Query 037293
Match_columns 82
No_of_seqs 108 out of 230
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 18:21:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037293.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037293hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz6_U 40S ribosomal protein S 100.0 1.8E-34 6.3E-39 201.8 1.4 75 2-76 60-137 (138)
2 3u5c_Y RP50, 40S ribosomal pro 100.0 1.8E-33 6.2E-38 196.2 5.6 75 2-76 54-132 (135)
3 2xzm_P RPS24E; ribosome, trans 100.0 4.6E-33 1.6E-37 196.8 4.9 77 2-78 52-131 (149)
4 1ywx_A 30S ribosomal protein S 99.8 1.1E-20 3.7E-25 126.2 4.1 43 2-44 49-94 (102)
5 1xn9_A 30S ribosomal protein S 99.8 1.8E-20 6E-25 124.8 4.3 43 2-44 49-94 (101)
6 2g1d_A 30S ribosomal protein S 99.8 1.8E-20 6.1E-25 124.2 3.8 44 2-45 50-96 (98)
7 2v94_A RPS24, 30S ribosomal pr 99.8 2.4E-20 8.3E-25 125.3 4.0 44 2-45 58-104 (107)
8 3p5t_L Cleavage and polyadenyl 68.4 3.7 0.00013 23.8 2.5 18 14-31 41-59 (90)
9 2cpf_A RNA binding motif prote 68.1 4.3 0.00015 23.6 2.8 20 13-32 45-65 (98)
10 2mss_A Protein (musashi1); RNA 67.2 4.7 0.00016 22.2 2.7 21 13-33 36-57 (75)
11 1p27_B RNA-binding protein 8A; 64.7 9.1 0.00031 22.4 3.8 20 13-32 60-80 (106)
12 2dgw_A Probable RNA-binding pr 64.2 4.9 0.00017 23.1 2.4 20 13-32 45-65 (91)
13 2krb_A Eukaryotic translation 64.0 4.1 0.00014 23.0 2.0 19 14-32 43-62 (81)
14 2x1f_A MRNA 3'-END-processing 62.9 8.3 0.00028 22.4 3.3 20 13-32 39-59 (96)
15 1x4e_A RNA binding motif, sing 62.9 7.6 0.00026 21.9 3.1 20 13-32 42-62 (85)
16 2cqg_A TDP-43, TAR DNA-binding 62.0 10 0.00036 22.1 3.7 19 14-32 53-72 (103)
17 4fxv_A ELAV-like protein 1; RN 61.8 11 0.00037 22.6 3.8 20 13-32 56-76 (99)
18 2lxi_A RNA-binding protein 10; 61.7 4 0.00014 24.1 1.7 20 13-32 39-59 (91)
19 1fjc_A Nucleolin RBD2, protein 60.8 7.6 0.00026 22.4 2.9 19 14-32 49-68 (96)
20 3bs9_A Nucleolysin TIA-1 isofo 60.0 13 0.00046 20.7 3.8 20 13-32 43-63 (87)
21 1u6f_A Tcubp1, RNA-binding pro 59.3 12 0.00042 23.0 3.8 20 13-32 79-99 (139)
22 2dnh_A Bruno-like 5, RNA bindi 59.2 7.2 0.00025 22.9 2.6 19 14-32 52-71 (105)
23 3ns6_A Eukaryotic translation 58.2 6.5 0.00022 23.4 2.3 19 14-32 50-69 (100)
24 3s8s_A Histone-lysine N-methyl 58.2 13 0.00045 22.7 3.8 19 14-32 44-63 (110)
25 2cqp_A RNA-binding protein 12; 58.1 8 0.00028 22.4 2.6 20 13-32 52-72 (98)
26 3md1_A Nuclear and cytoplasmic 58.0 16 0.00054 20.2 3.8 20 13-32 38-58 (83)
27 1p1t_A Cleavage stimulation fa 58.0 11 0.00038 21.9 3.3 19 14-32 46-65 (104)
28 1oo0_B CG8781-PA, drosophila Y 57.5 11 0.00038 22.3 3.2 20 13-32 63-83 (110)
29 3s7r_A Heterogeneous nuclear r 57.4 14 0.00048 20.8 3.6 19 14-32 49-68 (87)
30 2dnl_A Cytoplasmic polyadenyla 57.3 5 0.00017 24.4 1.7 18 15-32 49-67 (114)
31 2cqc_A Arginine/serine-rich sp 57.2 15 0.00051 20.9 3.7 20 13-32 52-72 (95)
32 1s79_A Lupus LA protein; RRM, 57.1 10 0.00034 23.1 3.0 18 15-32 49-67 (103)
33 2ek1_A RNA-binding protein 12; 56.6 8.7 0.0003 22.0 2.6 20 13-32 52-72 (95)
34 2ywk_A Putative RNA-binding pr 56.6 7.8 0.00027 22.2 2.4 18 15-32 54-72 (95)
35 1iqt_A AUF1, heterogeneous nuc 56.5 6.3 0.00022 21.6 1.9 20 13-32 36-56 (75)
36 2la6_A RNA-binding protein FUS 56.5 8.2 0.00028 22.5 2.5 20 13-32 58-78 (99)
37 2dh8_A DAZ-associated protein 56.3 12 0.00043 21.8 3.3 20 13-32 53-73 (105)
38 2do4_A Squamous cell carcinoma 56.2 15 0.00052 21.2 3.7 19 14-32 54-73 (100)
39 3ulh_A THO complex subunit 4; 55.5 16 0.00054 21.4 3.7 19 14-32 66-85 (107)
40 2cq0_A Eukaryotic translation 55.5 16 0.00054 21.3 3.7 19 14-32 53-72 (103)
41 2fc8_A NCL protein; structure 55.4 7.9 0.00027 22.6 2.3 20 13-32 49-69 (102)
42 2dgv_A HnRNP M, heterogeneous 55.3 9.4 0.00032 21.7 2.6 19 14-32 44-63 (92)
43 2dnz_A Probable RNA-binding pr 54.8 13 0.00044 21.2 3.2 19 14-32 43-62 (95)
44 2db1_A Heterogeneous nuclear r 54.5 8.7 0.0003 23.6 2.5 18 15-32 58-76 (118)
45 1jmt_A Splicing factor U2AF 35 54.3 8.4 0.00029 23.5 2.4 18 15-32 65-83 (104)
46 2d9p_A Polyadenylate-binding p 54.1 15 0.00052 21.4 3.5 19 14-32 51-70 (103)
47 1wez_A HnRNP H', FTP-3, hetero 53.5 7.6 0.00026 23.4 2.0 18 14-31 51-69 (102)
48 2dgs_A DAZ-associated protein 53.3 13 0.00046 21.5 3.1 19 14-32 48-67 (99)
49 2dhg_A TRNA selenocysteine ass 53.2 18 0.00063 21.0 3.7 19 14-32 47-66 (104)
50 2dha_A FLJ20171 protein; RRM d 52.1 9.4 0.00032 24.3 2.4 18 14-31 64-82 (123)
51 2div_A TRNA selenocysteine ass 52.0 10 0.00036 21.9 2.4 20 13-32 47-67 (99)
52 2j76_E EIF-4B, EIF4B, eukaryot 51.8 6.9 0.00023 23.1 1.6 19 14-32 57-76 (100)
53 3md3_A Nuclear and cytoplasmic 51.5 20 0.0007 21.7 3.8 20 13-32 124-144 (166)
54 1whw_A Hypothetical protein ri 51.2 16 0.00054 21.1 3.2 19 14-32 46-65 (99)
55 2cpe_A RNA-binding protein EWS 51.2 8 0.00027 23.0 1.9 20 13-32 60-80 (113)
56 1uaw_A Mouse-musashi-1; RNP-ty 50.9 9.1 0.00031 21.0 2.0 18 14-31 38-56 (77)
57 3n9u_C Cleavage and polyadenyl 50.7 21 0.00071 23.3 4.0 19 14-32 95-114 (156)
58 2dgo_A Cytotoxic granule-assoc 50.5 22 0.00075 21.1 3.8 20 13-32 52-72 (115)
59 2jrs_A RNA-binding protein 39; 50.4 22 0.00075 21.3 3.8 20 13-32 63-83 (108)
60 1x5u_A Splicing factor 3B subu 50.0 14 0.00047 21.6 2.8 19 14-32 53-72 (105)
61 1l3k_A Heterogeneous nuclear r 49.6 21 0.00072 22.5 3.8 20 13-32 141-161 (196)
62 1x5t_A Splicing factor 3B subu 49.1 8.9 0.00031 22.0 1.8 20 13-32 43-63 (96)
63 1wel_A RNA-binding protein 12; 49.1 9.5 0.00033 23.3 2.0 18 14-31 63-81 (124)
64 1wi8_A EIF-4B, eukaryotic tran 49.0 7.8 0.00027 22.8 1.5 18 15-32 54-72 (104)
65 2fy1_A RNA-binding motif prote 49.0 8.3 0.00028 23.6 1.7 19 14-32 44-63 (116)
66 3ucg_A Polyadenylate-binding p 48.9 19 0.00064 20.2 3.2 20 13-32 43-63 (89)
67 2cqd_A RNA-binding region cont 48.8 17 0.00059 21.7 3.1 19 14-32 55-74 (116)
68 2lmi_A GRSF-1, G-rich sequence 48.6 7.5 0.00026 23.3 1.4 18 15-32 52-70 (107)
69 2hgl_A HNRPF protein, heteroge 48.6 11 0.00039 24.3 2.4 17 15-31 85-102 (136)
70 1fj7_A Nucleolin RBD1, protein 48.5 5.9 0.0002 23.2 0.9 18 15-32 55-73 (101)
71 2fc9_A NCL protein; structure 48.5 9.1 0.00031 22.3 1.8 19 14-32 49-68 (101)
72 2cpx_A Hypothetical protein FL 48.3 8.2 0.00028 23.0 1.6 19 14-32 63-82 (115)
73 1wg5_A Heterogeneous nuclear r 48.3 9.9 0.00034 22.6 2.0 19 14-32 53-72 (104)
74 2dis_A Unnamed protein product 48.0 9.8 0.00033 22.4 1.9 21 12-32 46-67 (109)
75 1b7f_A Protein (SXL-lethal pro 48.0 14 0.00048 22.7 2.7 19 14-32 127-146 (168)
76 1x5s_A Cold-inducible RNA-bind 47.7 14 0.00047 21.5 2.5 20 13-32 49-69 (102)
77 2lkz_A RNA-binding protein 5; 47.5 7.4 0.00025 23.5 1.3 18 14-31 49-67 (95)
78 2cpz_A CUG triplet repeat RNA- 47.5 18 0.00063 21.5 3.1 19 14-32 63-82 (115)
79 2rs2_A Musashi-1, RNA-binding 47.5 13 0.00045 22.4 2.4 19 14-32 63-82 (109)
80 2ki2_A SS-DNA binding protein 47.4 17 0.00058 20.6 2.8 21 14-34 39-60 (90)
81 2e5h_A Zinc finger CCHC-type a 47.2 14 0.00048 21.0 2.4 19 14-32 54-73 (94)
82 2xs2_A Deleted in azoospermia- 47.1 14 0.00049 21.5 2.5 18 14-31 46-64 (102)
83 1x4b_A Heterogeneous nuclear r 46.7 14 0.00049 22.1 2.5 20 13-32 64-84 (116)
84 2dng_A Eukaryotic translation 46.4 25 0.00086 20.4 3.6 20 14-33 52-72 (103)
85 2hgm_A HNRPF protein, heteroge 46.2 7.8 0.00027 25.0 1.3 17 15-31 81-98 (126)
86 1x4h_A RNA-binding protein 28; 46.1 22 0.00075 20.8 3.3 19 14-32 53-72 (111)
87 2cq4_A RNA binding motif prote 45.1 17 0.00058 21.6 2.7 19 14-32 63-82 (114)
88 1fxl_A Paraneoplastic encephal 45.0 29 0.00099 21.0 3.8 19 14-32 40-59 (167)
89 2ku7_A MLL1 PHD3-CYP33 RRM chi 45.0 22 0.00075 21.6 3.2 20 13-32 100-120 (140)
90 2cph_A RNA binding motif prote 44.9 21 0.00071 20.8 3.0 19 14-32 54-73 (107)
91 2dnm_A SRP46 splicing factor; 44.8 13 0.00043 21.7 2.0 19 14-32 51-70 (103)
92 2do0_A HnRNP M, heterogeneous 44.8 16 0.00054 21.6 2.5 18 15-32 53-71 (114)
93 1x5o_A RNA binding motif, sing 44.6 30 0.001 20.4 3.7 19 14-32 62-81 (114)
94 2nlw_A Eukaryotic translation 44.6 8.6 0.0003 22.9 1.2 18 14-31 57-75 (105)
95 1h2v_Z 20 kDa nuclear CAP bind 44.4 28 0.00097 21.9 3.8 19 14-32 77-96 (156)
96 3ex7_B RNA-binding protein 8A; 43.9 19 0.00066 21.7 2.8 19 14-32 60-79 (126)
97 2khc_A Testis-specific RNP-typ 43.8 17 0.00057 21.7 2.5 19 14-32 78-97 (118)
98 2kxn_B Transformer-2 protein h 43.5 24 0.00082 22.1 3.3 20 13-32 83-103 (129)
99 2pe8_A Splicing factor 45; RRM 43.4 13 0.00045 22.8 2.0 18 14-31 52-70 (105)
100 2b8i_A PAS factor; four helix 43.0 1.3 4.5E-05 28.0 -2.7 24 21-44 7-34 (77)
101 3mdf_A Peptidyl-prolyl CIS-tra 42.1 29 0.001 19.1 3.2 20 13-32 44-64 (85)
102 2cqb_A Peptidyl-prolyl CIS-tra 41.6 19 0.00063 20.9 2.4 20 13-32 49-69 (102)
103 4a8x_A RNA-binding protein wit 41.5 12 0.00042 20.9 1.5 18 15-32 44-62 (88)
104 1rk8_A CG8781-PA, CG8781-PA pr 41.5 32 0.0011 22.0 3.7 20 13-32 109-129 (165)
105 2dgp_A Bruno-like 4, RNA bindi 41.1 22 0.00076 20.7 2.7 19 14-32 51-70 (106)
106 2kt5_A RNA and export factor-b 40.5 20 0.0007 21.7 2.6 19 14-32 72-91 (124)
107 2cpy_A RNA-binding protein 12; 40.5 10 0.00035 22.9 1.1 19 14-32 53-72 (114)
108 2dnn_A RNA-binding protein 12; 39.8 14 0.00047 22.9 1.7 17 15-31 53-70 (109)
109 1nu4_A U1A RNA binding domain; 38.1 7.2 0.00025 22.5 0.1 18 15-32 48-66 (97)
110 3egn_A RNA-binding protein 40; 38.0 17 0.00057 22.6 1.9 18 14-31 88-106 (143)
111 2jwn_A Embryonic polyadenylate 36.9 39 0.0013 20.2 3.4 20 13-32 73-93 (124)
112 2cpi_A CCR4-NOT transcription 36.6 23 0.00078 21.2 2.3 16 16-31 61-77 (111)
113 2kn4_A Immunoglobulin G-bindin 36.5 29 0.00098 21.7 2.9 19 14-32 108-127 (158)
114 4f25_A Polyadenylate-binding p 35.6 27 0.00092 21.1 2.5 18 15-32 42-60 (115)
115 2cq3_A RNA-binding protein 9; 35.1 26 0.00088 20.3 2.3 16 17-32 54-70 (103)
116 2qfj_A FBP-interacting repress 35.0 48 0.0016 21.1 3.8 19 14-32 163-182 (216)
