Query 037299
Match_columns 1111
No_of_seqs 617 out of 3735
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 18:29:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037299.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037299hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4eho_A Bacteriophytochrome, PA 100.0 3E-111 1E-115 1040.8 40.2 589 88-726 23-635 (635)
2 3zq5_A Phytochrome-like protei 100.0 6E-107 2E-111 954.3 33.3 467 88-572 18-509 (520)
3 3nhq_A Bacteriophytochrome; ph 100.0 1E-103 4E-108 924.7 46.8 452 88-570 15-492 (505)
4 4e04_A Bacteriophytochrome (li 100.0 5.2E-72 1.8E-76 618.2 27.8 271 88-376 18-293 (327)
5 3s7o_A Bacteriophytochrome; bi 100.0 2.1E-72 7.2E-77 621.8 24.4 265 88-376 41-311 (343)
6 2ool_A Sensor protein; bacteri 100.0 1.1E-68 3.8E-73 599.9 29.8 270 88-376 31-306 (337)
7 3a0r_A Sensor protein; four he 100.0 4.1E-40 1.4E-44 378.8 24.1 336 729-1099 3-344 (349)
8 2c2a_A Sensor histidine kinase 100.0 6.1E-32 2.1E-36 297.5 29.7 233 854-1103 2-249 (258)
9 4ew8_A Sensor protein DIVL; si 100.0 1.7E-29 5.9E-34 279.3 31.9 223 870-1106 33-260 (268)
10 4fpp_A Phosphotransferase; fou 100.0 2.9E-30 9.8E-35 282.3 21.7 226 843-1098 17-246 (247)
11 3jz3_A Sensor protein QSEC; he 100.0 1E-29 3.5E-34 272.4 11.9 211 877-1104 2-219 (222)
12 3d36_A Sporulation kinase B; G 100.0 1.4E-27 4.7E-32 259.7 25.8 209 874-1100 11-225 (244)
13 1gkz_A [3-methyl-2-oxobutanoat 100.0 9.3E-28 3.2E-32 280.3 25.1 216 872-1104 116-375 (388)
14 4glq_A Methyl-accepting chemot 100.0 9.1E-30 3.1E-34 261.6 4.9 129 224-376 3-133 (171)
15 2btz_A Pyruvate dehydrogenase 99.9 1.3E-26 4.5E-31 271.0 26.3 210 879-1103 97-351 (394)
16 2e0a_A Pyruvate dehydrogenase 99.9 2.3E-26 7.9E-31 268.9 26.8 207 878-1099 96-349 (394)
17 2q8g_A [pyruvate dehydrogenase 99.9 2.5E-26 8.6E-31 269.8 25.0 206 880-1099 108-362 (407)
18 1y8o_A [pyruvate dehydrogenase 99.9 1.2E-25 3.9E-30 264.9 22.6 205 881-1099 121-373 (419)
19 3ewk_A Sensor protein; PAS dom 99.9 5.2E-25 1.8E-29 237.1 24.2 221 615-855 1-227 (227)
20 3ehh_A Sensor kinase (YOCF pro 99.9 9E-22 3.1E-26 210.3 24.0 189 874-1100 25-216 (218)
21 2k2n_A Sensor protein, SYB-CPH 99.9 1E-22 3.5E-27 209.4 13.1 142 235-376 1-146 (172)
22 1b3q_A Protein (chemotaxis pro 99.9 2.6E-22 8.8E-27 232.8 17.1 194 875-1101 8-249 (379)
23 3a0y_A Sensor protein; ATP-LID 99.9 3E-21 1E-25 193.6 19.9 145 945-1103 2-149 (152)
24 1id0_A PHOQ histidine kinase; 99.9 9.5E-21 3.2E-25 190.1 19.8 141 947-1104 2-147 (152)
25 1ysr_A Sensor-type histidine k 99.9 6.3E-21 2.2E-25 191.2 17.9 138 945-1098 4-147 (150)
26 2lb5_A Sensor histidine kinase 99.9 2E-21 6.7E-26 206.2 13.1 160 215-376 13-176 (208)
27 1bxd_A ENVZ(290-450), protein 99.8 2.2E-20 7.5E-25 189.6 17.1 145 943-1105 4-155 (161)
28 1r62_A Nitrogen regulation pro 99.8 1.3E-20 4.4E-25 190.6 15.2 154 943-1099 2-158 (160)
29 3sl2_A Sensor histidine kinase 99.8 4.4E-20 1.5E-24 190.6 17.6 145 948-1103 2-155 (177)
30 1i58_A Chemotaxis protein CHEA 99.8 2.8E-19 9.6E-24 186.6 15.6 143 946-1099 2-188 (189)
31 3ehg_A Sensor kinase (YOCF pro 99.8 2.8E-18 9.6E-23 167.2 14.7 124 950-1100 3-126 (128)
32 4f3l_A Mclock, circadian locom 99.8 6.6E-18 2.3E-22 194.6 19.3 239 604-863 87-360 (361)
33 4f3l_B BMAL1B; BHLH, PAS, circ 99.7 1.7E-17 5.9E-22 192.7 16.8 235 605-861 88-386 (387)
34 3mr0_A Sensory box histidine k 99.7 1.1E-16 3.8E-21 158.1 15.5 138 596-738 2-141 (142)
35 3zxo_A Redox sensor histidine 99.7 1.5E-16 5.1E-21 154.8 14.0 124 946-1099 2-127 (129)
36 3zxq_A Hypoxia sensor histidin 99.6 1.6E-15 5.3E-20 146.5 15.6 121 950-1100 2-123 (124)
37 2pr5_A Blue-light photorecepto 99.6 6.6E-15 2.3E-19 143.0 14.8 127 606-739 2-131 (132)
38 2gj3_A Nitrogen fixation regul 99.6 6.7E-15 2.3E-19 140.4 13.3 117 602-723 4-120 (120)
39 3k3c_A Protein RV1364C/MT1410; 99.6 1.2E-14 4.2E-19 145.3 15.3 139 602-744 16-157 (158)
40 3rty_A Period circadian protei 99.6 1.8E-14 6.2E-19 162.9 18.2 223 615-858 5-263 (339)
41 4hia_A LOV protein; PAS, HTH, 99.6 1.9E-15 6.5E-20 154.3 8.7 126 602-732 6-134 (176)
42 3p7n_A Sensor histidine kinase 99.6 7.6E-15 2.6E-19 160.6 13.4 193 700-903 23-238 (258)
43 3p7n_A Sensor histidine kinase 99.6 3.3E-15 1.1E-19 163.5 10.0 175 593-779 53-232 (258)
