RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 037294
(161 letters)
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone,
alpha-crystallin; 2.70A {Triticum aestivum} SCOP:
b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Length = 151
Score = 188 bits (479), Expect = 2e-62
Identities = 91/161 (56%), Positives = 120/161 (74%), Gaps = 10/161 (6%)
Query: 1 MSLIPSGFFGRTSNIFDPLSPDIWDPFQDLPFSSLSLSAPRSDLSTETAALANTRIDWRE 60
MS++ R SN+FDP + DPF S+ S +ETAA AN R+DW+E
Sbjct: 1 MSIV------RRSNVFDPFADLWADPFDTFR----SIVPAISGGGSETAAFANARMDWKE 50
Query: 61 TPEAHIFKADLPGMRKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQFLRRF 120
TPEAH+FKADLPG++K+EVKVE+E+GNVL +SGER KE E+++D WHRVERSSG+F+RRF
Sbjct: 51 TPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRF 110
Query: 121 RLPENARIDQVKASTEYGVLTVTVPKVIADRPDVRAIEISG 161
RL E+A++++VKA E GVLTVTVPK +P+V+AI+ISG
Sbjct: 111 RLLEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIQISG 151
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high
resolution, stress response, chaperone; 1.64A
{Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Length = 100
Score = 142 bits (360), Expect = 5e-45
Identities = 33/92 (35%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Query: 55 RIDWRETPEAHIFKADLPGMRKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSG 114
R+D +E + ADLPG+ +++V+++ +L I GER+ E ++ + R+ER G
Sbjct: 6 RVDIKEEVNHFVLYADLPGIDPSQIEVQMD-KGILSIRGERKSESSTETERFSRIERRYG 64
Query: 115 QFLRRFRLPENARIDQVKASTEYGVLTVTVPK 146
F RRF LP++A D + A+ GVL + +PK
Sbjct: 65 SFHRRFALPDSADADGITAAGRNGVLEIRIPK 96
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A
{Methanocaldococcus jannaschii} PDB: 1shs_A
Length = 161
Score = 135 bits (342), Expect = 1e-41
Identities = 29/146 (19%), Positives = 51/146 (34%), Gaps = 2/146 (1%)
Query: 14 NIFDPLSPDIWDPFQDLPFSSLSLSAPRSDLSTETAALANTRIDWRETPEAHIFKADLPG 73
F P ++ +P + + I E + A LPG
Sbjct: 17 EFFATPMTGTTMIQSSTPLPPAAIESPAVAAGIQISGKGFMPISIIEGDQHIKVIAWLPG 76
Query: 74 MRKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVE-RSSGQFLRRFRLPENARIDQVK 132
+ K+++ + G+ L I +R + S+ E + R +LP + +
Sbjct: 77 VNKEDIILNAV-GDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENAS 135
Query: 133 ASTEYGVLTVTVPKVIADRPDVRAIE 158
A E GVL+V +PK + IE
Sbjct: 136 AKFENGVLSVILPKAESSIKKGINIE 161
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain,
chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Length = 123
Score = 127 bits (322), Expect = 6e-39
Identities = 28/125 (22%), Positives = 46/125 (36%), Gaps = 12/125 (9%)
Query: 23 IWDPFQDLPFSSLSLSAPRSDLSTETAALANTRIDWRETPEAHIFKADLPGMRKDEVKVE 82
++ ++L +LS L +D E + ADL G K+++K
Sbjct: 1 MYYLGKEL-------QKRSEELSRGFYELVYPPVDMYEEGGYLVVVADLAGFNKEKIKAR 53
Query: 83 IEEGNVLRISGERRKEVEERSDTWHRVERSSGQFLRRFRLPENARID-QVKASTEYGVLT 141
+ N L I ER + + + RLP N D ++ E GVLT
Sbjct: 54 VSGQNELIIEAEREITEPGV----KYLTQRPKYVRKVIRLPYNVAKDAEISGKYENGVLT 109
Query: 142 VTVPK 146
+ +P
Sbjct: 110 IRIPI 114
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity,
intermolecular INTE chaperone, SHSP, human, small
heat-shock protein, cataract; NMR {Homo sapiens} PDB:
2ygd_A
Length = 175
Score = 76.5 bits (188), Expect = 2e-18
Identities = 35/159 (22%), Positives = 62/159 (38%), Gaps = 12/159 (7%)
