RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 037294
(161 letters)
>gnl|CDD|107229 cd06472, ACD_ScHsp26_like, Alpha crystallin domain (ACD) found in
Saccharomyces cerevisiae (Sc) small heat shock protein
(Hsp)26 and similar proteins. sHsps are molecular
chaperones that suppress protein aggregation and protect
against cell stress, and are generally active as large
oligomers consisting of multiple subunits. ScHsp26 is
temperature-regulated, it switches from an inactive to a
chaperone-active form upon elevation in temperature. It
associates into large 24-mers storage forms which upon
heat shock disassociate into dimers. These dimers
initiate the interaction with non-native substrate
proteins and re-assemble into large globular assemblies
having one monomer of substrate bound per dimer. This
group also contains Arabidopsis thaliana (Ath) Hsp15.7,
a peroxisomal matrix protein which can complement the
morphological phenotype of S. cerevisiae mutants
deficient in Hsps26. AthHsp15.7 is minimally expressed
under normal conditions and is strongly induced by heat
and oxidative stress. Also belonging to this group is
wheat HSP16.9 which differs in quaternary structure from
the shell-type particles of ScHsp26, it assembles as a
dodecameric double disc, with each disc organized as a
trimer of dimers.
Length = 92
Score = 160 bits (407), Expect = 4e-52
Identities = 67/92 (72%), Positives = 83/92 (90%)
Query: 55 RIDWRETPEAHIFKADLPGMRKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSG 114
R+DW+ETPEAH+FKAD+PG++K++VKVE+E+G VLRISGER+KE E++ D WHRVERSSG
Sbjct: 1 RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSG 60
Query: 115 QFLRRFRLPENARIDQVKASTEYGVLTVTVPK 146
+F+RRFRLPENA D+VKA E GVLTVTVPK
Sbjct: 61 RFVRRFRLPENADADEVKAFLENGVLTVTVPK 92
>gnl|CDD|215655 pfam00011, HSP20, Hsp20/alpha crystallin family.
Length = 101
Score = 121 bits (305), Expect = 2e-36
Identities = 45/104 (43%), Positives = 61/104 (58%), Gaps = 3/104 (2%)
Query: 57 DWRETPEAHIFKADLPGMRKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQF 116
D +E +A + K D+PG + +E+KV++E+ VL + EE D R ERS F
Sbjct: 1 DIKEDKDAFVVKLDVPGFKPEELKVKVEDNRVLVKGKHEK---EEEDDHGLRSERSYRSF 57
Query: 117 LRRFRLPENARIDQVKASTEYGVLTVTVPKVIADRPDVRAIEIS 160
R+F LPENA D+VKAS + GVLTVTVPK+ R I+I
Sbjct: 58 SRKFVLPENADPDKVKASLKDGVLTVTVPKLEPPEKKPRRIQIQ 101
>gnl|CDD|107221 cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of
alpha-crystallin-type small(s) heat shock proteins
(Hsps). sHsps are small stress induced proteins with
monomeric masses between 12 -43 kDa, whose common
feature is the Alpha-crystallin domain (ACD). sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps.
Length = 88
Score = 106 bits (267), Expect = 7e-31
Identities = 48/90 (53%), Positives = 65/90 (72%), Gaps = 2/90 (2%)
Query: 57 DWRETPEAHIFKADLPGMRKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQF 116
D ET +A++ +ADLPG +K+++KVE+E VL ISGER +E EE + + R ERS G F
Sbjct: 1 DVYETDDAYVVEADLPGFKKEDIKVEVE-DGVLTISGEREEEEEEE-ENYLRRERSYGSF 58
Query: 117 LRRFRLPENARIDQVKASTEYGVLTVTVPK 146
R FRLPE+ D++KAS E GVLT+T+PK
Sbjct: 59 SRSFRLPEDVDPDKIKASLENGVLTITLPK 88
>gnl|CDD|223149 COG0071, IbpA, Molecular chaperone (small heat shock protein)
[Posttranslational modification, protein turnover,
chaperones].