44 3f1p_B ARYL hydrocarbon recept 99.6 9.7E-15 3.3E-19 139.2 11.2 115 605-724 4-120 (121)
45 3mr0_A Sensory box histidine k 99.5 2.2E-14 7.5E-19 141.5 12.8 137 727-872 2-138 (142)
46 3ue6_A Aureochrome1; PAS/LOV d 99.5 1.2E-14 4.2E-19 145.9 10.9 133 592-729 24-159 (166)
47 3nja_A Probable ggdef family p 99.5 2.8E-14 9.4E-19 135.1 12.1 122 598-724 2-125 (125)
48 1th8_A Anti-sigma F factor; SP 99.5 3.6E-14 1.2E-18 141.1 12.6 103 988-1106 35-143 (145)
49 3kx0_X Uncharacterized protein 99.5 1.4E-14 4.8E-19 150.0 9.4 141 600-745 34-182 (185)
50 3t50_A Blue-light-activated hi 99.5 4.8E-14 1.6E-18 134.9 12.0 123 608-735 2-127 (128)
51 1mu5_A Type II DNA topoisomera 99.5 4.8E-14 1.6E-18 165.8 12.7 110 986-1102 26-150 (471)
52 2zbk_B Type 2 DNA topoisomeras 99.5 4.4E-14 1.5E-18 167.9 12.1 111 985-1102 23-149 (530)
53 3mxq_A Sensor protein; PSI2, M 99.5 6.4E-14 2.2E-18 140.3 11.3 129 596-726 15-151 (152)
54 3f1p_A Endothelial PAS domain- 99.5 5.4E-14 1.8E-18 133.0 10.2 108 612-724 8-116 (117)
55 1d06_A Nitrogen fixation regul 99.5 1.4E-13 4.7E-18 133.2 12.8 123 591-720 4-130 (130)
56 3h9w_A Diguanylate cyclase wit 99.5 1.4E-13 4.9E-18 129.8 11.9 112 612-727 2-114 (115)
57 3sw1_A Sensory box protein; li 99.5 3E-13 1E-17 135.3 13.5 132 602-738 24-158 (162)
58 2vv6_A FIXL, sensor protein FI 99.5 2.3E-13 7.7E-18 129.4 11.5 114 611-731 1-118 (119)
59 2gj3_A Nitrogen fixation regul 99.4 2.5E-13 8.4E-18 129.4 9.5 117 732-859 3-119 (120)
60 4dj3_A Period circadian protei 99.4 1.5E-12 5.3E-17 145.6 17.2 225 608-856 31-279 (317)
61 3mqq_A Transcriptional regulat 99.4 4.3E-13 1.5E-17 127.5 10.7 115 604-725 4-119 (120)
62 3lyx_A Sensory BOX/ggdef domai 99.4 1.1E-12 3.9E-17 122.4 13.5 119 601-724 5-123 (124)
63 4dj2_A Period circadian protei 99.4 1.9E-12 6.3E-17 145.2 17.2 225 608-857 31-281 (320)
64 3luq_A Sensor protein; PAS, hi 99.4 8.2E-13 2.8E-17 122.8 12.1 113 602-720 2-114 (114)
65 3f1p_B ARYL hydrocarbon recept 99.4 3.2E-13 1.1E-17 128.6 9.2 115 736-861 4-120 (121)
66 4eet_B Phototropin-2; LOV, blu 99.4 1.3E-12 4.3E-17 121.5 12.7 111 608-723 2-115 (115)
67 2z6d_A Phototropin-2; PAS-fold 99.4 1.8E-12 6.3E-17 121.9 13.7 124 600-728 3-129 (130)
68 2v0u_A NPH1-1, LOV2; kinase, t 99.4 9.7E-13 3.3E-17 127.0 11.9 134 605-744 4-140 (146)
69 3ue6_A Aureochrome1; PAS/LOV d 99.4 4.2E-13 1.4E-17 134.7 9.2 136 719-865 20-158 (166)
70 2r78_A Sensor protein; sensory 99.4 2.5E-12 8.6E-17 122.1 14.0 113 597-720 5-117 (117)
71 3eeh_A Putative light and redo 99.4 1.5E-12 5.3E-17 122.1 12.0 121 594-720 2-125 (125)
72 1n9l_A PHOT-LOV1, putative blu 99.4 2.3E-12 7.9E-17 120.8 12.5 105 612-721 2-109 (109)
73 3nja_A Probable ggdef family p 99.4 7.1E-13 2.4E-17 125.3 8.9 124 729-861 2-125 (125)
74 3icy_A Sensor protein; sensory 99.4 1E-12 3.6E-17 123.3 9.9 116 601-720 2-118 (118)
75 4hia_A LOV protein; PAS, HTH, 99.4 1.3E-12 4.4E-17 133.1 11.1 123 732-865 5-130 (176)
76 2pr5_A Blue-light photorecepto 99.4 2.4E-12 8.1E-17 124.8 11.9 121 738-871 3-126 (132)
77 3gdi_A Period circadian protei 99.4 3E-12 1E-16 142.8 14.2 225 607-857 19-270 (309)
78 1d06_A Nitrogen fixation regul 99.4 2.3E-12 8E-17 124.5 11.1 125 720-857 2-130 (130)
79 3bwl_A Sensor protein; structu 99.3 5.2E-12 1.8E-16 120.6 12.3 124 718-857 1-126 (126)
80 3bwl_A Sensor protein; structu 99.3 2.2E-11 7.5E-16 116.3 15.8 120 591-720 5-126 (126)
81 1v9y_A Heme PAS sensor protein 99.3 3.8E-12 1.3E-16 127.3 10.6 134 591-731 28-165 (167)
82 3icy_A Sensor protein; sensory 99.3 5.7E-12 1.9E-16 118.2 11.2 117 732-857 2-118 (118)
83 3mjq_A Uncharacterized protein 99.3 3.6E-12 1.2E-16 120.9 9.8 121 605-733 1-121 (126)
84 3f1p_A Endothelial PAS domain- 99.3 9.2E-13 3.2E-17 124.4 5.5 106 748-861 10-116 (117)
85 2wkq_A NPH1-1, RAS-related C3 99.3 1.1E-11 3.7E-16 140.8 13.9 121 606-731 14-137 (332)
86 2q2e_B Type 2 DNA topoisomeras 99.3 3.6E-12 1.2E-16 153.3 10.2 108 986-1103 31-155 (621)
87 3h9w_A Diguanylate cyclase wit 99.3 3.9E-12 1.3E-16 119.8 8.3 110 748-864 4-114 (115)
88 3k3c_A Protein RV1364C/MT1410; 99.3 3.8E-12 1.3E-16 127.0 8.0 127 730-869 13-145 (158)
89 2kdk_A ARYL hydrocarbon recept 99.3 1.1E-11 3.6E-16 117.6 10.4 112 607-723 7-120 (121)
