BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037299
(1111 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VEA|A Chain A, The Complete Sensory Module Of The Cyanobacterial
Phytochrome Cph1 In The Pr-State
Length = 520
Score = 215 bits (547), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 152/505 (30%), Positives = 245/505 (48%), Gaps = 48/505 (9%)
Query: 96 IQPFGCTIAVDEATFRVIAYSENAGEMLGLAPQSVPNLEKQEILTIGTDVRTLFTSSSSV 155
IQP G + + E + S N +LG +P+ + +G + +F S
Sbjct: 26 IQPHGLVVVLQEPDLTISQISANCTGILGRSPEDL----------LGRTLGEVFDSFQID 75
Query: 156 LLEKAFGAREITLLNPIWIHSKNTGKPFY---AILHRVDVGIVI-DLEPARTEDPALSIA 211
++ A +I+ LNP + ++ G F + HR G+++ +LEPA T D L
Sbjct: 76 PIQSRLTAGQISSLNPSKLWARVMGDDFVIFDGVFHRNSDGLLVCELEPAYTSD-NLPFL 134
Query: 212 GAVQSQKLAVRAISQLQSLPGGDIKLLCDTVVESVRQLTGYDRVMVYRFHEDEHGEVVAE 271
G A+ + Q +++ D +VE VR++TG+DRVM+YRF E+ HG+V+AE
Sbjct: 135 GFYHMANAALNRLRQ-----QANLRDFYDVIVEEVRRMTGFDRVMLYRFDENNHGDVIAE 189
Query: 272 SKRPDLEPYFGLHYPATDIPQASRFLFKQNRVRMIVDCH--ATPLCVIQDEGLMQPLCLV 329
KR D+EPY GLHYP +DIPQ +R LF N +R+I D + A PL + + + L
Sbjct: 190 DKRDDMEPYLGLHYPESDIPQPARRLFIHNPIRVIPDVYGVAVPLTPAVNPSTNRAVDLT 249
Query: 330 GSTLRAPHGCHAQYMANMGSIASLALAVIINGNDEEAVG-GRSTTRLWAFGLQLNMEL-- 386
S LR+ + CH Y+ NMG ASL +++I +G+ + T ++ F L+ E
Sbjct: 250 ESILRSAYHCHLTYLKNMGVGASLTISLIKDGHLWGLIACHHQTPKVIPFELRKACEFFG 309
Query: 387 ------QLASQLSEKHVLRTQ-----TLLCDMLLR--DSPAGIVTQSPSIMDLVKCDGAA 433
A + +E R Q +L D + D G+ ++ L GAA
Sbjct: 310 RVVFSNISAQEDTETFDYRVQLAEHEAVLLDKMTTAADFVEGLTNHPDRLLGLTGSQGAA 369
Query: 434 LYYQGKYYPLGVTPTETQIKDIVEWLLTYHGDSTGLSTDSLADAGYPKAATLGDAVCGMA 493
+ + K +G TP E ++ +++WL T SL+ YP A G+
Sbjct: 370 ICFGEKLILVGETPDEKAVQYLLQWLENREVQDV-FFTSSLSQI-YPDAVNFKSVASGLL 427
Query: 494 VAYITKRDFLFWFRSHTAKEIKWGGAKHHPED--KDDGQ-RMHPRSSFKAFLEVVKSRSL 550
I + +FL WFR + + WGG +H + ++DG+ +HPR SF + E+V+ +SL
Sbjct: 428 AIPIARHNFLLWFRPEVLQTVNWGGDPNHAYEATQEDGKIELHPRQSFDLWKEIVRLQSL 487
Query: 551 PWDNAEMDAIHSLQ-----LILRDS 570
PW + E+ + +L+ LILR +
Sbjct: 488 PWQSVEIQSALALKKAIVNLILRQA 512
>pdb|3ZQ5|A Chain A, Structure Of The Y263f Mutant Of The Cyanobacterial
Phytochrome Cph1
Length = 520
Score = 214 bits (544), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 151/505 (29%), Positives = 245/505 (48%), Gaps = 48/505 (9%)
Query: 96 IQPFGCTIAVDEATFRVIAYSENAGEMLGLAPQSVPNLEKQEILTIGTDVRTLFTSSSSV 155
IQP G + + E + S N +LG +P+ + +G + +F S
Sbjct: 26 IQPHGLVVVLQEPDLTISQISANCTGILGRSPEDL----------LGRTLGEVFDSFQID 75
Query: 156 LLEKAFGAREITLLNPIWIHSKNTGKPFY---AILHRVDVGIVI-DLEPARTEDPALSIA 211
++ A +I+ LNP + ++ G F + HR G+++ +LEPA T D L
Sbjct: 76 PIQSRLTAGQISSLNPSKLWARVMGDDFVIFDGVFHRNSDGLLVCELEPAYTSD-NLPFL 134
Query: 212 GAVQSQKLAVRAISQLQSLPGGDIKLLCDTVVESVRQLTGYDRVMVYRFHEDEHGEVVAE 271
G A+ + Q +++ D +VE VR++TG+DRVM+YRF E+ HG+V+AE
Sbjct: 135 GFYHMANAALNRLRQ-----QANLRDFYDVIVEEVRRMTGFDRVMLYRFDENNHGDVIAE 189
Query: 272 SKRPDLEPYFGLHYPATDIPQASRFLFKQNRVRMIVDCH--ATPLCVIQDEGLMQPLCLV 329
KR D+EPY GLHYP +DIPQ +R LF N +R+I D + A PL + + + L
Sbjct: 190 DKRDDMEPYLGLHYPESDIPQPARRLFIHNPIRVIPDVYGVAVPLTPAVNPSTNRAVDLT 249
Query: 330 GSTLRAPHGCHAQYMANMGSIASLALAVIINGNDEEAVG-GRSTTRLWAFGLQLNMEL-- 386
S LR+ + CH ++ NMG ASL +++I +G+ + T ++ F L+ E
Sbjct: 250 ESILRSAYHCHLTFLKNMGVGASLTISLIKDGHLWGLIACHHQTPKVIPFELRKACEFFG 309
Query: 387 ------QLASQLSEKHVLRTQ-----TLLCDMLLR--DSPAGIVTQSPSIMDLVKCDGAA 433
A + +E R Q +L D + D G+ ++ L GAA
Sbjct: 310 RVVFSNISAQEDTETFDYRVQLAEHEAVLLDKMTTAADFVEGLTNHPDRLLGLTGSQGAA 369
Query: 434 LYYQGKYYPLGVTPTETQIKDIVEWLLTYHGDSTGLSTDSLADAGYPKAATLGDAVCGMA 493
+ + K +G TP E ++ +++WL T SL+ YP A G+
Sbjct: 370 ICFGEKLILVGETPDEKAVQYLLQWLENREVQDV-FFTSSLSQI-YPDAVNFKSVASGLL 427
Query: 494 VAYITKRDFLFWFRSHTAKEIKWGGAKHHPED--KDDGQ-RMHPRSSFKAFLEVVKSRSL 550
I + +FL WFR + + WGG +H + ++DG+ +HPR SF + E+V+ +SL
Sbjct: 428 AIPIARHNFLLWFRPEVLQTVNWGGDPNHAYEATQEDGKIELHPRQSFDLWKEIVRLQSL 487
Query: 551 PWDNAEMDAIHSLQ-----LILRDS 570
PW + E+ + +L+ LILR +
Sbjct: 488 PWQSVEIQSALALKKAIVNLILRQA 512
>pdb|4GW9|A Chain A, Structure Of A Bacteriophytochrome And Light-Stimulated
Protomer Swapping With A Gene Repressor
pdb|4GW9|B Chain B, Structure Of A Bacteriophytochrome And Light-Stimulated
Protomer Swapping With A Gene Repressor
pdb|4GW9|C Chain C, Structure Of A Bacteriophytochrome And Light-Stimulated
Protomer Swapping With A Gene Repressor
pdb|4GW9|D Chain D, Structure Of A Bacteriophytochrome And Light-Stimulated
Protomer Swapping With A Gene Repressor
Length = 655
Score = 171 bits (434), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 151/509 (29%), Positives = 222/509 (43%), Gaps = 60/509 (11%)
Query: 89 KIQRGGHIQPFGCTIAVDEATFRVIAYSENAGEMLGLAPQSVPNLEKQEILTIGTDVRTL 148
