Query 037294
Match_columns 161
No_of_seqs 190 out of 1461
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 10:47:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037294.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037294hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11597 heat shock chaperone 100.0 4.4E-31 9.5E-36 192.9 12.3 104 52-160 31-135 (142)
2 PRK10743 heat shock protein Ib 100.0 1.9E-29 4.2E-34 183.5 13.2 102 54-160 35-137 (137)
3 COG0071 IbpA Molecular chapero 100.0 1.1E-28 2.3E-33 181.6 14.4 109 51-160 38-146 (146)
4 cd06472 ACD_ScHsp26_like Alpha 100.0 6.2E-28 1.3E-32 164.6 11.9 92 55-146 1-92 (92)
5 PF00011 HSP20: Hsp20/alpha cr 99.9 1E-25 2.2E-30 155.8 13.8 101 57-160 1-102 (102)
6 cd06471 ACD_LpsHSP_like Group 99.9 8.3E-26 1.8E-30 154.2 11.5 91 54-146 1-93 (93)
7 cd06470 ACD_IbpA-B_like Alpha- 99.9 4.9E-25 1.1E-29 149.8 12.6 89 54-146 1-90 (90)
8 cd06497 ACD_alphaA-crystallin_ 99.9 7E-24 1.5E-28 143.0 11.0 82 57-146 4-86 (86)
9 cd06478 ACD_HspB4-5-6 Alpha-cr 99.9 3.3E-23 7.1E-28 138.8 10.8 82 57-146 1-83 (83)
10 cd06479 ACD_HspB7_like Alpha c 99.9 1.8E-23 3.9E-28 139.3 9.3 79 57-146 2-81 (81)
11 cd06498 ACD_alphaB-crystallin_ 99.9 5.1E-23 1.1E-27 138.2 10.7 82 58-147 2-84 (84)
12 cd06481 ACD_HspB9_like Alpha c 99.9 2.7E-22 5.9E-27 135.5 10.1 83 60-146 4-87 (87)
13 cd06475 ACD_HspB1_like Alpha c 99.9 3.3E-22 7.2E-27 134.8 10.4 82 56-145 3-85 (86)
14 cd06476 ACD_HspB2_like Alpha c 99.9 4.5E-22 9.8E-27 133.2 10.8 81 58-146 2-83 (83)
15 cd06482 ACD_HspB10 Alpha cryst 99.9 9.7E-22 2.1E-26 132.6 10.4 82 60-146 5-87 (87)
16 cd06464 ACD_sHsps-like Alpha-c 99.9 1.6E-21 3.4E-26 130.4 11.3 88 57-146 1-88 (88)
17 cd06477 ACD_HspB3_Like Alpha c 99.9 3.4E-21 7.3E-26 128.9 10.7 79 59-145 3-82 (83)
18 cd06526 metazoan_ACD Alpha-cry 99.9 3.8E-21 8.2E-26 128.7 9.0 76 63-146 7-83 (83)
19 KOG0710 Molecular chaperone (s 99.8 1.6E-20 3.4E-25 144.3 7.2 115 47-161 78-196 (196)
20 cd06480 ACD_HspB8_like Alpha-c 99.8 5.1E-18 1.1E-22 115.2 9.9 82 57-146 9-91 (91)
21 KOG3591 Alpha crystallins [Pos 99.7 4.7E-17 1E-21 122.6 13.3 100 53-160 62-162 (173)
22 cd00298 ACD_sHsps_p23-like Thi 99.6 1.2E-14 2.7E-19 93.8 9.8 80 58-146 1-80 (80)
23 cd06469 p23_DYX1C1_like p23_li 99.4 3.8E-12 8.3E-17 83.5 8.9 71 58-149 1-71 (78)
24 PF05455 GvpH: GvpH; InterPro 99.1 4.9E-10 1.1E-14 84.1 10.4 80 52-151 90-172 (177)
25 cd06463 p23_like Proteins cont 99.1 1.4E-09 3.1E-14 71.2 9.2 76 58-149 1-76 (84)
26 cd06466 p23_CS_SGT1_like p23_l 98.8 1.9E-08 4E-13 66.6 7.8 77 57-149 1-77 (84)
27 PF04969 CS: CS domain; Inter 98.6 1.4E-06 3E-11 56.4 11.2 77 54-146 1-79 (79)
28 cd06465 p23_hB-ind1_like p23_l 98.3 8.9E-06 1.9E-10 56.6 10.3 78 54-148 1-78 (108)
29 PF08190 PIH1: pre-RNA process 98.3 5.3E-06 1.1E-10 67.9 8.7 65 62-145 260-327 (328)
30 cd06489 p23_CS_hSgt1_like p23_ 98.2 1.6E-05 3.4E-10 52.7 8.7 77 57-149 1-77 (84)
31 cd06488 p23_melusin_like p23_l 98.0 0.00013 2.9E-09 48.8 9.7 79 55-149 2-80 (87)
32 cd06467 p23_NUDC_like p23_like 98.0 9.6E-05 2.1E-09 48.8 8.9 74 57-149 2-77 (85)
33 cd06468 p23_CacyBP p23_like do 97.9 0.00023 4.9E-09 47.8 10.0 79 55-149 3-85 (92)
34 cd06493 p23_NUDCD1_like p23_NU 97.9 0.0002 4.4E-09 47.6 9.4 75 57-150 2-78 (85)
35 cd06494 p23_NUDCD2_like p23-li 97.6 0.00078 1.7E-08 45.8 9.0 78 53-150 5-84 (93)
36 cd00237 p23 p23 binds heat sho 97.5 0.0024 5.2E-08 44.4 10.4 78 54-149 2-79 (106)
37 KOG1309 Suppressor of G2 allel 97.1 0.0022 4.7E-08 48.5 6.9 80 53-148 3-82 (196)
38 PLN03088 SGT1, suppressor of 97.1 0.0038 8.3E-08 52.1 9.1 81 53-149 156-236 (356)
39 cd06492 p23_mNUDC_like p23-lik 96.9 0.013 2.8E-07 39.3 8.6 73 58-149 3-79 (87)
40 cd06490 p23_NCB5OR p23_like do 96.6 0.054 1.2E-06 36.1 10.0 77 56-150 1-81 (87)
41 cd06495 p23_NUDCD3_like p23-li 96.1 0.095 2.1E-06 36.2 9.2 80 53-148 4-86 (102)
42 KOG2265 Nuclear distribution p 92.3 1.3 2.8E-05 33.5 8.0 79 51-148 16-96 (179)
43 PF14913 DPCD: DPCD protein fa 91.2 2.5 5.5E-05 32.4 8.7 79 50-147 83-169 (194)
44 KOG3158 HSP90 co-chaperone p23 88.5 2 4.4E-05 32.4 6.2 80 52-149 6-85 (180)
45 KOG1667 Zn2+-binding protein M 85.7 5 0.00011 32.3 7.3 86 51-151 212-297 (320)
46 PF13349 DUF4097: Domain of un 85.4 12 0.00025 27.0 9.2 83 53-143 65-147 (166)
47 cd06482 ACD_HspB10 Alpha cryst 82.6 3 6.6E-05 27.8 4.3 33 116-149 10-42 (87)
48 cd06470 ACD_IbpA-B_like Alpha- 78.2 7.5 0.00016 25.7 5.1 35 115-150 12-46 (90)
49 PF00011 HSP20: Hsp20/alpha cr 76.6 8.2 0.00018 25.7 5.0 37 63-100 55-92 (102)
50 COG5091 SGT1 Suppressor of G2 75.8 1.9 4.1E-05 35.2 1.9 82 52-148 175-256 (368)
51 cd06476 ACD_HspB2_like Alpha c 75.8 8.4 0.00018 25.3 4.8 33 115-148 8-40 (83)
52 cd06478 ACD_HspB4-5-6 Alpha-cr 75.5 7.8 0.00017 25.3 4.6 32 115-147 8-39 (83)
53 cd06479 ACD_HspB7_like Alpha c 74.7 8.1 0.00017 25.3 4.4 33 115-148 9-41 (81)
54 cd06477 ACD_HspB3_Like Alpha c 74.1 7.9 0.00017 25.5 4.3 32 116-148 9-40 (83)
55 cd06497 ACD_alphaA-crystallin_ 73.5 9.5 0.00021 25.1 4.6 32 115-147 11-42 (86)
56 PRK10743 heat shock protein Ib 72.3 9.7 0.00021 27.5 4.8 32 116-148 47-78 (137)
57 cd06464 ACD_sHsps-like Alpha-c 72.2 7.2 0.00016 24.8 3.8 33 61-94 54-87 (88)
58 cd06471 ACD_LpsHSP_like Group 69.8 7.7 0.00017 25.6 3.6 30 63-93 62-91 (93)
59 PF08308 PEGA: PEGA domain; I 67.9 24 0.00051 21.8 5.4 41 55-95 26-67 (71)
60 cd06472 ACD_ScHsp26_like Alpha 67.5 9.5 0.00021 25.2 3.6 31 62-93 59-90 (92)
61 cd06526 metazoan_ACD Alpha-cry 67.3 13 0.00028 24.0 4.2 34 115-149 8-41 (83)
62 PRK05518 rpl6p 50S ribosomal p 67.0 35 0.00076 25.9 7.0 45 76-145 13-57 (180)
63 TIGR03653 arch_L6P archaeal ri 66.0 42 0.00092 25.2 7.2 45 76-145 7-51 (170)
64 PF12992 DUF3876: Domain of un 65.9 23 0.0005 24.0 5.3 41 51-92 23-68 (95)
65 cd06481 ACD_HspB9_like Alpha c 65.0 18 0.00039 23.8 4.5 32 116-148 9-40 (87)
66 cd06480 ACD_HspB8_like Alpha-c 64.8 15 0.00033 24.6 4.2 30 63-93 58-89 (91)
67 cd06475 ACD_HspB1_like Alpha c 63.6 22 0.00048 23.3 4.8 33 115-148 11-43 (86)
68 COG0071 IbpA Molecular chapero 63.0 23 0.00051 25.5 5.3 35 63-98 100-135 (146)
69 cd06498 ACD_alphaB-crystallin_ 62.1 21 0.00046 23.3 4.5 32 115-147 8-39 (84)
70 TIGR03654 L6_bact ribosomal pr 62.0 46 0.00099 25.0 6.8 44 76-145 11-54 (175)
71 PRK11597 heat shock chaperone 60.4 22 0.00047 25.9 4.6 32 116-148 45-76 (142)
72 PF04972 BON: BON domain; Int 60.1 20 0.00043 21.6 3.9 26 72-98 12-37 (64)
73 PRK05498 rplF 50S ribosomal pr 59.6 49 0.0011 24.9 6.6 44 76-145 12-55 (178)
74 cd06469 p23_DYX1C1_like p23_li 57.6 36 0.00078 21.2 4.9 33 63-96 36-69 (78)
75 PTZ00027 60S ribosomal protein 56.4 57 0.0012 25.0 6.5 47 76-145 13-59 (190)
76 PF01954 DUF104: Protein of un 54.9 11 0.00024 23.3 2.0 19 129-147 3-21 (60)
77 cd06467 p23_NUDC_like p23_like 54.9 29 0.00063 22.1 4.2 30 116-145 10-39 (85)
78 PRK10568 periplasmic protein; 54.3 28 0.00061 26.7 4.6 25 72-97 73-97 (203)
79 CHL00140 rpl6 ribosomal protei 48.9 72 0.0016 24.0 6.0 44 76-145 12-55 (178)
80 PTZ00179 60S ribosomal protein 47.0 84 0.0018 24.0 6.1 47 76-145 12-58 (189)
81 KOG3591 Alpha crystallins [Pos 45.4 59 0.0013 24.5 5.0 32 68-99 120-152 (173)
82 cd06494 p23_NUDCD2_like p23-li 44.9 93 0.002 20.8 5.9 31 114-144 15-45 (93)
83 cd00503 Frataxin Frataxin is a 44.2 25 0.00055 24.2 2.7 17 129-145 28-44 (105)
84 PF00347 Ribosomal_L6: Ribosom 44.2 67 0.0015 20.0 4.6 46 76-145 2-47 (77)
85 KOG3413 Mitochondrial matrix p 42.9 12 0.00026 27.5 0.9 24 122-145 65-88 (156)
86 PF14814 UB2H: Bifunctional tr 42.7 79 0.0017 20.6 4.8 42 102-143 29-72 (85)
87 PRK14290 chaperone protein Dna 42.2 1.7E+02 0.0037 24.5 7.8 29 119-147 277-305 (365)
88 PF01491 Frataxin_Cyay: Fratax 41.6 34 0.00073 23.6 3.0 18 129-146 30-47 (109)
89 PRK00446 cyaY frataxin-like pr 41.0 27 0.00059 24.1 2.4 18 130-147 28-45 (105)
90 TIGR03421 FeS_CyaY iron donor 40.4 27 0.00058 24.0 2.3 17 130-146 26-42 (102)
91 cd06493 p23_NUDCD1_like p23_NU 37.8 76 0.0017 20.4 4.2 30 116-145 10-39 (85)
92 KOG3260 Calcyclin-binding prot 36.8 1.7E+02 0.0036 22.6 6.2 78 56-149 77-155 (224)
93 PRK11198 LysM domain/BON super 36.8 47 0.001 24.1 3.3 26 72-98 38-63 (147)
94 PF05455 GvpH: GvpH; InterPro 35.4 1.7E+02 0.0036 22.3 6.0 39 61-100 134-172 (177)
95 PF03983 SHD1: SLA1 homology d 33.4 50 0.0011 21.2 2.6 37 56-92 13-49 (70)
96 cd02178 GH16_beta_agarase Beta 32.4 2E+02 0.0044 22.6 6.5 44 81-125 60-110 (258)
97 TIGR03422 mito_frataxin fratax 32.4 35 0.00077 23.2 1.9 15 132-146 30-44 (97)
98 PF07873 YabP: YabP family; I 32.3 41 0.00089 20.9 2.0 23 73-96 22-44 (66)
99 KOG3247 Uncharacterized conser 31.7 26 0.00057 30.2 1.3 77 52-149 2-81 (466)
100 PF13620 CarboxypepD_reg: Carb 30.2 60 0.0013 20.2 2.7 29 63-91 48-77 (82)
101 cd08023 GH16_laminarinase_like 30.1 2.5E+02 0.0054 21.4 6.9 50 73-125 34-91 (235)
102 cd02175 GH16_lichenase lichena 29.6 1.9E+02 0.004 22.0 5.7 48 75-125 30-80 (212)
103 PRK14299 chaperone protein Dna 29.2 3.1E+02 0.0066 22.2 7.2 29 119-147 206-236 (291)
104 COG0097 RplF Ribosomal protein 28.3 2.5E+02 0.0054 21.4 6.0 20 75-95 11-30 (178)
105 TIGR02856 spore_yqfC sporulati 27.5 48 0.001 21.9 1.8 42 53-96 19-62 (85)
106 COG4004 Uncharacterized protei 27.2 1.7E+02 0.0037 19.8 4.3 34 56-94 26-59 (96)
107 PF08845 SymE_toxin: Toxin Sym 27.0 91 0.002 19.0 2.9 23 69-92 33-56 (57)
108 PF02736 Myosin_N: Myosin N-te 26.5 84 0.0018 17.6 2.5 24 69-92 16-39 (42)
109 TIGR02892 spore_yabP sporulati 26.3 53 0.0012 21.8 1.9 24 71-95 19-42 (85)
110 PF06964 Alpha-L-AF_C: Alpha-L 25.9 1.3E+02 0.0029 22.0 4.2 27 121-147 150-176 (177)
111 PF13014 KH_3: KH domain 25.7 92 0.002 17.2 2.6 21 141-161 23-43 (43)
112 PF01556 CTDII: DnaJ C termina 25.5 76 0.0016 20.3 2.5 52 69-128 19-76 (81)
113 PF12624 Chorein_N: N-terminal 25.3 62 0.0013 22.4 2.2 22 72-94 18-39 (118)
114 PF06977 SdiA-regulated: SdiA- 25.2 3.5E+02 0.0076 21.5 8.3 66 69-143 15-81 (248)
115 cd00098 IgC Immunoglobulin Con 24.2 1.9E+02 0.0042 18.2 4.8 72 60-140 11-86 (95)
116 cd02182 GH16_Strep_laminarinas 23.8 1.7E+02 0.0036 23.1 4.6 19 76-97 45-64 (259)
117 COG1965 CyaY Protein implicate 23.4 82 0.0018 21.9 2.4 17 131-147 30-46 (106)
118 cd07698 IgC_MHC_I_alpha3 Class 22.6 2.2E+02 0.0049 18.3 6.4 25 62-86 14-38 (93)
119 cd02177 GH16_kappa_carrageenas 22.4 4.2E+02 0.009 21.3 6.8 44 80-124 45-103 (269)
120 PF03368 Dicer_dimer: Dicer di 21.7 1.4E+02 0.0031 19.6 3.3 25 51-75 19-43 (90)
121 PRK14284 chaperone protein Dna 21.6 5E+02 0.011 21.9 9.3 30 119-148 285-316 (391)
122 PF07654 C1-set: Immunoglobuli 20.4 2.3E+02 0.005 17.7 4.7 24 62-85 8-31 (83)
123 PF14913 DPCD: DPCD protein fa 20.4 1.3E+02 0.0029 23.1 3.2 43 55-98 122-171 (194)
124 PRK01379 cyaY frataxin-like pr 20.3 96 0.0021 21.3 2.2 16 130-145 29-44 (103)
125 cd00413 Glyco_hydrolase_16 gly 20.1 3.6E+02 0.0078 19.9 5.7 49 75-125 28-79 (210)
No 1
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.97 E-value=4.4e-31 Score=192.87 Aligned_cols=104 Identities=18% Similarity=0.308 Sum_probs=92.8
Q ss_pred cCceeeEEE-CCCeEEEEEEcCCCcCCCeEEEEecCceEEEEeEEecccccCCceEEEEeeeeeEEEEEEECCCCCccCC
Q 037294 52 ANTRIDWRE-TPEAHIFKADLPGMRKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQFLRRFRLPENARIDQ 130 (161)
Q Consensus 52 ~~p~~dv~e-~~~~~~i~~~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~ 130 (161)
..|++||.| ++++|+|.++|||++++||+|.+++ +.|+|+|+++.+ .++.+|+++|+.+|+|+|+|.||.+||.+
T Consensus 31 ~~P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~~-~~LtI~ge~~~~--~~~~~~~~~Er~~g~F~R~f~LP~~vd~~- 106 (142)
T PRK11597 31 SFPPYNIEKSDDNHYRITLALAGFRQEDLDIQLEG-TRLTVKGTPEQP--EKEVKWLHQGLVNQPFSLSFTLAENMEVS- 106 (142)
T ss_pred CCCcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEEC-CEEEEEEEEccc--cCCCcEEEEEEeCcEEEEEEECCCCcccC-
Confidence 358999998 5779999999999999999999996 599999998643 35678999999999999999999999998
Q ss_pred eEEEEeCCEEEEEEeCcCCCCCCeeEEecc
Q 037294 131 VKASTEYGVLTVTVPKVIADRPDVRAIEIS 160 (161)
Q Consensus 131 i~A~~~~GvL~I~~pK~~~~~~~~~~I~I~ 160 (161)
+|+|+||||+|++||..++..++++|+|+
T Consensus 107 -~A~~~nGVL~I~lPK~~~~~~~~rkI~I~ 135 (142)
T PRK11597 107 -GATFVNGLLHIDLIRNEPEAIAPQRIAIS 135 (142)
T ss_pred -cCEEcCCEEEEEEeccCccccCCcEEEEC
Confidence 79999999999999986666677899986
No 2
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.96 E-value=1.9e-29 Score=183.50 Aligned_cols=102 Identities=22% Similarity=0.363 Sum_probs=91.9
Q ss_pred ceeeEEE-CCCeEEEEEEcCCCcCCCeEEEEecCceEEEEeEEecccccCCceEEEEeeeeeEEEEEEECCCCCccCCeE
Q 037294 54 TRIDWRE-TPEAHIFKADLPGMRKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQFLRRFRLPENARIDQVK 132 (161)
Q Consensus 54 p~~dv~e-~~~~~~i~~~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~ 132 (161)
|++||.+ ++++|+|.++|||++++||+|++++ +.|+|+|+++.+. ++.+|+++|+++|+|+|+|.||++||.+ +
T Consensus 35 p~~di~ee~~~~~~v~aelPGv~kedi~V~v~~-~~LtI~ge~~~~~--~~~~~~~~Er~~g~F~R~~~LP~~Vd~~--~ 109 (137)
T PRK10743 35 PPYNVELVDENHYRIAIAVAGFAESELEITAQD-NLLVVKGAHADEQ--KERTYLYQGIAERNFERKFQLAENIHVR--G 109 (137)
T ss_pred CcEEEEEcCCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEECccc--cCCcEEEEEEECCEEEEEEECCCCcccC--c
Confidence 8899994 8999999999999999999999997 5999999986543 4577999999999999999999999998 5
Q ss_pred EEEeCCEEEEEEeCcCCCCCCeeEEecc
Q 037294 133 ASTEYGVLTVTVPKVIADRPDVRAIEIS 160 (161)
Q Consensus 133 A~~~~GvL~I~~pK~~~~~~~~~~I~I~ 160 (161)
|+|+||||+|++||..++..++++|+|+
T Consensus 110 A~~~dGVL~I~lPK~~~~~~~~r~I~I~ 137 (137)
T PRK10743 110 ANLVNGLLYIDLERVIPEAKKPRRIEIN 137 (137)
T ss_pred CEEeCCEEEEEEeCCCccccCCeEEeeC
Confidence 9999999999999986666677899985
No 3
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.1e-28 Score=181.63 Aligned_cols=109 Identities=38% Similarity=0.623 Sum_probs=101.3
Q ss_pred ccCceeeEEECCCeEEEEEEcCCCcCCCeEEEEecCceEEEEeEEecccccCCceEEEEeeeeeEEEEEEECCCCCccCC
Q 037294 51 LANTRIDWRETPEAHIFKADLPGMRKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQFLRRFRLPENARIDQ 130 (161)
Q Consensus 51 ~~~p~~dv~e~~~~~~i~~~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~ 130 (161)
...|++||++++++|+|.++|||++++||+|++++ +.|+|+|++..+...++..++++|+.+|+|+|+|.||..|+.+.