90 3t50_A Blue-light-activated hi 99.3 8.5E-12 2.9E-16 119.1 9.3 113 747-867 7-122 (128)
91 3eeh_A Putative light and redo 99.3 1.3E-11 4.4E-16 115.8 9.6 124 724-857 1-125 (125)
92 3luq_A Sensor protein; PAS, hi 99.2 2E-11 7E-16 113.2 9.9 113 733-857 2-114 (114)
93 3lyx_A Sensory BOX/ggdef domai 99.2 2.9E-11 9.9E-16 112.7 9.9 120 731-861 4-123 (124)
94 1n9l_A PHOT-LOV1, putative blu 99.2 1.9E-11 6.6E-16 114.5 8.4 104 747-858 3-109 (109)
95 3sw1_A Sensory box protein; li 99.2 1.6E-11 5.6E-16 122.5 8.3 130 731-871 22-154 (162)
96 3olo_A Two-component sensor hi 99.2 4.2E-11 1.4E-15 112.1 10.6 111 598-720 8-118 (118)
97 3fc7_A HTR-like protein, senso 99.2 1.9E-11 6.4E-16 116.0 7.9 108 601-720 17-125 (125)
98 3vol_A Aerotaxis transducer AE 99.2 1.4E-10 4.7E-15 124.9 15.5 151 601-780 20-183 (233)
99 2r78_A Sensor protein; sensory 99.2 2.6E-11 9.1E-16 115.0 7.8 114 727-857 4-117 (117)
100 3mqq_A Transcriptional regulat 99.2 1.6E-11 5.4E-16 116.5 5.7 116 735-862 4-119 (120)
101 2v0u_A NPH1-1, LOV2; kinase, t 99.2 4.8E-11 1.6E-15 114.9 9.2 114 737-861 5-121 (146)
102 3ewk_A Sensor protein; PAS dom 99.2 1.4E-10 4.9E-15 123.9 13.5 111 603-718 111-227 (227)
103 2vv6_A FIXL, sensor protein FI 99.2 6.9E-11 2.4E-15 112.0 9.7 111 747-867 3-117 (119)
104 4eet_B Phototropin-2; LOV, blu 99.2 5.4E-11 1.8E-15 110.3 8.8 105 747-859 7-114 (115)
105 3mxq_A Sensor protein; PSI2, M 99.2 2.5E-11 8.6E-16 121.4 6.5 124 727-862 15-150 (152)
106 1v9y_A Heme PAS sensor protein 99.2 5.7E-11 2E-15 118.5 9.0 144 711-867 17-164 (167)
107 2z6d_A Phototropin-2; PAS-fold 99.1 5.7E-11 2E-15 111.5 8.2 123 731-864 3-128 (130)
108 2l0w_A Potassium voltage-gated 99.1 3.5E-10 1.2E-14 107.8 13.5 114 605-722 21-138 (138)
109 2qkp_A Uncharacterized protein 99.1 2E-10 6.9E-15 114.7 12.2 123 603-733 19-144 (151)
110 1byw_A Protein (human ERG pota 99.1 1.1E-09 3.9E-14 99.3 13.0 105 614-722 2-110 (110)
111 3mfx_A Sensory BOX/ggdef famil 99.1 4.1E-10 1.4E-14 109.4 10.2 115 603-721 7-124 (129)
112 2wkq_A NPH1-1, RAS-related C3 99.1 2.7E-10 9.3E-15 129.1 10.4 117 739-866 16-135 (332)
113 4f3l_A Mclock, circadian locom 99.0 5.4E-10 1.8E-14 128.5 12.2 110 612-726 250-360 (361)
114 4hi4_A Aerotaxis transducer AE 99.0 1.1E-09 3.8E-14 104.4 12.2 106 602-722 4-121 (121)
115 3kx0_X Uncharacterized protein 99.0 6.6E-11 2.3E-15 122.2 3.7 123 730-865 33-161 (185)
116 2kdk_A ARYL hydrocarbon recept 99.0 5.9E-10 2E-14 105.4 9.9 110 739-859 8-119 (121)
117 3fg8_A Uncharacterized protein 99.0 9E-11 3.1E-15 111.5 3.7 114 596-722 5-118 (118)
118 2vlg_A Sporulation kinase A; h 99.0 1.1E-09 3.7E-14 103.4 11.1 94 607-708 3-96 (111)
119 3vol_A Aerotaxis transducer AE 99.0 1.2E-09 4.2E-14 117.5 12.2 121 732-873 20-152 (233)
120 4f3l_B BMAL1B; BHLH, PAS, circ 99.0 1E-09 3.5E-14 127.2 12.3 109 611-724 276-386 (387)
121 3mjq_A Uncharacterized protein 99.0 3.8E-10 1.3E-14 106.7 6.4 118 737-868 2-119 (126)
122 3d72_A Vivid PAS protein VVD; 99.0 1.3E-09 4.4E-14 107.1 10.3 107 606-718 29-149 (149)
123 3olo_A Two-component sensor hi 98.9 1.3E-09 4.6E-14 101.7 7.9 114 726-857 5-118 (118)
124 3b33_A Sensor protein; structu 98.9 3.1E-09 1.1E-13 99.4 10.0 105 606-720 10-115 (115)
125 4eho_A Bacteriophytochrome, PA 98.9 2.2E-10 7.4E-15 141.4 1.6 121 730-862 514-634 (635)
126 2l0w_A Potassium voltage-gated 98.9 2.7E-09 9.3E-14 101.5 8.8 111 738-858 23-137 (138)
127 1byw_A Protein (human ERG pota 98.9 3.8E-09 1.3E-13 95.8 8.1 103 749-858 3-109 (110)
128 2ykf_A Pdtas, probable sensor 98.4 2.8E-10 9.5E-15 127.4 0.0 173 695-886 111-305 (305)
129 2w0n_A Sensor protein DCUS; si 98.9 1.1E-09 3.7E-14 102.2 4.1 109 595-720 7-118 (118)
130 3cax_A Uncharacterized protein 98.8 9.7E-09 3.3E-13 118.2 11.7 115 603-728 239-353 (369)
131 1ll8_A PAS kinase; PAS domain, 98.8 2.2E-09 7.7E-14 100.5 4.6 103 611-720 6-113 (114)
132 3a0r_A Sensor protein; four he 98.8 1.4E-09 4.7E-14 124.0 2.5 123 599-733 4-127 (349)
133 2vlg_A Sporulation kinase A; h 98.8 1.4E-08 4.9E-13 95.6 8.4 94 738-845 3-96 (111)
134 4hi4_A Aerotaxis transducer AE 98.8 2.1E-08 7.3E-13 95.4 9.7 105 734-859 5-121 (121)
135 3d72_A Vivid PAS protein VVD; 98.8 1.5E-08 5E-13 99.5 8.7 100 748-855 36-149 (149)
136 3fc7_A HTR-like protein, senso 98.7 4.6E-09 1.6E-13 99.2 3.9 108 732-857 17-125 (125)