+I G IQP G + V E R+I S NA E L L SV + EI
Sbjct: 44 EIHLAGSIQPHGALLVVSEPDHRIIQASANAAEFLNLG--SVLGVPLAEI---------- 91
Query: 149 FTSSSSVLLEKAFGAREITLLN-PIWIHSK--NTGKPFYAILHRV-DVGIVIDLEPARTE 204
LL K + T P+ + + N + + HR + G++I+LE A
Sbjct: 92 ----DGDLLIKILPHLDPTAEGXPVAVRCRIGNPSTEYDGLXHRPPEGGLIIELERA--- 144
Query: 205 DPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCDTVVESVRQLTGYDRVMVYRFHEDE 264
P + ++G + +R G ++ LCD +Q TGYDRV VYRF E
Sbjct: 145 GPPIDLSGTLAPALERIRT--------AGSLRALCDDTALLFQQCTGYDRVXVYRFDEQG 196
Query: 265 HGEVVAESKRPDLEPYFGLHYPATDIPQASRFLFKQNRVRMIVDCHATPLCVIQDEGLMQ 324
HGEV +E P LE YFG YP++DIPQ +R L+++ RVR++VD P+ + E +
Sbjct: 197 HGEVFSERHVPGLESYFGNRYPSSDIPQXARRLYERQRVRVLVDVSYQPVPL---EPRLS 253
Query: 325 PLC-----LVGSTLRAPHGCHAQYMANMGSIASLALAVIINGNDEEAVGGRS-TTRLWAF 378
PL G LR+ H QY+ N G A+L +++++ G V R F
Sbjct: 254 PLTGRDLDXSGCFLRSXSPIHLQYLKNXGVRATLVVSLVVGGKLWGLVACHHYLPRFIHF 313
Query: 379 GLQLNMEL-------------QLASQLSEKHVLRTQTLLCDMLLR--DSPAGIVTQSPSI 423
L+ EL A SE V R + + + R D A I S SI
Sbjct: 314 ELRAICELLAEAIATRITALESFAQSQSELFVQRLEQRXIEAITREGDWRAAIFDTSQSI 373
Query: 424 MDLVKCDGAALYYQGKYYPLGVTPTETQIKDIVEWLLTYHGDSTGLSTDSLADAGYPKAA 483
+ + DG AL Y+ + +G P+ +++I W L + ST SL P+ A
Sbjct: 374 LQPLHADGCALVYEDQIRTIGDVPSTQDVREIAGW-LDRQPRAAVTSTASLG-LDVPELA 431
Query: 484 TLGDAVCGMAVAYIT--KRDFLFWFRSHTAKEIKWGGAKHHP-EDKDDGQRMHPRSSFKA 540
L G+ A I+ + +FL WFR + WGG P D + PR SF
Sbjct: 432 HLTRXASGVVAAPISDHRGEFLXWFRPERVHTVTWGGDPKKPFTXGDTPADLSPRRSFAK 491
Query: 541 FLEVVKSRSLPWDNAEMDAIHSLQLILRD 569
+ +VV+ S PW A++ A ++ + D
Sbjct: 492 WHQVVEGTSDPWTAADLAAARTIGQTVAD 520
>pdb|3G6O|A Chain A, Crystal Structure Of P. Aeruginosa Bacteriophytochrome
Pabphp Photosensory Core Domain Mutant Q188l
pdb|3G6O|B Chain B, Crystal Structure Of P. Aeruginosa Bacteriophytochrome
Pabphp Photosensory Core Domain Mutant Q188l
Length = 505
Score = 159 bits (403), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 148/519 (28%), Positives = 224/519 (43%), Gaps = 95/519 (18%)
Query: 94 GHIQPFGCTIAVDEATFRVIAYSENAGEMLGLAPQSVPNLEKQEILTIGTDVRTLFTSSS 153
G IQP G + + A V+A SEN +LG L ++++ G +V +
Sbjct: 21 GAIQPHGALVTL-RADGMVLAASENIQALLGFVASPGSYLTQEQV---GPEVLRM----- 71
Query: 154 SVLLEKAFGAREITLLNPIWIHSKNT--GKPFYAIL-HRVDVGIVIDLEPARTEDPALSI 210
LE+ N W +S T G+ + ++ H ++ E RT D LSI
Sbjct: 72 ---LEEGLTG------NGPWSNSVETRIGEHLFDVIGHSYKEVFYLEFE-IRTAD-TLSI 120
Query: 211 AGAVQSQKLAVRAISQLQSLPGGDIKLLCDTVVESVRQLTGYDRVMVYRFHEDEHGEVVA 270
+ A R I+Q+Q D L V + +R++TGYDRVM YRF D+ GEVVA
Sbjct: 121 TSFTLN---AQRIIAQVQL--HNDTASLLSNVTDELRRMTGYDRVMAYRFRHDDSGEVVA 175
Query: 271 ESKRPDLEPYFGLHYPATDIPQASRFLFKQNRVRMIVDCHATPLCVIQ--DEGLMQPLCL 328
ES+R DLE Y GL YPA+DIP +R L+ QN +R+I D TP+ V + + L
Sbjct: 176 ESRREDLESYLGLRYPASDIPAQARRLYIQNPIRLIADVAYTPMRVFPALNPETNESFDL 235
Query: 329 VGSTLRAPHGCHAQYMANMGSIASLALAVIINGNDEEAVGGRSTTRLWAF---------- 378
S LR+ H +Y+ NMG AS+++++++ G +LW
Sbjct: 236 SYSVLRSVSPIHCEYLTNMGVRASMSISIVVGG------------KLWGLFSCHHMSPKL 283
Query: 379 -GLQLNMELQLASQLSEKHVLRTQTLLCDMLLRDSP-----------------AGIVTQS 420
+ M Q+ SQ+ V R + LLR S +
Sbjct: 284 IPYPVRMSFQIFSQVCSAIVERLEQGRIAELLRVSTERRLALARRARDADDLFGALAHPD 343
Query: 421 PSIMDLVKCDGAALYYQGKYYPLGVTPTETQIKDIVEWLL------TYHGDSTGLSTDSL 474
I L+ CDGA + G+ + E Q ++++ L YH D+ ++
Sbjct: 344 DGIAALIPCDGALVMLGGRTLSIR-GDFERQAGNVLQRLQRDPERDIYHTDNWPQPSEDS 402
Query: 475 ADAGYPKAATLGDAVCGMAVAYITKRD--FLFWFRSHTAKEIKWGGAKHHPED----KDD 528
D G CG+ +++ ++FWFR I+WGG PE
Sbjct: 403 PDGG---------DCCGVLAIRFHRQESGWIFWFRHEEVHRIRWGGK---PEKLLTIGPS 450
Query: 529 GQRMHPRSSFKAFLEVVKSRSLPWDNAEMDAIHSLQLIL 567
G R+ PR SF+A+ EVV+ S PW ++ L+L L
Sbjct: 451 GPRLTPRGSFEAWEEVVRGHSTPWSETDLAIAEKLRLDL 489
>pdb|3C2W|A Chain A, Crystal Structure Of The Photosensory Core Domain Of P.
Aeruginosa Bacteriophytochrome Pabphp In The Pfr State
pdb|3C2W|B Chain B, Crystal Structure Of The Photosensory Core Domain Of P.
Aeruginosa Bacteriophytochrome Pabphp In The Pfr State
pdb|3C2W|C Chain C, Crystal Structure Of The Photosensory Core Domain Of P.
Aeruginosa Bacteriophytochrome Pabphp In The Pfr State
pdb|3C2W|D Chain D, Crystal Structure Of The Photosensory Core Domain Of P.
Aeruginosa Bacteriophytochrome Pabphp In The Pfr State
pdb|3C2W|E Chain E, Crystal Structure Of The Photosensory Core Domain Of P.
Aeruginosa Bacteriophytochrome Pabphp In The Pfr State
pdb|3C2W|F Chain F, Crystal Structure Of The Photosensory Core Domain Of P.
Aeruginosa Bacteriophytochrome Pabphp In The Pfr State
pdb|3C2W|G Chain G, Crystal Structure Of The Photosensory Core Domain Of P.
Aeruginosa Bacteriophytochrome Pabphp In The Pfr State
pdb|3C2W|H Chain H, Crystal Structure Of The Photosensory Core Domain Of P.