T Consensus 38 ~~~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~~-~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~ 116 (146)
T COG0071 38 TGTPPVDIEETDDEYRITAELPGVDKEDIEITVEG-NTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEV 116 (146)
T ss_pred CCCCcEEEEEcCCEEEEEEEcCCCChHHeEEEEEC-CEEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccccccc
Confidence 35799999999999999999999999999999997 59999999988666777899999999999999999999999999
Q ss_pred eEEEEeCCEEEEEEeCcCCCCCCeeEEecc
Q 037294 131 VKASTEYGVLTVTVPKVIADRPDVRAIEIS 160 (161)
Q Consensus 131 i~A~~~~GvL~I~~pK~~~~~~~~~~I~I~ 160 (161)
++|+|+||+|+|++||..+++.+.++|+|+
T Consensus 117 ~~A~~~nGvL~I~lpk~~~~~~~~~~i~I~ 146 (146)
T COG0071 117 IKAKYKNGLLTVTLPKAEPEEKKPKRIEIE 146 (146)
T ss_pred eeeEeeCcEEEEEEeccccccccCceeecC
Confidence 999999999999999999887677888874
No 4
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.95 E-value=6.2e-28 Score=164.56 Aligned_cols=92 Identities=73% Similarity=1.220 Sum_probs=85.9
Q ss_pred eeeEEECCCeEEEEEEcCCCcCCCeEEEEecCceEEEEeEEecccccCCceEEEEeeeeeEEEEEEECCCCCccCCeEEE
Q 037294 55 RIDWRETPEAHIFKADLPGMRKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQFLRRFRLPENARIDQVKAS 134 (161)
Q Consensus 55 ~~dv~e~~~~~~i~~~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~ 134 (161)
++||+|++++|+|.++|||++++||+|++.+++.|+|+|++..+...++.++++.|+.+|+|.|+|.||.+|+.++|+|+
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A~ 80 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAF 80 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEEE
Confidence 47999999999999999999999999999864589999999776666678899999999999999999999999999999
Q ss_pred EeCCEEEEEEeC
Q 037294 135 TEYGVLTVTVPK 146 (161)
Q Consensus 135 ~~~GvL~I~~pK 146 (161)
|+||+|+|++||
T Consensus 81 ~~nGvL~I~lPK 92 (92)
T cd06472 81 LENGVLTVTVPK 92 (92)
T ss_pred EECCEEEEEecC
Confidence 999999999998
No 5
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.94 E-value=1e-25 Score=155.82 Aligned_cols=101 Identities=43% Similarity=0.704 Sum_probs=84.3
Q ss_pred eEEECCCeEEEEEEcCCCcCCCeEEEEecCceEEEEeEEecccccCCceEEEEeeeeeEEEEEEECCCCCccCCeEEEEe
Q 037294 57 DWRETPEAHIFKADLPGMRKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQFLRRFRLPENARIDQVKASTE 136 (161)
Q Consensus 57 dv~e~~~~~~i~~~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~ 136 (161)
||.+++++|.|.++|||+.+++|+|++++ +.|+|+|++. ....+..++..|+.+++|.|+|.||.++|.++|+|+|+
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~~~-~~L~I~g~~~--~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~~ 77 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDD-NKLVISGKRK--EEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASYE 77 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEEET-TEEEEEEEEE--GEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEET
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEEec-Cccceeceee--eeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEec
Confidence 79999999999999999999999999997 5999999998 34455778888999999999999999999999999999
Q ss_pred CCEEEEEEeCcCCCCC-CeeEEecc
Q 037294 137 YGVLTVTVPKVIADRP-DVRAIEIS 160 (161)
Q Consensus 137 ~GvL~I~~pK~~~~~~-~~~~I~I~ 160 (161)
||+|+|++||...... .+++|+|+
T Consensus 78 ~GvL~I~~pk~~~~~~~~~~~I~I~ 102 (102)
T PF00011_consen 78 NGVLTITIPKKEEEEDSQPKRIPIK 102 (102)
T ss_dssp TSEEEEEEEBSSSCTTSSSCEE-ET
T ss_pred CCEEEEEEEccccccCCCCeEEEeC
Confidence 9999999999987654 67999985
No 6
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.94 E-value=8.3e-26 Score=154.16 Aligned_cols=91 Identities=37% Similarity=0.671 Sum_probs=82.7
Q ss_pred ceeeEEECCCeEEEEEEcCCCcCCCeEEEEecCceEEEEeEEecccc--cCCceEEEEeeeeeEEEEEEECCCCCccCCe
Q 037294 54 TRIDWRETPEAHIFKADLPGMRKDEVKVEIEEGNVLRISGERRKEVE--ERSDTWHRVERSSGQFLRRFRLPENARIDQV 131 (161)
Q Consensus 54 p~~dv~e~~~~~~i~~~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~--~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i 131 (161)
+++||.|++++|+|.++|||++++||+|++.+ +.|+|+|++....+ ....+++++|+.+|+|.|+|.|| +++.+.|
T Consensus 1 ~~~di~e~~~~~~i~~~lPGv~~edi~v~~~~-~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~i 78 (93)
T cd06471 1 MKTDIKETDDEYIVEADLPGFKKEDIKLDYKD-GYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEEI 78 (93)
T ss_pred CceeEEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHHHC
Confidence 36899999999999999999999999999996 59999999976432 23457999999999999999999 7999999
Q ss_pred EEEEeCCEEEEEEeC
Q 037294 132 KASTEYGVLTVTVPK 146 (161)
Q Consensus 132 ~A~~~~GvL~I~~pK 146 (161)
+|+|+||+|+|++||
T Consensus 79 ~A~~~dGvL~I~lPK 93 (93)
T cd06471 79 KAKYENGVLKITLPK 93 (93)
T ss_pred EEEEECCEEEEEEcC
Confidence 999999999999998
No 7
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.93 E-value=4.9e-25 Score=149.76 Aligned_cols=89 Identities=20% Similarity=0.411 Sum_probs=81.7
Q ss_pred ceeeEEECC-CeEEEEEEcCCCcCCCeEEEEecCceEEEEeEEecccccCCceEEEEeeeeeEEEEEEECCCCCccCCeE
Q 037294 54 TRIDWRETP-EAHIFKADLPGMRKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQFLRRFRLPENARIDQVK 132 (161)
Q Consensus 54 p~~dv~e~~-~~~~i~~~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~ 132 (161)
|++||.|++ ++|+|.++|||+++++|+|++.+ +.|+|+|++..... ++.+|+++|+.+|+|.|+|.||.+++.. +
T Consensus 1 p~~di~e~~~~~~~v~~~lPG~~kedi~v~~~~-~~L~I~g~~~~~~~-~~~~~~~~e~~~g~f~R~~~LP~~vd~~--~ 76 (90)
T cd06470 1 PPYNIEKTGENNYRITLAVAGFSEDDLEIEVEN-NQLTVTGKKADEEN-EEREYLHRGIAKRAFERSFNLADHVKVK--G 76 (90)
T ss_pred CCeeeEEcCCCeEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEccccc-CCCcEEEEEEeceEEEEEEECCCCceEC--e
Confidence 679999975 89999999999999999999996 59999999987655 6678999999999999999999999975 9
Q ss_pred EEEeCCEEEEEEeC
Q 037294 133 ASTEYGVLTVTVPK 146 (161)
Q Consensus 133 A~~~~GvL~I~~pK 146 (161)
|+|+||+|+|+||+
T Consensus 77 A~~~~GvL~I~l~~ 90 (90)
T cd06470 77 AELENGLLTIDLER 90 (90)
T ss_pred eEEeCCEEEEEEEC
Confidence 99999999999985
No 8
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.91 E-value=7e-24 Score=142.96 Aligned_cols=82 Identities=23% Similarity=0.430 Sum_probs=73.3
Q ss_pred eEEECCCeEEEEEEcCCCcCCCeEEEEecCceEEEEeEEecccccCCceEEEEeeeeeEEEEEEECCCCCccCCeEEEE-
Q 037294 57 DWRETPEAHIFKADLPGMRKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQFLRRFRLPENARIDQVKAST- 135 (161)
Q Consensus 57 dv~e~~~~~~i~~~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~- 135 (161)
+|.+++++|.|.++|||++++||+|++.+ +.|+|+|++.... ++..|+++| |+|+|.||.+||.++|+|+|
T Consensus 4 ~v~e~~~~~~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~~~~--~~~~~~~~e-----f~R~~~LP~~Vd~~~i~A~~~ 75 (86)
T cd06497 4 EVRSDRDKFTIYLDVKHFSPEDLTVKVLD-DYVEIHGKHSERQ--DDHGYISRE-----FHRRYRLPSNVDQSAITCSLS 75 (86)
T ss_pred eEEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEccee--CCCCEEEEE-----EEEEEECCCCCChHHeEEEeC
Confidence 79999999999999999999999999997 5999999975432 334566654 99999999999999999999
Q ss_pred eCCEEEEEEeC
Q 037294 136 EYGVLTVTVPK 146 (161)
Q Consensus 136 ~~GvL~I~~pK 146 (161)
+||+|+|++||
T Consensus 76 ~dGvL~I~~PK 86 (86)
T cd06497 76 ADGMLTFSGPK 86 (86)
T ss_pred CCCEEEEEecC
Confidence 89999999998
No 9
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.90 E-value=3.3e-23 Score=138.83 Aligned_cols=82 Identities=23% Similarity=0.412 Sum_probs=72.0
Q ss_pred eEEECCCeEEEEEEcCCCcCCCeEEEEecCceEEEEeEEecccccCCceEEEEeeeeeEEEEEEECCCCCccCCeEEEE-
Q 037294 57 DWRETPEAHIFKADLPGMRKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQFLRRFRLPENARIDQVKAST- 135 (161)
Q Consensus 57 dv~e~~~~~~i~~~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~- 135 (161)
+|.+++++|+|.++||||+++||+|++.+ +.|+|+|++.... ++..++++| |.|+|.||.+||.++|+|+|
T Consensus 1 ~~~~~~~~~~v~~dlpG~~~edI~V~v~~-~~L~I~g~~~~~~--~~~~~~~~e-----f~R~~~LP~~vd~~~i~A~~~ 72 (83)
T cd06478 1 EVRLDKDRFSVNLDVKHFSPEELSVKVLG-DFVEIHGKHEERQ--DEHGFISRE-----FHRRYRLPPGVDPAAITSSLS 72 (83)
T ss_pred CeeecCceEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEceEc--CCCCEEEEE-----EEEEEECCCCcChHHeEEEEC
Confidence 47899999999999999999999999997 5999999975432 234566554 99999999999999999999
Q ss_pred eCCEEEEEEeC
Q 037294 136 EYGVLTVTVPK 146 (161)
Q Consensus 136 ~~GvL~I~~pK 146 (161)
+||+|+|++||
T Consensus 73 ~dGvL~I~~PK 83 (83)
T cd06478 73 ADGVLTISGPR 83 (83)
T ss_pred CCCEEEEEecC
Confidence 79999999998
No 10
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.90 E-value=1.8e-23 Score=139.33 Aligned_cols=79 Identities=19% Similarity=0.335 Sum_probs=71.5
Q ss_pred eEEECCCeEEEEEEcCCCcCCCeEEEEecCceEEEEeEEecccccCCceEEEEeeeeeEEEEEEECCCCCccCCeEEEE-
Q 037294 57 DWRETPEAHIFKADLPGMRKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQFLRRFRLPENARIDQVKAST- 135 (161)
Q Consensus 57 dv~e~~~~~~i~~~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~- 135 (161)
||.|++++|+|.++|||++|+||+|++.+ +.|+|+|+++.+. +..+|+|+|+|.||.+||.++|+|+|
T Consensus 2 ~v~e~~~~~~v~~dlpG~~pedi~V~v~~-~~L~I~ger~~~~----------~~~~g~F~R~~~LP~~vd~e~v~A~l~ 70 (81)
T cd06479 2 NVKTLGDTYQFAVDVSDFSPEDIIVTTSN-NQIEVHAEKLASD----------GTVMNTFTHKCQLPEDVDPTSVSSSLG 70 (81)
T ss_pred CccCcCCeEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEeccC----------CCEEEEEEEEEECCCCcCHHHeEEEec
Confidence 68999999999999999999999999997 5999999986432 12588999999999999999999998
Q ss_pred eCCEEEEEEeC
Q 037294 136 EYGVLTVTVPK 146 (161)
Q Consensus 136 ~~GvL~I~~pK 146 (161)
+||+|+|++++
T Consensus 71 ~~GvL~I~~~~ 81 (81)
T cd06479 71 EDGTLTIKARR 81 (81)
T ss_pred CCCEEEEEecC
Confidence 99999999985
No 11
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.90 E-value=5.1e-23 Score=138.18 Aligned_cols=82 Identities=22% Similarity=0.387 Sum_probs=71.6
Q ss_pred EEECCCeEEEEEEcCCCcCCCeEEEEecCceEEEEeEEecccccCCceEEEEeeeeeEEEEEEECCCCCccCCeEEEEe-
Q 037294 58 WRETPEAHIFKADLPGMRKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQFLRRFRLPENARIDQVKASTE- 136 (161)
Q Consensus 58 v~e~~~~~~i~~~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~- 136 (161)
+.+++++|.|.++||||+++||+|++.+ +.|+|+|++..+. ++..++++ .|+|+|.||.+||.++|+|+|+
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~~~~--~~~~~~~~-----eF~R~~~LP~~vd~~~i~A~~~~ 73 (84)
T cd06498 2 MRLEKDKFSVNLDVKHFSPEELKVKVLG-DFIEIHGKHEERQ--DEHGFISR-----EFQRKYRIPADVDPLTITSSLSP 73 (84)
T ss_pred eEeCCceEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEccee--CCCCEEEE-----EEEEEEECCCCCChHHcEEEeCC
Confidence 6788999999999999999999999997 5999999876443 23455544 4999999999999999999995
Q ss_pred CCEEEEEEeCc
Q 037294 137 YGVLTVTVPKV 147 (161)
Q Consensus 137 ~GvL~I~~pK~ 147 (161)
||+|+|++||+
T Consensus 74 dGvL~I~lPk~ 84 (84)
T cd06498 74 DGVLTVCGPRK 84 (84)
T ss_pred CCEEEEEEeCC
Confidence 99999999985
No 12
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.88 E-value=2.7e-22 Score=135.47 Aligned_cols=83 Identities=24% Similarity=0.478 Sum_probs=72.5
Q ss_pred ECCCeEEEEEEcCCCcCCCeEEEEecCceEEEEeEEecccccCCceEEEEeeeeeEEEEEEECCCCCccCCeEEEE-eCC
Q 037294 60 ETPEAHIFKADLPGMRKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQFLRRFRLPENARIDQVKAST-EYG 138 (161)
Q Consensus 60 e~~~~~~i~~~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~-~~G 138 (161)
+..++|.|.++||||+++||+|++.+ +.|+|+|++..+...+...+. +.+|+|.|+|.||.+||.+.|+|+| +||
T Consensus 4 ~~~d~~~v~~dlpG~~~edI~V~v~~-~~L~I~g~~~~~~~~~~~~~~---~~~~~F~R~~~LP~~Vd~~~i~A~~~~dG 79 (87)
T cd06481 4 DGKEGFSLKLDVRGFSPEDLSVRVDG-RKLVVTGKREKKNEDEKGSFS---YEYQEFVREAQLPEHVDPEAVTCSLSPSG 79 (87)
T ss_pred CccceEEEEEECCCCChHHeEEEEEC-CEEEEEEEEeeecccCCCcEE---EEeeEEEEEEECCCCcChHHeEEEeCCCc
Confidence 45689999999999999999999996 699999998765544444554 3589999999999999999999999 999
Q ss_pred EEEEEEeC
Q 037294 139 VLTVTVPK 146 (161)
Q Consensus 139 vL~I~~pK 146 (161)
+|+|++|+
T Consensus 80 vL~I~~P~ 87 (87)
T cd06481 80 HLHIRAPR 87 (87)
T ss_pred eEEEEcCC
Confidence 99999995
No 13
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.88 E-value=3.3e-22 Score=134.79 Aligned_cols=82 Identities=24% Similarity=0.431 Sum_probs=71.6
Q ss_pred eeEEECCCeEEEEEEcCCCcCCCeEEEEecCceEEEEeEEecccccCCceEEEEeeeeeEEEEEEECCCCCccCCeEEEE
Q 037294 56 IDWRETPEAHIFKADLPGMRKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQFLRRFRLPENARIDQVKAST 135 (161)
Q Consensus 56 ~dv~e~~~~~~i~~~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~ 135 (161)
.+|+|++++|.|.++|||+++++|+|++.+ +.|+|+|++..... ...+. .++|+|+|.||.+||.++|+|+|
T Consensus 3 ~~i~e~~~~~~v~~dlPG~~~edi~V~v~~-~~L~I~g~~~~~~~--~~~~~-----~~~f~R~f~LP~~vd~~~v~A~~ 74 (86)
T cd06475 3 SEIRQTADRWKVSLDVNHFAPEELVVKTKD-GVVEITGKHEEKQD--EHGFV-----SRCFTRKYTLPPGVDPTAVTSSL 74 (86)
T ss_pred ceEEEcCCeEEEEEECCCCCHHHEEEEEEC-CEEEEEEEECcCcC--CCCEE-----EEEEEEEEECCCCCCHHHcEEEE
Confidence 589999999999999999999999999997 59999999864322 22232 34799999999999999999999
Q ss_pred e-CCEEEEEEe
Q 037294 136 E-YGVLTVTVP 145 (161)
Q Consensus 136 ~-~GvL~I~~p 145 (161)
+ ||+|+|++|
T Consensus 75 ~~dGvL~I~lP 85 (86)
T cd06475 75 SPDGILTVEAP 85 (86)
T ss_pred CCCCeEEEEec
Confidence 6 999999998
No 14
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.88 E-value=4.5e-22 Score=133.25 Aligned_cols=81 Identities=21% Similarity=0.328 Sum_probs=69.2
Q ss_pred EEECCCeEEEEEEcCCCcCCCeEEEEecCceEEEEeEEecccccCCceEEEEeeeeeEEEEEEECCCCCccCCeEEEEe-
Q 037294 58 WRETPEAHIFKADLPGMRKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQFLRRFRLPENARIDQVKASTE- 136 (161)
Q Consensus 58 v~e~~~~~~i~~~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~- 136 (161)
+..++++|.|.++||||+++||+|++.+ +.|+|+|++.... +...+++ +.|+|+|.||.+||.++|+|+|+
T Consensus 2 ~~~~~d~y~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~~~~--~~~~~~~-----~eF~R~~~LP~~vd~~~v~A~~~~ 73 (83)
T cd06476 2 VESEDDKYQVFLDVCHFTPDEITVRTVD-NLLEVSARHPQRM--DRHGFVS-----REFTRTYILPMDVDPLLVRASLSH 73 (83)
T ss_pred eeccCCeEEEEEEcCCCCHHHeEEEEEC-CEEEEEEEEccee--cCCCEEE-----EEEEEEEECCCCCChhhEEEEecC
Confidence 4557889999999999999999999997 5999999985432 2233444 45999999999999999999995
Q ss_pred CCEEEEEEeC
Q 037294 137 YGVLTVTVPK 146 (161)
Q Consensus 137 ~GvL~I~~pK 146 (161)
||+|+|++||
T Consensus 74 dGvL~I~~Pr 83 (83)
T cd06476 74 DGILCIQAPR 83 (83)
T ss_pred CCEEEEEecC
Confidence 9999999997
No 15
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=99.87 E-value=9.7e-22 Score=132.57 Aligned_cols=82 Identities=22% Similarity=0.332 Sum_probs=71.1
Q ss_pred ECCCeEEEEEEcCCCcCCCeEEEEecCceEEEEeEEecccccCCceEEEEeeeeeEEEEEEECCCCCccCCeEEEEeCC-
Q 037294 60 ETPEAHIFKADLPGMRKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQFLRRFRLPENARIDQVKASTEYG- 138 (161)
Q Consensus 60 e~~~~~~i~~~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~~G- 138 (161)
.++++|+|.++|||++++||+|++.+ +.|+|+|+++...+... ..|+.+|+|.|+|.||.+||.++|+|+|+||
T Consensus 5 ~~~~~~~v~adlPG~~kedI~V~v~~-~~L~I~ger~~~~e~~~----~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~ 79 (87)
T cd06482 5 CDSSNVLASVDVCGFEPDQVKVKVKD-GKVQVSAERENRYDCLG----SKKYSYMNICKEFSLPPGVDEKDVTYSYGLGS 79 (87)
T ss_pred ccCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEecccccCC----ccEEEEEEEEEEEECCCCcChHHcEEEEcCCC
Confidence 36789999999999999999999997 59999999976543222 2478999999999999999999999999777
Q ss_pred EEEEEEeC
Q 037294 139 VLTVTVPK 146 (161)
Q Consensus 139 vL~I~~pK 146 (161)
+|+|.-|.