117 2g4b_A Splicing factor U2AF 65 34.5 40 0.0014 20.7 3.3 19 14-32 132-151 (172)
118 3ue2_A Poly(U)-binding-splicin 34.0 36 0.0012 21.4 3.0 20 13-32 66-86 (118)
119 3nmr_A Cugbp ELAV-like family 32.7 57 0.002 19.9 3.8 18 15-32 44-62 (175)
120 2err_A Ataxin-2-binding protei 32.6 18 0.00062 21.7 1.4 17 16-32 67-84 (109)
121 2a3j_A U1 small nuclear ribonu 32.2 20 0.00069 22.8 1.6 18 14-31 68-86 (127)
122 2cjk_A Nuclear polyadenylated 32.1 32 0.0011 21.1 2.5 19 13-31 40-59 (167)
123 2lcw_A RNA-binding protein FUS 37.5 10 0.00035 22.8 0.0 20 13-32 52-72 (116)
124 2e5j_A Methenyltetrahydrofolat 31.2 15 0.00051 21.3 0.7 17 16-32 54-71 (97)
125 3sde_A Paraspeckle component 1 31.0 33 0.0011 23.5 2.6 18 14-31 133-151 (261)
126 3d2w_A TAR DNA-binding protein 30.0 27 0.00091 20.3 1.8 17 17-33 47-64 (89)
127 1fje_B Nucleolin RBD12, protei 28.7 26 0.00088 21.8 1.6 19 14-32 132-151 (175)
128 1x4a_A Splicing factor, argini 28.7 24 0.00084 20.7 1.4 18 15-32 58-76 (109)
129 2cqi_A Nucleolysin TIAR; RNA r 27.6 45 0.0015 19.2 2.5 16 17-32 54-70 (103)
130 3smz_A Protein raver-1, ribonu 27.6 37 0.0013 23.0 2.4 19 14-32 222-241 (284)
131 2yh0_A Splicing factor U2AF 65 27.5 52 0.0018 20.6 3.0 18 14-31 152-170 (198)
132 3q2s_C Cleavage and polyadenyl 27.2 59 0.002 22.3 3.4 19 14-32 108-127 (229)
133 2hgn_A Heterogeneous nuclear r 27.1 13 0.00046 24.1 0.0 18 15-32 83-101 (139)
134 2cqh_A IGF-II mRNA-binding pro 26.8 31 0.0011 19.6 1.6 17 16-32 42-59 (93)
135 2d9o_A DNAJ (HSP40) homolog, s 26.3 33 0.0011 21.0 1.7 17 15-31 51-68 (100)
136 3dxb_A Thioredoxin N-terminall 26.3 78 0.0027 20.9 3.8 20 13-32 170-190 (222)
137 1x5p_A Negative elongation fac 25.6 23 0.0008 20.4 0.9 17 16-32 47-64 (97)
138 2lea_A Serine/arginine-rich sp 25.5 31 0.0011 21.6 1.5 19 14-32 85-104 (135)
139 2voo_A Lupus LA protein; RNA-b 25.4 47 0.0016 22.2 2.6 18 15-32 147-165 (193)
140 3lqv_A PRE-mRNA branch site pr 24.8 23 0.00078 21.0 0.8 17 15-31 44-61 (115)
141 2f3j_A RNA and export factor b 24.3 45 0.0015 22.0 2.3 19 14-32 125-144 (177)
142 4f02_A Polyadenylate-binding p 23.7 95 0.0032 20.3 3.8 20 13-32 52-72 (213)
143 2pt5_A Shikimate kinase, SK; a 22.3 22 0.00075 22.0 0.3 15 1-18 1-15 (168)
144 2la4_A Nuclear and cytoplasmic 22.3 30 0.001 20.0 0.9 17 16-32 61-78 (101)
145 1wf0_A TDP-43, TAR DNA-binding 21.5 27 0.00094 19.7 0.6 17 17-33 41-58 (88)
146 1wg1_A KIAA1579 protein, homol 21.3 37 0.0013 19.2 1.2 16 16-31 38-54 (88)
147 2ghp_A U4/U6 snRNA-associated 20.6 55 0.0019 22.3 2.2 19 15-33 251-270 (292)
No 1
>3iz6_U 40S ribosomal protein S24 (S24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.98 E-value=1.8e-34 Score=201.81 Aligned_cols=75 Identities=48% Similarity=0.645 Sum_probs=39.4
Q ss_pred CeeeecccccCCCCeeeeEEEeecCHHHHhhcccc---cccCCcccccchhHHHHHHhhhhhhccchhhhhcchHHhh
Q 037293 2 PLPVNDHRNLVNAGRVTFAGWVFESVESKSRFSFS---FKNGLDTKAEKSRKQLKERKNMAKKIGGVKKTKASDAAKK 76 (82)
Q Consensus 2 ~I~VfgfrT~FGggkstGfa~IYDs~d~akk~Epk---~Rngl~ek~k~~Rkq~Ke~knr~KKvrGt~k~k~~~~~kk 76 (82)
+||||||+|+||+|+|+|||+||||+|+|++|||+ +||+|+|+.++||+|+||++||+||+|||+|+++++++++
T Consensus 60 ~VvV~g~rT~fGggkstGfa~IYds~d~aKk~EPkyrL~R~gl~ek~~~srk~~ke~knr~kk~rGt~k~~~~~~~~~ 137 (138)
T 3iz6_U 60 CIFVFKFRTHFGGGKSTGFGLIYDNLDAAKKYEPKYRLIRNGLATKVEKSRKQMKERKNRAKKIRGVKKTKAGDAGKK 137 (138)
T ss_dssp SCCCCCCCCCSSCSCCCCCCCCSSCHHHHHSSCCCBTTTTTCC-----------------------------------
T ss_pred EEEEEeeEecCCCceEEEEEEEeCCHHHHHhcCchheEeeccccccccccHHHHHHHHhcchhhcchheeeccccccC
Confidence 59999999999999999999999999999999999 9999999988899999999999999999999999988755
No 2
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=99.98 E-value=1.8e-33 Score=196.15 Aligned_cols=75 Identities=35% Similarity=0.456 Sum_probs=71.3
Q ss_pred CeeeecccccCCCCeeeeEEEeecCHHHHhhcccc---cccCCcccccc-hhHHHHHHhhhhhhccchhhhhcchHHhh
Q 037293 2 PLPVNDHRNLVNAGRVTFAGWVFESVESKSRFSFS---FKNGLDTKAEK-SRKQLKERKNMAKKIGGVKKTKASDAAKK 76 (82)
Q Consensus 2 ~I~VfgfrT~FGggkstGfa~IYDs~d~akk~Epk---~Rngl~ek~k~-~Rkq~Ke~knr~KKvrGt~k~k~~~~~kk 76 (82)
.||||||+|+||+|+|+|||+||||+|+|++|||+ +||+|+|+.++ ||+|+||+|||+||+|||+|++++++.++
T Consensus 54 ~VvV~g~rT~fG~gkstGfa~IYds~d~akk~EPkyrL~R~gl~ek~~~~srk~~ke~knr~kk~rGt~k~~~~~~~~~ 132 (135)
T 3u5c_Y 54 AVSVFGFRTQFGGGKSVGFGLVYNSVAEAKKFEPTYRLVRYGLAEKVEKASRQQRKQKKNRDKKIFGTGKRLAKKVARR 132 (135)
T ss_dssp GEEEEEEEECTTSSEEEEEEEEESSHHHHHHHSCHHHHHHHTSSCCCCCSCHHHHHHHHHHHHTCCSCSHHHHHHHHHH
T ss_pred EEEEEeeEeccCCceEEEEEEEeCCHHHHHhcCchheEeeccccccccCccHHHHHHHHhcchhhcchhhhhccccccc
Confidence 59999999999999999999999999999999999 99999999885 99999999999999999999999877654
No 3
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=99.97 E-value=4.6e-33 Score=196.79 Aligned_cols=77 Identities=18% Similarity=0.173 Sum_probs=73.0
Q ss_pred CeeeecccccCCCCeeeeEEEeecCHHHHhhcccc---cccCCcccccchhHHHHHHhhhhhhccchhhhhcchHHhhhc
Q 037293 2 PLPVNDHRNLVNAGRVTFAGWVFESVESKSRFSFS---FKNGLDTKAEKSRKQLKERKNMAKKIGGVKKTKASDAAKKKE 78 (82)
Q Consensus 2 ~I~VfgfrT~FGggkstGfa~IYDs~d~akk~Epk---~Rngl~ek~k~~Rkq~Ke~knr~KKvrGt~k~k~~~~~kk~~ 78 (82)
+||||||+|+||+|+|+|||+||||+|+|++|||+ +||+|.|+.++||+|+||++||+||+|||+|++++++++++.
T Consensus 52 ~VvV~g~rT~fGggkStGfa~IYDs~e~aKk~EPkyrL~Rngl~ek~~~sRkqrKe~knr~kkvrGt~k~~~~~~~k~~~ 131 (149)
T 2xzm_P 52 NVVVYGFSTQYGGGKSTGFALVYDNQQYLLKYEPNYRLRKVKILGEKPNTRRSFKELKRKIKRTSGKAITKLLSEKKGDT 131 (149)
T ss_dssp GEEEEEECCCSSSSEEEEEEEEESCHHHHHHHSCHHHHHHTTSSCCCCCHHHHHHHHHHHHTTSCHHHHHHHHTTSCSCC
T ss_pred EEEEEeeEecCCCceEEEEEEEeCCHHHHHhhCchheeeeccccccccCcHHHHHHHHhhhhhhcchhhhhcccccccch
Confidence 59999999999999999999999999999999999 999999998889999999999999999999999988777643
No 4
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=99.81 E-value=1.1e-20 Score=126.19 Aligned_cols=43 Identities=9% Similarity=0.081 Sum_probs=41.5
Q ss_pred CeeeecccccCCCCeeeeEEEeecCHHHHhhcccc---cccCCccc
Q 037293 2 PLPVNDHRNLVNAGRVTFAGWVFESVESKSRFSFS---FKNGLDTK 44 (82)
Q Consensus 2 ~I~VfgfrT~FGggkstGfa~IYDs~d~akk~Epk---~Rngl~ek 44 (82)
+||||||+|+||+|+|+|||+||||+|+|++|||+ +||++.++
T Consensus 49 ~Vvv~~~~T~fG~gkstG~a~IYds~e~akk~Epky~L~R~gl~e~ 94 (102)
T 1ywx_A 49 VLVVDTLDQIFGKLEAEGYAKIYNDEKAMATIETKSVLEKNKIEEE 94 (102)
T ss_dssp TEEEEEEEECSSSSEEEEEEEECSCHHHHHHSSCHHHHHHSCSCCC
T ss_pred EEEEEccEecCCCceEEEEEEEECCHHHHHhhCchhheeecCccch
Confidence 69999999999999999999999999999999999 99999875
No 5
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=99.80 E-value=1.8e-20 Score=124.84 Aligned_cols=43 Identities=7% Similarity=0.032 Sum_probs=41.5
Q ss_pred CeeeecccccCCCCeeeeEEEeecCHHHHhhcccc---cccCCccc
Q 037293 2 PLPVNDHRNLVNAGRVTFAGWVFESVESKSRFSFS---FKNGLDTK 44 (82)
Q Consensus 2 ~I~VfgfrT~FGggkstGfa~IYDs~d~akk~Epk---~Rngl~ek 44 (82)
+||||||+|+||+|+|+|||+||||+|+|++|||+ +||++.++
T Consensus 49 ~Vvv~~~~t~fG~gkstG~a~IYds~e~akk~Epky~L~R~g~~e~ 94 (101)
T 1xn9_A 49 LLVIQRIKTEYGMQESKGYAKLYEDADRMKQVEQEYVLKRNAVPGS 94 (101)
T ss_dssp TEEEEEEEECSSSSEEEEEEEECSCHHHHHHHHTGGGCCCCSCCCC
T ss_pred EEEEEeeEecCCCceEEEEEEEECCHHHHHhhCchheeeecCcccc
Confidence 69999999999999999999999999999999999 99999876
No 6
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=99.80 E-value=1.8e-20 Score=124.23 Aligned_cols=44 Identities=16% Similarity=0.243 Sum_probs=41.9
Q ss_pred CeeeecccccCCCCeeeeEEEeecCHHHHhhcccc---cccCCcccc
Q 037293 2 PLPVNDHRNLVNAGRVTFAGWVFESVESKSRFSFS---FKNGLDTKA 45 (82)
Q Consensus 2 ~I~VfgfrT~FGggkstGfa~IYDs~d~akk~Epk---~Rngl~ek~ 45 (82)
+||||||+|+||+|+|+|||+||||+|+|++|||+ +||++.+++
T Consensus 50 ~vvv~~~~t~fG~gks~G~a~IYds~e~~kk~Epky~l~R~~~~~~~ 96 (98)
T 2g1d_A 50 LVIVDNNKQLTGKHEIEGYTKIYADKPSAMLYEPDYELIRNGLKQKE 96 (98)
T ss_dssp TEECCCCCCCSSSSEEEEEEEEESHHHHHHHHCTTSCSCSSCCCSSC
T ss_pred EEEEEeeEecCCCceEEEEEEEECCHHHHHhhCcceeeeecCccccc
Confidence 69999999999999999999999999999999999 999998763
No 7
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=99.80 E-value=2.4e-20 Score=125.30 Aligned_cols=44 Identities=7% Similarity=-0.001 Sum_probs=39.2
Q ss_pred CeeeecccccCCCCeeeeEEEeecCHHHHhhcccc---cccCCcccc
Q 037293 2 PLPVNDHRNLVNAGRVTFAGWVFESVESKSRFSFS---FKNGLDTKA 45 (82)
Q Consensus 2 ~I~VfgfrT~FGggkstGfa~IYDs~d~akk~Epk---~Rngl~ek~ 45 (82)
+||||||+|+||+|+|+|||+||||+|+|++|||+ +||++.+++
T Consensus 58 ~Vvv~~~~T~fG~gkstG~a~IYds~e~akk~Epky~L~R~g~~e~~ 104 (107)
T 2v94_A 58 TTVIQYIRSYFGSYKSKGYAKYYYDKDRMLYIEPEYILIRDGIIEKK 104 (107)
T ss_dssp GEEEEEEECCTTCSEEEEEEEEESSHHHHHHHSCHHHHHHTTC----
T ss_pred EEEEEeeEecCCCceEEEEEEEECCHHHHHhhCchheeeecCccccc
Confidence 58999999999999999999999999999999999 999998764
No 8
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=68.39 E-value=3.7 Score=23.80 Aligned_cols=18 Identities=22% Similarity=0.088 Sum_probs=13.6
Q ss_pred CCeeeeEEEe-ecCHHHHh
Q 037293 14 AGRVTFAGWV-FESVESKS 31 (82)
Q Consensus 14 ggkstGfa~I-YDs~d~ak 31 (82)
.|++.|||.| |+|.++|.
T Consensus 41 ~g~~kG~afV~f~~~~~a~ 59 (90)
T 3p5t_L 41 NGQSKGFALVGVGSEASSK 59 (90)
T ss_dssp TCCEEEEEEECC-CHHHHH
T ss_pred CCccCcEEEEEECCHHHHH
Confidence 6889999998 77777664
No 9
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=68.13 E-value=4.3 Score=23.58 Aligned_cols=20 Identities=15% Similarity=0.157 Sum_probs=15.4
Q ss_pred CCCeeeeEEEe-ecCHHHHhh
Q 037293 13 NAGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 13 GggkstGfa~I-YDs~d~akk 32 (82)
|.+.+.|||.| |+|.++|..
T Consensus 45 gt~~~~g~afV~f~~~~~a~~ 65 (98)
T 2cpf_A 45 GVLLSMGFGFVEYKKPEQAQK 65 (98)
T ss_dssp CCEEEEEEEEEEESSHHHHHH
T ss_pred CCcCcccEEEEEECCHHHHHH
Confidence 45689999988 778777654
No 10
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=67.15 E-value=4.7 Score=22.24 Aligned_cols=21 Identities=29% Similarity=0.370 Sum_probs=16.1
Q ss_pred CCCeeeeEEEe-ecCHHHHhhc
Q 037293 13 NAGRVTFAGWV-FESVESKSRF 33 (82)
Q Consensus 13 GggkstGfa~I-YDs~d~akk~ 33 (82)
..|++.|||.| |+|.++|...