Aeruginosa Bacteriophytochrome Pabphp In The Pfr State
pdb|3NHQ|A Chain A, The Dark Pfr Structure Of The Photosensory Core Module Of
P. Aeruginosa Bacteriophytochrome
pdb|3NHQ|B Chain B, The Dark Pfr Structure Of The Photosensory Core Module Of
P. Aeruginosa Bacteriophytochrome
pdb|3NHQ|C Chain C, The Dark Pfr Structure Of The Photosensory Core Module Of
P. Aeruginosa Bacteriophytochrome
pdb|3NHQ|D Chain D, The Dark Pfr Structure Of The Photosensory Core Module Of
P. Aeruginosa Bacteriophytochrome
pdb|3NHQ|E Chain E, The Dark Pfr Structure Of The Photosensory Core Module Of
P. Aeruginosa Bacteriophytochrome
pdb|3NHQ|F Chain F, The Dark Pfr Structure Of The Photosensory Core Module Of
P. Aeruginosa Bacteriophytochrome
pdb|3NHQ|G Chain G, The Dark Pfr Structure Of The Photosensory Core Module Of
P. Aeruginosa Bacteriophytochrome
pdb|3NHQ|H Chain H, The Dark Pfr Structure Of The Photosensory Core Module Of
P. Aeruginosa Bacteriophytochrome
pdb|3NOP|C Chain C, Light-Induced Intermediate Structure L1 Of Pseudomonas
Aeruginosa Bacteriophytochrome
pdb|3NOT|C Chain C, Light-Induced Intermediate Structure L2 Of P. Aeruginosa
Bacteriophytochrome
pdb|3NOU|C Chain C, Light-Induced Intermediate Structure L3 Of P. Aeruginosa
Bacteriophytochrome
Length = 505
Score = 157 bits (397), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 147/519 (28%), Positives = 223/519 (42%), Gaps = 95/519 (18%)
Query: 94 GHIQPFGCTIAVDEATFRVIAYSENAGEMLGLAPQSVPNLEKQEILTIGTDVRTLFTSSS 153
G IQP G + + A V+A SEN +LG L ++++ G +V +
Sbjct: 21 GAIQPHGALVTL-RADGMVLAASENIQALLGFVASPGSYLTQEQV---GPEVLRM----- 71
Query: 154 SVLLEKAFGAREITLLNPIWIHSKNT--GKPFYAIL-HRVDVGIVIDLEPARTEDPALSI 210
LE+ N W +S T G+ + ++ H ++ E RT D LSI
Sbjct: 72 ---LEEGLTG------NGPWSNSVETRIGEHLFDVIGHSYKEVFYLEFE-IRTAD-TLSI 120
Query: 211 AGAVQSQKLAVRAISQLQSLPGGDIKLLCDTVVESVRQLTGYDRVMVYRFHEDEHGEVVA 270
+ A R I+Q+Q D L V + +R++TGYDRVM YRF D+ GEVVA
Sbjct: 121 TSFTLN---AQRIIAQVQL--HNDTASLLSNVTDELRRMTGYDRVMAYRFRHDDSGEVVA 175
Query: 271 ESKRPDLEPYFGLHYPATDIPQASRFLFKQNRVRMIVDCHATPLCVIQ--DEGLMQPLCL 328
ES+R DLE Y G YPA+DIP +R L+ QN +R+I D TP+ V + + L
Sbjct: 176 ESRREDLESYLGQRYPASDIPAQARRLYIQNPIRLIADVAYTPMRVFPALNPETNESFDL 235
Query: 329 VGSTLRAPHGCHAQYMANMGSIASLALAVIINGNDEEAVGGRSTTRLWAF---------- 378
S LR+ H +Y+ NMG AS+++++++ G +LW
Sbjct: 236 SYSVLRSVSPIHCEYLTNMGVRASMSISIVVGG------------KLWGLFSCHHMSPKL 283
Query: 379 -GLQLNMELQLASQLSEKHVLRTQTLLCDMLLRDSP-----------------AGIVTQS 420
+ M Q+ SQ+ V R + LLR S +
Sbjct: 284 IPYPVRMSFQIFSQVCSAIVERLEQGRIAELLRVSTERRLALARRARDADDLFGALAHPD 343
Query: 421 PSIMDLVKCDGAALYYQGKYYPLGVTPTETQIKDIVEWLL------TYHGDSTGLSTDSL 474
I L+ CDGA + G+ + E Q ++++ L YH D+ ++
Sbjct: 344 DGIAALIPCDGALVMLGGRTLSIR-GDFERQAGNVLQRLQRDPERDIYHTDNWPQPSEDS 402
Query: 475 ADAGYPKAATLGDAVCGMAVAYITKRD--FLFWFRSHTAKEIKWGGAKHHPED----KDD 528
D G CG+ +++ ++FWFR I+WGG PE
Sbjct: 403 PDGG---------DCCGVLAIRFHRQESGWIFWFRHEEVHRIRWGGK---PEKLLTIGPS 450
Query: 529 GQRMHPRSSFKAFLEVVKSRSLPWDNAEMDAIHSLQLIL 567
G R+ PR SF+A+ EVV+ S PW ++ L+L L
Sbjct: 451 GPRLTPRGSFEAWEEVVRGHSTPWSETDLAIAEKLRLDL 489
>pdb|3IBR|A Chain A, Crystal Structure Of P. Aeruginosa Bacteriophytochrome
Photosensory Core Module Mutant Q188l In The Mixed PrPFR
STATE
pdb|3IBR|B Chain B, Crystal Structure Of P. Aeruginosa Bacteriophytochrome
Photosensory Core Module Mutant Q188l In The Mixed PrPFR
STATE
Length = 505
Score = 148 bits (373), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 145/521 (27%), Positives = 218/521 (41%), Gaps = 95/521 (18%)
Query: 94 GHIQPFGCTIAVDEATFRVIAYSENAGEMLGLAPQSVPNLEKQEILTIGTDVRTLFTSSS 153
G IQP G + + A V+A SEN +LG L ++++ G +V
Sbjct: 21 GAIQPHGALVTL-RADGXVLAASENIQALLGFVASPGSYLTQEQV---GPEVLRX----- 71
Query: 154 SVLLEKAFGAREITLLNPIWIHSKNT--GKPFYAIL-HRVDVGIVIDLEPARTEDPALSI 210
LE+ N W +S T G+ + ++ H ++ E RT D LSI
Sbjct: 72 ---LEEGLTG------NGPWSNSVETRIGEHLFDVIGHSYKEVFYLEFE-IRTAD-TLSI 120
Query: 211 AGAVQSQKLAVRAISQLQSLPGGDIKLLCDTVVESVRQLTGYDRVMVYRFHEDEHGEVVA 270
+ A R I+Q+Q D L V + +R+ TGYDRV YRF D+ GEVVA
Sbjct: 121 TSFTLN---AQRIIAQVQL--HNDTASLLSNVTDELRRXTGYDRVXAYRFRHDDSGEVVA 175
Query: 271 ESKRPDLEPYFGLHYPATDIPQASRFLFKQNRVRMIVDCHATPLCVIQ--DEGLMQPLCL 328
ES+R DLE Y GL YPA+DIP +R L+ QN +R+I D TP V + + L
Sbjct: 176 ESRREDLESYLGLRYPASDIPAQARRLYIQNPIRLIADVAYTPXRVFPALNPETNESFDL 235
Query: 329 VGSTLRAPHGCHAQYMANMGSIASLALAVIINGNDEEAVGGRSTTRLWAF---------- 378
S LR+ H +Y+ N G AS ++++++ G +LW
Sbjct: 236 SYSVLRSVSPIHCEYLTNXGVRASXSISIVVGG------------KLWGLFSCHHXSPKL 283
Query: 379 -GLQLNMELQLASQLSEKHVLRTQTLLCDMLLRDSP-----------------AGIVTQS 420
+ Q+ SQ+ V R + LLR S +
Sbjct: 284 IPYPVRXSFQIFSQVCSAIVERLEQGRIAELLRVSTERRLALARRARDADDLFGALAHPD 343
Query: 421 PSIMDLVKCDGAALYYQGKYYPLGVTPTETQIKDIVEWLL------TYHGDSTGLSTDSL 474
I L+ CDGA + G+ + E Q ++++ L YH D+ ++
Sbjct: 344 DGIAALIPCDGALVXLGGRTLSI-RGDFERQAGNVLQRLQRDPERDIYHTDNWPQPSEDS 402
Query: 475 ADAGYPKAATLGDAVCGMAVAYITKRD--FLFWFRSHTAKEIKWGGAKHHPED----KDD 528
D G CG+ +++ ++FWFR I+WGG PE
Sbjct: 403 PDGG---------DCCGVLAIRFHRQESGWIFWFRHEEVHRIRWGGK---PEKLLTIGPS 450
Query: 529 GQRMHPRSSFKAFLEVVKSRSLPWDNAEMDAIHSLQLILRD 569
G R+ PR SF+A+ EVV+ S PW ++ L+L L +
Sbjct: 451 GPRLTPRGSFEAWEEVVRGHSTPWSETDLAIAEKLRLDLXE 491
>pdb|2OOL|A Chain A, Crystal Structure Of The Chromophore-Binding Domain Of An
Unusual Bacteriophytochrome Rpbphp3 From R. Palustris
pdb|2OOL|B Chain B, Crystal Structure Of The Chromophore-Binding Domain Of An
Unusual Bacteriophytochrome Rpbphp3 From R. Palustris
Length = 337
Score = 119 bits (299), Expect = 7e-27, Method: Composition-based stats.
