCHHHHHHHH--TSEEEECCC-CHHHHHHHHHHHHHHTTCCCC--HHHHHHHHHHC-SSH
T ss_pred hhhHhhhccc--CceEEEeCC-CHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHhC-CCH
Confidence 1222222 336799999 999999999887643222111 24466677777 654
No 41
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.82 E-value=1.2e-07 Score=85.82 Aligned_cols=174 Identities=14% Similarity=0.116 Sum_probs=98.8
Q ss_pred CCCCcccccchhhhHHHhhhh---------cCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCC
Q 037291 143 SSNGLVGLNSRIEQIKPFLCM---------DLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETG 213 (349)
Q Consensus 143 ~~~~~vGr~~~~~~l~~~L~~---------~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 213 (349)
.-..++|.+..++.|.+.+.. ......+.+.|+|++|+|||+||+.+++.....| +..+....
T Consensus 16 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~----~~v~~~~l---- 87 (322)
T 3eie_A 16 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF----FSVSSSDL---- 87 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEE----EEEEHHHH----
T ss_pred CHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCE----EEEchHHH----
Confidence 345689999988888877731 1012346788999999999999999998764322 11111111
Q ss_pred CChHHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCChh-------------HHHHHhcccC---CCCC
Q 037291 214 GGLEHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEVG-------------QLEGLIGELD---QFGP 277 (349)
Q Consensus 214 ~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~~-------------~~~~l~~~~~---~~~~ 277 (349)
.....+.. ...+...+......++.+|+||+++... ....++..+. ....
T Consensus 88 ----------~~~~~g~~----~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 153 (322)
T 3eie_A 88 ----------VSKWMGES----EKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 153 (322)
T ss_dssp ----------HTTTGGGH----HHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCC
T ss_pred ----------hhcccchH----HHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCC
Confidence 11000000 0001111222223467899999996431 1233333322 2234
Q ss_pred CcEEEEEeCChhH-----HHhcCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCC
Q 037291 278 GSRIVVTTRDKGV-----LEKFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGN 344 (349)
Q Consensus 278 gs~IIiTtR~~~~-----~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~ 344 (349)
+..||.||..... ... ....+.++..+.++-.+++..++........ ......+++.+.|.
T Consensus 154 ~v~vi~atn~~~~ld~al~~R----f~~~i~~~~p~~~~r~~il~~~~~~~~~~~~--~~~l~~la~~t~g~ 219 (322)
T 3eie_A 154 GVLVLGATNIPWQLDSAIRRR----FERRIYIPLPDLAARTTMFEINVGDTPCVLT--KEDYRTLGAMTEGY 219 (322)
T ss_dssp CEEEEEEESCGGGSCHHHHHH----CCEEEECCCCCHHHHHHHHHHHHTTCCCCCC--HHHHHHHHHTTTTC
T ss_pred ceEEEEecCChhhCCHHHHcc----cCeEEEeCCCCHHHHHHHHHHHhccCCCCCC--HHHHHHHHHHcCCC
Confidence 5667767765432 222 3467889999999999999887744322211 23456677777764
No 42
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.80 E-value=2.5e-07 Score=82.64 Aligned_cols=176 Identities=15% Similarity=0.132 Sum_probs=98.5
Q ss_pred CCCCCcccccchhhhHHHhhhhc---------CCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccC
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMD---------LSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSET 212 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~---------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 212 (349)
.....++|.+..++.+.+.+... .....+.+.|+|++|+|||+||+.+++.....| +..+.......
T Consensus 18 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~----~~i~~~~l~~~ 93 (297)
T 3b9p_A 18 VEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATF----LNISAASLTSK 93 (297)
T ss_dssp CCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEE----EEEESTTTSSS
T ss_pred CCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe----EEeeHHHHhhc
Confidence 34467999999999988877431 012346788999999999999999998764222 11212111110
Q ss_pred CC-ChHHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCChh-------------HHHHHhcccCCC---
Q 037291 213 GG-GLEHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEVG-------------QLEGLIGELDQF--- 275 (349)
Q Consensus 213 ~~-~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~~-------------~~~~l~~~~~~~--- 275 (349)
.. ........+ +.......+.+|+||+++... ....++..+...
T Consensus 94 ~~~~~~~~~~~~-------------------~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 154 (297)
T 3b9p_A 94 YVGDGEKLVRAL-------------------FAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGN 154 (297)
T ss_dssp SCSCHHHHHHHH-------------------HHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC--
T ss_pred ccchHHHHHHHH-------------------HHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhccccc
Confidence 11 111111111 111223457899999995431 112222222111
Q ss_pred --CCCcEEEEEeCChh-----HHHhcCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCcc
Q 037291 276 --GPGSRIVVTTRDKG-----VLEKFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNPL 346 (349)
Q Consensus 276 --~~gs~IIiTtR~~~-----~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL 346 (349)
+.+..||.||.... +... ....+.++..+.++..+++...+-....... .+....+++.+.|.+-
T Consensus 155 ~~~~~v~vi~~tn~~~~l~~~l~~R----~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~--~~~~~~la~~~~g~~~ 226 (297)
T 3b9p_A 155 PDGDRIVVLAATNRPQELDEAALRR----FTKRVYVSLPDEQTRELLLNRLLQKQGSPLD--TEALRRLAKITDGYSG 226 (297)
T ss_dssp ----CEEEEEEESCGGGBCHHHHHH----CCEEEECCCCCHHHHHHHHHHHHGGGSCCSC--HHHHHHHHHHTTTCCH
T ss_pred CCCCcEEEEeecCChhhCCHHHHhh----CCeEEEeCCcCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHcCCCCH
Confidence 23456777777543 2232 2357888888888888888776533222111 2346778888888763
No 43
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.78 E-value=5.7e-08 Score=88.02 Aligned_cols=176 Identities=14% Similarity=0.152 Sum_probs=102.3
Q ss_pred CCCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHH
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQK 221 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 221 (349)
.....++|.+..++.+..++... .....+.++|++|+|||++|+.+++.+... ...+. .+ ..+... ..
T Consensus 23 ~~~~~ivg~~~~~~~l~~~l~~~--~~~~~~L~~G~~G~GKT~la~~la~~l~~~---~~~i~----~~--~~~~~~-i~ 90 (324)
T 3u61_B 23 STIDECILPAFDKETFKSITSKG--KIPHIILHSPSPGTGKTTVAKALCHDVNAD---MMFVN----GS--DCKIDF-VR 90 (324)
T ss_dssp CSTTTSCCCHHHHHHHHHHHHTT--CCCSEEEECSSTTSSHHHHHHHHHHHTTEE---EEEEE----TT--TCCHHH-HH
T ss_pred CCHHHHhCcHHHHHHHHHHHHcC--CCCeEEEeeCcCCCCHHHHHHHHHHHhCCC---EEEEc----cc--ccCHHH-HH
Confidence 44578999999999999998854 234677888999999999999999876321 22222 11 222222 22
Q ss_pred HHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCChh---HHHHHhcccCCCCCCcEEEEEeCChhH-HHhcCCC
Q 037291 222 EMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEVG---QLEGLIGELDQFGPGSRIVVTTRDKGV-LEKFRGE 297 (349)
Q Consensus 222 ~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~~---~~~~l~~~~~~~~~gs~IIiTtR~~~~-~~~~~~~ 297 (349)
..+....... ...+++-+++|||++... ..+.+...+.....+.++|+||....- ...+..
T Consensus 91 ~~~~~~~~~~--------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~s- 155 (324)
T 3u61_B 91 GPLTNFASAA--------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQS- 155 (324)
T ss_dssp THHHHHHHBC--------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHH-
T ss_pred HHHHHHHhhc--------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHh-
Confidence 2222211100 012367899999998654 344454444433456688888876531 111000
Q ss_pred CCcEEEcCCCCHHHHHHH-------HHhhhcCCC-CCCchHHHHHHHHHHHhcCCcc
Q 037291 298 EKKIHRVNGLEFEEAFEH-------FCNFAFKEN-HCPTNLNWHSRRVVEYAKGNPL 346 (349)
Q Consensus 298 ~~~~~~l~~L~~~ea~~L-------f~~~a~~~~-~~~~~~~~~~~~i~~~~~G~PL 346 (349)
....+++++++.++-.++ +...+.... ..++ .+....+++.++|.+-
T Consensus 156 R~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~--~~~~~~l~~~~~gd~R 210 (324)
T 3u61_B 156 RCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD--MKVVAALVKKNFPDFR 210 (324)
T ss_dssp HSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC--HHHHHHHHHHTCSCTT
T ss_pred hCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc--HHHHHHHHHhCCCCHH
Confidence 225799999998874333 222221111 1111 1456778888888764
No 44
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.77 E-value=8.3e-08 Score=86.22 Aligned_cols=151 Identities=14% Similarity=0.062 Sum_probs=87.4
Q ss_pred CcccccchhhhHHHhhhhc------------CCCCeeEEEEeccCccchHHHHHHHHHhhhcCCc--c-eEEEEeccccc
Q 037291 146 GLVGLNSRIEQIKPFLCMD------------LSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFD--G-SCFMSDVRRNS 210 (349)
Q Consensus 146 ~~vGr~~~~~~l~~~L~~~------------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~--~-~~~~~~~~~~~ 210 (349)
.++|.+..++.+.+++... .......+.|+|++|+|||+||+.+++.+..... . .+...+.....
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 3778888777777655421 0233457889999999999999999987643211 1 12222121111
Q ss_pred cCCCChHHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCC-----------ChhHHHHHhcccCCCCCCc
Q 037291 211 ETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVN-----------EVGQLEGLIGELDQFGPGS 279 (349)
Q Consensus 211 ~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~-----------~~~~~~~l~~~~~~~~~gs 279 (349)
....+.. .. .+...+... +.-+|+||+++ ....+..+...+.....+.
T Consensus 112 ~~~~g~~--~~----------------~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~ 170 (309)
T 3syl_A 112 GQYIGHT--AP----------------KTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDL 170 (309)
T ss_dssp CSSTTCH--HH----------------HHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTC
T ss_pred hhccccc--HH----------------HHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCE
Confidence 1011100 00 000112111 23489999997 3334455555555445567
Q ss_pred EEEEEeCChh----------HHHhcCCCCCcEEEcCCCCHHHHHHHHHhhhc
Q 037291 280 RIVVTTRDKG----------VLEKFRGEEKKIHRVNGLEFEEAFEHFCNFAF 321 (349)
Q Consensus 280 ~IIiTtR~~~----------~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 321 (349)
.+|+||.... +... ....+++++++.++..+++..++-
T Consensus 171 ~~i~~~~~~~~~~~~~~~~~l~~R----~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 171 VVILAGYADRMENFFQSNPGFRSR----IAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp EEEEEECHHHHHHHHHHSTTHHHH----EEEEEEECCCCHHHHHHHHHHHHH
T ss_pred EEEEeCChHHHHHHHhhCHHHHHh----CCeEEEcCCcCHHHHHHHHHHHHH
Confidence 8888886432 2222 236899999999999999987763
No 45
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.77 E-value=2.5e-09 Score=109.52 Aligned_cols=68 Identities=18% Similarity=0.301 Sum_probs=60.6
Q ss_pred CCcccccCCccccHHHHHHHhhCceEEEEecCCCCCchhhHHHHHHHHHhh-hhCCCeEEEEeeecCCc
Q 037291 1 MDDEKLRRGDEISDALLNAIQGSKISVVIFSKDYGSSKWCLNELVKILECK-HTNRQIIIPVFYGVSPS 68 (349)
Q Consensus 1 ~d~~~~~~g~~~~~~i~~ai~~s~~~ivv~S~~y~~S~~cl~El~~i~~~~-~~~~~~vlPvfy~v~p~ 68 (349)
+++.++.+|+.+.++|.+||++||.+|+|+|++|+.|.||..|+..++.+. ++++.+||||||+--|.
T Consensus 707 ~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s~wc~~e~~~a~~~~~~~~~~~~i~i~~~~~~~ 775 (844)
T 3j0a_A 707 FEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRDGWCLEAFSYAQGRCLSDLNSALIMVVVGSLSQ 775 (844)
T ss_dssp CSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHHTSTTHHHHHHHSCCCCSSCTTEEEEESSCCCS
T ss_pred EEccccCCCchHHHHHHHHHHHhCeEEEEeccccccChHHHHHHHHHHHHHHHhcCCcEEEEEeccCCh
Confidence 367899999999999999999999999999999999999999998887655 56677999999986554
No 46
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.73 E-value=3.6e-08 Score=89.81 Aligned_cols=172 Identities=16% Similarity=0.191 Sum_probs=100.6
Q ss_pred CCCCcccccchhhhHHHhhhhc--CCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHH
Q 037291 143 SSNGLVGLNSRIEQIKPFLCMD--LSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQ 220 (349)
Q Consensus 143 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 220 (349)
....++|++..++.+..++... .......+.|+|++|+|||+||+.+++.....| +.+. ... ......+.
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~---~~~~-~~~----~~~~~~~~ 98 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANI---KTTA-APM----IEKSGDLA 98 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCE---EEEE-GGG----CCSHHHHH
T ss_pred CHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe---EEec-chh----ccchhHHH
Confidence 4467999999999999888753 123455688999999999999999988764332 1121 111 11111111
Q ss_pred HHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCCh--hHHHHHhcccCCC------------------CCCcE
Q 037291 221 KEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEV--GQLEGLIGELDQF------------------GPGSR 280 (349)
Q Consensus 221 ~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~------------------~~gs~ 280 (349)
.. +.. ..+..+|+||+++.. .....+...+... .++..
T Consensus 99 -~~-------------------~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (338)
T 3pfi_A 99 -AI-------------------LTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFT 156 (338)
T ss_dssp -HH-------------------HHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCE
T ss_pred -HH-------------------HHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeE
Confidence 10 110 234678999999744 2333333322211 11245
Q ss_pred EEEEeCChhH-HHhcCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCcc
Q 037291 281 IVVTTRDKGV-LEKFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNPL 346 (349)
Q Consensus 281 IIiTtR~~~~-~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL 346 (349)
+|.+|..... ...+.......+++++++.++..+++...+-.... .-..+..+.+++.+.|+|-
T Consensus 157 ~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~--~~~~~~~~~l~~~~~G~~r 221 (338)
T 3pfi_A 157 LIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK--TCEEKAALEIAKRSRSTPR 221 (338)
T ss_dssp EEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC--EECHHHHHHHHHTTTTCHH
T ss_pred EEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHCcCHH
Confidence 6666654332 11111113468999999999999999877633221 1123456778888888873
No 47
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.68 E-value=3.3e-07 Score=82.14 Aligned_cols=155 Identities=17% Similarity=0.233 Sum_probs=91.1
Q ss_pred CCCcccccchhhhHHHhhhhc----------CCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCC
Q 037291 144 SNGLVGLNSRIEQIKPFLCMD----------LSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETG 213 (349)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~----------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 213 (349)
-..++|.+..++.+.+++... .-...+.+.|+|++|+|||+||+.+++..... ++. +.
T Consensus 14 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~-----~i~----v~--- 81 (301)
T 3cf0_A 14 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN-----FIS----IK--- 81 (301)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCE-----EEE----EC---
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCC-----EEE----EE---
Confidence 356889888888887766431 01345678899999999999999999876422 221 11
Q ss_pred CChHHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCChh----------------HHHHHhcccCCC--
Q 037291 214 GGLEHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEVG----------------QLEGLIGELDQF-- 275 (349)
Q Consensus 214 ~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~~----------------~~~~l~~~~~~~-- 275 (349)
...+ .+...+.. ...+...+.......+.+|+||+++... ....++..+...
T Consensus 82 --~~~l----~~~~~g~~----~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~ 151 (301)
T 3cf0_A 82 --GPEL----LTMWFGES----EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 151 (301)
T ss_dssp --HHHH----HHHHHTTC----TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT
T ss_pred --hHHH----HhhhcCch----HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC
Confidence 1112 22221111 1122233333334567999999997431 123343333221
Q ss_pred CCCcEEEEEeCChhHHHh--cC-CCCCcEEEcCCCCHHHHHHHHHhhh
Q 037291 276 GPGSRIVVTTRDKGVLEK--FR-GEEKKIHRVNGLEFEEAFEHFCNFA 320 (349)
Q Consensus 276 ~~gs~IIiTtR~~~~~~~--~~-~~~~~~~~l~~L~~~ea~~Lf~~~a 320 (349)
..+..||.||.....+.. +. ......+.++..+.++-.+++..+.
T Consensus 152 ~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l 199 (301)
T 3cf0_A 152 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 199 (301)
T ss_dssp TSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred CCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHH
Confidence 235677777776543221 11 1134688999999999999887765
No 48
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.67 E-value=1.8e-07 Score=85.30 Aligned_cols=179 Identities=16% Similarity=0.238 Sum_probs=102.7
Q ss_pred CCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcC-CcceEEEEeccccccCCCChHHHHH
Q 037291 143 SSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGE-FDGSCFMSDVRRNSETGGGLEHLQK 221 (349)
Q Consensus 143 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~ 221 (349)
....++|.+..++.+...+..+ ..+.+.++|++|+||||+|+.++..+... +...+.-.+ .+. ..+...+ +
T Consensus 23 ~~~~~~g~~~~~~~L~~~i~~g---~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~---~~~-~~~~~~i-r 94 (340)
T 1sxj_C 23 TLDEVYGQNEVITTVRKFVDEG---KLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELN---ASD-DRGIDVV-R 94 (340)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTT---CCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEEC---TTS-CCSHHHH-H
T ss_pred cHHHhcCcHHHHHHHHHHHhcC---CCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEc---Ccc-cccHHHH-H
Confidence 3456788888888888877754 33348899999999999999999976432 221111111 111 1222222 1
Q ss_pred HHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCCh--hHHHHHhcccCCCCCCcEEEEEeCChh-HHHhcCCCC
Q 037291 222 EMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEV--GQLEGLIGELDQFGPGSRIVVTTRDKG-VLEKFRGEE 298 (349)
Q Consensus 222 ~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTtR~~~-~~~~~~~~~ 298 (349)
..+..+..... .+.+.+-++|+|+++.. ...+.+...+......+++|++|.... +...+.. .
T Consensus 95 ~~i~~~~~~~~-------------~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~s-R 160 (340)
T 1sxj_C 95 NQIKDFASTRQ-------------IFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLS-Q 160 (340)
T ss_dssp THHHHHHHBCC-------------SSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHT-T
T ss_pred HHHHHHHhhcc-------------cCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHh-h
Confidence 22211110000 01234678999999643 344455544444445667777776542 2111111 3
Q ss_pred CcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCc
Q 037291 299 KKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNP 345 (349)
Q Consensus 299 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~P 345 (349)
...+++.+++.++..+.+...+-...... ..+..+.+++.++|.+
T Consensus 161 ~~~~~~~~l~~~~~~~~l~~~~~~~~~~i--~~~~~~~i~~~s~G~~ 205 (340)
T 1sxj_C 161 CTRFRFQPLPQEAIERRIANVLVHEKLKL--SPNAEKALIELSNGDM 205 (340)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHTTTCCB--CHHHHHHHHHHHTTCH
T ss_pred ceeEeccCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCH
Confidence 35789999999999888877653222111 1245677888888865
No 49
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.66 E-value=2.1e-06 Score=77.70 Aligned_cols=178 Identities=16% Similarity=0.121 Sum_probs=96.9
Q ss_pred CCCcccccchhhhHHHhhhhc---------CCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCC-
Q 037291 144 SNGLVGLNSRIEQIKPFLCMD---------LSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETG- 213 (349)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~---------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~- 213 (349)
-..++|.+...+.|.+.+... .....+.+.|+|++|+|||+||+.+++.... ..++..+........
T Consensus 11 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~---~~~~~i~~~~l~~~~~ 87 (322)
T 1xwi_A 11 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN---STFFSISSSDLVSKWL 87 (322)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTS---CEEEEEECCSSCCSSC
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCC---CcEEEEEhHHHHhhhh
Confidence 356788888777777655310 0123467889999999999999999987621 112222121111101
Q ss_pred CChHHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCChh-------------HHHHHhcccCC---CCC
Q 037291 214 GGLEHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEVG-------------QLEGLIGELDQ---FGP 277 (349)
Q Consensus 214 ~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~~-------------~~~~l~~~~~~---~~~ 277 (349)
.........+ +......++.+|+||+++... ....++..+.. ...
T Consensus 88 g~~~~~~~~l-------------------f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 148 (322)
T 1xwi_A 88 GESEKLVKNL-------------------FQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDND 148 (322)
T ss_dssp CSCHHHHHHH-------------------HHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCT
T ss_pred hHHHHHHHHH-------------------HHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCC
Confidence 0111111111 111223467899999997541 12233333322 134
Q ss_pred CcEEEEEeCChhHHH-hcCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCc
Q 037291 278 GSRIVVTTRDKGVLE-KFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNP 345 (349)
Q Consensus 278 gs~IIiTtR~~~~~~-~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~P 345 (349)
+..||.||.....+. .+.......+.++..+.++..+++..+.-....... ......+++.+.|..
T Consensus 149 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~--~~~l~~la~~t~G~s 215 (322)
T 1xwi_A 149 GILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLT--EADFRELGRKTDGYS 215 (322)
T ss_dssp TEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCC--HHHHHHHHHTCTTCC
T ss_pred CEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCC--HHHHHHHHHHcCCCC
Confidence 456666665442211 110013467899999999999999887633221111 234567888888763
No 50
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.65 E-value=7.7e-07 Score=81.69 Aligned_cols=173 Identities=14% Similarity=0.108 Sum_probs=97.6
Q ss_pred CCCCcccccchhhhHHHhhhhc---------CCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCC
Q 037291 143 SSNGLVGLNSRIEQIKPFLCMD---------LSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETG 213 (349)
Q Consensus 143 ~~~~~vGr~~~~~~l~~~L~~~---------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 213 (349)
.-..++|.+..++.|.+.+... .....+-+.|+|++|+|||+||+.+++.....| +..+........
T Consensus 49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~----~~v~~~~l~~~~ 124 (355)
T 2qp9_X 49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF----FSVSSSDLVSKW 124 (355)
T ss_dssp CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEE----EEEEHHHHHSCC
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE----EEeeHHHHhhhh
Confidence 3456899999988888776321 012235688999999999999999999874321 111111110000
Q ss_pred C-ChHHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCChh-------------HHHHHhcccCC---CC
Q 037291 214 G-GLEHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEVG-------------QLEGLIGELDQ---FG 276 (349)
Q Consensus 214 ~-~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~~-------------~~~~l~~~~~~---~~ 276 (349)
. ..... +...+......++.+|+||+++... ....++..+.. ..
T Consensus 125 ~g~~~~~-------------------~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~ 185 (355)
T 2qp9_X 125 MGESEKL-------------------VKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDS 185 (355)
T ss_dssp ---CHHH-------------------HHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---
T ss_pred cchHHHH-------------------HHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccC
Confidence 0 00011 1111122223467899999997432 12333333321 13
Q ss_pred CCcEEEEEeCChh-----HHHhcCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCC
Q 037291 277 PGSRIVVTTRDKG-----VLEKFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGN 344 (349)
Q Consensus 277 ~gs~IIiTtR~~~-----~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~ 344 (349)
.+..||.||.... +... ....+.++..+.++..+++..++........ ......|++.+.|.
T Consensus 186 ~~v~vI~atn~~~~ld~al~rR----f~~~i~i~~P~~~~r~~il~~~l~~~~~~~~--~~~l~~la~~t~G~ 252 (355)
T 2qp9_X 186 QGVLVLGATNIPWQLDSAIRRR----FERRIYIPLPDLAARTTMFEINVGDTPSVLT--KEDYRTLGAMTEGY 252 (355)
T ss_dssp CCEEEEEEESCGGGSCHHHHHT----CCEEEECCCCCHHHHHHHHHHHHTTSCBCCC--HHHHHHHHHHTTTC
T ss_pred CCeEEEeecCCcccCCHHHHcc----cCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHcCCC
Confidence 4556666776543 2221 4467889999999999999887643322111 23456788888874
No 51
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.65 E-value=4.8e-07 Score=84.12 Aligned_cols=178 Identities=15% Similarity=0.091 Sum_probs=96.8
Q ss_pred CCCCcccccchhhhHHHhhhhc---------CCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCC
Q 037291 143 SSNGLVGLNSRIEQIKPFLCMD---------LSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETG 213 (349)
Q Consensus 143 ~~~~~vGr~~~~~~l~~~L~~~---------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 213 (349)
....++|.+..++.+..++... .....+.+.|+|++|+|||+||+.+++..... ++..+........
T Consensus 113 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~----~~~v~~~~l~~~~ 188 (389)
T 3vfd_A 113 KFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNAT----FFNISAASLTSKY 188 (389)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCE----EEEECSCCC----
T ss_pred ChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCc----EEEeeHHHhhccc
Confidence 3467999999999998877321 01224678899999999999999998875322 2222121111100
Q ss_pred C-ChHHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCCh-------------hHHHHHhcccCC----C
Q 037291 214 G-GLEHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEV-------------GQLEGLIGELDQ----F 275 (349)
Q Consensus 214 ~-~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~-------------~~~~~l~~~~~~----~ 275 (349)
. ....... ..+.......+.+|+||+++.. .....++..+.. .
T Consensus 189 ~g~~~~~~~-------------------~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 249 (389)
T 3vfd_A 189 VGEGEKLVR-------------------ALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAG 249 (389)
T ss_dssp ---CHHHHH-------------------HHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC---
T ss_pred cchHHHHHH-------------------HHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccC
Confidence 0 0011111 1111222335679999999644 011222222211 1
Q ss_pred CCCcEEEEEeCChhHHH-hcCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCc
Q 037291 276 GPGSRIVVTTRDKGVLE-KFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNP 345 (349)
Q Consensus 276 ~~gs~IIiTtR~~~~~~-~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~P 345 (349)
.....||.||.....+. .+.......+.+...+.++..+++...+-....... .+....+++.+.|..
T Consensus 250 ~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~--~~~~~~la~~~~g~~ 318 (389)
T 3vfd_A 250 DDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLT--QKELAQLARMTDGYS 318 (389)
T ss_dssp --CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSC--HHHHHHHHHHTTTCC
T ss_pred CCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHcCCCC
Confidence 23345666666533211 111113357889999999999999877643322221 234667888887754
No 52
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.65 E-value=9.4e-08 Score=78.74 Aligned_cols=51 Identities=20% Similarity=0.278 Sum_probs=42.2
Q ss_pred CCCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhc
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTG 195 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~ 195 (349)
.....++||+.+++.+.+.+... ..+.+.|+|++|+|||+||+.+++....
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~~---~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 19 GKLDPVIGRDTEIRRAIQILSRR---TKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSS---SSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred cccchhhcchHHHHHHHHHHhCC---CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 34567999999999999988653 3456789999999999999999987644
No 53
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.65 E-value=1.1e-06 Score=80.03 Aligned_cols=167 Identities=11% Similarity=0.122 Sum_probs=97.1
Q ss_pred hhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCc---------------------ceEEEEecccccc
Q 037291 153 RIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFD---------------------GSCFMSDVRRNSE 211 (349)
Q Consensus 153 ~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~---------------------~~~~~~~~~~~~~ 211 (349)
..+.+...+..+ .-.+.+.++|++|+|||++|+.+++.+..... ...++. ......
T Consensus 10 ~~~~l~~~i~~~--~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~-~~~~~~ 86 (334)
T 1a5t_A 10 DFEKLVASYQAG--RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLA-PEKGKN 86 (334)
T ss_dssp HHHHHHHHHHTT--CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEEC-CCTTCS
T ss_pred HHHHHHHHHHcC--CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEe-ccccCC
Confidence 344555555433 23456889999999999999999987643221 011111 000000
Q ss_pred CCCChHHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCCh--hHHHHHhcccCCCCCCcEEEEEeCChh
Q 037291 212 TGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEV--GQLEGLIGELDQFGPGSRIVVTTRDKG 289 (349)
Q Consensus 212 ~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTtR~~~ 289 (349)
..+... .+.+...+... -..+++-++|+|+++.. ...+.+...+....+++.+|++|.+..
T Consensus 87 -~~~i~~-ir~l~~~~~~~---------------~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~ 149 (334)
T 1a5t_A 87 -TLGVDA-VREVTEKLNEH---------------ARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPE 149 (334)
T ss_dssp -SBCHHH-HHHHHHHTTSC---------------CTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGG
T ss_pred -CCCHHH-HHHHHHHHhhc---------------cccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChH
Confidence 111111 11111111100 01245778999999754 445667766665556777777776653
Q ss_pred -HHHhcCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCccc
Q 037291 290 -VLEKFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNPLV 347 (349)
Q Consensus 290 -~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLa 347 (349)
+...+.. ....+++.+++.++..+++.... ..+ .+.+..+++.++|.|..
T Consensus 150 ~l~~ti~S-Rc~~~~~~~~~~~~~~~~L~~~~----~~~---~~~~~~l~~~s~G~~r~ 200 (334)
T 1a5t_A 150 RLLATLRS-RCRLHYLAPPPEQYAVTWLSREV----TMS---QDALLAALRLSAGSPGA 200 (334)
T ss_dssp GSCHHHHT-TSEEEECCCCCHHHHHHHHHHHC----CCC---HHHHHHHHHHTTTCHHH
T ss_pred hCcHHHhh-cceeeeCCCCCHHHHHHHHHHhc----CCC---HHHHHHHHHHcCCCHHH
Confidence 3222211 34689999999999999998775 111 23457788999998853
No 54
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.62 E-value=5.8e-07 Score=85.04 Aligned_cols=180 Identities=17% Similarity=0.137 Sum_probs=101.1
Q ss_pred CCCCCcccccchhhhHHHhhhhc---------CCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccC
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMD---------LSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSET 212 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~---------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 212 (349)
.....++|.+...+.|.+.+... .....+.+.|+|++|+|||+||+.+++.... .-|+. ++.
T Consensus 131 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~----~~~~~----v~~- 201 (444)
T 2zan_A 131 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN----STFFS----ISS- 201 (444)
T ss_dssp CCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS----SEEEE----ECC-
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC----CCEEE----EeH-
Confidence 33467899999888888766310 0123467889999999999999999987621 12222 110
Q ss_pred CCChHHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCCh-------------hHHHHHhcccCCC---C
Q 037291 213 GGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEV-------------GQLEGLIGELDQF---G 276 (349)
Q Consensus 213 ~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~-------------~~~~~l~~~~~~~---~ 276 (349)
.. +. ....+ .....+...+.......+.+|+||+++.. .....++..+... .
T Consensus 202 -~~---l~----~~~~g----~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 269 (444)
T 2zan_A 202 -SD---LV----SKWLG----ESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDN 269 (444)
T ss_dssp -C--------------------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCC
T ss_pred -HH---HH----hhhcc----hHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCC
Confidence 01 10 11000 01122222222233456789999999754 1234444444332 3
Q ss_pred CCcEEEEEeCChhHHHh-cCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCC
Q 037291 277 PGSRIVVTTRDKGVLEK-FRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGN 344 (349)
Q Consensus 277 ~gs~IIiTtR~~~~~~~-~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~ 344 (349)
.+..||.||.....+.. +.......+.++..+.++..++|..++........ ......|++.+.|.