Length = 146
Score = 96.7 bits (241), Expect = 2e-26
Identities = 41/105 (39%), Positives = 64/105 (60%), Gaps = 1/105 (0%)
Query: 56 IDWRETPEAHIFKADLPGMRKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQ 115
+D ET + + A+LPG+ K+++++ +E N L I GER +E EE + + R ER+ G+
Sbjct: 43 VDIEETDDEYRITAELPGVDKEDIEITVEG-NTLTIRGEREEEEEEEEEGYLRRERAYGE 101
Query: 116 FLRRFRLPENARIDQVKASTEYGVLTVTVPKVIADRPDVRAIEIS 160
F R FRLPE + +KA + G+LTVT+PK + + IEI
Sbjct: 102 FERTFRLPEKVDPEVIKAKYKNGLLTVTLPKAEPEEKKPKRIEIE 146
>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the
alpha-crystallin domain (ACD) of alpha-crystallin-type
small heat shock proteins (sHsps) and a similar domain
found in p23-like proteins. sHsps are small stress
induced proteins with monomeric masses between 12 -43
kDa, whose common feature is this ACD. sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps. p23 is a cochaperone of the Hsp90 chaperoning
pathway. It binds Hsp90 and participates in the folding
of a number of Hsp90 clients including the progesterone
receptor. p23 also has a passive chaperoning activity.
p23 in addition may act as the cytosolic prostaglandin
E2 synthase. Included in this family is the p23-like
C-terminal CHORD-SGT1 (CS) domain of suppressor of G2
allele of Skp1 (Sgt1) and the p23-like domains of human
butyrate-induced transcript 1 (hB-ind1), NUD (nuclear
distribution) C, Melusin, and NAD(P)H cytochrome b5
(NCB5) oxidoreductase (OR).
Length = 80
Score = 83.4 bits (207), Expect = 7e-22
Identities = 40/89 (44%), Positives = 58/89 (65%), Gaps = 9/89 (10%)
Query: 58 WRETPEAHIFKADLPGMRKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQFL 117
W +T + + DLPG++K+++KVE+E+ NVL ISG+R +E E ERS G+F
Sbjct: 1 WYQTDDEVVVTVDLPGVKKEDIKVEVED-NVLTISGKREEEEE--------RERSYGEFE 51
Query: 118 RRFRLPENARIDQVKASTEYGVLTVTVPK 146
R F LPE+ ++ KAS E GVL +T+PK
Sbjct: 52 RSFELPEDVDPEKSKASLENGVLEITLPK 80
>gnl|CDD|107228 cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an
alpha crystallin domain (ACD) similar to Lactobacillus
plantarum (Lp) small heat shock proteins (sHsp) HSP
18.5, HSP 18.55 and HSP 19.3. sHsps are molecular
chaperones that suppress protein aggregation and protect
against cell stress, and are generally active as large
oligomers consisting of multiple subunits. Transcription
of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is
regulated by a variety of stresses including heat, cold
and ethanol. Early growing L. plantarum cells contain
elevated levels of these mRNAs which rapidly fall of as
the cells enter stationary phase. Also belonging to this
group is Bifidobacterium breve (Bb) HSP20 and Oenococcus
oenis (syn. Leuconostoc oenos) (Oo) HSP18.
Transcription of the gene encoding BbHSP20 is strongly
induced following heat or osmotic shock, and that of the
gene encoding OoHSP18 following heat, ethanol or acid
shock. OoHSP18 is peripherally associated with the
cytoplasmic membrane.