Identities = 80/269 (29%), Positives = 131/269 (48%), Gaps = 22/269 (8%)
Query: 94 GHIQPFGCTIAVDEATFRVIAYSENAGEMLGLAPQSVPNLEKQEILTIGTDVRTLFTSSS 153
G IQP G V E R+ + S N ++L P S+ N+ LT ++S
Sbjct: 37 GAIQPHGYLFVVSETDLRIASVSANVEDLLRQPPASLLNVPIAHYLT----------AAS 86
Query: 154 SVLLEKAFGAREITLLNPIWIH--SKNTGKPFYAILHRVDVGIVIDLEPARTEDPALSIA 211
+ L A + +NPI + + + + F ILHR D ++++LEP D +
Sbjct: 87 AARLTHALHGGDPAAINPIRLDVVTPDGERAFNGILHRHDSIVILELEP---RDESRYTN 143
Query: 212 GAVQSQKLAVRAISQLQSLPGGDIKLLCDTVVESVRQLTGYDRVMVYRFHEDEHGEVVAE 271
+S ++A+R + LP C VR++TG+DR+ VY+F D G+V+AE
Sbjct: 144 EFFRSVRVAIRRLQTAADLPTA-----CWIAASEVRRITGFDRIKVYQFAADWSGQVIAE 198
Query: 272 SKRPDLEPYFGLHYPATDIPQASRFLFKQNRVRMIVDCHATPLCVIQD--EGLMQPLCLV 329
+ + H+P++DIP SR L+ N VR+I D P ++ D L P+ L
Sbjct: 199 DRDSGIPSLLDFHFPSSDIPAQSRALYTINPVRIIPDIGYRPSPLVPDINPRLGGPIDLS 258
Query: 330 GSTLRAPHGCHAQYMANMGSIASLALAVI 358
S LR+ H +YM NMG A+++++++
Sbjct: 259 FSVLRSVSPTHLEYMVNMGMHAAMSISIV 287
>pdb|4E04|A Chain A, Rpbphp2 Chromophore-binding Domain Crystallized By
Homologue-directed Mutagenesis.
pdb|4E04|B Chain B, Rpbphp2 Chromophore-binding Domain Crystallized By
Homologue-directed Mutagenesis
Length = 327
Score = 112 bits (280), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/269 (29%), Positives = 134/269 (49%), Gaps = 22/269 (8%)
Query: 94 GHIQPFGCTIAVDEATFRVIAYSENAGEMLGLAPQSVPNLEKQEILTIGTDVRTLFTSSS 153
G IQP G +A+ A ++A S+N E+ GLA ++ IG +F S +
Sbjct: 24 GAIQPHGLLLAL-AADMTIVAGSDNLPELTGLAIGAL----------IGRSAADVFDSET 72
Query: 154 SVLLEKAFGAREITLLNPIWI--HSKNTGKPFYAILHRVDVGIVIDLEPARTEDPALSIA 211
L A + PI + + + F HR D + ++LEP + +
Sbjct: 73 HNRLTIALAEPGAAVGAPIAVGFTMPDGERAFNGSWHRHDQLVFLELEPPQRD--VRYPQ 130
Query: 212 GAVQSQKLAVRAISQLQSLPGGDIKLLCDTVVESVRQLTGYDRVMVYRFHEDEHGEVVAE 271
+S + A+R + ++L C + VR++TG+DRVM+YRF D GEV+AE
Sbjct: 131 AFFRSVRSAIRRLQAAETLESA-----CAAAAQEVREITGFDRVMIYRFASDFSGEVIAE 185
Query: 272 SKRPDLEPYFGLHYPATDIPQASRFLFKQNRVRMIVDCHATPLCVIQD--EGLMQPLCLV 329
+ ++E Y GLH+PA+DIP +R L+ N VR+I D + P+ V D +P+ L
Sbjct: 186 DRCAEVESYLGLHFPASDIPAQARRLYTINPVRIIPDINYRPVPVTPDLNPRTGRPIDLS 245
Query: 330 GSTLRAPHGCHAQYMANMGSIASLALAVI 358
+ LR+ H +YM N+G +++++++
Sbjct: 246 FAILRSVSPVHLEYMRNIGMHGTMSISIL 274
>pdb|2O9B|A Chain A, Crystal Structure Of Bacteriophytochrome Chromophore
Binding Domain
pdb|2O9C|A Chain A, Crystal Structure Of Bacteriophytochrome Chromophore
Binding Domain At 1.45 Angstrom Resolution
Length = 342
Score = 100 bits (250), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 79/262 (30%), Positives = 122/262 (46%), Gaps = 25/262 (9%)
Query: 89 KIQRGGHIQPFGCTIAVDEATFRVIAYSENAGEMLGLAPQSVPNLEKQEILTIGTDVRTL 148
I G IQP G + D + V+ S NA LG P L Q + + +
Sbjct: 43 PIHIPGSIQPHGALLTADGHSGEVLQMSLNAATFLGQEPTV---LRGQTLAALLPEQWPA 99
Query: 149 FTSSSSVLLEKAFGAREITLLNPIWIHSKNTGKPFYAILHRVDVGIVIDLEPARTEDPAL 208
++ A R TL P H T +HRV ++++ EP D
Sbjct: 100 LQAALPPGCPDALQYRA-TLDWPAAGHLSLT-------VHRVGELLILEFEPTEAWD--- 148
Query: 209 SIAGAVQSQKLAVR-AISQLQSLPGGDIKLLCDTVVESVRQLTGYDRVMVYRFHEDEHGE 267
+ A+R A+ L+S P +++ L + ++VR+LTG+DRVM+Y+F D GE
Sbjct: 149 ------STGPHALRNAMFALESAP--NLRALAEVATQTVRELTGFDRVMLYKFAPDATGE 200
Query: 268 VVAESKRPDLEPYFGLHYPATDIPQASRFLFKQNRVRMIVDCHAT--PLCVIQDEGLMQP 325
V+AE++R L + G +PA+DIP +R L+ ++ +R+ D A PL + + P
Sbjct: 201 VIAEARREGLHAFLGHRFPASDIPAQARALYTRHLLRLTADTRAAAVPLDPVLNPQTNAP 260
Query: 326 LCLVGSTLRAPHGCHAQYMANM 347
L G+ LRA H QY+ NM
Sbjct: 261 TPLGGAVLRATSPMHMQYLRNM 282
>pdb|3S7Q|A Chain A, Crystal Structure Of A Monomeric Infrared Fluorescent
Deinococcus Radiodurans Bacteriophytochrome Chromophore
Binding Domain
Length = 343
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 78/262 (29%), Positives = 122/262 (46%), Gaps = 25/262 (9%)
Query: 89 KIQRGGHIQPFGCTIAVDEATFRVIAYSENAGEMLGLAPQSVPNLEKQEILTIGTDVRTL 148
I G IQP G + D + V+ S NA LG P L Q + + +
Sbjct: 42 PIHIPGSIQPHGALLTADGHSGEVLQMSLNAATFLGQEPTV---LRGQTLAALLPEQWPA 98
Query: 149 FTSSSSVLLEKAFGAREITLLNPIWIHSKNTGKPFYAILHRVDVGIVIDLEPARTEDPAL 208
++ A R TL P H T +HRV ++++ EP D
Sbjct: 99 LQAALPPGCPDALQYR-ATLDWPAAGHLSLT-------VHRVGELLILEFEPTEAWD--- 147
Query: 209 SIAGAVQSQKLAVR-AISQLQSLPGGDIKLLCDTVVESVRQLTGYDRVMVYRFHEDEHGE 267
+ A+R A+S L+S P +++ L + ++VR+LTG+DRVM+Y+F D GE
Sbjct: 148 ------STGPHALRNAMSALESAP--NLRALAEVATQTVRELTGFDRVMLYKFAPDATGE 199
Query: 268 VVAESKRPDLEPYFGLHYPATDIPQASRFLFKQNRVRMIVDCHAT--PLCVIQDEGLMQP 325
V+AE++R L + G +PA+ IP +R L+ ++ +R+ D A PL + + P
Sbjct: 200 VIAEARREGLHAFLGHRFPASHIPAQARALYTRHLLRLTADTRAAAVPLDPVLNPQTNAP 259
Query: 326 LCLVGSTLRAPHGCHAQYMANM 347
L G+ LRA H Q++ NM
Sbjct: 260 TPLGGAVLRATSPMHMQFLRNM 281
>pdb|3S7N|A Chain A, Crystal Structure Of The Alternate His 207 Conformation Of