Query: 5 PSGFFGRTSNIFDPLSPDIWDPFQDLPFSSLSLSAPR--SDLSTETAALANTRIDWRETP 62
P F S +FD + P S+ + + R
Sbjct: 13 PFFPFHSPSRLFDQFFGEHLLESDLFPTSTSLSPFYLRPPSFLRAPSWFDTGLSEMRLEK 72
Query: 63 EAHIFKADLPGMRKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQFLRRFRL 122
+ D+ +E+KV++ G+V+ + G+ EER D + R +F R++R+
Sbjct: 73 DRFSVNLDVKHFSPEELKVKV-LGDVIEVHGKH----EERQDEHGFISR---EFHRKYRI 124
Query: 123 PENARIDQVKAS-TEYGVLTVTVPKVIADRPDVRAIEIS 160
P + + +S + GVLTV P+ P+ R I I+
Sbjct: 125 PADVDPLTITSSLSSDGVLTVNGPRKQVSGPE-RTIPIT 162
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress
response; 1.12A {Rattus norvegicus}
Length = 101
Score = 74.0 bits (182), Expect = 3e-18
Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 9/95 (9%)
Query: 59 RETPEAHIFKADLPGMRKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQFLR 118
P D+ +E+ V++ G+ + + EER D + R +F R
Sbjct: 7 PTDPGYFSVLLDVKHFSPEEISVKV-VGDHVEVHARH----EERPDEHGFIAR---EFHR 58
Query: 119 RFRLPENARIDQVKAS-TEYGVLTVTVPKVIADRP 152
R+RLP V ++ + GVL++ A
Sbjct: 59 RYRLPPGVDPAAVTSALSPEGVLSIQATPASAQAS 93
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone,
charcot-marie-tooth DISE neuronopathy, IG-like fold,
stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Length = 85
Score = 71.6 bits (176), Expect = 2e-17
Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 9/88 (10%)
Query: 60 ETPEAHIFKADLPGMRKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQFLRR 119
T + D+ DE+ V+ + V+ I+G+ R D + R F R+
Sbjct: 4 HTADRWRVSLDVNHFAPDELTVKT-KDGVVEITGKH----AARQDEHGYISR---CFTRK 55
Query: 120 FRLPENARIDQVKAS-TEYGVLTVTVPK 146
+ LP QV +S + G LTV P
Sbjct: 56 YTLPPGVDPTQVSSSLSPEGTLTVEAPM 83
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone,
stress protein, eye LEN protein, cataract; HET: MSE;
2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Length = 90
Score = 70.2 bits (172), Expect = 7e-17
Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 60 ETPEAHIFKADLPGMRKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQFLRR 119
+ D+ +E+KV++ G+V+ + G+ EER D + R +F R+
Sbjct: 3 MEKDRFSVNLDVKHFSPEELKVKV-LGDVIEVHGKH----EERQDEHGFISR---EFHRK 54
Query: 120 FRLPENARIDQVKAS-TEYGVLTVTVPKVIADRPD 153
+R+P + + +S + GVLTV P+ P+
Sbjct: 55 YRIPADVDPLTITSSMSSDGVLTVNGPRKQVSGPE 89
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity,
protein aggregation, CRYS eye lens protein, chaperone;
1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Length = 106
Score = 69.5 bits (170), Expect = 2e-16
Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 12/106 (11%)
Query: 59 RETPEAHIFKADLPGMRKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQFLR 118
R + + D+ +++ V++ + + + I G+ ER D + R +F R
Sbjct: 8 RSDRDKFVIFLDVKHFSPEDLTVKV-QEDFVEIHGKH----NERQDDHGYISR---EFHR 59
Query: 119 RFRLPENARIDQVKAS-TEYGVLTVTVPKVIADRPDV---RAIEIS 160
R+RLP N + S + G+LT + PK+ + RAI +S
Sbjct: 60 RYRLPSNVDQSALSCSLSADGMLTFSGPKIPSGVDAGHSERAIPVS 105
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone;
2.5A {Taenia saginata}
Length = 314
Score = 62.5 bits (151), Expect = 2e-12
Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 5/90 (5%)
Query: 57 DWRETPEAHIFKADLPGMRKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQF 116
+ + H+ P +VKV + GN + + G KE E+ + H R +F