Length = 93
Score = 80.6 bits (200), Expect = 1e-20
Identities = 36/94 (38%), Positives = 59/94 (62%), Gaps = 4/94 (4%)
Query: 55 RIDWRETPEAHIFKADLPGMRKDEVKVEIEEGNVLRISGERRKEVEERSD--TWHRVERS 112
+ D +ET + +I +ADLPG +K+++K++ ++G L IS +R + +E+ + R ER
Sbjct: 2 KTDIKETDDEYIVEADLPGFKKEDIKLDYKDG-YLTISAKRDESKDEKDKKGNYIRRERY 60
Query: 113 SGQFLRRFRLPENARIDQVKASTEYGVLTVTVPK 146
G F R F LP N +++KA E GVL +T+PK
Sbjct: 61 YGSFSRSFYLP-NVDEEEIKAKYENGVLKITLPK 93
>gnl|CDD|107247 cd06526, metazoan_ACD, Alpha-crystallin domain (ACD) of metazoan
alpha-crystallin-type small(s) heat shock proteins
(Hsps). sHsps are small stress induced proteins with
monomeric masses between 12 -43 kDa, whose common
feature is the Alpha-crystallin domain (ACD). sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps.
Length = 83
Score = 52.1 bits (126), Expect = 9e-10
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 9/78 (11%)
Query: 70 DLPGMRKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQFLRRFRLPENARID 129
D+ G + +E+KV++ N L + G+ EER D V R +F RR++LPE D
Sbjct: 14 DVKGFKPEELKVKVS-DNKLVVEGKH----EEREDEHGYVSR---EFTRRYQLPEGVDPD 65
Query: 130 QVKAS-TEYGVLTVTVPK 146
V +S + GVLT+ PK
Sbjct: 66 SVTSSLSSDGVLTIEAPK 83
>gnl|CDD|107227 cd06470, ACD_IbpA-B_like, Alpha-crystallin domain (ACD) found in
Escherichia coli inclusion body-associated proteins IbpA
and IbpB, and similar proteins. IbpA and IbpB are 16
kDa small heat shock proteins (sHsps). sHsps are
molecular chaperones that suppress protein aggregation
and protect against cell stress, and are generally
active as large oligomers consisting of multiple
subunits. IbpA and IbpB are produced during high-level
production of various heterologous proteins,
specifically human prorenin, renin and bovine
insulin-like growth factor 2 (bIGF-2), and are strongly
associated with inclusion bodies containing these
heterologous proteins. IbpA and IbpB work as an
integrated system to stabilize thermally aggregated
proteins in a disaggregation competent state. The
chaperone activity of IbpB is also significantly
elevated as the temperature increases from normal to
heat shock. The high temperature results in the
disassociation of 2-3-MDa IbpB oligomers into smaller
approximately 600-kDa structures. This elevated activity
seen under heat shock conditions is retained for an
extended period of time after the temperature is
returned to normal. IbpA also forms multimers.
Length = 90
Score = 46.0 bits (110), Expect = 2e-07
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 71 LPGMRKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQFLRRFRLPENARIDQ 130
+ G +D++++E+E N L ++G++ E E + HR + F R F L ++ ++
Sbjct: 19 VAGFSEDDLEIEVE-NNQLTVTGKKADEENEEREYLHR-GIAKRAFERSFNLADHVKV-- 74
Query: 131 VKASTEYGVLTV 142
A E G+LT+
Sbjct: 75 KGAELENGLLTI 86
>gnl|CDD|107230 cd06475, ACD_HspB1_like, Alpha crystallin domain (ACD) found in
mammalian small (s)heat shock protein (Hsp)-27 (also
denoted HspB1 in human) and similar proteins. sHsps are
molecular chaperones that suppress protein aggregation
and protect against cell stress, and are generally
active as large oligomers consisting of multiple
subunits. Hsp27 shows enhanced synthesis in response to
stress. It is a molecular chaperone which interacts with
a large number of different proteins. It is found in
many types of human cells including breast, uterus,
cervix, platelets and cancer cells. Hsp27 has diverse
cellular functions including, chaperoning, regulation of
actin polymerization, keratinocyte differentiation,
regulation of inflammatory pathways in keratinocytes,
and protection from oxidative stress through modulating
glutathione levels. It is also a subunit of
AUF1-containing protein complexes. It has been linked to
several transduction pathways regulating cellular
functions including differentiation, cell growth,
development, and apoptosis. Its activity can be
regulated by phosphorylation. Its unphosphorylated state
is a high molecular weight aggregated form (100-800kDa)
composed of up to 24 subunits, which forms as a result
of multiple interactions within the ACD, and is required
for chaperone function and resistance to oxidative
stress. Upon phosphorylation these large aggregates
rapidly disassociate to smaller oligomers and chaperone
activity is modified. High constitutive levels of Hsp27
have been detected in various cancer cells, in
particular those of carcinoma origin. Over-expression of
Hsp27 has a protective effect against various
diseases-processes, including Huntington's disease.