137 2qkp_A Uncharacterized protein 98.7 1.9E-08 6.6E-13 100.3 7.5 119 733-865 18-139 (151)
138 3mfx_A Sensory BOX/ggdef famil 98.7 1.5E-08 5E-13 98.3 5.8 110 734-857 7-123 (129)
139 2jhe_A Transcription regulator 98.6 2.2E-08 7.5E-13 103.4 6.5 110 599-723 76-189 (190)
140 3a0s_A Sensor protein; PAS-fol 98.6 2.8E-07 9.5E-12 81.1 12.5 95 612-718 1-96 (96)
141 4dj3_A Period circadian protei 98.6 1.1E-07 3.7E-12 106.4 11.6 123 614-741 175-314 (317)
142 3fg8_A Uncharacterized protein 98.5 1.2E-08 4.2E-13 96.5 1.0 112 729-859 7-118 (118)
143 3rty_A Period circadian protei 98.5 3.5E-07 1.2E-11 103.3 12.7 106 612-722 153-264 (339)
144 1nwz_A PYP, photoactive yellow 98.5 4.4E-07 1.5E-11 86.3 10.2 103 606-714 20-122 (125)
145 2w0n_A Sensor protein DCUS; si 98.5 1.4E-07 4.8E-12 87.6 6.6 108 726-857 7-118 (118)
146 1ll8_A PAS kinase; PAS domain, 98.5 1E-07 3.6E-12 89.0 5.6 99 748-857 9-113 (114)
147 1mzu_A PPR; photoactive yellow 98.5 6E-07 2E-11 85.5 10.4 102 607-714 26-127 (129)
148 3b33_A Sensor protein; structu 98.5 1E-07 3.4E-12 89.0 5.0 105 737-857 10-115 (115)
149 3ke6_A Protein RV1364C/MT1410; 98.4 3.9E-07 1.3E-11 105.9 10.0 90 990-1101 295-387 (399)
150 4dj2_A Period circadian protei 98.3 2.8E-06 9.6E-11 95.0 12.7 104 613-721 176-282 (320)
151 3cax_A Uncharacterized protein 98.3 1E-06 3.5E-11 101.3 8.2 115 732-863 237-351 (369)
152 2ykf_A Pdtas, probable sensor 97.6 1.1E-07 3.8E-12 106.2 0.0 120 607-738 174-302 (305)
153 3gdi_A Period circadian protei 98.3 4E-06 1.4E-10 93.4 12.4 103 614-721 166-271 (309)
154 1nwz_A PYP, photoactive yellow 98.2 2.2E-06 7.4E-11 81.5 6.7 102 737-851 20-122 (125)
155 1mzu_A PPR; photoactive yellow 98.1 3E-06 1E-10 80.7 6.8 99 739-850 27-126 (129)
156 3p01_A Two-component response 98.1 1E-05 3.5E-10 82.8 11.6 129 216-376 28-158 (184)
157 3a0s_A Sensor protein; PAS-fol 98.1 2.7E-06 9.1E-11 74.6 5.9 94 747-855 2-96 (96)
158 2zmf_A CAMP and CAMP-inhibited 98.1 3.6E-05 1.2E-09 78.3 13.8 131 220-376 15-155 (189)
159 2jhe_A Transcription regulator 98.0 3E-06 1E-10 87.2 4.5 106 732-859 78-188 (190)
160 1ixm_A SPO0B, protein (sporula 98.0 3.8E-05 1.3E-09 79.1 12.2 142 878-1057 22-168 (192)
161 3na3_A DNA mismatch repair pro 98.0 2.2E-05 7.4E-10 88.1 11.1 80 992-1089 28-121 (348)
162 3oov_A Methyl-accepting chemot 98.0 4.6E-05 1.6E-09 75.9 12.5 122 225-367 9-130 (169)
163 1ykd_A Adenylate cyclase; GAF 98.0 0.00047 1.6E-08 79.6 22.4 303 220-571 11-374 (398)
164 1kij_A DNA gyrase subunit B; t 97.9 6.3E-06 2.2E-10 94.6 6.2 77 987-1078 31-127 (390)
165 1h7s_A PMS1 protein homolog 2; 97.9 1.5E-05 5.2E-10 90.6 9.2 70 992-1074 34-117 (365)
166 1b63_A MUTL; DNA mismatch repa 97.9 1.4E-05 4.8E-10 90.1 8.5 78 992-1087 24-115 (333)
167 3ibj_A CGMP-dependent 3',5'-cy 97.8 0.00046 1.6E-08 86.0 20.8 128 216-376 13-145 (691)
168 2e4s_A CAMP and CAMP-inhibited 97.7 0.00013 4.6E-09 74.1 10.9 124 217-367 12-144 (189)
169 1mc0_A 3',5'-cyclic nucleotide 97.7 0.00013 4.4E-09 83.3 11.8 128 218-376 14-145 (368)
170 3h4l_A DNA mismatch repair pro 97.7 7.3E-05 2.5E-09 84.6 9.2 79 992-1088 25-117 (367)
171 3k2n_A Sigma-54-dependent tran 97.6 0.00052 1.8E-08 69.0 14.1 128 217-367 5-135 (177)
172 2qyb_A Membrane protein, putat 97.6 0.00031 1E-08 71.1 11.6 111 232-367 15-126 (181)
173 3ci6_A Phosphoenolpyruvate-pro 97.6 0.00053 1.8E-08 67.7 13.2 124 217-367 9-132 (171)
174 3trc_A Phosphoenolpyruvate-pro 97.5 0.00061 2.1E-08 67.7 12.0 126 215-367 5-130 (171)
175 3e0y_A Conserved domain protei 97.5 0.00074 2.5E-08 67.7 12.2 118 221-367 18-135 (181)
176 1mc0_A 3',5'-cyclic nucleotide 97.4 0.00098 3.3E-08 75.9 13.0 114 225-367 188-305 (368)
177 3hcy_A Putative two-component 97.2 0.00062 2.1E-08 66.6 7.8 107 232-367 1-108 (151)
178 2wer_A ATP-dependent molecular 97.1 0.00016 5.6E-09 76.3 2.6 54 995-1057 29-95 (220)
179 3o5y_A Sensor protein; GAF dom 97.0 0.003 1E-07 63.4 11.1 107 233-367 4-112 (165)
180 1qy5_A Endoplasmin; GRP94, NEC 96.9 0.00016 5.4E-09 78.3 0.5 53 995-1056 31-96 (269)
181 2vjw_A GAF-B, GAF family prote 96.8 0.0054 1.9E-07 60.3 10.6 98 234-367 1-102 (149)
182 3ibj_A CGMP-dependent 3',5'-cy 96.8 0.0054 1.9E-07 76.3 13.1 130 233-389 195-338 (691)