T Consensus 270 ~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~--~~~l~~la~~t~G~ 336 (444)
T 2zan_A 270 DGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLT--EADFQELGRKTDGY 336 (444)
T ss_dssp SSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECC--HHHHHHHHHHTTTC
T ss_pred CCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCC--HHHHHHHHHHcCCC
Confidence 45567777765432111 11113467889999999999999887633221111 23456788888885
No 55
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.52 E-value=9.3e-07 Score=84.19 Aligned_cols=149 Identities=15% Similarity=0.166 Sum_probs=82.7
Q ss_pred CCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCC------cceEEEEeccccccCCCCh
Q 037291 143 SSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEF------DGSCFMSDVRRNSETGGGL 216 (349)
Q Consensus 143 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~ 216 (349)
..+.++||+.+++.+...|... ....+.|+|++|+|||+||+.+++.+...+ ...++..+..
T Consensus 178 ~ld~iiGr~~~i~~l~~~l~r~---~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~--------- 245 (468)
T 3pxg_A 178 SLDPVIGRSKEIQRVIEVLSRR---TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG--------- 245 (468)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCS---SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC------------
T ss_pred CCCCccCcHHHHHHHHHHHhcc---CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC---------
Confidence 3467999999999999998754 334567999999999999999999874332 1112211110
Q ss_pred HHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCChhHHHHHhcccCCCCCCcEEEEEeCChhH---HH-
Q 037291 217 EHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEVGQLEGLIGELDQFGPGSRIVVTTRDKGV---LE- 292 (349)
Q Consensus 217 ~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IIiTtR~~~~---~~- 292 (349)
... .......+...+...-..++.+|++| ...+..+.+...+. ....++|.+|..... ..
T Consensus 246 --------~~~----~g~~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~ 309 (468)
T 3pxg_A 246 --------TKY----RGEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEK 309 (468)
T ss_dssp -------------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTT
T ss_pred --------ccc----cchHHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhc
Confidence 000 00001222233333334567899999 22222233333332 223456655544331 00
Q ss_pred --hcCCCCCcEEEcCCCCHHHHHHHHHhhh
Q 037291 293 --KFRGEEKKIHRVNGLEFEEAFEHFCNFA 320 (349)
Q Consensus 293 --~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 320 (349)
.+.. ....+.+++++.++..+++...+
T Consensus 310 ~~al~~-Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 310 DAALER-RFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp CSHHHH-SEEEEECCCCCHHHHHHHHHHTT
T ss_pred CHHHHH-hCccceeCCCCHHHHHHHHHHHH
Confidence 0000 23479999999999999998654
No 56
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.52 E-value=3.3e-07 Score=93.77 Aligned_cols=153 Identities=16% Similarity=0.146 Sum_probs=82.7
Q ss_pred CCCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCC------cceEEEEeccccccC---
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEF------DGSCFMSDVRRNSET--- 212 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~--- 212 (349)
...+.++||+.+++.+...|... ..+.+.|+|++|+|||+||+.+++.+.... ...++..+.......
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~~~---~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~ 243 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILLRR---TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKY 243 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHCS---SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---------
T ss_pred CCCcccCCcHHHHHHHHHHHhcC---CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCcc
Confidence 34567999999999999988754 334568999999999999999999764311 222332222111000
Q ss_pred CCChHHHHHHHHHHhhcccccccCCCchHHHHHHhC-CCeEEEEEeCCCChh----------HHHHHhcccCCCCCCcEE
Q 037291 213 GGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERVW-RMKVLIVLDDVNEVG----------QLEGLIGELDQFGPGSRI 281 (349)
Q Consensus 213 ~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~-~k~~LlVlDdv~~~~----------~~~~l~~~~~~~~~gs~I 281 (349)
....... +...+..... +++.+|+||+++... ..+.+...+. .....+
T Consensus 244 ~g~~~~~-------------------l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~--~~~i~~ 302 (854)
T 1qvr_A 244 RGEFEER-------------------LKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA--RGELRL 302 (854)
T ss_dssp --CHHHH-------------------HHHHHHHHHTTCSSEEEEECCC-------------------HHHHH--TTCCCE
T ss_pred chHHHHH-------------------HHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh--CCCeEE
Confidence 0000001 1112222222 367899999997542 1112222222 123456
Q ss_pred EEEeCChhHH-----HhcCCCCCcEEEcCCCCHHHHHHHHHhh
Q 037291 282 VVTTRDKGVL-----EKFRGEEKKIHRVNGLEFEEAFEHFCNF 319 (349)
Q Consensus 282 IiTtR~~~~~-----~~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 319 (349)
|.+|...... ..+.. ....+.+++++.++..+++...
T Consensus 303 I~at~~~~~~~~~~d~aL~r-Rf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 303 IGATTLDEYREIEKDPALER-RFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp EEEECHHHHHHHTTCTTTCS-CCCCEEECCCCHHHHHHHHHHH
T ss_pred EEecCchHHhhhccCHHHHh-CCceEEeCCCCHHHHHHHHHhh
Confidence 6555543321 11111 2345899999999999998643
No 57
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.47 E-value=4.7e-06 Score=77.96 Aligned_cols=155 Identities=21% Similarity=0.276 Sum_probs=91.0
Q ss_pred CCCcccccchhhhHHHhhhhc----------CCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCC
Q 037291 144 SNGLVGLNSRIEQIKPFLCMD----------LSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETG 213 (349)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~----------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 213 (349)
-..+.|.+..+++|.+.+... .-...+-|.++|++|+|||+||+++++.....| +...........
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~----~~v~~s~l~sk~ 255 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANF----IFSPASGIVDKY 255 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE----EEEEGGGTCCSS
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE----EEEehhhhcccc
Confidence 356788888888887765421 123457888999999999999999999875432 222222222111
Q ss_pred CCh-HHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCChh----------------HHHHHhcccCCC-
Q 037291 214 GGL-EHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEVG----------------QLEGLIGELDQF- 275 (349)
Q Consensus 214 ~~~-~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~~----------------~~~~l~~~~~~~- 275 (349)
.+- ....+. .+...-...+++|++|+++... .+..++..+..+
T Consensus 256 ~Gese~~ir~-------------------~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 316 (437)
T 4b4t_L 256 IGESARIIRE-------------------MFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFD 316 (437)
T ss_dssp SSHHHHHHHH-------------------HHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSS
T ss_pred chHHHHHHHH-------------------HHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhccc
Confidence 111 111111 1122223568999999996320 133344443322
Q ss_pred -CCCcEEEEEeCChhHHHhc--C-CCCCcEEEcCCCCHHHHHHHHHhhhc
Q 037291 276 -GPGSRIVVTTRDKGVLEKF--R-GEEKKIHRVNGLEFEEAFEHFCNFAF 321 (349)
Q Consensus 276 -~~gs~IIiTtR~~~~~~~~--~-~~~~~~~~l~~L~~~ea~~Lf~~~a~ 321 (349)
..+..||.||...+.+... . +.-+..++++..+.++-.++|..+.-
T Consensus 317 ~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~ 366 (437)
T 4b4t_L 317 NLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTA 366 (437)
T ss_dssp CTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHH
T ss_pred CCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhc
Confidence 2345777788766543321 1 11356789998898888898887663
No 58
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.46 E-value=6.2e-07 Score=71.20 Aligned_cols=47 Identities=28% Similarity=0.242 Sum_probs=36.5
Q ss_pred CcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhh
Q 037291 146 GLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 146 ~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
.++|++..++++.+.+..- ......|.|+|++|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~-a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQL-SETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHH-TTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHH-hCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 5889999999998888654 2233456799999999999999998854
No 59
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.45 E-value=6.6e-06 Score=75.88 Aligned_cols=173 Identities=21% Similarity=0.259 Sum_probs=98.4
Q ss_pred CCcccccchhhhHHHhhhhc----------CCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCC
Q 037291 145 NGLVGLNSRIEQIKPFLCMD----------LSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGG 214 (349)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~----------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 214 (349)
+.+.|.+...++|.+.+... .-...+-+.++|++|+|||.||+++++.....| +............
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f----~~v~~s~l~sk~v 223 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKF----IRVSGAELVQKYI 223 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEE----EEEEGGGGSCSST
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCc----eEEEhHHhhcccc
Confidence 46788888888887665421 123356788999999999999999999875433 2222222211111
Q ss_pred C-hHHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCChh----------------HHHHHhcccCCCC-
Q 037291 215 G-LEHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEVG----------------QLEGLIGELDQFG- 276 (349)
Q Consensus 215 ~-~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~~----------------~~~~l~~~~~~~~- 276 (349)
+ .....+.++ ...-...+++|+||+++... .+..++..+..+.
T Consensus 224 Gese~~vr~lF-------------------~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 284 (405)
T 4b4t_J 224 GEGSRMVRELF-------------------VMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFET 284 (405)
T ss_dssp THHHHHHHHHH-------------------HHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTC
T ss_pred chHHHHHHHHH-------------------HHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCC
Confidence 1 112222221 12223468999999996321 1334444443332
Q ss_pred -CCcEEEEEeCChhHHHh--cC-CCCCcEEEcCCCCHHHHHHHHHhhhcCCCC-CCchHHHHHHHHHHHhcCC
Q 037291 277 -PGSRIVVTTRDKGVLEK--FR-GEEKKIHRVNGLEFEEAFEHFCNFAFKENH-CPTNLNWHSRRVVEYAKGN 344 (349)
Q Consensus 277 -~gs~IIiTtR~~~~~~~--~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~~i~~~~~G~ 344 (349)
.+..||.||...+.+.. +. +.-+..++++..+.++-.++|..+.-+-.. ...+ ...+++.+.|.
T Consensus 285 ~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd----l~~lA~~t~G~ 353 (405)
T 4b4t_J 285 SKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN----LRKVAEKMNGC 353 (405)
T ss_dssp CCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCC----HHHHHHHCCSC
T ss_pred CCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHCCCC
Confidence 34466777765543221 11 125688999999999999999877633221 1122 34556666654
No 60
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.41 E-value=3e-06 Score=80.84 Aligned_cols=155 Identities=15% Similarity=0.187 Sum_probs=88.9
Q ss_pred CCcccccchhhhHHHhhhhc----------CCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCC
Q 037291 145 NGLVGLNSRIEQIKPFLCMD----------LSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGG 214 (349)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~----------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 214 (349)
..++|.+..++++.+++... ......-+.|+|++|+|||+||+.+++.... .++..+.........
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~----~fv~vn~~~l~~~~~ 279 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA----FFFLINGPEIMSKLA 279 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSS----EEEEEEHHHHHTSCT
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCC----CEEEEEchHhhhhhc
Confidence 46899999999998877532 0123456889999999999999999887532 222222211111011
Q ss_pred ChHHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCCh-------------hHHHHHhcccCCC--CCCc
Q 037291 215 GLEHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEV-------------GQLEGLIGELDQF--GPGS 279 (349)
Q Consensus 215 ~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~-------------~~~~~l~~~~~~~--~~gs 279 (349)
+- .. ..+...+.....+++.+|+||+++.. .....|+..+... ..+.
T Consensus 280 g~--~~----------------~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v 341 (489)
T 3hu3_A 280 GE--SE----------------SNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (489)
T ss_dssp TH--HH----------------HHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCE
T ss_pred ch--hH----------------HHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCce
Confidence 00 00 00112233333456789999999411 1123333333221 2345
Q ss_pred EEEEEeCChhHH-HhcC--CCCCcEEEcCCCCHHHHHHHHHhhhc
Q 037291 280 RIVVTTRDKGVL-EKFR--GEEKKIHRVNGLEFEEAFEHFCNFAF 321 (349)
Q Consensus 280 ~IIiTtR~~~~~-~~~~--~~~~~~~~l~~L~~~ea~~Lf~~~a~ 321 (349)
+||.||.....+ ..+. ......+.+...+.++-.++|..++-
T Consensus 342 ~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~ 386 (489)
T 3hu3_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 386 (489)
T ss_dssp EEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTT
T ss_pred EEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHh
Confidence 666677655321 1111 11345789999999999999987763
No 61
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.39 E-value=6e-07 Score=80.41 Aligned_cols=50 Identities=18% Similarity=0.181 Sum_probs=37.6
Q ss_pred CCcccccchhhhHHHhhhhc-----------CCCCeeEEEEeccCccchHHHHHHHHHhhh
Q 037291 145 NGLVGLNSRIEQIKPFLCMD-----------LSDTVQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
+.++|.+..++.+...+... .......+.|+|++|+|||+||+.+++...
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45788888888887766540 011245677999999999999999998773
No 62
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.38 E-value=5.1e-07 Score=74.38 Aligned_cols=43 Identities=23% Similarity=0.240 Sum_probs=29.7
Q ss_pred chhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhh
Q 037291 152 SRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 152 ~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
..++.+..++..-.......++|+|++|+||||||+.++..+.
T Consensus 21 ~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 21 RALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp HHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3344444444332112357889999999999999999999774
No 63
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.37 E-value=2.3e-05 Score=73.30 Aligned_cols=154 Identities=19% Similarity=0.259 Sum_probs=89.4
Q ss_pred CCcccccchhhhHHHhhhhc----------CCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCC
Q 037291 145 NGLVGLNSRIEQIKPFLCMD----------LSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGG 214 (349)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~----------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 214 (349)
..+.|.+...++|.+.+... .-...+-|.++|++|+|||+||+++++.....| +............
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~f----i~vs~s~L~sk~v 284 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATF----IRVIGSELVQKYV 284 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEE----EEEEGGGGCCCSS
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCe----EEEEhHHhhcccC
Confidence 46888888888887754321 123467888999999999999999999875432 2222222211111
Q ss_pred Ch-HHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCChh----------------HHHHHhcccCCCC-
Q 037291 215 GL-EHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEVG----------------QLEGLIGELDQFG- 276 (349)
Q Consensus 215 ~~-~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~~----------------~~~~l~~~~~~~~- 276 (349)
+- ....+.+ +...-...+++|++|+++... .+..++..+..+.
T Consensus 285 Gesek~ir~l-------------------F~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 345 (467)
T 4b4t_H 285 GEGARMVREL-------------------FEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDP 345 (467)
T ss_dssp SHHHHHHHHH-------------------HHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCC
T ss_pred CHHHHHHHHH-------------------HHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCC
Confidence 11 1122221 122223568999999996321 1223333333222
Q ss_pred -CCcEEEEEeCChhHHHh--cC-CCCCcEEEcCCCCHHHHHHHHHhhhc
Q 037291 277 -PGSRIVVTTRDKGVLEK--FR-GEEKKIHRVNGLEFEEAFEHFCNFAF 321 (349)
Q Consensus 277 -~gs~IIiTtR~~~~~~~--~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~ 321 (349)
.+..||.||.....+.. +. +.-+..++++..+.++-.++|..+.-
T Consensus 346 ~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~ 394 (467)
T 4b4t_H 346 RGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSK 394 (467)
T ss_dssp TTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHT
T ss_pred CCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhc
Confidence 34456667765543211 11 12567899999999999999987763
No 64
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.37 E-value=4.5e-06 Score=74.79 Aligned_cols=52 Identities=19% Similarity=0.273 Sum_probs=39.3
Q ss_pred CCcccccchhhhHHHhhhhcC------CCCeeEEEEeccCccchHHHHHHHHHhhhcC
Q 037291 145 NGLVGLNSRIEQIKPFLCMDL------SDTVQIVGIWGMGGIGKTTLAEAIFDQFTGE 196 (349)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~~------~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 196 (349)
..++|.+..++.+...+.... ......+.|+|++|+|||++|+.+++.....
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~ 74 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT 74 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC
Confidence 357888888888877776531 1123578999999999999999999976443
No 65
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.35 E-value=5.5e-06 Score=77.40 Aligned_cols=154 Identities=18% Similarity=0.217 Sum_probs=89.4
Q ss_pred CCCcccccchhhhHHHhhhhc----------CCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCC
Q 037291 144 SNGLVGLNSRIEQIKPFLCMD----------LSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETG 213 (349)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~----------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 213 (349)
-..+.|.+...++|.+.+... .-...+-|.++|++|+|||.||+++++.....| +...........
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f----~~v~~s~l~~~~ 255 (434)
T 4b4t_M 180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATF----LKLAAPQLVQMY 255 (434)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE----EEEEGGGGCSSC
T ss_pred hHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCE----EEEehhhhhhcc
Confidence 356788888888887654321 123467888999999999999999999865432 222222222211
Q ss_pred CCh-HHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCCh-------h---------HHHHHhcccCCCC
Q 037291 214 GGL-EHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEV-------G---------QLEGLIGELDQFG 276 (349)
Q Consensus 214 ~~~-~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~-------~---------~~~~l~~~~~~~~ 276 (349)
.+- ....+.++. ..-...+++|++|+++.. . .+..++..+..+.
T Consensus 256 vGese~~ir~lF~-------------------~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~ 316 (434)
T 4b4t_M 256 IGEGAKLVRDAFA-------------------LAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFS 316 (434)
T ss_dssp SSHHHHHHHHHHH-------------------HHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSC
T ss_pred cchHHHHHHHHHH-------------------HHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccC
Confidence 111 122222221 111235799999999521 0 1234444444433
Q ss_pred C--CcEEEEEeCChhHHHhc--C-CCCCcEEEcCCCCHHHHHHHHHhhh
Q 037291 277 P--GSRIVVTTRDKGVLEKF--R-GEEKKIHRVNGLEFEEAFEHFCNFA 320 (349)
Q Consensus 277 ~--gs~IIiTtR~~~~~~~~--~-~~~~~~~~l~~L~~~ea~~Lf~~~a 320 (349)
. +..||.||...+.+... . +.-+..++++..+.++-.++|..+.
T Consensus 317 ~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~ 365 (434)
T 4b4t_M 317 SDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHS 365 (434)
T ss_dssp SSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHH
T ss_pred CCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHh
Confidence 2 34566677665543321 1 1245688999999998888887665
No 66
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.35 E-value=2.8e-06 Score=85.82 Aligned_cols=156 Identities=17% Similarity=0.224 Sum_probs=88.2
Q ss_pred CCCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcC------CcceEEEEecccccc---C
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGE------FDGSCFMSDVRRNSE---T 212 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~------f~~~~~~~~~~~~~~---~ 212 (349)
...+.++||+.+++.+.+.|... ....+.|+|++|+|||+||+.+++.+... ....+|..+...... .
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l~~~---~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~ 259 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVLCRR---RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKY 259 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSS---SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCC
T ss_pred CCCCCccCCHHHHHHHHHHHhcc---CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccc
Confidence 34467999999999999988754 34556799999999999999999876322 122333322211110 0
Q ss_pred CCChHHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCCh----------hHHHHHhcccCCCCCCcEEE
Q 037291 213 GGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEV----------GQLEGLIGELDQFGPGSRIV 282 (349)
Q Consensus 213 ~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~----------~~~~~l~~~~~~~~~gs~II 282 (349)
...+...++ ..+......++.+|+||+++.. .....++..+.. ....++|
T Consensus 260 ~g~~e~~l~-------------------~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-~~~~~~I 319 (758)
T 1r6b_X 260 RGDFEKRFK-------------------ALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVI 319 (758)
T ss_dssp SSCHHHHHH-------------------HHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-SCCCEEE
T ss_pred cchHHHHHH-------------------HHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-CCCeEEE
Confidence 011111111 1122222345789999999754 122223322221 2344666
Q ss_pred EEeCChhHHHhcC-----CCCCcEEEcCCCCHHHHHHHHHhhh
Q 037291 283 VTTRDKGVLEKFR-----GEEKKIHRVNGLEFEEAFEHFCNFA 320 (349)
Q Consensus 283 iTtR~~~~~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a 320 (349)
.+|.......... ......+.+++++.++..+++....
T Consensus 320 ~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 320 GSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp EEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred EEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 6665443211110 0022468999999999988887543
No 67
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.31 E-value=1.2e-05 Score=76.15 Aligned_cols=155 Identities=20% Similarity=0.224 Sum_probs=87.1
Q ss_pred CCCcccccchhhhHHHhhhhcC---------CCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCC
Q 037291 144 SNGLVGLNSRIEQIKPFLCMDL---------SDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGG 214 (349)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~---------~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 214 (349)
...++|.+..++++.+++..-. ..-.+-+.|+|++|+|||+||+.++......| +..+.........
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f----~~is~~~~~~~~~ 90 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPF----FHISGSDFVELFV 90 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCE----EEEEGGGTTTCCT
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCe----eeCCHHHHHHHHh
Confidence 3467888887777766543210 01234588999999999999999998764332 2222222221011
Q ss_pred ChHHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCCh----------------hHHHHHhcccCCC--C
Q 037291 215 GLEHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEV----------------GQLEGLIGELDQF--G 276 (349)
Q Consensus 215 ~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~----------------~~~~~l~~~~~~~--~ 276 (349)
+.. . ..+...+.......+.+|+||+++.. ..+..++..+..+ .
T Consensus 91 g~~---~---------------~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~ 152 (476)
T 2ce7_A 91 GVG---A---------------ARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK 152 (476)
T ss_dssp THH---H---------------HHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGG
T ss_pred ccc---H---------------HHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCC
Confidence 100 0 00112233333456889999999532 1234444333222 2
Q ss_pred CCcEEEEEeCChhHHHh--cC-CCCCcEEEcCCCCHHHHHHHHHhhh
Q 037291 277 PGSRIVVTTRDKGVLEK--FR-GEEKKIHRVNGLEFEEAFEHFCNFA 320 (349)
Q Consensus 277 ~gs~IIiTtR~~~~~~~--~~-~~~~~~~~l~~L~~~ea~~Lf~~~a 320 (349)
.+..||.||.....+.. .. ..-...+.++..+.++-.+++..++
T Consensus 153 ~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~ 199 (476)
T 2ce7_A 153 EGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHT 199 (476)
T ss_dssp GTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred CCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHH
Confidence 35577777776654322 11 1134578899999888888887665
No 68
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.31 E-value=4.1e-07 Score=79.95 Aligned_cols=157 Identities=19% Similarity=0.257 Sum_probs=85.9
Q ss_pred CCCCCcccccchhhhHHHhhhhc---------CCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccC
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMD---------LSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSET 212 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~---------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 212 (349)
.....++|.+..++.+.+++..- .....+-+.|+|++|+|||+||+.+++.....|-. + +......
T Consensus 8 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~---v-~~~~~~~- 82 (268)
T 2r62_A 8 VRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFS---M-GGSSFIE- 82 (268)
T ss_dssp CCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCC---C-CSCTTTT-
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEE---e-chHHHHH-
Confidence 34467999998888887766521 01123347799999999999999999976543321 1 0100100
Q ss_pred CCChHHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCChh-----------------HHHHHhcccCCC
Q 037291 213 GGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEVG-----------------QLEGLIGELDQF 275 (349)
Q Consensus 213 ~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~~-----------------~~~~l~~~~~~~ 275 (349)
.... .....+...+.......+.+|+||+++... .+..++..+...
T Consensus 83 -------------~~~~----~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 145 (268)
T 2r62_A 83 -------------MFVG----LGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGF 145 (268)
T ss_dssp -------------SCSS----SCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCS
T ss_pred -------------hhcc----hHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCc
Confidence 0000 001111122222223456799999996431 123343333322
Q ss_pred C---CCcEEEEEeCChhHHH-hc-C-CCCCcEEEcCCCCHHHHHHHHHhhh
Q 037291 276 G---PGSRIVVTTRDKGVLE-KF-R-GEEKKIHRVNGLEFEEAFEHFCNFA 320 (349)
Q Consensus 276 ~---~gs~IIiTtR~~~~~~-~~-~-~~~~~~~~l~~L~~~ea~~Lf~~~a 320 (349)
. ....||.||.....+. .+ . ......+.++.++.++..+++...+
T Consensus 146 ~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 146 GSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp SCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred ccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 2 2245677776554221 11 1 0123568888999999888887665
No 69
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.31 E-value=4.7e-06 Score=73.03 Aligned_cols=50 Identities=18% Similarity=0.157 Sum_probs=35.6
Q ss_pred CCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhh
Q 037291 144 SNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
...++|.+..+..+.+.+..- ......+.|+|++|+|||+||+.+++...
T Consensus 5 f~~~ig~~~~~~~~~~~~~~~-~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 5 KDNLLGEANSFLEVLEQVSHL-APLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp -----CCCHHHHHHHHHHHHH-TTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred cccceeCCHHHHHHHHHHHHH-hCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 356899999998888777653 22235677999999999999999998653
No 70
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.30 E-value=1.1e-06 Score=73.80 Aligned_cols=62 Identities=19% Similarity=0.138 Sum_probs=40.2
Q ss_pred CCCCcccccc----hhhhHHHhhhhcCCC-CeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEE
Q 037291 143 SSNGLVGLNS----RIEQIKPFLCMDLSD-TVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMS 204 (349)
Q Consensus 143 ~~~~~vGr~~----~~~~l~~~L~~~~~~-~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 204 (349)
..++|++... .++.+.+++...... ....+.|+|++|+|||+||+.+++.........+|+.
T Consensus 23 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 23 SLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp CTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 3456666543 334445555443111 1267889999999999999999998765544455554
No 71
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.29 E-value=4.7e-06 Score=84.15 Aligned_cols=149 Identities=15% Similarity=0.142 Sum_probs=84.2
Q ss_pred CCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCC------cceEEEEeccccccCCCCh
Q 037291 143 SSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEF------DGSCFMSDVRRNSETGGGL 216 (349)
Q Consensus 143 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~ 216 (349)
..+.++||+.+++.+...|... ...-+.|+|++|+|||++|+.+++.+.... ...++..+.
T Consensus 178 ~ld~iiG~~~~i~~l~~~l~~~---~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~---------- 244 (758)
T 3pxi_A 178 SLDPVIGRSKEIQRVIEVLSRR---TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM---------- 244 (758)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCS---SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC------------
T ss_pred CCCCccCchHHHHHHHHHHhCC---CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc----------
Confidence 3467999999999999998764 334578999999999999999999863321 111221111
Q ss_pred HHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCChhHHHHHhcccCCCCCCcEEEEEeCChhHHH----
Q 037291 217 EHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEVGQLEGLIGELDQFGPGSRIVVTTRDKGVLE---- 292 (349)
Q Consensus 217 ~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IIiTtR~~~~~~---- 292 (349)
.....+.....+...+......++.+|++| ...+....+...+. ....++|.||.......
T Consensus 245 -----------g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~ 309 (758)
T 3pxi_A 245 -----------GTKYRGEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEK 309 (758)
T ss_dssp -------------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTT
T ss_pred -----------cccccchHHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhc
Confidence 000000011233344444445678899999 22222233333333 22346666665443100
Q ss_pred --hcCCCCCcEEEcCCCCHHHHHHHHHhhh
Q 037291 293 --KFRGEEKKIHRVNGLEFEEAFEHFCNFA 320 (349)
Q Consensus 293 --~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 320 (349)
.+.. ....+.+++++.++..+++....
T Consensus 310 d~al~r-Rf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 310 DAALER-RFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp CSHHHH-SEEEEECCCCCHHHHHHHHHHTT
T ss_pred cHHHHh-hCcEEEeCCCCHHHHHHHHHHHH
Confidence 0000 22579999999999999998554
No 72
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.28 E-value=6.1e-06 Score=71.95 Aligned_cols=155 Identities=19% Similarity=0.196 Sum_probs=83.5
Q ss_pred CCCCcccccchhhhHHHhhhhcC---------CCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCC
Q 037291 143 SSNGLVGLNSRIEQIKPFLCMDL---------SDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETG 213 (349)
Q Consensus 143 ~~~~~vGr~~~~~~l~~~L~~~~---------~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 213 (349)
....++|.+..++.+.+++..-. ....+-+.|+|++|+||||||+.+++.....| +.+. ........
T Consensus 10 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~i~-~~~~~~~~ 85 (257)
T 1lv7_A 10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTIS-GSDFVEMF 85 (257)
T ss_dssp CGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCE---EEEC-SCSSTTSC
T ss_pred CHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCE---EEEe-HHHHHHHh
Confidence 34568888887777766543210 01234588999999999999999998764322 2222 11111100
Q ss_pred CC-hHHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCCh----------------hHHHHHhcccCCC-
Q 037291 214 GG-LEHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEV----------------GQLEGLIGELDQF- 275 (349)
Q Consensus 214 ~~-~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~----------------~~~~~l~~~~~~~- 275 (349)
.+ ... .+...+.......+.++++|+++.. ..+..++..+...
T Consensus 86 ~~~~~~-------------------~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 146 (257)
T 1lv7_A 86 VGVGAS-------------------RVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE 146 (257)
T ss_dssp CCCCHH-------------------HHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCC
T ss_pred hhhhHH-------------------HHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcc
Confidence 00 000 1112222333445789999998321 1223333333221
Q ss_pred -CCCcEEEEEeCChhHHH-hc-C-CCCCcEEEcCCCCHHHHHHHHHhhh
Q 037291 276 -GPGSRIVVTTRDKGVLE-KF-R-GEEKKIHRVNGLEFEEAFEHFCNFA 320 (349)
Q Consensus 276 -~~gs~IIiTtR~~~~~~-~~-~-~~~~~~~~l~~L~~~ea~~Lf~~~a 320 (349)
..+..||.||.....+. .+ . ......+.++..+.++-.+++..+.
T Consensus 147 ~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~ 195 (257)
T 1lv7_A 147 GNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHM 195 (257)
T ss_dssp SSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred cCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHH
Confidence 23456777776554221 11 1 0134578888888888888887665
No 73
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.28 E-value=1.4e-05 Score=74.00 Aligned_cols=154 Identities=18% Similarity=0.225 Sum_probs=89.2
Q ss_pred CCcccccchhhhHHHhhhhc----------CCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCC
Q 037291 145 NGLVGLNSRIEQIKPFLCMD----------LSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGG 214 (349)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~----------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 214 (349)
..+-|.+...++|.+.+... .-...+-|.++|++|+|||.||+++++.....| +............