T Consensus 36 ~~~~~~g~afV~f~~~~~a~~a 57 (75)
T 2mss_A 36 TTNRHRGFGFVTFESEDIVEKV 57 (75)
T ss_dssp SSTTSCBEEEEECSCHHHHHHH
T ss_pred CCCCcCcEEEEEECCHHHHHHH
Confidence 36788999987 7888877653
No 11
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=64.73 E-value=9.1 Score=22.43 Aligned_cols=20 Identities=15% Similarity=0.194 Sum_probs=15.2
Q ss_pred CCCeeeeEEEe-ecCHHHHhh
Q 037293 13 NAGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 13 GggkstGfa~I-YDs~d~akk 32 (82)
..|.+.|||.| |+|.+.|..
T Consensus 60 ~~~~~~g~afV~f~~~~~a~~ 80 (106)
T 1p27_B 60 RTGYLKGYTLVEYETYKEAQA 80 (106)
T ss_dssp TTSSEEEEEEEEESCHHHHHH
T ss_pred CCCceeeEEEEEECCHHHHHH
Confidence 45788999988 888777654
No 12
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.17 E-value=4.9 Score=23.10 Aligned_cols=20 Identities=25% Similarity=0.195 Sum_probs=14.7
Q ss_pred CCCeeeeEEEe-ecCHHHHhh
Q 037293 13 NAGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 13 GggkstGfa~I-YDs~d~akk 32 (82)
..|++.|||.| |+|.+.|.+
T Consensus 45 ~~g~~~g~afV~f~~~~~a~~ 65 (91)
T 2dgw_A 45 AHGNKTGYIFVDFSNEEEVKQ 65 (91)
T ss_dssp TTSCEEEEEEEECSSHHHHHH
T ss_pred CCCCCceEEEEEECCHHHHHH
Confidence 46789999988 677766543
No 13
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=63.96 E-value=4.1 Score=23.05 Aligned_cols=19 Identities=11% Similarity=0.111 Sum_probs=14.4
Q ss_pred CCeeeeEEEe-ecCHHHHhh
Q 037293 14 AGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 14 ggkstGfa~I-YDs~d~akk 32 (82)
.|++.|||.| |+|.++|..
T Consensus 43 ~g~~~g~afV~f~~~~~A~~ 62 (81)
T 2krb_A 43 DGKTKGYIFLEYASPAHAVD 62 (81)
T ss_dssp TTBCCCEEEEEESSHHHHHH
T ss_pred CCcEeEEEEEEECCHHHHHH
Confidence 4678899987 788877653
No 14
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=62.94 E-value=8.3 Score=22.36 Aligned_cols=20 Identities=25% Similarity=0.468 Sum_probs=15.2
Q ss_pred CCCeeeeEEEe-ecCHHHHhh
Q 037293 13 NAGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 13 GggkstGfa~I-YDs~d~akk 32 (82)
..|.+.|||.| |+|.++|..
T Consensus 39 ~~g~~~g~afV~f~~~~~A~~ 59 (96)
T 2x1f_A 39 QTGRSKGYAFIEFRDLESSAS 59 (96)
T ss_dssp TTCCBCSEEEEEESSHHHHHH
T ss_pred CCCccceEEEEEECCHHHHHH
Confidence 35788999987 888877653
No 15
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=62.89 E-value=7.6 Score=21.86 Aligned_cols=20 Identities=20% Similarity=0.408 Sum_probs=15.0
Q ss_pred CCCeeeeEEEe-ecCHHHHhh
Q 037293 13 NAGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 13 GggkstGfa~I-YDs~d~akk 32 (82)
..|.+.|||.| |+|.++|..
T Consensus 42 ~~~~~~g~afV~f~~~~~a~~ 62 (85)
T 1x4e_A 42 TTNKCKGYGFVDFDSPSAAQK 62 (85)
T ss_dssp SSCSCCSEEEEEESCHHHHHH
T ss_pred CCCCcCcEEEEEECCHHHHHH
Confidence 35778899987 888877754
No 16
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=61.99 E-value=10 Score=22.12 Aligned_cols=19 Identities=26% Similarity=0.480 Sum_probs=14.8
Q ss_pred CCeeeeEEEe-ecCHHHHhh
Q 037293 14 AGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 14 ggkstGfa~I-YDs~d~akk 32 (82)
.|.+.|||.| |++.+.|..
T Consensus 53 ~g~~~g~afV~f~~~~~a~~ 72 (103)
T 2cqg_A 53 TGHSKGFGFVRFTEYETQVK 72 (103)
T ss_dssp SCSEEEEEEEEESSHHHHHH
T ss_pred CCCccceEEEEECCHHHHHH
Confidence 4788999987 788777654
No 17
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=61.80 E-value=11 Score=22.58 Aligned_cols=20 Identities=25% Similarity=0.373 Sum_probs=15.5
Q ss_pred CCCeeeeEEEe-ecCHHHHhh
Q 037293 13 NAGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 13 GggkstGfa~I-YDs~d~akk 32 (82)
..|.+.|||.| |+|.++|.+
T Consensus 56 ~tg~~kG~afV~f~~~~~A~~ 76 (99)
T 4fxv_A 56 VAGHSLGYGFVNYVTAKDAER 76 (99)
T ss_dssp SSCCEEEEEEEEESSHHHHHH
T ss_pred CCCcccccEEEEECCHHHHHH
Confidence 35788999988 888887754
No 18
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=61.68 E-value=4 Score=24.07 Aligned_cols=20 Identities=20% Similarity=0.429 Sum_probs=15.6
Q ss_pred CCCeeeeEEEe-ecCHHHHhh
Q 037293 13 NAGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 13 GggkstGfa~I-YDs~d~akk 32 (82)
..|.+.|||.| |+|.++|.+
T Consensus 39 ~t~~~rg~aFV~F~~~~~A~~ 59 (91)
T 2lxi_A 39 SSGQSRGFAFVEFSHLQDATR 59 (91)
T ss_dssp SSCCCSSEEEEECSSHHHHHH
T ss_pred CCCCcCceEEEEecCHHHHHH
Confidence 45788899987 888887765
No 19
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=60.82 E-value=7.6 Score=22.38 Aligned_cols=19 Identities=16% Similarity=0.375 Sum_probs=14.6
Q ss_pred CCeeeeEEEe-ecCHHHHhh
Q 037293 14 AGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 14 ggkstGfa~I-YDs~d~akk 32 (82)
.|.+.|||.| |+|.++|..
T Consensus 49 ~~~~~g~afV~f~~~~~a~~ 68 (96)
T 1fjc_A 49 DGKSKGIAYIEFKSEADAEK 68 (96)
T ss_dssp TTEEEEEEEEEESSHHHHHH
T ss_pred CCCcceEEEEEECCHHHHHH
Confidence 5788999988 777777654
No 20
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=60.02 E-value=13 Score=20.72 Aligned_cols=20 Identities=20% Similarity=0.227 Sum_probs=14.8
Q ss_pred CCCeeeeEEEe-ecCHHHHhh
Q 037293 13 NAGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 13 GggkstGfa~I-YDs~d~akk 32 (82)
..|.+.|||.| |+|.++|..
T Consensus 43 ~~~~~~g~afV~f~~~~~A~~ 63 (87)
T 3bs9_A 43 ATGKSKGYGFVSFFNKWDAEN 63 (87)
T ss_dssp TTCCEEEEEEEEESSHHHHHH
T ss_pred CCCccceEEEEEECCHHHHHH
Confidence 36788999987 777777654
No 21
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=59.32 E-value=12 Score=23.04 Aligned_cols=20 Identities=25% Similarity=0.307 Sum_probs=15.6
Q ss_pred CCCeeeeEEEe-ecCHHHHhh
Q 037293 13 NAGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 13 GggkstGfa~I-YDs~d~akk 32 (82)
..|++.|||.| |+|.++|..
T Consensus 79 ~~~~~~g~afV~f~~~~~a~~ 99 (139)
T 1u6f_A 79 ETRQSRGYGFVKFQSGSSAQQ 99 (139)
T ss_dssp TTTEEEEEEEEEESSHHHHHH
T ss_pred CCCCcceEEEEEECCHHHHHH
Confidence 35889999987 888887654
No 22
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=59.21 E-value=7.2 Score=22.87 Aligned_cols=19 Identities=21% Similarity=0.260 Sum_probs=14.5
Q ss_pred CCeeeeEEEe-ecCHHHHhh
Q 037293 14 AGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 14 ggkstGfa~I-YDs~d~akk 32 (82)
.|.+.|||.| |+|.+.|..
T Consensus 52 ~g~~~g~afV~f~~~~~A~~ 71 (105)
T 2dnh_A 52 DGSSKGCAFVKFSSHTEAQA 71 (105)
T ss_dssp SSCEEEEEEEEESSHHHHHH
T ss_pred CCCcCcEEEEEeCCHHHHHH
Confidence 4788899988 788777654
No 23
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=58.24 E-value=6.5 Score=23.36 Aligned_cols=19 Identities=16% Similarity=0.197 Sum_probs=14.2
Q ss_pred CCeeeeEEEe-ecCHHHHhh
Q 037293 14 AGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 14 ggkstGfa~I-YDs~d~akk 32 (82)
.|++.|||.| |++.+.|..
T Consensus 50 tg~~kG~afV~f~~~~~A~~ 69 (100)
T 3ns6_A 50 TGKTKGFLFVECGSMNDAKK 69 (100)
T ss_dssp TTEECSEEEEEESSHHHHHH
T ss_pred CCccceEEEEEECCHHHHHH
Confidence 4789999987 777766653
No 24
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=58.21 E-value=13 Score=22.71 Aligned_cols=19 Identities=16% Similarity=0.088 Sum_probs=14.9
Q ss_pred CCeeeeEEEe-ecCHHHHhh
Q 037293 14 AGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 14 ggkstGfa~I-YDs~d~akk 32 (82)
.|++.|||.| |++.++|..
T Consensus 44 tg~~rG~aFV~f~~~~~A~~ 63 (110)
T 3s8s_A 44 TRKHLGLARVLFTSTRGAKE 63 (110)
T ss_dssp TCCEEEEEEEEESSHHHHHH
T ss_pred CCceeeEEEEEECCHHHHHH
Confidence 4789999987 788777654
No 25
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=58.07 E-value=8 Score=22.36 Aligned_cols=20 Identities=30% Similarity=0.302 Sum_probs=14.7
Q ss_pred CCCeeeeEEEe-ecCHHHHhh
Q 037293 13 NAGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 13 GggkstGfa~I-YDs~d~akk 32 (82)
..|++.|||.| |+|.+.|.+
T Consensus 52 ~~g~~~g~afV~f~~~~~a~~ 72 (98)
T 2cqp_A 52 EKGMPTGEAMVAFESRDEATA 72 (98)
T ss_dssp SSSCEEEEEEEEESCHHHHHH
T ss_pred CCCCeeeEEEEEECCHHHHHH
Confidence 35678899987 788776653
No 26
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=58.05 E-value=16 Score=20.23 Aligned_cols=20 Identities=25% Similarity=0.395 Sum_probs=14.6
Q ss_pred CCCeeeeEEEe-ecCHHHHhh
Q 037293 13 NAGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 13 GggkstGfa~I-YDs~d~akk 32 (82)
..|.+.|||.| |+|.++|..
T Consensus 38 ~~~~~~g~afV~f~~~~~a~~ 58 (83)
T 3md1_A 38 QTGSSRGYGFVSFTSQDDAQN 58 (83)
T ss_dssp TTCCEEEEEEEEESCHHHHHH
T ss_pred CCCCccceEEEEECCHHHHHH
Confidence 45788899987 777777653
No 27
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=58.01 E-value=11 Score=21.91 Aligned_cols=19 Identities=16% Similarity=0.338 Sum_probs=14.8
Q ss_pred CCeeeeEEEe-ecCHHHHhh
Q 037293 14 AGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 14 ggkstGfa~I-YDs~d~akk 32 (82)
.|.+.|||.| |+|.++|..
T Consensus 46 ~g~~~g~afV~f~~~~~a~~ 65 (104)
T 1p1t_A 46 TGKPKGYGFCEYQDQETALS 65 (104)
T ss_dssp TTEEEEEEEEECSCHHHHHH
T ss_pred CCccceEEEEEECCHHHHHH
Confidence 5788999988 778777653
No 28
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=57.53 E-value=11 Score=22.29 Aligned_cols=20 Identities=15% Similarity=0.097 Sum_probs=15.1
Q ss_pred CCCeeeeEEEe-ecCHHHHhh
Q 037293 13 NAGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 13 GggkstGfa~I-YDs~d~akk 32 (82)
..|.+.|||.| |+|.+.|..
T Consensus 63 ~~~~~~g~afV~f~~~~~A~~ 83 (110)
T 1oo0_B 63 RTGFSKGYALVEYETHKQALA 83 (110)
T ss_dssp TTSSBCSEEEEEESSHHHHHH
T ss_pred CCCCcceEEEEEECCHHHHHH
Confidence 45788899987 788777654
No 29
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=57.39 E-value=14 Score=20.78 Aligned_cols=19 Identities=26% Similarity=0.504 Sum_probs=14.1
Q ss_pred CCeeeeEEEe-ecCHHHHhh
Q 037293 14 AGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 14 ggkstGfa~I-YDs~d~akk 32 (82)
.|++.|||.| |+|.+.|..
T Consensus 49 ~g~~~g~afV~f~~~~~a~~ 68 (87)
T 3s7r_A 49 TGRSRGFGFILFKDAASVEK 68 (87)
T ss_dssp TCCEEEEEEEEESSTHHHHH
T ss_pred CCccccEEEEEECCHHHHHH
Confidence 4788999987 777776643
No 30
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.27 E-value=5 Score=24.38 Aligned_cols=18 Identities=11% Similarity=-0.034 Sum_probs=14.5
Q ss_pred CeeeeEEEe-ecCHHHHhh
Q 037293 15 GRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 15 gkstGfa~I-YDs~d~akk 32 (82)
|++.|||.| |++.++|.+
T Consensus 49 g~~~G~aFV~f~~~~~a~~ 67 (114)
T 2dnl_A 49 FPPKGYAFLLFQEESSVQA 67 (114)
T ss_dssp SCTTSEEEECCSSHHHHHH
T ss_pred CCcccEEEEEECCHHHHHH
Confidence 788999988 888887643
No 31
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=57.22 E-value=15 Score=20.89 Aligned_cols=20 Identities=25% Similarity=0.376 Sum_probs=15.0
Q ss_pred CCCeeeeEEEe-ecCHHHHhh
Q 037293 13 NAGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 13 GggkstGfa~I-YDs~d~akk 32 (82)
..|.+.|||.| |+|.+.|..
T Consensus 52 ~~~~~~g~afV~f~~~~~A~~ 72 (95)
T 2cqc_A 52 QSRRSRGFAFVYFENVDDAKE 72 (95)
T ss_dssp SSSSEEEEEEEEESSHHHHHH
T ss_pred CCCCcccEEEEEECCHHHHHH
Confidence 34788899988 788777654
No 32
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=57.05 E-value=10 Score=23.09 Aligned_cols=18 Identities=28% Similarity=0.373 Sum_probs=14.3
Q ss_pred CeeeeEEEe-ecCHHHHhh
Q 037293 15 GRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 15 gkstGfa~I-YDs~d~akk 32 (82)
|.+.|||.| |+|.++|..