183 1s16_A Topoisomerase IV subuni 96.8 0.0026 9.1E-08 72.7 9.1 70 994-1075 33-123 (390)
184 1ei1_A DNA gyrase B, GYRB; ATP 96.6 0.0045 1.5E-07 70.7 9.3 73 992-1076 34-127 (391)
185 1oj5_A Steroid receptor coacti 96.5 0.0033 1.1E-07 59.5 6.1 96 614-715 8-108 (132)
186 2w3g_A DOSS, two component sen 96.5 0.0025 8.7E-08 61.7 5.4 109 232-367 4-113 (153)
187 3zcc_A HAMP, osmolarity sensor 96.4 0.0066 2.3E-07 55.8 7.7 56 872-932 55-110 (114)
188 1yc1_A HSP 86, heat shock prot 96.4 0.0037 1.3E-07 67.4 6.7 72 995-1075 71-173 (264)
189 3fv5_A DNA topoisomerase 4 sub 96.4 0.006 2.1E-07 63.1 7.9 46 994-1051 19-65 (201)
190 1ykd_A Adenylate cyclase; GAF 96.4 0.02 6.8E-07 65.8 13.3 109 233-367 213-325 (398)
191 2ior_A Chaperone protein HTPG; 96.3 0.0065 2.2E-07 64.6 7.5 52 995-1057 50-116 (235)
192 3dba_A CONE CGMP-specific 3',5 96.2 0.013 4.5E-07 59.3 9.6 124 218-367 7-141 (180)
193 4duh_A DNA gyrase subunit B; s 96.1 0.01 3.4E-07 62.2 7.9 73 991-1075 34-127 (220)
194 1zxm_A TOPO IIA ATPase, DNA to 96.0 0.015 5.2E-07 66.4 9.1 74 990-1074 50-145 (400)
195 4emv_A DNA topoisomerase IV, B 95.9 0.011 3.9E-07 62.0 6.9 73 990-1074 38-130 (226)
196 3cwv_A DNA gyrase, B subunit, 95.7 0.032 1.1E-06 63.1 10.2 49 989-1049 27-76 (369)
197 1pvg_A DNA topoisomerase II; G 95.6 0.026 8.7E-07 64.9 9.3 73 991-1075 63-158 (418)
198 3bjc_A CGMP-specific 3',5'-cyc 95.5 0.0025 8.4E-08 81.5 0.0 123 219-367 154-285 (878)
199 3t0h_A Heat shock protein HSP 95.2 0.0068 2.3E-07 63.8 2.3 54 995-1057 35-101 (228)
200 1oj5_A Steroid receptor coacti 94.9 0.011 3.8E-07 55.8 2.6 99 750-857 10-113 (132)
201 3ttz_A DNA gyrase subunit B; p 94.7 0.076 2.6E-06 54.6 8.6 50 989-1050 28-78 (198)
202 2cg9_A ATP-dependent molecular 94.6 0.038 1.3E-06 66.9 7.1 50 995-1055 29-93 (677)
203 3lnu_A Topoisomerase IV subuni 94.6 0.064 2.2E-06 61.1 8.5 70 994-1075 52-142 (408)
204 3zrx_A AF1503 protein, osmolar 94.6 0.097 3.3E-06 47.6 8.4 56 875-935 58-114 (115)
205 2o1u_A Endoplasmin; GRP94, HSP 94.5 0.02 6.8E-07 69.3 4.2 57 986-1056 42-113 (666)
206 2gqp_A Endoplasmin; GRP94, HSP 94.1 0.031 1.1E-06 59.3 4.2 51 995-1056 35-100 (236)
207 1y4s_A Chaperone protein HTPG; 93.9 0.065 2.2E-06 63.7 6.7 51 995-1056 30-95 (559)
208 3peh_A Endoplasmin homolog; st 93.5 0.026 9E-07 60.7 2.4 71 995-1074 49-151 (281)
209 3mmh_A FRMSR, methionine-R-sul 93.3 1.8 6.1E-05 43.1 15.2 117 216-367 14-131 (167)
210 3o0i_A HSP90AA1 protein; HSP90 92.7 0.031 1.1E-06 59.5 1.4 52 995-1055 63-127 (256)
211 3nmq_A Heat shock protein HSP 91.2 0.068 2.3E-06 56.3 1.8 49 995-1052 42-103 (239)
212 1vhm_A Protein YEBR; structura 90.2 2.2 7.5E-05 43.6 12.1 100 232-366 41-141 (195)
213 2ioq_A Chaperone protein HTPG; 90.1 0.21 7.1E-06 60.2 4.9 50 995-1055 30-94 (624)
214 4gfh_A DNA topoisomerase 2; to 88.0 0.67 2.3E-05 59.9 7.7 73 991-1074 58-152 (1177)
215 4dah_A Sporulation kinase D; a 84.8 8.2 0.00028 39.4 12.9 126 599-766 54-181 (217)
216 3bjc_A CGMP-specific 3',5'-cyc 84.7 0.18 6.3E-06 64.2 0.0 110 233-367 348-471 (878)
217 3ied_A Heat shock protein; HSP 84.4 0.3 1E-05 51.5 1.5 20 1036-1055 131-150 (272)
218 3ksh_A Putative uncharacterize 84.0 9.6 0.00033 37.4 12.1 114 217-366 15-129 (160)
219 3rfb_A Putative uncharacterize 81.7 12 0.0004 37.2 11.8 114 216-365 15-129 (171)
220 2ool_A Sensor protein; bacteri 80.8 2.8 9.6E-05 46.6 7.7 48 616-664 45-93 (337)
221 3e4o_A C4-dicarboxylate transp 78.1 33 0.0011 37.3 15.2 120 602-764 101-221 (305)
222 1f5m_A GAF; CGMP binding, sign 76.9 11 0.00039 37.5 10.2 113 232-349 39-171 (180)
223 3lif_A Putative diguanylate cy 76.1 27 0.00093 36.2 13.6 124 600-764 55-183 (254)
224 1p0z_A Sensor kinase CITA; tra 74.8 7.2 0.00025 36.6 7.6 77 614-721 51-127 (131)
225 3by8_A Sensor protein DCUS; hi 58.6 13 0.00045 35.4 5.9 79 614-724 57-135 (142)
226 4ew7_A Conjugative transfer: r 58.3 1E+02 0.0034 27.4 10.9 43 605-647 22-64 (127)
227 3lid_A Putative sensory BOX/gg 53.9 88 0.003 33.6 12.3 135 598-764 62-205 (295)
228 4ew7_A Conjugative transfer: r 47.2 1.5E+02 0.0051 26.3 9.8 93 736-843 22-114 (127)
229 4e04_A Bacteriophytochrome (li 44.9 17 0.00059 39.9 4.6 48 615-663 31-78 (327)
230 3nhq_A Bacteriophytochrome; ph 42.3 11 0.00036 44.3 2.5 38 222-261 324-361 (505)
231 3by8_A Sensor protein DCUS; hi 41.3 55 0.0019 30.9 7.2 27 832-858 106-132 (142)