Mutations in Hsp27 have been associated with a form of
distal hereditary motor neuropathy type II and
Charcot-Marie-Tooth disease type 2.
Length = 86
Score = 32.9 bits (75), Expect = 0.014
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 9/77 (11%)
Query: 70 DLPGMRKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQFLRRFRLPENARID 129
D+ +E+ V+ ++G V+ I+G+ EE+ D V R F R++ LP
Sbjct: 17 DVNHFAPEELVVKTKDG-VVEITGKH----EEKQDEHGFVSRC---FTRKYTLPPGVDPT 68
Query: 130 QVKAS-TEYGVLTVTVP 145
V +S + G+LTV P
Sbjct: 69 AVTSSLSPDGILTVEAP 85
>gnl|CDD|225191 COG2309, AmpS, Leucyl aminopeptidase (aminopeptidase T) [Amino acid
transport and metabolism].
Length = 385
Score = 31.9 bits (73), Expect = 0.11
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 72 PGMRKDEVKVEIEEGNVLRISGERRKEVEER 102
G + +++ E+G V+ IS E+ +EV +R
Sbjct: 252 QGTLIEGIRLTFEDGKVVEISAEKGEEVLKR 282
>gnl|CDD|107233 cd06478, ACD_HspB4-5-6, Alpha-crystallin domain found in
alphaA-crystallin (HspB4), alphaB-crystallin (HspB5),
and the small heat shock protein (sHsp) HspB6, also
known as Hsp20. sHsps are molecular chaperones that
suppress protein aggregation and protect against cell
stress, and are generally active as large oligomers
consisting of multiple subunits. Alpha crystallin, an
abundant protein in the mammalian lens, is a large (700
kDa) heteropolymer composed of HspB4 and HspB5,
generally in a molar ratio of HspB4:HspB5 of 3:1. Only
trace amounts of HspB4 are found in tissues other than
the lens. HspB5 on the other hand is also expressed
constitutively in other tissues including brain, heart,
and type I and type IIa skeletal muscle fibers, and in
several cancers including gliomas, renal cell
carcinomas, basal-like and metaplastic breast
carcinomas, and head and neck cancer. HspB5's functions
include effects on the apoptotic pathway and on
metastasis. Phosphorylation of HspB5 reduces its
oligomerization and anti-apoptotic activities. HspB5 is
protective in demyelinating disease such as multiple
sclerosis (MS), being a negative regulator of
inflammation. In early active MS lesions it is the most
abundant gene transcript and an autoantigen, the immune
response against it would disrupt its function and
worsen inflammation and demyelination. Given as therapy
for ongoing demyelinating disease it may counteract this
effect. It is an autoantigen in the pathogenesis of
various other inflammatory disorders including
Lens-associated uveitis (LAU), and Behcet's disease.
Mutations in HspB5 have been associated with diseases
including dominant cataract and desmin-related myopathy.
Mutations in HspB4 have been associated with Autosomal
Dominant Congenital Cataract (ADCC). HspB6 (Hsp20) is
ubiquitous and is involved in diverse functions
including regulation of glucose transport and
contraction of smooth muscle, in platelet aggregation,
in cardioprotection, and in the prevention of apoptosis.
It interacts with the universal scaffolding and adaptor
protein 14-3-3, and also with the proapoptotic protein
Bax.