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~f----i~v~~s~l~sk~v 257 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATF----LRIVGSELIQKYL 257 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEE----EEEESGGGCCSSS
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCE----EEEEHHHhhhccC
Confidence 45678888888887755321 122357788999999999999999999875432 2222222221111
Q ss_pred C-hHHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCCh----------------hHHHHHhcccCCC--
Q 037291 215 G-LEHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEV----------------GQLEGLIGELDQF-- 275 (349)
Q Consensus 215 ~-~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~----------------~~~~~l~~~~~~~-- 275 (349)
+ .....+.++ ...-...+++|++|+++.. ..+..++..+..+
T Consensus 258 Gesek~ir~lF-------------------~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~ 318 (437)
T 4b4t_I 258 GDGPRLCRQIF-------------------KVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDD 318 (437)
T ss_dssp SHHHHHHHHHH-------------------HHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCC
T ss_pred chHHHHHHHHH-------------------HHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCC
Confidence 1 112222222 1122345899999998622 0123343333322
Q ss_pred CCCcEEEEEeCChhHHHhcC---CCCCcEEEcCCCCHHHHHHHHHhhhc
Q 037291 276 GPGSRIVVTTRDKGVLEKFR---GEEKKIHRVNGLEFEEAFEHFCNFAF 321 (349)
Q Consensus 276 ~~gs~IIiTtR~~~~~~~~~---~~~~~~~~l~~L~~~ea~~Lf~~~a~ 321 (349)
..+..||.||...+.+...- +..+..++++..+.++-.++|..+.-
T Consensus 319 ~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~ 367 (437)
T 4b4t_I 319 RGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTS 367 (437)
T ss_dssp SSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHT
T ss_pred CCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhc
Confidence 23456777777665433321 12346788998899888999987763
No 74
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.28 E-value=6.3e-06 Score=73.84 Aligned_cols=144 Identities=10% Similarity=0.066 Sum_probs=89.2
Q ss_pred cchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhh---cCCcceEEEEeccccccCCCChHHHHHHHHHHh
Q 037291 151 NSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFT---GEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTI 227 (349)
Q Consensus 151 ~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~---~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~ 227 (349)
+..++.+...+..+ ..+...++|++|+||||+|+.+++... .......++. .+....+...+ +.+...+
T Consensus 3 ~~~~~~L~~~i~~~---~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~----~~~~~~~id~i-r~li~~~ 74 (305)
T 2gno_A 3 KDQLETLKRIIEKS---EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEID----PEGENIGIDDI-RTIKDFL 74 (305)
T ss_dssp -CHHHHHHHHHHTC---SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEEC----CSSSCBCHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHCC---CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEc----CCcCCCCHHHH-HHHHHHH
Confidence 44566677777655 267888999999999999999987531 1122233332 11102232222 2333332
Q ss_pred hcccccccCCCchHHHHHHhCCCeEEEEEeCCCCh--hHHHHHhcccCCCCCCcEEEEEeCCh-hHHHhcCCCCCcEEEc
Q 037291 228 LSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEV--GQLEGLIGELDQFGPGSRIVVTTRDK-GVLEKFRGEEKKIHRV 304 (349)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTtR~~-~~~~~~~~~~~~~~~l 304 (349)
.... ..+++-++|+|+++.. ...+.++..+....+.+.+|++|.+. .+...+. .. .+++
T Consensus 75 ~~~p---------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~--SR-~~~f 136 (305)
T 2gno_A 75 NYSP---------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIK--SR-VFRV 136 (305)
T ss_dssp TSCC---------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHH--TT-SEEE
T ss_pred hhcc---------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHH--ce-eEeC
Confidence 2110 1234678899999744 45667777776556677888777554 4444444 23 8999
Q ss_pred CCCCHHHHHHHHHhhh
Q 037291 305 NGLEFEEAFEHFCNFA 320 (349)
Q Consensus 305 ~~L~~~ea~~Lf~~~a 320 (349)
.+++.++..+.+.+..
T Consensus 137 ~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 137 VVNVPKEFRDLVKEKI 152 (305)
T ss_dssp ECCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999887765
No 75
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.27 E-value=1.4e-05 Score=74.62 Aligned_cols=153 Identities=19% Similarity=0.266 Sum_probs=83.2
Q ss_pred CCcccccchhhhHHHhhhhc----------CCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCC
Q 037291 145 NGLVGLNSRIEQIKPFLCMD----------LSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGG 214 (349)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~----------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 214 (349)
..+.|.+...++|.+.+... .-...+-+.++|++|+|||+||+++++.....| +............
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~----~~v~~~~l~~~~~ 247 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAF----IRVNGSEFVHKYL 247 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEE----EEEEGGGTCCSSC
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe----EEEecchhhcccc
Confidence 46788888888887765321 123456788999999999999999999875332 2222222211111
Q ss_pred C-hHHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCCh----------------hHHHHHhcccCCC--
Q 037291 215 G-LEHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEV----------------GQLEGLIGELDQF-- 275 (349)
Q Consensus 215 ~-~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~----------------~~~~~l~~~~~~~-- 275 (349)
+ .....+.++ ...-...++++++|+++.. ..+..++..+..+
T Consensus 248 Ge~e~~ir~lF-------------------~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~ 308 (428)
T 4b4t_K 248 GEGPRMVRDVF-------------------RLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQ 308 (428)
T ss_dssp SHHHHHHHHHH-------------------HHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCS
T ss_pred chhHHHHHHHH-------------------HHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCC
Confidence 1 111222221 1222345899999998411 0133344333322
Q ss_pred CCCcEEEEEeCChhHHHh--cC-CCCCcEEEcCCCC-HHHHHHHHHhhh
Q 037291 276 GPGSRIVVTTRDKGVLEK--FR-GEEKKIHRVNGLE-FEEAFEHFCNFA 320 (349)
Q Consensus 276 ~~gs~IIiTtR~~~~~~~--~~-~~~~~~~~l~~L~-~~ea~~Lf~~~a 320 (349)
..+..||.||...+.+.. +. +.-+..++++.++ .++-.++|..+.
T Consensus 309 ~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~ 357 (428)
T 4b4t_K 309 STNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIA 357 (428)
T ss_dssp SCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHH
T ss_pred CCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHh
Confidence 234567777765543211 11 1134567887664 455556666554
No 76
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.23 E-value=1.1e-05 Score=72.35 Aligned_cols=48 Identities=21% Similarity=0.277 Sum_probs=38.2
Q ss_pred CCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhh
Q 037291 145 NGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
..++|++..+.++.+.+..- ......|.|+|++|+|||++|+.+.+..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~-a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMV-APSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHH-CSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHH-hCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 35899999999998888764 2233456799999999999999998854
No 77
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=98.18 E-value=1.1e-05 Score=71.86 Aligned_cols=28 Identities=36% Similarity=0.615 Sum_probs=24.3
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhc
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTG 195 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~ 195 (349)
..+.+.|+|++|+|||+||+.+++....
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~~ 62 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMGI 62 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4567889999999999999999998743
No 78
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.15 E-value=9.6e-07 Score=69.94 Aligned_cols=47 Identities=15% Similarity=0.066 Sum_probs=34.5
Q ss_pred CcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhh
Q 037291 146 GLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 146 ~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
.++|++..++++.+.+..-.. ....|.|+|++|+|||++|+.+++..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~-~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK-RTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT-CSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CceeCCHHHHHHHHHHHHHhC-CCCcEEEECCCCccHHHHHHHHHHhC
Confidence 588999999988888765312 22446799999999999999987754
No 79
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.13 E-value=2.2e-05 Score=79.28 Aligned_cols=153 Identities=16% Similarity=0.215 Sum_probs=84.2
Q ss_pred CCcccccchhhhHHHhhhhcCC------CCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHH
Q 037291 145 NGLVGLNSRIEQIKPFLCMDLS------DTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEH 218 (349)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 218 (349)
..++|.+..++.+...+..... .....+.++|++|+|||+||+.+++.....-...+.+. ...........
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~-~s~~~~~~~~~-- 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRID-MSEYMEKHSTS-- 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEE-GGGGCSSCCCC--
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEe-chhcccccccc--
Confidence 4688999988888877764311 12336889999999999999999997643322233332 33322211110
Q ss_pred HHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCCh--hHHHHHhcccCC-----------CCCCcEEEEEe
Q 037291 219 LQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEV--GQLEGLIGELDQ-----------FGPGSRIVVTT 285 (349)
Q Consensus 219 l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~-----------~~~gs~IIiTt 285 (349)
...+...++. ...-+|+||+++.. +....++..+.. .....+||+||
T Consensus 568 -----------------~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tt 627 (758)
T 3pxi_A 568 -----------------GGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTS 627 (758)
T ss_dssp --------------------CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEE
T ss_pred -----------------cchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeC
Confidence 0011122222 12348999999643 333444333221 12356888888
Q ss_pred CC-----hhH----HHhcC----CCCCcEEEcCCCCHHHHHHHHHhhh
Q 037291 286 RD-----KGV----LEKFR----GEEKKIHRVNGLEFEEAFEHFCNFA 320 (349)
Q Consensus 286 R~-----~~~----~~~~~----~~~~~~~~l~~L~~~ea~~Lf~~~a 320 (349)
.. ..+ ...+. .....++.+.+|+.++..+++....
T Consensus 628 n~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 628 NVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp SSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 73 111 00010 1123689999999999888776543
No 80
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=98.11 E-value=4.9e-06 Score=75.38 Aligned_cols=47 Identities=17% Similarity=0.222 Sum_probs=39.2
Q ss_pred CCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhc
Q 037291 144 SNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTG 195 (349)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~ 195 (349)
...++|++..++.+...+... ..+.|+|++|+|||+||+.+++....
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~~-----~~vll~G~pGtGKT~la~~la~~~~~ 72 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICTG-----GHILLEGVPGLAKTLSVNTLAKTMDL 72 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHHT-----CCEEEESCCCHHHHHHHHHHHHHTTC
T ss_pred ccceeCcHHHHHHHHHHHHcC-----CeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 356899999998888777654 45789999999999999999987644
No 81
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.10 E-value=6e-05 Score=71.41 Aligned_cols=51 Identities=29% Similarity=0.275 Sum_probs=38.4
Q ss_pred CCCcccccchhhhHHHhhhhcC--CCCeeEEEEeccCccchHHHHHHHHHhhh
Q 037291 144 SNGLVGLNSRIEQIKPFLCMDL--SDTVQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~--~~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
...++|.+..++.+..++..-. ....+-+.++|++|+|||+||+.+++...
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 4679999988877665554321 22335688999999999999999998764
No 82
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.08 E-value=1.3e-05 Score=80.39 Aligned_cols=154 Identities=15% Similarity=0.202 Sum_probs=88.2
Q ss_pred CCcccccchhhhHHHhhhhc----------CCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCC
Q 037291 145 NGLVGLNSRIEQIKPFLCMD----------LSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGG 214 (349)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~----------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 214 (349)
..+.|.+..+++|.+++... .-..++-|.++|++|+|||+||+.+++..... ++..+.........
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~----~~~v~~~~l~sk~~ 279 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF----FFLINGPEIMSKLA 279 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCE----EEEEEHHHHHSSCT
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCe----EEEEEhHHhhcccc
Confidence 45788888888888765421 01235778999999999999999999876432 22222111111011
Q ss_pred ChHHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCChh-------------HHHHHhcccCCCC--CCc
Q 037291 215 GLEHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEVG-------------QLEGLIGELDQFG--PGS 279 (349)
Q Consensus 215 ~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~~-------------~~~~l~~~~~~~~--~gs 279 (349)
+-. ...+...+.......+.+|+||+++... .+..++..+..+. .+.
T Consensus 280 ges------------------e~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V 341 (806)
T 3cf2_A 280 GES------------------ESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (806)
T ss_dssp THH------------------HHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCE
T ss_pred hHH------------------HHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCE
Confidence 100 0111122333345668999999996321 1233333332222 234
Q ss_pred EEEEEeCChhHHHh-cC--CCCCcEEEcCCCCHHHHHHHHHhhh
Q 037291 280 RIVVTTRDKGVLEK-FR--GEEKKIHRVNGLEFEEAFEHFCNFA 320 (349)
Q Consensus 280 ~IIiTtR~~~~~~~-~~--~~~~~~~~l~~L~~~ea~~Lf~~~a 320 (349)
.||.||...+.+.. +. ..-...++++..+.++-.++|..+.
T Consensus 342 ~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l 385 (806)
T 3cf2_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp EEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTC
T ss_pred EEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHh
Confidence 55666665443222 11 1235678999999999999998766
No 83
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.05 E-value=3.1e-05 Score=70.24 Aligned_cols=171 Identities=16% Similarity=0.139 Sum_probs=91.5
Q ss_pred CCCcccccchhhhHHHhhhhc--CCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHH
Q 037291 144 SNGLVGLNSRIEQIKPFLCMD--LSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQK 221 (349)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~--~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 221 (349)
...++|.+..++.+...+... .......++|+|++|+||||||+.++..+...|. ... ... ......+.
T Consensus 24 l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~---~~s--g~~---~~~~~~l~- 94 (334)
T 1in4_A 24 LDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIH---VTS--GPV---LVKQGDMA- 94 (334)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEE---EEE--TTT---CCSHHHHH-
T ss_pred HHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE---EEe--chH---hcCHHHHH-
Confidence 356788887777777666532 1223467899999999999999999998743321 111 011 01111110
Q ss_pred HHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCCh--hHHHHHhcccCCCC------------------CCcEE
Q 037291 222 EMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEV--GQLEGLIGELDQFG------------------PGSRI 281 (349)
Q Consensus 222 ~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~------------------~gs~I 281 (349)
. +...+. ++-++++|+++.. ...+.+...+...+ +...+
T Consensus 95 ~--------------------~~~~~~-~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~l 153 (334)
T 1in4_A 95 A--------------------ILTSLE-RGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTL 153 (334)
T ss_dssp H--------------------HHHHCC-TTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEE
T ss_pred H--------------------HHHHcc-CCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEE
Confidence 0 011111 2346778888533 22233322211110 01122
Q ss_pred E-EEeCChhHHHhcCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCcc
Q 037291 282 V-VTTRDKGVLEKFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNPL 346 (349)
Q Consensus 282 I-iTtR~~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PL 346 (349)
+ .|++...+...+.......+.+++.+.++..+++.+.+-.... .-..+.+..|++.+.|.|-
T Consensus 154 i~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~--~~~~~~~~~ia~~~~G~~R 217 (334)
T 1in4_A 154 VGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV--EIEDAAAEMIAKRSRGTPR 217 (334)
T ss_dssp EEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC--CBCHHHHHHHHHTSTTCHH
T ss_pred EEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC--CcCHHHHHHHHHhcCCChH
Confidence 2 3444333322221112346899999999999999876632211 1123557788888888874
No 84
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.03 E-value=2.1e-05 Score=68.33 Aligned_cols=155 Identities=18% Similarity=0.189 Sum_probs=79.0
Q ss_pred CCCcccccchhhhHHHhhhhcC--------C-CCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCC
Q 037291 144 SNGLVGLNSRIEQIKPFLCMDL--------S-DTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGG 214 (349)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~--------~-~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 214 (349)
.++++|.+....++..+...-. + .-.+-+.|+|++|+|||||++.++..... ..+.+. .........
T Consensus 15 ~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~---~~i~~~-~~~~~~~~~ 90 (254)
T 1ixz_A 15 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV---PFITAS-GSDFVEMFV 90 (254)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTC---CEEEEE-HHHHHHSCT
T ss_pred HHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC---CEEEee-HHHHHHHHh
Confidence 3457777766555544332110 0 11123889999999999999999987642 222222 000000000
Q ss_pred ChHHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCCh------------h----HHHHHhcccCCCC--
Q 037291 215 GLEHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEV------------G----QLEGLIGELDQFG-- 276 (349)
Q Consensus 215 ~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~------------~----~~~~l~~~~~~~~-- 276 (349)
+. .. ..+...++......+.++++|+++.. . .+..+...+....
T Consensus 91 ~~--~~----------------~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~ 152 (254)
T 1ixz_A 91 GV--GA----------------ARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD 152 (254)
T ss_dssp TH--HH----------------HHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTT
T ss_pred hH--HH----------------HHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCC
Confidence 00 00 00111222222235689999999422 0 1223333332211
Q ss_pred CCcEEEEEeCChhHHHhc--C-CCCCcEEEcCCCCHHHHHHHHHhhh
Q 037291 277 PGSRIVVTTRDKGVLEKF--R-GEEKKIHRVNGLEFEEAFEHFCNFA 320 (349)
Q Consensus 277 ~gs~IIiTtR~~~~~~~~--~-~~~~~~~~l~~L~~~ea~~Lf~~~a 320 (349)
....++.||.....+... . ......++++..+.++-.+++..++
T Consensus 153 ~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 199 (254)
T 1ixz_A 153 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 199 (254)
T ss_dssp CCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHH
T ss_pred CCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHH
Confidence 223455666666543321 1 1135678999999998888887665
No 85
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.01 E-value=3.7e-05 Score=74.43 Aligned_cols=50 Identities=30% Similarity=0.363 Sum_probs=34.8
Q ss_pred CcccccchhhhHHHhhhhc---CCCCeeEEEEeccCccchHHHHHHHHHhhhc
Q 037291 146 GLVGLNSRIEQIKPFLCMD---LSDTVQIVGIWGMGGIGKTTLAEAIFDQFTG 195 (349)
Q Consensus 146 ~~vGr~~~~~~l~~~L~~~---~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~ 195 (349)
.++|.+.-.+.+...+... .......+.|+|++|+||||||+.++.....
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~ 134 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGR 134 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTC
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 3577766666554443221 1124568999999999999999999987743
No 86
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.95 E-value=4.3e-05 Score=67.37 Aligned_cols=157 Identities=18% Similarity=0.189 Sum_probs=81.0
Q ss_pred CCCCCcccccchhhhHHHhhhhcC--------C-CCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccC
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDL--------S-DTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSET 212 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~--------~-~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 212 (349)
...+.++|.+...+++..+...-. + .-.+-+.|+|++|+|||||++.++..... ..+.+. .......
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~---~~i~~~-~~~~~~~ 112 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV---PFITAS-GSDFVEM 112 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTC---CEEEEE-HHHHHHS
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCC---CEEEec-HHHHHHH
Confidence 334567888777666655432210 0 01123889999999999999999987642 222332 0000000
Q ss_pred CCChHHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCCh----------------hHHHHHhcccCCCC
Q 037291 213 GGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEV----------------GQLEGLIGELDQFG 276 (349)
Q Consensus 213 ~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~----------------~~~~~l~~~~~~~~ 276 (349)
..+. .. ..+...++......+.++++||++.. ..+..+...+....
T Consensus 113 ~~~~--~~----------------~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~ 174 (278)
T 1iy2_A 113 FVGV--GA----------------ARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 174 (278)
T ss_dssp TTTH--HH----------------HHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCC
T ss_pred HhhH--HH----------------HHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCC
Confidence 0000 00 00111222222345689999999421 11233333333222
Q ss_pred C--CcEEEEEeCChhHHHh--cC-CCCCcEEEcCCCCHHHHHHHHHhhh
Q 037291 277 P--GSRIVVTTRDKGVLEK--FR-GEEKKIHRVNGLEFEEAFEHFCNFA 320 (349)
Q Consensus 277 ~--gs~IIiTtR~~~~~~~--~~-~~~~~~~~l~~L~~~ea~~Lf~~~a 320 (349)
. ...++.||.....+.. .. ......++++..+.++-.+++..++
T Consensus 175 ~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 223 (278)
T 1iy2_A 175 KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 223 (278)
T ss_dssp TTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHH
T ss_pred CCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHH
Confidence 1 2345556665543221 11 1145688999999998888887665
No 87
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.95 E-value=0.00016 Score=68.88 Aligned_cols=153 Identities=17% Similarity=0.175 Sum_probs=83.8
Q ss_pred CCCCCcccccchhhhHHHhhhhcCC---------CCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccC
Q 037291 142 DSSNGLVGLNSRIEQIKPFLCMDLS---------DTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSET 212 (349)
Q Consensus 142 ~~~~~~vGr~~~~~~l~~~L~~~~~---------~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 212 (349)
.....++|.+..+.++.++...-.. .-.+-+.|+|++|+||||||+.++...... .+.+. .......
T Consensus 28 ~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~---~i~i~-g~~~~~~ 103 (499)
T 2dhr_A 28 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVP---FITAS-GSDFVEM 103 (499)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCC---EEEEE-GGGGTSS
T ss_pred CCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---EEEEe-hhHHHHh
Confidence 3456788888777666655432100 112348899999999999999999876421 22222 1111110
Q ss_pred CCChHHHHHHHHHHhhcccccccCCCchHHHHHHhC----CCeEEEEEeCCCCh----------------hHHHHHhccc
Q 037291 213 GGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERVW----RMKVLIVLDDVNEV----------------GQLEGLIGEL 272 (349)
Q Consensus 213 ~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~----~k~~LlVlDdv~~~----------------~~~~~l~~~~ 272 (349)
..+.. . ..+...+. ..+.++++|+++.. ..+..++..+
T Consensus 104 ~~g~~---~-------------------~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~L 161 (499)
T 2dhr_A 104 FVGVG---A-------------------ARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEM 161 (499)
T ss_dssp CTTHH---H-------------------HHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHG
T ss_pred hhhhH---H-------------------HHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHh
Confidence 00000 0 11222221 23579999999522 1233444433
Q ss_pred CCCC--CCcEEEEEeCChhHHHh-cC--CCCCcEEEcCCCCHHHHHHHHHhhh
Q 037291 273 DQFG--PGSRIVVTTRDKGVLEK-FR--GEEKKIHRVNGLEFEEAFEHFCNFA 320 (349)
Q Consensus 273 ~~~~--~gs~IIiTtR~~~~~~~-~~--~~~~~~~~l~~L~~~ea~~Lf~~~a 320 (349)
..+. ....++.||..+..+.. +. ......+.++..+.++-.+++..++
T Consensus 162 dg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~ 214 (499)
T 2dhr_A 162 DGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 214 (499)
T ss_dssp GGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTT
T ss_pred cccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHH
Confidence 3222 23456666666654332 11 1134688999999999889887765
No 88
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.91 E-value=1.7e-05 Score=63.12 Aligned_cols=36 Identities=25% Similarity=0.427 Sum_probs=27.3
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEE
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMS 204 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 204 (349)
...++|+|+.|+|||||++.++......-...+|+.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~ 71 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYID 71 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEc
Confidence 467899999999999999999997754311245554
No 89
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.87 E-value=4.8e-05 Score=77.13 Aligned_cols=154 Identities=15% Similarity=0.189 Sum_probs=85.6
Q ss_pred CCCcccccchhhhHHHhhhhc----------CCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCC
Q 037291 144 SNGLVGLNSRIEQIKPFLCMD----------LSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETG 213 (349)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~----------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 213 (349)
...++|.+..++++.+++... .-.....+.|+|++|+||||||+.++......| +.+. ........
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~---i~v~-~~~l~~~~ 278 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---FLIN-GPEIMSKL 278 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEE---EEEE-HHHHSSSS
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcE---EEEE-chHhhhhh
Confidence 356899999999998887541 012346789999999999999999988764322 2222 11111101
Q ss_pred CC-hHHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCCh--------h-----HHHHHhcccCCC--CC
Q 037291 214 GG-LEHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEV--------G-----QLEGLIGELDQF--GP 277 (349)
Q Consensus 214 ~~-~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~--------~-----~~~~l~~~~~~~--~~ 277 (349)
.+ ...... ..+.......+.++++|+++.. . ....+...+... ..
T Consensus 279 ~g~~~~~l~-------------------~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~ 339 (806)
T 1ypw_A 279 AGESESNLR-------------------KAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA 339 (806)
T ss_dssp TTHHHHHHH-------------------HHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTS
T ss_pred hhhHHHHHH-------------------HHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccc
Confidence 00 011111 2222222335789999999421 0 122232222221 22
Q ss_pred CcEEEEEeCChhHHHh-cCC--CCCcEEEcCCCCHHHHHHHHHhhh
Q 037291 278 GSRIVVTTRDKGVLEK-FRG--EEKKIHRVNGLEFEEAFEHFCNFA 320 (349)
Q Consensus 278 gs~IIiTtR~~~~~~~-~~~--~~~~~~~l~~L~~~ea~~Lf~~~a 320 (349)
+..+|.||.....+.. +.. .....+.+...+.++-.+++..++
T Consensus 340 ~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp CCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred cEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 4456666655432221 110 123567888899999999887665
No 90
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.79 E-value=0.00011 Score=64.58 Aligned_cols=127 Identities=17% Similarity=0.136 Sum_probs=69.3
Q ss_pred EEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHHHhCCCe
Q 037291 172 VGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMK 251 (349)
Q Consensus 172 i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~ 251 (349)
++|+|++|+||||||+.++..... ..+++. ...... .......+ .+. ..........+
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~---~~i~i~-g~~l~~--~~~~~~~~-~i~---------------~vf~~a~~~~p 104 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGL---NFISVK-GPELLN--MYVGESER-AVR---------------QVFQRAKNSAP 104 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTC---EEEEEE-TTTTCS--STTHHHHH-HHH---------------HHHHHHHHTCS
T ss_pred EEEECCCCCcHHHHHHHHHHHcCC---CEEEEE-cHHHHh--hhhhHHHH-HHH---------------HHHHHHHhcCC
Confidence 899999999999999999987543 223333 111111 01111111 011 11111112346
Q ss_pred EEEEEeCCCChh-------------HHHHHhcccCCC--CCCcEEEEEeCChhHHHhc--C-CCCCcEEEcCCCCHHHHH
Q 037291 252 VLIVLDDVNEVG-------------QLEGLIGELDQF--GPGSRIVVTTRDKGVLEKF--R-GEEKKIHRVNGLEFEEAF 313 (349)
Q Consensus 252 ~LlVlDdv~~~~-------------~~~~l~~~~~~~--~~gs~IIiTtR~~~~~~~~--~-~~~~~~~~l~~L~~~ea~ 313 (349)
.++++|+++... ....+...+... .....++.+|....++... . ..-...+.++..+.++-.
T Consensus 105 ~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~ 184 (274)
T 2x8a_A 105 CVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRL 184 (274)
T ss_dssp EEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHH
T ss_pred CeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHH
Confidence 789999986321 122233222211 2234566677766553321 1 124678899999999999
Q ss_pred HHHHhhh
Q 037291 314 EHFCNFA 320 (349)
Q Consensus 314 ~Lf~~~a 320 (349)
++|..+.
T Consensus 185 ~il~~~~ 191 (274)
T 2x8a_A 185 AILKTIT 191 (274)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 9987765
No 91
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.76 E-value=3.6e-05 Score=77.69 Aligned_cols=49 Identities=20% Similarity=0.226 Sum_probs=38.1
Q ss_pred CCcccccchhhhHHHhhhhcC------CCCeeEEEEeccCccchHHHHHHHHHhh
Q 037291 145 NGLVGLNSRIEQIKPFLCMDL------SDTVQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~~------~~~~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
..++|.+..++.+...+.... ......+.|+|++|+|||+||+.+++..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 468899888888877765431 1123478899999999999999999877
No 92
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.70 E-value=9.2e-05 Score=68.25 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=22.7
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
...+.|+|++|+|||+||+.+++...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 35678999999999999999998773
No 93
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.67 E-value=0.0002 Score=73.14 Aligned_cols=50 Identities=20% Similarity=0.279 Sum_probs=38.6
Q ss_pred CcccccchhhhHHHhhhhcC------CCCeeEEEEeccCccchHHHHHHHHHhhhc
Q 037291 146 GLVGLNSRIEQIKPFLCMDL------SDTVQIVGIWGMGGIGKTTLAEAIFDQFTG 195 (349)
Q Consensus 146 ~~vGr~~~~~~l~~~L~~~~------~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~ 195 (349)
.++|.+..++.+...+.... ......+.|+|++|+|||+||+.+++....
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~ 614 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 614 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 57899998888877775431 112357889999999999999999987643
No 94
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.63 E-value=0.00017 Score=64.59 Aligned_cols=52 Identities=19% Similarity=0.209 Sum_probs=34.8
Q ss_pred hhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhh-cCCcceEEEE
Q 037291 153 RIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFT-GEFDGSCFMS 204 (349)
Q Consensus 153 ~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~-~~f~~~~~~~ 204 (349)
.++.+.+++..........+.|+|++|+|||+||..+++... ..-..+.++.
T Consensus 136 ~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 136 AFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp HHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred HHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 344455566543112246788999999999999999999876 4433445554
No 95
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.60 E-value=0.00016 Score=60.87 Aligned_cols=34 Identities=21% Similarity=0.114 Sum_probs=26.2
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEE
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMS 204 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 204 (349)
...++.|.|++|+|||||+..++. . .-..++|+.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~--~-~~~~v~~i~ 52 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL--L-SGKKVAYVD 52 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH--H-HCSEEEEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH--H-cCCcEEEEE
Confidence 346899999999999999999988 2 223456665
No 96
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.37 E-value=0.00015 Score=72.82 Aligned_cols=154 Identities=17% Similarity=0.258 Sum_probs=77.9
Q ss_pred CCcccccchhhhHHHhhhhc----------CCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCC
Q 037291 145 NGLVGLNSRIEQIKPFLCMD----------LSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGG 214 (349)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~----------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 214 (349)
..+.|.+...++|.+.+... .-...+-+.++|++|+|||.||+++++..... |+. ++
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~-----f~~----v~---- 543 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN-----FIS----IK---- 543 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCE-----EEE----CC----
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCc-----eEE----ec----
Confidence 45667777766666654321 01224567899999999999999999976432 222 11
Q ss_pred ChHHHHHHHHHHhhcccccccCCCchHHHHHHhCCCeEEEEEeCCCChh----------------HHHHHhcccCCCCC-
Q 037291 215 GLEHLQKEMLSTILSEKLEVAGANIPHFTKERVWRMKVLIVLDDVNEVG----------------QLEGLIGELDQFGP- 277 (349)
Q Consensus 215 ~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~k~~LlVlDdv~~~~----------------~~~~l~~~~~~~~~- 277 (349)
..++++...+.. ...+...+...-...+.+|+||+++... .+..|+..+..+..
T Consensus 544 -----~~~l~s~~vGes----e~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~ 614 (806)
T 3cf2_A 544 -----GPELLTMWFGES----EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK 614 (806)
T ss_dssp -----HHHHHTTTCSSC----HHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSS
T ss_pred -----cchhhccccchH----HHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCC
Confidence 111222211111 0112122222234568999999996320 13444444443333
Q ss_pred -CcEEEEEeCChhHHHh--cC-CCCCcEEEcCCCCHHHHHHHHHhhh
Q 037291 278 -GSRIVVTTRDKGVLEK--FR-GEEKKIHRVNGLEFEEAFEHFCNFA 320 (349)
Q Consensus 278 -gs~IIiTtR~~~~~~~--~~-~~~~~~~~l~~L~~~ea~~Lf~~~a 320 (349)
+.-||.||..++.+.. +. ..-+..+.++..+.++-.++|..+.
T Consensus 615 ~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 615 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp SSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTS
T ss_pred CCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHh
Confidence 2334445554432111 11 1245788888777777778887665
No 97
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.35 E-value=0.0038 Score=50.96 Aligned_cols=24 Identities=38% Similarity=0.537 Sum_probs=21.3
Q ss_pred EEEEeccCccchHHHHHHHHHhhh
Q 037291 171 IVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 171 ~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
.++|+|+.|+|||||++.++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999988654
No 98
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.29 E-value=6.8e-05 Score=65.52 Aligned_cols=110 Identities=9% Similarity=0.103 Sum_probs=61.5
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEecc--ccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHH
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVR--RNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKE 245 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~--~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~ 245 (349)
...+++|+|+.|+|||||++.+...+...+...+++.... ........+ +...........+...+..
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~----------v~q~~~gl~~~~l~~~la~ 93 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSI----------VNQREVGEDTKSFADALRA 93 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSE----------EEEEEBTTTBSCHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCccee----------eeHHHhCCCHHHHHHHHHH
Confidence 3478999999999999999999886644334444443211 000000000 0000000011233455666
Q ss_pred HhCCCeEEEEEeCCCChhHHHHHhcccCCCCCCcEEEEEeCChhH
Q 037291 246 RVWRMKVLIVLDDVNEVGQLEGLIGELDQFGPGSRIVVTTRDKGV 290 (349)
Q Consensus 246 ~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IIiTtR~~~~ 290 (349)
.+...+=+|++|+..+.+....++... ..|..|++||.+...