232 1p0z_A Sensor kinase CITA; tra 40.9 48 0.0016 30.7 6.6 28 830-857 99-126 (131)
233 3c8c_A Methyl-accepting chemot 40.1 2.3E+02 0.0078 28.1 12.5 56 694-763 118-175 (240)
234 4dah_A Sporulation kinase D; a 39.6 52 0.0018 33.1 7.2 94 733-857 57-150 (217)
235 3by9_A Sensor protein; histidi 38.7 3.3E+02 0.011 27.6 13.9 108 614-764 73-180 (260)
236 3szt_A QCSR, quorum-sensing co 37.9 61 0.0021 33.6 7.5 114 223-360 8-121 (237)
237 3cit_A Sensor histidine kinase 34.1 92 0.0031 30.3 7.3 54 215-273 12-65 (160)
238 3lmm_A Uncharacterized protein 32.6 69 0.0024 38.2 7.6 94 995-1100 299-408 (583)
239 3s7o_A Bacteriophytochrome; bi 29.8 32 0.0011 38.0 3.7 46 615-662 54-100 (343)
240 3pxp_A Helix-turn-helix domain 27.7 75 0.0026 34.2 6.1 39 599-637 95-133 (292)
241 3qp6_A CVIR transcriptional re 26.7 2.3E+02 0.0079 29.7 9.8 123 217-360 21-147 (265)
242 3qp1_A CVIR transcriptional re 26.4 2.8E+02 0.0094 27.1 9.8 116 220-360 19-141 (182)
243 2hl0_A Threonyl-tRNA synthetas 24.5 71 0.0024 30.3 4.4 29 234-262 52-83 (143)
No 1
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=100.00 E-value=3.3e-111 Score=1040.79 Aligned_cols=589 Identities=26% Similarity=0.419 Sum_probs=506.1
Q ss_pred hhccCCCCCCccceEEEEeCCCceEEeeccchhhhhCCCCCCCCcchhhhhhhcCCchhhhcCchhHHHHHHHhcccccc
Q 037299 88 SKIQRGGHIQPFGCTIAVDEATFRVIAYSENAGEMLGLAPQSVPNLEKQEILTIGTDVRTLFTSSSSVLLEKAFGAREIT 167 (1111)
Q Consensus 88 ~~i~~~g~iQp~G~ll~~~~~~~~i~~~S~N~~~~lg~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (1111)
||||+||+|||||||||+|+++++|+++|+|+.++||+++ ++|+++.+++++.....+..... ..
T Consensus 23 EpIh~pg~IQp~G~Ll~~~~~~~~i~~~S~N~~~~lg~~~------------~lg~~l~~~~~~~~~~~~~~~~~---~~ 87 (635)
T 4eho_A 23 EEIHLAGSIQPHGALLVVSEPDHRIIQASANAAEFLNLGS------------VLGVPLAEIDGDLLIKILPHLDP---TA 87 (635)
T ss_dssp CBCSSCSEECTTEEEEEECTTTCBEEEEETTHHHHHTCSC------------CSSCBSSSSSSSHHHHHGGGCCS---SS
T ss_pred ccccCcCcccCCeEEEEEECCCCeEEEEeCcHHhhhCcHh------------hhCCCHHHHcchHHHHHHhhhhh---hc
Confidence 3499999999999999999999999999999999999753 58999999999887776654322 12
Q ss_pred cCCcEEEEec--CCCceEEEEEEEe-CCEEEEEeeeCCCCCCcchhhhhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 037299 168 LLNPIWIHSK--NTGKPFYAILHRV-DVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCDTVVE 244 (1111)
Q Consensus 168 ~~~~~~~~~~--~~~~~f~~~~h~~-~~~~i~e~E~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~~~~~ 244 (1111)
..+|+.+++. ..++.|++++||. ++.+|+||||..+.. ++ +.++.++|+||++ +.|+++||+++|+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~hr~~~~~li~elE~~~~~~---~~------~~~~~~~~~~i~~--s~~l~~i~~~~v~ 156 (635)
T 4eho_A 88 EGMPVAVRCRIGNPSTEYDGLMHRPPEGGLIIELERAGPPI---DL------SGTLAPALERIRT--AGSLRALCDDTAL 156 (635)
T ss_dssp CCCSCEEEEEETTTTEEEEEECCCCSSSSEEEEEECCCSCC---CC------CTTSSSHHHHHHH--CCSHHHHHHHHHH
T ss_pred cCCceeEEEEecCCCceEEEEEEEcCCCEEEEEEEECCCch---hH------HHHHHHHHHHHHh--hCCHHHHHHHHHH
Confidence 3356665544 4567899999995 578999999986532 22 2334678999999 7899999999999
Q ss_pred HHHHhhCCCeEEEEeecCCCCcEEEEEecCCCCCCccCCCCCCCCchHHHHHHHHhCCeeEeeccCCCcceeec--CCCC
Q 037299 245 SVRQLTGYDRVMVYRFHEDEHGEVVAESKRPDLEPYFGLHYPATDIPQASRFLFKQNRVRMIVDCHATPLCVIQ--DEGL 322 (1111)
Q Consensus 245 ~vr~~~g~DRVmiY~F~~d~~G~VvaE~~~~~~~~~lg~~~pa~dip~~ar~ly~~n~~r~i~d~~~~~~~~~~--~~~~ 322 (1111)
|||++|||||||||||++||||+||||++.++|+||||+||||+|||+|||+||++|++|+|+||+++||+|+| ++.+
T Consensus 157 evr~l~~~DRv~iy~F~~d~~G~vvaE~~~~~~~s~lg~~~p~~dip~~~r~ly~~~~~r~i~d~~~~~v~~~~~~~~~~ 236 (635)
T 4eho_A 157 LFQQCTGYDRVMVYRFDEQGHGEVFSERHVPGLESYFGNRYPSSDIPQMARRLYERQRVRVLVDVSYQPVPLEPRLSPLT 236 (635)
T ss_dssp HHHHHSCCSEEEEEEECTTCCEEEEEEECCTTCCCCTTCEECSTTSCHHHHHHHHHSCEEEESCSSCCCEEEESSBCTTT
T ss_pred HHHHHhCCCeEEEEEECCCCCEEEEEEEcCCCCccccCCccCCcchHHHHHHHHHcCCeEEEecccCCccccccCcCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998 5788
Q ss_pred CCcccccCccccCCChhHHHHHHhcCcceEEEEEEEEcCCCcccc-CCCCCccch-------------HhhHhhcHHHHH
Q 037299 323 MQPLCLVGSTLRAPHGCHAQYMANMGSIASLALAVIINGNDEEAV-GGRSTTRLW-------------AFGLQLNMELQL 388 (1111)
Q Consensus 323 ~~~ldls~~~lRsvsp~h~~yl~nmgv~asl~~~i~~~~~~~~~~-~~~~~~~LW-------------~~~~~~~~~~~~ 388 (1111)
++|||||+|+||++||||+|||+||||+|||||||+++|++||++ -++...+.| .|++++......