T Consensus 49 g~~rG~aFV~F~~~e~a~~ 67 (103)
T 1s79_A 49 KAFKGSIFVVFDSIESAKK 67 (103)
T ss_dssp TSCCCEEEEEESSHHHHHH
T ss_pred CCCccEEEEEECCHHHHHH
Confidence 788899977 888877754
No 33
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=56.61 E-value=8.7 Score=22.01 Aligned_cols=20 Identities=30% Similarity=0.302 Sum_probs=14.6
Q ss_pred CCCeeeeEEEe-ecCHHHHhh
Q 037293 13 NAGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 13 GggkstGfa~I-YDs~d~akk 32 (82)
..|.+.|||.| |++.+.|.+
T Consensus 52 ~~g~~~g~afV~f~~~~~a~~ 72 (95)
T 2ek1_A 52 EKGMPTGEAMVAFESRDEATA 72 (95)
T ss_dssp TTSCEEEEEEEEESSHHHHHH
T ss_pred CCCCEeeEEEEEECCHHHHHH
Confidence 34678899988 777776653
No 34
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=56.57 E-value=7.8 Score=22.22 Aligned_cols=18 Identities=39% Similarity=0.497 Sum_probs=13.6
Q ss_pred CeeeeEEEe-ecCHHHHhh
Q 037293 15 GRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 15 gkstGfa~I-YDs~d~akk 32 (82)
|.+.|||.| |+|.++|.+
T Consensus 54 g~~~g~afV~f~~~~~a~~ 72 (95)
T 2ywk_A 54 GKPKSFGFVCFKHPESVSY 72 (95)
T ss_dssp SCEEEEEEEEESSTHHHHH
T ss_pred CCCceEEEEEECCHHHHHH
Confidence 778899988 777776654
No 35
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=56.47 E-value=6.3 Score=21.61 Aligned_cols=20 Identities=10% Similarity=0.187 Sum_probs=14.4
Q ss_pred CCCeeeeEEEe-ecCHHHHhh
Q 037293 13 NAGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 13 GggkstGfa~I-YDs~d~akk 32 (82)
..|.+.|||.| |+|.++|..
T Consensus 36 ~~~~~~g~afV~f~~~~~a~~ 56 (75)
T 1iqt_A 36 KTNKRRGFCFITFKEEEPVKK 56 (75)
T ss_dssp CCSSSCCCEEEECSSSHHHHH
T ss_pred CCCCcCCEEEEEECCHHHHHH
Confidence 45788899987 777776654
No 36
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=56.46 E-value=8.2 Score=22.51 Aligned_cols=20 Identities=20% Similarity=0.287 Sum_probs=14.6
Q ss_pred CCCeeeeEEEe-ecCHHHHhh
Q 037293 13 NAGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 13 GggkstGfa~I-YDs~d~akk 32 (82)
..|++.|||.| |+|.+.|..
T Consensus 58 ~~g~~~G~afV~f~~~~~a~~ 78 (99)
T 2la6_A 58 ETGKLKGEATVSFDDPPSAKA 78 (99)
T ss_dssp TTCSEEEEEEEEBSSHHHHHH
T ss_pred CCCCeeeEEEEEECCHHHHHH
Confidence 45788999987 777776643
No 37
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.35 E-value=12 Score=21.85 Aligned_cols=20 Identities=15% Similarity=0.240 Sum_probs=14.7
Q ss_pred CCCeeeeEEEe-ecCHHHHhh
Q 037293 13 NAGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 13 GggkstGfa~I-YDs~d~akk 32 (82)
..|.+.|||+| |+|.++|..
T Consensus 53 ~~g~~~g~afV~f~~~~~a~~ 73 (105)
T 2dh8_A 53 TTNQSRGFGFVKFKDPNCVGT 73 (105)
T ss_dssp SSCCEEEEEEEEESSTTHHHH
T ss_pred CCCCcceEEEEEECCHHHHHH
Confidence 35788899987 777776654
No 38
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.21 E-value=15 Score=21.24 Aligned_cols=19 Identities=26% Similarity=0.405 Sum_probs=14.8
Q ss_pred CCeeeeEEEe-ecCHHHHhh
Q 037293 14 AGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 14 ggkstGfa~I-YDs~d~akk 32 (82)
.|++.|||.| |++.++|..
T Consensus 54 ~g~~~g~afV~f~~~~~a~~ 73 (100)
T 2do4_A 54 AGKPKGLAYVEYENESQASQ 73 (100)
T ss_dssp TSCEEEEEEEEESSHHHHHH
T ss_pred CCCEEeEEEEEECCHHHHHH
Confidence 5788899987 888777654
No 39
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=55.48 E-value=16 Score=21.38 Aligned_cols=19 Identities=26% Similarity=0.240 Sum_probs=15.0
Q ss_pred CCeeeeEEEe-ecCHHHHhh
Q 037293 14 AGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 14 ggkstGfa~I-YDs~d~akk 32 (82)
.|.+.|||.| |+|.+.|..
T Consensus 66 ~g~~~g~afV~f~~~~~a~~ 85 (107)
T 3ulh_A 66 SGRSLGTADVHFERKADALK 85 (107)
T ss_dssp TSCEEEEEEEEESSHHHHHH
T ss_pred CCCcceEEEEEECCHHHHHH
Confidence 6788999988 888877754
No 40
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=55.47 E-value=16 Score=21.30 Aligned_cols=19 Identities=21% Similarity=0.391 Sum_probs=14.5
Q ss_pred CCeeeeEEEe-ecCHHHHhh
Q 037293 14 AGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 14 ggkstGfa~I-YDs~d~akk 32 (82)
.|.+.|||.| |+|.++|..
T Consensus 53 ~~~~~g~afV~f~~~~~A~~ 72 (103)
T 2cq0_A 53 TGQSKGFAFISFHRREDAAR 72 (103)
T ss_dssp SCSEEEEEEEEESSHHHHHH
T ss_pred CCceeeEEEEEECCHHHHHH
Confidence 5778899987 778777654
No 41
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.41 E-value=7.9 Score=22.56 Aligned_cols=20 Identities=30% Similarity=0.409 Sum_probs=14.8
Q ss_pred CCCeeeeEEEe-ecCHHHHhh
Q 037293 13 NAGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 13 GggkstGfa~I-YDs~d~akk 32 (82)
..|.+.|||.| |+|.++|.+
T Consensus 49 ~~~~~~g~afV~f~~~~~A~~ 69 (102)
T 2fc8_A 49 ETGSSKGFGFVDFNSEEDAKA 69 (102)
T ss_dssp SSCSEEEEEEEECSSHHHHHH
T ss_pred CCCCcCcEEEEEECCHHHHHH
Confidence 35678899988 777777654
No 42
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=55.27 E-value=9.4 Score=21.71 Aligned_cols=19 Identities=42% Similarity=0.508 Sum_probs=14.5
Q ss_pred CCeeeeEEEe-ecCHHHHhh
Q 037293 14 AGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 14 ggkstGfa~I-YDs~d~akk 32 (82)
.|.+.|||.| |+|.+.|..
T Consensus 44 ~g~~~g~afV~f~~~~~a~~ 63 (92)
T 2dgv_A 44 NGKSKGCGVVKFESPEVAER 63 (92)
T ss_dssp SSCEEEEEEEEESSHHHHHH
T ss_pred CCCcceEEEEEECCHHHHHH
Confidence 5778899987 777777654
No 43
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.78 E-value=13 Score=21.22 Aligned_cols=19 Identities=32% Similarity=0.552 Sum_probs=14.6
Q ss_pred CCeeeeEEEe-ecCHHHHhh
Q 037293 14 AGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 14 ggkstGfa~I-YDs~d~akk 32 (82)
.|++.|||.| |+|.++|..
T Consensus 43 ~~~~~g~afV~f~~~~~a~~ 62 (95)
T 2dnz_A 43 TGRSKGYGFITFSDSECARR 62 (95)
T ss_dssp SCCCCSEEEEEESCHHHHHH
T ss_pred CCceeeEEEEEECCHHHHHH
Confidence 5778899987 888877754
No 44
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=54.51 E-value=8.7 Score=23.61 Aligned_cols=18 Identities=28% Similarity=0.351 Sum_probs=13.8
Q ss_pred CeeeeEEEe-ecCHHHHhh
Q 037293 15 GRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 15 gkstGfa~I-YDs~d~akk 32 (82)
|++.|||.| |++.+.|.+
T Consensus 58 g~~~G~afV~F~~~~~a~~ 76 (118)
T 2db1_A 58 GRQSGEAFVELESEDDVKL 76 (118)
T ss_dssp SCEEEEEEEEBSSHHHHHH
T ss_pred CCCCeEEEEEECCHHHHHH
Confidence 789999988 777766653
No 45
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=54.33 E-value=8.4 Score=23.54 Aligned_cols=18 Identities=17% Similarity=0.244 Sum_probs=14.4
Q ss_pred CeeeeEEEe-ecCHHHHhh
Q 037293 15 GRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 15 gkstGfa~I-YDs~d~akk 32 (82)
|++.|||.| |++.++|.+
T Consensus 65 ~~~~G~~fV~f~~~~~A~~ 83 (104)
T 1jmt_A 65 DHLVGNVYVKFRREEDAEK 83 (104)
T ss_dssp SSSEEEEEEEESCHHHHHH
T ss_pred CCccEEEEEEECCHHHHHH
Confidence 578999988 888887753
No 46
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.14 E-value=15 Score=21.36 Aligned_cols=19 Identities=37% Similarity=0.566 Sum_probs=14.6
Q ss_pred CCeeeeEEEe-ecCHHHHhh
Q 037293 14 AGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 14 ggkstGfa~I-YDs~d~akk 32 (82)
.|.+.|||.| |+|.++|..
T Consensus 51 ~g~~~g~afV~f~~~~~A~~ 70 (103)
T 2d9p_A 51 GGRSKGFGFVCFSSPEEATK 70 (103)
T ss_dssp SSSEEEEEEEEESSHHHHHH
T ss_pred CCCcCEEEEEEECCHHHHHH
Confidence 6788999987 788777654
No 47
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=53.48 E-value=7.6 Score=23.41 Aligned_cols=18 Identities=39% Similarity=0.364 Sum_probs=13.2
Q ss_pred CCeeeeEEEe-ecCHHHHh
Q 037293 14 AGRVTFAGWV-FESVESKS 31 (82)
Q Consensus 14 ggkstGfa~I-YDs~d~ak 31 (82)
.|++.|||.| |+|.+.|.
T Consensus 51 ~g~~~G~afV~F~~~~~a~ 69 (102)
T 1wez_A 51 DGRVTGEADVEFATHEDAV 69 (102)
T ss_dssp SSCEEEEEEEECSSSHHHH
T ss_pred CCCEeeEEEEEECCHHHHH
Confidence 5789999988 66666554
No 48
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.31 E-value=13 Score=21.48 Aligned_cols=19 Identities=26% Similarity=0.361 Sum_probs=14.0
Q ss_pred CCeeeeEEEe-ecCHHHHhh
Q 037293 14 AGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 14 ggkstGfa~I-YDs~d~akk 32 (82)
.|.+.|||.| |+|.++|..
T Consensus 48 ~~~~~g~afV~f~~~~~a~~ 67 (99)
T 2dgs_A 48 KQRPRGFGFITFEDEQSVDQ 67 (99)
T ss_dssp TCSCCSEEEEEESSHHHHHH
T ss_pred CCCCCceEEEEECCHHHHHH
Confidence 4678899977 777777654
No 49
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.23 E-value=18 Score=20.97 Aligned_cols=19 Identities=26% Similarity=0.347 Sum_probs=14.3
Q ss_pred CCeeeeEEEe-ecCHHHHhh
Q 037293 14 AGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 14 ggkstGfa~I-YDs~d~akk 32 (82)
.|.+.|||.| |+|.+.|..
T Consensus 47 ~g~~~g~afV~f~~~~~a~~ 66 (104)
T 2dhg_A 47 TGVSKGYGFVKFTDELEQKR 66 (104)
T ss_dssp TCCEEEEEEEEESCHHHHHH
T ss_pred CCCccceEEEEECCHHHHHH
Confidence 5778999987 778776644
No 50
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.14 E-value=9.4 Score=24.31 Aligned_cols=18 Identities=33% Similarity=0.379 Sum_probs=13.2
Q ss_pred CCeeeeEEEe-ecCHHHHh
Q 037293 14 AGRVTFAGWV-FESVESKS 31 (82)
Q Consensus 14 ggkstGfa~I-YDs~d~ak 31 (82)
.|++.|||.| |+|.+.|.
T Consensus 64 ~gr~~G~aFV~F~~~~~A~ 82 (123)
T 2dha_A 64 DGRPTGDAFVLFACEEYAQ 82 (123)
T ss_dssp TSCEEEEEEECCSSHHHHH
T ss_pred CCCEeeEEEEEECCHHHHH
Confidence 5789999998 55665554
No 51
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.05 E-value=10 Score=21.89 Aligned_cols=20 Identities=15% Similarity=0.194 Sum_probs=14.6
Q ss_pred CCCeeeeEEEe-ecCHHHHhh
Q 037293 13 NAGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 13 GggkstGfa~I-YDs~d~akk 32 (82)
..|.+.|||.| |+|.++|..
T Consensus 47 ~~g~~~g~afV~f~~~~~a~~ 67 (99)
T 2div_A 47 LTGIPAGYCFVEFADLATAEK 67 (99)
T ss_dssp SSCCEEEEEEEECSCHHHHHH
T ss_pred CCCCcCCEEEEEeCCHHHHHH
Confidence 35678899988 777776654
No 52
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=51.80 E-value=6.9 Score=23.12 Aligned_cols=19 Identities=26% Similarity=0.401 Sum_probs=14.7
Q ss_pred CCeeeeEEEe-ecCHHHHhh
Q 037293 14 AGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 14 ggkstGfa~I-YDs~d~akk 32 (82)
.|++.|||.| |+|.+.|..
T Consensus 57 ~g~~~g~afV~f~~~~~a~~ 76 (100)
T 2j76_E 57 PERLKGFGYAEFEDLDSLLS 76 (100)
T ss_dssp TCCCCSCEEEEECCHHHHHH
T ss_pred CCccCeEEEEEECCHHHHHH
Confidence 5788899987 777777655
No 53
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=51.46 E-value=20 Score=21.71 Aligned_cols=20 Identities=25% Similarity=0.395 Sum_probs=15.2
Q ss_pred CCCeeeeEEEe-ecCHHHHhh
Q 037293 13 NAGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 13 GggkstGfa~I-YDs~d~akk 32 (82)
..|.+.|||.| |+|.++|.+
T Consensus 124 ~~~~~~g~afV~f~~~~~A~~ 144 (166)
T 3md3_A 124 QTGSSRGYGFVSFTSQDDAQN 144 (166)
T ss_dssp TTCCEEEEEEEEESCHHHHHH
T ss_pred CCCCcceEEEEEeCCHHHHHH
Confidence 45788999988 778777754
No 54
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=51.22 E-value=16 Score=21.06 Aligned_cols=19 Identities=16% Similarity=0.100 Sum_probs=14.5
Q ss_pred CCeeeeEEEe-ecCHHHHhh
Q 037293 14 AGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 14 ggkstGfa~I-YDs~d~akk 32 (82)
.|.+.|||.| |+|.++|..
T Consensus 46 ~~~~~g~afV~f~~~~~a~~ 65 (99)
T 1whw_A 46 TKKPKGFAFVTFMFPEHAVK 65 (99)
T ss_dssp TCCCCSEEEEEESSHHHHHH
T ss_pred CCCcCeEEEEEECCHHHHHH
Confidence 5778899987 788777654
No 55
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=51.16 E-value=8 Score=23.03 Aligned_cols=20 Identities=15% Similarity=0.194 Sum_probs=15.0
Q ss_pred CCCeeeeEEEe-ecCHHHHhh
Q 037293 13 NAGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 13 GggkstGfa~I-YDs~d~akk 32 (82)
-.|++.|||.| |+|.++|..
T Consensus 60 ~~g~~~g~afV~f~~~~~A~~ 80 (113)
T 2cpe_A 60 ETGKPKGDATVSYEDPPTAKA 80 (113)
T ss_dssp TTCSBCSEEEEEBSSHHHHHH
T ss_pred CCCCeeeEEEEEECCHHHHHH
Confidence 45788899988 788777654
No 56
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=50.88 E-value=9.1 Score=20.96 Aligned_cols=18 Identities=22% Similarity=0.230 Sum_probs=13.5
Q ss_pred CCeeeeEEEe-ecCHHHHh
Q 037293 14 AGRVTFAGWV-FESVESKS 31 (82)
Q Consensus 14 ggkstGfa~I-YDs~d~ak 31 (82)
.|++.|||.| |+|.++|.