Length = 83
Score = 29.3 bits (66), Expect = 0.26
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 77 DEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQFLRRFRLPENARIDQVKAS-T 135
+E+ V++ G+ + I G+ EER D + R +F RR+RLP + +S +
Sbjct: 21 EELSVKVL-GDFVEIHGKH----EERQDEHGFISR---EFHRRYRLPPGVDPAAITSSLS 72
Query: 136 EYGVLTVTVPK 146
GVLT++ P+
Sbjct: 73 ADGVLTISGPR 83
>gnl|CDD|224519 COG1603, RPP1, RNase P/RNase MRP subunit p30 [Translation,
ribosomal structure and biogenesis].
Length = 229
Score = 28.5 bits (64), Expect = 1.5
Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 5/59 (8%)
Query: 43 DLSTETAALANTRID-----WRETPEAHIFKADLPGMRKDEVKVEIEEGNVLRISGERR 96
L AA+ N R+D + + + V +EI +LR SG RR
Sbjct: 86 SLKVNRAAVENKRVDILSHPETGRKDPGLDHVLARLAAEKGVALEISLRPLLRSSGYRR 144
>gnl|CDD|215872 pfam00347, Ribosomal_L6, Ribosomal protein L6.
Length = 76
Score = 26.4 bits (59), Expect = 2.7
Identities = 10/63 (15%), Positives = 23/63 (36%), Gaps = 15/63 (23%)
Query: 63 EAHIFKADLPGMRKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQFLRRFRL 122
++P V V++E+ V+ +SG +++V + + +R
Sbjct: 20 PKGELTREIP----PGVTVKVEKITVIIVSGIDKEKVGQFAALI-----------GTYRA 64
Query: 123 PEN 125
P
Sbjct: 65 PIP 67
>gnl|CDD|151112 pfam10579, Rapsyn_N, Rapsyn N-terminal myristoylation and linker
region. Neuromuscular junction formation relies upon
the clustering of acetylcholine receptors and other
proteins in the muscle membrane. Rapsyn is a peripheral
membrane protein that is selectively concentrated at the
neuromuscular junction and is essential for the
formation of synaptic acetylcholine receptor aggregates.
Acetylcholine receptors fail to aggregate beneath nerve
terminals in mice where rapsyn has been knocked out. The
N-terminal six amino acids of rapsyn are its
myristoylation site, and myristoylation is necessary for
the targeting of the protein to the membrane.
Length = 80
Score = 26.4 bits (58), Expect = 3.0
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 74 MRKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQFLRRFRL 122
M +D+ K +IE+G L S K +E W +V + RFR+
Sbjct: 1 MGQDQTKQQIEKGLRLYQSNNTEKALE----IWRKVLEKTTDREGRFRV 45
>gnl|CDD|235462 PRK05433, PRK05433, GTP-binding protein LepA; Provisional.
Length = 600
Score = 27.3 bits (62), Expect = 3.6
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 6/32 (18%)
Query: 68 KADLPGMRKDEVKVEIEE------GNVLRISG 93
K DLP + VK EIE+ + + +S
Sbjct: 135 KIDLPAADPERVKQEIEDVIGIDASDAVLVSA 166
>gnl|CDD|218355 pfam04969, CS, CS domain. The CS and CHORD (pfam04968) are fused
into a single polypeptide chain in metazoans but are
found in separate proteins in plants; this is thought to
be indicative of an interaction between CS and CHORD. It
has been suggested that the CS domain is a binding
module for HSP90, implying that CS domain-containing
proteins are involved in recruiting heat shock proteins
to multiprotein assemblies.
Length = 78
Score = 26.0 bits (58), Expect = 3.8
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 55 RIDWRETPEAHIFKADLPG-MRKDEVKVEIEEGNV-LRISGERRKEVE 100
R DW +T + L G +K +VKVEI+ ++ + I G KE
Sbjct: 2 RYDWYQTLDEVTITIPLKGVTKKKDVKVEIKPRSLKVSIKGPGGKEYL 49
>gnl|CDD|235382 PRK05270, PRK05270, galactose-1-phosphate uridylyltransferase;
Provisional.
