BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037293
(82 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SS17|RS241_ARATH 40S ribosomal protein S24-1 OS=Arabidopsis thaliana GN=RPS24A PE=2
SV=1
Length = 133
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 44/58 (75%), Gaps = 3/58 (5%)
Query: 22 WVFESVESKSRFSFSFK---NGLDTKAEKSRKQLKERKNMAKKIGGVKKTKASDAAKK 76
++++VES +F ++ NGLDTK EKSRKQ+KERKN AKKI GVKKTKA DA KK
Sbjct: 76 LIYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIRGVKKTKAGDAKKK 133
>sp|Q8LC83|RS242_ARATH 40S ribosomal protein S24-2 OS=Arabidopsis thaliana GN=RPS24B PE=2
SV=2
Length = 133
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 48/71 (67%), Gaps = 3/71 (4%)
Query: 9 RNLVNAGRVTFAGWVFESVESKSRFSFSFK---NGLDTKAEKSRKQLKERKNMAKKIGGV 65
R G+ + G ++++VE+ +F ++ NGLDTK EKSRKQ+KERKN AKKI GV
Sbjct: 63 RTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIRGV 122
Query: 66 KKTKASDAAKK 76
KKTKA D KK
Sbjct: 123 KKTKAGDTKKK 133
>sp|Q962Q6|RS24_SPOFR 40S ribosomal protein S24 OS=Spodoptera frugiperda GN=RpS24 PE=2
SV=1
Length = 132
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 14 AGRVTFAGWVFESVESKSRFSFSFK---NGLDTKAEKSRKQLKERKNMAKKIGGVKKTKA 70
G+ T ++++++ +F + +GL K +RKQ KERKN KK+ G KK+K
Sbjct: 67 GGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSKV 126
Query: 71 SDAAKK 76
AAKK
Sbjct: 127 GAAAKK 132
>sp|Q90YQ0|RS24_ICTPU 40S ribosomal protein S24 OS=Ictalurus punctatus GN=rps24 PE=2 SV=1
Length = 131
Score = 35.4 bits (80), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 9/69 (13%)
Query: 14 AGRVTFAGWVFESV------ESKSRFSFSFKNGLDTKAEKSRKQLKERKNMAKKIGGVKK 67
G+ T V++S+ E K R + ++GL K + SRKQ KERKN KK+ G KK
Sbjct: 66 GGKTTGFAMVYDSLDYAKKNEPKYRLA---RHGLYEKKKTSRKQRKERKNRMKKVRGTKK 122
Query: 68 TKASDAAKK 76
A KK
Sbjct: 123 ASVGAAGKK 131
>sp|O42387|RS24_TAKRU 40S ribosomal protein S24 OS=Takifugu rubripes GN=rps24 PE=3 SV=1
Length = 132
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 10/76 (13%)
Query: 9 RNLVNAGRVTFAGWVFESV------ESKSRFSFSFKNGLDTKAEKSRKQLKERKNMAKKI 62
R G+ T V++S+ E K R + ++GL K + SRKQ KERKN KK+
Sbjct: 61 RTQFGGGKTTGFAMVYDSLDYAKKNEPKHRLA---RHGLFEKKKTSRKQRKERKNRMKKV 117
Query: 63 GGVKKTKASDAAKKKE 78
G KK A+KKK+
Sbjct: 118 RGTKKASVG-ASKKKD 132
>sp|Q9W6X9|RS24_ORYLA 40S ribosomal protein S24 OS=Oryzias latipes GN=rps24 PE=2 SV=1
Length = 132
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 9 RNLVNAGRVTFAGWVFESV------ESKSRFSFSFKNGLDTKAEKSRKQLKERKNMAKKI 62
R G+ T V++S+ E K R + +GL K + SRKQ ER+N KK+
Sbjct: 61 RTQFGGGKTTGFAMVYDSLDYAKKNEPKHRLA---THGLYEKKKTSRKQRTERQNRMKKV 117
Query: 63 GGVKKTKASDAAKK 76
+KK A KK
Sbjct: 118 RSIKKASVGAAGKK 131
>sp|P62850|RS24_RAT 40S ribosomal protein S24 OS=Rattus norvegicus GN=Rps24 PE=2 SV=1
Length = 133
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 28 ESKSRFSFSFKNGLDTKAEKSRKQLKERKNMAKKIGGVKKTKASDAAKKKE 78
E K R + ++GL K + SRKQ KERKN KK+ G K K KE
Sbjct: 86 EPKHRLA---RHGLYEKKKTSRKQRKERKNRMKKVRGTAKANVGAGKKPKE 133
>sp|P62849|RS24_MOUSE 40S ribosomal protein S24 OS=Mus musculus GN=Rps24 PE=1 SV=1
Length = 133
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 28 ESKSRFSFSFKNGLDTKAEKSRKQLKERKNMAKKIGGVKKTKASDAAKKKE 78
E K R + ++GL K + SRKQ KERKN KK+ G K K KE
Sbjct: 86 EPKHRLA---RHGLYEKKKTSRKQRKERKNRMKKVRGTAKANVGAGKKPKE 133
>sp|P62848|RS24_MESAU 40S ribosomal protein S24 OS=Mesocricetus auratus GN=RPS24 PE=3
SV=1
Length = 133
