BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037294
(161 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GME|A Chain A, Crystal Structure And Assembly Of An Eukaryotic Small Heat
Shock Protein
pdb|1GME|B Chain B, Crystal Structure And Assembly Of An Eukaryotic Small Heat
Shock Protein
pdb|1GME|C Chain C, Crystal Structure And Assembly Of An Eukaryotic Small Heat
Shock Protein
pdb|1GME|D Chain D, Crystal Structure And Assembly Of An Eukaryotic Small Heat
Shock Protein
Length = 151
Score = 163 bits (413), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 91/152 (59%), Positives = 119/152 (78%), Gaps = 6/152 (3%)
Query: 11 RTSNIFDPLSPDIW-DPFQDLPFSSLSLSAPRSDLSTETAALANTRIDWRETPEAHIFKA 69
R SN+FDP + D+W DPF S+ S +ETAA AN R+DW+ETPEAH+FKA
Sbjct: 5 RRSNVFDPFA-DLWADPFDTF----RSIVPAISGGGSETAAFANARMDWKETPEAHVFKA 59
Query: 70 DLPGMRKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQFLRRFRLPENARID 129
DLPG++K+EVKVE+E+GNVL +SGER KE E+++D WHRVERSSG+F+RRFRL E+A+++
Sbjct: 60 DLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVE 119
Query: 130 QVKASTEYGVLTVTVPKVIADRPDVRAIEISG 161
+VKA E GVLTVTVPK +P+V+AI+ISG
Sbjct: 120 EVKAGLENGVLTVTVPKAEVKKPEVKAIQISG 151
>pdb|2BYU|A Chain A, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|B Chain B, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|C Chain C, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|D Chain D, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|E Chain E, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|F Chain F, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|G Chain G, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|H Chain H, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|I Chain I, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|J Chain J, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|K Chain K, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|L Chain L, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
Length = 101
Score = 130 bits (326), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 71/109 (65%), Positives = 91/109 (83%), Gaps = 8/109 (7%)
Query: 53 NTRIDWRETPEAHIFKADLPGMRKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERS 112
N R+DW+ETPEAH+FKADLPG++K+EVKVE+E+GNVL +SGER KE E+++D WHRVERS
Sbjct: 1 NARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERS 60
Query: 113 SGQFLRRFRLPENARIDQVKASTEYGVLTVTVPKVIADRPDVRAIEISG 161
SG+F+RRFRL E+A++++VKA E GVLTVTVPK AI+ISG
Sbjct: 61 SGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKA--------AIQISG 101
>pdb|2H50|A Chain A, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|B Chain B, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|C Chain C, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|D Chain D, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|E Chain E, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|F Chain F, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|G Chain G, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|H Chain H, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|I Chain I, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|J Chain J, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|K Chain K, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|L Chain L, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|M Chain M, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|N Chain N, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|O Chain O, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|P Chain P, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|Q Chain Q, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|R Chain R, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|S Chain S, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|T Chain T, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|U Chain U, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|V Chain V, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|W Chain W, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|X Chain X, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|A Chain A, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|B Chain B, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|C Chain C, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|D Chain D, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|E Chain E, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|F Chain F, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|G Chain G, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|H Chain H, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|I Chain I, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|J Chain J, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|K