Length = 493
Score = 27.1 bits (61), Expect = 4.3
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 11/35 (31%)
Query: 126 ARIDQ---VKASTEYGVLTVTV--------PKVIA 149
I + K T+YG L +T+ PK IA
Sbjct: 127 DAIAKNISWKVPTKYGDLEITINLSKPEKDPKAIA 161
>gnl|CDD|107236 cd06481, ACD_HspB9_like, Alpha crystallin domain (ACD) found in
mammalian small heat shock protein (sHsp) HspB9 and
similar proteins. sHsps are molecular chaperones that
suppress protein aggregation and protect against cell
stress, and are generally active as large oligomers
consisting of multiple subunits. Human (h) HspB9 is
expressed exclusively in the normal testis and in
various tumor samples and is a cancer/testis antigen.
hHspB9 interacts with TCTEL1 (T-complex testis
expressed protein -1), a subunit of dynein. hHspB9 and
TCTEL1 are co-expressed in similar cells within the
testis and in tumor cells. Included in this group is
Xenopus Hsp30, a developmentally-regulated
heat-inducible molecular chaperone.
Length = 87
Score = 25.8 bits (57), Expect = 4.6
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 68 KADLPGMRKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQFLRRFRLPEN 125
K D+ G +++ V ++ G L ++G+R K+ E D +F+R +LPE+
Sbjct: 12 KLDVRGFSPEDLSVRVD-GRKLVVTGKREKKNE---DEKGSFSYEYQEFVREAQLPEH 65
>gnl|CDD|215180 PLN02316, PLN02316, synthase/transferase.
Length = 1036
Score = 27.1 bits (60), Expect = 5.0
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 9 FGRTSNIFDPLSPDIWDPFQD 29
+ I + + PDIWDP+ D
Sbjct: 786 LYKFHGILNGIDPDIWDPYND 806
>gnl|CDD|132563 TIGR03524, GldJ, gliding motility-associated lipoprotein GldJ.
Members of this protein family are exclusive to the
Bacteroidetes phylum (previously
Cytophaga-Flavobacteria-Bacteroides). GldJ is a
lipoprotein linked to a type of rapid surface gliding
motility found in certain Bacteroidetes, such as
Flavobacterium johnsoniae. Knockouts of GldJ abolish the
gliding phenotype. GldJ is homologous to GldK. There is
a GldJ homolog in Cytophaga hutchinsonii and several
other species that has a different, shorter architecture
and is represented by a separate model. Gliding motility
appears closely linked to chitin utilization in the
model species Flavobacterium johnsoniae. Bacteroidetes
with members of this protein family appear to have all
of the genes associated with gliding motility.
Length = 559
Score = 26.8 bits (59), Expect = 6.1
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 86 GNVLRISGERRKEVEERSDTWHRVERSSGQFLRRFRLPENA 126
G R GE R V E D + +R G +R+RLP A
Sbjct: 232 GRTRRKKGEARPAVPEEKDAY--QQRKDGIITQRYRLPTEA 270
>gnl|CDD|217379 pfam03125, Sre, C. elegans Sre G protein-coupled chemoreceptor.
Caenorhabditis elegans Sre proteins are candidate
chemosensory receptors. There are four main recognised
groups of such receptors: Odr-10, Sra, Sro, and Srg. Sre
(this family), Sra pfam02117 and Srb pfam02175 comprise
the Sra group. All of the above receptors are thought to
be G protein-coupled seven transmembrane domain
proteins. The existence of several different
chemosensory receptors underlies the fact that in spite
of having only 20-30 chemosensory neurones, C. elegans
detects hundreds of different chemicals, with the
ability to discern individual chemicals among
combinations.