T Consensus 94 aL~~~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 94 ALREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTA 135 (261)
T ss_dssp HHHHCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSSH
T ss_pred HHhhCCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcchH
Confidence 666677789999997666554444332 246678888876543
No 99
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.26 E-value=9.5e-05 Score=67.52 Aligned_cols=110 Identities=11% Similarity=0.122 Sum_probs=65.6
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhhcCCc-ceEEEEeccccccCCCChHHHHHHHHHHhhccc-ccccCCCchHHHHHH
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFTGEFD-GSCFMSDVRRNSETGGGLEHLQKEMLSTILSEK-LEVAGANIPHFTKER 246 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~-~~~~~~~~~~~~~~~ 246 (349)
..+++|.|+.|+|||||.+.+...+..... .++.+.+..+... . ... ....+. ...........+...
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~-~-~~~--------~~v~q~~~~~~~~~~~~~La~a 192 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVH-E-SKK--------CLVNQREVHRDTLGFSEALRSA 192 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC-C-CSS--------SEEEEEEBTTTBSCHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhh-h-ccc--------cceeeeeeccccCCHHHHHHHH
Confidence 358999999999999999999886644322 2333332211110 0 000 000000 001113445678888
Q ss_pred hCCCeEEEEEeCCCChhHHHHHhcccCCCCCCcEEEEEeCChhHH
Q 037291 247 VWRMKVLIVLDDVNEVGQLEGLIGELDQFGPGSRIVVTTRDKGVL 291 (349)
Q Consensus 247 l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IIiTtR~~~~~ 291 (349)
|...+=+|++|+..+.+.++.+.... ..|..+|+|+.+....
T Consensus 193 L~~~PdvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 193 LREDPDIILVGEMRDLETIRLALTAA---ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp TTSCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSHH
T ss_pred hhhCcCEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccChHH
Confidence 88899999999998777666554432 2366688888876543
No 100
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.25 E-value=0.0071 Score=54.65 Aligned_cols=162 Identities=10% Similarity=-0.007 Sum_probs=97.4
Q ss_pred hHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhh-cCCcceEEEEeccccccCCCChHHHHHHHHHHhhcccccc
Q 037291 156 QIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFT-GEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEV 234 (349)
Q Consensus 156 ~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~ 234 (349)
++...+. . .-.++..++|+.|.||++.++.+.+.+. ..|.....+. + .. ..+..++...+-.
T Consensus 8 ~l~~~l~-~--~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~-~---~~-~~~~~~l~~~~~~--------- 70 (343)
T 1jr3_D 8 QLRAQLN-E--GLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS-I---DP-NTDWNAIFSLCQA--------- 70 (343)
T ss_dssp THHHHHH-H--CCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE-C---CT-TCCHHHHHHHHHH---------
T ss_pred HHHHHHh-c--CCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE-e---cC-CCCHHHHHHHhcC---------
Confidence 3444454 2 2457888999999999999999988654 3343221121 1 11 3344444333211
Q ss_pred cCCCchHHHHHHhCCCeEEEEEeCCCC-h--hHHHHHhcccCCCCCCcEEEEEeCC-------hhHHHhcCCCCCcEEEc
Q 037291 235 AGANIPHFTKERVWRMKVLIVLDDVNE-V--GQLEGLIGELDQFGPGSRIVVTTRD-------KGVLEKFRGEEKKIHRV 304 (349)
Q Consensus 235 ~~~~~~~~~~~~l~~k~~LlVlDdv~~-~--~~~~~l~~~~~~~~~gs~IIiTtR~-------~~~~~~~~~~~~~~~~l 304 (349)
.-+.+.+-++|+|+++. . ...+.+...+....+++.+|+++.. ..+...+.. ....++.
T Consensus 71 ----------~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~s-r~~~~~~ 139 (343)
T 1jr3_D 71 ----------MSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALAN-RSVQVTC 139 (343)
T ss_dssp ----------HHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTT-TCEEEEE
T ss_pred ----------cCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHh-CceEEEe
Confidence 11234566888999865 3 4566777666655667877777643 234444321 4578999
Q ss_pred CCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHhcCCccc
Q 037291 305 NGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYAKGNPLV 347 (349)
Q Consensus 305 ~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G~PLa 347 (349)
.+++.++..+.+...+-..+-. -..+.++.+++.++|.+..
T Consensus 140 ~~l~~~~l~~~l~~~~~~~g~~--i~~~a~~~l~~~~~gdl~~ 180 (343)
T 1jr3_D 140 QTPEQAQLPRWVAARAKQLNLE--LDDAANQVLCYCYEGNLLA 180 (343)
T ss_dssp CCCCTTHHHHHHHHHHHHTTCE--ECHHHHHHHHHSSTTCHHH
T ss_pred eCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHhchHHHH
Confidence 9999999988887765332211 1124567777888876643
No 101
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.22 E-value=0.00081 Score=55.57 Aligned_cols=115 Identities=18% Similarity=0.158 Sum_probs=60.0
Q ss_pred eEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHHHhhc----------ccc-cccC--
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILS----------EKL-EVAG-- 236 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~----------~~~-~~~~-- 236 (349)
..|.|++..|.||||+|-.++-+...+=..++++.-+... . ..+-..++..+. +.- ... ....
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~-~-~~gE~~~l~~L~--v~~~~~g~gf~~~~~~~~~~~~~ 104 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGT-W-PNGERNLLEPHG--VEFQVMATGFTWETQNREADTAA 104 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCS-S-CCHHHHHHGGGT--CEEEECCTTCCCCGGGHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCC-C-CccHHHHHHhCC--cEEEEcccccccCCCCcHHHHHH
Confidence 4566777777999999999998866554455666422211 1 223333333320 000 000 0000
Q ss_pred -CCchHHHHHHhCC-CeEEEEEeCCC-----ChhHHHHHhcccCCCCCCcEEEEEeCCh
Q 037291 237 -ANIPHFTKERVWR-MKVLIVLDDVN-----EVGQLEGLIGELDQFGPGSRIVVTTRDK 288 (349)
Q Consensus 237 -~~~~~~~~~~l~~-k~~LlVlDdv~-----~~~~~~~l~~~~~~~~~gs~IIiTtR~~ 288 (349)
.......++.+.+ +-=|||||++. ..-..+.++..+..-.....||+|+|..
T Consensus 105 a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 105 CMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 1122344455544 44599999983 2222333333333324567899999975
No 102
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.21 E-value=0.00044 Score=58.61 Aligned_cols=36 Identities=17% Similarity=0.203 Sum_probs=26.8
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEE
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMS 204 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 204 (349)
..+++|.|++|+|||||++.++......-..++|+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 368899999999999999999976543223345554
No 103
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.15 E-value=0.00043 Score=61.81 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=21.4
Q ss_pred eeEEEEeccCccchHHHHHHHHHh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
.+++.|+|++|+|||+||.+++..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 356789999999999999999886
No 104
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.10 E-value=0.0016 Score=56.53 Aligned_cols=37 Identities=22% Similarity=0.245 Sum_probs=27.4
Q ss_pred hHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhh
Q 037291 156 QIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 156 ~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
-+..+|... ......+.|+|++|.|||.+|..+++.+
T Consensus 92 ~l~~~l~~~-~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 92 VFLGWATKK-FGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHTTC-STTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHhCC-CCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 355555543 2334568999999999999999999853
No 105
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.07 E-value=0.00074 Score=56.27 Aligned_cols=44 Identities=25% Similarity=0.304 Sum_probs=31.2
Q ss_pred cchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhh
Q 037291 151 NSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 151 ~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
+..++.+.+.+.........+++|.|++|+|||||++.+...+.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 4 RDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp HHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34445555444432134568999999999999999999988664
No 106
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.01 E-value=0.00033 Score=56.93 Aligned_cols=25 Identities=12% Similarity=0.271 Sum_probs=22.6
Q ss_pred eEEEEeccCccchHHHHHHHHHhhh
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
.+|.|+|++|+||||+|+.+.+++.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999999998764
No 107
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.97 E-value=0.0011 Score=55.47 Aligned_cols=83 Identities=20% Similarity=0.187 Sum_probs=47.0
Q ss_pred EEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHH----------HHhhcccccccCCCch
Q 037291 171 IVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEML----------STILSEKLEVAGANIP 240 (349)
Q Consensus 171 ~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll----------~~~~~~~~~~~~~~~~ 240 (349)
+|.|.|++|+||+|.|+.+++++. ..+++ . -+++++-+ ..........+++.+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g-----~~~is--------t---GdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~ 65 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG-----FVHIS--------T---GDILREAVQKGTPLGKKAKEYMERGELVPDDLII 65 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC-----CEEEE--------H---HHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC-----CeEEc--------H---HHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHH
Confidence 477899999999999999998752 22333 0 11222111 1111111111223344
Q ss_pred HHHHHHhCCCeEEEEEeCC-CChhHHHHHhc
Q 037291 241 HFTKERVWRMKVLIVLDDV-NEVGQLEGLIG 270 (349)
Q Consensus 241 ~~~~~~l~~k~~LlVlDdv-~~~~~~~~l~~ 270 (349)
..+.+.+..... +|||++ .+..|.+.|..
T Consensus 66 ~lv~~~l~~~~~-~ilDGfPRt~~Qa~~l~~ 95 (206)
T 3sr0_A 66 ALIEEVFPKHGN-VIFDGFPRTVKQAEALDE 95 (206)
T ss_dssp HHHHHHCCSSSC-EEEESCCCSHHHHHHHHH
T ss_pred HHHHHhhccCCc-eEecCCchhHHHHHHHHh
Confidence 666777765443 689999 56666665543
No 108
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.96 E-value=0.0085 Score=55.89 Aligned_cols=29 Identities=28% Similarity=0.282 Sum_probs=25.0
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcC
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGE 196 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 196 (349)
...++.++|++|+||||++..++..++..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~ 124 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR 124 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999999876544
No 109
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.91 E-value=0.007 Score=56.53 Aligned_cols=29 Identities=28% Similarity=0.352 Sum_probs=25.3
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcC
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGE 196 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 196 (349)
...+|.++|++|+||||++..++..++..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 46899999999999999999999876554
No 110
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.88 E-value=0.00042 Score=63.71 Aligned_cols=109 Identities=11% Similarity=0.121 Sum_probs=62.8
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcCCcceE-EEEeccccccCCCChHHHHHHHHHHhhcc-cccccCCCchHHHHH
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSC-FMSDVRRNSETGGGLEHLQKEMLSTILSE-KLEVAGANIPHFTKE 245 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~-~~~~~~~~~~~~~~~~~l~~~ll~~~~~~-~~~~~~~~~~~~~~~ 245 (349)
...+++|+|+.|+|||||++.+...+.......+ ++.+.-+... .... .+..+ ........+...+..
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~-~~~~---------~~v~Q~~~g~~~~~~~~~l~~ 204 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF-KHKK---------SIVNQREVGEDTKSFADALRA 204 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCC-CCSS---------SEEEEEEBTTTBSCSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhh-ccCc---------eEEEeeecCCCHHHHHHHHHH
Confidence 3578999999999999999999886654323333 3331110000 0000 00000 000011344567778
Q ss_pred HhCCCeEEEEEeCCCChhHHHHHhcccCCCCCCcEEEEEeCChh
Q 037291 246 RVWRMKVLIVLDDVNEVGQLEGLIGELDQFGPGSRIVVTTRDKG 289 (349)
Q Consensus 246 ~l~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IIiTtR~~~ 289 (349)
.+...+=+|++|++.+.+.+...+... ..|..++.|+....
T Consensus 205 ~L~~~pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~~ 245 (372)
T 2ewv_A 205 ALREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNT 245 (372)
T ss_dssp HTTSCCSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCCS
T ss_pred HhhhCcCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcch
Confidence 887788899999998766655444332 34666777777554
No 111
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.88 E-value=0.00055 Score=55.14 Aligned_cols=25 Identities=16% Similarity=0.151 Sum_probs=22.3
Q ss_pred eEEEEeccCccchHHHHHHHHHhhh
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
.+|+|.|++|+||||+|+.+.+++.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998764
No 112
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.86 E-value=0.028 Score=52.57 Aligned_cols=29 Identities=24% Similarity=0.261 Sum_probs=25.4
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcC
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGE 196 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 196 (349)
..++|.++|.+|+||||++..++..+...
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 46899999999999999999999877654
No 113
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.84 E-value=0.00068 Score=62.03 Aligned_cols=48 Identities=19% Similarity=0.196 Sum_probs=33.4
Q ss_pred cccccchhhhHHHhhhh------------cCCCCeeEEEEeccCccchHHHHHHHHHhhh
Q 037291 147 LVGLNSRIEQIKPFLCM------------DLSDTVQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 147 ~vGr~~~~~~l~~~L~~------------~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
++|.+..++.+...+.. ........+.|+|++|+|||++|+.+++...
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 56666666666555520 0011345688999999999999999998763
No 114
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.83 E-value=0.0014 Score=55.41 Aligned_cols=27 Identities=26% Similarity=0.454 Sum_probs=24.3
Q ss_pred CCeeEEEEeccCccchHHHHHHHHHhh
Q 037291 167 DTVQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 167 ~~~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
...++|.|.|++|+||||.|+.+++++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999999876
No 115
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.79 E-value=0.00038 Score=57.34 Aligned_cols=25 Identities=24% Similarity=0.170 Sum_probs=21.4
Q ss_pred eEEEEeccCccchHHHHHHHHHhhh
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
.++.|+|+.|+||||++..++++..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5788999999999999988877654
No 116
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.77 E-value=0.00074 Score=55.25 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=22.5
Q ss_pred eeEEEEeccCccchHHHHHHHHHhh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
.+.|.|+|++|+||||+|+.+++++
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578899999999999999999876
No 117
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.74 E-value=0.00051 Score=56.56 Aligned_cols=28 Identities=32% Similarity=0.609 Sum_probs=23.4
Q ss_pred eEEEEeccCccchHHHHHHHHHhhhcCC
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQFTGEF 197 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~~~~f 197 (349)
+.|.|+|++|+|||||++.+..+....|
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 4578999999999999999988765444
No 118
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.74 E-value=0.00086 Score=55.74 Aligned_cols=25 Identities=32% Similarity=0.380 Sum_probs=22.9
Q ss_pred eeEEEEeccCccchHHHHHHHHHhh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
...|+|.|++|+||||+++.++..+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999876
No 119
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.74 E-value=0.0013 Score=55.08 Aligned_cols=28 Identities=29% Similarity=0.451 Sum_probs=24.5
Q ss_pred CCeeEEEEeccCccchHHHHHHHHHhhh
Q 037291 167 DTVQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 167 ~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
....+++|.|++|.|||||++.+...+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3468999999999999999999988765
No 120
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.73 E-value=0.00074 Score=64.42 Aligned_cols=45 Identities=22% Similarity=0.169 Sum_probs=37.9
Q ss_pred CCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhh
Q 037291 145 NGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
..++|.+..++.+...+... ..+.|+|++|+|||+||+.+++...
T Consensus 22 ~~ivGq~~~i~~l~~al~~~-----~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG-----ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT-----CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhhHHHHHHHHHHHHHHhcC-----CeeEeecCchHHHHHHHHHHHHHHh
Confidence 45899999988888777665 5678999999999999999998763
No 121
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.71 E-value=0.0059 Score=55.33 Aligned_cols=49 Identities=16% Similarity=0.163 Sum_probs=33.4
Q ss_pred hhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhc------CCcceEEEE
Q 037291 155 EQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTG------EFDGSCFMS 204 (349)
Q Consensus 155 ~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~------~f~~~~~~~ 204 (349)
..|..+|... -....++.|+|++|+||||||..++..... .-..++|+.
T Consensus 109 ~~LD~~LgGG-l~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~ 163 (343)
T 1v5w_A 109 QEFDKLLGGG-IESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID 163 (343)
T ss_dssp HHHHHHTTSS-BCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE
T ss_pred hhHHHHhcCC-CCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 3455555422 234578999999999999999999886432 123566776
No 122
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.71 E-value=0.0008 Score=54.17 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=20.0
Q ss_pred eEEEEeccCccchHHHHHHHHHhh
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
.+|+|.|++|+||||+|+.+ .+.
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC
Confidence 47899999999999999999 543
No 123
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.70 E-value=0.0017 Score=53.24 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=23.2
Q ss_pred eEEEEeccCccchHHHHHHHHHhhhc
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQFTG 195 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~~~ 195 (349)
..|.|.|++|+||||+|+.+.+++..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46889999999999999999998754
No 124
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.68 E-value=0.001 Score=57.61 Aligned_cols=28 Identities=18% Similarity=0.330 Sum_probs=23.9
Q ss_pred CCeeEEEEeccCccchHHHHHHHHHhhh
Q 037291 167 DTVQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 167 ~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
....+|+|.|++|+||||+|+.+...+.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3467899999999999999999988654
No 125
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.68 E-value=0.0018 Score=53.82 Aligned_cols=27 Identities=30% Similarity=0.373 Sum_probs=24.4
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
...+|+|.|++|+|||||++.++..+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 458899999999999999999998775
No 126
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.64 E-value=0.0015 Score=55.39 Aligned_cols=109 Identities=14% Similarity=-0.006 Sum_probs=56.9
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHHHhhccccc--ccC-CCchHHHH
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLE--VAG-ANIPHFTK 244 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~--~~~-~~~~~~~~ 244 (349)
...++.|+|+.|+||||++..++++...+-..++++...- .. . +. .+++++++..... ... ..+...+.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~--d~-r-~~----~~i~srlG~~~~~~~~~~~~~i~~~i~ 82 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKI--DT-R-SI----RNIQSRTGTSLPSVEVESAPEILNYIM 82 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECC--CG-G-GC----SSCCCCCCCSSCCEEESSTHHHHHHHH
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEecc--Cc-h-HH----HHHHHhcCCCccccccCCHHHHHHHHH
Confidence 3578899999999999999999998765544444443110 00 0 00 1122222111000 011 12222333
Q ss_pred HHhCC-CeEEEEEeCCCC--hhHHHHHhcccCCCCCCcEEEEEeCC
Q 037291 245 ERVWR-MKVLIVLDDVNE--VGQLEGLIGELDQFGPGSRIVVTTRD 287 (349)
Q Consensus 245 ~~l~~-k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IIiTtR~ 287 (349)
+.+.+ +.-+||+|.+.. .++++.+..... .+..||+|.++
T Consensus 83 ~~~~~~~~dvViIDEaQ~l~~~~ve~l~~L~~---~gi~Vil~Gl~ 125 (223)
T 2b8t_A 83 SNSFNDETKVIGIDEVQFFDDRICEVANILAE---NGFVVIISGLD 125 (223)
T ss_dssp STTSCTTCCEEEECSGGGSCTHHHHHHHHHHH---TTCEEEEECCS
T ss_pred HHhhCCCCCEEEEecCccCcHHHHHHHHHHHh---CCCeEEEEecc
Confidence 33332 345999999953 344444432222 26789999883
No 127
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.63 E-value=0.004 Score=58.42 Aligned_cols=32 Identities=28% Similarity=0.599 Sum_probs=25.0
Q ss_pred eEEEEeccCccchHHHHHHHHHhhhcCCcceE
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSC 201 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~ 201 (349)
+.++|+|.+|+|||||+..++.....++...+
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~ 183 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQEHGGIS 183 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHHTCCCE
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhccCcEE
Confidence 46889999999999999999987654443333
No 128
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.62 E-value=0.0019 Score=57.13 Aligned_cols=29 Identities=17% Similarity=0.254 Sum_probs=25.0
Q ss_pred CCCeeEEEEeccCccchHHHHHHHHHhhh
Q 037291 166 SDTVQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 166 ~~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
.....+|+|.|++|+||||||+.+...+.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 34578999999999999999999988664
No 129
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.62 E-value=0.0011 Score=53.69 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=20.5
Q ss_pred eEEEEeccCccchHHHHHHHHH
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFD 191 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~ 191 (349)
.+|.|.|++|+||||+|+.+.+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 130
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.61 E-value=0.0012 Score=53.13 Aligned_cols=27 Identities=26% Similarity=0.337 Sum_probs=23.0
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
...+|+|.|++|+||||+|+.+++++.
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 457899999999999999999998764
No 131
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.60 E-value=0.0009 Score=54.02 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=22.3
Q ss_pred eEEEEeccCccchHHHHHHHHHhhh
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
.+|+|+|++|+|||||++.++..+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 5689999999999999999998753
No 132
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.60 E-value=0.0068 Score=53.74 Aligned_cols=35 Identities=20% Similarity=0.169 Sum_probs=26.9
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhhcCCcceEEE
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFM 203 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 203 (349)
..+++++|.+|+||||++..++..+...-..+.++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~ 132 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLV 132 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 57899999999999999999998765442333433
No 133
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.59 E-value=0.0077 Score=54.71 Aligned_cols=52 Identities=23% Similarity=0.116 Sum_probs=35.7
Q ss_pred hhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEE
Q 037291 153 RIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMS 204 (349)
Q Consensus 153 ~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 204 (349)
-...|...|....-....++.|.|++|+||||||..++......-..++|+.
T Consensus 45 G~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId 96 (356)
T 3hr8_A 45 GSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFID 96 (356)
T ss_dssp SCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 3455666664110123479999999999999999999987654434466775
No 134
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.55 E-value=0.0015 Score=53.59 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=22.7
Q ss_pred eeEEEEeccCccchHHHHHHHHHhh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
..+|.|.|++|+||||+|+.+.+.+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4688999999999999999999876
No 135
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.55 E-value=0.0087 Score=53.64 Aligned_cols=29 Identities=24% Similarity=0.365 Sum_probs=25.2
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcC
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGE 196 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 196 (349)
...+++|+|++|+||||++..++..+...
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~ 132 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAEL 132 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 46799999999999999999999876544
No 136
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.55 E-value=0.012 Score=52.98 Aligned_cols=30 Identities=20% Similarity=0.324 Sum_probs=25.4
Q ss_pred CCeeEEEEeccCccchHHHHHHHHHhhhcC
Q 037291 167 DTVQIVGIWGMGGIGKTTLAEAIFDQFTGE 196 (349)
Q Consensus 167 ~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 196 (349)
....+++|+|+.|+||||+++.++..++..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~ 156 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNH 156 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 356899999999999999999999866543
No 137
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.55 E-value=0.001 Score=60.31 Aligned_cols=49 Identities=18% Similarity=0.159 Sum_probs=34.1
Q ss_pred CCCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhh
Q 037291 143 SSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 143 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
....++|.+...+.+...+... ....+.|+|++|+|||+||+.+++...
T Consensus 22 ~f~~i~G~~~~~~~l~~~~~~~---~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 22 PFSAIVGQEDMKLALLLTAVDP---GIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CGGGSCSCHHHHHHHHHHHHCG---GGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CchhccChHHHHHHHHHHhhCC---CCceEEEECCCCccHHHHHHHHHHhCc
Confidence 3456899887555443333221 123488999999999999999998654
No 138
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.54 E-value=0.0013 Score=54.03 Aligned_cols=24 Identities=38% Similarity=0.458 Sum_probs=21.9
Q ss_pred eeEEEEeccCccchHHHHHHHHHh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
..+++|.|++|+|||||++.++..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 478999999999999999999875
No 139
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.53 E-value=0.0014 Score=53.74 Aligned_cols=26 Identities=27% Similarity=0.497 Sum_probs=23.2
Q ss_pred eEEEEeccCccchHHHHHHHHHhhhc
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQFTG 195 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~~~ 195 (349)
.+|.|.|++|+||||+++.+.+++..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 57899999999999999999997753
No 140
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.51 E-value=0.0013 Score=53.71 Aligned_cols=26 Identities=12% Similarity=0.408 Sum_probs=22.9
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
..+++|+|++|+|||||++.+.....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999988654
No 141
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.51 E-value=0.0082 Score=53.44 Aligned_cols=29 Identities=28% Similarity=0.417 Sum_probs=25.3
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcC
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGE 196 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 196 (349)
...+++|+|++|+||||++..++..+...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~ 131 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDE 131 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhc
Confidence 46799999999999999999999877644
No 142
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.51 E-value=0.0011 Score=55.17 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=22.6
Q ss_pred eeEEEEeccCccchHHHHHHHHHhh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
..+|+|.|++|+||||+|+.+...+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999876
No 143
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.50 E-value=0.0019 Score=52.27 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=23.0
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
...+++|.|++|+||||+++.+....
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 34789999999999999999998765
No 144
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.50 E-value=0.001 Score=54.20 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=22.3
Q ss_pred eeEEEEeccCccchHHHHHHHHHhh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
.+.|.|+|++|+||||+++.+++.+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4678899999999999999999875
No 145
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.50 E-value=0.0031 Score=51.58 Aligned_cols=28 Identities=32% Similarity=0.395 Sum_probs=24.5
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhc
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTG 195 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~ 195 (349)
...+|.|.|++|+||||+++.++..+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4578899999999999999999987753
No 146
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.50 E-value=0.0022 Score=55.18 Aligned_cols=26 Identities=19% Similarity=0.070 Sum_probs=23.2
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
....|+|.|++|+||||+|+.+.+++
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45788999999999999999998865
No 147
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.49 E-value=0.0016 Score=54.49 Aligned_cols=28 Identities=29% Similarity=0.432 Sum_probs=24.1
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhc
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTG 195 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~ 195 (349)
...+++|+|++|+|||||++.++.....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 3578999999999999999999987643
No 148
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.48 E-value=0.0018 Score=53.28 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=22.7
Q ss_pred eeEEEEeccCccchHHHHHHHHHhh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
..+|+|.|++|+||||+|+.+++.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999876
No 149
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.47 E-value=0.011 Score=52.68 Aligned_cols=34 Identities=9% Similarity=0.170 Sum_probs=27.1
Q ss_pred EEEEeccCccchHHHHHHHHHhhhcCC--cceEEEE
Q 037291 171 IVGIWGMGGIGKTTLAEAIFDQFTGEF--DGSCFMS 204 (349)
Q Consensus 171 ~i~I~G~~GiGKTtLa~~~~~~~~~~f--~~~~~~~ 204 (349)
++.|+|++|+||||||.+++......+ ..++|+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId 65 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD 65 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 689999999999999999988765432 3466776
No 150
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.46 E-value=0.0027 Score=51.28 Aligned_cols=29 Identities=28% Similarity=0.282 Sum_probs=24.9
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcC
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGE 196 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 196 (349)
..++++|.|.+|+|||||+..+...+...
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 45789999999999999999999887654
No 151
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.46 E-value=0.011 Score=52.91 Aligned_cols=52 Identities=17% Similarity=0.100 Sum_probs=35.4
Q ss_pred cchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEE
Q 037291 151 NSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMS 204 (349)
Q Consensus 151 ~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 204 (349)
..-+..|..++ .. -....++.|.|.+|+||||||..++......-..++|+.
T Consensus 52 ~TG~~~LD~~l-gG-l~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 52 PSGFTELDRMT-YG-YKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp CCSCHHHHHHH-SS-BCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred cCChHHHHhhc-CC-CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 33344555555 22 234578889999999999999999976654435566665
No 152
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.46 E-value=0.0013 Score=53.97 Aligned_cols=28 Identities=32% Similarity=0.609 Sum_probs=23.7
Q ss_pred eEEEEeccCccchHHHHHHHHHhhhcCC
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQFTGEF 197 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~~~~f 197 (349)
++++|.|+.|+|||||++.+.......|
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~ 29 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccc
Confidence 5789999999999999999998765443
No 153
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.43 E-value=0.0018 Score=56.13 Aligned_cols=25 Identities=28% Similarity=0.239 Sum_probs=22.1
Q ss_pred eEEEEeccCccchHHHHHHHHHhhh
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
.++.|.|++|+||||||+.++.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4688999999999999999998753
No 154
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.43 E-value=0.0013 Score=53.75 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=22.1
Q ss_pred eEEEEeccCccchHHHHHHHHHhhh
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
++|+|.|++|+||||+|+.+.+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4588999999999999999998763
No 155
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.43 E-value=0.002 Score=53.50 Aligned_cols=26 Identities=27% Similarity=0.475 Sum_probs=23.2
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
...+|+|.|++|+||||+|+.+++.+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999998864
No 156
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.43 E-value=0.0018 Score=53.86 Aligned_cols=26 Identities=35% Similarity=0.525 Sum_probs=23.3
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
...+++|.|++|+|||||++.++..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 35789999999999999999998876
No 157
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.41 E-value=0.002 Score=52.89 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=22.3
Q ss_pred eeEEEEeccCccchHHHHHHHHHhh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
..+|+|.|++|+||||+|+.+++.+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3678999999999999999998865
No 158
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.40 E-value=0.0014 Score=54.68 Aligned_cols=27 Identities=26% Similarity=0.551 Sum_probs=23.6
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
...+|+|+|++|+|||||++.+.....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 347889999999999999999988763
No 159
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.40 E-value=0.0016 Score=52.84 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=21.6
Q ss_pred EEEEeccCccchHHHHHHHHHhhh
Q 037291 171 IVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 171 ~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
.|.|.|++|+||||+|+.++.++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998763
No 160
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.40 E-value=0.0022 Score=52.32 Aligned_cols=25 Identities=32% Similarity=0.307 Sum_probs=22.4
Q ss_pred eeEEEEeccCccchHHHHHHHHHhh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
...|+|.|++|+||||+|+.+++.+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999998865
No 161
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.38 E-value=0.0019 Score=53.46 Aligned_cols=24 Identities=29% Similarity=0.548 Sum_probs=21.9
Q ss_pred EEEEeccCccchHHHHHHHHHhhh
Q 037291 171 IVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 171 ~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
.|+|.|+.|+||||+++.+++.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 588999999999999999998764
No 162
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.37 E-value=0.0023 Score=52.39 Aligned_cols=24 Identities=38% Similarity=0.371 Sum_probs=22.0
Q ss_pred eeEEEEeccCccchHHHHHHHHHh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
...|+|+|++|+||||+++.+.+.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999999999999887
No 163
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.37 E-value=0.011 Score=53.26 Aligned_cols=70 Identities=20% Similarity=0.191 Sum_probs=43.5
Q ss_pred cccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHH
Q 037291 147 LVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLS 225 (349)
Q Consensus 147 ~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 225 (349)
+.|...-+..|..++. + -....++.|.|.+|+||||||..++......=..++|++ . ..+..++...+++
T Consensus 26 ~~gi~TG~~~LD~~~g-G-l~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS----l---Ems~~ql~~Rlls 95 (338)
T 4a1f_A 26 VTGIPTGFVQLDNYTS-G-FNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS----L---EMSAEQLALRALS 95 (338)
T ss_dssp CCSBCCSCHHHHHHHC-S-BCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE----S---SSCHHHHHHHHHH
T ss_pred cCcccCCChHHHHHhc-C-CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe----C---CCCHHHHHHHHHH
Confidence 3344444555555553 2 223478889999999999999999987654333455654 1 3344555555543
No 164
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.34 E-value=0.0016 Score=53.09 Aligned_cols=26 Identities=31% Similarity=0.438 Sum_probs=18.8
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
..+|.|.|++|+||||+|+.+.+.+.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35789999999999999999988753
No 165
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.34 E-value=0.0031 Score=52.68 Aligned_cols=28 Identities=14% Similarity=0.297 Sum_probs=24.4
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhhcC
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFTGE 196 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 196 (349)
..+|+|.|++|+||||+|+.+.+.+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999987544
No 166
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.33 E-value=0.0025 Score=57.46 Aligned_cols=106 Identities=14% Similarity=0.059 Sum_probs=59.8
Q ss_pred eEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHHHhCC
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERVWR 249 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~ 249 (349)
..++|+|+.|.|||||++.+...+.. -.+.+.+.+..+... . ... ....-... ........+...+..