T Consensus 80 ~l~i~~~~ 87 (87)
T cd06482 80 VVKIETPC 87 (87)
T ss_pred EEEEeeCC
Confidence 99999874
No 16
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.87 E-value=1.6e-21 Score=130.41 Aligned_cols=88 Identities=55% Similarity=0.844 Sum_probs=80.7
Q ss_pred eEEECCCeEEEEEEcCCCcCCCeEEEEecCceEEEEeEEecccccCCceEEEEeeeeeEEEEEEECCCCCccCCeEEEEe
Q 037294 57 DWRETPEAHIFKADLPGMRKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQFLRRFRLPENARIDQVKASTE 136 (161)
Q Consensus 57 dv~e~~~~~~i~~~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~ 136 (161)
++.|++++|+|.++|||+++++|+|++.+ +.|.|+|++........ .+...++.++.|.|+|.||..+|.+.++|.|+
T Consensus 1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v~~-~~l~I~g~~~~~~~~~~-~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~~ 78 (88)
T cd06464 1 DVYETDDAYVVEADLPGFKKEDIKVEVED-GVLTISGEREEEEEEEE-NYLRRERSYGSFSRSFRLPEDVDPDKIKASLE 78 (88)
T ss_pred CcEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEecccccCC-cEEEEEEeCcEEEEEEECCCCcCHHHcEEEEe
Confidence 47889999999999999999999999997 69999999987654433 78888999999999999999999999999999
Q ss_pred CCEEEEEEeC
Q 037294 137 YGVLTVTVPK 146 (161)
Q Consensus 137 ~GvL~I~~pK 146 (161)
||+|+|++||
T Consensus 79 ~G~L~I~~pk 88 (88)
T cd06464 79 NGVLTITLPK 88 (88)
T ss_pred CCEEEEEEcC
Confidence 9999999997
No 17
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=99.86 E-value=3.4e-21 Score=128.89 Aligned_cols=79 Identities=20% Similarity=0.363 Sum_probs=68.1
Q ss_pred EECCCeEEEEEEcCCCcCCCeEEEEecCceEEEEeEEecccccCCceEEEEeeeeeEEEEEEECCCCCccCCeEEEE-eC
Q 037294 59 RETPEAHIFKADLPGMRKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQFLRRFRLPENARIDQVKAST-EY 137 (161)
Q Consensus 59 ~e~~~~~~i~~~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~-~~ 137 (161)
.|++++|+|.++|||++++||+|++.+ +.|+|+|++..+.+ ...++ .++|+|+|.||.+|+.++|+|+| +|
T Consensus 3 ~e~~~~~~v~~dlpG~~~edI~V~v~~-~~L~I~ge~~~~~~--~~~~~-----~r~F~R~~~LP~~Vd~~~v~A~~~~d 74 (83)
T cd06477 3 EEGKPMFQILLDVVQFRPEDIIIQVFE-GWLLIKGQHGVRMD--EHGFI-----SRSFTRQYQLPDGVEHKDLSAMLCHD 74 (83)
T ss_pred ccCCceEEEEEEcCCCCHHHeEEEEEC-CEEEEEEEEccccC--CCCEE-----EEEEEEEEECCCCcchheEEEEEcCC
Confidence 467899999999999999999999997 59999999876432 23333 33899999999999999999998 89
Q ss_pred CEEEEEEe
Q 037294 138 GVLTVTVP 145 (161)
Q Consensus 138 GvL~I~~p 145 (161)
|+|+|+.|
T Consensus 75 GvL~I~~~ 82 (83)
T cd06477 75 GILVVETK 82 (83)
T ss_pred CEEEEEec
Confidence 99999976
No 18
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.85 E-value=3.8e-21 Score=128.66 Aligned_cols=76 Identities=33% Similarity=0.573 Sum_probs=67.4
Q ss_pred CeEEEEEEcCCCcCCCeEEEEecCceEEEEeEEecccccCCceEEEEeeeeeEEEEEEECCCCCccCCeEEEEeC-CEEE
Q 037294 63 EAHIFKADLPGMRKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQFLRRFRLPENARIDQVKASTEY-GVLT 141 (161)
Q Consensus 63 ~~~~i~~~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~~-GvL~ 141 (161)
++|.|.++||||+++||+|++++ +.|+|+|++..... .. ++.+++|.|+|.||.+||.++++|+|.| |+|+
T Consensus 7 ~~~~v~~dlpG~~~edI~v~v~~-~~L~I~g~~~~~~~--~~-----~~~~~~f~r~~~LP~~vd~~~i~A~~~~~GvL~ 78 (83)
T cd06526 7 EKFQVTLDVKGFKPEELKVKVSD-NKLVVEGKHEERED--EH-----GYVSREFTRRYQLPEGVDPDSVTSSLSSDGVLT 78 (83)
T ss_pred eeEEEEEECCCCCHHHcEEEEEC-CEEEEEEEEeeecc--CC-----CEEEEEEEEEEECCCCCChHHeEEEeCCCcEEE
Confidence 59999999999999999999997 69999999876432 11 3456889999999999999999999998 9999
Q ss_pred EEEeC
Q 037294 142 VTVPK 146 (161)
Q Consensus 142 I~~pK 146 (161)
|++||
T Consensus 79 I~~Pk 83 (83)
T cd06526 79 IEAPK 83 (83)
T ss_pred EEecC
Confidence 99997
No 19
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.6e-20 Score=144.33 Aligned_cols=115 Identities=54% Similarity=0.896 Sum_probs=102.9
Q ss_pred ccccccCceeeEEECCCeEEEEEEcCCCcCCCeEEEEecCceEEEEeEEeccccc--CCceEEEEeeeeeEEEEEEECCC
Q 037294 47 ETAALANTRIDWRETPEAHIFKADLPGMRKDEVKVEIEEGNVLRISGERRKEVEE--RSDTWHRVERSSGQFLRRFRLPE 124 (161)
Q Consensus 47 ~~~~~~~p~~dv~e~~~~~~i~~~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~~--~~~~~~~~e~~~g~f~r~~~LP~ 124 (161)
.....+.++++|.|+.++|++.+++||+.+++|+|.++++++|+|+|++..+.+. ....++..|+.+|.|.|++.||+
T Consensus 78 ~~~~~~~~~~~v~e~~~~~~~~~~~Pgl~ke~iKv~~~~~~~l~isGe~~~e~e~~~~~~~~~~~E~~~g~F~r~~~lPe 157 (196)
T KOG0710|consen 78 EAKSEARVPWDVKESPDAHEFKVDLPGLKKEDIKVEVEDEKVLTISGERKKEEEESGSGKKWKRVERKLGKFKRRFELPE 157 (196)
T ss_pred cccccccCCcccccCCCceEEEeeCCCCCchhceEEeccCcEEEEecccccccccccCCccceeehhcccceEeeecCCc
Confidence 3445567788999999999999999999999999999986689999999876654 56788999999999999999999
Q ss_pred CCccCCeEEEEeCCEEEEEEeCcCC--CCCCeeEEeccC
Q 037294 125 NARIDQVKASTEYGVLTVTVPKVIA--DRPDVRAIEISG 161 (161)
Q Consensus 125 ~vd~~~i~A~~~~GvL~I~~pK~~~--~~~~~~~I~I~~ 161 (161)
+++.+.|+|.|+||+|+|++||..+ ++..++.|.|+|
T Consensus 158 nv~~d~ikA~~~nGVL~VvvpK~~~~~~~~~v~~i~i~~ 196 (196)
T KOG0710|consen 158 NVDVDEIKAEMENGVLTVVVPKLEPLLKKPKVRQIAISG 196 (196)
T ss_pred cccHHHHHHHhhCCeEEEEEecccccccCCccceeeccC
Confidence 9999999999999999999999988 577788888875
No 20
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=99.76 E-value=5.1e-18 Score=115.19 Aligned_cols=82 Identities=20% Similarity=0.337 Sum_probs=70.5
Q ss_pred eEEECCCeEEEEEEcCCCcCCCeEEEEecCceEEEEeEEecccccCCceEEEEeeeeeEEEEEEECCCCCccCCeEEEEe
Q 037294 57 DWRETPEAHIFKADLPGMRKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQFLRRFRLPENARIDQVKASTE 136 (161)
Q Consensus 57 dv~e~~~~~~i~~~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~ 136 (161)
.+..+++.|.|.+++.||+++||+|++.+ +.|+|+|++.....+ ..++ .++|.|+|.||.+||.+.|+|.+.
T Consensus 9 ~~~~~~~~f~v~ldv~gF~pEDL~Vkv~~-~~L~V~Gkh~~~~~e--~g~~-----~r~F~R~~~LP~~Vd~~~v~s~l~ 80 (91)
T cd06480 9 PPPNSSEPWKVCVNVHSFKPEELTVKTKD-GFVEVSGKHEEQQKE--GGIV-----SKNFTKKIQLPPEVDPVTVFASLS 80 (91)
T ss_pred CCCCCCCcEEEEEEeCCCCHHHcEEEEEC-CEEEEEEEECcccCC--CCEE-----EEEEEEEEECCCCCCchhEEEEeC
Confidence 35567889999999999999999999997 699999998865422 2333 467999999999999999999996
Q ss_pred -CCEEEEEEeC
Q 037294 137 -YGVLTVTVPK 146 (161)
Q Consensus 137 -~GvL~I~~pK 146 (161)
||+|+|.+|.
T Consensus 81 ~dGvL~IeaP~ 91 (91)
T cd06480 81 PEGLLIIEAPQ 91 (91)
T ss_pred CCCeEEEEcCC
Confidence 9999999984
No 21
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=4.7e-17 Score=122.57 Aligned_cols=100 Identities=23% Similarity=0.420 Sum_probs=85.6
Q ss_pred CceeeEEECCCeEEEEEEcCCCcCCCeEEEEecCceEEEEeEEecccccCCceEEEEeeeeeEEEEEEECCCCCccCCeE
Q 037294 53 NTRIDWRETPEAHIFKADLPGMRKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQFLRRFRLPENARIDQVK 132 (161)
Q Consensus 53 ~p~~dv~e~~~~~~i~~~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~ 132 (161)
....++..++++|.|.+|+..|.+++|+|++.+ +.|.|+|++.... ++..+. .++|.|+|.||.+||+++|+
T Consensus 62 ~~~~~~~~~~~~F~V~lDV~~F~PeEl~Vk~~~-~~l~V~gkHeer~--d~~G~v-----~R~F~R~y~LP~~vdp~~V~ 133 (173)
T KOG3591|consen 62 SGASEIVNDKDKFEVNLDVHQFKPEELKVKTDD-NTLEVEGKHEEKE--DEHGYV-----SRSFVRKYLLPEDVDPTSVT 133 (173)
T ss_pred ccccccccCCCcEEEEEEcccCcccceEEEeCC-CEEEEEeeecccc--CCCCeE-----EEEEEEEecCCCCCChhheE
Confidence 346788999999999999999999999999996 6999999987654 333444 33599999999999999999
Q ss_pred EEE-eCCEEEEEEeCcCCCCCCeeEEecc
Q 037294 133 AST-EYGVLTVTVPKVIADRPDVRAIEIS 160 (161)
Q Consensus 133 A~~-~~GvL~I~~pK~~~~~~~~~~I~I~ 160 (161)
+++ .||+|+|++||.+......+.|+|+
T Consensus 134 S~LS~dGvLtI~ap~~~~~~~~er~ipI~ 162 (173)
T KOG3591|consen 134 STLSSDGVLTIEAPKPPPKQDNERSIPIE 162 (173)
T ss_pred EeeCCCceEEEEccCCCCcCccceEEeEe
Confidence 999 9999999999998776556788775
No 22
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.60 E-value=1.2e-14 Score=93.80 Aligned_cols=80 Identities=50% Similarity=0.853 Sum_probs=70.7
Q ss_pred EEECCCeEEEEEEcCCCcCCCeEEEEecCceEEEEeEEecccccCCceEEEEeeeeeEEEEEEECCCCCccCCeEEEEeC
Q 037294 58 WRETPEAHIFKADLPGMRKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQFLRRFRLPENARIDQVKASTEY 137 (161)
Q Consensus 58 v~e~~~~~~i~~~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~~ 137 (161)
|.++++.|.|.+++||+.+++|.|.+.+ +.|.|+|....... .+...+.|.+.+.||..++++.++|++.+
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~~-~~l~v~~~~~~~~~--------~~~~~~~~~~~~~L~~~i~~~~~~~~~~~ 71 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEVED-NVLTISGKREEEEE--------RERSYGEFERSFELPEDVDPEKSKASLEN 71 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcCCCc--------ceEeeeeEEEEEECCCCcCHHHCEEEEEC
Confidence 4678899999999999999999999997 69999998764332 34456789999999999999999999999
Q ss_pred CEEEEEEeC
Q 037294 138 GVLTVTVPK 146 (161)
Q Consensus 138 GvL~I~~pK 146 (161)
|+|+|++||
T Consensus 72 ~~l~i~l~K 80 (80)
T cd00298 72 GVLEITLPK 80 (80)
T ss_pred CEEEEEEcC
Confidence 999999997
No 23
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.38 E-value=3.8e-12 Score=83.50 Aligned_cols=71 Identities=21% Similarity=0.302 Sum_probs=64.0
Q ss_pred EEECCCeEEEEEEcCCCcCCCeEEEEecCceEEEEeEEecccccCCceEEEEeeeeeEEEEEEECCCCCccCCeEEEEeC
Q 037294 58 WRETPEAHIFKADLPGMRKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQFLRRFRLPENARIDQVKASTEY 137 (161)
Q Consensus 58 v~e~~~~~~i~~~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~~ 137 (161)
+.++++.+.|.+++||+++++++|++++ +.|.|++. .|.+.+.||..|++++++|++.+
T Consensus 1 W~Qt~~~v~i~i~~p~v~~~~v~v~~~~-~~l~i~~~--------------------~~~~~~~l~~~I~~e~~~~~~~~ 59 (78)
T cd06469 1 WSQTDEDVKISVPLKGVKTSKVDIFCSD-LYLKVNFP--------------------PYLFELDLAAPIDDEKSSAKIGN 59 (78)
T ss_pred CcccCCEEEEEEEeCCCccccceEEEec-CEEEEcCC--------------------CEEEEEeCcccccccccEEEEeC
Confidence 4578899999999999999999999997 58998871 27889999999999999999999
Q ss_pred CEEEEEEeCcCC
Q 037294 138 GVLTVTVPKVIA 149 (161)
Q Consensus 138 GvL~I~~pK~~~ 149 (161)
|.|.|+++|.++
T Consensus 60 ~~l~i~L~K~~~ 71 (78)
T cd06469 60 GVLVFTLVKKEP 71 (78)
T ss_pred CEEEEEEEeCCC
Confidence 999999999864
No 24
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=99.15 E-value=4.9e-10 Score=84.09 Aligned_cols=80 Identities=24% Similarity=0.464 Sum_probs=63.3
Q ss_pred cCceeeEEECCC-eEEEEEEcCCCcCCC-eEEEEecC-ceEEEEeEEecccccCCceEEEEeeeeeEEEEEEECCCCCcc
Q 037294 52 ANTRIDWRETPE-AHIFKADLPGMRKDE-VKVEIEEG-NVLRISGERRKEVEERSDTWHRVERSSGQFLRRFRLPENARI 128 (161)
Q Consensus 52 ~~p~~dv~e~~~-~~~i~~~lPG~~~ed-I~v~v~~~-~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~ 128 (161)
..+.+++.+.++ .++|.++|||+++++ |+|.+..+ ..|+|+... .+.+++.||.. +.
T Consensus 90 ~~~~vdtre~dDge~~VvAdLPGVs~dd~idV~l~~d~~~L~i~~~~-------------------~~~krv~L~~~-~~ 149 (177)
T PF05455_consen 90 ESIHVDTRERDDGELVVVADLPGVSDDDAIDVTLDDDEGALTIRVGE-------------------KYLKRVALPWP-DP 149 (177)
T ss_pred ceeeeeeEecCCCcEEEEEeCCCCCcccceeeEeecCCceEEEecCC-------------------ceEeeEecCCC-cc
Confidence 457789998877 699999999999888 99999842 355554221 25679999977 67
Q ss_pred CCeEEEEeCCEEEEEEeCcCCCC
Q 037294 129 DQVKASTEYGVLTVTVPKVIADR 151 (161)
Q Consensus 129 ~~i~A~~~~GvL~I~~pK~~~~~ 151 (161)
+.++|+|+||||+|++-+.+...
T Consensus 150 e~~~~t~nNgILEIri~~~~~~~ 172 (177)
T PF05455_consen 150 EITSATFNNGILEIRIRRTEESS 172 (177)
T ss_pred ceeeEEEeCceEEEEEeecCCCC
Confidence 88999999999999998876543
No 25
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=99.08 E-value=1.4e-09 Score=71.23 Aligned_cols=76 Identities=21% Similarity=0.232 Sum_probs=65.8
Q ss_pred EEECCCeEEEEEEcCCCcCCCeEEEEecCceEEEEeEEecccccCCceEEEEeeeeeEEEEEEECCCCCccCCeEEEEeC
Q 037294 58 WRETPEAHIFKADLPGMRKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQFLRRFRLPENARIDQVKASTEY 137 (161)
Q Consensus 58 v~e~~~~~~i~~~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~~ 137 (161)
+.++++.+.|.+.+||..+++++|.+++ +.|.|++.... .+.|...+.|+..|++++.++++++
T Consensus 1 W~Q~~~~v~i~v~~~~~~~~~~~v~~~~-~~l~i~~~~~~---------------~~~~~~~~~L~~~I~~~~s~~~~~~ 64 (84)
T cd06463 1 WYQTLDEVTITIPLKDVTKKDVKVEFTP-KSLTVSVKGGG---------------GKEYLLEGELFGPIDPEESKWTVED 64 (84)
T ss_pred CcccccEEEEEEEcCCCCccceEEEEec-CEEEEEeeCCC---------------CCceEEeeEccCccchhhcEEEEeC
Confidence 3577899999999999999999999997 68999987430 1237788899999999999999999
Q ss_pred CEEEEEEeCcCC
Q 037294 138 GVLTVTVPKVIA 149 (161)
Q Consensus 138 GvL~I~~pK~~~ 149 (161)
|.|+|+++|..+
T Consensus 65 ~~l~i~L~K~~~ 76 (84)
T cd06463 65 RKIEITLKKKEP 76 (84)
T ss_pred CEEEEEEEECCC
Confidence 999999999876
No 26
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=98.85 E-value=1.9e-08 Score=66.60 Aligned_cols=77 Identities=22% Similarity=0.227 Sum_probs=66.2
Q ss_pred eEEECCCeEEEEEEcCCCcCCCeEEEEecCceEEEEeEEecccccCCceEEEEeeeeeEEEEEEECCCCCccCCeEEEEe
Q 037294 57 DWRETPEAHIFKADLPGMRKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQFLRRFRLPENARIDQVKASTE 136 (161)
Q Consensus 57 dv~e~~~~~~i~~~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~ 136 (161)
|+.++++.+.|.+.+||+.++++.|.+++ +.|.|++... . .+.|...+.|+..|+++..++++.
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~~-~~l~i~~~~~-----~----------~~~~~~~~~L~~~I~~~~s~~~~~ 64 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVEFNE-QSLSVSIILP-----G----------GSEYQLELDLFGPIDPEQSKVSVL 64 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEec-CEEEEEEECC-----C----------CCeEEEecccccccCchhcEEEEe
Confidence 57889999999999999999999999997 6899986632 0 113667889999999999999999
Q ss_pred CCEEEEEEeCcCC
Q 037294 137 YGVLTVTVPKVIA 149 (161)
Q Consensus 137 ~GvL~I~~pK~~~ 149 (161)
+|.|.|+|.|...
T Consensus 65 ~~~vei~L~K~~~ 77 (84)
T cd06466 65 PTKVEITLKKAEP 77 (84)
T ss_pred CeEEEEEEEcCCC
Confidence 9999999999865
No 27
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=98.62 E-value=1.4e-06 Score=56.38 Aligned_cols=77 Identities=19% Similarity=0.282 Sum_probs=63.1
Q ss_pred ceeeEEECCCeEEEEEEcCCC--cCCCeEEEEecCceEEEEeEEecccccCCceEEEEeeeeeEEEEEEECCCCCccCCe
Q 037294 54 TRIDWRETPEAHIFKADLPGM--RKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQFLRRFRLPENARIDQV 131 (161)
Q Consensus 54 p~~dv~e~~~~~~i~~~lPG~--~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i 131 (161)
|+++|.++++.+.|.+.+++. ++++|.|.+++ +.|.|+...... ..|.-...|...|+++..
T Consensus 1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~-~~l~v~~~~~~~---------------~~~~~~~~L~~~I~~~~s 64 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTD-TSLSVSIKSGDG---------------KEYLLEGELFGEIDPDES 64 (79)
T ss_dssp SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEET-TEEEEEEEETTS---------------CEEEEEEEBSS-BECCCE
T ss_pred CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEEe-eEEEEEEEccCC---------------ceEEEEEEEeeeEcchhc
Confidence 578999999999999999665 59999999997 589999653321 126667789999999999
Q ss_pred EEEEeCCEEEEEEeC
Q 037294 132 KASTEYGVLTVTVPK 146 (161)
Q Consensus 132 ~A~~~~GvL~I~~pK 146 (161)
++++.++.|.|+|.|
T Consensus 65 ~~~~~~~~i~i~L~K 79 (79)
T PF04969_consen 65 TWKVKDNKIEITLKK 79 (79)
T ss_dssp EEEEETTEEEEEEEB
T ss_pred EEEEECCEEEEEEEC
Confidence 999999999999987
No 28
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=98.35 E-value=8.9e-06 Score=56.59 Aligned_cols=78 Identities=10% Similarity=0.203 Sum_probs=65.5
Q ss_pred ceeeEEECCCeEEEEEEcCCCcCCCeEEEEecCceEEEEeEEecccccCCceEEEEeeeeeEEEEEEECCCCCccCCeEE
Q 037294 54 TRIDWRETPEAHIFKADLPGMRKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQFLRRFRLPENARIDQVKA 133 (161)
Q Consensus 54 p~~dv~e~~~~~~i~~~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A 133 (161)
|.+++.++.+.+.|.+.+||. +++.|.++. +.|.|++.... ++. .|.-.+.|...|+++..+.
T Consensus 1 p~~~W~Qt~~~V~i~i~~~~~--~~~~V~~~~-~~l~v~~~~~~----~~~----------~y~~~~~L~~~I~pe~s~~ 63 (108)
T cd06465 1 PPVLWAQRSDVVYLTIELPDA--KDPKIKLEP-TSLSFKAKGGG----GGK----------KYEFDLEFYKEIDPEESKY 63 (108)
T ss_pred CceeeeECCCEEEEEEEeCCC--CCcEEEEEC-CEEEEEEEcCC----CCe----------eEEEEeEhhhhccccccEE
Confidence 578999999999999999998 889999997 58999975321 111 2556779999999999999
Q ss_pred EEeCCEEEEEEeCcC
Q 037294 134 STEYGVLTVTVPKVI 148 (161)
Q Consensus 134 ~~~~GvL~I~~pK~~ 148 (161)
++.++.|.|+|.|..
T Consensus 64 ~v~~~kveI~L~K~~ 78 (108)
T cd06465 64 KVTGRQIEFVLRKKE 78 (108)
T ss_pred EecCCeEEEEEEECC
Confidence 999999999999987
No 29
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=98.26 E-value=5.3e-06 Score=67.92 Aligned_cols=65 Identities=28% Similarity=0.500 Sum_probs=56.6
Q ss_pred CCeEEEEEEcCCC-cCCCeEEEEecCceEEEEeEEecccccCCceEEEEeeeeeEEEEEEECCCCCccCCeEEEE--eCC
Q 037294 62 PEAHIFKADLPGM-RKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQFLRRFRLPENARIDQVKAST--EYG 138 (161)
Q Consensus 62 ~~~~~i~~~lPG~-~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~--~~G 138 (161)
.+.++|+++|||+ +..+|+|.|.+ +.|.|..... .|.-.+.||..||.+..+|+| +.+
T Consensus 260 p~~lvv~i~LP~~~s~~~i~LdV~~-~~l~l~~~~~------------------~y~L~l~LP~~V~~~~~~Akf~~~~~ 320 (328)
T PF08190_consen 260 PEELVVEIELPGVESASDIDLDVSE-DRLSLSSPKP------------------KYRLDLPLPYPVDEDNGKAKFDKKTK 320 (328)
T ss_pred CceEEEEEECCCcCccceeEEEEeC-CEEEEEeCCC------------------ceEEEccCCCcccCCCceEEEccCCC
Confidence 4789999999999 88999999997 5899985532 266789999999999999999 668
Q ss_pred EEEEEEe
Q 037294 139 VLTVTVP 145 (161)
Q Consensus 139 vL~I~~p 145 (161)
+|+|++|
T Consensus 321 ~L~vtlp 327 (328)
T PF08190_consen 321 TLTVTLP 327 (328)
T ss_pred EEEEEEE
Confidence 9999998
No 30
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=98.21 E-value=1.6e-05 Score=52.75 Aligned_cols=77 Identities=16% Similarity=0.234 Sum_probs=63.9
Q ss_pred eEEECCCeEEEEEEcCCCcCCCeEEEEecCceEEEEeEEecccccCCceEEEEeeeeeEEEEEEECCCCCccCCeEEEEe
Q 037294 57 DWRETPEAHIFKADLPGMRKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQFLRRFRLPENARIDQVKASTE 136 (161)
Q Consensus 57 dv~e~~~~~~i~~~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~ 136 (161)
|++++++.+.|.+.++|+.++++.|.+++ +.|.+++.... +. .|.-.+.|...|++++.+.+..