Length = 363
Score = 26.5 bits (59), Expect = 6.9
Identities = 12/46 (26%), Positives = 16/46 (34%)
Query: 62 PEAHIFKADLPGMRKDEVKVEIEEGNVLRISGERRKEVEERSDTWH 107
P FK L VE EE R+S E + + +W
Sbjct: 318 PTIGCFKVRLRKKTITLESVEGEEDKDKRLSKETDTYFRQLNKSWI 363
>gnl|CDD|107245 cd06497, ACD_alphaA-crystallin_HspB4, Alpha-crystallin domain found
in the small heat shock protein (sHsp) alphaA-crystallin
(HspB4, 20kDa). sHsps are molecular chaperones that
suppress protein aggregation and protect against cell
stress, and are generally active as large oligomers
consisting of multiple subunits. Alpha crystallin, an
abundant protein in the mammalian lens, is a large (700
kDa) heteropolymer composed of HspB4 and HspB5,
generally in a molar ratio of HspB4:HspB5 of 3:1. Only
trace amounts of HspB4 are found in tissues other than
the lens. HspB5 does not belong to this group. Mutations
inHspB4 have been associated with Autosomal Dominant
Congenital Cataract (ADCC). The chaperone-like functions
of HspB4 are considered important for maintaining lens
transparency and preventing cataract.
Length = 86
Score = 25.3 bits (55), Expect = 7.1
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 101 ERSDTWHRVERSSGQFLRRFRLPENARIDQVKAS-TEYGVLTVTVPK 146
ER D + R +F RR+RLP N + S + G+LT + PK
Sbjct: 43 ERQDDHGYISR---EFHRRYRLPSNVDQSAITCSLSADGMLTFSGPK 86
>gnl|CDD|216286 pfam01076, Mob_Pre, Plasmid recombination enzyme. With some
plasmids, recombination can occur in a site specific
manner that is independent of RecA. In such cases, the
recombination event requires another protein called
Pre. Pre is a plasmid recombination enzyme. This
protein is also known as Mob (conjugative
mobilisation).
Length = 196
Score = 26.1 bits (58), Expect = 7.5
Identities = 7/34 (20%), Positives = 13/34 (38%)
Query: 53 NTRIDWRETPEAHIFKADLPGMRKDEVKVEIEEG 86
N ID + + D +++K I+E
Sbjct: 33 NKDIDPERSGLNYDLVNDKTIRYDEDIKEYIKEN 66
>gnl|CDD|144848 pfam01407, Gemini_AL3, Geminivirus AL3 protein. Geminiviruses are
small, ssDNA-containing plant viruses. Geminiviruses
contain three ORFs (designated AL1, AL2, and AL3) that
overlap and are specified by multiple polycistronic
mRNAs. The AL3 protein comprises approximately 0.05% of
the cellular proteins and is present in the soluble and
organelle fractions. AL3 may form oligomers.
Immunoprecipitation of AL3 in a baculovirus expression
system extracts expressing both AL1 pfam00799 and AL3
showed that the two proteins also complex with each
other. The AL3 protein is involved in viral replication.
Length = 120
Score = 25.5 bits (57), Expect = 7.9
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 106 WHRVERSSGQFLRRFR 121
W + +G+FLR F+
Sbjct: 71 WTTLRPQTGRFLRVFK 86
>gnl|CDD|234165 TIGR03303, OM_YaeT, outer membrane protein assembly complex, YaeT
protein. Members of this protein family are the YaeT
protein of the YaeT/YfiO complex for assembling proteins
into the outer membrane of Gram-negative bacteria. This
protein is similar in sequence and function to a
non-essential paralog, YtfM, that is also in the Omp85
family. Members of this family typically have five
tandem copies of the surface antigen variable number
repeat (pfam07244), followed by an outer membrane
beta-barrel domain (pfam01103), while the YtfM family
typically has a single pfam07244 repeat [Protein fate,
Protein and peptide secretion and trafficking].
Length = 741
Score = 26.4 bits (59), Expect = 8.7
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 131 VKASTEYGVLTVTVPKVIADRPDVRAIEISG 161
VK E GVL + V +RP + +I SG
Sbjct: 52 VKIEREGGVLVIKV----KERPIINSIVFSG 78
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.134 0.391
Gapped
Lambda K H
0.267 0.0604 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,463,397
Number of extensions: 771333
Number of successful extensions: 808
Number of sequences better than 10.0: 1
Number of HSP's gapped: 793
Number of HSP's successfully gapped: 48
Length of query: 161
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 72
Effective length of database: 6,990,096
Effective search space: 503286912
Effective search space used: 503286912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.2 bits)