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~-~~g~i~i~~~~e~~~-~-~~~--------~~i~~~~g-gg~~~r~~la~aL~~ 239 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPK-EERIISIEDTEEIVF-K-HHK--------NYTQLFFG-GNITSADCLKSCLRM 239 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCT-TSCEEEEESSCCCCC-S-SCS--------SEEEEECB-TTBCHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcC-CCcEEEECCeecccc-c-cch--------hEEEEEeC-CChhHHHHHHHHhhh
Confidence 68899999999999999999876543 345666664432211 0 000 00000000 122333566777888
Q ss_pred CeEEEEEeCCCChhHHHHHhcccCCCCCCcEEEEEeCChhH
Q 037291 250 MKVLIVLDDVNEVGQLEGLIGELDQFGPGSRIVVTTRDKGV 290 (349)
Q Consensus 250 k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IIiTtR~~~~ 290 (349)
++=+|+||+..+.+.++.+ ..+.. + +..+|+||.....
T Consensus 240 ~p~ilildE~~~~e~~~~l-~~~~~-g-~~tvi~t~H~~~~ 277 (330)
T 2pt7_A 240 RPDRIILGELRSSEAYDFY-NVLCS-G-HKGTLTTLHAGSS 277 (330)
T ss_dssp CCSEEEECCCCSTHHHHHH-HHHHT-T-CCCEEEEEECSSH
T ss_pred CCCEEEEcCCChHHHHHHH-HHHhc-C-CCEEEEEEcccHH
Confidence 8889999999775544433 23221 1 2235666654444
No 167
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.33 E-value=0.0017 Score=52.31 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=22.1
Q ss_pred eEEEEeccCccchHHHHHHHHHhhh
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
.+|+|.|++|+||||+|+.+.+.+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4688999999999999999998763
No 168
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.32 E-value=0.002 Score=53.17 Aligned_cols=25 Identities=32% Similarity=0.485 Sum_probs=22.7
Q ss_pred eEEEEeccCccchHHHHHHHHHhhh
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
.+|+|.|++|+||||+|+.+++++.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 6899999999999999999998763
No 169
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.32 E-value=0.0024 Score=57.83 Aligned_cols=31 Identities=26% Similarity=0.365 Sum_probs=25.2
Q ss_pred CCeeEEEEeccCccchHHHHHHHHHhhhcCC
Q 037291 167 DTVQIVGIWGMGGIGKTTLAEAIFDQFTGEF 197 (349)
Q Consensus 167 ~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f 197 (349)
+....|.|+|++|+||||+++.++..+.-.|
T Consensus 22 g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 22 NYRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 3466789999999999999999998664433
No 170
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.31 E-value=0.0022 Score=53.21 Aligned_cols=25 Identities=28% Similarity=0.402 Sum_probs=22.3
Q ss_pred eeEEEEeccCccchHHHHHHHHHhh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
..+++|.|+.|+|||||++.++...
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3689999999999999999998764
No 171
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.31 E-value=0.0022 Score=54.26 Aligned_cols=24 Identities=33% Similarity=0.530 Sum_probs=21.7
Q ss_pred eEEEEeccCccchHHHHHHHHHhh
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
.+|+|.|++|+||||+++.+...+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998764
No 172
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.30 E-value=0.0024 Score=51.15 Aligned_cols=24 Identities=17% Similarity=0.225 Sum_probs=21.6
Q ss_pred EEEEeccCccchHHHHHHHHHhhh
Q 037291 171 IVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 171 ~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
.|+|.|++|+||||+|+.+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998763
No 173
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.30 E-value=0.0026 Score=52.74 Aligned_cols=26 Identities=27% Similarity=0.250 Sum_probs=22.9
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
...|+|.|++|+||||+|+.+.+.+.
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999998763
No 174
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.29 E-value=0.0024 Score=53.15 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=23.9
Q ss_pred eEEEEeccCccchHHHHHHHHHhhhcC
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQFTGE 196 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~~~~ 196 (349)
..|+|.|++|+||||+|+.+.+.+...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 678999999999999999999987543
No 175
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.28 E-value=0.0024 Score=53.90 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=22.9
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
...|.|.|++|+||||+|+.+++.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45789999999999999999998763
No 176
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.28 E-value=0.0026 Score=53.11 Aligned_cols=27 Identities=37% Similarity=0.445 Sum_probs=23.7
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
...+++|.|+.|+|||||++.+...+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 457899999999999999999988654
No 177
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.28 E-value=0.0025 Score=52.74 Aligned_cols=26 Identities=35% Similarity=0.381 Sum_probs=23.1
Q ss_pred CCeeEEEEeccCccchHHHHHHHHHh
Q 037291 167 DTVQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 167 ~~~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
....+|+|.|+.|+||||+++.+.+.
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34678999999999999999999875
No 178
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.27 E-value=0.0025 Score=52.18 Aligned_cols=25 Identities=32% Similarity=0.407 Sum_probs=22.7
Q ss_pred eeEEEEeccCccchHHHHHHHHHhh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
..+|+|.|++|+||||+|+.+.+.+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998875
No 179
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.26 E-value=0.0025 Score=52.90 Aligned_cols=27 Identities=19% Similarity=0.427 Sum_probs=23.6
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
..++++|+|++|+|||||++.+.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 457899999999999999999997654
No 180
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.26 E-value=0.0025 Score=52.96 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=22.5
Q ss_pred eeEEEEeccCccchHHHHHHHHHhh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
..+++|.|++|+|||||++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998865
No 181
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.25 E-value=0.0025 Score=52.26 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=20.3
Q ss_pred eEEEEeccCccchHHHHHHHHH
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFD 191 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~ 191 (349)
.+++|.|++|+|||||++.++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999986
No 182
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.24 E-value=0.0026 Score=52.19 Aligned_cols=24 Identities=29% Similarity=0.619 Sum_probs=21.9
Q ss_pred EEEEeccCccchHHHHHHHHHhhh
Q 037291 171 IVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 171 ~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
+|+|.|+.|+||||+|+.+.+++.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999774
No 183
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.23 E-value=0.003 Score=55.82 Aligned_cols=26 Identities=35% Similarity=0.452 Sum_probs=23.0
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
...+|.|.|++|+||||+|+.+..+.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45788999999999999999998865
No 184
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.22 E-value=0.0041 Score=51.70 Aligned_cols=39 Identities=15% Similarity=0.215 Sum_probs=29.1
Q ss_pred hhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhh
Q 037291 154 IEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 154 ~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
+..+..++..- .....+.|+|++|+||||+|..+++.+.
T Consensus 45 ~~~l~~~~~~i--Pkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 45 LGALKSFLKGT--PKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp HHHHHHHHHTC--TTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcC--CcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 55566666532 2234688999999999999999998764
No 185
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.17 E-value=0.0029 Score=53.09 Aligned_cols=23 Identities=35% Similarity=0.611 Sum_probs=20.7
Q ss_pred EEEEeccCccchHHHHHHHHHhh
Q 037291 171 IVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 171 ~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
.|+|.|++|+||||+|+.+++++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998865
No 186
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.17 E-value=0.0026 Score=52.88 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=20.2
Q ss_pred eEEEEeccCccchHHHHHHHHH
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFD 191 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~ 191 (349)
.+|+|.|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3689999999999999999987
No 187
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.15 E-value=0.0032 Score=54.72 Aligned_cols=26 Identities=19% Similarity=0.523 Sum_probs=23.0
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
..+|.|.|++|+||||+|+.+...+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46889999999999999999998754
No 188
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.15 E-value=0.0029 Score=52.70 Aligned_cols=26 Identities=38% Similarity=0.560 Sum_probs=22.7
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
...+|+|+|++|+||||||+.+...+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 35789999999999999999998753
No 189
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.14 E-value=0.0029 Score=52.77 Aligned_cols=28 Identities=14% Similarity=0.276 Sum_probs=24.3
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhhcC
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFTGE 196 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 196 (349)
..+|+|.|+.|+||||+|+.+.+.+...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999876543
No 190
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.12 E-value=0.0042 Score=52.98 Aligned_cols=36 Identities=17% Similarity=0.150 Sum_probs=27.9
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEE
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMS 204 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 204 (349)
..++.|.|++|+||||||.+++......-..++|+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 468899999999999999998876544434566665
No 191
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.11 E-value=0.0033 Score=51.73 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=22.3
Q ss_pred EEEEeccCccchHHHHHHHHHhhhc
Q 037291 171 IVGIWGMGGIGKTTLAEAIFDQFTG 195 (349)
Q Consensus 171 ~i~I~G~~GiGKTtLa~~~~~~~~~ 195 (349)
.|+|.|+.|+||||+++.+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5889999999999999999987643
No 192
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.10 E-value=0.0033 Score=52.02 Aligned_cols=26 Identities=27% Similarity=0.552 Sum_probs=23.3
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
...+|+|+|+.|+||||+++.+.+.+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 46889999999999999999998864
No 193
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.10 E-value=0.0069 Score=50.79 Aligned_cols=41 Identities=29% Similarity=0.285 Sum_probs=30.1
Q ss_pred hhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcC
Q 037291 153 RIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGE 196 (349)
Q Consensus 153 ~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 196 (349)
..+.+...+... ..+.++|+|.+|+|||||+..+.......
T Consensus 17 ~~~~~~~~~~~~---~~~~i~i~G~~g~GKTTl~~~l~~~~~~~ 57 (221)
T 2wsm_A 17 LAEKNREALRES---GTVAVNIMGAIGSGKTLLIERTIERIGNE 57 (221)
T ss_dssp HHHHHHHHHHHH---TCEEEEEEECTTSCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhhccc---CceEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 344444444333 56889999999999999999999876444
No 194
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.10 E-value=0.0031 Score=52.53 Aligned_cols=22 Identities=50% Similarity=0.579 Sum_probs=20.2
Q ss_pred eEEEEeccCccchHHHHHHHHH
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFD 191 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~ 191 (349)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999976
No 195
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.09 E-value=0.0032 Score=54.15 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=22.7
Q ss_pred eeEEEEeccCccchHHHHHHHHHhh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
..+++|.|++|+|||||++.+++.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999765
No 196
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.09 E-value=0.0031 Score=52.91 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=20.5
Q ss_pred EEEEeccCccchHHHHHHHHHhh
Q 037291 171 IVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 171 ~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
.|+|.|++|+||||+|+.+++++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 197
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.07 E-value=0.012 Score=52.01 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=24.0
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
...+++|+|++|+||||++..++..+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999998775
No 198
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.05 E-value=0.0024 Score=53.40 Aligned_cols=24 Identities=38% Similarity=0.644 Sum_probs=21.9
Q ss_pred EEEEeccCccchHHHHHHHHHhhh
Q 037291 171 IVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 171 ~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
+|+|.|+.|+||||+|+.+...+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999998764
No 199
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.05 E-value=0.017 Score=52.81 Aligned_cols=28 Identities=25% Similarity=0.019 Sum_probs=23.8
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhc
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTG 195 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~ 195 (349)
....++|+|++|+|||||++.+++.+..
T Consensus 173 rGQr~~IvG~sG~GKTtLl~~Iar~i~~ 200 (422)
T 3ice_A 173 RGQRGLIVAPPKAGKTMLLQNIAQSIAY 200 (422)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCCChhHHHHHHHHHHhh
Confidence 3578899999999999999999886543
No 200
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.05 E-value=0.006 Score=54.63 Aligned_cols=29 Identities=24% Similarity=0.371 Sum_probs=24.8
Q ss_pred CCCeeEEEEeccCccchHHHHHHHHHhhh
Q 037291 166 SDTVQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 166 ~~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
.....+++|.|++|+|||||++.+...+.
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34567999999999999999999987664
No 201
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.04 E-value=0.004 Score=53.84 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=23.7
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
...+|.|.|++|+||||+|+.+...+.
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 457889999999999999999988763
No 202
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.04 E-value=0.0047 Score=60.49 Aligned_cols=48 Identities=25% Similarity=0.346 Sum_probs=39.2
Q ss_pred CCCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcC
Q 037291 144 SNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGE 196 (349)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 196 (349)
...++|.+.-++.+...+... ..+.|+|++|+||||||+.++......
T Consensus 40 l~~i~G~~~~l~~l~~~i~~g-----~~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 40 IDQVIGQEHAVEVIKTAANQK-----RHVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp HHHCCSCHHHHHHHHHHHHTT-----CCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred cceEECchhhHhhccccccCC-----CEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 356889888888887777655 578999999999999999999876444
No 203
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.02 E-value=0.0067 Score=51.11 Aligned_cols=26 Identities=35% Similarity=0.402 Sum_probs=22.8
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
...+++|.|++|+|||||++.++...
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34799999999999999999998754
No 204
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.99 E-value=0.0037 Score=54.01 Aligned_cols=25 Identities=28% Similarity=0.508 Sum_probs=22.7
Q ss_pred eeEEEEeccCccchHHHHHHHHHhh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
..+|+|.|+.|+|||||++.+++++
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999765
No 205
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.99 E-value=0.0035 Score=53.13 Aligned_cols=25 Identities=32% Similarity=0.407 Sum_probs=22.3
Q ss_pred eeEEEEeccCccchHHHHHHHHHhh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
...|.|.|++|+||||+|+.+++.+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3678999999999999999998865
No 206
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.98 E-value=0.012 Score=49.56 Aligned_cols=29 Identities=31% Similarity=0.420 Sum_probs=24.5
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcC
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGE 196 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 196 (349)
....|+|+|.+|+|||||+..++......
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~ 65 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDK 65 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 46888999999999999999999875433
No 207
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.98 E-value=0.003 Score=52.48 Aligned_cols=25 Identities=32% Similarity=0.535 Sum_probs=22.0
Q ss_pred eEEEEeccCccchHHHHHHHHHhhh
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
+.++|+|++|+|||||++.+.....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5789999999999999999987653
No 208
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.97 E-value=0.0035 Score=50.70 Aligned_cols=23 Identities=35% Similarity=0.580 Sum_probs=19.7
Q ss_pred CeeEEEEeccCccchHHHHHHHH
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIF 190 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~ 190 (349)
...+++|.|++|+|||||++.++
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 34789999999999999999643
No 209
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.95 E-value=0.005 Score=49.97 Aligned_cols=26 Identities=31% Similarity=0.360 Sum_probs=23.1
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
..+|+|.|+.|+||||+++.+...+.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46789999999999999999998764
No 210
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.94 E-value=0.0041 Score=51.50 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=22.5
Q ss_pred eeEEEEeccCccchHHHHHHHHHhh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
...|+|.|+.|+||||+++.+.+.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999999876
No 211
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.94 E-value=0.0035 Score=52.91 Aligned_cols=26 Identities=31% Similarity=0.231 Sum_probs=22.8
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
...|.|.|++|+||||+|+.+++++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35688999999999999999998764
No 212
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.93 E-value=0.005 Score=52.87 Aligned_cols=26 Identities=27% Similarity=0.468 Sum_probs=23.0
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
...+|+|.|+.|+|||||++.+...+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34789999999999999999998765
No 213
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.93 E-value=0.0031 Score=55.80 Aligned_cols=27 Identities=22% Similarity=0.394 Sum_probs=20.6
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
...+|+|.|++|+||||+|+.+.+.+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 356899999999999999999988654
No 214
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.92 E-value=0.007 Score=51.49 Aligned_cols=49 Identities=14% Similarity=0.171 Sum_probs=32.4
Q ss_pred hhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhc------CCcceEEEE
Q 037291 155 EQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTG------EFDGSCFMS 204 (349)
Q Consensus 155 ~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~------~f~~~~~~~ 204 (349)
..|..+|... -....++.|.|++|+|||||++.++..... .-..++|+.
T Consensus 11 ~~LD~~l~gg-i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~ 65 (243)
T 1n0w_A 11 KELDKLLQGG-IETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID 65 (243)
T ss_dssp HHHHHHTTTS-EETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred hHHHHhhcCC-CcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEE
Confidence 3444555322 123478999999999999999999885322 124566775
No 215
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.91 E-value=0.0078 Score=53.54 Aligned_cols=29 Identities=24% Similarity=0.344 Sum_probs=24.8
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcC
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGE 196 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 196 (349)
...+++|+|++|+|||||++.++..+...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~ 129 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL 129 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 46799999999999999999999866543
No 216
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.87 E-value=0.0048 Score=51.19 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=21.9
Q ss_pred EEEEeccCccchHHHHHHHHHhhh
Q 037291 171 IVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 171 ~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
+|+|.|+.|+||||+|+.++..+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999988653
No 217
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.87 E-value=0.0057 Score=51.14 Aligned_cols=27 Identities=26% Similarity=0.292 Sum_probs=23.7
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
...+|.|.|+.|+||||+++.+...+.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 347899999999999999999998764
No 218
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.86 E-value=0.006 Score=57.05 Aligned_cols=28 Identities=21% Similarity=0.286 Sum_probs=23.7
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhhcC
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFTGE 196 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 196 (349)
.+-+.++|++|+||||+|+.++......
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l~~~ 77 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLANAP 77 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 4568899999999999999999876443
No 219
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.84 E-value=0.005 Score=55.03 Aligned_cols=28 Identities=25% Similarity=0.357 Sum_probs=24.5
Q ss_pred CCeeEEEEeccCccchHHHHHHHHHhhh
Q 037291 167 DTVQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 167 ~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
....+++|.|+.|+|||||++.+...+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 3568999999999999999999988654
No 220
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.84 E-value=0.0045 Score=51.64 Aligned_cols=26 Identities=19% Similarity=0.392 Sum_probs=22.9
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
...+++|.|+.|+|||||++.+....
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34789999999999999999998765
No 221
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.82 E-value=0.015 Score=52.96 Aligned_cols=30 Identities=37% Similarity=0.475 Sum_probs=25.4
Q ss_pred CCCeeEEEEeccCccchHHHHHHHHHhhhc
Q 037291 166 SDTVQIVGIWGMGGIGKTTLAEAIFDQFTG 195 (349)
Q Consensus 166 ~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~ 195 (349)
.....+|+|+|.+|+|||||+..++..+..
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 346789999999999999999999876543
No 222
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=95.79 E-value=0.042 Score=50.19 Aligned_cols=48 Identities=27% Similarity=0.241 Sum_probs=35.4
Q ss_pred CCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhh
Q 037291 145 NGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
..++|....+.++...+..-.... ..+.|+|.+|.||+++|+.+...-
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~~-~~vli~GesGtGKe~lAr~ih~~s 176 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKSK-APVLITGESGTGKEIVARLIHRYS 176 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSC-SCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHhhhhhhhccc-hhheEEeCCCchHHHHHHHHHHhc
Confidence 468898888888777765442223 346699999999999999887643
No 223
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.76 E-value=0.0041 Score=52.47 Aligned_cols=25 Identities=32% Similarity=0.607 Sum_probs=22.3
Q ss_pred eeEEEEeccCccchHHHHHHHHHhh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
..+++|+|+.|+|||||++.+....
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998755
No 224
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.76 E-value=0.004 Score=53.79 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=22.5
Q ss_pred eEEEEeccCccchHHHHHHHHHhhh
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
..|+|.|++|+||||+++.++..+.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999999998763
No 225
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.76 E-value=0.036 Score=53.79 Aligned_cols=34 Identities=24% Similarity=0.150 Sum_probs=26.0
Q ss_pred eEEEEeccCccchHHHHHHHHHhhhcCCcceEEE
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFM 203 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 203 (349)
+++.|+|.+|.||||++..+...+...-..+...
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ 238 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC 238 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 6888999999999999999988765443333333
No 226
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.75 E-value=0.0055 Score=51.38 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.9
Q ss_pred EEEEeccCccchHHHHHHHHHhh
Q 037291 171 IVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 171 ~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
.|+|.|++|+||||+|+.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999876
No 227
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.74 E-value=0.0057 Score=51.70 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=21.0
Q ss_pred EEEEeccCccchHHHHHHHHHhh
Q 037291 171 IVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 171 ~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
.|+|.|++|+||||+|+.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999876
No 228
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.74 E-value=0.0096 Score=53.21 Aligned_cols=36 Identities=22% Similarity=0.369 Sum_probs=27.9
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEE
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFM 203 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 203 (349)
+.++|+|+|-|||||||.+..++.-+...=..+..+
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllI 82 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQI 82 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEE
Confidence 579999999999999999999888765443333333
No 229
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.73 E-value=0.079 Score=50.48 Aligned_cols=37 Identities=8% Similarity=-0.046 Sum_probs=29.3
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcC-CcceEEEE
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGE-FDGSCFMS 204 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 204 (349)
...++.|.|.+|+||||||.+++...... =..++|+.
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s 278 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAM 278 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEE
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEe
Confidence 34788899999999999999999877654 33566665
No 230
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.73 E-value=0.0053 Score=51.87 Aligned_cols=27 Identities=19% Similarity=0.260 Sum_probs=23.7
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
...+++|.|++|+|||||++.+.....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 347899999999999999999988664
No 231
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.73 E-value=0.0059 Score=55.00 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=22.6
Q ss_pred eEEEEeccCccchHHHHHHHHHhhh
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
.+|+|.|++|+||||||+.++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999998753
No 232
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.73 E-value=0.006 Score=53.65 Aligned_cols=25 Identities=24% Similarity=0.593 Sum_probs=22.1
Q ss_pred CCeeEEEEeccCccchHHHHHHHHH
Q 037291 167 DTVQIVGIWGMGGIGKTTLAEAIFD 191 (349)
Q Consensus 167 ~~~~~i~I~G~~GiGKTtLa~~~~~ 191 (349)
....+|+|.|++|+||||+|+.+..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999983
No 233
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.73 E-value=0.0059 Score=52.02 Aligned_cols=25 Identities=20% Similarity=0.422 Sum_probs=22.6
Q ss_pred eeEEEEeccCccchHHHHHHHHHhh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
..+|+|.|++|+||||+|+.++..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3679999999999999999999876
No 234
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.71 E-value=0.01 Score=48.19 Aligned_cols=27 Identities=22% Similarity=0.428 Sum_probs=23.9
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhhc
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFTG 195 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~~ 195 (349)
.++++|.|++|+|||||+..+...+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 578999999999999999999987653
No 235
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.70 E-value=0.0059 Score=51.36 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=21.8
Q ss_pred eEEEEeccCccchHHHHHHHHHhh
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
..|.|.|++|+||||+|+.+++++
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999876
No 236
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.67 E-value=0.0071 Score=50.77 Aligned_cols=23 Identities=43% Similarity=0.459 Sum_probs=20.9
Q ss_pred eeEEEEeccCccchHHHHHHHHH
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFD 191 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~ 191 (349)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999976
No 237
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.66 E-value=0.01 Score=52.95 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=24.4
Q ss_pred CCeeEEEEeccCccchHHHHHHHHHhhh
Q 037291 167 DTVQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 167 ~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
....+++|.|+.|+|||||++.+...+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3467999999999999999999988664
No 238
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.66 E-value=0.037 Score=52.10 Aligned_cols=54 Identities=13% Similarity=0.227 Sum_probs=35.0
Q ss_pred cccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcC-CcceEEEE
Q 037291 149 GLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGE-FDGSCFMS 204 (349)
Q Consensus 149 Gr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 204 (349)
|...-+..|..++. + -....++.|.|.+|+||||||..++..+... -..++|+.
T Consensus 185 ~i~tG~~~LD~~~g-G-l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 185 GIPTGFTELDRMTS-G-FQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp SBCCSCHHHHHHHS-S-BCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCCCCcHHHHhhcC-C-CCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 33333444555442 1 2234688999999999999999999876532 23456665
No 239
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.64 E-value=0.0072 Score=51.43 Aligned_cols=26 Identities=27% Similarity=0.250 Sum_probs=22.9
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
...|.|.|++|+||||+|+.+++++.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35788999999999999999998763
No 240
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.63 E-value=0.0077 Score=48.05 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=23.3
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
...+++|.|+.|.|||||++.++..+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45789999999999999999999865
No 241
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=95.62 E-value=0.15 Score=46.88 Aligned_cols=47 Identities=21% Similarity=0.181 Sum_probs=35.7
Q ss_pred CCcccccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHh
Q 037291 145 NGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 145 ~~~vGr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
..++|....++++.+.+..-.....+ |.|+|.+|+|||++|+.+...
T Consensus 137 ~~~ig~s~~m~~l~~~i~~~a~~~~~-vli~Ge~GtGK~~lAr~ih~~ 183 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKKISCAECP-VLITGESGVGKEVVARLIHKL 183 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHHHTTCCSC-EEEECSTTSSHHHHHHHHHHH
T ss_pred hhhhhccHHhhHHHHHHHHhcCCCCC-eEEecCCCcCHHHHHHHHHHh
Confidence 45788888888887777654233344 479999999999999988764
No 242
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.62 E-value=0.037 Score=51.92 Aligned_cols=54 Identities=17% Similarity=0.133 Sum_probs=35.5
Q ss_pred cccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcC-CcceEEEE
Q 037291 149 GLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGE-FDGSCFMS 204 (349)
Q Consensus 149 Gr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 204 (349)
|...-+..|..++ .+ -....++.|.|.+|+||||||..++...... -..++|+.
T Consensus 182 ~i~tG~~~LD~~l-gG-l~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~s 236 (444)
T 2q6t_A 182 GVRTGFKELDQLI-GT-LGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYS 236 (444)
T ss_dssp -CCCSCHHHHHHH-CC-CCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred cccCCCHhhhhhc-CC-cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 3334445555555 22 2334788999999999999999999876532 23456665
No 243
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.61 E-value=0.0045 Score=52.60 Aligned_cols=25 Identities=32% Similarity=0.339 Sum_probs=16.5
Q ss_pred eeEEEEeccCccchHHHHHHHH-Hhh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIF-DQF 193 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~-~~~ 193 (349)
..+++|.|+.|+|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4689999999999999999998 654
No 244
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=95.60 E-value=0.013 Score=55.20 Aligned_cols=54 Identities=24% Similarity=0.281 Sum_probs=36.8
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhc-CCcceEEEEeccccccCCCChHHHHHHHHH
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTG-EFDGSCFMSDVRRNSETGGGLEHLQKEMLS 225 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 225 (349)
..+.++|.|.+|+|||+|+..+++.+.. +-+.++|. .+++- .....++...+..
T Consensus 164 kGqr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~-~iGER---~rEv~e~~~~~~~ 218 (498)
T 1fx0_B 164 RGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFG-GVGER---TREGNDLYMEMKE 218 (498)
T ss_dssp TTCCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEE-EESCC---SHHHHHHHHHHHH
T ss_pred cCCeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEE-EcccC---cHHHHHHHHhhhc
Confidence 4577889999999999999999997643 33555555 34332 3345566666554
No 245
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.60 E-value=0.011 Score=52.41 Aligned_cols=28 Identities=25% Similarity=0.336 Sum_probs=24.3
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhc
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTG 195 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~ 195 (349)
...+++|+|+.|+|||||++.++..+..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4579999999999999999999986543
No 246
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.59 E-value=0.0069 Score=54.18 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=22.1
Q ss_pred eEEEEeccCccchHHHHHHHHHhh
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
.+|.|+|+.|+||||||+.+++++
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 578999999999999999999865
No 247
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.59 E-value=0.0088 Score=51.07 Aligned_cols=23 Identities=35% Similarity=0.300 Sum_probs=21.1
Q ss_pred eeEEEEeccCccchHHHHHHHHH
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFD 191 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~ 191 (349)
..+++|.|++|+|||||++.++.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 47899999999999999999984
No 248
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.58 E-value=0.0053 Score=49.70 Aligned_cols=26 Identities=31% Similarity=0.392 Sum_probs=23.0
Q ss_pred eEEEEeccCccchHHHHHHHHHhhhc
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQFTG 195 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~~~ 195 (349)
.+++|+|.+|+|||||++.+...+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 57899999999999999999887654
No 249
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.56 E-value=0.0071 Score=53.71 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=22.3
Q ss_pred eeEEEEeccCccchHHHHHHHHHhh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
.++|+|.|+.|+||||||..+++++
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3678999999999999999999864
No 250
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.50 E-value=0.0069 Score=49.90 Aligned_cols=25 Identities=32% Similarity=0.359 Sum_probs=21.7
Q ss_pred eEEEEeccCccchHHHHHHHHHhhh
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
.+++|+|+.|+|||||++.++..+.
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 3588999999999999999988653
No 251
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.48 E-value=0.0069 Score=54.41 Aligned_cols=26 Identities=23% Similarity=0.452 Sum_probs=23.1
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
..+|.|.|+.|+||||||..+++++.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCC
Confidence 46899999999999999999998653
No 252
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.48 E-value=0.0096 Score=52.80 Aligned_cols=26 Identities=23% Similarity=0.206 Sum_probs=23.1
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
..++|.|.|+.|+||||||..+++++
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 35788999999999999999999864
No 253
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=95.47 E-value=0.13 Score=58.38 Aligned_cols=148 Identities=11% Similarity=0.004 Sum_probs=0.0
Q ss_pred HHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHHHhhcccccccC
Q 037291 157 IKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAG 236 (349)
Q Consensus 157 l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~ 236 (349)
+..++... +-+.++|++|+|||+||+.+...... .....+. .+. ..+...++
T Consensus 1260 l~~~l~~~-----~~vLL~GPpGtGKT~la~~~l~~~~~--~~~~~in----fsa-~ts~~~~~---------------- 1311 (2695)
T 4akg_A 1260 FYDLLNSK-----RGIILCGPPGSGKTMIMNNALRNSSL--YDVVGIN----FSK-DTTTEHIL---------------- 1311 (2695)
T ss_dssp HHHHHHHT-----CEEEEECSTTSSHHHHHHHHHHSCSS--CEEEEEE----CCT-TCCHHHHH----------------
T ss_pred HHHHHHCC-----CeEEEECCCCCCHHHHHHHHHhcCCC--CceEEEE----eec-CCCHHHHH----------------
Q ss_pred CCchHHHHHHh---------------CCCeEEEEEeCCC--------ChhHHHHHhcccCCCC------------CCcEE
Q 037291 237 ANIPHFTKERV---------------WRMKVLIVLDDVN--------EVGQLEGLIGELDQFG------------PGSRI 281 (349)
Q Consensus 237 ~~~~~~~~~~l---------------~~k~~LlVlDdv~--------~~~~~~~l~~~~~~~~------------~gs~I 281 (349)
..+...+ .+++.++++||++ ....++.+...+...+ .+..+
T Consensus 1312 ----~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~l 1387 (2695)
T 4akg_A 1312 ----SALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHI 1387 (2695)
T ss_dssp ----HHHHHHBCCEEETTTEEEEEBSSSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEE
T ss_pred ----HHHHHHhhhccccCCccccCCCCCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEE
Q ss_pred EEEeCCh----------hHHHhcCCCCCcEEEcCCCCHHHHHHHHHhhhcCCCCCCchHHHHHHHHHHHh
Q 037291 282 VVTTRDK----------GVLEKFRGEEKKIHRVNGLEFEEAFEHFCNFAFKENHCPTNLNWHSRRVVEYA 341 (349)
Q Consensus 282 IiTtR~~----------~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~ 341 (349)
|.++... .+...+. ++.++.++.++-.++|....-.--...+....++..++..+
T Consensus 1388 IaA~Npp~~gGR~~l~~rllRrf~-----vi~i~~P~~~~l~~I~~~il~~~l~~~~~v~~~~~~lv~at 1452 (2695)
T 4akg_A 1388 VGACNPPTDPGRIPMSERFTRHAA-----ILYLGYPSGKSLSQIYEIYYKAIFKLVPEFRSYTEPFARAS 1452 (2695)
T ss_dssp EEEECCTTSTTCCCCCHHHHTTEE-----EEECCCCTTTHHHHHHHHHHHHHTTSSGGGGGGHHHHHHHH
T ss_pred EEecCCCccCCCccCChhhhheee-----EEEeCCCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
No 254
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.44 E-value=0.011 Score=50.41 Aligned_cols=36 Identities=25% Similarity=0.184 Sum_probs=26.4
Q ss_pred eeEEEEeccCccchHHHHHHHHHhh-hcCCcceEEEE
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQF-TGEFDGSCFMS 204 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~-~~~f~~~~~~~ 204 (349)
..++.|.|.+|+|||+||.+++... ...-..++|+.