T Consensus 237 ~~~ldl~~~~~r~~sp~h~~yl~~~~v~asl~vpi~~~~~LWGLl~~h~~~pr~~~~~~~~~~~~l~~~~~~~i~~~~~~ 316 (635)
T 4eho_A 237 GRDLDMSGCFLRSMSPIHLQYLKNMGVRATLVVSLVVGGKLWGLVACHHYLPRFIHFELRAICELLAEAIATRITALESF 316 (635)
T ss_dssp SSBCCGGGCTTBCCCHHHHHHHHHHTCCEEEEEEEEETTEEEEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccccccceecCCCHHHHHHHHhhCcceEEEEEEEEcceeeeeeeeecCCCCcCCHHHHHHHHHHHHHHHHHHhHHHhH
Confidence 999999999999999999999999999999999999999999987 223456777 344555444444
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCC--CCccccCCcchhhhccCCEEEEEECCeEEEecCCCCHHHHHHHHHHHHhccCCC
Q 037299 389 ASQLSEKHVLRTQTLLCDMLLRDS--PAGIVTQSPSIMDLVKCDGAALYYQGKYYPLGVTPTETQIKDIVEWLLTYHGDS 466 (1111)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~a~g~a~~~~~~~~~~g~~p~~~~i~~l~~~l~~~~~~~ 466 (1111)
+++..++++.++++.+++++.+.. +.++..+.++++++++|||++|+++++++++|.+|++.++++|+.|+...+. .
T Consensus 317 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~l~~adg~al~~~~~~~~~G~~P~~~~i~~l~~wl~~~~~-~ 395 (635)
T 4eho_A 317 AQSQSELFVQRLEQRMIEAITREGDWRAAIFDTSQSILQPLHADGCALVYEDQIRTIGDVPSTQDVREIAGWLDRQPR-A 395 (635)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSSSSCSHHHHSCTTSCSSGGGTCSEEEEEETTEEEEEESCCCHHHHHHHHHHHTTSCC-C
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCchhhHHHhcChHHHhhhcCCeEEEEECCEEEEEeCCCCHHHHHHHHHHHHhcCC-C
Confidence 555566677788888888876543 5788999999999999999999999999999999999999999999987754 4
Q ss_pred eeEeecccccCCCCCccccccceeeEEEEEeCC--CcEEEEeecCCCcEEEecCCCCCCCCC-CCCCCccccchhHHHHH
Q 037299 467 TGLSTDSLADAGYPKAATLGDAVCGMAVAYITK--RDFLFWFRSHTAKEIKWGGAKHHPEDK-DDGQRMHPRSSFKAFLE 543 (1111)
Q Consensus 467 ~~~~t~~l~~~~~p~~~~~~~~~~G~l~~~~~~--~~~~~wfr~e~~~~v~Wag~p~~~~~~-~~g~~l~pr~SF~~w~e 543 (1111)
.+|+|++|.. .||++..+++.+|||++++|+. ++|++|||+|+.++|+|||+|+|+... ++|.+|+||+||++|.|
T Consensus 396 ~~~~t~~l~~-~~p~~~~~~~~~~G~l~~~i~~~~~~~l~~fR~e~~~~v~WaG~p~~~~~~~~~~~~l~PR~SF~~w~e 474 (635)
T 4eho_A 396 AVTSTASLGL-DVPELAHLTRMASGVVAAPISDHRGEFLMWFRPERVHTVTWGGDPKKPFTMGDTPADLSPRRSFAKWHQ 474 (635)
T ss_dssp SSEEESCHHH-HCGGGGGGHHHHSEEEEEECSSSSSCEEEEEECCTTTTTCSSSCCSCCCCSCCSGGGCSHHHHHHHHHH
T ss_pred cEEEeccccc-cCcchhhhhhhcccEEEEEecCCCCcEEEEeccceeEEEEeccCCCCccccCCCcceecceeeeecccc
Confidence 7999999986 6999999999999999999986 699999999999999999999999765 45679999999999999
Q ss_pred HHhccccCCchhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCc
Q 037299 544 VVKSRSLPWDNAEMDAIHSLQLILRDSFRDAEASNSKAVVNAQLVDLELQGVDELSSVAREMVRLIETATAPIFAVDVHG 623 (1111)
Q Consensus 544 ~v~g~s~pW~~~El~aa~~Lrl~L~~~l~~~~~~~e~~~~~~~l~~~l~~~~~eL~~~~~~l~~lie~~~~~I~~~D~dG 623 (1111)
+++++|.||...|++++..++..+........ .....++++..+++.+++++++++||++|.+|
T Consensus 475 ~v~~~s~pW~~~e~~aa~~l~~~l~~~il~~r----------------~~~~~~a~e~~~~~~~lle~a~~~i~~~D~~g 538 (635)
T 4eho_A 475 VVEGTSDPWTAADLAAAGTIGQTVADIVLQFR----------------AVRTLIAREQVPQASSQVHASMQPVLITDAEG 538 (635)
T ss_dssp TTTTCCSCCCTTHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHTSSSHHHHHHHCSSCCEEEETTC
T ss_pred eeeecccccchhhhHHHHhhhhhHHHHHHHHh----------------HHHHHHHHHHHHHHHHHHHhCCCcEEEECCCC
Confidence 99999999999999999999665544432211 11122233444567889999999999999999
Q ss_pred cEEeecHHHHHHcCCChhhhcCCcccccccchhhHHHHHHHHHHHHcCCCccceEEEEEEeccccCCcEEEEEEEeEeec
Q 037299 624 CVNGWNAKVAELTGLSVEEAMGKSLVHDLVYKEYEEIVDNLLHHALKGEEDKNVEIKLRTFGAENRKKAVFVVVNACSSK 703 (1111)
Q Consensus 624 ~I~~~N~a~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~l~~~~~~~dG~~~~v~v~~~pi~ 703 (1111)
+|++||+++++++||+.++++|++.. ..+++++.+.+...++.+..++.. ..+++++ ++||+.+|+.++++|++
T Consensus 539 rI~~~N~a~~~l~G~s~~e~~g~~~l-~~~~~~~~~~~~~i~~~l~~g~~~-~~E~~~~----~~dG~~~~~~~~~~pv~ 612 (635)
T 4eho_A 539 RILLMNDSFRDMLPAGSPSAVHLDDL-AGFFVESNDFLRNVAELIDHGRGW-RGEVLLR----GAGNRPLPLAVRADPVT 612 (635)
T ss_dssp CEEEECHHHHTTSCSSCCCCCSSGGG-TTSSSSCTHHHHHHHHHHHHCCCB-CCCCEEC----CSSSSCEECCCCEEEEC
T ss_pred eEeeHHHHHHHHHCcChHHHcCcchh-hccCCCCHHHHHHHHHHHHcCCcE-EEEEEEE----ccCCcEEEEEEEEEEEE
Confidence 99999999999999999999999887 788888888888888777776543 3455544 78999999999999999
Q ss_pred cCCCCEEEEEEEEEechhHHHHH
Q 037299 704 DYTNNIVGVCFVGQDVTDQKLVM 726 (1111)
Q Consensus 704 d~~G~v~gvv~v~~DITerK~ae 726 (1111)
|.+|+++|++++++|||+||++|
T Consensus 613 d~~G~v~g~v~i~~DITerK~aE 635 (635)
T 4eho_A 613 RTEDQSLGFVLIFSDATDRRTAD 635 (635)
T ss_dssp STTSSCCEEEECCCCCSSSCCCC
T ss_pred CCCCCEEEEEEEEEeCchHhhCC
Confidence 99999999999999999999764
No 2
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A*
Probab=100.00 E-value=6.3e-107 Score=954.27 Aligned_cols=467 Identities=29% Similarity=0.521 Sum_probs=411.0
Q ss_pred hhccCCCCCCccceEEEEeCCCceEEeeccchhhhhCCCCCCCCcchhhhhhhcCCchhhhcCchhHHHHHHHhcccccc
Q 037299 88 SKIQRGGHIQPFGCTIAVDEATFRVIAYSENAGEMLGLAPQSVPNLEKQEILTIGTDVRTLFTSSSSVLLEKAFGAREIT 167 (1111)
Q Consensus 88 ~~i~~~g~iQp~G~ll~~~~~~~~i~~~S~N~~~~lg~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (1111)
|+||+||+|||||||||+|+++++|+|+|+|++++||++|+ .++|+++.++|++.+++.+++++......