Sbjct: 228 AEDGSKKIHLELKVDPHFAPKDVKVWAK-GNKVYVHGVTGKE-EKTENASHSEHR---EF 282
Query: 117 LRRFRLPENARIDQVKASTEYGVLTVTVPK 146
+ F PE + +A G++ V P
Sbjct: 283 YKAFVTPEVVDASKTQAEIVDGLMVVEAPL 312
Score = 51.4 bits (122), Expect = 2e-08
Identities = 19/138 (13%), Positives = 45/138 (32%), Gaps = 15/138 (10%)
Query: 9 FGRTSNIFDPLSPDIWDPFQDLPFSSLSLSAPRSDLSTETAALANTRIDWRETPEAHIFK 68
F N F+ + ++ L + P E L + ++
Sbjct: 63 FTAMDNAFESVMKEMSAIQPREFHPELEYTQPG-----ELDFLKDAYEVGKDGRLHFKVY 117
Query: 69 ADLPGMRKDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQFLRRFRLPENARI 128
++ + +E+ ++ + N L + ++ + S R LP +
Sbjct: 118 FNVKNFKAEEITIKAD-KNKLVVRAQKSVACGDA--------AMSESVGRSIPLPPSVDR 168
Query: 129 DQVKAS-TEYGVLTVTVP 145
+ ++A+ T VL + P
Sbjct: 169 NHIQATITTDDVLVIEAP 186
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.6 bits (94), Expect = 1e-04
Identities = 22/139 (15%), Positives = 41/139 (29%), Gaps = 36/139 (25%)
Query: 20 SPDIWDPF----------QDLPFSSLSLSAPRSDLSTETAALANTRIDWRETPEAHIFKA 69
+ W+ F + + +A + +S + ++ T E +
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP---DEVKS--LL-L 308
Query: 70 DLPGMRKDEVKVEIEEGNVLRIS--GERRKEVEERSDTWHRVE--------RSSGQFL-- 117
R ++ E+ N R+S E ++ D W V SS L
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 118 ----RRFR----LPENARI 128
+ F P +A I
Sbjct: 369 AEYRKMFDRLSVFPPSAHI 387
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.3 bits (86), Expect = 0.001
Identities = 29/172 (16%), Positives = 53/172 (30%), Gaps = 80/172 (46%)
Query: 22 DIWDPFQDLPFSSLSL----------SAPRSDLSTETAALANTRIDWRETPEAHIFKADL 71
D W+ F ++++ + P + L
Sbjct: 287 DSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLP-------------------------- 320
Query: 72 PGMRKDEVKVEIEEGN---VLRISGERRKEVEERSDTW--H-----RVERS--------- 112
P + +D + E EG +L IS +++V++ + H +VE S
Sbjct: 321 PSILEDSL--ENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV 378
Query: 113 -SG---------QFLRRFRLPENARIDQVKA---------STEYGVLTVTVP 145
SG LR+ + P + +DQ + S + L V P
Sbjct: 379 VSGPPQSLYGLNLTLRKAKAP--SGLDQSRIPFSERKLKFSNRF--LPVASP 426
Score = 27.3 bits (60), Expect = 3.2
Identities = 18/122 (14%), Positives = 45/122 (36%), Gaps = 23/122 (18%)
Query: 30 LPFSS-LSL----------SAPRSDLSTET---AALANTRIDWRETPEAHIFKADLPGMR 75
+ S + + + PR +L A+ R+ + EA + + G R
Sbjct: 1777 MSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKR 1836
Query: 76 KDEVKVEI----EEGNVLRISGERRKEVEERSDTWHRVERSSGQFLRRFRLPENARIDQV 131
+ VEI E +G+ R ++ ++ + ++ + L ++ +++V
Sbjct: 1837 TGWL-VEIVNYNVENQQYVAAGDLR-ALDTVTNVLNFIKLQKIDIIE---LQKSLSLEEV 1891
Query: 132 KA 133
+
Sbjct: 1892 EG 1893
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.044
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 8/27 (29%)
Query: 33 SSLSLSAPRSDLSTETA-ALA-NTRID 57
+SL L A ++A ALA ++
Sbjct: 27 ASLKLYAD------DSAPALAIKATME 47
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane,
nucleotide-binding, translation; 2.80A {Escherichia
coli} PDB: 3deg_C*
Length = 599
Score = 28.2 bits (64), Expect = 1.4
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 6/32 (18%)
Query: 68 KADLPGMRKDEVKVEIEE------GNVLRISG 93
K DLP + V EIE+ + +R S
Sbjct: 132 KIDLPAADPERVAEEIEDIVGIDATDAVRCSA 163
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like
domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus}
PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Length = 600
Score = 28.2 bits (64), Expect = 1.4
Identities = 11/32 (34%), Positives = 13/32 (40%), Gaps = 6/32 (18%)
Query: 68 KADLPGMRKDEVKVEIEE------GNVLRISG 93
K DLP D VK +IEE + S
Sbjct: 134 KIDLPSADVDRVKKQIEEVLGLDPEEAILASA 165
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.8 bits (61), Expect = 1.5
Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 15/51 (29%)
Query: 58 WRETPEAHIFKADLPGMRKDEVKVEIEEGNVLRISGERRKEVEERSDTWHR 108
WRE + + D ++ E E + +K++EE W++
Sbjct: 90 WREEQRKRLQELDAASKVMEQ---EWRE--------KAKKDLEE----WNQ 125
>3cf4_A Acetyl-COA decarboxylase/synthase alpha subunit; methanomicrobia,
iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A
{Methanosarcina barkeri}
Length = 807
Score = 27.1 bits (59), Expect = 3.2
Identities = 10/43 (23%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 62 PEAHIF---KADLPGMRKDEVKVEIEEGNVLRISGERRKEVEE 101
+ F +ADLP ++ + E+E+ + I +R+K +
Sbjct: 744 EDWWKFVRTEADLPLATREALLKELEKEHGWEIDWKRKKIISG 786
>2xcm_C SGT1-like protein, cytosolic heat shock protein 90;
chaperone-protein binding complex, stress response;
HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S*
Length = 92
Score = 25.9 bits (57), Expect = 3.4
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 55 RIDWRETPEAHIFKADLPGMRKDEVKVEIEEGNV 88
R ++ + PE + G+ K V ++ E +
Sbjct: 4 RHEYYQKPEEVVVTVFAKGIPKQNVNIDFGEQIL 37
>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta
strands, similar to P23, lacking LAST beta strand SEEN
in P23, protein degradation; NMR {Homo sapiens} SCOP:
b.15.1.3
Length = 114
Score = 26.0 bits (57), Expect = 3.7
Identities = 8/43 (18%), Positives = 19/43 (44%)
Query: 46 TETAALANTRIDWRETPEAHIFKADLPGMRKDEVKVEIEEGNV 88
+ + + DW +T + + ++K++V VE E +
Sbjct: 2 SHMTHQSKIKYDWYQTESQVVITLMIKNVQKNDVNVEFSEKEL 44
>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein
structure initiative, midwest center for structural
genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}
Length = 92
Score = 25.3 bits (56), Expect = 5.1
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 6/39 (15%)
Query: 77 DEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQ 115
V+ E + ++ GE RK+V E +V SG
Sbjct: 33 KREGVDFEVIWIDKLEGEERKKVIE------KVHSISGS 65
>2p84_A ORF041; structural genomics, hypothetical protein, PSI, protein
STRU initiative, NEW YORK structural genomics research
consortiu nysgrc; 1.80A {Staphylococcus phage} SCOP:
b.172.1.1
Length = 145
Score = 25.8 bits (56), Expect = 5.4
Identities = 10/41 (24%), Positives = 18/41 (43%)
Query: 76 KDEVKVEIEEGNVLRISGERRKEVEERSDTWHRVERSSGQF 116
KD+ EI E +++R VE ++ E +G +
Sbjct: 65 KDKNVKEIYESDIVRNLYGELYVVEWLDGSFVLTEFYNGGY 105
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.391
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,548,357
Number of extensions: 144249
Number of successful extensions: 350
Number of sequences better than 10.0: 1
Number of HSP's gapped: 325
Number of HSP's successfully gapped: 28
Length of query: 161
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 75
Effective length of database: 4,300,587
Effective search space: 322544025
Effective search space used: 322544025
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.3 bits)