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s 66 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence 4688899999999999999987653 33233455554
No 255
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.39 E-value=0.026 Score=50.60 Aligned_cols=49 Identities=16% Similarity=0.230 Sum_probs=32.8
Q ss_pred hhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcC------CcceEEEE
Q 037291 155 EQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGE------FDGSCFMS 204 (349)
Q Consensus 155 ~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~------f~~~~~~~ 204 (349)
..|..+|... -....++.|+|++|+||||||.+++...... -..++|+.
T Consensus 94 ~~LD~~L~GG-l~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~ 148 (324)
T 2z43_A 94 QALDGLLAGG-IETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYID 148 (324)
T ss_dssp HHHHHHTTTS-EETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred hhHHHhcCCC-CCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 3444555322 1234689999999999999999999865322 23567776
No 256
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.37 E-value=0.012 Score=53.41 Aligned_cols=52 Identities=17% Similarity=0.130 Sum_probs=35.8
Q ss_pred chhhhHHHhhh-hcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEE
Q 037291 152 SRIEQIKPFLC-MDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMS 204 (349)
Q Consensus 152 ~~~~~l~~~L~-~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 204 (349)
.-+..|..+|. .. -....++.|.|++|+||||||.+++......-..++|+.
T Consensus 44 TG~~~LD~~Lg~GG-l~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 44 TGSISLDVALGIGG-LPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp CSCHHHHHHTSSSS-EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCHHHHHHhccCC-ccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 33445555564 22 123578999999999999999999976654434567776
No 257
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=95.35 E-value=0.058 Score=50.56 Aligned_cols=55 Identities=24% Similarity=0.334 Sum_probs=36.2
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcC-CcceEEEEeccccccCCCChHHHHHHHHHH
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGE-FDGSCFMSDVRRNSETGGGLEHLQKEMLST 226 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 226 (349)
..+.++|.|.+|+|||+|+..+++.+... -+.++|. .+++- .....++...+...
T Consensus 152 kGQr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~-~iGER---~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 152 KGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA-GVGER---TREGNDLYHEMIES 207 (482)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEE-EESCC---HHHHHHHHHHHHHH
T ss_pred cCCeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEE-ECCCc---chHHHHHHHHhhhc
Confidence 35778999999999999999999876433 3444544 33332 33455555555543
No 258
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.34 E-value=0.035 Score=52.11 Aligned_cols=54 Identities=19% Similarity=0.147 Sum_probs=35.8
Q ss_pred cccchhhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEE
Q 037291 149 GLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMS 204 (349)
Q Consensus 149 Gr~~~~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 204 (349)
|...-+..|..++. + -....++.|.|.+|+||||||..++......-..++|++
T Consensus 179 gi~TG~~~LD~~lg-G-l~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fS 232 (444)
T 3bgw_A 179 GVPSGFTELDRMTY-G-YKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 232 (444)
T ss_dssp SBCCSCHHHHHHHS-S-BCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CcCCCcHHHHhhcC-C-CCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEE
Confidence 33344445555553 2 234578889999999999999999987654423455554
No 259
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.33 E-value=0.013 Score=53.27 Aligned_cols=53 Identities=23% Similarity=0.194 Sum_probs=36.4
Q ss_pred cchhhhHHHhhh-hcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEE
Q 037291 151 NSRIEQIKPFLC-MDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMS 204 (349)
Q Consensus 151 ~~~~~~l~~~L~-~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 204 (349)
..-+..|..+|. .. -....++.|.|.+|+||||||..++......-..++|+.
T Consensus 45 ~TG~~~LD~~Lg~GG-l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 45 STGSLSLDIALGAGG-LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp CCSCHHHHHHTSSSS-EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCHHHHHHhccCC-ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 334455556664 11 123478999999999999999999987654434577776
No 260
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.32 E-value=0.0094 Score=52.70 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=21.0
Q ss_pred eEEEEeccCccchHHHHHHHHHh
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
.+|.|.|++|+||||+|+.+.++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 261
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.32 E-value=0.014 Score=51.46 Aligned_cols=37 Identities=14% Similarity=0.142 Sum_probs=28.0
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcCCc-ceEEEE
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGEFD-GSCFMS 204 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~-~~~~~~ 204 (349)
...+++|.|++|+|||||++.++..+..... .++|+.
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 3478999999999999999999987654422 344554
No 262
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.30 E-value=0.0093 Score=49.30 Aligned_cols=24 Identities=29% Similarity=0.234 Sum_probs=21.6
Q ss_pred eEEEEeccCccchHHHHHHHHHhh
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
..|.|.|++|+||||||.+++.+.
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 668899999999999999998864
No 263
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.29 E-value=0.0087 Score=55.74 Aligned_cols=26 Identities=23% Similarity=0.310 Sum_probs=23.3
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
...+|.|+|++|+||||+|+.++.+.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 46889999999999999999998765
No 264
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.28 E-value=0.016 Score=52.67 Aligned_cols=28 Identities=25% Similarity=0.336 Sum_probs=24.3
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhc
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTG 195 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~ 195 (349)
...+++|+|+.|+|||||++.++..+..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 4579999999999999999999986643
No 265
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.25 E-value=0.058 Score=45.07 Aligned_cols=110 Identities=14% Similarity=-0.011 Sum_probs=53.6
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHHHhhcccccccCCCchHHHHHHh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEVAGANIPHFTKERV 247 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~~~l 247 (349)
...+..++|.-|.||||.+...+.+....-..++.+... ... ..+- ..+.+.+........-... ..+.+.+
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~--~d~-R~ge----~~i~s~~g~~~~a~~~~~~-~~~~~~~ 98 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPC--IDN-RYSE----EDVVSHNGLKVKAVPVSAS-KDIFKHI 98 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC------------------------CCEEECSSG-GGGGGGC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEec--cCC-cchH----HHHHhhcCCeeEEeecCCH-HHHHHHH
Confidence 347888999999999999999988775554434444311 010 1111 1233433222111111111 1112222
Q ss_pred CCCeEEEEEeCCC--ChhHHHHHhcccCCCCCCcEEEEEeCCh
Q 037291 248 WRMKVLIVLDDVN--EVGQLEGLIGELDQFGPGSRIVVTTRDK 288 (349)
Q Consensus 248 ~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IIiTtR~~ 288 (349)
.++--+|++|++. +.++++.+....+ .+..||+|.++.
T Consensus 99 ~~~~dvViIDEaQF~~~~~V~~l~~l~~---~~~~Vi~~Gl~~ 138 (214)
T 2j9r_A 99 TEEMDVIAIDEVQFFDGDIVEVVQVLAN---RGYRVIVAGLDQ 138 (214)
T ss_dssp CSSCCEEEECCGGGSCTTHHHHHHHHHH---TTCEEEEEECSB
T ss_pred hcCCCEEEEECcccCCHHHHHHHHHHhh---CCCEEEEEeccc
Confidence 2333499999983 3455544433222 367899999854
No 266
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.23 E-value=0.041 Score=46.14 Aligned_cols=28 Identities=21% Similarity=0.274 Sum_probs=24.6
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhhcC
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFTGE 196 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 196 (349)
...|.|.|+.|+||||+++.+.+.+...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4678899999999999999999988654
No 267
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=95.22 E-value=0.26 Score=43.05 Aligned_cols=36 Identities=11% Similarity=0.028 Sum_probs=26.4
Q ss_pred ccHHHHHHHhhCceEEEEecCCCCCchhhHHHHHHHH
Q 037291 12 ISDALLNAIQGSKISVVIFSKDYGSSKWCLNELVKIL 48 (349)
Q Consensus 12 ~~~~i~~ai~~s~~~ivv~S~~y~~S~~cl~El~~i~ 48 (349)
...++.+.++++.+.|.|+.-.-..|..| .++.+++
T Consensus 13 a~~~~~~~l~~aDvVl~VvDAr~p~~~~~-~~l~~~l 48 (282)
T 1puj_A 13 ARREVTEKLKLIDIVYELVDARIPMSSRN-PMIEDIL 48 (282)
T ss_dssp HHHHHHHHGGGCSEEEEEEETTSTTTTSC-HHHHHHC
T ss_pred HHHHHHHHHhhCCEEEEEEeCCCCCccCC-HHHHHHH
Confidence 45788999999999999998766666655 2444443
No 268
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.19 E-value=0.019 Score=48.48 Aligned_cols=27 Identities=19% Similarity=0.010 Sum_probs=22.6
Q ss_pred eEEEEeccCccchHHHHHHHHHhhhcC
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQFTGE 196 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~~~~ 196 (349)
-.|.+.|.||+||||+|..++......
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~ 33 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQ 33 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 347789999999999999999876544
No 269
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.19 E-value=0.017 Score=50.45 Aligned_cols=27 Identities=30% Similarity=0.406 Sum_probs=23.3
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhhc
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFTG 195 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~~ 195 (349)
..++.|.|++|+|||||+..++..+..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 478999999999999999999875543
No 270
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.19 E-value=0.009 Score=50.00 Aligned_cols=23 Identities=48% Similarity=0.278 Sum_probs=20.9
Q ss_pred eEEEEeccCccchHHHHHHHHHh
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
.+++|.|+.|+|||||++.++-.
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 67899999999999999998864
No 271
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.19 E-value=0.01 Score=50.79 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=21.7
Q ss_pred CeeEEEEeccCccchHHHHHHHHHh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
. .+++|.|+.|.|||||.+.++--
T Consensus 24 ~-e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 24 R-DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp S-SEEEEECCTTSSHHHHHHHHHTS
T ss_pred C-EEEEEECCCCCCHHHHHHHHhCC
Confidence 5 78999999999999999999864
No 272
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.18 E-value=0.026 Score=48.62 Aligned_cols=27 Identities=33% Similarity=0.331 Sum_probs=23.9
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
...++.+.|.||+|||||+..++..+.
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 467888999999999999999998766
No 273
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.17 E-value=0.012 Score=47.94 Aligned_cols=25 Identities=24% Similarity=0.165 Sum_probs=21.7
Q ss_pred CeeEEEEeccCccchHHHHHHHHHh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
....|+|.|.+|+|||||+..+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4567889999999999999999864
No 274
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.16 E-value=0.013 Score=49.90 Aligned_cols=27 Identities=30% Similarity=0.341 Sum_probs=23.5
Q ss_pred CCeeEEEEeccCccchHHHHHHHHHhh
Q 037291 167 DTVQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 167 ~~~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
....+|+|.|+.|+||||+++.++..+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 346789999999999999999998765
No 275
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.13 E-value=0.0089 Score=51.04 Aligned_cols=24 Identities=33% Similarity=0.371 Sum_probs=21.3
Q ss_pred CeeEEEEeccCccchHHHHHHHHH
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFD 191 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~ 191 (349)
...+++|.|+.|+|||||.+.++-
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 347899999999999999999875
No 276
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.12 E-value=0.015 Score=49.33 Aligned_cols=28 Identities=21% Similarity=0.404 Sum_probs=24.7
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhc
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTG 195 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~ 195 (349)
....|+|.|++|+||||+++.+.+.+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3578899999999999999999998765
No 277
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.09 E-value=0.009 Score=50.61 Aligned_cols=23 Identities=35% Similarity=0.338 Sum_probs=20.9
Q ss_pred eeEEEEeccCccchHHHHHHHHH
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFD 191 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~ 191 (349)
..+++|.|+.|+|||||.+.++-
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 47899999999999999999875
No 278
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.07 E-value=0.019 Score=54.24 Aligned_cols=35 Identities=26% Similarity=0.418 Sum_probs=27.2
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEE
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFM 203 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 203 (349)
...+++|+|++|+|||||++.++..+... .+.+++
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~-~G~V~l 326 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQ-GKSVML 326 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEE
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhc-CCeEEE
Confidence 45799999999999999999999876533 334444
No 279
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=94.99 E-value=0.081 Score=46.93 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=20.0
Q ss_pred eEEEEeccCccchHHHHHHHHHh
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
.+++|.|++|+|||||.+.+...
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-
T ss_pred CEEEEECCCCCCHHHHHHHhccc
Confidence 58899999999999999998653
No 280
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.99 E-value=0.014 Score=53.67 Aligned_cols=24 Identities=29% Similarity=0.595 Sum_probs=22.0
Q ss_pred eEEEEeccCccchHHHHHHHHHhh
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
.+|+|.|+.|+||||||..++..+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 578999999999999999999865
No 281
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.96 E-value=0.013 Score=54.69 Aligned_cols=28 Identities=25% Similarity=0.336 Sum_probs=24.1
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhc
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTG 195 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~ 195 (349)
...+|.|+|++|+||||++..++..+..
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~ 125 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQK 125 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3578999999999999999999987653
No 282
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.95 E-value=0.011 Score=50.59 Aligned_cols=26 Identities=27% Similarity=0.480 Sum_probs=22.4
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
...+++|.|+.|+|||||++.++.-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34789999999999999999998643
No 283
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.94 E-value=0.025 Score=50.01 Aligned_cols=29 Identities=28% Similarity=0.351 Sum_probs=24.8
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcC
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGE 196 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 196 (349)
...+++|+|.+|+||||++..++..+...
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~ 125 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 35789999999999999999999876544
No 284
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=94.93 E-value=0.027 Score=48.80 Aligned_cols=34 Identities=26% Similarity=0.413 Sum_probs=26.0
Q ss_pred eEEEEeccCccchHHHHHHHHHhhhcCCcceEEE
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFM 203 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 203 (349)
++|+|.|-||+||||+|..++..+...-..++.+
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~Vlli 35 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVV 35 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEE
Confidence 5677889999999999999998776543334444
No 285
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=94.92 E-value=0.02 Score=52.46 Aligned_cols=27 Identities=30% Similarity=0.196 Sum_probs=23.4
Q ss_pred CCeeEEEEeccCccchHHHHHHHHHhh
Q 037291 167 DTVQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 167 ~~~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
.....++|+|++|+|||||++.++...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 345789999999999999999999754
No 286
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=94.90 E-value=0.071 Score=48.69 Aligned_cols=28 Identities=25% Similarity=0.093 Sum_probs=23.8
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhc
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTG 195 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~ 195 (349)
..+.++|.|.+|+|||+|+..+++.+..
T Consensus 174 rGQR~lIfg~~g~GKT~Ll~~Ia~~i~~ 201 (427)
T 3l0o_A 174 KGQRGMIVAPPKAGKTTILKEIANGIAE 201 (427)
T ss_dssp TTCEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCChhHHHHHHHHHHhh
Confidence 3567889999999999999999987643
No 287
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.89 E-value=0.014 Score=50.37 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=21.6
Q ss_pred eeEEEEeccCccchHHHHHHHHHh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
..+++|.|+.|.|||||.+.++--
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 478999999999999999999874
No 288
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.89 E-value=0.02 Score=54.57 Aligned_cols=28 Identities=11% Similarity=0.065 Sum_probs=24.8
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhc
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTG 195 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~ 195 (349)
...+|.+.|++|+||||+|+.+++++..
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 3478899999999999999999998863
No 289
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.88 E-value=0.014 Score=47.72 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=21.4
Q ss_pred eeEEEEeccCccchHHHHHHHHHh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
...++|.|.+|+|||||++.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 467899999999999999999874
No 290
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.88 E-value=0.017 Score=45.27 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.4
Q ss_pred eEEEEeccCccchHHHHHHHHHh
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
+.|+|.|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999864
No 291
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.87 E-value=0.016 Score=49.49 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=23.1
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
...|.|.|..|+||||+++.+++.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 36789999999999999999998764
No 292
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.87 E-value=0.012 Score=51.23 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=21.8
Q ss_pred CeeEEEEeccCccchHHHHHHHHHh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
...+++|.|+.|+|||||.+.++--
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3478999999999999999999753
No 293
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.84 E-value=0.012 Score=51.56 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.9
Q ss_pred eeEEEEeccCccchHHHHHHHHH
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFD 191 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~ 191 (349)
..+++|.|+.|+|||||++.++-
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 47899999999999999999875
No 294
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.82 E-value=0.028 Score=49.83 Aligned_cols=36 Identities=22% Similarity=0.369 Sum_probs=27.6
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEE
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFM 203 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 203 (349)
..++|+|+|-||+||||+|..++..+...=..++.+
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~Vlli 75 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQI 75 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 568888889999999999999998776542233333
No 295
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.81 E-value=0.015 Score=50.72 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=22.0
Q ss_pred CeeEEEEeccCccchHHHHHHHHHh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
...+++|.|+.|+|||||++.++--
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3478999999999999999999874
No 296
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.79 E-value=0.013 Score=50.27 Aligned_cols=23 Identities=48% Similarity=0.515 Sum_probs=20.9
Q ss_pred eeEEEEeccCccchHHHHHHHHH
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFD 191 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~ 191 (349)
..+++|.|+.|.|||||.+.++-
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999975
No 297
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.77 E-value=0.015 Score=49.96 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=21.5
Q ss_pred CeeEEEEeccCccchHHHHHHHHH
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFD 191 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~ 191 (349)
...+++|.|+.|.|||||.+.++-
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 347899999999999999999975
No 298
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.77 E-value=0.013 Score=50.81 Aligned_cols=23 Identities=35% Similarity=0.404 Sum_probs=21.0
Q ss_pred eeEEEEeccCccchHHHHHHHHH
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFD 191 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~ 191 (349)
..+++|.|+.|+|||||.+.++-
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 47899999999999999999975
No 299
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.77 E-value=0.013 Score=51.10 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=21.1
Q ss_pred eeEEEEeccCccchHHHHHHHHH
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFD 191 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~ 191 (349)
..+++|.|+.|.|||||++.++-
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 47899999999999999999975
No 300
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.77 E-value=0.015 Score=52.71 Aligned_cols=26 Identities=35% Similarity=0.402 Sum_probs=23.5
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
...++.|+|++|+|||||+..++...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45899999999999999999999865
No 301
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.76 E-value=0.044 Score=46.25 Aligned_cols=28 Identities=21% Similarity=0.338 Sum_probs=24.8
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhc
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTG 195 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~ 195 (349)
....|.|.|+.|+||||+++.+.+.+..
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4578899999999999999999998764
No 302
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.75 E-value=0.016 Score=58.69 Aligned_cols=53 Identities=23% Similarity=0.261 Sum_probs=38.5
Q ss_pred CCCcccccchhhhHHHhhhhc----------CCCCeeEEEEeccCccchHHHHHHHHHhhhcC
Q 037291 144 SNGLVGLNSRIEQIKPFLCMD----------LSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGE 196 (349)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~----------~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 196 (349)
...++|.+...+.+.+.+... .-.....+.|+|++|+|||+||+.++......
T Consensus 476 ~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~ 538 (806)
T 1ypw_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN 538 (806)
T ss_dssp SCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCC
T ss_pred ccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCC
Confidence 356778888777777766421 01234568899999999999999999987544
No 303
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=94.74 E-value=0.017 Score=53.81 Aligned_cols=89 Identities=17% Similarity=0.134 Sum_probs=48.7
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhhcCCc---ceEEEEeccccccCCCChHHHHHHHHHHhhccc-cc---ccCCCc--
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFTGEFD---GSCFMSDVRRNSETGGGLEHLQKEMLSTILSEK-LE---VAGANI-- 239 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~---~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~-~~---~~~~~~-- 239 (349)
.+.++|.|.+|+|||+|+.++++....+.+ .++.+..+++- .....++...+...-.... .- ..++-.
T Consensus 151 GQr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR---~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~ 227 (465)
T 3vr4_D 151 GQKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGIT---FEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIE 227 (465)
T ss_dssp TCBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEEC---HHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHH
T ss_pred CCEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCC---cHHHHHHHHHHhhcCCccceEEEEECCCCCHHH
Confidence 355789999999999999999887654222 23333333332 3344555555443311110 00 011111
Q ss_pred -------hHHHHHHhC---CCeEEEEEeCCC
Q 037291 240 -------PHFTKERVW---RMKVLIVLDDVN 260 (349)
Q Consensus 240 -------~~~~~~~l~---~k~~LlVlDdv~ 260 (349)
.-.+.++++ ++.+||++||+.
T Consensus 228 r~~a~~~a~tiAEyfrd~~G~~VLl~~DslT 258 (465)
T 3vr4_D 228 RIATPRMALTAAEYLAYEKGMHVLVIMTDMT 258 (465)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 112344443 689999999984
No 304
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.72 E-value=0.017 Score=51.33 Aligned_cols=26 Identities=15% Similarity=0.293 Sum_probs=22.8
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
...+++|+|+.|.|||||++.+..-+
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 45789999999999999999998654
No 305
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.71 E-value=0.013 Score=50.33 Aligned_cols=24 Identities=38% Similarity=0.551 Sum_probs=21.3
Q ss_pred eeEEEEeccCccchHHHHHHHHHh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
..+++|.|+.|+|||||++.++--
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 478999999999999999998753
No 306
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.70 E-value=0.014 Score=50.74 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=21.8
Q ss_pred CeeEEEEeccCccchHHHHHHHHHh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
...+++|.|+.|+|||||.+.++--
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcC
Confidence 3478999999999999999998753
No 307
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.70 E-value=0.014 Score=49.64 Aligned_cols=25 Identities=32% Similarity=0.497 Sum_probs=22.1
Q ss_pred eeEEEEeccCccchHHHHHHHHHhh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
..+++|.|+.|.|||||.+.++-..
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999999999999998654
No 308
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.70 E-value=0.019 Score=45.63 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=20.1
Q ss_pred eEEEEeccCccchHHHHHHHHH
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFD 191 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~ 191 (349)
..|+|.|.+|+|||||...+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5688999999999999999986
No 309
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.69 E-value=0.016 Score=49.99 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=21.9
Q ss_pred eeEEEEeccCccchHHHHHHHHHhh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
..+++|.|+.|.|||||.+.++--.
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4689999999999999999987644
No 310
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.68 E-value=0.011 Score=49.60 Aligned_cols=24 Identities=42% Similarity=0.537 Sum_probs=21.2
Q ss_pred eeEEEEeccCccchHHHHHHHHHh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
..+++|.|+.|.|||||.+.++--
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 368899999999999999998764
No 311
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.67 E-value=0.051 Score=48.53 Aligned_cols=39 Identities=15% Similarity=0.195 Sum_probs=27.7
Q ss_pred hhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhh
Q 037291 154 IEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 154 ~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
...|..+|... -....++.|+|++|+|||+||.+++...
T Consensus 84 ~~~LD~~l~GG-l~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 84 SSELDSVLGGG-LESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp CHHHHHHTTSS-EETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred ChhHHHhcCCC-ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 33445555321 1235789999999999999999998753
No 312
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.66 E-value=0.018 Score=47.30 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=21.1
Q ss_pred eeEEEEeccCccchHHHHHHHHHh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
...++|.|.+|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456889999999999999999874
No 313
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.64 E-value=0.031 Score=53.52 Aligned_cols=30 Identities=13% Similarity=0.143 Sum_probs=25.0
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcCC
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGEF 197 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f 197 (349)
...+|.++|++|.||||+|+.+++.+...|
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~ 63 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIG 63 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 357889999999999999999998764333
No 314
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.63 E-value=0.026 Score=51.54 Aligned_cols=53 Identities=26% Similarity=0.182 Sum_probs=36.4
Q ss_pred cchhhhHHHhhh-hcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEE
Q 037291 151 NSRIEQIKPFLC-MDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMS 204 (349)
Q Consensus 151 ~~~~~~l~~~L~-~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 204 (349)
..-+..|..+|. .. -....++.|+|.+|+||||||..++......-..++|+.
T Consensus 56 ~TG~~~LD~~Lg~GG-l~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~ 109 (366)
T 1xp8_A 56 STGSLSLDLALGVGG-IPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID 109 (366)
T ss_dssp CCSCHHHHHHTSSSS-EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCHHHHHHhCCCC-ccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 334555666664 11 123468889999999999999999887654434577776
No 315
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.63 E-value=0.041 Score=46.57 Aligned_cols=28 Identities=25% Similarity=0.367 Sum_probs=21.5
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhhcC
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFTGE 196 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 196 (349)
...|.|.|+.|+||||+++.+++.+...
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 4678899999999999999999987653
No 316
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=94.63 E-value=0.02 Score=47.58 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=23.1
Q ss_pred eEEEEeccCccchHHHHHHHHHhhh
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
.+|.|.|+.|+||||+++.+++++.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 6899999999999999999999764
No 317
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.62 E-value=0.015 Score=50.40 Aligned_cols=25 Identities=36% Similarity=0.426 Sum_probs=21.8
Q ss_pred CeeEEEEeccCccchHHHHHHHHHh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
...+++|.|+.|.|||||.+.++--
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3478999999999999999999753
No 318
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=94.60 E-value=0.033 Score=48.87 Aligned_cols=27 Identities=30% Similarity=0.585 Sum_probs=23.3
Q ss_pred eEEEEeccCccchHHHHHHHHHhhhcC
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQFTGE 196 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~~~~ 196 (349)
++|+|+|-||+||||+|..++..+...
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~ 29 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEM 29 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHC
Confidence 678889999999999999999877544
No 319
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.60 E-value=0.015 Score=50.38 Aligned_cols=25 Identities=24% Similarity=0.466 Sum_probs=21.9
Q ss_pred eeEEEEeccCccchHHHHHHHHHhh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
..+++|.|+.|+|||||++.++--+
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 4789999999999999999997643
No 320
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.59 E-value=0.015 Score=50.80 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=21.8
Q ss_pred CeeEEEEeccCccchHHHHHHHHHh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
...+++|.|+.|+|||||++.++--
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3478999999999999999999753
No 321
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.56 E-value=0.015 Score=47.27 Aligned_cols=21 Identities=38% Similarity=0.472 Sum_probs=19.0
Q ss_pred EEEEeccCccchHHHHHHHHH
Q 037291 171 IVGIWGMGGIGKTTLAEAIFD 191 (349)
Q Consensus 171 ~i~I~G~~GiGKTtLa~~~~~ 191 (349)
-|+|.|.+|+|||||++.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 477999999999999999876
No 322
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=94.54 E-value=0.07 Score=44.05 Aligned_cols=34 Identities=15% Similarity=0.188 Sum_probs=26.8
Q ss_pred EEEEeccCccchHHHHHHHHHhhhcCCcceEEEE
Q 037291 171 IVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMS 204 (349)
Q Consensus 171 ~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 204 (349)
.|+|-|.-|+||||.++.+++.+...-..+.+..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 4678899999999999999998876544444444
No 323
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.54 E-value=0.056 Score=46.04 Aligned_cols=36 Identities=19% Similarity=0.334 Sum_probs=27.7
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhhcC-CcceEEEE
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFTGE-FDGSCFMS 204 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~~ 204 (349)
...|.|.|+.|+||||+++.+.+.+... +..+....
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~r 63 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTR 63 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeec
Confidence 4688999999999999999999987544 44244443
No 324
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=94.53 E-value=0.037 Score=46.05 Aligned_cols=29 Identities=24% Similarity=0.551 Sum_probs=25.0
Q ss_pred eEEEEeccCccchHHHHHHHHHhhhcCCc
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQFTGEFD 198 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~~~~f~ 198 (349)
..|+|-|.-|+||||+++.+++.+...+.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~ 31 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYD 31 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSC
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCC
Confidence 56889999999999999999998865554
No 325
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.52 E-value=0.017 Score=48.29 Aligned_cols=24 Identities=21% Similarity=0.356 Sum_probs=21.4
Q ss_pred eEEEEeccCccchHHHHHHHHHhh
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
.+|+|.|+.|+||||+++.+...+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 468999999999999999998764
No 326
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.51 E-value=0.059 Score=48.57 Aligned_cols=28 Identities=36% Similarity=0.481 Sum_probs=24.0
Q ss_pred CCeeEEEEeccCccchHHHHHHHHHhhh
Q 037291 167 DTVQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 167 ~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
....+++|.|++|+|||||.+.+.....
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~ 80 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLT 80 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 3568999999999999999999987543
No 327
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.51 E-value=0.055 Score=48.85 Aligned_cols=28 Identities=29% Similarity=0.335 Sum_probs=24.1
Q ss_pred CCeeEEEEeccCccchHHHHHHHHHhhh
Q 037291 167 DTVQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 167 ~~~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
....+++|.|.+|+|||||+..++....
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4568899999999999999999987554
No 328
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=94.50 E-value=0.064 Score=48.00 Aligned_cols=28 Identities=36% Similarity=0.401 Sum_probs=23.1
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhhcC
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFTGE 196 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 196 (349)
..++...|.||+||||+|..++..+...
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~ 41 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARS 41 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHC
Confidence 4666777999999999999999876554
No 329
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.50 E-value=0.016 Score=50.43 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=21.7
Q ss_pred CeeEEEEeccCccchHHHHHHHHHh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
...+++|.|+.|.|||||.+.++--
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3478999999999999999998753
No 330
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.49 E-value=0.023 Score=48.15 Aligned_cols=25 Identities=32% Similarity=0.356 Sum_probs=21.7
Q ss_pred eeEEEEeccCccchHHHHHHHHHhh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
.-.++|.|++|+||||+|+.+++++
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHHHh
Confidence 3468999999999999999999876
No 331
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.49 E-value=0.016 Score=50.80 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=21.3
Q ss_pred eeEEEEeccCccchHHHHHHHHHh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
..+++|.|+.|+|||||.+.++--
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 468999999999999999999753
No 332
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.48 E-value=0.064 Score=44.90 Aligned_cols=34 Identities=24% Similarity=0.379 Sum_probs=26.4
Q ss_pred eEEEEeccCccchHHHHHHHHHhhhcC-CcceEEE
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQFTGE-FDGSCFM 203 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~~~~-f~~~~~~ 203 (349)
..|.|.|+.|+||||+++.+++.+... +..+.+.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~ 38 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFT 38 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceee
Confidence 578899999999999999999987544 3233444
No 333
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.48 E-value=0.017 Score=49.92 Aligned_cols=25 Identities=28% Similarity=0.518 Sum_probs=21.8
Q ss_pred eeEEEEeccCccchHHHHHHHHHhh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
..+++|.|+.|.|||||.+.++--.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999998643
No 334
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.48 E-value=0.036 Score=60.80 Aligned_cols=50 Identities=24% Similarity=0.198 Sum_probs=34.9
Q ss_pred hhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEE
Q 037291 155 EQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMS 204 (349)
Q Consensus 155 ~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 204 (349)
..|..+|.-..-...+.+.|+|++|+|||+||.+++.....+=..+.|+.