The Infrared Fluorescent D207h Variant Of Deinococcus
Bacteriophytochrome Chromophore Binding Domain At 2.45
Angstrom Resolution
pdb|3S7O|A Chain A, Crystal Structure Of The Infrared Fluorescent D207h
Variant Of Deinococcus Bacteriophytochrome Chromophore
Binding Domain At 1.24 Angstrom Resolution
pdb|3S7P|A Chain A, Crystal Structure Of The Infrared Fluorescent D207h
Variant Of Deinococcus Bacteriophytochrome Chromophore
Binding Domain At 1.72 Angstrom Resolution
Length = 343
Score = 97.8 bits (242), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 78/262 (29%), Positives = 121/262 (46%), Gaps = 25/262 (9%)
Query: 89 KIQRGGHIQPFGCTIAVDEATFRVIAYSENAGEMLGLAPQSVPNLEKQEILTIGTDVRTL 148
I G IQP G + D + V+ S NA LG P L Q + + +
Sbjct: 42 PIHIPGSIQPHGALLTADGHSGEVLQMSLNAATFLGQEPTV---LRGQTLAALLPEQWPA 98
Query: 149 FTSSSSVLLEKAFGAREITLLNPIWIHSKNTGKPFYAILHRVDVGIVIDLEPARTEDPAL 208
++ A R TL P H T +HRV ++++ EP D
Sbjct: 99 LQAALPPGCPDALQYRA-TLDWPAAGHLSLT-------VHRVGELLILEFEPTEAWD--- 147
Query: 209 SIAGAVQSQKLAVR-AISQLQSLPGGDIKLLCDTVVESVRQLTGYDRVMVYRFHEDEHGE 267
+ A+R A+ L+S P +++ L + ++VR+LTG+DRVM+Y+F D GE
Sbjct: 148 ------STGPHALRNAMFALESAP--NLRALAEVATQTVRELTGFDRVMLYKFAPDATGE 199
Query: 268 VVAESKRPDLEPYFGLHYPATDIPQASRFLFKQNRVRMIVDCHAT--PLCVIQDEGLMQP 325
V+AE++R L + G +PA+ IP +R L+ ++ +R+ D A PL + + P
Sbjct: 200 VIAEARREGLHAFLGHRFPASHIPAQARALYTRHLLRLTADTRAAAVPLDPVLNPQTNAP 259
Query: 326 LCLVGSTLRAPHGCHAQYMANM 347
L G+ LRA H QY+ NM
Sbjct: 260 TPLGGAVLRATSPMHMQYLRNM 281
>pdb|1ZTU|A Chain A, Structure Of The Chromophore Binding Domain Of Bacterial
Phytochrome
Length = 341
Score = 94.7 bits (234), Expect = 2e-19, Method: Composition-based stats.
Identities = 76/256 (29%), Positives = 118/256 (46%), Gaps = 25/256 (9%)
Query: 94 GHIQPFGCTIAVDEATFRVIAYSENAGEMLGLAPQSVPNLEKQEILTIGTDVRTLFTSSS 153
G IQP G + D + V+ S NA LG P L Q + + + ++
Sbjct: 47 GSIQPHGALLTADGHSGEVLQMSLNAATFLGQEPTV---LRGQTLAALLPEQWPALQAAL 103
Query: 154 SVLLEKAFGAREITLLNPIWIHSKNTGKPFYAILHRVDVGIVIDLEPARTEDPALSIAGA 213
A R TL P H T +HRV ++++ EP D
Sbjct: 104 PPGCPDALQYRA-TLDWPAAGHLSLT-------VHRVGELLILEFEPTEAWD-------- 147
Query: 214 VQSQKLAVR-AISQLQSLPGGDIKLLCDTVVESVRQLTGYDRVMVYRFHEDEHGEVVAES 272
+ A+R A L+S P +++ L + ++VR+LTG+DRV +Y+F D GEV+AE+
Sbjct: 148 -STGPHALRNAXFALESAP--NLRALAEVATQTVRELTGFDRVXLYKFAPDATGEVIAEA 204
Query: 273 KRPDLEPYFGLHYPATDIPQASRFLFKQNRVRMIVDCH--ATPLCVIQDEGLMQPLCLVG 330
+R L + G +PA+DIP +R L+ ++ +R+ D A PL + + P L G
Sbjct: 205 RREGLHAFLGHRFPASDIPAQARALYTRHLLRLTADTRAAAVPLDPVLNTQTNAPTPLGG 264
Query: 331 STLRAPHGCHAQYMAN 346
+ LRA H QY+ N
Sbjct: 265 AVLRATSPXHXQYLRN 280
>pdb|2LB5|A Chain A, Refined Structural Basis For The Photoconversion Of A
Phytochrome To The Activated Far-Red Light-Absorbing
Form
pdb|2LB9|A Chain A, Refined Solution Structure Of A Cyanobacterial Phytochrome
Gaf Domain In The Red Light-Absorbing Ground State
(Corrected Pyrrole Ring Planarity)
Length = 208
Score = 79.7 bits (195), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 72/129 (55%), Gaps = 5/129 (3%)
Query: 234 DIKLLCDTVVESVRQLTGYDRVMVYRFHEDEHGEVVAESKRPDLEP-YFGLHYPATDIPQ 292
++ + VE VR G DRV VYRF + HG VVAE++ + P GL +PA DIP+
Sbjct: 30 ELDQILRATVEEVRAFLGTDRVKVYRFDPEGHGTVVAEARGGERLPSLLGLTFPAGDIPE 89
Query: 293 ASRFLFKQNRVRMIVDCHATPLCVIQDE--GLMQPLCLVGSTLRAP-HGCHAQYMANMGS 349
+R LF+ +VR+IVD A + Q E GL + L G L+ P CH Y+ +MG
Sbjct: 90 EARRLFRLAQVRVIVDVEAQSRSISQPESWGLSARVPL-GEPLQRPVDPCHVHYLKSMGV 148
Query: 350 IASLALAVI 358
+SL + ++
Sbjct: 149 ASSLVVPLM 157
>pdb|2K2N|A Chain A, Solution Structure Of A Cyanobacterial Phytochrome Gaf
Domain In The Red Light-Absorbing Ground State
pdb|2KLI|A Chain A, Structural Basis For The Photoconversion Of A Phytochrome
To The Activated Far-Red Light-Absorbing Form
pdb|2KOI|A Chain A, Refined Solution Structure Of A Cyanobacterial Phytochrome
Gaf Domain In The Red Light-Absorbing Ground State
Length = 172
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 69/120 (57%), Gaps = 5/120 (4%)
Query: 243 VESVRQLTGYDRVMVYRFHEDEHGEVVAESKRPDLEP-YFGLHYPATDIPQASRFLFKQN 301
VE VR G DRV VYRF + HG VVAE++ + P GL +PA DIP+ +R LF+
Sbjct: 9 VEEVRAFLGTDRVKVYRFDPEGHGTVVAEARGGERLPSLLGLTFPAGDIPEEARRLFRLA 68
Query: 302 RVRMIVDCHATPLCVIQDE--GLMQPLCLVGSTLRAP-HGCHAQYMANMGSIASLALAVI 358
+VR+IVD A + Q E GL + L G L+ P CH Y+ +MG +SL + ++
Sbjct: 69 QVRVIVDVEAQSRSISQPESWGLSARVPL-GEPLQRPVDPCHVHYLKSMGVASSLVVPLM 127
>pdb|3A0R|A Chain A, Crystal Structure Of Histidine Kinase Thka (Tm1359) In
Complex With Response Regulator Protein Trra (Tm1360)
Length = 349
Score = 50.8 bits (120), Expect = 4e-06, Method: Composition-based stats.