T Consensus 38 ~~~~~g~afV~f~~~~~a~ 56 (77)
T 1uaw_A 38 TKRSRGFGFVTFMDQAGVD 56 (77)
T ss_dssp SSSCSSEEEECCCCTTHHH
T ss_pred CCCcCceEEEEEcCHHHHH
Confidence 5788899988 67776664
No 57
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=50.65 E-value=21 Score=23.26 Aligned_cols=19 Identities=21% Similarity=0.062 Sum_probs=15.0
Q ss_pred CCeeeeEEEe-ecCHHHHhh
Q 037293 14 AGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 14 ggkstGfa~I-YDs~d~akk 32 (82)
.|++.|||.| |+|.++|..
T Consensus 95 tg~skGfaFV~f~~~~~A~~ 114 (156)
T 3n9u_C 95 NGQSKGYAEVVVASENSVHK 114 (156)
T ss_dssp TCCEEEEEEEEESCHHHHHH
T ss_pred CCccceEEEEEECCHHHHHH
Confidence 6889999998 888876643
No 58
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=50.48 E-value=22 Score=21.09 Aligned_cols=20 Identities=20% Similarity=0.227 Sum_probs=14.7
Q ss_pred CCCeeeeEEEe-ecCHHHHhh
Q 037293 13 NAGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 13 GggkstGfa~I-YDs~d~akk 32 (82)
..|.+.|||.| |++.++|..
T Consensus 52 ~~~~~~g~afV~f~~~~~a~~ 72 (115)
T 2dgo_A 52 ATGKSKGYGFVSFFNKWDAEN 72 (115)
T ss_dssp TTCCEEEEEEEEESSHHHHHH
T ss_pred CCCCcceEEEEEECCHHHHHH
Confidence 36788899987 777776654
No 59
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=50.39 E-value=22 Score=21.35 Aligned_cols=20 Identities=25% Similarity=0.511 Sum_probs=15.4
Q ss_pred CCCeeeeEEEe-ecCHHHHhh
Q 037293 13 NAGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 13 GggkstGfa~I-YDs~d~akk 32 (82)
..|.+.|||.| |+|.+.|..
T Consensus 63 ~~g~~~g~afV~F~~~~~A~~ 83 (108)
T 2jrs_A 63 ETGRSKGYGFITFSDSECAKK 83 (108)
T ss_dssp TTTEEEEEEEEEESCHHHHHH
T ss_pred CCCccceEEEEEECCHHHHHH
Confidence 46788999987 778777654
No 60
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=49.95 E-value=14 Score=21.59 Aligned_cols=19 Identities=32% Similarity=0.349 Sum_probs=14.3
Q ss_pred CCeeeeEEEe-ecCHHHHhh
Q 037293 14 AGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 14 ggkstGfa~I-YDs~d~akk 32 (82)
.|.+.|||.| |+|.+.|.+
T Consensus 53 ~~~~~g~afV~f~~~~~a~~ 72 (105)
T 1x5u_A 53 TGQHQGYGFVEFLSEEDADY 72 (105)
T ss_dssp SCSBCSCEEEEESSHHHHHH
T ss_pred CCcCCcEEEEEECCHHHHHH
Confidence 5778889977 777777654
No 61
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=49.55 E-value=21 Score=22.50 Aligned_cols=20 Identities=20% Similarity=0.393 Sum_probs=15.4
Q ss_pred CCCeeeeEEEe-ecCHHHHhh
Q 037293 13 NAGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 13 GggkstGfa~I-YDs~d~akk 32 (82)
..|.+.|||.| |+|.++|.+
T Consensus 141 ~~g~~~g~afV~F~~~~~A~~ 161 (196)
T 1l3k_A 141 GSGKKRGFAFVTFDDHDSVDK 161 (196)
T ss_dssp TTCCEEEEEEEEESSHHHHHH
T ss_pred CCCCccceEEEEECCHHHHHH
Confidence 36788999998 888777653
No 62
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=49.14 E-value=8.9 Score=21.99 Aligned_cols=20 Identities=15% Similarity=0.363 Sum_probs=14.8
Q ss_pred CCCeeeeEEEe-ecCHHHHhh
Q 037293 13 NAGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 13 GggkstGfa~I-YDs~d~akk 32 (82)
..|.+.|||.| |+|.++|..
T Consensus 43 ~~g~~~g~afV~f~~~~~A~~ 63 (96)
T 1x5t_A 43 DTGNSKGYAFINFASFDASDA 63 (96)
T ss_dssp TTCSCCSEEEEEBSSHHHHHH
T ss_pred CCCCcCeEEEEEECCHHHHHH
Confidence 45677889977 788877654
No 63
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=49.13 E-value=9.5 Score=23.35 Aligned_cols=18 Identities=28% Similarity=0.462 Sum_probs=12.6
Q ss_pred CCeeeeEEEe-ecCHHHHh
Q 037293 14 AGRVTFAGWV-FESVESKS 31 (82)
Q Consensus 14 ggkstGfa~I-YDs~d~ak 31 (82)
.|++.|||.| |++.+.|.
T Consensus 63 ~g~~~G~afV~F~~~~~a~ 81 (124)
T 1wel_A 63 NGKATGEGFVEFRNEADYK 81 (124)
T ss_dssp TSSEEEEEEEEBSSSHHHH
T ss_pred CCCCCeEEEEEECCHHHHH
Confidence 5788999988 56655443
No 64
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=49.04 E-value=7.8 Score=22.83 Aligned_cols=18 Identities=28% Similarity=0.418 Sum_probs=14.1
Q ss_pred CeeeeEEEe-ecCHHHHhh
Q 037293 15 GRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 15 gkstGfa~I-YDs~d~akk 32 (82)
|++.|||.| |+|.+.|.+
T Consensus 54 g~~~g~afV~f~~~~~a~~ 72 (104)
T 1wi8_A 54 ERLKGFGYAEFEDLDSLLS 72 (104)
T ss_dssp TSBCSCEEEEESSHHHHHH
T ss_pred CCcCeEEEEEECCHHHHHH
Confidence 788899987 778777654
No 65
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=49.00 E-value=8.3 Score=23.63 Aligned_cols=19 Identities=11% Similarity=0.219 Sum_probs=14.7
Q ss_pred CCeeeeEEEe-ecCHHHHhh
Q 037293 14 AGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 14 ggkstGfa~I-YDs~d~akk 32 (82)
.|.+.|||.| |+|.++|..
T Consensus 44 ~g~~~g~afV~F~~~~~A~~ 63 (116)
T 2fy1_A 44 TSKSRGFAFITFENPADAKN 63 (116)
T ss_dssp TTTCCCEEEEECSSHHHHHH
T ss_pred CCCcccEEEEEECCHHHHHH
Confidence 5778899987 778777654
No 66
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=48.88 E-value=19 Score=20.17 Aligned_cols=20 Identities=20% Similarity=0.225 Sum_probs=14.1
Q ss_pred CCCeeeeEEEe-ecCHHHHhh
Q 037293 13 NAGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 13 GggkstGfa~I-YDs~d~akk 32 (82)
..|.+.|||.| |+|.++|.+
T Consensus 43 ~~~~~~g~afV~f~~~~~a~~ 63 (89)
T 3ucg_A 43 FSGHPKGFAYIEFSDKESVRT 63 (89)
T ss_dssp SSSSCCEEEEEEESSTHHHHH
T ss_pred CCCCcceEEEEEECCHHHHHH
Confidence 35778889887 677766654
No 67
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=48.75 E-value=17 Score=21.68 Aligned_cols=19 Identities=21% Similarity=0.363 Sum_probs=14.7
Q ss_pred CCeeeeEEEe-ecCHHHHhh
Q 037293 14 AGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 14 ggkstGfa~I-YDs~d~akk 32 (82)
.+++.|||.| |+|.+.|..
T Consensus 55 ~~~~~g~afV~f~~~~~a~~ 74 (116)
T 2cqd_A 55 TGKSRGYGFVTMADRAAAER 74 (116)
T ss_dssp SCCCCSEEEEEESSHHHHHH
T ss_pred CCccceEEEEEECCHHHHHH
Confidence 4778899988 888887754
No 68
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=48.60 E-value=7.5 Score=23.30 Aligned_cols=18 Identities=17% Similarity=0.250 Sum_probs=13.0
Q ss_pred CeeeeEEEe-ecCHHHHhh
Q 037293 15 GRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 15 gkstGfa~I-YDs~d~akk 32 (82)
|++.|||.| |+|.++|.+
T Consensus 52 g~~~G~afV~F~~~~~a~~ 70 (107)
T 2lmi_A 52 GKRRGDALIEMESEQDVQK 70 (107)
T ss_dssp STTCSEEEEEBSSHHHHHH
T ss_pred CCEeeEEEEEECCHHHHHH
Confidence 788899987 666665543
No 69
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=48.58 E-value=11 Score=24.31 Aligned_cols=17 Identities=24% Similarity=0.329 Sum_probs=13.2
Q ss_pred CeeeeEEEe-ecCHHHHh
Q 037293 15 GRVTFAGWV-FESVESKS 31 (82)
Q Consensus 15 gkstGfa~I-YDs~d~ak 31 (82)
|++.|||.| |+|.++|.
T Consensus 85 g~srG~aFV~F~~~e~a~ 102 (136)
T 2hgl_A 85 GRQSGEAFVELGSEDDVK 102 (136)
T ss_dssp SCEEEEEEEECSSHHHHH
T ss_pred CCCCeEEEEEECCHHHHH
Confidence 789999987 66766654
No 70
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=48.55 E-value=5.9 Score=23.17 Aligned_cols=18 Identities=39% Similarity=0.562 Sum_probs=12.7
Q ss_pred CeeeeEEEe-ecCHHHHhh
Q 037293 15 GRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 15 gkstGfa~I-YDs~d~akk 32 (82)
|.+.|||.| |+|.+.|.+
T Consensus 55 g~~~g~afV~f~~~~~a~~ 73 (101)
T 1fj7_A 55 GTNRKFGYVDFESAEDLEK 73 (101)
T ss_dssp ETTTTEEEEEESSHHHHHH
T ss_pred CCcCcEEEEEECCHHHHHH
Confidence 567789987 777766543
No 71
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.51 E-value=9.1 Score=22.32 Aligned_cols=19 Identities=21% Similarity=0.377 Sum_probs=14.3
Q ss_pred CCeeeeEEEe-ecCHHHHhh
Q 037293 14 AGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 14 ggkstGfa~I-YDs~d~akk 32 (82)
.|++.|||.| |+|.+.|.+
T Consensus 49 ~g~~~g~afV~f~~~~~A~~ 68 (101)
T 2fc9_A 49 NGKSKGYAFIEFASFEDAKE 68 (101)
T ss_dssp SSCBCSEEEEECSSHHHHHH
T ss_pred CCCEeeEEEEEECCHHHHHH
Confidence 4678899987 788777654
No 72
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=48.31 E-value=8.2 Score=23.00 Aligned_cols=19 Identities=21% Similarity=0.359 Sum_probs=14.4
Q ss_pred CCeeeeEEEe-ecCHHHHhh
Q 037293 14 AGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 14 ggkstGfa~I-YDs~d~akk 32 (82)
.|++.|||.| |+|.++|..
T Consensus 63 ~g~~~g~afV~f~~~~~a~~ 82 (115)
T 2cpx_A 63 TGRMRGQAFITFPNKEIAWQ 82 (115)
T ss_dssp CSSSCSEEEEECSSHHHHHH
T ss_pred CCccceEEEEEECCHHHHHH
Confidence 6778899987 778777654
No 73
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=48.31 E-value=9.9 Score=22.61 Aligned_cols=19 Identities=37% Similarity=0.473 Sum_probs=13.8
Q ss_pred CCeeeeEEEe-ecCHHHHhh
Q 037293 14 AGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 14 ggkstGfa~I-YDs~d~akk 32 (82)
.|++.|||.| |+|.+.|.+
T Consensus 53 ~g~~~G~afV~F~~~~~a~~ 72 (104)
T 1wg5_A 53 QGRSTGEAFVQFASQEIAEK 72 (104)
T ss_dssp SSCBCSEEEEEESSHHHHHH
T ss_pred CCCcceEEEEEECCHHHHHH
Confidence 5788999987 667665543
No 74
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=48.02 E-value=9.8 Score=22.42 Aligned_cols=21 Identities=14% Similarity=0.131 Sum_probs=14.7
Q ss_pred CCCCeeeeEEEe-ecCHHHHhh
Q 037293 12 VNAGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 12 FGggkstGfa~I-YDs~d~akk 32 (82)
-+.|.+.|||.| |+|.+.|..
T Consensus 46 ~~~g~~~g~afV~f~~~~~A~~ 67 (109)
T 2dis_A 46 ADKMKNRGFAFVEYESHRAAAM 67 (109)
T ss_dssp CTTTTTCCEEEEEESSHHHHHH
T ss_pred CCCCCcCcEEEEEecCHHHHHH
Confidence 345688899987 777766543
No 75
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=47.95 E-value=14 Score=22.67 Aligned_cols=19 Identities=21% Similarity=0.359 Sum_probs=14.7
Q ss_pred CCeeeeEEEe-ecCHHHHhh
Q 037293 14 AGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 14 ggkstGfa~I-YDs~d~akk 32 (82)
.|.+.|||.| |+|.++|.+
T Consensus 127 ~~~~~g~afV~f~~~~~A~~ 146 (168)
T 1b7f_A 127 TGRPRGVAFVRYNKREEAQE 146 (168)
T ss_dssp TCCEEEEEEEEESSHHHHHH
T ss_pred CCCcceEEEEEECCHHHHHH
Confidence 5778899988 788877754
No 76
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=47.74 E-value=14 Score=21.45 Aligned_cols=20 Identities=25% Similarity=0.456 Sum_probs=14.5
Q ss_pred CCCeeeeEEEe-ecCHHHHhh
Q 037293 13 NAGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 13 GggkstGfa~I-YDs~d~akk 32 (82)
-.+.+.|||.| |+|.++|..
T Consensus 49 ~~~~~~g~afV~f~~~~~A~~ 69 (102)
T 1x5s_A 49 ETQRSRGFGFVTFENIDDAKD 69 (102)
T ss_dssp SSCSCCSEEEEECSSHHHHHH
T ss_pred CCCCcccEEEEEECCHHHHHH
Confidence 35678889987 778777653
No 77
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=47.52 E-value=7.4 Score=23.54 Aligned_cols=18 Identities=17% Similarity=0.067 Sum_probs=12.8
Q ss_pred CCeeeeEEEe-ecCHHHHh
Q 037293 14 AGRVTFAGWV-FESVESKS 31 (82)
Q Consensus 14 ggkstGfa~I-YDs~d~ak 31 (82)
.|++.|||.| |+|.++|.