T Consensus 1413 ~~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~ 1462 (2050)
T 3cmu_A 1413 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 1462 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred HHHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 34555554110123578999999999999999999987665544567775
No 335
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=94.45 E-value=0.018 Score=53.32 Aligned_cols=34 Identities=24% Similarity=0.247 Sum_probs=25.8
Q ss_pred HHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHH
Q 037291 157 IKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFD 191 (349)
Q Consensus 157 l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~ 191 (349)
+.+.|... .....+++|.|+.|+|||||.+.+..
T Consensus 58 i~~~L~~~-~~~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 58 ISDALKEI-DSSVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp HHHHHHHH-HHCCEEEEEEECTTSSHHHHHHHHHT
T ss_pred hhhhhhhc-ccCCeEEEEECCCCCcHHHHHHHHhC
Confidence 44444433 23457999999999999999999986
No 336
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=94.43 E-value=0.056 Score=48.94 Aligned_cols=27 Identities=30% Similarity=0.502 Sum_probs=23.9
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
..+++.+.|.||+||||+|..++..+.
T Consensus 17 ~~~i~~~~gkGGvGKTt~a~~lA~~la 43 (348)
T 3io3_A 17 SLKWIFVGGKGGVGKTTTSSSVAVQLA 43 (348)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHH
Confidence 568889999999999999999988766
No 337
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.42 E-value=0.02 Score=49.94 Aligned_cols=23 Identities=30% Similarity=0.580 Sum_probs=20.4
Q ss_pred eEEEEeccCccchHHHHHHHHHh
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
-.++|.|+.|+|||||.+.++..
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 35889999999999999999864
No 338
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.40 E-value=0.028 Score=44.68 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=20.7
Q ss_pred eeEEEEeccCccchHHHHHHHHHh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
...|+|.|.+|+|||||+..+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 456889999999999999998763
No 339
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.39 E-value=0.026 Score=45.68 Aligned_cols=24 Identities=21% Similarity=0.356 Sum_probs=21.1
Q ss_pred eeEEEEeccCccchHHHHHHHHHh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
...|+|.|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457889999999999999999863
No 340
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.38 E-value=0.017 Score=49.04 Aligned_cols=25 Identities=32% Similarity=0.109 Sum_probs=22.3
Q ss_pred CeeEEEEeccCccchHHHHHHHHHh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
...+|+|.|+.|+|||||++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4579999999999999999998775
No 341
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=94.33 E-value=0.064 Score=48.23 Aligned_cols=29 Identities=28% Similarity=0.383 Sum_probs=24.6
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcC
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGE 196 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 196 (349)
..+++.+.|-||+||||+|..++..+...
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~~la~~ 43 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAIQLAKV 43 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHTTS
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHhC
Confidence 46788889999999999999999876554
No 342
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=94.32 E-value=0.063 Score=54.96 Aligned_cols=23 Identities=22% Similarity=-0.047 Sum_probs=20.6
Q ss_pred CeeEEEEeccCccchHHHHHHHH
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIF 190 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~ 190 (349)
...+++|.|+.|.||||+.+.++
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999884
No 343
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.31 E-value=0.022 Score=44.64 Aligned_cols=22 Identities=27% Similarity=0.578 Sum_probs=19.6
Q ss_pred EEEEeccCccchHHHHHHHHHh
Q 037291 171 IVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 171 ~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
.|++.|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999864
No 344
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.28 E-value=0.028 Score=45.24 Aligned_cols=23 Identities=39% Similarity=0.427 Sum_probs=20.7
Q ss_pred eEEEEeccCccchHHHHHHHHHh
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
.-+.|.|.+|+||||||.++..+
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 56789999999999999999884
No 345
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=94.25 E-value=0.042 Score=46.71 Aligned_cols=32 Identities=28% Similarity=0.586 Sum_probs=24.5
Q ss_pred EEEeccCccchHHHHHHHHHhhhcCCcceEEE
Q 037291 172 VGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFM 203 (349)
Q Consensus 172 i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~ 203 (349)
|+|.|-||+||||+|..++..+...-..++.+
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~Vlli 34 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAV 34 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 56699999999999999999876553334444
No 346
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.25 E-value=0.02 Score=52.93 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=26.9
Q ss_pred hhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHh
Q 037291 154 IEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 154 ~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
+..|..+|... -....++.|.|++|+|||||+..++-.
T Consensus 164 ~~~LD~lLgGG-I~~Gei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 164 SKNLDTLLGGG-VETGSITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp CHHHHHHTTTS-EETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred ChhHHHHhcCC-cCCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 44455555322 123478999999999999999987643
No 347
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.25 E-value=0.022 Score=51.73 Aligned_cols=23 Identities=39% Similarity=0.466 Sum_probs=21.1
Q ss_pred eeEEEEeccCccchHHHHHHHHH
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFD 191 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~ 191 (349)
..+++|.|+.|+|||||.+.++-
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCchHHHHHHHHhc
Confidence 47899999999999999999985
No 348
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=94.22 E-value=0.099 Score=45.25 Aligned_cols=29 Identities=3% Similarity=-0.094 Sum_probs=23.5
Q ss_pred ccHHHHHHHhhCceEEEEecCCCCCchhh
Q 037291 12 ISDALLNAIQGSKISVVIFSKDYGSSKWC 40 (349)
Q Consensus 12 ~~~~i~~ai~~s~~~ivv~S~~y~~S~~c 40 (349)
...++.+.++++++.|.|++-.-..+..|
T Consensus 11 a~~~~~~~l~~~D~vl~VvDar~P~~~~~ 39 (262)
T 3cnl_A 11 AKRQIKDLLRLVNTVVEVRDARAPFATSA 39 (262)
T ss_dssp TTHHHHHHHTTCSEEEEEEETTSTTTTSC
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCCcCcC
Confidence 45789999999999999998766655555
No 349
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=94.21 E-value=0.025 Score=50.54 Aligned_cols=26 Identities=31% Similarity=0.451 Sum_probs=23.0
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
..++++|+|+.|.|||||.+.+....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 46899999999999999999998653
No 350
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.18 E-value=0.038 Score=43.40 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.3
Q ss_pred eEEEEeccCccchHHHHHHHHHh
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
..|+|.|.+|+|||||+..+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 56789999999999999999863
No 351
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.17 E-value=0.034 Score=43.82 Aligned_cols=24 Identities=17% Similarity=0.326 Sum_probs=20.7
Q ss_pred eeEEEEeccCccchHHHHHHHHHh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
.-.|+|.|.+|+|||||+..+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 456789999999999999999874
No 352
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.17 E-value=0.025 Score=45.76 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=20.9
Q ss_pred eEEEEeccCccchHHHHHHHHHhh
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
.+.+|+|+.|.|||||+..++--+
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 378999999999999999987643
No 353
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.16 E-value=0.052 Score=50.45 Aligned_cols=29 Identities=28% Similarity=0.351 Sum_probs=24.8
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcC
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGE 196 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 196 (349)
...+++|+|++|+||||++..++..+...
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~ 125 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 35788999999999999999999876544
No 354
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=94.15 E-value=0.051 Score=49.23 Aligned_cols=27 Identities=33% Similarity=0.346 Sum_probs=23.6
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
...+|+|+|.+|+|||||...+.....
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~ 99 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLT 99 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 468999999999999999999987543
No 355
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=94.14 E-value=0.82 Score=43.94 Aligned_cols=39 Identities=18% Similarity=0.175 Sum_probs=28.3
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhhcCC---cceEEEEecc
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFTGEF---DGSCFMSDVR 207 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f---~~~~~~~~~~ 207 (349)
.+.+.|.|..|.|||++++.+...+...+ +..+|+.+..
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpK 255 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPK 255 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSS
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCC
Confidence 36788999999999999998887654333 3456665443
No 356
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.14 E-value=0.021 Score=49.55 Aligned_cols=25 Identities=44% Similarity=0.401 Sum_probs=21.9
Q ss_pred eeEEEEeccCccchHHHHHHHHHhh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
..+++|.|+.|.|||||.+.++-..
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999998654
No 357
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.13 E-value=0.03 Score=46.58 Aligned_cols=25 Identities=24% Similarity=0.165 Sum_probs=21.9
Q ss_pred CeeEEEEeccCccchHHHHHHHHHh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
....|.|.|.+|+|||||+..+...
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4567889999999999999999874
No 358
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.12 E-value=0.015 Score=50.42 Aligned_cols=27 Identities=19% Similarity=0.236 Sum_probs=23.4
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
....|+|.|..|+||||+|+.+++.+.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 357899999999999999999987763
No 359
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.12 E-value=0.019 Score=51.07 Aligned_cols=24 Identities=29% Similarity=0.499 Sum_probs=21.4
Q ss_pred CeeEEEEeccCccchHHHHHHHHH
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFD 191 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~ 191 (349)
...+++|+|+.|.|||||++.+..
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCchHHHHHHHHHc
Confidence 347899999999999999999875
No 360
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.11 E-value=0.047 Score=51.91 Aligned_cols=29 Identities=21% Similarity=0.331 Sum_probs=23.7
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcC
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGE 196 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 196 (349)
...+|.|+|.+|+||||++..++..+...
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~ 128 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRK 128 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 46789999999999999999999766543
No 361
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.11 E-value=0.031 Score=44.63 Aligned_cols=24 Identities=42% Similarity=0.418 Sum_probs=21.3
Q ss_pred CeeEEEEeccCccchHHHHHHHHH
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFD 191 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~ 191 (349)
....|+|.|.+|+|||||+..+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456788999999999999999976
No 362
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.09 E-value=0.027 Score=45.69 Aligned_cols=23 Identities=26% Similarity=0.528 Sum_probs=20.2
Q ss_pred eEEEEeccCccchHHHHHHHHHh
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
-.|+|.|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45779999999999999999864
No 363
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.04 E-value=0.029 Score=44.08 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=19.9
Q ss_pred eEEEEeccCccchHHHHHHHHHh
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
-.|+|.|.+|+|||||+..+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999998863
No 364
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.03 E-value=0.027 Score=51.10 Aligned_cols=23 Identities=39% Similarity=0.577 Sum_probs=21.1
Q ss_pred eeEEEEeccCccchHHHHHHHHH
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFD 191 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~ 191 (349)
..+++|.|+.|+|||||.+.++-
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 47899999999999999999985
No 365
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.02 E-value=0.029 Score=44.16 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=20.0
Q ss_pred eEEEEeccCccchHHHHHHHHHh
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
-.|+|.|.+|+|||||...+...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999999863
No 366
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.02 E-value=0.049 Score=51.45 Aligned_cols=29 Identities=14% Similarity=0.114 Sum_probs=24.3
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhhcCC
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFTGEF 197 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f 197 (349)
..+|.++|++|+||||+++.+++.....|
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~ 67 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIG 67 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 46788999999999999999998765443
No 367
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.00 E-value=0.027 Score=51.51 Aligned_cols=23 Identities=35% Similarity=0.380 Sum_probs=21.1
Q ss_pred eeEEEEeccCccchHHHHHHHHH
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFD 191 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~ 191 (349)
..+++|.|+.|+|||||.+.++-
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHHc
Confidence 47899999999999999999985
No 368
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.99 E-value=0.03 Score=44.31 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=20.7
Q ss_pred eeEEEEeccCccchHHHHHHHHHh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
.-.|+|.|.+|+|||||+..+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 356789999999999999999864
No 369
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=93.94 E-value=0.036 Score=46.81 Aligned_cols=26 Identities=15% Similarity=0.173 Sum_probs=23.3
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
..+|.|.|+.|+||||+|+.+++++.
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg 39 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELG 39 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcC
Confidence 47899999999999999999998763
No 370
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.93 E-value=0.031 Score=44.10 Aligned_cols=22 Identities=14% Similarity=0.332 Sum_probs=19.5
Q ss_pred EEEEeccCccchHHHHHHHHHh
Q 037291 171 IVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 171 ~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
.|+|.|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4779999999999999999864
No 371
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.92 E-value=0.029 Score=45.35 Aligned_cols=24 Identities=21% Similarity=0.173 Sum_probs=20.7
Q ss_pred eeEEEEeccCccchHHHHHHHHHh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
.-.|+|.|.+|+|||||+..+...
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 456779999999999999999874
No 372
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.92 E-value=0.029 Score=51.01 Aligned_cols=24 Identities=38% Similarity=0.512 Sum_probs=21.4
Q ss_pred CeeEEEEeccCccchHHHHHHHHH
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFD 191 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~ 191 (349)
...+++|.|+.|.|||||.+.+.-
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEEcCCCchHHHHHHHHhc
Confidence 347899999999999999999875
No 373
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=93.92 E-value=0.027 Score=45.16 Aligned_cols=23 Identities=30% Similarity=0.310 Sum_probs=20.3
Q ss_pred eEEEEeccCccchHHHHHHHHHh
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
..|+|.|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999999864
No 374
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.91 E-value=0.029 Score=50.97 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=21.4
Q ss_pred CeeEEEEeccCccchHHHHHHHHH
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFD 191 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~ 191 (349)
...+++|.|+.|+|||||.+.++-
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEEcCCCchHHHHHHHHHC
Confidence 347899999999999999999985
No 375
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.91 E-value=0.033 Score=43.78 Aligned_cols=21 Identities=24% Similarity=0.249 Sum_probs=19.0
Q ss_pred EEEeccCccchHHHHHHHHHh
Q 037291 172 VGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 172 i~I~G~~GiGKTtLa~~~~~~ 192 (349)
|+|.|.+|+|||||+..+...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 679999999999999999764
No 376
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=93.91 E-value=0.012 Score=57.36 Aligned_cols=50 Identities=16% Similarity=0.044 Sum_probs=33.6
Q ss_pred CCCcccccchhhhHHHhhhhcCC--------CCeeEEEEeccCccchHHHHHHHHHhh
Q 037291 144 SNGLVGLNSRIEQIKPFLCMDLS--------DTVQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 144 ~~~~vGr~~~~~~l~~~L~~~~~--------~~~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
.+.++|.+...+.+...|..... .+...+.|+|++|+|||+||+.+++..
T Consensus 294 ~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 294 APSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp SSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred cchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 45688988766655444433200 001157899999999999999998754
No 377
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.90 E-value=0.029 Score=44.37 Aligned_cols=22 Identities=32% Similarity=0.664 Sum_probs=19.6
Q ss_pred eEEEEeccCccchHHHHHHHHH
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFD 191 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~ 191 (349)
-.|+|.|.+|+|||||+..+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4577999999999999999986
No 378
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.90 E-value=0.034 Score=45.21 Aligned_cols=25 Identities=12% Similarity=0.440 Sum_probs=21.8
Q ss_pred CeeEEEEeccCccchHHHHHHHHHh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
....|+|.|.+|+|||||...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4677889999999999999999763
No 379
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.89 E-value=0.032 Score=44.09 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=20.3
Q ss_pred eEEEEeccCccchHHHHHHHHHh
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
-.|+|.|.+|+|||||+..+...
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45789999999999999999874
No 380
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.88 E-value=0.03 Score=50.98 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=21.8
Q ss_pred CeeEEEEeccCccchHHHHHHHHHh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
...+++|.|+.|+|||||.+.++--
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcC
Confidence 3478999999999999999999853
No 381
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.87 E-value=0.034 Score=50.72 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=22.8
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
...++|+|+.|+|||||++.++..+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 47889999999999999999987653
No 382
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.87 E-value=0.04 Score=43.54 Aligned_cols=22 Identities=36% Similarity=0.395 Sum_probs=19.2
Q ss_pred eEEEEeccCccchHHHHHHHHH
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFD 191 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~ 191 (349)
--|+|.|.+|+|||||+..+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4578999999999999999864
No 383
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.86 E-value=0.025 Score=49.81 Aligned_cols=26 Identities=31% Similarity=0.475 Sum_probs=22.3
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
...+++|.|+.|+|||||.+.++--.
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34789999999999999999987643
No 384
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.86 E-value=0.029 Score=54.03 Aligned_cols=28 Identities=32% Similarity=0.360 Sum_probs=24.6
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhc
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTG 195 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~ 195 (349)
...+++|.|+.|+|||||++.++..+..
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 3478999999999999999999998754
No 385
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.85 E-value=0.03 Score=44.78 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=20.2
Q ss_pred eEEEEeccCccchHHHHHHHHHh
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
--|+|.|.+|+|||||+..+...
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45779999999999999999874
No 386
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=93.85 E-value=0.026 Score=51.04 Aligned_cols=25 Identities=32% Similarity=0.290 Sum_probs=21.8
Q ss_pred CeeEEEEeccCccchHHHHHHHHHh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
...+++|.|+.|+|||||.+.++--
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTS
T ss_pred CCCEEEEECCCCccHHHHHHHHHcC
Confidence 3478999999999999999999853
No 387
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=93.84 E-value=0.032 Score=45.26 Aligned_cols=24 Identities=29% Similarity=0.286 Sum_probs=20.3
Q ss_pred eeEEEEeccCccchHHHHHHHHHh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
.-.|+|.|.+|+|||||+..+...
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 356779999999999999888763
No 388
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.84 E-value=0.042 Score=43.90 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=21.5
Q ss_pred CeeEEEEeccCccchHHHHHHHHHh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
....|+|.|.+|+|||||+..+...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4567889999999999999998864
No 389
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.83 E-value=0.044 Score=43.76 Aligned_cols=25 Identities=24% Similarity=0.456 Sum_probs=21.7
Q ss_pred CeeEEEEeccCccchHHHHHHHHHh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
....|+|.|.+|+|||||+..+...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4567889999999999999999874
No 390
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.82 E-value=0.031 Score=51.11 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=21.4
Q ss_pred eeEEEEeccCccchHHHHHHHHHh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
..+++|.|+.|+|||||.+.++--
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCcHHHHHHHHHHcC
Confidence 478999999999999999999853
No 391
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=93.82 E-value=0.061 Score=44.24 Aligned_cols=35 Identities=20% Similarity=0.240 Sum_probs=25.4
Q ss_pred eEEEEe-ccCccchHHHHHHHHHhhhcCCcceEEEE
Q 037291 170 QIVGIW-GMGGIGKTTLAEAIFDQFTGEFDGSCFMS 204 (349)
Q Consensus 170 ~~i~I~-G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 204 (349)
++|+|+ +-||+||||+|..++..+...-..++.+.
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD 37 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVD 37 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEE
Confidence 567777 68999999999999987765433344443
No 392
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=93.80 E-value=0.043 Score=53.56 Aligned_cols=27 Identities=30% Similarity=0.345 Sum_probs=24.0
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
...+|.|.|++|+||||+|+.+.+.+.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~ 77 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLV 77 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999998763
No 393
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=93.79 E-value=0.078 Score=49.64 Aligned_cols=88 Identities=17% Similarity=0.137 Sum_probs=48.3
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhhcCC---cceEEEEeccccccCCCChHHHHHHHHHHhhcccccc---c-CC----
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFTGEF---DGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEV---A-GA---- 237 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f---~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~---~-~~---- 237 (349)
.+.++|.|.+|+|||+|+..+++....+. ..++.+..+++- .....++...+...-....... . ++
T Consensus 152 GQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER---~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~ 228 (469)
T 2c61_A 152 GQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGIT---NEEAQYFMSDFEKTGALERAVVFLNLADDPAVE 228 (469)
T ss_dssp TCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEEC---HHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCC---cHHHHHHHHHHHhccCccceEEEEECCCCCHHH
Confidence 46677899999999999999998654321 123333333332 2345555555544311111100 1 11
Q ss_pred -----CchHHHHHHhC---CCeEEEEEeCC
Q 037291 238 -----NIPHFTKERVW---RMKVLIVLDDV 259 (349)
Q Consensus 238 -----~~~~~~~~~l~---~k~~LlVlDdv 259 (349)
...-.+.++++ ++.+||++||+
T Consensus 229 r~~~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 229 RIVTPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 11122334443 68999999997
No 394
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.79 E-value=0.032 Score=51.01 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=21.4
Q ss_pred CeeEEEEeccCccchHHHHHHHHH
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFD 191 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~ 191 (349)
...+++|.|+.|+|||||.+.++-
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCChHHHHHHHHHc
Confidence 347899999999999999999985
No 395
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.78 E-value=0.034 Score=44.36 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=20.8
Q ss_pred eeEEEEeccCccchHHHHHHHHHh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
...|+|.|.+|+|||||...+...
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 456789999999999999999863
No 396
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.77 E-value=0.043 Score=53.18 Aligned_cols=26 Identities=19% Similarity=0.135 Sum_probs=23.5
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
..+|.|.|++|+||||+|+.+.+++.
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 46889999999999999999998765
No 397
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=93.75 E-value=0.025 Score=51.37 Aligned_cols=24 Identities=38% Similarity=0.479 Sum_probs=21.4
Q ss_pred CeeEEEEeccCccchHHHHHHHHH
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFD 191 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~ 191 (349)
...+++|.|+.|+|||||.+.++-
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 347899999999999999999985
No 398
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.75 E-value=0.035 Score=43.77 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=20.1
Q ss_pred eEEEEeccCccchHHHHHHHHHh
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
-.|+|.|.+|+|||||+..+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999999863
No 399
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.74 E-value=0.03 Score=44.17 Aligned_cols=21 Identities=33% Similarity=0.426 Sum_probs=18.5
Q ss_pred EEEEeccCccchHHHHHHHHH
Q 037291 171 IVGIWGMGGIGKTTLAEAIFD 191 (349)
Q Consensus 171 ~i~I~G~~GiGKTtLa~~~~~ 191 (349)
-|+|.|.+|+|||||+..+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 467999999999999998864
No 400
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.73 E-value=0.099 Score=56.61 Aligned_cols=52 Identities=23% Similarity=0.192 Sum_probs=35.2
Q ss_pred chhhhHHHhhh-hcCCCCeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEE
Q 037291 152 SRIEQIKPFLC-MDLSDTVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMS 204 (349)
Q Consensus 152 ~~~~~l~~~L~-~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 204 (349)
.-+..|..+|. .. -....++.|.|++|+||||||.+++......-..++|+.
T Consensus 715 TG~~eLD~lLg~GG-l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS 767 (1706)
T 3cmw_A 715 TGSLSLDIALGAGG-LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 767 (1706)
T ss_dssp CSCHHHHHHTSSSS-EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred cCcHHHHHHhccCC-cCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEe
Confidence 33445555553 11 123478999999999999999999987764434566665
No 401
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=93.73 E-value=0.039 Score=45.56 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=20.5
Q ss_pred eeEEEEeccCccchHHHHHHHHHh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
.-.|+|.|.+|+|||||+..+...
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 456779999999999999998863
No 402
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.72 E-value=0.035 Score=45.12 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=20.6
Q ss_pred eeEEEEeccCccchHHHHHHHHHh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
.--|+|.|.+|+|||||+..+...
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 356779999999999999998864
No 403
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=93.71 E-value=0.092 Score=53.61 Aligned_cols=24 Identities=17% Similarity=0.116 Sum_probs=21.1
Q ss_pred CeeEEEEeccCccchHHHHHHHHH
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFD 191 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~ 191 (349)
...+++|.|+.|.|||||.+.++-
T Consensus 672 ~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 672 SERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp SCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHH
Confidence 457999999999999999998864
No 404
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.66 E-value=0.046 Score=43.12 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=20.1
Q ss_pred eEEEEeccCccchHHHHHHHHHh
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
-.|+|.|.+|+|||||+..+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45789999999999999999863
No 405
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=93.63 E-value=0.034 Score=45.17 Aligned_cols=26 Identities=27% Similarity=0.263 Sum_probs=20.7
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
.--|+|.|.+|+|||||++.+.....
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 45678999999999999977765443
No 406
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=93.63 E-value=0.071 Score=49.51 Aligned_cols=29 Identities=24% Similarity=0.249 Sum_probs=24.7
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcC
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGE 196 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 196 (349)
...+++|.|+.|+|||||.+.+...+...
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~~~ 194 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELNSS 194 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcCCC
Confidence 45789999999999999999999876543
No 407
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=93.59 E-value=0.068 Score=50.31 Aligned_cols=28 Identities=32% Similarity=0.372 Sum_probs=23.7
Q ss_pred eEEEEeccCccchHHHHHHHHHhhhcCC
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQFTGEF 197 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~~~~f 197 (349)
+.+.|.|.+|+||||++..++..+....
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l~~~~ 73 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEALISTG 73 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcC
Confidence 3888999999999999999998765443
No 408
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=93.58 E-value=0.036 Score=45.19 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=20.3
Q ss_pred eEEEEeccCccchHHHHHHHHHh
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
..|+|.|.+|+|||||...+...
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999999863
No 409
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.58 E-value=0.043 Score=43.79 Aligned_cols=25 Identities=32% Similarity=0.407 Sum_probs=21.3
Q ss_pred CCeeEEEEeccCccchHHHHHHHHH
Q 037291 167 DTVQIVGIWGMGGIGKTTLAEAIFD 191 (349)
Q Consensus 167 ~~~~~i~I~G~~GiGKTtLa~~~~~ 191 (349)
+....|+|.|.+|+|||||+..+..
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCS
T ss_pred CcceEEEEECCCCCCHHHHHHHHhc
Confidence 3456788999999999999999875
No 410
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=93.58 E-value=0.041 Score=44.57 Aligned_cols=25 Identities=28% Similarity=0.492 Sum_probs=21.5
Q ss_pred CeeEEEEeccCccchHHHHHHHHHh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
....|+|.|.+|+|||||+..+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 3467889999999999999999874
No 411
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.55 E-value=0.048 Score=49.64 Aligned_cols=92 Identities=14% Similarity=0.117 Sum_probs=49.0
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHHHhhc-ccccc---cCCCchHHHH
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILS-EKLEV---AGANIPHFTK 244 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~-~~~~~---~~~~~~~~~~ 244 (349)
...++|+|+.|.|||||++.++..+.. -.+.+.+.+..+... . ..... . .+.. +.... ........++
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~~-~~g~I~ie~~~e~~~-~-~~~~~----v-~~v~~q~~~~~~~~~~t~~~~i~ 246 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIPF-DQRLITIEDVPELFL-P-DHPNH----V-HLFYPSEAKEEENAPVTAATLLR 246 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSCT-TSCEEEEESSSCCCC-T-TCSSE----E-EEECC----------CCHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCC-CceEEEECCccccCc-c-ccCCE----E-EEeecCccccccccccCHHHHHH
Confidence 368899999999999999999886543 345566654433211 0 00000 0 0000 00000 1122335566
Q ss_pred HHhCCCeEEEEEeCCCChhHHHHH
Q 037291 245 ERVWRMKVLIVLDDVNEVGQLEGL 268 (349)
Q Consensus 245 ~~l~~k~~LlVlDdv~~~~~~~~l 268 (349)
..+...+-.++++++...+.++.+
T Consensus 247 ~~l~~~pd~~l~~e~r~~~~~~~l 270 (361)
T 2gza_A 247 SCLRMKPTRILLAELRGGEAYDFI 270 (361)
T ss_dssp HHTTSCCSEEEESCCCSTHHHHHH
T ss_pred HHHhcCCCEEEEcCchHHHHHHHH
Confidence 666666667778888765544433
No 412
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=93.55 E-value=0.11 Score=46.93 Aligned_cols=30 Identities=30% Similarity=0.403 Sum_probs=23.8
Q ss_pred CCeeEEEEeccCccchHHHHHHHHHhhhcC
Q 037291 167 DTVQIVGIWGMGGIGKTTLAEAIFDQFTGE 196 (349)
Q Consensus 167 ~~~~~i~I~G~~GiGKTtLa~~~~~~~~~~ 196 (349)
....++...|.||+||||+|..++..+...
T Consensus 24 ~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~ 53 (349)
T 3ug7_A 24 DGTKYIMFGGKGGVGKTTMSAATGVYLAEK 53 (349)
T ss_dssp CSCEEEEEECSSSTTHHHHHHHHHHHHHHS
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHHC
Confidence 345666777999999999999998876544
No 413
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.51 E-value=0.04 Score=44.28 Aligned_cols=24 Identities=29% Similarity=0.544 Sum_probs=21.0
Q ss_pred eeEEEEeccCccchHHHHHHHHHh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
.-.|+|.|.+|+|||||+..+...
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456789999999999999999864
No 414
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=93.48 E-value=0.04 Score=44.79 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=21.0
Q ss_pred eeEEEEeccCccchHHHHHHHHHh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
...|+|.|.+|+|||||+..+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456789999999999999999873
No 415
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.48 E-value=0.053 Score=43.16 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=21.6
Q ss_pred CeeEEEEeccCccchHHHHHHHHHh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
....|+|.|.+|+|||||+..+...
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3567889999999999999999864
No 416
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.48 E-value=0.053 Score=43.80 Aligned_cols=25 Identities=24% Similarity=0.216 Sum_probs=21.4
Q ss_pred CeeEEEEeccCccchHHHHHHHHHh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
....|+|.|.+|+|||||+..+...
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcC
Confidence 3466789999999999999999863
No 417
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=93.47 E-value=0.041 Score=44.36 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=20.1
Q ss_pred eEEEEeccCccchHHHHHHHHHh
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
-.|+|.|.+|+|||||+..+...
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45779999999999999999863
No 418
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.47 E-value=0.055 Score=42.76 Aligned_cols=24 Identities=29% Similarity=0.299 Sum_probs=20.7
Q ss_pred eeEEEEeccCccchHHHHHHHHHh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
...|+|.|.+|+|||||+..+...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 356789999999999999999763
No 419
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.47 E-value=0.063 Score=42.74 Aligned_cols=24 Identities=25% Similarity=0.363 Sum_probs=20.6
Q ss_pred eeEEEEeccCccchHHHHHHHHHh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
.-.|+|.|.+|+|||||+..+...
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 455789999999999999999863
No 420
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=93.47 E-value=0.048 Score=43.99 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=21.4
Q ss_pred CeeEEEEeccCccchHHHHHHHHHh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
....|+|.|.+|+|||||...+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4567889999999999999998764
No 421
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.47 E-value=0.037 Score=50.90 Aligned_cols=24 Identities=42% Similarity=0.552 Sum_probs=21.5
Q ss_pred CeeEEEEeccCccchHHHHHHHHH
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFD 191 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~ 191 (349)
...+++|.|+.|+|||||.+.++-
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCChHHHHHHHHhC
Confidence 347899999999999999999985
No 422
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.46 E-value=0.041 Score=44.19 Aligned_cols=23 Identities=26% Similarity=0.260 Sum_probs=20.0
Q ss_pred eEEEEeccCccchHHHHHHHHHh
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
-.|+|.|.+|+|||||+..+...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999998863
No 423
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=93.46 E-value=0.034 Score=44.96 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=19.5
Q ss_pred EEEEeccCccchHHHHHHHHHh
Q 037291 171 IVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 171 ~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
.|+|.|.+|+|||||+..+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999999863
No 424
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=93.42 E-value=0.056 Score=50.92 Aligned_cols=88 Identities=20% Similarity=0.137 Sum_probs=46.5
Q ss_pred CeeEEEEeccCccchHHHHH-HHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHHHhhccccc-c--c-CCCc---
Q 037291 168 TVQIVGIWGMGGIGKTTLAE-AIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLE-V--A-GANI--- 239 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~-~--~-~~~~--- 239 (349)
..+.++|.|.+|+|||+||. .+++.. ..+..|.+..+++- .....++...+...-...... . . ++-.