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 28 ESKSRFSFSFKNGLDTKAEKSRKQLKERKNMAKKIGGVKKTKASDAAKKKE 78
E K R + ++GL K + SRKQ KERKN KK+ G K K KE
Sbjct: 86 EPKHRLA---RHGLYEKKKTSRKQRKERKNRMKKVRGTAKANVGAGKKPKE 133
>sp|P62847|RS24_HUMAN 40S ribosomal protein S24 OS=Homo sapiens GN=RPS24 PE=1 SV=1
Length = 133
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 28 ESKSRFSFSFKNGLDTKAEKSRKQLKERKNMAKKIGGVKKTKASDAAKKKE 78
E K R + ++GL K + SRKQ KERKN KK+ G K K KE
Sbjct: 86 EPKHRLA---RHGLYEKKKTSRKQRKERKNRMKKVRGTAKANVGAGKKPKE 133
>sp|P02377|RS24_XENLA 40S ribosomal protein S24 OS=Xenopus laevis GN=rps24 PE=2 SV=1
Length = 132
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 28 ESKSRFSFSFKNGLDTKAEKSRKQLKERKNMAKKIGGVKKTKASDAAKKKE 78
E K R + K+GL K + SRKQ KERKN KK+ G K A KKK+
Sbjct: 86 EPKHRLA---KHGLYEKKKTSRKQRKERKNRMKKVRGTAKANVG-AGKKKD 132
>sp|P0CX32|RS24B_YEAST 40S ribosomal protein S24-B OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPS24B PE=1 SV=1
Length = 135
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 21 GWVFESVESKSRFSFSFK---NGLDTKAEK-SRKQLKERKNMAKKIGGVKKTKASDAAKK 76
G V+ SV +F +++ GL K EK SR+Q K++KN KKI G K A A++
Sbjct: 73 GLVYNSVAEAKKFEPTYRLVRYGLAEKVEKASRQQRKQKKNRDKKIFGTGKRLAKKVARR 132
>sp|P0CX31|RS24A_YEAST 40S ribosomal protein S24-A OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPS24A PE=1 SV=1
Length = 135
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 21 GWVFESVESKSRFSFSFK---NGLDTKAEK-SRKQLKERKNMAKKIGGVKKTKASDAAKK 76
G V+ SV +F +++ GL K EK SR+Q K++KN KKI G K A A++
Sbjct: 73 GLVYNSVAEAKKFEPTYRLVRYGLAEKVEKASRQQRKQKKNRDKKIFGTGKRLAKKVARR 132
>sp|Q4R5H5|RS24_MACFA 40S ribosomal protein S24 OS=Macaca fascicularis GN=RPS24 PE=2 SV=1
Length = 131
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 28 ESKSRFSFSFKNGLDTKAEKSRKQLKERKNMAKKIGGVKKTKASDAAKK 76
E K R + ++GL K + SRKQ KERKN KK+ G K KK
Sbjct: 86 EPKHRLA---RHGLYEKKKTSRKQRKERKNRMKKVRGTAKANVGAGKKK 131
>sp|Q5RAQ8|RS24_PONAB 40S ribosomal protein S24 OS=Pongo abelii GN=RPS24 PE=2 SV=1
Length = 131
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 28 ESKSRFSFSFKNGLDTKAEKSRKQLKERKNMAKKIGGVKKTKASDAAKK 76
E K R + ++GL K + SRKQ KERKN KK+ G K KK
Sbjct: 86 EPKHRLA---RHGLYEKKKTSRKQRKERKNRMKKVRGTAKANVGAGKKK 131
>sp|Q56JU9|RS24_BOVIN 40S ribosomal protein S24 OS=Bos taurus GN=RPS24 PE=2 SV=2
Length = 131
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 28 ESKSRFSFSFKNGLDTKAEKSRKQLKERKNMAKKIGGVKKTKASDAAKK 76
E K R + ++GL K + SRKQ KERKN KK+ G K KK
Sbjct: 86 EPKHRLA---RHGLYEKKKTSRKQRKERKNRMKKVRGTAKANVGAGKKK 131
>sp|Q75K27|RS24_DICDI 40S ribosomal protein S24 OS=Dictyostelium discoideum GN=rps24 PE=3
SV=1
Length = 126
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 15 GRVTFAGWVFESVESKSRFSFSFK---NGLDTKAEKSRKQLKERKN 57
G+ T G +++++E ++ ++ GL TK + SRKQ KE+KN
Sbjct: 69 GKSTGFGLIYDNLEIAKKYEPKYRLARAGLYTKPQTSRKQRKEKKN 114
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.126 0.346
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,275,875
Number of Sequences: 539616
Number of extensions: 811247
Number of successful extensions: 3252
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 3228
Number of HSP's gapped (non-prelim): 33
length of query: 82
length of database: 191,569,459
effective HSP length: 53
effective length of query: 29
effective length of database: 162,969,811
effective search space: 4726124519
effective search space used: 4726124519
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)