BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>037293
MPLPVNDHRNLVNAGRVTFAGWVFESVESKSRFSFSFKNGLDTKAEKSRKQLKERKNMAK
KIGGVKKTKASDAAKKKEGART

High Scoring Gene Products

Symbol, full name Information P value
AT3G04920 protein from Arabidopsis thaliana 2.2e-09
AT5G28060 protein from Arabidopsis thaliana 4.7e-09
rps24
ribosomal protein S24 		gene_product from Danio rerio 0.00057
RPS24 gene_product from Candida albicans 0.00093

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  037293
        (82 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2114830 - symbol:AT3G04920 species:3702 "Arabi...   137  2.2e-09   1
TAIR|locus:2143784 - symbol:AT5G28060 species:3702 "Arabi...   134  4.7e-09   1
ZFIN|ZDB-GENE-040109-5 - symbol:rps24 "ribosomal protein ...    86  0.00057   1
CGD|CAL0005300 - symbol:RPS24 species:5476 "Candida albic...    84  0.00093   1


>TAIR|locus:2114830 [details] [associations]
            symbol:AT3G04920 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000462
            "maturation of SSU-rRNA from tricistronic rRNA transcript
            (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA] [GO:0003735
            "structural constituent of ribosome" evidence=IEA;ISS] [GO:0005622
            "intracellular" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
            [GO:0005840 "ribosome" evidence=IEA;ISS] [GO:0006412 "translation"
            evidence=IEA;ISS] [GO:0006414 "translational elongation"
            evidence=IBA] [GO:0042254 "ribosome biogenesis" evidence=ISS]
            [GO:0005730 "nucleolus" evidence=IDA] [GO:0022626 "cytosolic
            ribosome" evidence=IDA] [GO:0005774 "vacuolar membrane"
            evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
            [GO:0016020 "membrane" evidence=IDA] [GO:0022627 "cytosolic small
            ribosomal subunit" evidence=IDA] [GO:0009507 "chloroplast"
            evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0005794
            "Golgi apparatus" evidence=RCA] [GO:0001510 "RNA methylation"
            evidence=RCA] HAMAP:MF_00545 InterPro:IPR001976 InterPro:IPR012677
            InterPro:IPR012678 Pfam:PF01282 ProDom:PD006052 GO:GO:0005886
            GO:GO:0005774 GO:GO:0009507 EMBL:CP002686 GenomeReviews:BA000014_GR
            GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003735
            EMBL:AC009465 GO:GO:0000462 GO:GO:0006414 GO:GO:0022627
            SUPFAM:SSF54189 EMBL:AY050364 EMBL:AY062671 EMBL:AY093332
            EMBL:AY094044 EMBL:AY086479 IPI:IPI00527080 RefSeq:NP_187143.1
            UniGene:At.19916 UniGene:At.20505 ProteinModelPortal:Q9SS17
            SMR:Q9SS17 STRING:Q9SS17 PaxDb:Q9SS17 PRIDE:Q9SS17
            EnsemblPlants:AT3G04920.1 GeneID:819652 KEGG:ath:AT3G04920
            GeneFarm:971 TAIR:At3g04920 eggNOG:COG2004 HOGENOM:HOG000186306
            InParanoid:Q9SS17 KO:K02974 OMA:RTRKVIT PhylomeDB:Q9SS17
            ProtClustDB:CLSN2684440 Genevestigator:Q9SS17 GermOnline:AT3G04920
            InterPro:IPR018098 PANTHER:PTHR10496 PROSITE:PS00529 Uniprot:Q9SS17
        Length = 133

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 30/60 (50%), Positives = 40/60 (66%)

Query:     9 RNLVNAGRVTFAGWVFESVESKSRFSFSFK---NGLDTKAEKSRKQLKERKNMAKKIGGV 65
             R     G+ +  G ++++VES  +F   ++   NGLDTK EKSRKQ+KERKN AKKI GV
Sbjct:    63 RTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIRGV 122


>TAIR|locus:2143784 [details] [associations]
            symbol:AT5G28060 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000462
            "maturation of SSU-rRNA from tricistronic rRNA transcript
            (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA] [GO:0003735
            "structural constituent of ribosome" evidence=IEA;ISS] [GO:0005622
            "intracellular" evidence=IEA] [GO:0005730 "nucleolus" evidence=IBA]
            [GO:0005737 "cytoplasm" evidence=ISM] [GO:0005840 "ribosome"
            evidence=IEA;ISS] [GO:0006412 "translation" evidence=IEA;ISS]
            [GO:0006414 "translational elongation" evidence=IBA] [GO:0042254
            "ribosome biogenesis" evidence=ISS] [GO:0022626 "cytosolic
            ribosome" evidence=IDA] [GO:0005618 "cell wall" evidence=IDA]
            [GO:0016020 "membrane" evidence=IDA] [GO:0022627 "cytosolic small
            ribosomal subunit" evidence=IDA] [GO:0005794 "Golgi apparatus"
            evidence=RCA] HAMAP:MF_00545 InterPro:IPR001976 InterPro:IPR012677
            InterPro:IPR012678 Pfam:PF01282 ProDom:PD006052 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0005618 GO:GO:0005730 GO:GO:0016020
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003735 EMBL:AC007627
            GO:GO:0000462 GO:GO:0006414 GO:GO:0022627 SUPFAM:SSF54189
            UniGene:At.13930 UniGene:At.20505 eggNOG:COG2004
            HOGENOM:HOG000186306 KO:K02974 ProtClustDB:CLSN2684440
            InterPro:IPR018098 PANTHER:PTHR10496 PROSITE:PS00529 EMBL:AF386992
            EMBL:AY072478 EMBL:AY086740 IPI:IPI00524234 RefSeq:NP_198158.1
            ProteinModelPortal:Q8LC83 SMR:Q8LC83 STRING:Q8LC83 PaxDb:Q8LC83
            PRIDE:Q8LC83 EnsemblPlants:AT5G28060.1 GeneID:832878
            KEGG:ath:AT5G28060 GeneFarm:970 TAIR:At5g28060 InParanoid:Q8LC83
            OMA:YDTLDFA PhylomeDB:Q8LC83 Genevestigator:Q8LC83
            GermOnline:AT5G28060 Uniprot:Q8LC83
        Length = 133

 Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
 Identities = 29/60 (48%), Positives = 40/60 (66%)

Query:     9 RNLVNAGRVTFAGWVFESVESKSRFSFSFK---NGLDTKAEKSRKQLKERKNMAKKIGGV 65
             R     G+ +  G ++++VE+  +F   ++   NGLDTK EKSRKQ+KERKN AKKI GV
Sbjct:    63 RTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIRGV 122


>ZFIN|ZDB-GENE-040109-5 [details] [associations]
            symbol:rps24 "ribosomal protein S24" species:7955
            "Danio rerio" [GO:0003735 "structural constituent of ribosome"
            evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
            "translation" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0022627
            "cytosolic small ribosomal subunit" evidence=IBA] [GO:0000462
            "maturation of SSU-rRNA from tricistronic rRNA transcript
            (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA] [GO:0006414
            "translational elongation" evidence=IBA] [GO:0005730 "nucleolus"
            evidence=IBA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
            InterPro:IPR001976 InterPro:IPR012677 InterPro:IPR012678
            Pfam:PF01282 ProDom:PD006052 ZFIN:ZDB-GENE-040109-5 GO:GO:0005730
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003735 GO:GO:0000462
            GO:GO:0006414 GO:GO:0022627 SUPFAM:SSF54189 HOGENOM:HOG000186306
            InterPro:IPR018098 PANTHER:PTHR10496 PROSITE:PS00529
            GeneTree:ENSGT00390000000153 HOVERGEN:HBG000969 EMBL:AL929330
            IPI:IPI00612846 UniGene:Dr.104391 Ensembl:ENSDART00000100813
            Uniprot:B7ZD34
        Length = 132

 Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
 Identities = 20/54 (37%), Positives = 33/54 (61%)

Query:    15 GRVTFAGWVFESVE--SKSRFSFSF-KNGLDTKAEKSRKQLKERKNMAKKIGGV 65
             G+ T  G +++S++   K+   +   ++GL  K + SRKQ KERKN  KK+ G+
Sbjct:    67 GKTTGFGMIYDSLDYAKKNEPKYRLQRHGLYEKKKTSRKQRKERKNRMKKVRGI 120


>CGD|CAL0005300 [details] [associations]
            symbol:RPS24 species:5476 "Candida albicans" [GO:0005730
            "nucleolus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
            [GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA
            transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
            InterPro:IPR001976 InterPro:IPR012677 InterPro:IPR012678
            Pfam:PF01282 ProDom:PD006052 CGD:CAL0005300 GO:GO:0000166
            GO:GO:0006412 Gene3D:3.30.70.330 GO:GO:0005840 GO:GO:0003735
            EMBL:AACQ01000051 EMBL:AACQ01000050 SUPFAM:SSF54189 eggNOG:COG2004
            KO:K02974 InterPro:IPR018098 PANTHER:PTHR10496 PROSITE:PS00529
            RefSeq:XP_717743.1 RefSeq:XP_717837.1 ProteinModelPortal:Q5A7K0
            STRING:Q5A7K0 GeneID:3640568 GeneID:3640691 KEGG:cal:CaO19.12921
            KEGG:cal:CaO19.5466 Uniprot:Q5A7K0
        Length = 135

 Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
 Identities = 23/60 (38%), Positives = 33/60 (55%)

Query:     9 RNLVNAGRVTFAGWVFESVESKSRFSFSFK---NGLDTKAEK-SRKQLKERKNMAKKIGG 64
             R     G+ T  G +++SV    RF  +++    GL  K EK SR+Q K++KN  KKI G
Sbjct:    61 RTQFGGGKSTGFGLIYQSVADAKRFEPAYRLVRYGLAEKVEKASRQQRKQKKNRDKKIFG 120


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.130   0.369    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       82        70   0.00091  102 3  11 23  0.49    28
                                                     29  0.41    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  444 (47 KB)
  Total size of DFA:  76 KB (2063 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.86u 0.11s 9.97t   Elapsed:  00:00:00
  Total cpu time:  9.86u 0.11s 9.97t   Elapsed:  00:00:00
  Start:  Sat May 11 07:37:51 2013   End:  Sat May 11 07:37:51 2013

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