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~~-~~l~~~~~~~~-----~~----------~y~~~~~L~~~I~p~~s~~~v~ 64 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVEFEK-RELSATVKLPS-----GN----------DYSLKLHLLHPIVPEQSSYKIL 64 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEeC-CEEEEEEECCC-----CC----------cEEEeeecCceecchhcEEEEe
Confidence 57889999999999999999999999997 58999876421 11 2555678999999998888888
Q ss_pred CCEEEEEEeCcCC
Q 037294 137 YGVLTVTVPKVIA 149 (161)
Q Consensus 137 ~GvL~I~~pK~~~ 149 (161)
.+-+.|+|.|.+.
T Consensus 65 ~~kiei~L~K~~~ 77 (84)
T cd06489 65 STKIEIKLKKTEA 77 (84)
T ss_pred CcEEEEEEEcCCC
Confidence 9999999999754
No 31
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=97.99 E-value=0.00013 Score=48.76 Aligned_cols=79 Identities=15% Similarity=0.132 Sum_probs=65.9
Q ss_pred eeeEEECCCeEEEEEEcCCCcCCCeEEEEecCceEEEEeEEecccccCCceEEEEeeeeeEEEEEEECCCCCccCCeEEE
Q 037294 55 RIDWRETPEAHIFKADLPGMRKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQFLRRFRLPENARIDQVKAS 134 (161)
Q Consensus 55 ~~dv~e~~~~~~i~~~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~ 134 (161)
+.|++++++.+.|.+.+.|..++++.+.+++ +.|.|+..... + ..|.-.+.|-..|+++..+.+
T Consensus 2 R~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~-~~l~v~~~~~~-----~----------~~y~~~l~L~~~I~~~~s~~~ 65 (87)
T cd06488 2 RHDWHQTGSHVVVSVYAKNSNPELSVVEANS-TVLTIHIVFEG-----N----------KEFQLDIELWGVIDVEKSSVN 65 (87)
T ss_pred CccEeeCCCEEEEEEEECcCCccceEEEecC-CEEEEEEECCC-----C----------ceEEEEeeccceEChhHcEEE
Confidence 5789999999999999999999999999986 58888754321 0 026667789999999998888
Q ss_pred EeCCEEEEEEeCcCC
Q 037294 135 TEYGVLTVTVPKVIA 149 (161)
Q Consensus 135 ~~~GvL~I~~pK~~~ 149 (161)
....-+.|++.|.++
T Consensus 66 v~~~kvei~L~K~~~ 80 (87)
T cd06488 66 MLPTKVEIKLRKAEP 80 (87)
T ss_pred ecCcEEEEEEEeCCC
Confidence 899999999999865
No 32
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=97.98 E-value=9.6e-05 Score=48.77 Aligned_cols=74 Identities=24% Similarity=0.339 Sum_probs=60.5
Q ss_pred eEEECCCeEEEEEEcC-CCcCCCeEEEEecCceEEEEeEEecccccCCceEEEEeeeeeEEEEEEECCCCCccCCeEEEE
Q 037294 57 DWRETPEAHIFKADLP-GMRKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQFLRRFRLPENARIDQVKAST 135 (161)
Q Consensus 57 dv~e~~~~~~i~~~lP-G~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~ 135 (161)
.+.++++.+.|.+.+| ++.++||.|.+.+ +.|.|+... +. +.-.-.|...|+++....++
T Consensus 2 ~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~-~~l~v~~~~--------~~----------~~l~~~L~~~I~~~~s~w~~ 62 (85)
T cd06467 2 SWTQTLDEVTVTIPLPEGTKSKDVKVEITP-KHLKVGVKG--------GE----------PLLDGELYAKVKVDESTWTL 62 (85)
T ss_pred EEEeeCCEEEEEEECCCCCcceeEEEEEEc-CEEEEEECC--------CC----------ceEcCcccCceeEcCCEEEE
Confidence 5788999999999998 7899999999997 589988641 00 11223588999999999999
Q ss_pred eC-CEEEEEEeCcCC
Q 037294 136 EY-GVLTVTVPKVIA 149 (161)
Q Consensus 136 ~~-GvL~I~~pK~~~ 149 (161)
.+ ..|.|+++|.++
T Consensus 63 ~~~~~v~i~L~K~~~ 77 (85)
T cd06467 63 EDGKLLEITLEKRNE 77 (85)
T ss_pred eCCCEEEEEEEECCC
Confidence 99 999999999875
No 33
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=97.92 E-value=0.00023 Score=47.80 Aligned_cols=79 Identities=13% Similarity=0.250 Sum_probs=63.6
Q ss_pred eeeEEECCCeEEEEEEcCCCcC---CCeEEEEecCceEEEEeEEecccccCCceEEEEeeeeeEEEEEE-ECCCCCccCC
Q 037294 55 RIDWRETPEAHIFKADLPGMRK---DEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQFLRRF-RLPENARIDQ 130 (161)
Q Consensus 55 ~~dv~e~~~~~~i~~~lPG~~~---edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~-~LP~~vd~~~ 130 (161)
..++.++++.+.|.+.+|+..+ ++++|.++. +.|.|++... ++.+ |.-.+ .|-..|+++.
T Consensus 3 ~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~-~~l~v~~~~~-----~~~~----------~~~~~~~L~~~I~~e~ 66 (92)
T cd06468 3 KYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTE-RSFELKVHDL-----NGKN----------YRFTINRLLKKIDPEK 66 (92)
T ss_pred eeeeecCCCEEEEEEEccCCCcCCcccEEEEecC-CEEEEEEECC-----CCcE----------EEEEehHhhCccCccc
Confidence 4689999999999999999876 999999997 5899987421 1111 33344 3889999999
Q ss_pred eEEEEeCCEEEEEEeCcCC
Q 037294 131 VKASTEYGVLTVTVPKVIA 149 (161)
Q Consensus 131 i~A~~~~GvL~I~~pK~~~ 149 (161)
.+.+...+-+.|++.|.++
T Consensus 67 s~~~~~~~ki~i~L~K~~~ 85 (92)
T cd06468 67 SSFKVKTDRIVITLAKKKE 85 (92)
T ss_pred cEEEEeCCEEEEEEEeCCC
Confidence 9999999999999999875
No 34
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=97.90 E-value=0.0002 Score=47.63 Aligned_cols=75 Identities=15% Similarity=0.214 Sum_probs=59.3
Q ss_pred eEEECCCeEEEEEEcC-CCcCCCeEEEEecCceEEEEeEEecccccCCceEEEEeeeeeEEEEEEECCCCCccCCeEEEE
Q 037294 57 DWRETPEAHIFKADLP-GMRKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQFLRRFRLPENARIDQVKAST 135 (161)
Q Consensus 57 dv~e~~~~~~i~~~lP-G~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~ 135 (161)
++.++.+...|.+.+| |+.++||+|+++. +.|.|.... . .. + -.-.|...|+++..+-++
T Consensus 2 ~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~-~~l~v~~~~--~-----~~----------~-~~g~L~~~I~~d~Stw~i 62 (85)
T cd06493 2 YWQQTEEDLTLTIRLPEDTTKEDIRIKFLP-DHISIALKD--Q-----AP----------L-LEGKLYSSIDHESSTWII 62 (85)
T ss_pred ccEEeCCEEEEEEECCCCCChhhEEEEEec-CEEEEEeCC--C-----Ce----------E-EeCcccCcccccCcEEEE
Confidence 5788999999999996 9999999999997 588886420 0 00 1 133788999999888888
Q ss_pred eCC-EEEEEEeCcCCC
Q 037294 136 EYG-VLTVTVPKVIAD 150 (161)
Q Consensus 136 ~~G-vL~I~~pK~~~~ 150 (161)
++| .|.|++.|+++.
T Consensus 63 ~~~~~l~i~L~K~~~~ 78 (85)
T cd06493 63 KENKSLEVSLIKKDEG 78 (85)
T ss_pred eCCCEEEEEEEECCCC
Confidence 777 799999998653
No 35
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=97.63 E-value=0.00078 Score=45.82 Aligned_cols=78 Identities=17% Similarity=0.277 Sum_probs=62.5
Q ss_pred CceeeEEECCCeEEEEEEcC-CCcCCCeEEEEecCceEEEEeEEecccccCCceEEEEeeeeeEEEEEEECCCCCccCCe
Q 037294 53 NTRIDWRETPEAHIFKADLP-GMRKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQFLRRFRLPENARIDQV 131 (161)
Q Consensus 53 ~p~~dv~e~~~~~~i~~~lP-G~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i 131 (161)
.+.+.+.++.+.+.|.+.+| |.+++|+.|.++. +.|.|.-.. ..+. .| .|...|+++..
T Consensus 5 ~~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~-~~l~V~~~g--------~~~l-----~G------~L~~~I~~des 64 (93)
T cd06494 5 TPWGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGS-RDISLAVKG--------QEVL-----KG------KLFDSVVADEC 64 (93)
T ss_pred CCCcEEEeEcCEEEEEEECCCCCceeeEEEEEEc-CEEEEEECC--------EEEE-----cC------cccCccCcccC
Confidence 46788999999999999998 8999999999997 588887421 0111 12 58899999999
Q ss_pred EEEEeCCE-EEEEEeCcCCC
Q 037294 132 KASTEYGV-LTVTVPKVIAD 150 (161)
Q Consensus 132 ~A~~~~Gv-L~I~~pK~~~~ 150 (161)
.-++++|- |.|+|.|....
T Consensus 65 tWtled~k~l~I~L~K~~~~ 84 (93)
T cd06494 65 TWTLEDRKLIRIVLTKSNRD 84 (93)
T ss_pred EEEEECCcEEEEEEEeCCCC
Confidence 99998875 89999998643
No 36
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=97.52 E-value=0.0024 Score=44.44 Aligned_cols=78 Identities=13% Similarity=0.147 Sum_probs=61.6
Q ss_pred ceeeEEECCCeEEEEEEcCCCcCCCeEEEEecCceEEEEeEEecccccCCceEEEEeeeeeEEEEEEECCCCCccCCeEE
Q 037294 54 TRIDWRETPEAHIFKADLPGMRKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQFLRRFRLPENARIDQVKA 133 (161)
Q Consensus 54 p~~dv~e~~~~~~i~~~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A 133 (161)
|.+++.++.+.+.|++.+|+ .+|++|.+++ +.|+++|.-. ++.. |.-.+.|=..|++++.+.
T Consensus 2 p~v~WaQr~~~V~ltI~v~d--~~d~~v~l~~-~~l~f~~~~~-----~g~~----------y~~~l~l~~~I~pe~Sk~ 63 (106)
T cd00237 2 AKTLWYDRRDYVFIEFCVED--SKDVKVDFEK-SKLTFSCLNG-----DNVK----------IYNEIELYDRVDPNDSKH 63 (106)
T ss_pred CcceeeECCCEEEEEEEeCC--CCCcEEEEec-CEEEEEEECC-----CCcE----------EEEEEEeecccCcccCeE
Confidence 67899999999999999999 6899999997 5899998421 1111 334667888899997777
Q ss_pred EEeCCEEEEEEeCcCC
Q 037294 134 STEYGVLTVTVPKVIA 149 (161)
Q Consensus 134 ~~~~GvL~I~~pK~~~ 149 (161)
+...--+.|.+.|++.
T Consensus 64 ~v~~r~ve~~L~K~~~ 79 (106)
T cd00237 64 KRTDRSILCCLRKGKE 79 (106)
T ss_pred EeCCceEEEEEEeCCC
Confidence 7777788899999864
No 37
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=97.13 E-value=0.0022 Score=48.52 Aligned_cols=80 Identities=20% Similarity=0.243 Sum_probs=63.1
Q ss_pred CceeeEEECCCeEEEEEEcCCCcCCCeEEEEecCceEEEEeEEecccccCCceEEEEeeeeeEEEEEEECCCCCccCCeE
Q 037294 53 NTRIDWRETPEAHIFKADLPGMRKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQFLRRFRLPENARIDQVK 132 (161)
Q Consensus 53 ~p~~dv~e~~~~~~i~~~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~ 132 (161)
.++.|++++.+..+|.+..+++.++|+.|.+.+ +.|.+..+..... .|.-...|-..|.++..+
T Consensus 3 k~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~-~~l~~~~~~~~g~---------------~~~l~~~L~~~I~pe~~s 66 (196)
T KOG1309|consen 3 KIRHDWYQTETSVVITIFAKNVPKEDVNVEISE-NTLSIVIQLPSGS---------------EYNLQLKLYHEIIPEKSS 66 (196)
T ss_pred cccceeecCCceEEEEEEecCCCccceeEEeec-ceEEEEEecCCch---------------hhhhhHHhccccccccee
Confidence 468899999999999999999999999999997 6888775543211 133444577888888877
Q ss_pred EEEeCCEEEEEEeCcC
Q 037294 133 ASTEYGVLTVTVPKVI 148 (161)
Q Consensus 133 A~~~~GvL~I~~pK~~ 148 (161)
-+.----++|+|+|..
T Consensus 67 ~k~~stKVEI~L~K~~ 82 (196)
T KOG1309|consen 67 FKVFSTKVEITLAKAE 82 (196)
T ss_pred eEeeeeeEEEEecccc
Confidence 7777778899998853
No 38
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.11 E-value=0.0038 Score=52.07 Aligned_cols=81 Identities=20% Similarity=0.240 Sum_probs=66.8
Q ss_pred CceeeEEECCCeEEEEEEcCCCcCCCeEEEEecCceEEEEeEEecccccCCceEEEEeeeeeEEEEEEECCCCCccCCeE
Q 037294 53 NTRIDWRETPEAHIFKADLPGMRKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQFLRRFRLPENARIDQVK 132 (161)
Q Consensus 53 ~p~~dv~e~~~~~~i~~~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~ 132 (161)
.++.||+++++.+.|.|.+.|+.++++.|.+.+ +.|.|+...... . .|...+.|-..|+++..+
T Consensus 156 ~~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~-~~l~v~~~~~~~-----~----------~y~~~~~L~~~I~p~~s~ 219 (356)
T PLN03088 156 KYRHEFYQKPEEVVVTVFAKGVPAENVNVDFGE-QILSVVIEVPGE-----D----------AYHLQPRLFGKIIPDKCK 219 (356)
T ss_pred ccccceeecCCEEEEEEEecCCChHHcEEEeec-CEEEEEEecCCC-----c----------ceeecccccccccccccE
Confidence 478899999999999999999999999999997 588888643211 0 144567888999999999
Q ss_pred EEEeCCEEEEEEeCcCC
Q 037294 133 ASTEYGVLTVTVPKVIA 149 (161)
Q Consensus 133 A~~~~GvL~I~~pK~~~ 149 (161)
.+....-+.|+|.|...
T Consensus 220 ~~v~~~Kiei~l~K~~~ 236 (356)
T PLN03088 220 YEVLSTKIEIRLAKAEP 236 (356)
T ss_pred EEEecceEEEEEecCCC
Confidence 99888899999998764
No 39
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=96.90 E-value=0.013 Score=39.25 Aligned_cols=73 Identities=19% Similarity=0.277 Sum_probs=55.6
Q ss_pred EEECCCeEEEEEEcC-C--CcCCCeEEEEecCceEEEEeEEecccccCCceEEEEeeeeeEEEEEEECCCCCccCCeEEE
Q 037294 58 WRETPEAHIFKADLP-G--MRKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQFLRRFRLPENARIDQVKAS 134 (161)
Q Consensus 58 v~e~~~~~~i~~~lP-G--~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~ 134 (161)
+..+.++..|.+.+| + .++.||+|.++. +.|.|.-+.. ... -.=.|...|+++...-+
T Consensus 3 W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~-~~l~v~~~g~--------~~~----------i~G~L~~~V~~des~Wt 63 (87)
T cd06492 3 WTQTLSEVELKVPFKVSFRLKGKDVVVDIQR-KHLKVGLKGQ--------PPI----------IDGELYNEVKVEESSWL 63 (87)
T ss_pred cEeecCEEEEEEECCCCCCccceEEEEEEec-CEEEEEECCC--------ceE----------EeCcccCcccccccEEE
Confidence 567788899999996 4 889999999997 5888864211 111 11257889999999999
Q ss_pred EeCC-EEEEEEeCcCC
Q 037294 135 TEYG-VLTVTVPKVIA 149 (161)
Q Consensus 135 ~~~G-vL~I~~pK~~~ 149 (161)
+++| .|.|++-|...
T Consensus 64 led~~~l~i~L~K~~~ 79 (87)
T cd06492 64 IEDGKVVTVNLEKINK 79 (87)
T ss_pred EeCCCEEEEEEEECCC
Confidence 9886 89999999854
No 40
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=96.63 E-value=0.054 Score=36.14 Aligned_cols=77 Identities=16% Similarity=0.203 Sum_probs=54.9
Q ss_pred eeEEECCCeEEEEEEcCCC--cCCCeEEEEecCceEEEEeEEecccccCCceEEEEeeeeeEEEEEEECCCCCccCCeEE
Q 037294 56 IDWRETPEAHIFKADLPGM--RKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQFLRRFRLPENARIDQVKA 133 (161)
Q Consensus 56 ~dv~e~~~~~~i~~~lPG~--~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A 133 (161)
.||+.+++...|.+...+. ++.++.+.... +.|.|+-... .. .|...+.|=..|+.+. +.
T Consensus 1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~-~~l~v~~~~~----~~------------~~~~~~~L~~~I~~~~-~~ 62 (87)
T cd06490 1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDDQQ-RELRVEIILG----DK------------SYLLHLDLSNEVQWPC-EV 62 (87)
T ss_pred CCceECCCEEEEEEEEcccCCCCccEEEECCC-CEEEEEEECC----Cc------------eEEEeeeccccCCCCc-EE
Confidence 3789999999999998864 55555565554 4788875422 11 1666778888898775 55
Q ss_pred EEe--CCEEEEEEeCcCCC
Q 037294 134 STE--YGVLTVTVPKVIAD 150 (161)
Q Consensus 134 ~~~--~GvL~I~~pK~~~~ 150 (161)
++. -|-++|++.|.++.
T Consensus 63 ~~~~~~~KVEI~L~K~e~~ 81 (87)
T cd06490 63 RISTETGKIELVLKKKEPE 81 (87)
T ss_pred EEcccCceEEEEEEcCCCC
Confidence 554 88999999998753
No 41
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=96.15 E-value=0.095 Score=36.20 Aligned_cols=80 Identities=14% Similarity=0.270 Sum_probs=60.3
Q ss_pred CceeeEEECCCeEEEEEEcC-CC-cCCCeEEEEecCceEEEEeEEecccccCCceEEEEeeeeeEEEEEEECCCCCccCC
Q 037294 53 NTRIDWRETPEAHIFKADLP-GM-RKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQFLRRFRLPENARIDQ 130 (161)
Q Consensus 53 ~p~~dv~e~~~~~~i~~~lP-G~-~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~ 130 (161)
...+.+..|.+.+.|.+.|| |. +..+|.|.++. +.|.|.-.... ....+. .| .|+..|+.+.
T Consensus 4 ~e~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~-~~l~v~~~~~~----~~~~~i-----~G------~L~~~V~~de 67 (102)
T cd06495 4 RENYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQS-SSIRVSVRDGG----GEKVLM-----EG------EFTHKINTEN 67 (102)
T ss_pred CCceEEEeECCeEEEEEECCCCCccceEEEEEEEc-CEEEEEEecCC----CCceEE-----eC------cccCcccCcc
Confidence 45678999999999999999 64 67899999997 58888754100 001111 12 5889999999
Q ss_pred eEEEEeCC-EEEEEEeCcC
Q 037294 131 VKASTEYG-VLTVTVPKVI 148 (161)
Q Consensus 131 i~A~~~~G-vL~I~~pK~~ 148 (161)
..-++++| .|.|++-|..
T Consensus 68 s~Wtled~~~l~I~L~K~~ 86 (102)
T cd06495 68 SLWSLEPGKCVLLSLSKCS 86 (102)
T ss_pred ceEEEeCCCEEEEEEEECC
Confidence 99999986 5899999974
No 42
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]
Probab=92.31 E-value=1.3 Score=33.54 Aligned_cols=79 Identities=18% Similarity=0.344 Sum_probs=59.1
Q ss_pred ccCceeeEEECCCeEEEEEEcC-CC-cCCCeEEEEecCceEEEEeEEecccccCCceEEEEeeeeeEEEEEEECCCCCcc
Q 037294 51 LANTRIDWRETPEAHIFKADLP-GM-RKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQFLRRFRLPENARI 128 (161)
Q Consensus 51 ~~~p~~dv~e~~~~~~i~~~lP-G~-~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~ 128 (161)
...+...|..|=..+.|.+.+| |+ +..+|.+.+.. +.|.|.-+... -+. -| .|...|+.
T Consensus 16 ~~~~~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~-~hI~V~~kg~~-------~il-----dG------~L~~~vk~ 76 (179)
T KOG2265|consen 16 ADEEKYTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQS-KHIKVGLKGQP-------PIL-----DG------ELSHSVKV 76 (179)
T ss_pred ccccceeeeeehhheEEEeecCCCCcccceEEEEeee-eEEEEecCCCC-------cee-----cC------cccccccc
Confidence 3456788888888999999887 88 88999999996 57777644221 111 11 47888999
Q ss_pred CCeEEEEeCCEEEEEEeCcC
Q 037294 129 DQVKASTEYGVLTVTVPKVI 148 (161)
Q Consensus 129 ~~i~A~~~~GvL~I~~pK~~ 148 (161)
+....++++|.+.|.+-++.