T Consensus 49 tg~srG~aFV~f~~~~~A~ 67 (95)
T 2lkz_A 49 TQQNRGFAFVQLSSAMDAS 67 (95)
T ss_dssp SSSCSSEEEEECSSSHHHH
T ss_pred CCCCceEeEEEECCHHHHH
Confidence 4788899988 66666554
No 78
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=47.47 E-value=18 Score=21.51 Aligned_cols=19 Identities=16% Similarity=0.261 Sum_probs=14.6
Q ss_pred CCeeeeEEEe-ecCHHHHhh
Q 037293 14 AGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 14 ggkstGfa~I-YDs~d~akk 32 (82)
.|.+.|||+| |++.+.|.+
T Consensus 63 ~g~~~g~afV~f~~~~~a~~ 82 (115)
T 2cpz_A 63 TNLSKCFGFVSYDNPVSAQA 82 (115)
T ss_dssp SCSEEEEEEEECSSHHHHHH
T ss_pred CCCcCccEEEEECCHHHHHH
Confidence 5788899988 778777654
No 79
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=47.45 E-value=13 Score=22.39 Aligned_cols=19 Identities=21% Similarity=0.265 Sum_probs=14.4
Q ss_pred CCeeeeEEEe-ecCHHHHhh
Q 037293 14 AGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 14 ggkstGfa~I-YDs~d~akk 32 (82)
.|.+.|||.| |+|.+.|.+
T Consensus 63 tg~~kg~afV~f~~~~~A~~ 82 (109)
T 2rs2_A 63 TKRSRGFGFVTFMDQAGVDK 82 (109)
T ss_dssp TCCCTTCEEEEESSHHHHHH
T ss_pred CCCcCcEEEEEECCHHHHHH
Confidence 4778899987 788877654
No 80
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=47.42 E-value=17 Score=20.56 Aligned_cols=21 Identities=10% Similarity=0.148 Sum_probs=14.5
Q ss_pred CCeeeeEEEe-ecCHHHHhhcc
Q 037293 14 AGRVTFAGWV-FESVESKSRFS 34 (82)
Q Consensus 14 ggkstGfa~I-YDs~d~akk~E 34 (82)
.|.+.|||.| |+|.++..-++
T Consensus 39 ~~~~~g~afV~f~~~~a~~a~~ 60 (90)
T 2ki2_A 39 TKKPKGFGFVEMQEESVSEAIA 60 (90)
T ss_dssp SCCCCEEEEEEECTTHHHHHHH
T ss_pred CCCcceEEEEEECCHHHHHHHH
Confidence 4788899987 77777444343
No 81
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.23 E-value=14 Score=21.03 Aligned_cols=19 Identities=11% Similarity=0.204 Sum_probs=13.8
Q ss_pred CCeeeeEEEe-ecCHHHHhh
Q 037293 14 AGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 14 ggkstGfa~I-YDs~d~akk 32 (82)
.|.+.|||.| |+|.++|.+
T Consensus 54 ~~~~~g~afV~f~~~~~A~~ 73 (94)
T 2e5h_A 54 TRKSKGVAFILFLDKDSAQN 73 (94)
T ss_dssp SCCCTTCEEEEESCHHHHHH
T ss_pred CCCcccEEEEEECCHHHHHH
Confidence 4677888877 788877654
No 82
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=47.08 E-value=14 Score=21.47 Aligned_cols=18 Identities=22% Similarity=0.185 Sum_probs=12.7
Q ss_pred CCeeeeEEEe-ecCHHHHh
Q 037293 14 AGRVTFAGWV-FESVESKS 31 (82)
Q Consensus 14 ggkstGfa~I-YDs~d~ak 31 (82)
.|.+.|||.| |+|.++|.
T Consensus 46 ~g~~~g~afV~f~~~~~a~ 64 (102)
T 2xs2_A 46 TGVSKGYGFVSFYNDVDVQ 64 (102)
T ss_dssp TSCEEEEEEEEESSCCCHH
T ss_pred CCCccceEEEEECCHHHHH
Confidence 5788899987 65655554
No 83
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=46.68 E-value=14 Score=22.05 Aligned_cols=20 Identities=25% Similarity=0.313 Sum_probs=14.2
Q ss_pred CCCeeeeEEEe-ecCHHHHhh
Q 037293 13 NAGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 13 GggkstGfa~I-YDs~d~akk 32 (82)
..|.+.|||+| |++.+.|..
T Consensus 64 ~~g~~~g~afV~f~~~~~a~~ 84 (116)
T 1x4b_A 64 ASKRSRGFGFVTFSSMAEVDA 84 (116)
T ss_dssp TTSSCCSEEEEECSSHHHHHH
T ss_pred CCCCcCceEEEEeCCHHHHHH
Confidence 34778899987 777776644
No 84
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=46.40 E-value=25 Score=20.44 Aligned_cols=20 Identities=20% Similarity=0.267 Sum_probs=14.9
Q ss_pred CCeeeeEEEe-ecCHHHHhhc
Q 037293 14 AGRVTFAGWV-FESVESKSRF 33 (82)
Q Consensus 14 ggkstGfa~I-YDs~d~akk~ 33 (82)
.|++.|||.| |+|.+.|...
T Consensus 52 ~g~~~g~afV~f~~~~~a~~A 72 (103)
T 2dng_A 52 TDKFKGFCYVEFDEVDSLKEA 72 (103)
T ss_dssp SCSEEEEEEEEESSHHHHHHH
T ss_pred CCccceEEEEEECCHHHHHHH
Confidence 4788899987 7787776653
No 85
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=46.24 E-value=7.8 Score=24.97 Aligned_cols=17 Identities=35% Similarity=0.515 Sum_probs=12.8
Q ss_pred CeeeeEEEe-ecCHHHHh
Q 037293 15 GRVTFAGWV-FESVESKS 31 (82)
Q Consensus 15 gkstGfa~I-YDs~d~ak 31 (82)
|++.|||.| |+|.+.|.
T Consensus 81 GrsrGfaFV~F~~~e~A~ 98 (126)
T 2hgm_A 81 GKITGEAFVQFASQELAE 98 (126)
T ss_dssp SSSCSEEEEEESSTTHHH
T ss_pred CCCceEEEEEECCHHHHH
Confidence 788999987 66666554
No 86
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=46.09 E-value=22 Score=20.79 Aligned_cols=19 Identities=11% Similarity=0.198 Sum_probs=13.8
Q ss_pred CCeeeeEEEe-ecCHHHHhh
Q 037293 14 AGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 14 ggkstGfa~I-YDs~d~akk 32 (82)
.|.+.|||.| |+|.++|..
T Consensus 53 ~g~~~g~afV~f~~~~~A~~ 72 (111)
T 1x4h_A 53 TEHSKGCAFAQFMTQEAAQK 72 (111)
T ss_dssp SCCBCSEEEEEESSHHHHHH
T ss_pred CCCCccEEEEEECCHHHHHH
Confidence 4678899987 677776643
No 87
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=45.07 E-value=17 Score=21.65 Aligned_cols=19 Identities=21% Similarity=0.240 Sum_probs=14.0
Q ss_pred CCeeeeEEEe-ecCHHHHhh
Q 037293 14 AGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 14 ggkstGfa~I-YDs~d~akk 32 (82)
.|.+.|||.| |++.+.|.+
T Consensus 63 ~g~~~g~afV~f~~~~~a~~ 82 (114)
T 2cq4_A 63 SRRSKGIAYVEFCEIQSVPL 82 (114)
T ss_dssp SSSCCCCEEEEESCGGGHHH
T ss_pred CCccCcEEEEEeCcHHHHHH
Confidence 3778899987 777776654
No 88
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=45.01 E-value=29 Score=21.02 Aligned_cols=19 Identities=16% Similarity=0.316 Sum_probs=14.9
Q ss_pred CCeeeeEEEe-ecCHHHHhh
Q 037293 14 AGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 14 ggkstGfa~I-YDs~d~akk 32 (82)
.|.+.|||.| |.|.++|..
T Consensus 40 ~~~~~g~afV~f~~~~~A~~ 59 (167)
T 1fxl_A 40 TGQSLGYGFVNYIDPKDAEK 59 (167)
T ss_dssp TCCEEEEEEEEESSHHHHHH
T ss_pred CCcceeEEEEEECCHHHHHH
Confidence 5778899988 788877754
No 89
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=44.96 E-value=22 Score=21.57 Aligned_cols=20 Identities=20% Similarity=0.235 Sum_probs=14.9
Q ss_pred CCCeeeeEEEe-ecCHHHHhh
Q 037293 13 NAGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 13 GggkstGfa~I-YDs~d~akk 32 (82)
..|.+.|||.| |+|.+.|.+
T Consensus 100 ~~~~~~g~afV~f~~~~~a~~ 120 (140)
T 2ku7_A 100 ETEKHRGFAFVEFELAEDAAA 120 (140)
T ss_dssp TTCCCCSEEEEEESCHHHHHH
T ss_pred CCCCcCcEEEEEECCHHHHHH
Confidence 35778899987 778777654
No 90
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=44.91 E-value=21 Score=20.77 Aligned_cols=19 Identities=21% Similarity=0.338 Sum_probs=14.4
Q ss_pred CCeeeeEEEe-ecCHHHHhh
Q 037293 14 AGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 14 ggkstGfa~I-YDs~d~akk 32 (82)
.|.+.|||.| |+|.+.|..
T Consensus 54 ~~~~~g~afV~f~~~~~a~~ 73 (107)
T 2cph_A 54 TGAHRGFGFVDFITKQDAKK 73 (107)
T ss_dssp SCSSCSEEEEEESSHHHHHH
T ss_pred CCCcCceEEEEECCHHHHHH
Confidence 6778899987 788777654
No 91
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.79 E-value=13 Score=21.74 Aligned_cols=19 Identities=11% Similarity=0.058 Sum_probs=13.3
Q ss_pred CCeeeeEEEe-ecCHHHHhh
Q 037293 14 AGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 14 ggkstGfa~I-YDs~d~akk 32 (82)
.|.+.|||.| |+|.++|..
T Consensus 51 ~~~~~g~afV~f~~~~~A~~ 70 (103)
T 2dnm_A 51 TKAPRGFAFVRFHDRRDAQD 70 (103)
T ss_dssp SCSBCSCEEEEESSSSHHHH
T ss_pred CCCCCeEEEEEECCHHHHHH
Confidence 4678888887 777666543
No 92
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.76 E-value=16 Score=21.64 Aligned_cols=18 Identities=28% Similarity=0.298 Sum_probs=12.9
Q ss_pred CeeeeEEEe-ecCHHHHhh
Q 037293 15 GRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 15 gkstGfa~I-YDs~d~akk 32 (82)
|.+.|||.| |+|.+.|..
T Consensus 53 g~~~g~afV~f~~~~~a~~ 71 (114)
T 2do0_A 53 GKSRGIGTVTFEQSIEAVQ 71 (114)
T ss_dssp CSEEEEEEEEESSHHHHHH
T ss_pred CCeeeEEEEEECCHHHHHH
Confidence 678899977 777766543
No 93
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=44.63 E-value=30 Score=20.43 Aligned_cols=19 Identities=26% Similarity=0.342 Sum_probs=14.3
Q ss_pred CCeeeeEEEe-ecCHHHHhh
Q 037293 14 AGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 14 ggkstGfa~I-YDs~d~akk 32 (82)
.|.+.|||.| |+|.+.|..
T Consensus 62 ~g~~~g~afV~f~~~~~a~~ 81 (114)
T 1x5o_A 62 SGTSRGVGFARMESTEKCEA 81 (114)
T ss_dssp SSCEEEEEEEEESCHHHHHH
T ss_pred CCCcceEEEEEECCHHHHHH
Confidence 5778899988 777776654
No 94
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=44.57 E-value=8.6 Score=22.93 Aligned_cols=18 Identities=11% Similarity=0.122 Sum_probs=13.0
Q ss_pred CCeeeeEEEe-ecCHHHHh
Q 037293 14 AGRVTFAGWV-FESVESKS 31 (82)
Q Consensus 14 ggkstGfa~I-YDs~d~ak 31 (82)
.|++.|||.| |+|.+.|.
T Consensus 57 ~g~~~G~afV~f~~~~~A~ 75 (105)
T 2nlw_A 57 DGKTKGYIFLEYASPAHAV 75 (105)
T ss_dssp TTBSCCEEEEEECSSSHHH
T ss_pred CCCeeeEEEEEECCHHHHH
Confidence 4688899987 67766554
No 95
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=44.41 E-value=28 Score=21.85 Aligned_cols=19 Identities=11% Similarity=-0.022 Sum_probs=14.6
Q ss_pred CCeeeeEEEe-ecCHHHHhh
Q 037293 14 AGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 14 ggkstGfa~I-YDs~d~akk 32 (82)
.+.+.|||.| |+|.++|..
T Consensus 77 ~~~~~g~afV~f~~~~~A~~ 96 (156)
T 1h2v_Z 77 KKTACGFCFVEYYSRADAEN 96 (156)
T ss_dssp TCCEEEEEEEEESSHHHHHH
T ss_pred CCccceEEEEEECCHHHHHH
Confidence 5778899988 888777644
No 96
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=43.92 E-value=19 Score=21.71 Aligned_cols=19 Identities=16% Similarity=0.198 Sum_probs=14.2
Q ss_pred CCeeeeEEEe-ecCHHHHhh
Q 037293 14 AGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 14 ggkstGfa~I-YDs~d~akk 32 (82)
.|.+.|||.| |+|.+.|..
T Consensus 60 ~~~~~g~afV~f~~~~~a~~ 79 (126)
T 3ex7_B 60 TGYLKGYTLVEYETYKEAQA 79 (126)
T ss_dssp TSSBCSCEEEEESSHHHHHH
T ss_pred CCccceEEEEEECCHHHHHH
Confidence 6778889987 788776654
No 97
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=43.76 E-value=17 Score=21.75 Aligned_cols=19 Identities=21% Similarity=0.350 Sum_probs=13.9
Q ss_pred CCeeeeEEEe-ecCHHHHhh
Q 037293 14 AGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 14 ggkstGfa~I-YDs~d~akk 32 (82)
.|++.|||.| |+|.+.+..
T Consensus 78 ~g~~~g~afV~f~~~~~A~~ 97 (118)
T 2khc_A 78 TSLSKCFGFVSFDNPDSAQV 97 (118)
T ss_dssp SSCCCCEEEEEEESSHHHHH
T ss_pred CCCcCcEEEEEECCHHHHHH
Confidence 4778899987 777776643
No 98
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=43.52 E-value=24 Score=22.06 Aligned_cols=20 Identities=25% Similarity=0.376 Sum_probs=14.8
Q ss_pred CCCeeeeEEEe-ecCHHHHhh
Q 037293 13 NAGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 13 GggkstGfa~I-YDs~d~akk 32 (82)
..|++.|||.| |++.+.|..
T Consensus 83 ~tg~~~G~afV~F~~~~~A~~ 103 (129)
T 2kxn_B 83 QSRRSRGFAFVYFENVDDAKE 103 (129)
T ss_dssp SSSCCCCEEEEEESCHHHHHH
T ss_pred CCCccceEEEEEECCHHHHHH
Confidence 35678899987 788777654
No 99
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=43.41 E-value=13 Score=22.78 Aligned_cols=18 Identities=28% Similarity=0.309 Sum_probs=13.7
Q ss_pred CCeeeeEEEe-ecCHHHHh
Q 037293 14 AGRVTFAGWV-FESVESKS 31 (82)
Q Consensus 14 ggkstGfa~I-YDs~d~ak 31 (82)
++.+.|||.| |++.++|.
T Consensus 52 ~~~~~G~~FV~f~~~~~A~ 70 (105)
T 2pe8_A 52 PDDEAVRIFLEFERVESAI 70 (105)
T ss_dssp CTTTSEEEEEEESSHHHHH
T ss_pred CCCCcEEEEEEECCHHHHH
Confidence 4678899987 88877664
No 100
>2b8i_A PAS factor; four helix bundle, lipid binding protein; 1.80A {Vibrio vulnificus}
Probab=42.95 E-value=1.3 Score=27.96 Aligned_cols=24 Identities=8% Similarity=0.209 Sum_probs=20.6
Q ss_pred EEeecCHHHHhhcccc----cccCCccc
Q 037293 21 GWVFESVESKSRFSFS----FKNGLDTK 44 (82)
Q Consensus 21 a~IYDs~d~akk~Epk----~Rngl~ek 44 (82)
.+|||++..+..-||. +|..|+|.
T Consensus 7 tliydtL~~La~~~PeqhA~iRQ~LYeq 34 (77)
T 2b8i_A 7 ALIYETLVNLANQDPEQHATIRQNLYEQ 34 (77)
T ss_dssp HHHHHHHHHHHHSCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 3799999999999999 88877764
No 101
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=42.13 E-value=29 Score=19.15 Aligned_cols=20 Identities=20% Similarity=0.235 Sum_probs=14.5
Q ss_pred CCCeeeeEEEe-ecCHHHHhh
Q 037293 13 NAGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 13 GggkstGfa~I-YDs~d~akk 32 (82)
-.|.+.|||.| |+|.++|..
T Consensus 44 ~~~~~~g~afV~f~~~~~a~~ 64 (85)
T 3mdf_A 44 ETEKHRGFAFVEFELAEDAAA 64 (85)
T ss_dssp TTTEECSEEEEEESSHHHHHH
T ss_pred CCCccccEEEEEECCHHHHHH
Confidence 45778889886 777777654
No 102
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=41.64 E-value=19 Score=20.88 Aligned_cols=20 Identities=20% Similarity=0.235 Sum_probs=14.0
Q ss_pred CCCeeeeEEEe-ecCHHHHhh
Q 037293 13 NAGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 13 GggkstGfa~I-YDs~d~akk 32 (82)
-.|.+.|||.| |+|.++|..