T Consensus 161 rGQR~~Ifg~~g~GKT~Lal~~I~~~~--~~dv~~V~~~iGeR---~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r 235 (502)
T 2qe7_A 161 RGQRELIIGDRQTGKTTIAIDTIINQK--GQDVICIYVAIGQK---QSTVAGVVETLRQHDALDYTIVVTASASEPAPLL 235 (502)
T ss_dssp TTCBCEEEECSSSCHHHHHHHHHHGGG--SCSEEEEEEEESCC---HHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHH
T ss_pred cCCEEEEECCCCCCchHHHHHHHHHhh--cCCcEEEEEECCCc---chHHHHHHHHHhhCCCcceeEEEEECCCCCHHHH
Confidence 34677899999999999965 666654 34444444434332 233445554444321111000 0 1 1110
Q ss_pred ------hHHHHHHh--CCCeEEEEEeCCC
Q 037291 240 ------PHFTKERV--WRMKVLIVLDDVN 260 (349)
Q Consensus 240 ------~~~~~~~l--~~k~~LlVlDdv~ 260 (349)
.-.+.+++ .++.+||++||+.
T Consensus 236 ~~a~~~a~tiAEyfrd~G~dVLl~~Dslt 264 (502)
T 2qe7_A 236 YLAPYAGCAMGEYFMYKGKHALVVYDDLS 264 (502)
T ss_dssp HHHHHHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEEecHH
Confidence 11223333 4789999999983
No 425
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=93.40 E-value=0.042 Score=44.92 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=20.0
Q ss_pred eeEEEEeccCccchHHHHHHHHH
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFD 191 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~ 191 (349)
.--|+|.|.+|+|||||...+..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 35578999999999999999875
No 426
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=93.40 E-value=0.041 Score=44.33 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=21.0
Q ss_pred eeEEEEeccCccchHHHHHHHHHh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
...|+|.|.+|+|||||+..+...
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 456789999999999999999864
No 427
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.40 E-value=0.041 Score=43.84 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=19.5
Q ss_pred eEEEEeccCccchHHHHHHHHH
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFD 191 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~ 191 (349)
-.|+|.|.+|+|||||+..+..
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4577999999999999999985
No 428
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.39 E-value=0.043 Score=43.95 Aligned_cols=23 Identities=26% Similarity=0.213 Sum_probs=19.9
Q ss_pred eEEEEeccCccchHHHHHHHHHh
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
-.|+|.|.+|+|||||+..+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45779999999999999998863
No 429
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.38 E-value=0.043 Score=44.05 Aligned_cols=24 Identities=29% Similarity=0.493 Sum_probs=20.8
Q ss_pred eeEEEEeccCccchHHHHHHHHHh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
...|+|.|.+|+|||||+..+...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 456789999999999999999863
No 430
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.35 E-value=0.044 Score=43.83 Aligned_cols=24 Identities=21% Similarity=0.255 Sum_probs=20.7
Q ss_pred eeEEEEeccCccchHHHHHHHHHh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
...|+|.|.+|+|||||+..+...
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 356789999999999999999863
No 431
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.33 E-value=0.044 Score=44.77 Aligned_cols=24 Identities=25% Similarity=0.522 Sum_probs=20.7
Q ss_pred eeEEEEeccCccchHHHHHHHHHh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
.-.|+|.|.+|+|||||+..+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356779999999999999999864
No 432
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=93.31 E-value=0.28 Score=46.81 Aligned_cols=49 Identities=16% Similarity=0.197 Sum_probs=31.8
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhcCCcceEEEEeccccccCCCChHHHHHH
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKE 222 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 222 (349)
..+.++|.|.+|+|||+|+.++++.. +-+.++|+- +++- .....++...
T Consensus 226 kGqr~~I~g~~g~GKT~L~~~ia~~~--~~~~~V~~~-iGER---~~Ev~e~~~~ 274 (588)
T 3mfy_A 226 KGGTAAIPGPAGSGKTVTQHQLAKWS--DAQVVIYIG-CGER---GNEMTDVLEE 274 (588)
T ss_dssp TTCEEEECSCCSHHHHHHHHHHHHHS--SCSEEEEEE-CCSS---SSHHHHHHHH
T ss_pred cCCeEEeecCCCCCHHHHHHHHHhcc--CCCEEEEEE-eccc---HHHHHHHHHH
Confidence 34778999999999999999987753 223444443 3332 3344454444
No 433
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.28 E-value=0.045 Score=44.59 Aligned_cols=24 Identities=13% Similarity=0.235 Sum_probs=20.9
Q ss_pred eeEEEEeccCccchHHHHHHHHHh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
.-.|+|.|.+|+|||||+..+...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456789999999999999999874
No 434
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.27 E-value=0.044 Score=43.95 Aligned_cols=23 Identities=22% Similarity=0.472 Sum_probs=20.6
Q ss_pred eeEEEEeccCccchHHHHHHHHH
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFD 191 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~ 191 (349)
...|+|.|.+|+|||||+..+..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 46788999999999999999985
No 435
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.27 E-value=0.046 Score=43.67 Aligned_cols=24 Identities=33% Similarity=0.317 Sum_probs=20.8
Q ss_pred eeEEEEeccCccchHHHHHHHHHh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
.-.|+|.|.+|+|||||+..+...
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 456789999999999999999864
No 436
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=93.25 E-value=0.067 Score=44.26 Aligned_cols=26 Identities=19% Similarity=0.209 Sum_probs=22.7
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
...+|+|+|++|+||+|+|..+.+.+
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHc
Confidence 45799999999999999999887755
No 437
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=93.24 E-value=0.028 Score=46.48 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=20.8
Q ss_pred CeeEEEEeccCccchHHHHHHHHH
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFD 191 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~ 191 (349)
....++|.|.+|+|||||.+.+..
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 446789999999999999998765
No 438
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.23 E-value=0.046 Score=44.40 Aligned_cols=24 Identities=25% Similarity=0.245 Sum_probs=20.8
Q ss_pred eeEEEEeccCccchHHHHHHHHHh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
.-.|+|.|.+|+|||||+..+...
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHhcC
Confidence 356789999999999999999874
No 439
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.23 E-value=0.059 Score=45.23 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=24.2
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhhc
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFTG 195 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~~ 195 (349)
...|.|.|+.|+||||+++.+.+.+..
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 367889999999999999999998865
No 440
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=93.20 E-value=0.059 Score=48.76 Aligned_cols=28 Identities=32% Similarity=0.477 Sum_probs=24.3
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhhc
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFTG 195 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~~ 195 (349)
...+++|.|+.|+|||||.+.++.....
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4578999999999999999999987643
No 441
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.18 E-value=0.069 Score=43.74 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=21.3
Q ss_pred CeeEEEEeccCccchHHHHHHHHHh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
....|+|.|.+|+|||||+..+...
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3467889999999999999998863
No 442
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.18 E-value=0.045 Score=45.18 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=21.3
Q ss_pred CeeEEEEeccCccchHHHHHHHHHh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
....|+|.|.+|+|||||+..+...
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3466789999999999999998864
No 443
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=93.17 E-value=0.045 Score=45.30 Aligned_cols=25 Identities=20% Similarity=0.166 Sum_probs=21.3
Q ss_pred CeeEEEEeccCccchHHHHHHHHHh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
....|+|.|.+|+|||||+..+...
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3456789999999999999999874
No 444
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=93.15 E-value=0.11 Score=43.91 Aligned_cols=29 Identities=21% Similarity=0.330 Sum_probs=23.8
Q ss_pred CeeEEEEe-ccCccchHHHHHHHHHhhhcC
Q 037291 168 TVQIVGIW-GMGGIGKTTLAEAIFDQFTGE 196 (349)
Q Consensus 168 ~~~~i~I~-G~~GiGKTtLa~~~~~~~~~~ 196 (349)
..++|+|+ +-||+||||+|..++..+...
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~ 32 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQE 32 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhC
Confidence 35677777 579999999999999988765
No 445
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=93.15 E-value=0.058 Score=45.80 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=21.9
Q ss_pred CeeEEEEeccCccchHHHHHHHHHh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
....|+|.|.+|+|||||+..+...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHcCC
Confidence 4577889999999999999999863
No 446
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.14 E-value=0.049 Score=44.16 Aligned_cols=24 Identities=25% Similarity=0.238 Sum_probs=20.7
Q ss_pred eeEEEEeccCccchHHHHHHHHHh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
.-.|+|.|.+|+|||||+..+...
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 356789999999999999999863
No 447
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=93.12 E-value=0.045 Score=51.05 Aligned_cols=26 Identities=27% Similarity=0.252 Sum_probs=22.0
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
.+.++|.|.+|+|||+|+..+++...
T Consensus 147 GQr~~Ifgg~G~GKt~L~~~Ia~~~~ 172 (464)
T 3gqb_B 147 GQKLPIFSGSGLPANEIAAQIARQAT 172 (464)
T ss_dssp TCBCCEEEETTSCHHHHHHHHHHHCB
T ss_pred CCEEEEecCCCCCchHHHHHHHHHHH
Confidence 45678999999999999999988654
No 448
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=93.11 E-value=0.047 Score=44.43 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=20.8
Q ss_pred eeEEEEeccCccchHHHHHHHHHh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
.-.|+|.|.+|+|||||+..+...
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456789999999999999999864
No 449
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=93.11 E-value=0.084 Score=54.68 Aligned_cols=22 Identities=27% Similarity=0.060 Sum_probs=20.1
Q ss_pred eeEEEEeccCccchHHHHHHHH
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIF 190 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~ 190 (349)
..+++|+|+.|.|||||.+.+.
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 4799999999999999999883
No 450
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=93.10 E-value=0.096 Score=51.59 Aligned_cols=34 Identities=32% Similarity=0.267 Sum_probs=22.4
Q ss_pred hhhHHHhhhhcCCCCeeEEEEeccCccchHHHHHHHHHh
Q 037291 154 IEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 154 ~~~l~~~L~~~~~~~~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
.+.+...|... .+..|+||+|.|||+.+.++...
T Consensus 195 ~~AV~~al~~~-----~~~lI~GPPGTGKT~ti~~~I~~ 228 (646)
T 4b3f_X 195 KEAVLFALSQK-----ELAIIHGPPGTGKTTTVVEIILQ 228 (646)
T ss_dssp HHHHHHHHHCS-----SEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHhcCC-----CceEEECCCCCCHHHHHHHHHHH
Confidence 34455555433 46789999999999655555443
No 451
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=93.10 E-value=0.048 Score=44.72 Aligned_cols=23 Identities=35% Similarity=0.406 Sum_probs=20.1
Q ss_pred CeeEEEEeccCccchHHHHHHHH
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIF 190 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~ 190 (349)
....|+|.|.+|+|||||+..+.
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTC
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 45678899999999999999985
No 452
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=93.10 E-value=0.05 Score=44.06 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=21.0
Q ss_pred eeEEEEeccCccchHHHHHHHHHh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
...|+|.|.+|+|||||+..+...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 466889999999999999999864
No 453
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=93.09 E-value=0.048 Score=44.78 Aligned_cols=25 Identities=32% Similarity=0.417 Sum_probs=21.5
Q ss_pred CeeEEEEeccCccchHHHHHHHHHh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
....|+|.|.+|+|||||+..+...
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhC
Confidence 3466889999999999999999874
No 454
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=93.08 E-value=0.065 Score=50.62 Aligned_cols=90 Identities=20% Similarity=0.126 Sum_probs=47.3
Q ss_pred CeeEEEEeccCccchHHHHH-HHHHhhhc------CCcceEEEEeccccccCCCChHHHHHHHHHHhhccccc-c--c-C
Q 037291 168 TVQIVGIWGMGGIGKTTLAE-AIFDQFTG------EFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLE-V--A-G 236 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~-~~~~~~~~------~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~-~--~-~ 236 (349)
..+.++|.|.+|+|||+||. .+++.... +.+..|.+..+++- .....++...+...-...... . . +
T Consensus 161 rGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR---~~Ev~~~~~~~~~~g~m~~tvvV~atad 237 (510)
T 2ck3_A 161 RGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQK---RSTVAQLVKRLTDADAMKYTIVVSATAS 237 (510)
T ss_dssp TTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCC---HHHHHHHHHHHHHTTCGGGEEEEEECTT
T ss_pred cCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCC---cHHHHHHHHHHHhcCCcccceEEEECCC
Confidence 34677899999999999954 66665542 24443444434332 233445555544321111000 0 1 1
Q ss_pred CCc---------hHHHHHHh--CCCeEEEEEeCCC
Q 037291 237 ANI---------PHFTKERV--WRMKVLIVLDDVN 260 (349)
Q Consensus 237 ~~~---------~~~~~~~l--~~k~~LlVlDdv~ 260 (349)
+-. .-.+.+++ .++.+||++||+.
T Consensus 238 ~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dslt 272 (510)
T 2ck3_A 238 DAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLS 272 (510)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHH
Confidence 110 11223333 4789999999984
No 455
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=93.07 E-value=0.051 Score=44.25 Aligned_cols=24 Identities=29% Similarity=0.313 Sum_probs=20.8
Q ss_pred eeEEEEeccCccchHHHHHHHHHh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
.-.|+|.|.+|+|||||+..+...
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 456789999999999999999874
No 456
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=93.07 E-value=0.065 Score=43.96 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=21.5
Q ss_pred CeeEEEEeccCccchHHHHHHHHHh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
....|+|.|.+|+|||||+..+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3567889999999999999999864
No 457
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=93.06 E-value=0.1 Score=50.32 Aligned_cols=26 Identities=27% Similarity=0.258 Sum_probs=23.3
Q ss_pred eeEEEEeccCccchHHHHHHHHHhhh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
..+|.+.|++|+||||+|+.+...+.
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~ 397 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQ 397 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhh
Confidence 57889999999999999999998764
No 458
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=93.06 E-value=0.051 Score=44.13 Aligned_cols=24 Identities=29% Similarity=0.300 Sum_probs=20.6
Q ss_pred eeEEEEeccCccchHHHHHHHHHh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
.-.|+|.|.+|+|||||+..+...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456789999999999999999863
No 459
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.03 E-value=0.052 Score=44.08 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=21.5
Q ss_pred CeeEEEEeccCccchHHHHHHHHHh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
....|+|.|.+|+|||||+..+...
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3466889999999999999999874
No 460
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=93.03 E-value=0.041 Score=48.76 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=18.9
Q ss_pred eEEEEeccCccchHHHHHHHHH
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFD 191 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~ 191 (349)
--|+|.|++|+|||||.+.++.
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 3458999999999999999764
No 461
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=93.02 E-value=0.055 Score=44.40 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=19.9
Q ss_pred eeEEEEeccCccchHHHHHHHHH
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFD 191 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~ 191 (349)
...|+|.|.+|+|||||...+..
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 34578999999999999999875
No 462
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=93.02 E-value=0.048 Score=44.73 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=20.9
Q ss_pred eeEEEEeccCccchHHHHHHHHHh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
...|+|.|.+|+|||||+..+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999999864
No 463
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.02 E-value=0.055 Score=44.83 Aligned_cols=24 Identities=25% Similarity=0.228 Sum_probs=20.5
Q ss_pred eeEEEEeccCccchHHHHHHHHHh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
...|+|.|.+|+|||||+..+...
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456789999999999999999864
No 464
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=93.00 E-value=0.088 Score=46.24 Aligned_cols=39 Identities=21% Similarity=0.319 Sum_probs=26.4
Q ss_pred hhhHHHhhhhcCCCCeeEEEEec---cCccchHHHHHHHHHhhhcC
Q 037291 154 IEQIKPFLCMDLSDTVQIVGIWG---MGGIGKTTLAEAIFDQFTGE 196 (349)
Q Consensus 154 ~~~l~~~L~~~~~~~~~~i~I~G---~~GiGKTtLa~~~~~~~~~~ 196 (349)
+.++.+.+... .++|+|++ -||+||||+|..++..+...
T Consensus 23 ~~~~~r~~~~~----~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~ 64 (298)
T 2oze_A 23 LEELRRILSNK----NEAIVILNNYFKGGVGKSKLSTMFAYLTDKL 64 (298)
T ss_dssp HHHHHHHHHHH----CSCEEEEECCSSSSSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCC----CcEEEEEeccCCCCchHHHHHHHHHHHHHhC
Confidence 34444444433 34566664 99999999999999876543
No 465
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=93.00 E-value=0.053 Score=43.93 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=20.8
Q ss_pred eeEEEEeccCccchHHHHHHHHHh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
...|+|.|.+|+|||||+..+...
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999999863
No 466
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=92.93 E-value=0.054 Score=44.34 Aligned_cols=25 Identities=12% Similarity=0.232 Sum_probs=21.0
Q ss_pred CeeEEEEeccCccchHHHHHHHHHh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
....|+|.|.+|+|||||+..+...
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3467789999999999999999763
No 467
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=92.92 E-value=0.092 Score=45.53 Aligned_cols=25 Identities=24% Similarity=0.534 Sum_probs=21.7
Q ss_pred CeeEEEEeccCccchHHHHHHHHHh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
....|++.|.+|+|||||...+...
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 4567889999999999999999864
No 468
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=92.90 E-value=0.054 Score=49.15 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.0
Q ss_pred eEEEEeccCccchHHHHHHHHHhh
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
.+++|.|++|+|||||++.+....
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CEEEEECCCCccHHHHHHHHhccc
Confidence 578999999999999999988644
No 469
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=92.90 E-value=0.31 Score=41.32 Aligned_cols=22 Identities=32% Similarity=0.240 Sum_probs=19.4
Q ss_pred EEEeccCccchHHHHHHHHHhh
Q 037291 172 VGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 172 i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
+.|+|+.|.|||.+|..++...
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHS
T ss_pred EEEEeCCCCCHHHHHHHHHHHc
Confidence 7789999999999999888765
No 470
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=92.89 E-value=0.056 Score=43.79 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.4
Q ss_pred eEEEEeccCccchHHHHHHHHHh
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
..|+|.|.+|+|||||+..+...
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 56789999999999999999874
No 471
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=92.88 E-value=0.096 Score=47.83 Aligned_cols=38 Identities=21% Similarity=0.241 Sum_probs=27.5
Q ss_pred CCeeEEEEe-ccCccchHHHHHHHHHhhhcCCcceEEEE
Q 037291 167 DTVQIVGIW-GMGGIGKTTLAEAIFDQFTGEFDGSCFMS 204 (349)
Q Consensus 167 ~~~~~i~I~-G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 204 (349)
...++|+|+ |-||+||||+|..++..+...-..++.+.
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD 179 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLN 179 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 356888887 59999999999999987655423344443
No 472
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=92.88 E-value=0.19 Score=45.50 Aligned_cols=27 Identities=37% Similarity=0.413 Sum_probs=22.7
Q ss_pred CeeEEEEeccCccchHHHHHHHHHhhh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQFT 194 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~~~ 194 (349)
...++...|-||+||||+|..++..+.
T Consensus 17 ~~~i~v~sgKGGvGKTTvaanLA~~lA 43 (354)
T 2woj_A 17 THKWIFVGGKGGVGKTTSSCSIAIQMA 43 (354)
T ss_dssp SCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHH
Confidence 346667779999999999999998776
No 473
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=92.88 E-value=0.053 Score=48.03 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=20.6
Q ss_pred eEEEEeccCccchHHHHHHHHHhh
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
.+++|.|++|+|||||.+.+. ..
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 578999999999999999998 54
No 474
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=92.88 E-value=0.057 Score=45.41 Aligned_cols=25 Identities=12% Similarity=0.252 Sum_probs=21.5
Q ss_pred CeeEEEEeccCccchHHHHHHHHHh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
....|+|.|.+|+|||||+..+...
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567889999999999999998764
No 475
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=92.87 E-value=0.065 Score=43.60 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=21.5
Q ss_pred CCeeEEEEeccCccchHHHHHHHHH
Q 037291 167 DTVQIVGIWGMGGIGKTTLAEAIFD 191 (349)
Q Consensus 167 ~~~~~i~I~G~~GiGKTtLa~~~~~ 191 (349)
.....|+|.|.+|+|||||+..+..
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3467888999999999999999876
No 476
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=92.84 E-value=0.23 Score=46.73 Aligned_cols=52 Identities=23% Similarity=0.284 Sum_probs=30.3
Q ss_pred CeeEEEEeccCccchHHHH-HHHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHH
Q 037291 168 TVQIVGIWGMGGIGKTTLA-EAIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEML 224 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa-~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll 224 (349)
..+.++|.|.+|+|||+|| ..+.+.. ..+..|.+..+++- .....++...+.
T Consensus 161 rGQR~~Ifg~~g~GKT~l~l~~I~n~~--~~dv~~V~~~IGeR---~~ev~e~~~~l~ 213 (513)
T 3oaa_A 161 RGQRELIIGDRQTGKTALAIDAIINQR--DSGIKCIYVAIGQK---ASTISNVVRKLE 213 (513)
T ss_dssp TTCBCEEEESSSSSHHHHHHHHHHTTS--SSSCEEEEEEESCC---HHHHHHHHHHHH
T ss_pred cCCEEEeecCCCCCcchHHHHHHHhhc--cCCceEEEEEecCC---hHHHHHHHHHHh
Confidence 3467789999999999996 4565542 33433333333332 234445555543
No 477
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=92.84 E-value=0.24 Score=46.70 Aligned_cols=88 Identities=19% Similarity=0.138 Sum_probs=46.8
Q ss_pred CeeEEEEeccCccchHHHHH-HHHHhhhcCCcceEEEEeccccccCCCChHHHHHHHHHHhhcccccc---c-CCCc---
Q 037291 168 TVQIVGIWGMGGIGKTTLAE-AIFDQFTGEFDGSCFMSDVRRNSETGGGLEHLQKEMLSTILSEKLEV---A-GANI--- 239 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~---~-~~~~--- 239 (349)
..+.++|.|.+|+|||+||. .+++.. ..+..|.+..+++- .....++...+...-....... . ++-.
T Consensus 174 rGQR~~I~g~~g~GKT~Lal~~I~~~~--~~dv~~V~~~IGeR---~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r 248 (515)
T 2r9v_A 174 RGQRELIIGDRQTGKTAIAIDTIINQK--GQGVYCIYVAIGQK---KSAIARIIDKLRQYGAMEYTTVVVASASDPASLQ 248 (515)
T ss_dssp TTCBEEEEEETTSSHHHHHHHHHHTTT--TTTEEEEEEEESCC---HHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHH
T ss_pred cCCEEEEEcCCCCCccHHHHHHHHHhh--cCCcEEEEEEcCCC---cHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHH
Confidence 34678899999999999965 666654 24444444334332 2334455555443211111100 1 1110
Q ss_pred ------hHHHHHHh--CCCeEEEEEeCCC
Q 037291 240 ------PHFTKERV--WRMKVLIVLDDVN 260 (349)
Q Consensus 240 ------~~~~~~~l--~~k~~LlVlDdv~ 260 (349)
.-.+.+++ .++.+||++||+.
T Consensus 249 ~~a~~~a~tiAEyfrd~G~dVLli~DslT 277 (515)
T 2r9v_A 249 YIAPYAGCAMGEYFAYSGRDALVVYDDLS 277 (515)
T ss_dssp HHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEeccHH
Confidence 11223333 4789999999984
No 478
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=92.84 E-value=0.064 Score=47.47 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=21.6
Q ss_pred eeEEEEeccCccchHHHHHHHHHh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
...|+|.|.+|+|||||...+...
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 468999999999999999999863
No 479
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=92.83 E-value=0.099 Score=45.11 Aligned_cols=25 Identities=24% Similarity=0.534 Sum_probs=21.8
Q ss_pred CeeEEEEeccCccchHHHHHHHHHh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
....|+|.|.+|+|||||+..+...
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4567889999999999999999864
No 480
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=92.81 E-value=0.055 Score=45.20 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=20.0
Q ss_pred eeEEEEeccCccchHHHHHHHHH
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFD 191 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~ 191 (349)
..-|+|.|.+|+|||||...+..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 45678999999999999999874
No 481
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=92.74 E-value=0.052 Score=44.43 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=20.0
Q ss_pred eeEEEEeccCccchHHHHHHHHHh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
.-.|+|.|.+|+|||||+..+...
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456779999999999999998853
No 482
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=92.73 E-value=0.06 Score=45.16 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=18.7
Q ss_pred EEEEeccCccchHHHHHHHHH
Q 037291 171 IVGIWGMGGIGKTTLAEAIFD 191 (349)
Q Consensus 171 ~i~I~G~~GiGKTtLa~~~~~ 191 (349)
-|.|.|.+|+|||+|+..+.+
T Consensus 15 KivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCcCHHHHHHHHHh
Confidence 367899999999999999876
No 483
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=92.71 E-value=0.067 Score=46.46 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=21.0
Q ss_pred eeEEEEeccCccchHHHHHHHHHh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
...|+|.|.+|+|||||...+...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999863
No 484
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=92.70 E-value=0.062 Score=44.83 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=21.2
Q ss_pred CeeEEEEeccCccchHHHHHHHHH
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFD 191 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~ 191 (349)
..-.|+|+|.-|+||||+++.+.+
T Consensus 8 ~~~~iglTGgigsGKStv~~~l~~ 31 (210)
T 4i1u_A 8 HMYAIGLTGGIGSGKTTVADLFAA 31 (210)
T ss_dssp SCCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998865
No 485
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.69 E-value=0.082 Score=42.99 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=20.3
Q ss_pred eeEEEEeccCccchHHHHHHHHH
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFD 191 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~ 191 (349)
...|+|.|.+|+|||||+..+..
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHc
Confidence 45678999999999999999986
No 486
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=92.67 E-value=0.074 Score=41.72 Aligned_cols=24 Identities=38% Similarity=0.476 Sum_probs=20.8
Q ss_pred eEEEEeccCccchHHHHHHHHHhh
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
.+.+|+|+.|.|||||..+++--+
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 678899999999999999887643
No 487
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=92.66 E-value=0.052 Score=44.13 Aligned_cols=29 Identities=21% Similarity=0.307 Sum_probs=23.2
Q ss_pred EEEeccCccchHHHHHHHHHhhhcCCcceEEEE
Q 037291 172 VGIWGMGGIGKTTLAEAIFDQFTGEFDGSCFMS 204 (349)
Q Consensus 172 i~I~G~~GiGKTtLa~~~~~~~~~~f~~~~~~~ 204 (349)
+.|+|.+|+||||+|.+++.. . ...+|+.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~---~~~~yia 30 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-A---PQVLYIA 30 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-C---SSEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHhc-C---CCeEEEe
Confidence 679999999999999999865 2 2456665
No 488
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=92.65 E-value=0.051 Score=43.71 Aligned_cols=24 Identities=29% Similarity=0.224 Sum_probs=20.7
Q ss_pred eeEEEEeccCccchHHHHHHHHHh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
...|+|.|.+|+|||||...+...
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 356789999999999999999863
No 489
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=92.65 E-value=0.44 Score=45.26 Aligned_cols=25 Identities=16% Similarity=0.186 Sum_probs=21.1
Q ss_pred eeEEEEeccCccchHHHHHHHHHhh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQF 193 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~~ 193 (349)
.+.+.|.|..|.|||++++.+.-.+
T Consensus 167 ~pHlLIaG~TGSGKSt~L~~li~sL 191 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGVNAMILSM 191 (512)
T ss_dssp SCSEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 3678899999999999999887644
No 490
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=92.65 E-value=0.052 Score=44.37 Aligned_cols=24 Identities=17% Similarity=0.425 Sum_probs=19.9
Q ss_pred eeEEEEeccCccchHHHHHHHHHh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
..-|.|.|.+|+|||||++.+.++
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 456779999999999999877664
No 491
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=92.62 E-value=0.061 Score=44.25 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=20.9
Q ss_pred eeEEEEeccCccchHHHHHHHHHh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
...|+|.|.+|+|||||+..+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999999863
No 492
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.60 E-value=0.062 Score=43.69 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=20.9
Q ss_pred eeEEEEeccCccchHHHHHHHHHh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
...|+|.|.+|+|||||+..+...
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 356789999999999999999864
No 493
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=92.59 E-value=0.05 Score=43.88 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=21.3
Q ss_pred CeeEEEEeccCccchHHHHHHHHHh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
....|+|.|.+|+|||||+..+...
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3466789999999999999999863
No 494
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=92.57 E-value=0.073 Score=47.27 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=23.0
Q ss_pred CCeeEEEEeccCccchHHHHHHHHHh
Q 037291 167 DTVQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 167 ~~~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
.....|+|+|.+|+|||||...+...
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 45789999999999999999999863
No 495
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=92.57 E-value=0.059 Score=44.24 Aligned_cols=24 Identities=21% Similarity=0.309 Sum_probs=20.7
Q ss_pred CeeEEEEeccCccchHHHHHHHHH
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFD 191 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~ 191 (349)
..-.|+|.|.+|+|||||+..+..
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHh
Confidence 346678999999999999999875
No 496
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.57 E-value=0.062 Score=44.35 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=20.3
Q ss_pred eEEEEeccCccchHHHHHHHHHh
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
..|+|.|.+|+|||||+..+...
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 56789999999999999999863
No 497
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=92.55 E-value=0.099 Score=46.41 Aligned_cols=23 Identities=35% Similarity=0.341 Sum_probs=20.9
Q ss_pred eEEEEeccCccchHHHHHHHHHh
Q 037291 170 QIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 170 ~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
.-+.|.|.+|+||||+|.++..+
T Consensus 145 ~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 145 VGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEEEeCCCCCHHHHHHHHHhc
Confidence 56889999999999999999875
No 498
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.54 E-value=0.066 Score=44.16 Aligned_cols=24 Identities=21% Similarity=0.407 Sum_probs=20.8
Q ss_pred eeEEEEeccCccchHHHHHHHHHh
Q 037291 169 VQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 169 ~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
...|+|.|.+|+|||||+..+...
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456789999999999999999863
No 499
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.53 E-value=0.082 Score=42.67 Aligned_cols=24 Identities=29% Similarity=0.214 Sum_probs=20.9
Q ss_pred CeeEEEEeccCccchHHHHHHHHH
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFD 191 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~ 191 (349)
....|+|.|.+|+|||||...+..
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 346778999999999999999985
No 500
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=92.50 E-value=0.064 Score=47.52 Aligned_cols=25 Identities=20% Similarity=0.338 Sum_probs=22.2
Q ss_pred CeeEEEEeccCccchHHHHHHHHHh
Q 037291 168 TVQIVGIWGMGGIGKTTLAEAIFDQ 192 (349)
Q Consensus 168 ~~~~i~I~G~~GiGKTtLa~~~~~~ 192 (349)
..+.|+|+|.+|+|||||...+...
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCC
Confidence 5678999999999999999999763
Done!