T Consensus 77 des~WtiEd~k~i~i~l~K~ 96 (179)
T KOG2265|consen 77 DESTWTIEDGKMIVILLKKS 96 (179)
T ss_pred ccceEEecCCEEEEEEeecc
Confidence 99999999998777776654
No 43
>PF14913 DPCD: DPCD protein family
Probab=91.24 E-value=2.5 Score=32.40 Aligned_cols=79 Identities=16% Similarity=0.338 Sum_probs=59.3
Q ss_pred cccCceeeEEECCCeEEEEE-EcCCCcCCCeEEEEecC-ceEEEEeEEecccccCCceEEEEeeeeeEEEEEEECCCC--
Q 037294 50 ALANTRIDWRETPEAHIFKA-DLPGMRKDEVKVEIEEG-NVLRISGERRKEVEERSDTWHRVERSSGQFLRRFRLPEN-- 125 (161)
Q Consensus 50 ~~~~p~~dv~e~~~~~~i~~-~lPG~~~edI~v~v~~~-~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~-- 125 (161)
+..+|-+-=..|..+|+-++ +||. .++--+|+++++ +.++|+-.-+ .|.+.|.+|+-
T Consensus 83 Ss~nP~~~r~dTk~~fqWRIRNLPY-P~dvYsVtvd~~~r~ivvRTtNK------------------KYyKk~~IPDl~R 143 (194)
T PF14913_consen 83 SSSNPIFVRRDTKTSFQWRIRNLPY-PKDVYSVTVDEDERCIVVRTTNK------------------KYYKKFSIPDLDR 143 (194)
T ss_pred cCCCCEEEEEcCccceEEEEccCCC-CccceEEEEcCCCcEEEEECcCc------------------cceeEecCCcHHh
Confidence 34456655577888999998 7776 788888888843 5788884311 26788899852
Q ss_pred ----CccCCeEEEEeCCEEEEEEeCc
Q 037294 126 ----ARIDQVKASTEYGVLTVTVPKV 147 (161)
Q Consensus 126 ----vd~~~i~A~~~~GvL~I~~pK~ 147 (161)
.+.+.++..+.|..|.|+..|.
T Consensus 144 ~~l~l~~~~ls~~h~nNTLIIsYkKP 169 (194)
T PF14913_consen 144 CGLPLEQSALSFAHQNNTLIISYKKP 169 (194)
T ss_pred hCCCcchhhceeeeecCeEEEEecCc
Confidence 4778899999999999999875
No 44
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=88.50 E-value=2 Score=32.45 Aligned_cols=80 Identities=9% Similarity=0.185 Sum_probs=58.2
Q ss_pred cCceeeEEECCCeEEEEEEcCCCcCCCeEEEEecCceEEEEeEEecccccCCceEEEEeeeeeEEEEEEECCCCCccCCe
Q 037294 52 ANTRIDWRETPEAHIFKADLPGMRKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQFLRRFRLPENARIDQV 131 (161)
Q Consensus 52 ~~p~~dv~e~~~~~~i~~~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i 131 (161)
..|.+.|.+..+.+++++.|+- ..+..|.++. +.|+++|+-... .. .+...|.|=..||+++.
T Consensus 6 ~~p~v~Waqr~~~vyltv~Ved--~~d~~v~~e~-~~l~fs~k~~~d------~~--------~~~~~ief~~eIdpe~s 68 (180)
T KOG3158|consen 6 QPPEVKWAQRRDLVYLTVCVED--AKDVHVNLEP-SKLTFSCKSGAD------NH--------KYENEIEFFDEIDPEKS 68 (180)
T ss_pred cCCcchhhhhcCeEEEEEEecc--Cccceeeccc-cEEEEEeccCCC------ce--------eeEEeeehhhhcCHhhc
Confidence 4577888899999999999986 5567777775 589999885421 11 15567888889999987
Q ss_pred EEEEeCCEEEEEEeCcCC
Q 037294 132 KASTEYGVLTVTVPKVIA 149 (161)
Q Consensus 132 ~A~~~~GvL~I~~pK~~~ 149 (161)
+-+-. +-+...++++..
T Consensus 69 k~k~~-~r~if~i~~K~e 85 (180)
T KOG3158|consen 69 KHKRT-SRSIFCILRKKE 85 (180)
T ss_pred ccccc-ceEEEEEEEccc
Confidence 77766 666666665533
No 45
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=85.68 E-value=5 Score=32.33 Aligned_cols=86 Identities=14% Similarity=0.185 Sum_probs=68.0
Q ss_pred ccCceeeEEECCCeEEEEEEcCCCcCCCeEEEEecCceEEEEeEEecccccCCceEEEEeeeeeEEEEEEECCCCCccCC
Q 037294 51 LANTRIDWRETPEAHIFKADLPGMRKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQFLRRFRLPENARIDQ 130 (161)
Q Consensus 51 ~~~p~~dv~e~~~~~~i~~~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~ 130 (161)
...-+-||..+++.++|.+..-|.-++.-.|..+ +..|.|.-.-... -.+|...+.|=.-|++++
T Consensus 212 V~~cR~Dwhqt~~~Vti~VY~k~~lpe~s~iean-~~~l~V~ivf~~g--------------na~fd~d~kLwgvvnve~ 276 (320)
T KOG1667|consen 212 VVKCRHDWHQTNGFVTINVYAKGALPETSNIEAN-GTTLHVSIVFGFG--------------NASFDLDYKLWGVVNVEE 276 (320)
T ss_pred cccchhhhhhcCCeEEEEEEeccCCcccceeeeC-CeEEEEEEEecCC--------------Cceeeccceeeeeechhh
Confidence 3556789999999999999999999988888876 4677777443211 113777788877899999
Q ss_pred eEEEEeCCEEEEEEeCcCCCC
Q 037294 131 VKASTEYGVLTVTVPKVIADR 151 (161)
Q Consensus 131 i~A~~~~GvL~I~~pK~~~~~ 151 (161)
.++.+-.--.+|+|+|.++..
T Consensus 277 s~v~m~~tkVEIsl~k~ep~s 297 (320)
T KOG1667|consen 277 SSVVMGETKVEISLKKAEPGS 297 (320)
T ss_pred ceEEeecceEEEEEeccCCCC
Confidence 999999999999999997753
No 46
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=85.41 E-value=12 Score=27.05 Aligned_cols=83 Identities=14% Similarity=0.278 Sum_probs=51.4
Q ss_pred CceeeEEECCCeEEEEEEcCCCcCCCeEEEEecCceEEEEeEEecccccCCceEEEEeeeeeEEEEEEECCCCCccCCeE
Q 037294 53 NTRIDWRETPEAHIFKADLPGMRKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQFLRRFRLPENARIDQVK 132 (161)
Q Consensus 53 ~p~~dv~e~~~~~~i~~~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~ 132 (161)
...+.|...++ ..+++.. ..+.++++.++ +.|.|+.+....... ..+..... ...-.-.+.||+.+..++++
T Consensus 65 ~~~V~I~~~~~-~~i~v~~---~~k~~~~~~~~-~~L~I~~~~~~~~~~--~~~~~~~~-~~~~~i~I~lP~~~~l~~i~ 136 (166)
T PF13349_consen 65 NGDVEIKPSDD-DKIKVEY---NGKKPEISVEG-GTLTIKSKDRESFFF--KGFNFNNS-DNKSKITIYLPKDYKLDKID 136 (166)
T ss_pred ceeEEEEEcCC-ccEEEEE---cCcEEEEEEcC-CEEEEEEeccccccc--ceEEEccc-CCCcEEEEEECCCCceeEEE
Confidence 44566766544 4445555 21268888886 599999772211101 11211111 23355689999999889999
Q ss_pred EEEeCCEEEEE
Q 037294 133 ASTEYGVLTVT 143 (161)
Q Consensus 133 A~~~~GvL~I~ 143 (161)
....+|-++|.
T Consensus 137 i~~~~G~i~i~ 147 (166)
T PF13349_consen 137 IKTSSGDITIE 147 (166)
T ss_pred EEeccccEEEE
Confidence 99999988775
No 47
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=82.61 E-value=3 Score=27.79 Aligned_cols=33 Identities=21% Similarity=0.193 Sum_probs=28.9
Q ss_pred EEEEEECCCCCccCCeEEEEeCCEEEEEEeCcCC
Q 037294 116 FLRRFRLPENARIDQVKASTEYGVLTVTVPKVIA 149 (161)
Q Consensus 116 f~r~~~LP~~vd~~~i~A~~~~GvL~I~~pK~~~ 149 (161)
|.-...|| +++.++|+.++++|.|+|+.-+...
T Consensus 10 ~~v~adlP-G~~kedI~V~v~~~~L~I~ger~~~ 42 (87)
T cd06482 10 VLASVDVC-GFEPDQVKVKVKDGKVQVSAERENR 42 (87)
T ss_pred EEEEEECC-CCCHHHeEEEEECCEEEEEEEEecc
Confidence 66788898 8899999999999999999987643
No 48
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=78.17 E-value=7.5 Score=25.69 Aligned_cols=35 Identities=20% Similarity=0.188 Sum_probs=30.1
Q ss_pred EEEEEEECCCCCccCCeEEEEeCCEEEEEEeCcCCC
Q 037294 115 QFLRRFRLPENARIDQVKASTEYGVLTVTVPKVIAD 150 (161)
Q Consensus 115 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~~pK~~~~ 150 (161)
+|.-.+.|| .+..++|+-.++++.|+|+..+....
T Consensus 12 ~~~v~~~lP-G~~kedi~v~~~~~~L~I~g~~~~~~ 46 (90)
T cd06470 12 NYRITLAVA-GFSEDDLEIEVENNQLTVTGKKADEE 46 (90)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEEEcccc
Confidence 477889999 68999999999999999998776543
No 49
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=76.57 E-value=8.2 Score=25.69 Aligned_cols=37 Identities=30% Similarity=0.435 Sum_probs=28.2
Q ss_pred CeEEEEEEcC-CCcCCCeEEEEecCceEEEEeEEecccc
Q 037294 63 EAHIFKADLP-GMRKDEVKVEIEEGNVLRISGERRKEVE 100 (161)
Q Consensus 63 ~~~~i~~~lP-G~~~edI~v~v~~~~~L~I~g~~~~~~~ 100 (161)
..|.-.+.|| +++.+.|+-.+.+| .|+|...+.....
T Consensus 55 ~~f~r~~~lP~~vd~~~i~a~~~~G-vL~I~~pk~~~~~ 92 (102)
T PF00011_consen 55 GSFERSIRLPEDVDPDKIKASYENG-VLTITIPKKEEEE 92 (102)
T ss_dssp EEEEEEEE-STTB-GGG-EEEETTS-EEEEEEEBSSSCT
T ss_pred ceEEEEEcCCCcCCcceEEEEecCC-EEEEEEEcccccc
Confidence 4677789999 78999999999987 9999998876543
No 50
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=75.80 E-value=1.9 Score=35.15 Aligned_cols=82 Identities=21% Similarity=0.110 Sum_probs=63.0
Q ss_pred cCceeeEEECCCeEEEEEEcCCCcCCCeEEEEecCceEEEEeEEecccccCCceEEEEeeeeeEEEEEEECCCCCccCCe
Q 037294 52 ANTRIDWRETPEAHIFKADLPGMRKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQFLRRFRLPENARIDQV 131 (161)
Q Consensus 52 ~~p~~dv~e~~~~~~i~~~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i 131 (161)
...++++.+|.....|-+.-|-+..++|++.++. |+|.|+-+..... --+.-.+.|-..|+++..
T Consensus 175 ~~i~yd~s~Ts~t~~ifiy~~pv~deqVs~~~e~-NTL~I~~q~~~~~--------------~~~~~~~~Ly~ev~P~~~ 239 (368)
T COG5091 175 MEIAYDFSETSDTAIIFIYRPPVGDEQVSPVLEG-NTLSISYQPRRLR--------------LWNDITISLYKEVYPDIR 239 (368)
T ss_pred ceeeeeccccceeEEEEEecCCCCccccceeecC-Ccceeeeeccccc--------------hHHHhhhhhhhhcCcchh
Confidence 4567888899999999999999999999999985 7999986543211 114456778888999888
Q ss_pred EEEEeCCEEEEEEeCcC
Q 037294 132 KASTEYGVLTVTVPKVI 148 (161)
Q Consensus 132 ~A~~~~GvL~I~~pK~~ 148 (161)
+-+.--.++.|++-|..
T Consensus 240 s~k~fsK~~e~~l~KV~ 256 (368)
T COG5091 240 SIKSFSKRVEVHLRKVE 256 (368)
T ss_pred hhhhcchhheehhhhhh
Confidence 77776688888887754
No 51
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=75.80 E-value=8.4 Score=25.28 Aligned_cols=33 Identities=12% Similarity=0.110 Sum_probs=28.1
Q ss_pred EEEEEEECCCCCccCCeEEEEeCCEEEEEEeCcC
Q 037294 115 QFLRRFRLPENARIDQVKASTEYGVLTVTVPKVI 148 (161)
Q Consensus 115 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~~pK~~ 148 (161)
.|.-.+.|| ++.+++|+.++++|.|+|+.-+..
T Consensus 8 ~y~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~~ 40 (83)
T cd06476 8 KYQVFLDVC-HFTPDEITVRTVDNLLEVSARHPQ 40 (83)
T ss_pred eEEEEEEcC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 377788897 788999999999999999987643
No 52
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=75.52 E-value=7.8 Score=25.31 Aligned_cols=32 Identities=3% Similarity=0.033 Sum_probs=28.2
Q ss_pred EEEEEEECCCCCccCCeEEEEeCCEEEEEEeCc
Q 037294 115 QFLRRFRLPENARIDQVKASTEYGVLTVTVPKV 147 (161)
Q Consensus 115 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~~pK~ 147 (161)
.|.-.+.|| ++++++|+-++.++.|+|+.-+.
T Consensus 8 ~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~~ 39 (83)
T cd06478 8 RFSVNLDVK-HFSPEELSVKVLGDFVEIHGKHE 39 (83)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 477788998 89999999999999999998654
No 53
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=74.65 E-value=8.1 Score=25.32 Aligned_cols=33 Identities=9% Similarity=0.152 Sum_probs=28.7
Q ss_pred EEEEEEECCCCCccCCeEEEEeCCEEEEEEeCcC
Q 037294 115 QFLRRFRLPENARIDQVKASTEYGVLTVTVPKVI 148 (161)
Q Consensus 115 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~~pK~~ 148 (161)
.|.-.+.|| .+++++|+.+.++|.|+|+--|..
T Consensus 9 ~~~v~~dlp-G~~pedi~V~v~~~~L~I~ger~~ 41 (81)
T cd06479 9 TYQFAVDVS-DFSPEDIIVTTSNNQIEVHAEKLA 41 (81)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEEEec
Confidence 377788998 899999999999999999987753
No 54
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=74.15 E-value=7.9 Score=25.50 Aligned_cols=32 Identities=13% Similarity=0.077 Sum_probs=28.2
Q ss_pred EEEEEECCCCCccCCeEEEEeCCEEEEEEeCcC
Q 037294 116 FLRRFRLPENARIDQVKASTEYGVLTVTVPKVI 148 (161)
Q Consensus 116 f~r~~~LP~~vd~~~i~A~~~~GvL~I~~pK~~ 148 (161)
|.-.+.|| .++++.|+-++++|.|+|+--+..
T Consensus 9 ~~v~~dlp-G~~~edI~V~v~~~~L~I~ge~~~ 40 (83)
T cd06477 9 FQILLDVV-QFRPEDIIIQVFEGWLLIKGQHGV 40 (83)
T ss_pred EEEEEEcC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 77788897 788999999999999999997754
No 55
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=73.51 E-value=9.5 Score=25.13 Aligned_cols=32 Identities=3% Similarity=0.016 Sum_probs=27.7
Q ss_pred EEEEEEECCCCCccCCeEEEEeCCEEEEEEeCc
Q 037294 115 QFLRRFRLPENARIDQVKASTEYGVLTVTVPKV 147 (161)
Q Consensus 115 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~~pK~ 147 (161)
.|.-.+.|| ++++++|+.+..+|.|+|+--+.
T Consensus 11 ~~~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~ 42 (86)
T cd06497 11 KFTIYLDVK-HFSPEDLTVKVLDDYVEIHGKHS 42 (86)
T ss_pred EEEEEEECC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 377788897 88999999999999999998654
No 56
>PRK10743 heat shock protein IbpA; Provisional
Probab=72.29 E-value=9.7 Score=27.55 Aligned_cols=32 Identities=6% Similarity=0.067 Sum_probs=25.9
Q ss_pred EEEEEECCCCCccCCeEEEEeCCEEEEEEeCcC
Q 037294 116 FLRRFRLPENARIDQVKASTEYGVLTVTVPKVI 148 (161)
Q Consensus 116 f~r~~~LP~~vd~~~i~A~~~~GvL~I~~pK~~ 148 (161)
|.-...|| +++.++|+.++++|+|+|+.-+..
T Consensus 47 ~~v~aelP-Gv~kedi~V~v~~~~LtI~ge~~~ 78 (137)
T PRK10743 47 YRIAIAVA-GFAESELEITAQDNLLVVKGAHAD 78 (137)
T ss_pred EEEEEECC-CCCHHHeEEEEECCEEEEEEEECc
Confidence 33445688 899999999999999999987654
No 57
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=72.16 E-value=7.2 Score=24.79 Aligned_cols=33 Identities=27% Similarity=0.382 Sum_probs=28.2
Q ss_pred CCCeEEEEEEcC-CCcCCCeEEEEecCceEEEEeE
Q 037294 61 TPEAHIFKADLP-GMRKDEVKVEIEEGNVLRISGE 94 (161)
Q Consensus 61 ~~~~~~i~~~lP-G~~~edI~v~v~~~~~L~I~g~ 94 (161)
....|.-.+.|| +++.+.++..+.+| .|+|+..
T Consensus 54 ~~~~f~r~~~LP~~vd~~~i~a~~~~G-~L~I~~p 87 (88)
T cd06464 54 SYGSFSRSFRLPEDVDPDKIKASLENG-VLTITLP 87 (88)
T ss_pred eCcEEEEEEECCCCcCHHHcEEEEeCC-EEEEEEc
Confidence 357899999999 78999999999986 9999853
No 58
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=69.82 E-value=7.7 Score=25.56 Aligned_cols=30 Identities=30% Similarity=0.448 Sum_probs=25.6
Q ss_pred CeEEEEEEcCCCcCCCeEEEEecCceEEEEe
Q 037294 63 EAHIFKADLPGMRKDEVKVEIEEGNVLRISG 93 (161)
Q Consensus 63 ~~~~i~~~lPG~~~edI~v~v~~~~~L~I~g 93 (161)
+.|.-.+.||.+..+.|+-++.+| +|+|+-
T Consensus 62 g~f~r~~~lp~v~~~~i~A~~~dG-vL~I~l 91 (93)
T cd06471 62 GSFSRSFYLPNVDEEEIKAKYENG-VLKITL 91 (93)
T ss_pred cEEEEEEECCCCCHHHCEEEEECC-EEEEEE
Confidence 457777889999999999999987 999974
No 59
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=67.85 E-value=24 Score=21.84 Aligned_cols=41 Identities=15% Similarity=0.287 Sum_probs=31.7
Q ss_pred eeeEE-ECCCeEEEEEEcCCCcCCCeEEEEecCceEEEEeEE
Q 037294 55 RIDWR-ETPEAHIFKADLPGMRKDEVKVEIEEGNVLRISGER 95 (161)
Q Consensus 55 ~~dv~-e~~~~~~i~~~lPG~~~edI~v~v~~~~~L~I~g~~ 95 (161)
++.+. -..+.|.|++..+|+..-.-.|.+..|....|+..-
T Consensus 26 p~~~~~l~~G~~~v~v~~~Gy~~~~~~v~v~~~~~~~v~~~L 67 (71)
T PF08308_consen 26 PLTLKDLPPGEHTVTVEKPGYEPYTKTVTVKPGETTTVNVTL 67 (71)
T ss_pred cceeeecCCccEEEEEEECCCeeEEEEEEECCCCEEEEEEEE
Confidence 44555 346789999999999998888888866677777654
No 60
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=67.49 E-value=9.5 Score=25.15 Aligned_cols=31 Identities=32% Similarity=0.463 Sum_probs=27.0
Q ss_pred CCeEEEEEEcC-CCcCCCeEEEEecCceEEEEe
Q 037294 62 PEAHIFKADLP-GMRKDEVKVEIEEGNVLRISG 93 (161)
Q Consensus 62 ~~~~~i~~~lP-G~~~edI~v~v~~~~~L~I~g 93 (161)
...|.-.+.|| +++.+.|+-++.+| +|+|+-
T Consensus 59 ~g~f~r~i~LP~~v~~~~i~A~~~nG-vL~I~l 90 (92)
T cd06472 59 SGRFVRRFRLPENADADEVKAFLENG-VLTVTV 90 (92)
T ss_pred ccEEEEEEECCCCCCHHHCEEEEECC-EEEEEe
Confidence 45888899999 68999999999997 999974
No 61
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=67.29 E-value=13 Score=24.03 Aligned_cols=34 Identities=12% Similarity=0.103 Sum_probs=29.9
Q ss_pred EEEEEEECCCCCccCCeEEEEeCCEEEEEEeCcCC
Q 037294 115 QFLRRFRLPENARIDQVKASTEYGVLTVTVPKVIA 149 (161)
Q Consensus 115 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~~pK~~~ 149 (161)
.|.-.+.|| ++.+++|+..++++.|+|+..+...
T Consensus 8 ~~~v~~dlp-G~~~edI~v~v~~~~L~I~g~~~~~ 41 (83)
T cd06526 8 KFQVTLDVK-GFKPEELKVKVSDNKLVVEGKHEER 41 (83)
T ss_pred eEEEEEECC-CCCHHHcEEEEECCEEEEEEEEeee
Confidence 488899999 5999999999999999999987654
No 62
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=67.04 E-value=35 Score=25.90 Aligned_cols=45 Identities=29% Similarity=0.377 Sum_probs=31.1
Q ss_pred CCCeEEEEecCceEEEEeEEecccccCCceEEEEeeeeeEEEEEEECCCCCccCCeEEEEeCCEEEEEEe
Q 037294 76 KDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQFLRRFRLPENARIDQVKASTEYGVLTVTVP 145 (161)
Q Consensus 76 ~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~~GvL~I~~p 145 (161)
|++++|++++ +.++|+|.+. +..+.+ |.. .++...++|.|.|+..