T Consensus 49 ~~~~~~g~afV~f~~~~~A~~ 69 (102)
T 2cqb_A 49 ETEKHRGFAFVEFELAEDAAA 69 (102)
T ss_dssp SSCCCSSEEEECCSSHHHHHH
T ss_pred CCCCcceEEEEEECCHHHHHH
Confidence 34678899987 677766643
No 103
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=41.52 E-value=12 Score=20.88 Aligned_cols=18 Identities=17% Similarity=0.209 Sum_probs=13.0
Q ss_pred CeeeeEEEe-ecCHHHHhh
Q 037293 15 GRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 15 gkstGfa~I-YDs~d~akk 32 (82)
+++.|||.| |+|.++|..
T Consensus 44 ~~~~g~afV~f~~~~~a~~ 62 (88)
T 4a8x_A 44 HLSKGYAYVEFENPDEAEK 62 (88)
T ss_dssp EEECSEEEEEESSHHHHHH
T ss_pred CCCCcEEEEEEecHHHHHH
Confidence 458889987 777777653
No 104
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=41.51 E-value=32 Score=22.02 Aligned_cols=20 Identities=15% Similarity=0.097 Sum_probs=14.6
Q ss_pred CCCeeeeEEEe-ecCHHHHhh
Q 037293 13 NAGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 13 GggkstGfa~I-YDs~d~akk 32 (82)
..|.+.|||+| |.+.+.|..
T Consensus 109 ~~g~~~g~afV~f~~~~~A~~ 129 (165)
T 1rk8_A 109 RTGFSKGYALVEYETHKQALA 129 (165)
T ss_dssp TTSSEEEEEEEEESSHHHHHH
T ss_pred CCCcEeeEEEEEECCHHHHHH
Confidence 35778899988 777776643
No 105
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=41.13 E-value=22 Score=20.68 Aligned_cols=19 Identities=16% Similarity=0.197 Sum_probs=13.3
Q ss_pred CCeeeeEEEe-ecCHHHHhh
Q 037293 14 AGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 14 ggkstGfa~I-YDs~d~akk 32 (82)
.|++.|||.| |++.+.|..
T Consensus 51 ~g~~~g~afV~f~~~~~A~~ 70 (106)
T 2dgp_A 51 TGMHKGCAFLTYCERESALK 70 (106)
T ss_dssp SCSCCSEEEEEESSHHHHHH
T ss_pred CCCcceEEEEEECCHHHHHH
Confidence 4677889988 667666543
No 106
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=40.52 E-value=20 Score=21.65 Aligned_cols=19 Identities=26% Similarity=0.235 Sum_probs=14.2
Q ss_pred CCeeeeEEEe-ecCHHHHhh
Q 037293 14 AGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 14 ggkstGfa~I-YDs~d~akk 32 (82)
.|.+.|||.| |+|.+.|..
T Consensus 72 ~g~~~g~afV~f~~~~~A~~ 91 (124)
T 2kt5_A 72 SGRSLGTADVHFERRADALK 91 (124)
T ss_dssp SSSCCSEEEEEESSHHHHHH
T ss_pred CCCEeeEEEEEECCHHHHHH
Confidence 5678899987 778777654
No 107
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=40.48 E-value=10 Score=22.94 Aligned_cols=19 Identities=16% Similarity=0.239 Sum_probs=14.2
Q ss_pred CCeeeeEEEe-ecCHHHHhh
Q 037293 14 AGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 14 ggkstGfa~I-YDs~d~akk 32 (82)
.|++.|||.| |+|.+.|.+
T Consensus 53 ~g~~~G~afV~F~~~~~a~~ 72 (114)
T 2cpy_A 53 NGQGLGQALVQFKNEDDARK 72 (114)
T ss_dssp TSSCSSCEEEECSSHHHHHH
T ss_pred CCCcceEEEEEECCHHHHHH
Confidence 5778899987 677776654
No 108
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.81 E-value=14 Score=22.91 Aligned_cols=17 Identities=35% Similarity=0.345 Sum_probs=12.1
Q ss_pred CeeeeEEEe-ecCHHHHh
Q 037293 15 GRVTFAGWV-FESVESKS 31 (82)
Q Consensus 15 gkstGfa~I-YDs~d~ak 31 (82)
|++.|||.| |++.++|.
T Consensus 53 g~~~G~afV~F~~~~~a~ 70 (109)
T 2dnn_A 53 GRNNGNGLVKFLSPQDTF 70 (109)
T ss_dssp CCCCSEEEEECSSHHHHH
T ss_pred CCCCeEEEEEECCHHHHH
Confidence 788899988 55655544
No 109
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=38.13 E-value=7.2 Score=22.46 Aligned_cols=18 Identities=22% Similarity=0.324 Sum_probs=12.8
Q ss_pred CeeeeEEEe-ecCHHHHhh
Q 037293 15 GRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 15 gkstGfa~I-YDs~d~akk 32 (82)
|.+.|||.| |+|.++|..
T Consensus 48 ~~~~g~afV~f~~~~~A~~ 66 (97)
T 1nu4_A 48 LKMRGQAFVIFKEVSSATN 66 (97)
T ss_dssp HHHTTCEEEEESSHHHHHH
T ss_pred CCcCcEEEEEeCCHHHHHH
Confidence 456688877 788876644
No 110
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=38.01 E-value=17 Score=22.62 Aligned_cols=18 Identities=11% Similarity=0.340 Sum_probs=12.9
Q ss_pred CCeeeeEEEe-ecCHHHHh
Q 037293 14 AGRVTFAGWV-FESVESKS 31 (82)
Q Consensus 14 ggkstGfa~I-YDs~d~ak 31 (82)
.|++.|||.| |.+.+.|.
T Consensus 88 ~g~~~g~afV~f~~~~~A~ 106 (143)
T 3egn_A 88 EGRMKGQAFIGLPNEKAAA 106 (143)
T ss_dssp ETTTEEEEEEECSSHHHHH
T ss_pred CCCcccEEEEEeCCHHHHH
Confidence 3677889987 67776654
No 111
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=36.95 E-value=39 Score=20.22 Aligned_cols=20 Identities=15% Similarity=0.174 Sum_probs=14.6
Q ss_pred CCCeeeeEEEe-ecCHHHHhh
Q 037293 13 NAGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 13 GggkstGfa~I-YDs~d~akk 32 (82)
..|.+.|||.| |+|.++|..
T Consensus 73 ~~~~~~g~afV~f~~~~~a~~ 93 (124)
T 2jwn_A 73 FSGHPKGYAYIEFAERNSVDA 93 (124)
T ss_dssp TTSSCEEEEEEEESSHHHHHH
T ss_pred CCCCcccEEEEEECCHHHHHH
Confidence 35778899976 777777654
No 112
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=36.58 E-value=23 Score=21.20 Aligned_cols=16 Identities=13% Similarity=0.175 Sum_probs=11.7
Q ss_pred eeeeEEEe-ecCHHHHh
Q 037293 16 RVTFAGWV-FESVESKS 31 (82)
Q Consensus 16 kstGfa~I-YDs~d~ak 31 (82)
++.|||.| |++.++|.
T Consensus 61 ~~~G~afV~f~~~~~A~ 77 (111)
T 2cpi_A 61 GPSASAYVTYIRSEDAL 77 (111)
T ss_dssp CCCEEEEEEESSHHHHH
T ss_pred CCCeEEEEEECcHHHHH
Confidence 56699987 77777664
No 113
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=36.52 E-value=29 Score=21.67 Aligned_cols=19 Identities=11% Similarity=0.095 Sum_probs=14.2
Q ss_pred CCeeeeEEEe-ecCHHHHhh
Q 037293 14 AGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 14 ggkstGfa~I-YDs~d~akk 32 (82)
.|.+.|||.| |+|.+.|..
T Consensus 108 ~g~~~g~afV~f~~~~~a~~ 127 (158)
T 2kn4_A 108 TKESRGFAFVRFHDKRDAED 127 (158)
T ss_dssp CTTSCCEEEEEESBHHHHHH
T ss_pred CCccceEEEEEECCHHHHHH
Confidence 5778899988 777776643
No 114
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=35.57 E-value=27 Score=21.05 Aligned_cols=18 Identities=33% Similarity=0.455 Sum_probs=12.4
Q ss_pred CeeeeEEEe-ecCHHHHhh
Q 037293 15 GRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 15 gkstGfa~I-YDs~d~akk 32 (82)
+.+.|||.| |++.|+|..
T Consensus 42 ~~~kg~afV~f~~~~~A~~ 60 (115)
T 4f25_A 42 NGSKGYGFVHFETQEAAER 60 (115)
T ss_dssp TEEEEEEEEEESCHHHHHH
T ss_pred CCCCceEEEEECCHHHHHH
Confidence 446788876 777777644
No 115
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=35.10 E-value=26 Score=20.33 Aligned_cols=16 Identities=31% Similarity=0.439 Sum_probs=11.9
Q ss_pred eeeEEEe-ecCHHHHhh
Q 037293 17 VTFAGWV-FESVESKSR 32 (82)
Q Consensus 17 stGfa~I-YDs~d~akk 32 (82)
+.|||.| |++.++|..
T Consensus 54 ~~g~afV~f~~~~~a~~ 70 (103)
T 2cq3_A 54 SKGFGFVTFENSADADR 70 (103)
T ss_dssp TCCEEEEEESCHHHHHH
T ss_pred CcEEEEEEECCHHHHHH
Confidence 6788887 777777654
No 116
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=34.99 E-value=48 Score=21.13 Aligned_cols=19 Identities=21% Similarity=0.469 Sum_probs=14.2
Q ss_pred CCeeeeEEEe-ecCHHHHhh
Q 037293 14 AGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 14 ggkstGfa~I-YDs~d~akk 32 (82)
.|++.|||.| |+|.++|..
T Consensus 163 ~g~~~g~afV~F~~~~~A~~ 182 (216)
T 2qfj_A 163 TGKHKGYGFIEYEKAQSSQD 182 (216)
T ss_dssp TCCEEEEEEEEESSHHHHHH
T ss_pred CCCcCceEEEEecCHHHHHH
Confidence 5788999987 777776643
No 117
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=34.49 E-value=40 Score=20.66 Aligned_cols=19 Identities=5% Similarity=0.170 Sum_probs=14.0
Q ss_pred CCeeeeEEEe-ecCHHHHhh
Q 037293 14 AGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 14 ggkstGfa~I-YDs~d~akk 32 (82)
.|.+.|||.| |+|.++|.+
T Consensus 132 ~g~~~g~afV~f~~~~~A~~ 151 (172)
T 2g4b_A 132 TGLSKGYAFCEYVDINVTDQ 151 (172)
T ss_dssp TCSEEEEEEEEESSTTHHHH
T ss_pred CCCcceEEEEEeCCHHHHHH
Confidence 6778899987 777776643
No 118
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=33.95 E-value=36 Score=21.39 Aligned_cols=20 Identities=10% Similarity=0.247 Sum_probs=14.5
Q ss_pred CCCeeeeEEEe-ecCHHHHhh
Q 037293 13 NAGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 13 GggkstGfa~I-YDs~d~akk 32 (82)
+.+++.||+.| |.+.++|.+
T Consensus 66 ~~~~~~G~~FV~F~~~e~A~~ 86 (118)
T 3ue2_A 66 EDAEIIVKIFVEFSIASETHK 86 (118)
T ss_dssp TTCEEEEEEEEEESSHHHHHH
T ss_pred cCCcceEEEEEEECCHHHHHH
Confidence 35788899988 677776643
No 119
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=32.70 E-value=57 Score=19.86 Aligned_cols=18 Identities=11% Similarity=0.063 Sum_probs=13.8
Q ss_pred CeeeeEEEe-ecCHHHHhh
Q 037293 15 GRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 15 gkstGfa~I-YDs~d~akk 32 (82)
+++.|||.| |.|.++|..
T Consensus 44 ~~~~g~afV~f~~~~~A~~ 62 (175)
T 3nmr_A 44 PQSKGCCFVTFYTRKAALE 62 (175)
T ss_dssp CEEEEEEEEEESSHHHHHH
T ss_pred CCcceEEEEEECCHHHHHH
Confidence 489999988 777776654
No 120
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=32.65 E-value=18 Score=21.65 Aligned_cols=17 Identities=29% Similarity=0.393 Sum_probs=11.7
Q ss_pred eeeeEEEe-ecCHHHHhh
Q 037293 16 RVTFAGWV-FESVESKSR 32 (82)
Q Consensus 16 kstGfa~I-YDs~d~akk 32 (82)
.+.|||.| |++.++|..
T Consensus 67 ~~kg~afV~f~~~~~A~~ 84 (109)
T 2err_A 67 GSKGFGFVTFENSADADR 84 (109)
T ss_dssp BCTTEEEEECCCSHHHHH
T ss_pred CCceEEEEEECCHHHHHH
Confidence 47788877 777666543
No 121
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=32.22 E-value=20 Score=22.78 Aligned_cols=18 Identities=17% Similarity=0.277 Sum_probs=12.8
Q ss_pred CCeeeeEEEe-ecCHHHHh
Q 037293 14 AGRVTFAGWV-FESVESKS 31 (82)
Q Consensus 14 ggkstGfa~I-YDs~d~ak 31 (82)
.|++.|||.| |++.++|.
T Consensus 68 ~~~~rG~aFV~F~~~~~A~ 86 (127)
T 2a3j_A 68 SDDNSGKAYIVFATQESAQ 86 (127)
T ss_dssp CCSSCCCEEEEESSHHHHH
T ss_pred CCCcCCEEEEEECCHHHHH
Confidence 3677889887 77766654
No 122
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=32.14 E-value=32 Score=21.06 Aligned_cols=19 Identities=32% Similarity=0.440 Sum_probs=13.3
Q ss_pred CCCeeeeEEEe-ecCHHHHh
Q 037293 13 NAGRVTFAGWV-FESVESKS 31 (82)
Q Consensus 13 GggkstGfa~I-YDs~d~ak 31 (82)
..|++.|||.| |.|.++|.
T Consensus 40 ~~g~~~g~afV~f~~~~~a~ 59 (167)
T 2cjk_A 40 ATGRSRGFGFLSFEKPSSVD 59 (167)
T ss_dssp TTSSCCSCEEEEESSTHHHH
T ss_pred CCCCccceEEEEEccHHHHH
Confidence 35778889987 66666654
No 123
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=37.50 E-value=10 Score=22.82 Aligned_cols=20 Identities=20% Similarity=0.287 Sum_probs=13.5
Q ss_pred CCCeeeeEEEe-ecCHHHHhh
Q 037293 13 NAGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 13 GggkstGfa~I-YDs~d~akk 32 (82)
-.|.+.|||.| |+|.++|..
T Consensus 52 ~~g~~~g~afV~f~~~~~A~~ 72 (116)
T 2lcw_A 52 ETGKLKGEATVSFDDPPSAKA 72 (116)
Confidence 34678899987 666665543
No 124
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.20 E-value=15 Score=21.33 Aligned_cols=17 Identities=0% Similarity=0.112 Sum_probs=12.0
Q ss_pred eeeeEEEe-ecCHHHHhh
Q 037293 16 RVTFAGWV-FESVESKSR 32 (82)
Q Consensus 16 kstGfa~I-YDs~d~akk 32 (82)
.+.|||.| |++.++|..
T Consensus 54 ~~~g~afV~f~~~~~a~~ 71 (97)
T 2e5j_A 54 GPRRRAFLHYPDSAAAQQ 71 (97)
T ss_dssp TTTTEEEEECSSHHHHHH
T ss_pred CCCcEEEEEECCHHHHHH
Confidence 56788877 777776643
No 125
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=30.96 E-value=33 Score=23.47 Aligned_cols=18 Identities=33% Similarity=0.501 Sum_probs=13.6
Q ss_pred CCeeeeEEEe-ecCHHHHh
Q 037293 14 AGRVTFAGWV-FESVESKS 31 (82)
Q Consensus 14 ggkstGfa~I-YDs~d~ak 31 (82)
.|++.|||.| |+|.++|.