Identities = 61/224 (27%), Positives = 104/224 (46%), Gaps = 22/224 (9%)
Query: 882 AYICQEIKNPLSGVS-FTNSLLEATDLTEDQKQLLETSAACEKQMLKIIKDVDLESIEDG 940
A + EI+NP++ + F + + D E K+ + ++ I+K++ S E
Sbjct: 137 ARVAHEIRNPITIIGGFIMRMKKHLDDPETLKKYINIITNELSRLETIVKEILEYSKERQ 196
Query: 941 SLEFEKAEFLLGSVINAVVSQVMMLLRERNLQLIRDIPEEIKTLAVYGDQARIQQVLADF 1000
LEF EF L +I V +R+ N+ + E L V D+ RI+QVL
Sbjct: 197 VLEF--TEFNLNELIREVYVLFEEKIRKMNIDFCFETDNE--DLRVEADRTRIKQVL--- 249
Query: 1001 LLNMVRYSPSAEGWVEIHVRPTLKQSSEGQTIVHNEFRMVCPGEGLP-PELVQDMFHSSR 1059
+N+V+ + A G +K +SE ++ + R+ G P PE +++ S
Sbjct: 250 -INLVQNAIEATG-----ENGKIKITSED---MYTKVRVSVWNSGPPIPEELKEKIFSPF 300
Query: 1060 WMTQE---GLGLSMCRKILKLMNGEVQYIRESERCYFLIIFELP 1100
+ T+ GLGLS+CRKI++ +G + E + IFE+P
Sbjct: 301 FTTKTQGTGLGLSICRKIIEDEHGGKIWTENRENG-VVFIFEIP 343
>pdb|3SL2|A Chain A, Atp Forms A Stable Complex With The Essential Histidine
Kinase Walk (yycg) Domain
Length = 177
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 66/126 (52%), Gaps = 18/126 (14%)
Query: 965 LLRERNLQLIRDIPEEIKTLAVYGDQARIQQVLADFLLNMVRYSPSAEGWVEIHVRPTLK 1024
+ +E++++ IR++P+ + L V DQ +I QVL + + N ++YSP HV ++
Sbjct: 18 MTKEQHVEFIRNLPD--RDLYVEIDQDKITQVLDNIISNALKYSPEGG-----HVTFSID 70
Query: 1025 QSSEGQTIVHNEFRMVCPGEGLPPELVQDMFH--------SSRWMTQEGLGLSMCRKILK 1076
+ E + + + G G+P + V+ +F +R + GLGL++ +++++
Sbjct: 71 VNEEEELLY---ISVKDEGIGIPKKDVEKVFDRFYRVDKARTRKLGGTGLGLAIAKEMVQ 127
Query: 1077 LMNGEV 1082
G++
Sbjct: 128 AHGGDI 133
>pdb|3A0T|A Chain A, Catalytic Domain Of Histidine Kinase Thka (Tm1359) In
Complex With Adp And Mg Ion (Trigonal)
pdb|3A0W|A Chain A, Catalytic Domain Of Histidine Kinase Thka (Tm1359) For Mad
Phasing (Nucleotide Free Form 2, Orthorombic)
pdb|3A0W|B Chain B, Catalytic Domain Of Histidine Kinase Thka (Tm1359) For Mad
Phasing (Nucleotide Free Form 2, Orthorombic)
pdb|3A0X|A Chain A, Catalytic Domain Of Histidine Kinase Thka (Tm1359)
(Nucleotide Free Form 1: Ammomium Phosphate, Monoclinic)
pdb|3A0Y|A Chain A, Catalytic Domain Of Histidine Kinase Thka (Tm1359)
(Nucleotide Free Form 3: 1,2-Propanediol, Orthorombic)
pdb|3A0Y|B Chain B, Catalytic Domain Of Histidine Kinase Thka (Tm1359)
(Nucleotide Free Form 3: 1,2-Propanediol, Orthorombic)
pdb|3A0Z|A Chain A, Catalytic Domain Of Histidine Kinase Thka (Tm1359)
(Nucleotide Free Form 4: Isopropanol, Orthorombic)
pdb|3A0Z|B Chain B, Catalytic Domain Of Histidine Kinase Thka (Tm1359)
(Nucleotide Free Form 4: Isopropanol, Orthorombic)
Length = 152
Score = 41.2 bits (95), Expect = 0.004, Method: Composition-based stats.
Identities = 43/152 (28%), Positives = 76/152 (50%), Gaps = 19/152 (12%)
Query: 955 INAVVSQVMMLLRERNLQLIRDIPEEI--KTLAVYGDQARIQQVLADFLLNMVRYSPSAE 1012
+N ++ +V +L E+ ++ D E + L V D+ RI+QVL +N+V+ + A
Sbjct: 8 LNELIREVYVLFEEKIRKMNIDFCFETDNEDLRVEADRTRIKQVL----INLVQNAIEAT 63
Query: 1013 GWVEIHVRPTLKQSSEGQTIVHNEFRMVCPGEGLP-PELVQDMFHSSRWMTQE---GLGL 1068
G +K +SE ++ + R+ G P PE +++ S + T+ GLGL
Sbjct: 64 G-----ENGKIKITSED---MYTKVRVSVWNSGPPIPEELKEKIFSPFFTTKTQGTGLGL 115
Query: 1069 SMCRKILKLMNGEVQYIRESERCYFLIIFELP 1100
S+CRKI++ +G + E + IFE+P
Sbjct: 116 SICRKIIEDEHGGKIWTENRENG-VVFIFEIP 146
>pdb|1R62|A Chain A, Crystal Structure Of The C-terminal Domain Of The
Two-component System Transmitter Protein Nrii (ntrb)
Length = 160
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 69/140 (49%), Gaps = 18/140 (12%)
Query: 954 VINAVVSQVMMLLRERNLQLIRDIPEEIKTLAVYGDQARIQQVLADFLLNMVRYSPSAEG 1013
V VV+ V M L + N++LIRD + LA DQ I+QVL LN+VR + A G
Sbjct: 13 VAERVVTLVSMELPD-NVRLIRDYDPSLPELAHDPDQ--IEQVL----LNIVRNALQALG 65
Query: 1014 WVEIHVRPTLKQSSEGQTIVHNE-FRMVC------PGEGLPPELVQDMFHS--SRWMTQE 1064
+ L+ + Q +H E +R+ G G+PP L +F+ S
Sbjct: 66 PEGGEI--ILRTRTAFQLTLHGERYRLAARIDVEDNGPGIPPHLQDTLFYPMVSGREGGT 123
Query: 1065 GLGLSMCRKILKLMNGEVQY 1084
GLGLS+ R ++ +G++++
Sbjct: 124 GLGLSIARNLIDQHSGKIEF 143
>pdb|3DGE|A Chain A, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A Novel
Cis- Autophosphorylation Mechanism
pdb|3DGE|B Chain B, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A Novel
Cis- Autophosphorylation Mechanism
Length = 258
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 56/273 (20%), Positives = 115/273 (42%), Gaps = 43/273 (15%)
Query: 866 VQRQQEKKCFARLKEL--------AYICQEIKNPLSGV-SFTNSLLEATDLTEDQKQLLE 916
V+ E K RLK + A I E++ PL+ + ++ ++ + L E
Sbjct: 1 VENVTESKELERLKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNS---------LGE 51
Query: 917 TSAACEKQMLKIIKD------------VDLESIEDGSLEFEKAEFLLGSVINAVVSQVMM 964
+ K+ L++I D +D +E SL+ + + L ++ + V+ +
Sbjct: 52 LDLSTLKEFLEVIIDQSNHLENLLNELLDFSRLERKSLQINREKVDLCDLVESAVNAIKE 111
Query: 965 LLRERNLQLI--RDIPEEIKTLAVYGDQARIQQVLADFLLNMVRYSPSAEGWVEIHVRPT 1022
N+ ++ ++P ++ Y D RI+QVL + L N V+Y S + + +V+
Sbjct: 112 FASSHNVNVLFESNVPCPVEA---YIDPTRIRQVLLNLLNNGVKY--SKKDAPDKYVKVI 166
Query: 1023 LKQSSEGQTIVHNEFRMVCPGEGLPPELVQDMFHSSRWMTQE----GLGLSMCRKILKLM 1078
L + G I+ + + P + + + +T E GLGL++ ++I++L
Sbjct: 167 LDEKDGGVLIIVEDNGIGIPDHA-KDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELH 225
Query: 1079 NGEVQYIRESERCYFLIIFELPMPRRGSKSITD 1111
G + E + ++ +P R G + D
Sbjct: 226 GGRIWVESEVGKGSRFFVW-IPKDRAGEDNRQD 257
>pdb|3D36|A Chain A, How To Switch Off A Histidine Kinase: Crystal Structure Of
Geobacillus Stearothermophilus Kinb With The Inhibitor
Sda
pdb|3D36|B Chain B, How To Switch Off A Histidine Kinase: Crystal Structure Of
Geobacillus Stearothermophilus Kinb With The Inhibitor
Sda
Length = 244
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 104/227 (45%), Gaps = 28/227 (12%)
Query: 882 AYICQEIKNPLSGVSFTNSLLEATDLTEDQKQLLETSAACEKQMLKI-IKDVD-LESIED 939
A I EI+NPL+ L+E L D++ +Q +I I+++D E+I
Sbjct: 19 ASISHEIRNPLTAARGFIQLIEEQPLAADKR----------RQYARIAIEELDRAEAIIT 68
Query: 940 GSLEFEKAEFLLGSVINAV--VSQVMMLLRERNLQLIRDIPEEIKTLAVYGDQARIQQVL 997
L F K +N + +V+ +LR DI + +V G++ + +Q L
Sbjct: 69 DYLTFAKPAPETPEKLNVKLEIERVIDILRPLANMSCVDIQATLAPFSVIGEREKFRQCL 128
Query: 998 ADFLLNMVRYSPSAEGWVEIHVRPTLKQSSEGQTIVHNEFRMVCPGEGLPPELVQDM--- 1054
+ + N + P+ G ++++V G+ ++ R+ G G+ E ++ +
Sbjct: 129 LNVMKNAIEAMPNG-GTLQVYV-----SIDNGRVLI----RIADTGVGMTKEQLERLGEP 178
Query: 1055 FHSSRWMTQEGLGLSMCRKILKLMNGEVQYIRESERCYFLIIFELPM 1101
+ +++ + GLG+ + +I++ MNG ++ E + + I+ LP+
Sbjct: 179 YFTTKGVKGTGLGMMVVYRIIESMNGTIRIESEIHKGTTVSIY-LPL 224
>pdb|2C2A|A Chain A, Structure Of The Entire Cytoplasmic Portion Of A Sensor