T Consensus 13 P~~V~v~i~~-~~v~VkGp~G------------------~L~~~~--~~~----~v~i~~~~~~i~v~~~ 57 (180)
T PRK05518 13 PEGVTVEIEG-LVVTVKGPKG------------------ELTRDF--WYP----GVTISVEDGKVVIETE 57 (180)
T ss_pred CCCCEEEEEC-CEEEEECCCe------------------EEEEEe--cCC----cEEEEEECCEEEEEEC
Confidence 6789999986 6999998843 344443 321 4566778888888754
No 63
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=65.96 E-value=42 Score=25.17 Aligned_cols=45 Identities=24% Similarity=0.437 Sum_probs=31.1
Q ss_pred CCCeEEEEecCceEEEEeEEecccccCCceEEEEeeeeeEEEEEEECCCCCccCCeEEEEeCCEEEEEEe
Q 037294 76 KDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQFLRRFRLPENARIDQVKASTEYGVLTVTVP 145 (161)
Q Consensus 76 ~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~~GvL~I~~p 145 (161)
|++|+|++++ +.++|+|.+ |+..+.+. |. .++...+++.|.|..+
T Consensus 7 P~~V~v~i~~-~~i~vkGp~------------------G~L~~~~~-~~-----~v~i~~~~~~i~v~~~ 51 (170)
T TIGR03653 7 PEGVSVTIEG-NIVTVKGPK------------------GEVTRELW-YP-----GIEISVEDGKVVIETD 51 (170)
T ss_pred CCCCEEEEeC-CEEEEECCC------------------eEEEEEEe-CC-----cEEEEEeCCEEEEEeC
Confidence 6788999986 699999885 33444442 33 4555678888888854
No 64
>PF12992 DUF3876: Domain of unknown function, B. Theta Gene description (DUF3876); InterPro: IPR024452 This bacterial family of conserved proteins has no known function.
Probab=65.90 E-value=23 Score=24.04 Aligned_cols=41 Identities=10% Similarity=0.076 Sum_probs=31.3
Q ss_pred ccCceeeEEECCCeEEEEEEcCCC-----cCCCeEEEEecCceEEEE
Q 037294 51 LANTRIDWRETPEAHIFKADLPGM-----RKDEVKVEIEEGNVLRIS 92 (161)
Q Consensus 51 ~~~p~~dv~e~~~~~~i~~~lPG~-----~~edI~v~v~~~~~L~I~ 92 (161)
...|.+.|+++++.|.|.+--+.. .++...|+-++| .+.|.
T Consensus 23 ~~~P~v~I~r~g~~Y~vti~~~~~~~~~~~p~tY~i~~~~g-~~fI~ 68 (95)
T PF12992_consen 23 NGKPDVTIYRNGGSYKVTITYRSGYTGRAKPETYPIQEEDG-NLFIE 68 (95)
T ss_pred CCCCCEEEEECCCeEEEEEEEEcCcCCcccceEEEEEEeCC-EEEEe
Confidence 357999999999999998866543 667777887776 56665
No 65
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=64.98 E-value=18 Score=23.85 Aligned_cols=32 Identities=13% Similarity=0.100 Sum_probs=27.7
Q ss_pred EEEEEECCCCCccCCeEEEEeCCEEEEEEeCcC
Q 037294 116 FLRRFRLPENARIDQVKASTEYGVLTVTVPKVI 148 (161)
Q Consensus 116 f~r~~~LP~~vd~~~i~A~~~~GvL~I~~pK~~ 148 (161)
|.-.+.|| .+.+++|+.+++++.|+|+.-+..
T Consensus 9 ~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~~~ 40 (87)
T cd06481 9 FSLKLDVR-GFSPEDLSVRVDGRKLVVTGKREK 40 (87)
T ss_pred EEEEEECC-CCChHHeEEEEECCEEEEEEEEee
Confidence 66788887 788999999999999999997653
No 66
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=64.82 E-value=15 Score=24.63 Aligned_cols=30 Identities=27% Similarity=0.339 Sum_probs=25.4
Q ss_pred CeEEEEEEcC-CCcCCCeEEEEe-cCceEEEEe
Q 037294 63 EAHIFKADLP-GMRKDEVKVEIE-EGNVLRISG 93 (161)
Q Consensus 63 ~~~~i~~~lP-G~~~edI~v~v~-~~~~L~I~g 93 (161)
..|.=.+.|| +++.++|+-.+. +| .|+|.+
T Consensus 58 r~F~R~~~LP~~Vd~~~v~s~l~~dG-vL~Iea 89 (91)
T cd06480 58 KNFTKKIQLPPEVDPVTVFASLSPEG-LLIIEA 89 (91)
T ss_pred EEEEEEEECCCCCCchhEEEEeCCCC-eEEEEc
Confidence 4566778999 899999999999 76 999986
No 67
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=63.61 E-value=22 Score=23.32 Aligned_cols=33 Identities=12% Similarity=0.145 Sum_probs=28.6
Q ss_pred EEEEEEECCCCCccCCeEEEEeCCEEEEEEeCcC
Q 037294 115 QFLRRFRLPENARIDQVKASTEYGVLTVTVPKVI 148 (161)
Q Consensus 115 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~~pK~~ 148 (161)
.|.-.+.|| ++++++|+-++.++.|+|+.-+..
T Consensus 11 ~~~v~~dlP-G~~~edi~V~v~~~~L~I~g~~~~ 43 (86)
T cd06475 11 RWKVSLDVN-HFAPEELVVKTKDGVVEITGKHEE 43 (86)
T ss_pred eEEEEEECC-CCCHHHEEEEEECCEEEEEEEECc
Confidence 377788997 899999999999999999997653
No 68
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=63.03 E-value=23 Score=25.48 Aligned_cols=35 Identities=14% Similarity=0.253 Sum_probs=27.3
Q ss_pred CeEEEEEEcC-CCcCCCeEEEEecCceEEEEeEEecc
Q 037294 63 EAHIFKADLP-GMRKDEVKVEIEEGNVLRISGERRKE 98 (161)
Q Consensus 63 ~~~~i~~~lP-G~~~edI~v~v~~~~~L~I~g~~~~~ 98 (161)
..|.-.+.|| +++++.+.-++.+| +|+|.-.+...
T Consensus 100 ~~f~r~~~Lp~~v~~~~~~A~~~nG-vL~I~lpk~~~ 135 (146)
T COG0071 100 GEFERTFRLPEKVDPEVIKAKYKNG-LLTVTLPKAEP 135 (146)
T ss_pred eeEEEEEECcccccccceeeEeeCc-EEEEEEecccc
Confidence 4577778888 56777889999887 99998777554
No 69
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=62.11 E-value=21 Score=23.34 Aligned_cols=32 Identities=6% Similarity=0.075 Sum_probs=27.5
Q ss_pred EEEEEEECCCCCccCCeEEEEeCCEEEEEEeCc
Q 037294 115 QFLRRFRLPENARIDQVKASTEYGVLTVTVPKV 147 (161)
Q Consensus 115 ~f~r~~~LP~~vd~~~i~A~~~~GvL~I~~pK~ 147 (161)
.|.-.+.|| ++++++|+.+..++.|+|..-+.
T Consensus 8 ~~~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~ 39 (84)
T cd06498 8 KFSVNLDVK-HFSPEELKVKVLGDFIEIHGKHE 39 (84)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 477788896 89999999999999999998653
No 70
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=62.03 E-value=46 Score=25.01 Aligned_cols=44 Identities=34% Similarity=0.543 Sum_probs=30.6
Q ss_pred CCCeEEEEecCceEEEEeEEecccccCCceEEEEeeeeeEEEEEEECCCCCccCCeEEEEeCCEEEEEEe
Q 037294 76 KDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQFLRRFRLPENARIDQVKASTEYGVLTVTVP 145 (161)
Q Consensus 76 ~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~~GvL~I~~p 145 (161)
|++|+|++++ +.|+|+|.+ |+..+.+ |. .+....+++.|.|...
T Consensus 11 P~~V~v~~~~-~~v~v~Gp~------------------G~l~~~l--~~-----~i~i~~~~~~i~v~~~ 54 (175)
T TIGR03654 11 PAGVEVTIDG-NVVTVKGPK------------------GELSRTL--HP-----GVTVKVEDGQLTVSRP 54 (175)
T ss_pred CCCcEEEEeC-CEEEEEcCC------------------eEEEEEc--CC-----CeEEEEECCEEEEEec
Confidence 6789999986 699999874 3344444 54 3455668888777754
No 71
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=60.36 E-value=22 Score=25.93 Aligned_cols=32 Identities=19% Similarity=0.104 Sum_probs=25.9
Q ss_pred EEEEEECCCCCccCCeEEEEeCCEEEEEEeCcC
Q 037294 116 FLRRFRLPENARIDQVKASTEYGVLTVTVPKVI 148 (161)
Q Consensus 116 f~r~~~LP~~vd~~~i~A~~~~GvL~I~~pK~~ 148 (161)
|.-...|| +++.++|+-.+++|.|+|+--+..
T Consensus 45 y~v~adlP-Gv~kedi~V~v~~~~LtI~ge~~~ 76 (142)
T PRK11597 45 YRITLALA-GFRQEDLDIQLEGTRLTVKGTPEQ 76 (142)
T ss_pred EEEEEEeC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 44455687 889999999999999999997653
No 72
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=60.08 E-value=20 Score=21.61 Aligned_cols=26 Identities=31% Similarity=0.610 Sum_probs=20.0
Q ss_pred CCCcCCCeEEEEecCceEEEEeEEecc
Q 037294 72 PGMRKDEVKVEIEEGNVLRISGERRKE 98 (161)
Q Consensus 72 PG~~~edI~v~v~~~~~L~I~g~~~~~ 98 (161)
++++..+|+|.+.+| .++++|.-...
T Consensus 12 ~~~~~~~i~v~v~~g-~v~L~G~v~s~ 37 (64)
T PF04972_consen 12 PWLPDSNISVSVENG-VVTLSGEVPSQ 37 (64)
T ss_dssp -CTT-TTEEEEEECT-EEEEEEEESSC
T ss_pred cccCCCeEEEEEECC-EEEEEeeCcHH
Confidence 356777999999985 99999998643
No 73
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=59.57 E-value=49 Score=24.89 Aligned_cols=44 Identities=32% Similarity=0.504 Sum_probs=30.2
Q ss_pred CCCeEEEEecCceEEEEeEEecccccCCceEEEEeeeeeEEEEEEECCCCCccCCeEEEEeCCEEEEEEe
Q 037294 76 KDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQFLRRFRLPENARIDQVKASTEYGVLTVTVP 145 (161)
Q Consensus 76 ~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~~GvL~I~~p 145 (161)
|++|+|++++ +.|+|+|.+ |...+.+ |.. +....+++.|.|...
T Consensus 12 P~~V~v~~~~-~~v~vkGp~------------------G~l~~~~--~~~-----v~i~~~~~~i~v~~~ 55 (178)
T PRK05498 12 PAGVEVTING-NVVTVKGPK------------------GELSRTL--NPD-----VTVKVEDNEITVTRP 55 (178)
T ss_pred CCCCEEEEEC-CEEEEECCC------------------EEEEEEc--CCC-----eEEEEECCEEEEEcC
Confidence 6789999986 699999874 3355544 443 445568887777754
No 74
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=57.57 E-value=36 Score=21.21 Aligned_cols=33 Identities=21% Similarity=0.421 Sum_probs=27.9
Q ss_pred CeEEEEEEcCC-CcCCCeEEEEecCceEEEEeEEe
Q 037294 63 EAHIFKADLPG-MRKDEVKVEIEEGNVLRISGERR 96 (161)
Q Consensus 63 ~~~~i~~~lPG-~~~edI~v~v~~~~~L~I~g~~~ 96 (161)
+.|.+.++||+ +++++.+.++.+| .|.|+-.+.
T Consensus 36 ~~~~~~~~l~~~I~~e~~~~~~~~~-~l~i~L~K~ 69 (78)
T cd06469 36 PPYLFELDLAAPIDDEKSSAKIGNG-VLVFTLVKK 69 (78)
T ss_pred CCEEEEEeCcccccccccEEEEeCC-EEEEEEEeC
Confidence 56999999996 6999999999985 899996664
No 75
>PTZ00027 60S ribosomal protein L6; Provisional
Probab=56.37 E-value=57 Score=24.96 Aligned_cols=47 Identities=15% Similarity=0.234 Sum_probs=31.8
Q ss_pred CCCeEEEEecCceEEEEeEEecccccCCceEEEEeeeeeEEEEEEECCCCCccCCeEEEEeCCEEEEEEe
Q 037294 76 KDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQFLRRFRLPENARIDQVKASTEYGVLTVTVP 145 (161)
Q Consensus 76 ~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~~GvL~I~~p 145 (161)
|++|+|++++ +.++|+|.+. +..+. ||..- ..+....++|.|.|+-+
T Consensus 13 P~~V~V~i~~-~~v~VkGp~G------------------~L~~~--~~~~~--~~i~i~~~~~~i~v~~~ 59 (190)
T PTZ00027 13 PEGVTVTVKS-RKVTVTGKYG------------------ELTRS--FRHLP--VDIKLSKDGKYIKVEMW 59 (190)
T ss_pred CCCCEEEEEC-CEEEEECCCc------------------eEEEE--ecCCC--ceEEEEeCCCEEEEEeC
Confidence 6899999986 6999998743 34443 33311 24666778888777744
No 76
>PF01954 DUF104: Protein of unknown function DUF104; InterPro: IPR008203 This family includes short archaebacterial proteins of unknown function. Archaeoglobus fulgidus has twelve copies of this protein, with several being clustered together in the genome.; PDB: 2NWT_A.
Probab=54.87 E-value=11 Score=23.34 Aligned_cols=19 Identities=32% Similarity=0.288 Sum_probs=12.0
Q ss_pred CCeEEEEeCCEEEEEEeCc
Q 037294 129 DQVKASTEYGVLTVTVPKV 147 (161)
Q Consensus 129 ~~i~A~~~~GvL~I~~pK~ 147 (161)
..|.|.|+||+|.-.=|-.
T Consensus 3 ~~I~aiYe~GvlkPl~~~~ 21 (60)
T PF01954_consen 3 KVIEAIYENGVLKPLEPVD 21 (60)
T ss_dssp --EEEEEETTEEEECS---
T ss_pred ceEEEEEECCEEEECCCCC
Confidence 4589999999998654433
No 77
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=54.85 E-value=29 Score=22.09 Aligned_cols=30 Identities=27% Similarity=0.273 Sum_probs=26.2
Q ss_pred EEEEEECCCCCccCCeEEEEeCCEEEEEEe
Q 037294 116 FLRRFRLPENARIDQVKASTEYGVLTVTVP 145 (161)
Q Consensus 116 f~r~~~LP~~vd~~~i~A~~~~GvL~I~~p 145 (161)
..-.|.+|..++.++++..+.+.-|.|.+.
T Consensus 10 V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~ 39 (85)
T cd06467 10 VTVTIPLPEGTKSKDVKVEITPKHLKVGVK 39 (85)
T ss_pred EEEEEECCCCCcceeEEEEEEcCEEEEEEC
Confidence 556778999999999999999999999986
No 78
>PRK10568 periplasmic protein; Provisional
Probab=54.27 E-value=28 Score=26.73 Aligned_cols=25 Identities=16% Similarity=0.363 Sum_probs=21.1
Q ss_pred CCCcCCCeEEEEecCceEEEEeEEec
Q 037294 72 PGMRKDEVKVEIEEGNVLRISGERRK 97 (161)
Q Consensus 72 PG~~~edI~v~v~~~~~L~I~g~~~~ 97 (161)
++++..+|+|.+.+| .++++|.-..
T Consensus 73 ~~i~~~~I~V~v~~G-~V~L~G~V~s 97 (203)
T PRK10568 73 DNIKSTDISVKTHQK-VVTLSGFVES 97 (203)
T ss_pred CCCCCCceEEEEECC-EEEEEEEeCC
Confidence 567778999999987 9999999874
No 79
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=48.93 E-value=72 Score=24.02 Aligned_cols=44 Identities=18% Similarity=0.431 Sum_probs=29.8
Q ss_pred CCCeEEEEecCceEEEEeEEecccccCCceEEEEeeeeeEEEEEEECCCCCccCCeEEEEeCCEEEEEEe
Q 037294 76 KDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQFLRRFRLPENARIDQVKASTEYGVLTVTVP 145 (161)
Q Consensus 76 ~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~~GvL~I~~p 145 (161)
|++|+|++++ +.|+|+|.+. +.. ..||.. +....+++.|.|..+
T Consensus 12 P~~V~v~i~~-~~v~vkGp~G------------------~l~--~~~~~~-----v~i~~~~~~i~v~~~ 55 (178)
T CHL00140 12 PDNVNVSIDD-QIIKVKGPKG------------------TLS--RKIPDL-----ITIEIQDNSLFVSKK 55 (178)
T ss_pred CCCCEEEEEC-CEEEEECCCE------------------EEE--EECCCC-----eEEEEeCCEEEEEcC
Confidence 5788899985 6999998743 233 355553 455668887777654
No 80
>PTZ00179 60S ribosomal protein L9; Provisional
Probab=47.02 E-value=84 Score=24.01 Aligned_cols=47 Identities=13% Similarity=0.280 Sum_probs=30.8
Q ss_pred CCCeEEEEecCceEEEEeEEecccccCCceEEEEeeeeeEEEEEEECCCCCccCCeEEEEeCCEEEEEEe
Q 037294 76 KDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQFLRRFRLPENARIDQVKASTEYGVLTVTVP 145 (161)
Q Consensus 76 ~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~~GvL~I~~p 145 (161)
|++|+|++++ +.|+|+|.+. +.++ .||..- -.+....+++.|.|+-+
T Consensus 12 P~~V~V~i~~-~~ItVkGpkG------------------~Ls~--~~~~~~--~~i~i~~~~~~I~v~~~ 58 (189)
T PTZ00179 12 PEDVTVSVKD-RIVTVKGKRG------------------TLTK--DLRHLQ--LDFRVNKKNRTFTAVRW 58 (189)
T ss_pred CCCCEEEEeC-CEEEEECCCc------------------EEEE--EcCCCC--cEEEEEecCCEEEEEeC
Confidence 6889999986 6999998853 2333 444320 13555677888888744
No 81
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=45.44 E-value=59 Score=24.48 Aligned_cols=32 Identities=22% Similarity=0.274 Sum_probs=25.8
Q ss_pred EEEcC-CCcCCCeEEEEecCceEEEEeEEeccc
Q 037294 68 KADLP-GMRKDEVKVEIEEGNVLRISGERRKEV 99 (161)
Q Consensus 68 ~~~lP-G~~~edI~v~v~~~~~L~I~g~~~~~~ 99 (161)
+.-|| |++++.|.=.+..+.+|+|+|.+....
T Consensus 120 ~y~LP~~vdp~~V~S~LS~dGvLtI~ap~~~~~ 152 (173)
T KOG3591|consen 120 KYLLPEDVDPTSVTSTLSSDGVLTIEAPKPPPK 152 (173)
T ss_pred EecCCCCCChhheEEeeCCCceEEEEccCCCCc
Confidence 35688 999999999998444999999987644
No 82
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=44.90 E-value=93 Score=20.78 Aligned_cols=31 Identities=16% Similarity=0.291 Sum_probs=27.5
Q ss_pred eEEEEEEECCCCCccCCeEEEEeCCEEEEEE
Q 037294 114 GQFLRRFRLPENARIDQVKASTEYGVLTVTV 144 (161)
Q Consensus 114 g~f~r~~~LP~~vd~~~i~A~~~~GvL~I~~ 144 (161)
....-+|+||.++..++++..++..-|+|.+
T Consensus 15 ~eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~ 45 (93)
T cd06494 15 DEVFIEVNVPPGTRAKDVKCKLGSRDISLAV 45 (93)
T ss_pred CEEEEEEECCCCCceeeEEEEEEcCEEEEEE
Confidence 3466788999999999999999999999998
No 83
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=44.23 E-value=25 Score=24.21 Aligned_cols=17 Identities=35% Similarity=0.472 Sum_probs=15.1
Q ss_pred CCeEEEEeCCEEEEEEe
Q 037294 129 DQVKASTEYGVLTVTVP 145 (161)
Q Consensus 129 ~~i~A~~~~GvL~I~~p 145 (161)
..+.+.+.+|||+|+++
T Consensus 28 ~d~D~e~~~gVLti~f~ 44 (105)
T cd00503 28 ADIDVETQGGVLTLTFG 44 (105)
T ss_pred cCEeeeccCCEEEEEEC
Confidence 56788899999999998
No 84
>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L6 is a protein from the large (50S) subunit. In Escherichia coli, it is located in the aminoacyl-tRNA binding site of the peptidyltransferase centre, and is known to bind directly to 23S rRNA. It belongs to a family of ribosomal proteins, including L6 from bacteria, cyanelles (structures that perform similar functions to chloroplasts, but have structural and biochemical characteristics of Cyanobacteria) and mitochondria; and L9 from mammals, Drosophila, plants and yeast. L6 contains two domains with almost identical folds, suggesting that is was derived by the duplication of an ancient RNA-binding protein gene. Analysis reveals several sites on the protein surface where interactions with other ribosome components may occur, the N terminus being involved in protein-protein interactions and the C terminus containing possible RNA-binding sites []. This entry represents the alpha-beta domain found duplicated in ribosomal L6 proteins. This domain consists of two beta-sheets and one alpha-helix packed around single core [].; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 2HGJ_H 2HGQ_H 2HGU_H 1S1I_H 3O5H_I 3O58_I 3J16_F 3IZS_F 2V47_H 2WDJ_H ....
Probab=44.19 E-value=67 Score=20.03 Aligned_cols=46 Identities=26% Similarity=0.397 Sum_probs=30.0
Q ss_pred CCCeEEEEecCceEEEEeEEecccccCCceEEEEeeeeeEEEEEEECCCCCccCCeEEEEeCCEEEEEEe
Q 037294 76 KDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQFLRRFRLPENARIDQVKASTEYGVLTVTVP 145 (161)
Q Consensus 76 ~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~~GvL~I~~p 145 (161)
|+.++|++++ +.+++.|.+. ..++.||..+. ++...+++.+++...
T Consensus 2 P~gV~v~~~~-~~i~v~G~~g--------------------~l~~~~~~~v~---v~~~~~~~~~~~~~~ 47 (77)
T PF00347_consen 2 PEGVKVTIKG-NIITVKGPKG--------------------ELSRPIPPGVK---VEIKVEDNKITVSVL 47 (77)
T ss_dssp STTCEEEEET-TEEEEESSSS--------------------EEEEEETTTEE---EEEEEETTSEEEEEE
T ss_pred CCcEEEEEeC-cEEEEECCCE--------------------eEEEECCCCee---EEEEcCCCceEEEEC
Confidence 5788999996 6999998742 24566775532 223356777766654
No 85
>KOG3413 consensus Mitochondrial matrix protein frataxin, involved in Fe/S protein biosynthesis [Inorganic ion transport and metabolism]
Probab=42.85 E-value=12 Score=27.55 Aligned_cols=24 Identities=25% Similarity=0.284 Sum_probs=18.5
Q ss_pred CCCCCccCCeEEEEeCCEEEEEEe
Q 037294 122 LPENARIDQVKASTEYGVLTVTVP 145 (161)
Q Consensus 122 LP~~vd~~~i~A~~~~GvL~I~~p 145 (161)
|-+.+..+.-.+.|.||||+|.++
T Consensus 65 l~e~~~~~~~Dv~y~~GVLTl~lg 88 (156)
T KOG3413|consen 65 LAEEVPGEGFDVDYADGVLTLKLG 88 (156)
T ss_pred HHhhcCccccccccccceEEEEec
Confidence 334555566778899999999997
No 86
>PF14814 UB2H: Bifunctional transglycosylase second domain; PDB: 3FWL_A 3VMA_A.