Chain K, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|L Chain L, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|M Chain M, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|N Chain N, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|O Chain O, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|P Chain P, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|Q Chain Q, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|R Chain R, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|S Chain S, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|T Chain T, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|U Chain U, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|V Chain V, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|W Chain W, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|X Chain X, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
Length = 93
Score = 124 bits (311), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/93 (69%), Positives = 84/93 (90%)
Query: 54 TRIDWRETPEAHIFKADLPGMRKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSS 113
R+DW+ETPEAH+FKADLPG++K+EVKVE+E+GNVL +SGER KE E+++D WHRVERSS
Sbjct: 1 ARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSS 60
Query: 114 GQFLRRFRLPENARIDQVKASTEYGVLTVTVPK 146
G+F+RRFRL E+A++++VKA E GVLTVTVPK
Sbjct: 61 GKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPK 93
>pdb|3GT6|A Chain A, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
pdb|3GT6|B Chain B, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
pdb|3GUF|A Chain A, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
pdb|3GUF|B Chain B, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
Length = 103
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 57/92 (61%), Gaps = 1/92 (1%)
Query: 55 RIDWRETPEAHIFKADLPGMRKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSG 114
R+D +E + ADLPG+ +++V++++G +L I GER+ E ++ + R+ER G
Sbjct: 9 RVDIKEEVNHFVLYADLPGIDPSQIEVQMDKG-ILSIRGERKSESSTETERFSRIERRYG 67
Query: 115 QFLRRFRLPENARIDQVKASTEYGVLTVTVPK 146
F RRF LP++A D + A+ GVL + +PK
Sbjct: 68 SFHRRFALPDSADADGITAAGRNGVLEIRIPK 99
>pdb|3GLA|A Chain A, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
pdb|3GLA|B Chain B, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
Length = 100
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 57/92 (61%), Gaps = 1/92 (1%)
Query: 55 RIDWRETPEAHIFKADLPGMRKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSG 114
R+D +E + ADLPG+ +++V++++G +L I GER+ E ++ + R+ER G
Sbjct: 6 RVDIKEEVNHFVLYADLPGIDPSQIEVQMDKG-ILSIRGERKSESSTETERFSRIERRYG 64
Query: 115 QFLRRFRLPENARIDQVKASTEYGVLTVTVPK 146
F RRF LP++A D + A+ GVL + +PK
Sbjct: 65 SFHRRFALPDSADADGITAAGRNGVLEIRIPK 96
>pdb|4FEI|A Chain A, Hsp17.7 From Deinococcus Radiodurans
Length = 102
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
Query: 57 DWRETPEAHIFKADLPGMRKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQF 116
DWR+ D+PG+ + + E+G L +SGER ++ R ER SG+F
Sbjct: 10 DWRDAGTHLDLLLDVPGVDAGTLALA-EDGGQLTVSGERPG-----TEHLLRSERPSGRF 63
Query: 117 LRRFRLPENARIDQVKASTEYGVLTVTVPKV 147
+R PE R AS GVLTV K+
Sbjct: 64 VRELAFPEPVRPASGVASLAGGVLTVRFEKL 94
>pdb|3L1E|A Chain A, Bovine Alphaa Crystallin Zinc Bound
Length = 106
Score = 30.4 bits (67), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 13/81 (16%)
Query: 70 DLPGMRKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQFLRRFRLPENARID 129
D+ +++ V+++E + + I G+ ER D + R +F RR+RLP N +D
Sbjct: 19 DVKHFSPEDLTVKVQE-DFVEIHGKH----NERQDDHGYISR---EFHRRYRLPSN--VD 68
Query: 130 QVKASTEY---GVLTVTVPKV 147
Q S G+LT + PK+
Sbjct: 69 QSALSCSLSADGMLTFSGPKI 89
>pdb|3L1F|A Chain A, Bovine Alphaa Crystallin
Length = 103
Score = 30.0 bits (66), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 13/81 (16%)
Query: 70 DLPGMRKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQFLRRFRLPENARID 129
D+ +++ V+++E + + I G+ ER D + R +F RR+RLP N +D
Sbjct: 16 DVKHFSPEDLTVKVQE-DFVEIHGKH----NERQDDHGYISR---EFHRRYRLPSN--VD 65
Query: 130 QVKASTEY---GVLTVTVPKV 147
Q S G+LT + PK+
Sbjct: 66 QSALSCSLSADGMLTFSGPKI 86
>pdb|4HZN|A Chain A, The Structure Of The Bifunctional
Acetyltransferase/decarboxylase Lnmk From The Leinamycin
Biosynthetic Pathway Revealing Novel Activity For A
Double Hot Dog Fold
Length = 333
Score = 30.0 bits (66), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 62/145 (42%), Gaps = 27/145 (18%)
Query: 41 RSDLSTETAALANTRIDWRETPEAHIFKA-DLPGMRKDEVKVEIEE---------GNVLR 90
R+D + A + R +RE AH F+A D PG R VE+E G L
Sbjct: 176 RNDGLPQLPAAYSPRAVYREARTAHTFRALDEPGFRLLPDTVEVEHPVDIVRDVNGVGLL 235
Query: 91 ISGERRKEVEERS-DTWHRVERSSGQFLRRFRLPE------NARID-------QVKASTE 136
V++ + W R+ RS FLRR + + NA +D +V+ STE
Sbjct: 236 YFASYFSXVDKAALALWRRLGRSDRAFLRRVVVDQQXCYLGNADLDSVLTLGARVRVSTE 295