Histidine Kinase Protein
Length = 258
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 55/268 (20%), Positives = 113/268 (42%), Gaps = 43/268 (16%)
Query: 871 EKKCFARLKEL--------AYICQEIKNPLSGV-SFTNSLLEATDLTEDQKQLLETSAAC 921
E K RLK + A I E++ PL+ + ++ ++ + L E +
Sbjct: 6 ESKELERLKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNS---------LGELDLST 56
Query: 922 EKQMLKIIKD------------VDLESIEDGSLEFEKAEFLLGSVINAVVSQVMMLLRER 969
K+ L++I D +D +E SL+ + + L ++ + V+ +
Sbjct: 57 LKEFLEVIIDQSNHLENLLNELLDFSRLERKSLQINREKVDLCDLVESAVNAIKEFASSH 116
Query: 970 NLQLI--RDIPEEIKTLAVYGDQARIQQVLADFLLNMVRYSPSAEGWVEIHVRPTLKQSS 1027
N+ ++ ++P ++ Y D RI+QVL + L N V+Y S + + +V+ L +
Sbjct: 117 NVNVLFESNVPCPVEA---YIDPTRIRQVLLNLLNNGVKY--SKKDAPDKYVKVILDEKD 171
Query: 1028 EGQTIVHNEFRMVCPGEGLPPELVQDMFHSSRWMTQE----GLGLSMCRKILKLMNGEVQ 1083
G I+ + + P + + + +T E GLGL++ ++I++L G +
Sbjct: 172 GGVLIIVEDNGIGIPDHA-KDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIW 230
Query: 1084 YIRESERCYFLIIFELPMPRRGSKSITD 1111
E + ++ +P R G + D
Sbjct: 231 VESEVGKGSRFFVW-IPKDRAGEDNRQD 257
>pdb|3W2Z|A Chain A, Crystal Structure Of The Cyanobacterial Protein
Length = 198
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 234 DIKLLCDTVVESVRQLTGYDRVMVYRFHEDEHGEVVAES 272
+I + T + +RQL DRV VYRF+ D GE VAES
Sbjct: 35 NIDKIFQTTTQEIRQLLKCDRVAVYRFNPDWSGEFVAES 73
>pdb|3VV4|A Chain A, Crystal Structure Of Cyanobacteriochrome Tepixj Gaf Domain
pdb|3VV4|B Chain B, Crystal Structure Of Cyanobacteriochrome Tepixj Gaf Domain
Length = 196
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 234 DIKLLCDTVVESVRQLTGYDRVMVYRFHEDEHGEVVAES 272
D + + +T+V R+L DRV+VY F ++ G VVAES
Sbjct: 44 DRQAIFETLVAKGRELLACDRVIVYAFDDNYVGTVVAES 82
>pdb|4FOF|A Chain A, Crystal Structure Of The Blue-light Absorbing Form Of The
Thermosynechococcus Elongatus Pixj Gaf-domain
pdb|4GLQ|A Chain A, Crystal Structure Of The Blue-light Absorbing Form Of The
Thermosynechococcus Elongatus Pixj Gaf-domain
Length = 171
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 234 DIKLLCDTVVESVRQLTGYDRVMVYRFHEDEHGEVVAES 272
D + + +T+V R+L DRV+VY F ++ G VVAES
Sbjct: 11 DRQAIFETLVAKGRELLACDRVIVYAFDDNYVGTVVAES 49
>pdb|1IWG|A Chain A, Crystal Structure Of Bacterial Multidrug Efflux
Transporter Acrb
pdb|2DHH|A Chain A, Crystal Structure Of A Multidrug Transporter Reveal A
Functionally Rotating Mechanism
pdb|2DHH|B Chain B, Crystal Structure Of A Multidrug Transporter Reveal A
Functionally Rotating Mechanism
pdb|2DHH|C Chain C, Crystal Structure Of A Multidrug Transporter Reveal A
Functionally Rotating Mechanism
pdb|2DR6|A Chain A, Crystal Structure Of A Multidrug Transporter Reveal A
Functionally Rotating Mechanism
pdb|2DR6|B Chain B, Crystal Structure Of A Multidrug Transporter Reveal A
Functionally Rotating Mechanism
pdb|2DR6|C Chain C, Crystal Structure Of A Multidrug Transporter Reveal A
Functionally Rotating Mechanism
pdb|2DRD|A Chain A, Crystal Structure Of A Multidrug Transporter Reveal A
Functionally Rotating Mechanism
pdb|2DRD|B Chain B, Crystal Structure Of A Multidrug Transporter Reveal A
Functionally Rotating Mechanism
pdb|2DRD|C Chain C, Crystal Structure Of A Multidrug Transporter Reveal A
Functionally Rotating Mechanism
pdb|3AOA|A Chain A, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOA|B Chain B, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOA|C Chain C, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOB|A Chain A, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOB|B Chain B, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOB|C Chain C, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOC|A Chain A, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOC|B Chain B, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOC|C Chain C, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOD|A Chain A, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOD|B Chain B, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
pdb|3AOD|C Chain C, Structures Of The Multidrug Exporter Acrb Reveal A
Proximal Multisite Drug-Binding Pocket
Length = 1053
Score = 31.2 bits (69), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 215 QSQKLAVRAISQLQSLPGGDIKLLCDTVVESVRQ-LTGYDRVMVYRFHEDEHGEV 268
Q +A A++ S PG D K + DTV + + Q + G D +M + D G V
Sbjct: 34 QYPTIAPPAVTISASYPGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTV 88
>pdb|4DX6|A Chain A, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|B Chain B, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|C Chain C, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 1057
Score = 31.2 bits (69), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 215 QSQKLAVRAISQLQSLPGGDIKLLCDTVVESVRQ-LTGYDRVMVYRFHEDEHGEV 268
Q +A A++ S PG D K + DTV + + Q + G D +M + D G V
Sbjct: 34 QYPTIAPPAVTISASYPGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTV 88
>pdb|2HQF|A Chain A, Conformation Of The Acrb Multidrug Efflux Pump In Mutants
Of The Putative Proton Relay Pathway
Length = 1053
Score = 31.2 bits (69), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 215 QSQKLAVRAISQLQSLPGGDIKLLCDTVVESVRQ-LTGYDRVMVYRFHEDEHGEV 268
Q +A A++ S PG D K + DTV + + Q + G D +M + D G V
Sbjct: 34 QYPTIAPPAVTISASYPGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTV 88
>pdb|2HQG|A Chain A, Conformation Of The Acrb Multidrug Efflux Pump In Mutants
Of The Putative Proton Relay Pathway
Length = 1053
Score = 31.2 bits (69), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 215 QSQKLAVRAISQLQSLPGGDIKLLCDTVVESVRQ-LTGYDRVMVYRFHEDEHGEV 268
Q +A A++ S PG D K + DTV + + Q + G D +M + D G V
Sbjct: 34 QYPTIAPPAVTISASYPGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTV 88
>pdb|3NOC|A Chain A, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|B Chain B, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|C Chain C, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|A Chain A, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|B Chain B, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|C Chain C, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 1049
Score = 31.2 bits (69), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 215 QSQKLAVRAISQLQSLPGGDIKLLCDTVVESVRQ-LTGYDRVMVYRFHEDEHGEV 268
Q +A A++ S PG D K + DTV + + Q + G D +M + D G V
Sbjct: 34 QYPTIAPPAVTISASYPGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTV 88