Probab=42.66 E-value=79 Score=20.62 Aligned_cols=42 Identities=17% Similarity=0.355 Sum_probs=26.4
Q ss_pred CCceEEEEeeeeeEEEEEEECCCCCccCC-eEEEEeCCEE-EEE
Q 037294 102 RSDTWHRVERSSGQFLRRFRLPENARIDQ-VKASTEYGVL-TVT 143 (161)
Q Consensus 102 ~~~~~~~~e~~~g~f~r~~~LP~~vd~~~-i~A~~~~GvL-~I~ 143 (161)
..+.|......+-=+.|.|.+|+...+.. +.-+|.+|-+ .|+
T Consensus 29 ~pG~y~~~g~~i~i~~R~F~F~Dg~e~~~~~~l~f~~~~V~~i~ 72 (85)
T PF14814_consen 29 RPGEYSRSGNRIEIYTRGFDFPDGQEPARRVRLTFSGGRVSSIQ 72 (85)
T ss_dssp STTEEEEETTEEEEEE--EEETTCEE--EEEEEEEETTEEEEEE
T ss_pred CCeEEEEECCEEEEEECCCCCCCCCccCEEEEEEECCCEEEEEE
Confidence 33556655555556899999999987665 8888888844 354
No 87
>PRK14290 chaperone protein DnaJ; Provisional
Probab=42.16 E-value=1.7e+02 Score=24.49 Aligned_cols=29 Identities=10% Similarity=0.204 Sum_probs=19.7
Q ss_pred EEECCCCCccCCeEEEEeCCEEEEEEeCc
Q 037294 119 RFRLPENARIDQVKASTEYGVLTVTVPKV 147 (161)
Q Consensus 119 ~~~LP~~vd~~~i~A~~~~GvL~I~~pK~ 147 (161)
.|.|.+.+--..+.-..-+|.++|.+|..
T Consensus 277 ~Isl~eAl~G~~~~I~~~~g~i~V~Ip~g 305 (365)
T PRK14290 277 KINFPQAALGGEIEIKLFREKYNLKIPEG 305 (365)
T ss_pred EeCHHHHhCCCEEEEEcCCceEEEEECCc
Confidence 45555555555566667778899999854
No 88
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=41.57 E-value=34 Score=23.64 Aligned_cols=18 Identities=28% Similarity=0.523 Sum_probs=15.5
Q ss_pred CCeEEEEeCCEEEEEEeC
Q 037294 129 DQVKASTEYGVLTVTVPK 146 (161)
Q Consensus 129 ~~i~A~~~~GvL~I~~pK 146 (161)
..+.+.+.+|||+|+++.
T Consensus 30 ~d~d~e~~~gVLti~~~~ 47 (109)
T PF01491_consen 30 ADIDVERSGGVLTIEFPD 47 (109)
T ss_dssp STEEEEEETTEEEEEETT
T ss_pred CceEEEccCCEEEEEECC
Confidence 468899999999999964
No 89
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=41.03 E-value=27 Score=24.09 Aligned_cols=18 Identities=28% Similarity=0.368 Sum_probs=15.1
Q ss_pred CeEEEEeCCEEEEEEeCc
Q 037294 130 QVKASTEYGVLTVTVPKV 147 (161)
Q Consensus 130 ~i~A~~~~GvL~I~~pK~ 147 (161)
.+.+.+.+|||+|+++..
T Consensus 28 d~D~e~~~gVLti~f~~~ 45 (105)
T PRK00446 28 DIDCERNGGVLTLTFENG 45 (105)
T ss_pred CeeeeccCCEEEEEECCC
Confidence 377889999999999853
No 90
>TIGR03421 FeS_CyaY iron donor protein CyaY. Members of this protein family are the iron-sulfur cluster (FeS) metabolism protein CyaY, a homolog of eukaryotic frataxin. ISC is one of several bacterial systems for FeS assembly; we find by Partial Phylogenetic Profiling vs. the ISC system that CyaY most like work with the ISC system for FeS cluster biosynthesis. A study of of cyaY mutants in Salmonella enterica bears this out. Although the trusted cutoff is set low enough to include eukaryotic frataxin sequences, a narrower, exception-type model (TIGR03421) identifies identifies members of that specific set.
Probab=40.41 E-value=27 Score=23.97 Aligned_cols=17 Identities=29% Similarity=0.436 Sum_probs=14.6
Q ss_pred CeEEEEeCCEEEEEEeC
Q 037294 130 QVKASTEYGVLTVTVPK 146 (161)
Q Consensus 130 ~i~A~~~~GvL~I~~pK 146 (161)
.+.+.+.+|||+|+++.
T Consensus 26 d~D~e~~~gVLti~f~~ 42 (102)
T TIGR03421 26 DIDCERAGGVLTLTFEN 42 (102)
T ss_pred CeeeecCCCEEEEEECC
Confidence 47888899999999984
No 91
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=37.85 E-value=76 Score=20.40 Aligned_cols=30 Identities=13% Similarity=0.308 Sum_probs=24.8
Q ss_pred EEEEEECCCCCccCCeEEEEeCCEEEEEEe
Q 037294 116 FLRRFRLPENARIDQVKASTEYGVLTVTVP 145 (161)
Q Consensus 116 f~r~~~LP~~vd~~~i~A~~~~GvL~I~~p 145 (161)
..-.|.+|.++..++++.+++..-|.|.+.
T Consensus 10 V~v~i~~p~~~~~~dv~v~~~~~~l~v~~~ 39 (85)
T cd06493 10 LTLTIRLPEDTTKEDIRIKFLPDHISIALK 39 (85)
T ss_pred EEEEEECCCCCChhhEEEEEecCEEEEEeC
Confidence 455778999999999999998888888773
No 92
>KOG3260 consensus Calcyclin-binding protein CacyBP [Signal transduction mechanisms]
Probab=36.84 E-value=1.7e+02 Score=22.61 Aligned_cols=78 Identities=13% Similarity=0.200 Sum_probs=54.0
Q ss_pred eeEEECCCeEEEEEEcCCCcCCCeEEEEecCceEEEEeEEecccccCCceEEEEeeeeeEEEEE-EECCCCCccCCeEEE
Q 037294 56 IDWRETPEAHIFKADLPGMRKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQFLRR-FRLPENARIDQVKAS 134 (161)
Q Consensus 56 ~dv~e~~~~~~i~~~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~-~~LP~~vd~~~i~A~ 134 (161)
+-|-..++.+.+.+.|-|+..++|+|.++. +.|-+.-.--. +.+ |.-. =.|-.+|+++..+-.
T Consensus 77 ygWDQs~kfVK~yItL~GV~eenVqv~ftp-~Sldl~v~dlq-----GK~----------y~~~vnnLlk~I~vEks~~k 140 (224)
T KOG3260|consen 77 YGWDQSNKFVKMYITLEGVDEENVQVEFTP-MSLDLKVHDLQ-----GKN----------YRMIVNNLLKPISVEKSSKK 140 (224)
T ss_pred cCccccCCeeEEEEEeecccccceeEEecc-cceeeeeeecC-----Ccc----------eeeehhhhccccChhhcccc
Confidence 446677788889999999999999999996 57766643211 111 2111 135567888988888
Q ss_pred EeCCEEEEEEeCcCC
Q 037294 135 TEYGVLTVTVPKVIA 149 (161)
Q Consensus 135 ~~~GvL~I~~pK~~~ 149 (161)
.+-....|.+.|.+.
T Consensus 141 vKtd~v~I~~kkVe~ 155 (224)
T KOG3260|consen 141 VKTDTVLILCKKVEN 155 (224)
T ss_pred cccceEEEeehhhhc
Confidence 888888888855443
No 93
>PRK11198 LysM domain/BON superfamily protein; Provisional
Probab=36.83 E-value=47 Score=24.09 Aligned_cols=26 Identities=27% Similarity=0.622 Sum_probs=22.0
Q ss_pred CCCcCCCeEEEEecCceEEEEeEEecc
Q 037294 72 PGMRKDEVKVEIEEGNVLRISGERRKE 98 (161)
Q Consensus 72 PG~~~edI~v~v~~~~~L~I~g~~~~~ 98 (161)
.|+...+|+|.+++| .++++|.-...
T Consensus 38 ~~~~~~~i~V~v~~G-~v~l~G~v~s~ 63 (147)
T PRK11198 38 QGLGDADVNVQVEDG-KATVSGDAASQ 63 (147)
T ss_pred cCCCcCCceEEEeCC-EEEEEEEeCCH
Confidence 578888899999986 99999988654
No 94
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=35.43 E-value=1.7e+02 Score=22.29 Aligned_cols=39 Identities=21% Similarity=0.266 Sum_probs=29.4
Q ss_pred CCCeEEEEEEcCCCcCCCeEEEEecCceEEEEeEEecccc
Q 037294 61 TPEAHIFKADLPGMRKDEVKVEIEEGNVLRISGERRKEVE 100 (161)
Q Consensus 61 ~~~~~~i~~~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~ 100 (161)
.++.|+=++.||--..+-.++++.+| +|.|.-++..+..
T Consensus 134 ~~~~~~krv~L~~~~~e~~~~t~nNg-ILEIri~~~~~~~ 172 (177)
T PF05455_consen 134 VGEKYLKRVALPWPDPEITSATFNNG-ILEIRIRRTEESS 172 (177)
T ss_pred cCCceEeeEecCCCccceeeEEEeCc-eEEEEEeecCCCC
Confidence 34456667888865677889999986 9999988876543
No 95
>PF03983 SHD1: SLA1 homology domain 1, SHD1 ; InterPro: IPR007131 The SLA1 homology domain is found in the cytoskeleton assembly control protein SLA1, which is responsible for the correct formation of the actin cytoskeleton.; GO: 0008092 cytoskeletal protein binding, 0030674 protein binding, bridging, 0042802 identical protein binding, 0043130 ubiquitin binding; PDB: 2HBP_A.
Probab=33.40 E-value=50 Score=21.15 Aligned_cols=37 Identities=14% Similarity=0.371 Sum_probs=26.6
Q ss_pred eeEEECCCeEEEEEEcCCCcCCCeEEEEecCceEEEE
Q 037294 56 IDWRETPEAHIFKADLPGMRKDEVKVEIEEGNVLRIS 92 (161)
Q Consensus 56 ~dv~e~~~~~~i~~~lPG~~~edI~v~v~~~~~L~I~ 92 (161)
-.|....+.|.|.+.+=|+....|.+.-.+|..+.|-
T Consensus 13 RtWtD~tG~f~VeA~fv~~~dgkV~L~k~nG~~i~VP 49 (70)
T PF03983_consen 13 RTWTDRTGKFKVEAEFVGVNDGKVHLHKTNGVKIAVP 49 (70)
T ss_dssp EEEEBSSS--EEEEEEEEEETTEEEEE-TTS-EEEEE
T ss_pred eEEEeCCCCEEEEEEEEEeeCCEEEEEecCCeEEEeE
Confidence 3567778899999999999999999999887444443
No 96
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=32.41 E-value=2e+02 Score=22.57 Aligned_cols=44 Identities=23% Similarity=0.255 Sum_probs=25.9
Q ss_pred EEEecCceEEEEeEEeccccc-CCceEE------EEeeeeeEEEEEEECCCC
Q 037294 81 VEIEEGNVLRISGERRKEVEE-RSDTWH------RVERSSGQFLRRFRLPEN 125 (161)
Q Consensus 81 v~v~~~~~L~I~g~~~~~~~~-~~~~~~------~~e~~~g~f~r~~~LP~~ 125 (161)
|.+++| .|+|++.+...... ....+. .....+|.|+-+++||..
T Consensus 60 v~v~~G-~L~i~a~~~~~~~~~~~~~~tsg~i~t~~~~~YG~~EaR~K~p~~ 110 (258)
T cd02178 60 VSVEDG-NLVLSATRHPGTELGNGYKVTTGSITSKEKVKYGYFEARAKASNL 110 (258)
T ss_pred eEEECC-EEEEEEEcCCCCcCCCCccEEEEEEEeCCceEEEEEEEEEEcCCC
Confidence 456676 79999887643110 111111 113467889999999853
No 97
>TIGR03422 mito_frataxin frataxin. Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately.
Probab=32.38 E-value=35 Score=23.18 Aligned_cols=15 Identities=33% Similarity=0.554 Sum_probs=12.7
Q ss_pred EEEEeCCEEEEEEeC
Q 037294 132 KASTEYGVLTVTVPK 146 (161)
Q Consensus 132 ~A~~~~GvL~I~~pK 146 (161)
.+.+.+|||+|+++.
T Consensus 30 D~e~~~gVLti~~~~ 44 (97)
T TIGR03422 30 DVEYSSGVLTLELPS 44 (97)
T ss_pred ccccCCCEEEEEECC
Confidence 677899999999964
No 98
>PF07873 YabP: YabP family; InterPro: IPR022476 Members of this protein family are the YabP and YqfC proteins of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. ; PDB: 2KYI_B 3IPF_B 2KS0_A.
Probab=32.26 E-value=41 Score=20.90 Aligned_cols=23 Identities=26% Similarity=0.560 Sum_probs=18.9
Q ss_pred CCcCCCeEEEEecCceEEEEeEEe
Q 037294 73 GMRKDEVKVEIEEGNVLRISGERR 96 (161)
Q Consensus 73 G~~~edI~v~v~~~~~L~I~g~~~ 96 (161)
-|+.+.|.|....| .|.|+|+.=
T Consensus 22 ~f~~~~I~l~t~~g-~l~I~G~~L 44 (66)
T PF07873_consen 22 SFDDEEIRLNTKKG-KLTIKGEGL 44 (66)
T ss_dssp EEETTEEEEEETTE-EEEEEEEEE
T ss_pred EECCCEEEEEeCCE-EEEEECceE
Confidence 46788999999876 899999864
No 99
>KOG3247 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.71 E-value=26 Score=30.20 Aligned_cols=77 Identities=17% Similarity=0.189 Sum_probs=52.2
Q ss_pred cCceeeEEECCCeEEEEEEcCCCcCCCeEEEEecCceEEEEeEEecccccCCceEEEEeeeeeEEEEEEECCCCC-ccCC
Q 037294 52 ANTRIDWRETPEAHIFKADLPGMRKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQFLRRFRLPENA-RIDQ 130 (161)
Q Consensus 52 ~~p~~dv~e~~~~~~i~~~lPG~~~edI~v~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~v-d~~~ 130 (161)
.+|...+..+++...|.+..|-.+...+.+...+ +....++. .|.-+..+|..+ +...
T Consensus 2 ltp~f~itqdee~~~L~I~~p~~~a~~le~~a~~-nm~~f~~~--------------------pyflrl~~p~~~~~d~~ 60 (466)
T KOG3247|consen 2 LTPQFAITQDEEFCTLIIPRPLNQASKLEIDAAA-NMASFSAG--------------------PYFLRLAGPGMVEDDAR 60 (466)
T ss_pred CCceeeeeecCceEEEEeeccccchhccchhhHh-hhhhhccc--------------------hhHHhhcCcchhhhhcc
Confidence 3678889999999999999997777777777765 44444422 233445566554 3333
Q ss_pred eEEEE--eCCEEEEEEeCcCC
Q 037294 131 VKAST--EYGVLTVTVPKVIA 149 (161)
Q Consensus 131 i~A~~--~~GvL~I~~pK~~~ 149 (161)
-.|+| ++|-..|.+||..+
T Consensus 61 ~n~s~d~kd~~~~vK~~K~~~ 81 (466)
T KOG3247|consen 61 PNASYDAKDGYAHVKVPKFHP 81 (466)
T ss_pred ccCccccccceeEEeecCCCc
Confidence 44444 77999999999654
No 100
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=30.24 E-value=60 Score=20.19 Aligned_cols=29 Identities=14% Similarity=0.361 Sum_probs=20.6
Q ss_pred CeEEEEEEcCCCcCCCe-EEEEecCceEEE
Q 037294 63 EAHIFKADLPGMRKDEV-KVEIEEGNVLRI 91 (161)
Q Consensus 63 ~~~~i~~~lPG~~~edI-~v~v~~~~~L~I 91 (161)
+.|.|.+..+|+.+... .|.+..+....+
T Consensus 48 g~Y~l~v~~~g~~~~~~~~v~v~~~~~~~~ 77 (82)
T PF13620_consen 48 GTYTLRVSAPGYQPQTQENVTVTAGQTTTV 77 (82)
T ss_dssp EEEEEEEEBTTEE-EEEEEEEESSSSEEE-
T ss_pred EeEEEEEEECCcceEEEEEEEEeCCCEEEE
Confidence 67999999999988887 577775544444
No 101
>cd08023 GH16_laminarinase_like Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=30.13 E-value=2.5e+02 Score=21.43 Aligned_cols=50 Identities=20% Similarity=0.310 Sum_probs=28.4
Q ss_pred CCcCCCeEEEEecCceEEEEeEEecccccCC-----ceEEE---EeeeeeEEEEEEECCCC
Q 037294 73 GMRKDEVKVEIEEGNVLRISGERRKEVEERS-----DTWHR---VERSSGQFLRRFRLPEN 125 (161)
Q Consensus 73 G~~~edI~v~v~~~~~L~I~g~~~~~~~~~~-----~~~~~---~e~~~g~f~r~~~LP~~ 125 (161)
-..++++.| ++| .|+|++.+........ +.+.. ....+|.|+-++++|..
T Consensus 34 ~~~~~nv~v--~~G-~L~i~~~~~~~~~~~~~~~~sg~i~S~~~~~~~yG~~E~r~k~~~~ 91 (235)
T cd08023 34 TYRPENAYV--EDG-NLVITARKEPDKGGDGYPYTSGRITTKGKFSFTYGRVEARAKLPKG 91 (235)
T ss_pred eCCCCCeEE--ECC-EEEEEEEECCCCCCCcccEEEEEEEECCCcceeCCEEEEEEEccCC
Confidence 345666554 466 8999988754321111 12221 13356788888888854
No 102
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=29.57 E-value=1.9e+02 Score=21.99 Aligned_cols=48 Identities=15% Similarity=0.173 Sum_probs=26.2
Q ss_pred cCCCeEEEEecCceEEEEeEEecccc--cCCceEEE-EeeeeeEEEEEEECCCC
Q 037294 75 RKDEVKVEIEEGNVLRISGERRKEVE--ERSDTWHR-VERSSGQFLRRFRLPEN 125 (161)
Q Consensus 75 ~~edI~v~v~~~~~L~I~g~~~~~~~--~~~~~~~~-~e~~~g~f~r~~~LP~~ 125 (161)
++++++|. +| .|.|++.+..... -..+.+.. ....+|.|+-++++|..
T Consensus 30 ~~~nv~v~--~g-~L~l~~~~~~~~~~~~tsg~i~S~~~f~yG~~ear~k~~~~ 80 (212)
T cd02175 30 SADNVEFS--DG-GLALTLTNDTYGEKPYACGEYRTRGFYGYGRYEVRMKPAKG 80 (212)
T ss_pred ccccEEEE--CC-eEEEEEeCCcCCCCccccceEEECceEEeeEEEEEEEcCCC
Confidence 35565544 55 7888876653210 01122221 12457889999998853
No 103
>PRK14299 chaperone protein DnaJ; Provisional
Probab=29.25 E-value=3.1e+02 Score=22.16 Aligned_cols=29 Identities=24% Similarity=0.271 Sum_probs=17.5
Q ss_pred EEECC--CCCccCCeEEEEeCCEEEEEEeCc
Q 037294 119 RFRLP--ENARIDQVKASTEYGVLTVTVPKV 147 (161)
Q Consensus 119 ~~~LP--~~vd~~~i~A~~~~GvL~I~~pK~ 147 (161)
.+.|+ +-+--..+....-+|.++|++|..
T Consensus 206 ~~~Isl~eAl~G~~~~v~tldG~~~v~ip~~ 236 (291)
T PRK14299 206 TVDVPAPIAVVGGKVRVMTLDGPVEVTIPPR 236 (291)
T ss_pred EEecCHHHHhCCCEEEEECCCCCEEEEeCCC
Confidence 44444 334444555666678888888854
No 104
>COG0097 RplF Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]
Probab=28.31 E-value=2.5e+02 Score=21.35 Aligned_cols=20 Identities=30% Similarity=0.459 Sum_probs=16.8
Q ss_pred cCCCeEEEEecCceEEEEeEE
Q 037294 75 RKDEVKVEIEEGNVLRISGER 95 (161)
Q Consensus 75 ~~edI~v~v~~~~~L~I~g~~ 95 (161)
.|++++|++++ +.++++|.+
T Consensus 11 ~P~gV~V~i~~-~~v~vkGpk 30 (178)
T COG0097 11 IPAGVTVSIEG-QVVTVKGPK 30 (178)
T ss_pred cCCCeEEEEec-cEEEEECCC
Confidence 48899999995 699999875
No 105
>TIGR02856 spore_yqfC sporulation protein YqfC. This small protein, designated YqfC in Bacillus subtilis, is both restricted to and universal in sporulating species of the Firmcutes, such as Bacillus subtilis and Clostridium perfringens. It is part of the sigma(E)-controlled regulon, and its mutation leads to a sporulation defect.
Probab=27.50 E-value=48 Score=21.90 Aligned_cols=42 Identities=24% Similarity=0.279 Sum_probs=28.3
Q ss_pred CceeeEEECCCeEEEE--EEcCCCcCCCeEEEEecCceEEEEeEEe
Q 037294 53 NTRIDWRETPEAHIFK--ADLPGMRKDEVKVEIEEGNVLRISGERR 96 (161)
Q Consensus 53 ~p~~dv~e~~~~~~i~--~~lPG~~~edI~v~v~~~~~L~I~g~~~ 96 (161)
.|.+.+... .+..|+ -.+=-|+.+.|.++...| .|.|+|+.=
T Consensus 19 ~p~itl~gr-~~~~Ien~k~I~~y~~~~I~l~t~~G-~l~I~G~~L 62 (85)
T TIGR02856 19 LPRITLIGN-EHIYIENHRGLVVFSPEEVKLNSTNG-KITIEGKNF 62 (85)
T ss_pred CCEEEEECC-cEEEEECccceEEECCCEEEEEcCce-EEEEEcccE
Confidence 466655443 333332 344567899999999986 999999863
No 106
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.15 E-value=1.7e+02 Score=19.85 Aligned_cols=34 Identities=18% Similarity=0.284 Sum_probs=26.8
Q ss_pred eeEEECCCeEEEEEEcCCCcCCCeEEEEecCceEEEEeE
Q 037294 56 IDWRETPEAHIFKADLPGMRKDEVKVEIEEGNVLRISGE 94 (161)
Q Consensus 56 ~dv~e~~~~~~i~~~lPG~~~edI~v~v~~~~~L~I~g~ 94 (161)
++|.+.+| .|....||.+ .|+|+.++ +.|.|.+.