Query: 137 Y-GVLTVTVPKVIADRPDVRAIEIS 160
G V V VI+DR R I +S
Sbjct: 296 TPGEELVDV--VISDRDSGRVIAVS 318
>pdb|4HZO|A Chain A, The Structure Of The Bifunctional
Acetyltransferase/decarboxylase Lnmk From The Leinamycin
Biosynthetic Pathway Revealing Novel Activity For A
Double Hot Dog Fold
Length = 318
Score = 29.6 bits (65), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 62/145 (42%), Gaps = 27/145 (18%)
Query: 41 RSDLSTETAALANTRIDWRETPEAHIFKA-DLPGMRKDEVKVEIEE---------GNVLR 90
R+D + A + R +RE AH F+A D PG R VE+E G L
Sbjct: 161 RNDGLPQLPAAYSPRAVYREARTAHTFRALDEPGFRLLPDTVEVEHPVDIVRDVNGVGLL 220
Query: 91 ISGERRKEVEERS-DTWHRVERSSGQFLRRFRLPE------NARID-------QVKASTE 136
V++ + W R+ RS FLRR + + NA +D +V+ STE
Sbjct: 221 YFASYFSMVDKAALALWRRLGRSDRAFLRRVVVDQQMCYLGNADLDSVLTLGARVRVSTE 280
Query: 137 Y-GVLTVTVPKVIADRPDVRAIEIS 160
G V V VI+DR R I +S
Sbjct: 281 TPGEELVDV--VISDRDSGRVIAVS 303
>pdb|4HZP|A Chain A, The Structure Of The Bifunctional
Acetyltransferase/decarboxylase Lnmk From The Leinamycin
Biosynthetic Pathway Revealing Novel Activity For A
Double Hot Dog Fold
Length = 318
Score = 29.6 bits (65), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 62/145 (42%), Gaps = 27/145 (18%)
Query: 41 RSDLSTETAALANTRIDWRETPEAHIFKA-DLPGMRKDEVKVEIEE---------GNVLR 90
R+D + A + R +RE AH F+A D PG R VE+E G L
Sbjct: 161 RNDGLPQLPAAYSPRAVYREARTAHTFRALDEPGFRLLPDTVEVEHPVDIVRDVNGVGLL 220
Query: 91 ISGERRKEVEERS-DTWHRVERSSGQFLRRFRLPE------NARID-------QVKASTE 136
V++ + W R+ RS FLRR + + NA +D +V+ STE
Sbjct: 221 YFASYFSMVDKAALALWRRLGRSDRAFLRRVVVDQQMCYLGNADLDSVLTLGARVRVSTE 280
Query: 137 Y-GVLTVTVPKVIADRPDVRAIEIS 160
G V V VI+DR R I +S
Sbjct: 281 TPGEELVDV--VISDRDSGRVIAVS 303
>pdb|4ELD|A Chain A, Crystal Structure Of An Activated Variant Of Small Heat
Shock Protein Hsp16.5
pdb|4ELD|B Chain B, Crystal Structure Of An Activated Variant Of Small Heat
Shock Protein Hsp16.5
Length = 161
Score = 29.6 bits (65), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 63/152 (41%), Gaps = 16/152 (10%)
Query: 8 FFGRTSNIFDPLSPDIWDPFQDLPFSSLSL---SAPRSDLSTETAALA-NTRIDWRETPE 63
FGR + FD L ++ F P + ++ S P + E+ A+A +I +
Sbjct: 1 MFGR--DPFDSLFERMFKEFFATPMTGTTMIQSSTPLPPAAIESPAVAAGIQISGKGFMP 58
Query: 64 AHIFKAD--------LPGMRKDEVKVEIEEGNVLRISGERRK-EVEERSDTWHRVERSSG 114
I + D LPG+ K+++ + G+ L I +R + E +
Sbjct: 59 ISIIEGDQHIKVIAWLPGVNKEDIILN-AVGDTLEIRAKRSPLMITESERIIYSEIPEEE 117
Query: 115 QFLRRFRLPENARIDQVKASTEYGVLTVTVPK 146
+ R +LP + + A E GVL+V +PK
Sbjct: 118 EIYRTIKLPATVKEENASAKFENGVLSVILPK 149
>pdb|3N3E|A Chain A, Zebrafish Alphaa Crystallin
pdb|3N3E|B Chain B, Zebrafish Alphaa Crystallin
Length = 106
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 13/81 (16%)
Query: 70 DLPGMRKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQFLRRFRLPENARID 129
D+ DE+ V++ + + + I G+ ER D + R +F RR+RLP N +D
Sbjct: 17 DVKHFSPDELSVKVTD-DYVEIQGKH----GERQDDHGYISR---EFHRRYRLPSN--VD 66
Query: 130 QVKASTEY---GVLTVTVPKV 147
Q + G+LT+ PK
Sbjct: 67 QSAITCTLSADGLLTLCGPKT 87
>pdb|1SHS|A Chain A, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|B Chain B, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|C Chain C, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|D Chain D, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|E Chain E, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|F Chain F, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|G Chain G, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|H Chain H, Small Heat Shock Protein From Methanococcus Jannaschii
Length = 147
Score = 26.6 bits (57), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 71 LPGMRKDEVKVEIEEGNVLRISGERRK-EVEERSDTWHRVERSSGQFLRRFRLPENARID 129
LPG+ K+++ + G+ L I +R + E + + R +LP + +
Sbjct: 60 LPGVNKEDIILN-AVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEE 118
Query: 130 QVKASTEYGVLTVTVPK 146
A E GVL+V +PK
Sbjct: 119 NASAKFENGVLSVILPK 135
>pdb|1H9E|A Chain A, Lem-Like Domain Of Human Inner Nuclear Membrane Protein
Lap2
Length = 56
Score = 26.2 bits (56), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 74 MRKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERS 112
+ KD++K E+ NV +GE+RK+V + H R+
Sbjct: 10 LTKDKLKSELVANNVTLPAGEQRKDVYVQLYLQHLTARN 48
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,695,784
Number of Sequences: 62578
Number of extensions: 178051
Number of successful extensions: 441
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 427
Number of HSP's gapped (non-prelim): 21
length of query: 161
length of database: 14,973,337
effective HSP length: 91
effective length of query: 70
effective length of database: 9,278,739
effective search space: 649511730
effective search space used: 649511730
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)