>pdb|2HQD|A Chain A, Conformation Of The Acrb Multidrug Efflux Pump In Mutants
Of The Putative Proton Relay Pathway
Length = 1053
Score = 31.2 bits (69), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 215 QSQKLAVRAISQLQSLPGGDIKLLCDTVVESVRQ-LTGYDRVMVYRFHEDEHGEV 268
Q +A A++ S PG D K + DTV + + Q + G D +M + D G V
Sbjct: 34 QYPTIAPPAVTISASYPGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTV 88
>pdb|2HQC|A Chain A, Conformation Of The Acrb Multidrug Efflux Pump In Mutants
Of The Putative Proton Relay Pathway
Length = 1053
Score = 31.2 bits (69), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 215 QSQKLAVRAISQLQSLPGGDIKLLCDTVVESVRQ-LTGYDRVMVYRFHEDEHGEV 268
Q +A A++ S PG D K + DTV + + Q + G D +M + D G V
Sbjct: 34 QYPTIAPPAVTISASYPGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTV 88
>pdb|2J8S|A Chain A, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|B Chain B, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|C Chain C, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
Length = 1055
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 215 QSQKLAVRAISQLQSLPGGDIKLLCDTVVESVRQ-LTGYDRVMVYRFHEDEHGEV 268
Q +A A++ S PG D K + DTV + + Q + G D +M + D G V
Sbjct: 34 QYPTIAPPAVTISASYPGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTV 88
>pdb|2GIF|A Chain A, Asymmetric Structure Of Trimeric Acrb From Escherichia
Coli
pdb|2GIF|B Chain B, Asymmetric Structure Of Trimeric Acrb From Escherichia
Coli
pdb|2GIF|C Chain C, Asymmetric Structure Of Trimeric Acrb From Escherichia
Coli
pdb|2HRT|A Chain A, Asymmetric Structure Of Trimeric Acrb From Escherichia
Coli
pdb|2HRT|B Chain B, Asymmetric Structure Of Trimeric Acrb From Escherichia
Coli
pdb|2HRT|C Chain C, Asymmetric Structure Of Trimeric Acrb From Escherichia
Coli
pdb|2HRT|D Chain D, Asymmetric Structure Of Trimeric Acrb From Escherichia
Coli
pdb|2HRT|E Chain E, Asymmetric Structure Of Trimeric Acrb From Escherichia
Coli
pdb|2HRT|F Chain F, Asymmetric Structure Of Trimeric Acrb From Escherichia
Coli
pdb|4DX5|A Chain A, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|B Chain B, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|C Chain C, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|A Chain A, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|B Chain B, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|C Chain C, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 1057
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 215 QSQKLAVRAISQLQSLPGGDIKLLCDTVVESVRQ-LTGYDRVMVYRFHEDEHGEV 268
Q +A A++ S PG D K + DTV + + Q + G D +M + D G V
Sbjct: 34 QYPTIAPPAVTISASYPGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTV 88
>pdb|1OY6|A Chain A, Structural Basis Of The Multiple Binding Capacity Of The
Acrb Multidrug Efflux Pump
pdb|1OY8|A Chain A, Structural Basis Of Multiple Drug Binding Capacity Of The
Acrb Multidrug Efflux Pump
pdb|1OY9|A Chain A, Structural Basis Of Multiple Drug Binding Capacity Of The
Acrb Multidrug Efflux Pump
pdb|1OYD|A Chain A, Structural Basis Of Multiple Binding Capacity Of The Acrb
Multidrug Efflux Pump
pdb|1OYE|A Chain A, Structural Basis Of Multiple Binding Capacity Of The Acrb
Multidrug Efflux Pump
pdb|2I6W|A Chain A, Crystal Structure Of The Multidrug Efflux Transporter Acrb
pdb|2RDD|A Chain A, X-Ray Crystal Structure Of Acrb In Complex With A Novel
Transmembrane Helix.
pdb|3D9B|A Chain A, Symmetric Structure Of E. Coli Acrb
pdb|2W1B|A Chain A, The Structure Of The Efflux Pump Acrb In Complex With Bile
Acid
Length = 1049
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 215 QSQKLAVRAISQLQSLPGGDIKLLCDTVVESVRQ-LTGYDRVMVYRFHEDEHGEV 268
Q +A A++ S PG D K + DTV + + Q + G D +M + D G V
Sbjct: 34 QYPTIAPPAVTISASYPGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTV 88
>pdb|1T9T|A Chain A, Structural Basis Of Multidrug Transport By The Acrb
Multidrug Efflux Pump
pdb|1T9U|A Chain A, Structural Basis Of Multidrug Transport By The Acrb
Multidrug Efflux Pump
pdb|1T9V|A Chain A, Structural Basis Of Multidrug Transport By The Acrb
Multidrug Efflux Pump
pdb|1T9W|A Chain A, Structural Basis Of Multidrug Transport By The Acrb
Multidrug Efflux Pump
pdb|1T9X|A Chain A, Structural Basis Of Multidrug Transport By The Acrb
Multidrug Efflux Pump
pdb|1T9Y|A Chain A, Structural Basis Of Multidrug Transport By The Acrb
Multidrug Efflux Pump
Length = 1049
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 215 QSQKLAVRAISQLQSLPGGDIKLLCDTVVESVRQ-LTGYDRVMVYRFHEDEHGEV 268
Q +A A++ S PG D K + DTV + + Q + G D +M + D G V
Sbjct: 34 QYPTIAPPAVTISASYPGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTV 88
>pdb|2NXW|A Chain A, Crystal Structure Of Phenylpyruvate Decarboxylase Of
Azospirillum Brasilense
pdb|2NXW|B Chain B, Crystal Structure Of Phenylpyruvate Decarboxylase Of
Azospirillum Brasilense
pdb|2Q5J|A Chain A, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp
pdb|2Q5J|B Chain B, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp
pdb|2Q5L|A Chain A, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 2-(1- Hydroxyethyl)-3-Deaza-Thdp
pdb|2Q5L|B Chain B, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 2-(1- Hydroxyethyl)-3-Deaza-Thdp
pdb|2Q5O|A Chain A, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp And Phenylpyruvate
pdb|2Q5O|B Chain B, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp And Phenylpyruvate
pdb|2Q5Q|A Chain A, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp And 5-Phenyl-2-Oxo-Valeric Acid
pdb|2Q5Q|B Chain B, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp And 5-Phenyl-2-Oxo-Valeric Acid
Length = 565
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 596 DELSSVAREMVRLIETATAPIFAVDVHGCVNGWNAKVAELT---GLSVEEA-MGKSLVHD 651
D L++ A E++ + +AT+P+ V V G AKVAEL G+ V MG+ L+ D
Sbjct: 206 DALAACADEVLAAMRSATSPVLMVCVEVRRYGLEAKVAELAQRLGVPVVTTFMGRGLLAD 265
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,218,815
Number of Sequences: 62578
Number of extensions: 1287690
Number of successful extensions: 3055
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 2998
Number of HSP's gapped (non-prelim): 43
length of query: 1111
length of database: 14,973,337
effective HSP length: 109
effective length of query: 1002
effective length of database: 8,152,335
effective search space: 8168639670
effective search space used: 8168639670
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)