T Consensus 26 ~~v~~eGD--~ivas~pgis--~ieik~E~-kkL~v~t~ 59 (96)
T COG4004 26 WTVSEEGD--RIVASSPGIS--RIEIKPEN-KKLLVNTT 59 (96)
T ss_pred eeEeeccc--EEEEecCCce--EEEEeccc-ceEEEecc
Confidence 67888888 7778899975 57888887 48999873
No 107
>PF08845 SymE_toxin: Toxin SymE, type I toxin-antitoxin system; InterPro: IPR014944 This entry represents a SOS-induced gene whose product shows homology to the antitoxin MazE (SymE), the coding region contains a cis-encoded antisense RNA. The small antisense RNA and the gene have the all the hallmarks of a toxin-antitoxin module. The synthesis of the SymE is tightly repressed at multiple levels; at the transcriptional level by the LexA repressor, at the level of mRNA stability and translation by the SymR RNA and at the level of protein stability by the Lon protease. SymE co-purifies with ribosomes and overproduction of the protein leads to cell growth inhibition, decreased protein synthesis and increased RNA degradation. These properties are shared with several RNA endonuclease toxins of toxin-antitoxin modules. It seems probable that the SymE protein represents an evolutionary derivative of a toxin containing the AbrB fold, whose representatives are typically antitoxins. The SymE promoted cleavage of RNA cleavage may be important for the recycling of RNAs damaged under SOS-inducing conditions []. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0016070 RNA metabolic process, 0005737 cytoplasm
Probab=27.01 E-value=91 Score=19.00 Aligned_cols=23 Identities=35% Similarity=0.497 Sum_probs=17.7
Q ss_pred EEcCCCcC-CCeEEEEecCceEEEE
Q 037294 69 ADLPGMRK-DEVKVEIEEGNVLRIS 92 (161)
Q Consensus 69 ~~lPG~~~-edI~v~v~~~~~L~I~ 92 (161)
++-.||.. +.|+|.+.+| .|+|+
T Consensus 33 L~~aGF~~G~~v~V~v~~g-~lvIt 56 (57)
T PF08845_consen 33 LEEAGFTIGDPVKVRVMPG-CLVIT 56 (57)
T ss_pred hHHhCCCCCCEEEEEEECC-EEEEe
Confidence 35568855 6899999986 88886
No 108
>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold. It is found at the N terminus of many but not all myosins. The function of this domain is unknown.; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 2EC6_A 2W4H_M 1O1E_P 1O1D_D 1O18_A 1O1C_P 1O1B_D 1O1F_A 2W4A_M 2W4G_M ....
Probab=26.52 E-value=84 Score=17.64 Aligned_cols=24 Identities=21% Similarity=0.417 Sum_probs=13.8
Q ss_pred EEcCCCcCCCeEEEEecCceEEEE
Q 037294 69 ADLPGMRKDEVKVEIEEGNVLRIS 92 (161)
Q Consensus 69 ~~lPG~~~edI~v~v~~~~~L~I~ 92 (161)
..+-..+-+.+.|...+|+.++|+
T Consensus 16 g~I~~~~g~~vtV~~~~G~~~tv~ 39 (42)
T PF02736_consen 16 GEIIEEEGDKVTVKTEDGKEVTVK 39 (42)
T ss_dssp EEEEEEESSEEEEEETTTEEEEEE
T ss_pred EEEEEEcCCEEEEEECCCCEEEeC
Confidence 333355556677777666555554
No 109
>TIGR02892 spore_yabP sporulation protein YabP. Members of this protein family are the YabP protein of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. In Bacillus subtilis, a yabP single mutant appears to sporulate and germinate normally (PubMed:11283287), but is in an operon with yabQ (essential for formation of the spore cortex), it near-universal among endospore-forming bacteria, and is found nowhere else. It is likely, therefore, that YabP does have a function in sporulation or germination, one that is either unappreciated or partially redundant with that of another protein.
Probab=26.33 E-value=53 Score=21.79 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=17.4
Q ss_pred cCCCcCCCeEEEEecCceEEEEeEE
Q 037294 71 LPGMRKDEVKVEIEEGNVLRISGER 95 (161)
Q Consensus 71 lPG~~~edI~v~v~~~~~L~I~g~~ 95 (161)
+--|+.+.|.+....| .|+|+|+.
T Consensus 19 V~sfd~~~I~l~T~~G-~L~I~G~~ 42 (85)
T TIGR02892 19 VISFDDEEILLETVMG-FLTIKGQE 42 (85)
T ss_pred EEEECCCEEEEEeCcE-EEEEEcce
Confidence 3345777888888776 78888875
No 110
>PF06964 Alpha-L-AF_C: Alpha-L-arabinofuranosidase C-terminus; InterPro: IPR010720 This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (3.2.1.55 from EC). This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3FW6_A 3II1_A 3S2C_K 1QW9_A 1PZ3_B 1PZ2_B 1QW8_A 3UG4_A 3UG3_A 4ATW_B ....
Probab=25.90 E-value=1.3e+02 Score=22.01 Aligned_cols=27 Identities=33% Similarity=0.332 Sum_probs=19.6
Q ss_pred ECCCCCccCCeEEEEeCCEEEEEEeCc
Q 037294 121 RLPENARIDQVKASTEYGVLTVTVPKV 147 (161)
Q Consensus 121 ~LP~~vd~~~i~A~~~~GvL~I~~pK~ 147 (161)
.=|..|-+.........|-++++||+.
T Consensus 150 ~~p~~V~p~~~~~~~~~~~~~~~lp~~ 176 (177)
T PF06964_consen 150 ENPENVVPVTSTVSAEGGTFTYTLPPY 176 (177)
T ss_dssp SSTTSSEEEEEEEEEETTEEEEEE-SS
T ss_pred CCCCEEEEEEeeEEecCCEEEEEeCCC
Confidence 457777777666666799999999973
No 111
>PF13014 KH_3: KH domain
Probab=25.72 E-value=92 Score=17.18 Aligned_cols=21 Identities=19% Similarity=0.438 Sum_probs=11.9
Q ss_pred EEEEeCcCCCCCCeeEEeccC
Q 037294 141 TVTVPKVIADRPDVRAIEISG 161 (161)
Q Consensus 141 ~I~~pK~~~~~~~~~~I~I~~ 161 (161)
.|.+|+........+.|.|.|
T Consensus 23 ~I~i~~~~~~~~~~~~v~I~G 43 (43)
T PF13014_consen 23 KIQIPPENEPGSNERVVTITG 43 (43)
T ss_pred EEEECCccCCCCCceEEEEEC
Confidence 466676333344456777665
No 112
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....
Probab=25.53 E-value=76 Score=20.28 Aligned_cols=52 Identities=17% Similarity=0.324 Sum_probs=24.1
Q ss_pred EEcCCCcCCCeEEEEe----cCceEEEEeEEeccccc--CCceEEEEeeeeeEEEEEEECCCCCcc
Q 037294 69 ADLPGMRKDEVKVEIE----EGNVLRISGERRKEVEE--RSDTWHRVERSSGQFLRRFRLPENARI 128 (161)
Q Consensus 69 ~~lPG~~~edI~v~v~----~~~~L~I~g~~~~~~~~--~~~~~~~~e~~~g~f~r~~~LP~~vd~ 128 (161)
+.+|+++-+.++|++. .|..++|.|+--..... ..+..+ ..-.+.+|..++.
T Consensus 19 i~i~~l~g~~~~i~ip~~~~~g~~~~i~g~G~p~~~~~~~~GdL~--------v~~~V~~P~~ls~ 76 (81)
T PF01556_consen 19 ISIPTLDGKTIKIKIPPGTQPGQQLRIKGKGMPKPKGGGKRGDLI--------VKFEVEFPKKLSP 76 (81)
T ss_dssp EEEE-TTS-EEEEEETST-STT-EEEETTESEEESSSTTSBEEEE--------EEEEEE--SSTSH
T ss_pred EEEECCCCCEEEEeccCccCCCcEEeecCCCCCcCCCCCCcCCEE--------EEEEEECCCCCCH
Confidence 3445555566666643 34677777765422211 223333 3345778877764
No 113
>PF12624 Chorein_N: N-terminal region of Chorein, a TM vesicle-mediated sorter
Probab=25.32 E-value=62 Score=22.36 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=17.2
Q ss_pred CCCcCCCeEEEEecCceEEEEeE
Q 037294 72 PGMRKDEVKVEIEEGNVLRISGE 94 (161)
Q Consensus 72 PG~~~edI~v~v~~~~~L~I~g~ 94 (161)
-|++++++++.+-+| .+.++--
T Consensus 18 ~~l~~~ql~vsl~~G-~v~L~nl 39 (118)
T PF12624_consen 18 ENLDKDQLSVSLWNG-EVELRNL 39 (118)
T ss_pred hcCCHHHeeeeeccC-ceEEEcc
Confidence 578899999999877 6777643
No 114
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=25.17 E-value=3.5e+02 Score=21.46 Aligned_cols=66 Identities=15% Similarity=0.232 Sum_probs=34.9
Q ss_pred EEcCCCcCCCeEEEEe-cCceEEEEeEEecccccCCceEEEEeeeeeEEEEEEECCCCCccCCeEEEEeCCEEEEE
Q 037294 69 ADLPGMRKDEVKVEIE-EGNVLRISGERRKEVEERSDTWHRVERSSGQFLRRFRLPENARIDQVKASTEYGVLTVT 143 (161)
Q Consensus 69 ~~lPG~~~edI~v~v~-~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~~~LP~~vd~~~i~A~~~~GvL~I~ 143 (161)
-.|||+..+==.|+.. +++.|..... +...++.-.. .|..-|++.|...-|.|.|.. ..+|.+.|+
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d-------~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y-~g~~~~vl~ 81 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQD-------EPGEIYELSL-DGKVLRRIPLDGFGDYEGITY-LGNGRYVLS 81 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEET-------TTTEEEEEET-T--EEEEEE-SS-SSEEEEEE--STTEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEEC-------CCCEEEEEcC-CCCEEEEEeCCCCCCceeEEE-ECCCEEEEE
Confidence 4799998863236665 2244444321 2233444333 478889999988889998876 577777664
No 115
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=24.21 E-value=1.9e+02 Score=18.16 Aligned_cols=72 Identities=8% Similarity=0.062 Sum_probs=40.9
Q ss_pred ECCCeEEEEEEcCCCcCCCeEEEEecCceEEEEeEEe--cccccCCceEEEEeeeeeEEEEEEECCCC--CccCCeEEEE
Q 037294 60 ETPEAHIFKADLPGMRKDEVKVEIEEGNVLRISGERR--KEVEERSDTWHRVERSSGQFLRRFRLPEN--ARIDQVKAST 135 (161)
Q Consensus 60 e~~~~~~i~~~lPG~~~edI~v~v~~~~~L~I~g~~~--~~~~~~~~~~~~~e~~~g~f~r~~~LP~~--vd~~~i~A~~ 135 (161)
..++...|.-.+-|+.+.++.|....++. .+..... ......++.+. ..-.+.++.. -+....++..
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~-~~~~~~~~~~~~~~~~gt~~--------~~s~l~v~~~~~~~~~~y~C~v 81 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGK-ELTSGVTTTPPVPNSDGTYS--------VSSQLTVSPSDWNSGDTYTCVV 81 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCE-ECCCceeccccccCCCCCEE--------EEEEEEECHHHhCCCCCEEEEE
Confidence 35678888889999999999988884323 3332221 11112222222 1224455544 2666677777
Q ss_pred eCCEE
Q 037294 136 EYGVL 140 (161)
Q Consensus 136 ~~GvL 140 (161)
++.-|
T Consensus 82 ~h~~~ 86 (95)
T cd00098 82 THESL 86 (95)
T ss_pred EeCCC
Confidence 77655
No 116
>cd02182 GH16_Strep_laminarinase_like Streptomyces laminarinase-like, member of glycosyl hydrolase family 16. Proteins similar to Streptomyces sioyaensis beta-1,3-glucanase (laminarinase) present in Actinomycetales as well as Peziomycotina. Laminarinases belong to glycosyl hydrolase family 16 and hydrolyze the glycosidic bond of the 1,3-beta-linked glucan, a major component of fungal and plant cell walls and the structural and storage polysaccharides (laminarin) of marine macro-algae. Members of the GH16 family have a conserved jelly roll fold with an active site channel.
Probab=23.78 E-value=1.7e+02 Score=23.09 Aligned_cols=19 Identities=26% Similarity=0.457 Sum_probs=12.6
Q ss_pred CCCeEEEEe-cCceEEEEeEEec
Q 037294 76 KDEVKVEIE-EGNVLRISGERRK 97 (161)
Q Consensus 76 ~edI~v~v~-~~~~L~I~g~~~~ 97 (161)
++++. ++ +| .|+|++++..
T Consensus 45 ~~n~~--v~~dG-~L~I~a~~~~ 64 (259)
T cd02182 45 TANVQ--LSGNG-TLQITPLRDG 64 (259)
T ss_pred CcCEE--EcCCC-eEEEEEEecC
Confidence 45554 44 66 7999988753
No 117
>COG1965 CyaY Protein implicated in iron transport, frataxin homolog [Inorganic ion transport and metabolism]
Probab=23.37 E-value=82 Score=21.89 Aligned_cols=17 Identities=29% Similarity=0.376 Sum_probs=14.3
Q ss_pred eEEEEeCCEEEEEEeCc
Q 037294 131 VKASTEYGVLTVTVPKV 147 (161)
Q Consensus 131 i~A~~~~GvL~I~~pK~ 147 (161)
+.+.+.+|||+|+++..
T Consensus 30 ~D~d~qg~VlTl~f~ng 46 (106)
T COG1965 30 IDCEIQGGVLTLTFDNG 46 (106)
T ss_pred cceecCCCEEEEEECCC
Confidence 66778899999999865
No 118
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=22.58 E-value=2.2e+02 Score=18.30 Aligned_cols=25 Identities=8% Similarity=0.145 Sum_probs=21.7
Q ss_pred CCeEEEEEEcCCCcCCCeEEEEecC
Q 037294 62 PEAHIFKADLPGMRKDEVKVEIEEG 86 (161)
Q Consensus 62 ~~~~~i~~~lPG~~~edI~v~v~~~ 86 (161)
++...|.-.+-||-+.+|.|+...+
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~ 38 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRD 38 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEEC
Confidence 4678999999999999999998854
No 119
>cd02177 GH16_kappa_carrageenase Kappa-carrageenase, member of glycosyl hydrolase family 16. Kappa-carrageenase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of kappa-carrageenans, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Carrageenans are linear chains of galactose units linked by alternating D-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Depending on the position and number of sulfate ester modifications they are subdivided into kappa-, iota-, and lambda-carrageenases, kappa being modified once. Carrageenans form thermo-reversible gels widely used for industrial applications. Kappa-carrageenases exist in bacteria belonging to at least three phylogenetically distant branches, including pseudoalteromonas, planctomycetes, and baceroidetes. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to
Probab=22.43 E-value=4.2e+02 Score=21.34 Aligned_cols=44 Identities=16% Similarity=0.325 Sum_probs=24.1
Q ss_pred EEEEecCceEEEEeEEecccc---------cCCceEEE------EeeeeeEEEEEEECCC
Q 037294 80 KVEIEEGNVLRISGERRKEVE---------ERSDTWHR------VERSSGQFLRRFRLPE 124 (161)
Q Consensus 80 ~v~v~~~~~L~I~g~~~~~~~---------~~~~~~~~------~e~~~g~f~r~~~LP~ 124 (161)
.+.+.+| .|+|++.+..... .....|.. ....+|.|+-+++||.
T Consensus 45 Nv~v~dG-~L~i~a~~e~~~~~~~~~~~~~~~~~~ytSg~~~t~~~~~YG~~EaRik~~p 103 (269)
T cd02177 45 NVVISNG-ILELTMRRNANNTTFWDQQQVPDGPTYFTSGIFKSYAKGTYGYYEARIKGAD 103 (269)
T ss_pred ceEEeCC-EEEEEEEeccCCCcccccccccCCCCCEeeEEEEecCcceeeEEEEEEECCC
Confidence 3456777 7999988763211 01111111 1236788888888753
No 120
>PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases. This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A.
Probab=21.69 E-value=1.4e+02 Score=19.58 Aligned_cols=25 Identities=12% Similarity=0.046 Sum_probs=14.4
Q ss_pred ccCceeeEEECCCeEEEEEEcCCCc
Q 037294 51 LANTRIDWRETPEAHIFKADLPGMR 75 (161)
Q Consensus 51 ~~~p~~dv~e~~~~~~i~~~lPG~~ 75 (161)
...|.+.+.+.++.|+.++.||.-.
T Consensus 19 ~~~P~~~~~~~~~~~~c~v~LP~~~ 43 (90)
T PF03368_consen 19 NLKPEFEIEKIGSGFICTVILPINS 43 (90)
T ss_dssp -SS-EEEEEE--G-EEEEEE--TT-
T ss_pred cCCceEEEEEcCCcEEEEEECCCCC
Confidence 4568889999999999999999543
No 121
>PRK14284 chaperone protein DnaJ; Provisional
Probab=21.57 E-value=5e+02 Score=21.95 Aligned_cols=30 Identities=20% Similarity=0.155 Sum_probs=18.4
Q ss_pred EEECCCCCccCCeEEEE-e-CCEEEEEEeCcC
Q 037294 119 RFRLPENARIDQVKAST-E-YGVLTVTVPKVI 148 (161)
Q Consensus 119 ~~~LP~~vd~~~i~A~~-~-~GvL~I~~pK~~ 148 (161)
.|.|.+-+--..++... . ++.|+|++|+..
T Consensus 285 ~Isl~eAl~G~~~~v~tld~g~~i~v~Ip~g~ 316 (391)
T PRK14284 285 PIGFVDAALGMKKEIPTLLKEGTCRLTIPEGI 316 (391)
T ss_pred EecHHHHhCCCeEEEeecCCCcEEEEEECCcc
Confidence 44444555555556544 3 488999999653
No 122
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=20.43 E-value=2.3e+02 Score=17.66 Aligned_cols=24 Identities=8% Similarity=0.127 Sum_probs=21.1
Q ss_pred CCeEEEEEEcCCCcCCCeEEEEec
Q 037294 62 PEAHIFKADLPGMRKDEVKVEIEE 85 (161)
Q Consensus 62 ~~~~~i~~~lPG~~~edI~v~v~~ 85 (161)
++...|.-.+-||-+++|+|....
T Consensus 8 ~~~~~L~C~v~~f~P~~i~v~W~~ 31 (83)
T PF07654_consen 8 GGSVTLTCLVSGFYPKDITVTWLK 31 (83)
T ss_dssp TSEEEEEEEEEEEBSSTEEEEEEE
T ss_pred CCCEEEEEEEEEEECCCcEEEEEe
Confidence 677888889999999999999974
No 123
>PF14913 DPCD: DPCD protein family
Probab=20.38 E-value=1.3e+02 Score=23.13 Aligned_cols=43 Identities=26% Similarity=0.269 Sum_probs=31.9
Q ss_pred eeeEEECCCeEEEEEEcCCCcC-------CCeEEEEecCceEEEEeEEecc
Q 037294 55 RIDWRETPEAHIFKADLPGMRK-------DEVKVEIEEGNVLRISGERRKE 98 (161)
Q Consensus 55 ~~dv~e~~~~~~i~~~lPG~~~-------edI~v~v~~~~~L~I~g~~~~~ 98 (161)
.+-|..++..|.=++.+|.++. +.|+....+ |+|+|+-++..+
T Consensus 122 ~ivvRTtNKKYyKk~~IPDl~R~~l~l~~~~ls~~h~n-NTLIIsYkKP~~ 171 (194)
T PF14913_consen 122 CIVVRTTNKKYYKKFSIPDLDRCGLPLEQSALSFAHQN-NTLIISYKKPKE 171 (194)
T ss_pred EEEEECcCccceeEecCCcHHhhCCCcchhhceeeeec-CeEEEEecCcHH
Confidence 3556677788999999996533 466777776 799999888653
No 124
>PRK01379 cyaY frataxin-like protein; Provisional
Probab=20.33 E-value=96 Score=21.35 Aligned_cols=16 Identities=6% Similarity=0.202 Sum_probs=12.6
Q ss_pred CeEEEEeCCEEEEEEe
Q 037294 130 QVKASTEYGVLTVTVP 145 (161)
Q Consensus 130 ~i~A~~~~GvL~I~~p 145 (161)
.+.+.+.+|||+|++.
T Consensus 29 d~D~e~~~gVLtl~~~ 44 (103)
T PRK01379 29 SIDVDLQGDILNLDTD 44 (103)
T ss_pred ceeeeccCCEEEEEeC
Confidence 3677788999999864
No 125
>cd00413 Glyco_hydrolase_16 glycosyl hydrolase family 16. The O-Glycosyl hydrolases are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A glycosyl hydrolase classification system based on sequence similarity has led to the definition of more than 95 different families inlcuding glycosyl hydrolase family 16. Family 16 includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=20.14 E-value=3.6e+02 Score=19.90 Aligned_cols=49 Identities=20% Similarity=0.247 Sum_probs=25.2
Q ss_pred cCCCeEEEEecCceEEEEeEEecc-cccCCceEE--EEeeeeeEEEEEEECCCC
Q 037294 75 RKDEVKVEIEEGNVLRISGERRKE-VEERSDTWH--RVERSSGQFLRRFRLPEN 125 (161)
Q Consensus 75 ~~edI~v~v~~~~~L~I~g~~~~~-~~~~~~~~~--~~e~~~g~f~r~~~LP~~ 125 (161)
.++++.+.= +| .|.|++.+... ..-..+.+. .....+|.|+-++++|..
T Consensus 28 ~~~nv~~~~-~G-~L~l~~~~~~~~~~~~sg~i~s~~~~~~yG~~ear~k~~~~ 79 (210)
T cd00413 28 SPNNVYVEN-DG-GLTLRTDRDQTDGPYSSAEIDSQKNNYTYGYYEARAKLAGG 79 (210)
T ss_pred CccCEEEeC-CC-eEEEEEEecCCCCceEeEEEEeCcceEeeEEEEEEEEcCCC
Confidence 445544321 25 67777765432 000111111 223456889889999875
Done!