T Consensus 133 ~g~~~g~afV~f~~~~~A~ 151 (261)
T 3sde_A 133 RGRATGKGFVEFAAKPPAR 151 (261)
T ss_dssp TSCEEEEEEEEESSHHHHH
T ss_pred CCCcCcEEEEEeCCHHHHH
Confidence 5788999987 77776654
No 126
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=29.96 E-value=27 Score=20.28 Aligned_cols=17 Identities=12% Similarity=0.182 Sum_probs=13.6
Q ss_pred eeeEEEe-ecCHHHHhhc
Q 037293 17 VTFAGWV-FESVESKSRF 33 (82)
Q Consensus 17 stGfa~I-YDs~d~akk~ 33 (82)
+.|||.| |++.++|...
T Consensus 47 srGfaFV~F~~~~~A~~~ 64 (89)
T 3d2w_A 47 FRAFAFVTFADDKVAQSL 64 (89)
T ss_dssp CCSEEEEEESCHHHHHHH
T ss_pred CCCEEEEEECCHHHHHHH
Confidence 6799987 8999888743
No 127
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=28.72 E-value=26 Score=21.81 Aligned_cols=19 Identities=16% Similarity=0.375 Sum_probs=13.4
Q ss_pred CCeeeeEEEe-ecCHHHHhh
Q 037293 14 AGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 14 ggkstGfa~I-YDs~d~akk 32 (82)
.|.+.|||.| |+|.++|.+
T Consensus 132 ~~~~~g~afV~f~~~~~A~~ 151 (175)
T 1fje_B 132 DGKSKGIAYIEFKSEADAEK 151 (175)
T ss_dssp SSSCCSEEEEECSSHHHHHH
T ss_pred CCCCceEEEEEECCHHHHHH
Confidence 4677888887 677776643
No 128
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.68 E-value=24 Score=20.72 Aligned_cols=18 Identities=17% Similarity=0.111 Sum_probs=12.7
Q ss_pred CeeeeEEEe-ecCHHHHhh
Q 037293 15 GRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 15 gkstGfa~I-YDs~d~akk 32 (82)
+.+.|||+| |++.++|..
T Consensus 58 ~~~~g~afV~f~~~~~A~~ 76 (109)
T 1x4a_A 58 RGGPPFAFVEFEDPRDAED 76 (109)
T ss_dssp SSSSCCEEEEESCHHHHHH
T ss_pred CCCCcEEEEEECCHHHHHH
Confidence 346788877 788877654
No 129
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.65 E-value=45 Score=19.22 Aligned_cols=16 Identities=13% Similarity=0.009 Sum_probs=11.1
Q ss_pred eeeEEEe-ecCHHHHhh
Q 037293 17 VTFAGWV-FESVESKSR 32 (82)
Q Consensus 17 stGfa~I-YDs~d~akk 32 (82)
+.|||.| |+|.+.|..
T Consensus 54 ~~g~afV~f~~~~~a~~ 70 (103)
T 2cqi_A 54 NDPYCFVEFYEHRDAAA 70 (103)
T ss_dssp SCCEEEEEESSHHHHHH
T ss_pred CCCEEEEEECCHHHHHH
Confidence 4678877 777776643
No 130
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=27.64 E-value=37 Score=23.03 Aligned_cols=19 Identities=16% Similarity=0.258 Sum_probs=14.3
Q ss_pred CCeeeeEEEe-ecCHHHHhh
Q 037293 14 AGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 14 ggkstGfa~I-YDs~d~akk 32 (82)
.|.+.|||.| |+|.++|.+
T Consensus 222 ~g~~~g~afV~f~~~~~A~~ 241 (284)
T 3smz_A 222 DGQLKGFAVLEYETAEMAEE 241 (284)
T ss_dssp SCCEEEEEEEECSSHHHHHH
T ss_pred CCCcccEEEEEeCCHHHHHH
Confidence 4778999988 677776654
No 131
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=27.52 E-value=52 Score=20.63 Aligned_cols=18 Identities=6% Similarity=0.152 Sum_probs=13.3
Q ss_pred CCeeeeEEEe-ecCHHHHh
Q 037293 14 AGRVTFAGWV-FESVESKS 31 (82)
Q Consensus 14 ggkstGfa~I-YDs~d~ak 31 (82)
.|.+.|||.| |+|.++|.
T Consensus 152 ~~~~~g~afV~f~~~~~a~ 170 (198)
T 2yh0_A 152 TGLSKGYAFCEYVDINVTD 170 (198)
T ss_dssp TCSEEEEEEEEESSSSHHH
T ss_pred CCCcceEEEEEECCHHHHH
Confidence 6778899987 77766654
No 132
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=27.24 E-value=59 Score=22.31 Aligned_cols=19 Identities=21% Similarity=0.130 Sum_probs=14.0
Q ss_pred CCeeeeEEEe-ecCHHHHhh
Q 037293 14 AGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 14 ggkstGfa~I-YDs~d~akk 32 (82)
.|++.|||.| |++.++|.+
T Consensus 108 tg~skGfaFV~f~~~~~a~~ 127 (229)
T 3q2s_C 108 NGQSKGFALVGVGSEASSKK 127 (229)
T ss_dssp TCCEEEEEEEEESCTTHHHH
T ss_pred CCccceEEEEEECCHHHHHH
Confidence 6789999988 677655543
No 133
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=27.06 E-value=13 Score=24.10 Aligned_cols=18 Identities=39% Similarity=0.353 Sum_probs=12.9
Q ss_pred CeeeeEEEe-ecCHHHHhh
Q 037293 15 GRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 15 gkstGfa~I-YDs~d~akk 32 (82)
|++.|||.| |+|.++|.+
T Consensus 83 g~srGfaFV~F~~~e~A~~ 101 (139)
T 2hgn_A 83 GRVTGEADVEFATHEEAVA 101 (139)
T ss_dssp SCSSCCCEEECSHHHHHHH
T ss_pred CCCceEEEEEeCCHHHHHH
Confidence 788999987 566665543
No 134
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=26.79 E-value=31 Score=19.57 Aligned_cols=17 Identities=12% Similarity=0.030 Sum_probs=11.9
Q ss_pred eeeeEEEe-ecCHHHHhh
Q 037293 16 RVTFAGWV-FESVESKSR 32 (82)
Q Consensus 16 kstGfa~I-YDs~d~akk 32 (82)
.+.|||.| |+|.++|..
T Consensus 42 ~~~g~afV~f~~~~~A~~ 59 (93)
T 2cqh_A 42 LKSGYAFVDYPDQNWAIR 59 (93)
T ss_dssp EETTEEEECCSCHHHHHH
T ss_pred cCCCEEEEEECCHHHHHH
Confidence 35789988 777776543
No 135
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.34 E-value=33 Score=21.02 Aligned_cols=17 Identities=18% Similarity=0.241 Sum_probs=12.2
Q ss_pred CeeeeEEEe-ecCHHHHh
Q 037293 15 GRVTFAGWV-FESVESKS 31 (82)
Q Consensus 15 gkstGfa~I-YDs~d~ak 31 (82)
+++.|||.| |++.+.|.
T Consensus 51 ~~~rGfaFVeF~~~~~A~ 68 (100)
T 2d9o_A 51 SKKPGTAVVEFATVKAAE 68 (100)
T ss_dssp SSSSSEEEEEESCHHHHH
T ss_pred cCCCCEEEEEECCHHHHH
Confidence 478899987 77766553
No 136
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=26.26 E-value=78 Score=20.89 Aligned_cols=20 Identities=10% Similarity=0.247 Sum_probs=15.4
Q ss_pred CCCeeeeEEEe-ecCHHHHhh
Q 037293 13 NAGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 13 GggkstGfa~I-YDs~d~akk 32 (82)
..|++.||+.| |++.++|.+
T Consensus 170 ~~~~~~G~~fv~f~~~~~a~~ 190 (222)
T 3dxb_A 170 EDAEIIVKIFVEFSIASETHK 190 (222)
T ss_dssp TTCCEEEEEEEEESSHHHHHH
T ss_pred cCcCceeEEEEEECCHHHHHH
Confidence 35688999999 888877653
No 137
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.59 E-value=23 Score=20.43 Aligned_cols=17 Identities=24% Similarity=0.390 Sum_probs=11.8
Q ss_pred eeeeEEEe-ecCHHHHhh
Q 037293 16 RVTFAGWV-FESVESKSR 32 (82)
Q Consensus 16 kstGfa~I-YDs~d~akk 32 (82)
.+.|||.| |++.+.|.+
T Consensus 47 ~~~g~afV~f~~~~~a~~ 64 (97)
T 1x5p_A 47 PPRNCAFVTYEKMESADQ 64 (97)
T ss_dssp TTTTEEEEEESSHHHHHH
T ss_pred CCCCEEEEEECCHHHHHH
Confidence 56788877 777776544
No 138
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=25.45 E-value=31 Score=21.64 Aligned_cols=19 Identities=11% Similarity=0.095 Sum_probs=14.2
Q ss_pred CCeeeeEEEe-ecCHHHHhh
Q 037293 14 AGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 14 ggkstGfa~I-YDs~d~akk 32 (82)
.|++.|||.| |+|.+.|..
T Consensus 85 ~g~~~G~afV~F~~~~~A~~ 104 (135)
T 2lea_A 85 TKESRGFAFVRFHDKRDAED 104 (135)
T ss_dssp SSSCCSCCEEECSCHHHHHH
T ss_pred CCccceEEEEEECCHHHHHH
Confidence 5678888887 778777654
No 139
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=25.42 E-value=47 Score=22.15 Aligned_cols=18 Identities=28% Similarity=0.373 Sum_probs=14.3
Q ss_pred CeeeeEEEe-ecCHHHHhh
Q 037293 15 GRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 15 gkstGfa~I-YDs~d~akk 32 (82)
|.+.|||.| |+|.+.|.+
T Consensus 147 ~~~kG~aFVeF~~~e~A~~ 165 (193)
T 2voo_A 147 KAFKGSIFVVFDSIESAKK 165 (193)
T ss_dssp CCEEEEEEEEESSHHHHHH
T ss_pred CCcccEEEEEECCHHHHHH
Confidence 778899987 888877754
No 140
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=24.76 E-value=23 Score=21.01 Aligned_cols=17 Identities=12% Similarity=0.210 Sum_probs=11.0
Q ss_pred CeeeeEEEe-ecCHHHHh
Q 037293 15 GRVTFAGWV-FESVESKS 31 (82)
Q Consensus 15 gkstGfa~I-YDs~d~ak 31 (82)
+.+.|||.| |+|.++|.
T Consensus 44 ~~~~g~afV~f~~~~~A~ 61 (115)
T 3lqv_A 44 PETRGTAYVVYEDIFDAK 61 (115)
T ss_dssp TTTTTCEEEEESSHHHHH
T ss_pred CCCCcEEEEEECCHHHHH
Confidence 445677776 67776654
No 141
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=24.26 E-value=45 Score=21.99 Aligned_cols=19 Identities=26% Similarity=0.235 Sum_probs=14.0
Q ss_pred CCeeeeEEEe-ecCHHHHhh
Q 037293 14 AGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 14 ggkstGfa~I-YDs~d~akk 32 (82)
.|.+.|||.| |++.+.|..
T Consensus 125 ~g~~kG~afV~F~~~~~A~~ 144 (177)
T 2f3j_A 125 SGRSLGTADVHFERRADALK 144 (177)
T ss_dssp TSSCSCCEEEEESCHHHHHH
T ss_pred CCCEeeEEEEEeCCHHHHHH
Confidence 4778889977 778776653
No 142
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=23.71 E-value=95 Score=20.32 Aligned_cols=20 Identities=20% Similarity=0.200 Sum_probs=14.3
Q ss_pred CCCeeeeEEEe-ecCHHHHhh
Q 037293 13 NAGRVTFAGWV-FESVESKSR 32 (82)
Q Consensus 13 GggkstGfa~I-YDs~d~akk 32 (82)
..|++.|||.| |.+.++|.+
T Consensus 52 ~tg~~~G~afV~F~~~~~A~~ 72 (213)
T 4f02_A 52 ITRRSLGYAYVNFQQPADAER 72 (213)
T ss_dssp TTCCEEEEEEEEESSHHHHHH
T ss_pred CCCCccccccceeCCHHHHHH
Confidence 45788999988 666666543
No 143
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=22.34 E-value=22 Score=22.00 Aligned_cols=15 Identities=20% Similarity=0.308 Sum_probs=10.6
Q ss_pred CCeeeecccccCCCCeee
Q 037293 1 MPLPVNDHRNLVNAGRVT 18 (82)
Q Consensus 1 ~~I~VfgfrT~FGggkst 18 (82)
|.|+|.|. .|.||||
T Consensus 1 m~I~l~G~---~GsGKsT 15 (168)
T 2pt5_A 1 MRIYLIGF---MCSGKST 15 (168)
T ss_dssp CEEEEESC---TTSCHHH
T ss_pred CeEEEECC---CCCCHHH
Confidence 66777665 6788876
No 144
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=22.27 E-value=30 Score=19.99 Aligned_cols=17 Identities=6% Similarity=0.141 Sum_probs=11.5
Q ss_pred eeeeEEEe-ecCHHHHhh
Q 037293 16 RVTFAGWV-FESVESKSR 32 (82)
Q Consensus 16 kstGfa~I-YDs~d~akk 32 (82)
++.|||.| |+|.++|..
T Consensus 61 ~~~g~afV~f~~~~~A~~ 78 (101)
T 2la4_A 61 PEKGCCFIKYDTHEQAAV 78 (101)
T ss_dssp TTTTEEEEECSSHHHHHH
T ss_pred cCCCEEEEEECCHHHHHH
Confidence 45688877 777776643
No 145
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.53 E-value=27 Score=19.67 Aligned_cols=17 Identities=12% Similarity=0.176 Sum_probs=13.2
Q ss_pred eeeEEEe-ecCHHHHhhc
Q 037293 17 VTFAGWV-FESVESKSRF 33 (82)
Q Consensus 17 stGfa~I-YDs~d~akk~ 33 (82)
+.|||.| |+|.++|...
T Consensus 41 ~~g~afV~f~~~~~a~~~ 58 (88)
T 1wf0_A 41 FRAFAFVTFADDQIAQSL 58 (88)
T ss_dssp CCSCCEEECSCHHHHHHT
T ss_pred CCCEEEEEECCHHHHHHH
Confidence 5788877 8899988643
No 146
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=21.27 E-value=37 Score=19.19 Aligned_cols=16 Identities=19% Similarity=0.166 Sum_probs=11.3
Q ss_pred eeeeEEEe-ecCHHHHh
Q 037293 16 RVTFAGWV-FESVESKS 31 (82)
Q Consensus 16 kstGfa~I-YDs~d~ak 31 (82)
++.|||.| |+|.+.|.
T Consensus 38 ~~~g~afV~f~~~~~a~ 54 (88)
T 1wg1_A 38 RNKRTAFVTLLNGEQAQ 54 (88)
T ss_dssp GGGTEEEECCSCHHHHH
T ss_pred CCCcEEEEEECCHHHHH
Confidence 66789987 66766654
No 147
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=20.64 E-value=55 Score=22.25 Aligned_cols=19 Identities=21% Similarity=0.314 Sum_probs=13.7
Q ss_pred CeeeeEEEe-ecCHHHHhhc
Q 037293 15 GRVTFAGWV-FESVESKSRF 33 (82)
Q Consensus 15 gkstGfa~I-YDs~d~akk~ 33 (82)
|.+.|||.| |+|.+.|.+-
T Consensus 251 g~~~g~afV~F~~~~~A~~A 270 (292)
T 2ghp_A 251 SFNNCCAFMVFENKDSAERA 270 (292)
T ss_dssp -CCCEEEEEEESSHHHHHHH
T ss_pred CCCceEEEEEeCCHHHHHHH
Confidence 788999988 6777776543
Done!