T Consensus 18 EPIh~pG~IQphG~LLal~~~~~~I~~~S~N~~~~lg~~~~----------~llG~~l~~ll~~~~~~~l~~~l~~~~~~ 87 (520)
T 3zq5_A 18 LAIHTAHLIQPHGLVVVLQEPDLTISQISANCTGILGRSPE----------DLLGRTLGEVFDSFQIDPIQSRLTAGQIS 87 (520)
T ss_dssp CCGGGCCEECTTSEEEEEETTTTEEEEEETTHHHHHSCCHH----------HHTTSBHHHHCEESSCCCCSSCCCHHHHH
T ss_pred ccccCCCccCCCeEEEEEECCCCEEEEEcccHHHHhCcChH----------HHcCCCHHHHcCHHHHHHHHHHhcccccc
Confidence 57999999999999999999999999999999999999874 36999999999999888888776655555
Q ss_pred cCCcEEEEec--CCCc-eEEEEEEEe-CCEEEEEeeeCCCCCCcchhhhhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 037299 168 LLNPIWIHSK--NTGK-PFYAILHRV-DVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCDTVV 243 (1111)
Q Consensus 168 ~~~~~~~~~~--~~~~-~f~~~~h~~-~~~~i~e~E~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~~~~ 243 (1111)
..+|+.++++ .+++ .||+++||+ ++.+||||||..+.+.. +..+.++++.+++.||++ +.|++++|+++|
T Consensus 88 ~~~p~~~~~~~~~~~~~~f~~~~Hr~~~~~lilElEp~~~~~~~----~~~~~~~ll~~i~~~Ir~--sl~l~~il~~~v 161 (520)
T 3zq5_A 88 SLNPSKLWARVMGDDFVIFDGVFHRNSDGLLVCELEPAYTSDNL----PFLGFYHMANAALNRLRQ--QANLRDFYDVIV 161 (520)
T ss_dssp HTSSEEEEEEETTTEEEEEEEEEEECTTSCEEEEEEECCTTCSC----CCTTHHHHHHHHHHHHHH--SCCHHHHHHHHH
T ss_pred cCCcEEEEEeccCCCceeEEEEEEEEcCCEEEEEEEECCCcccc----chHHHHHHHHHHHHHHHh--cCCHHHHHHHHH
Confidence 6789988764 3455 799999999 99999999998654431 234678999999999999 789999999999
Q ss_pred HHHHHhhCCCeEEEEeecCCCCcEEEEEecCCCCCCccCCCCCCCCchHHHHHHHHhCCeeEeeccCCCcceeec--CCC
Q 037299 244 ESVRQLTGYDRVMVYRFHEDEHGEVVAESKRPDLEPYFGLHYPATDIPQASRFLFKQNRVRMIVDCHATPLCVIQ--DEG 321 (1111)
Q Consensus 244 ~~vr~~~g~DRVmiY~F~~d~~G~VvaE~~~~~~~~~lg~~~pa~dip~~ar~ly~~n~~r~i~d~~~~~~~~~~--~~~ 321 (1111)
+|||++|||||||||||++||+|+||||++.++|+||||+|||++|||+++|+||++|++|+|+|+++.|++|+| ++.
T Consensus 162 ~evr~ll~~DRVmIYrF~~d~~G~VvAEs~~~~~~s~LGl~~p~~diP~~ar~ly~~~~vr~I~Di~~~pv~l~~~~~~~ 241 (520)
T 3zq5_A 162 EEVRRMTGFDRVMLYRFDENNHGDVIAEDKRDDMEPYLGLHYPESDIPQPARRLFIHNPIRVIPDVYGVAVPLTPAVNPS 241 (520)
T ss_dssp HHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTSCCCTTEEECGGGSCHHHHHHHHHCCEEEESCTTCCCEEEESSSCTT
T ss_pred HHHHHHhCCCEEEEEEEcCCCcEEEEEEEeCCCchhhcCCccChhhhhHHHHHHHHcCCEEEEcCCCCCceeeecccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998 467
Q ss_pred CCCcccccCccccCCChhHHHHHHhcCcceEEEEEEEEcCCCcccc-CCCCCccch-------------HhhHhhcHHHH
Q 037299 322 LMQPLCLVGSTLRAPHGCHAQYMANMGSIASLALAVIINGNDEEAV-GGRSTTRLW-------------AFGLQLNMELQ 387 (1111)
Q Consensus 322 ~~~~ldls~~~lRsvsp~h~~yl~nmgv~asl~~~i~~~~~~~~~~-~~~~~~~LW-------------~~~~~~~~~~~ 387 (1111)
+++|+|||+|+||++||||+|||+||||+|||+|||+++|++||++ -++.+.+-| .+|++|.....
T Consensus 242 ~~~pldL~~s~lr~~sp~h~eyL~nmgV~AsLvvpI~~~~~LWGLl~~Hh~~pR~w~~~er~~~e~la~~lsiai~q~e~ 321 (520)
T 3zq5_A 242 TNRAVDLTESILRSAYHCHLTFLKNMGVGASLTISLIKDGHLWGLIACHHQTPKVIPFELRKACEFFGRVVFSNISAQED 321 (520)
T ss_dssp TSSCCCCTTCSSBCCCHHHHHHHHHTTCSEEEEEEEEETTEEEEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcccccccccccCCHHHHHHHHhcCCcEEEEEeEEECCEEEEEEEEecCCCcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999987 222368899 33444443333
Q ss_pred HHHHHHHHHHHHH-HHHHHHHhccCC-CCccccCCcchhhhccCCEEEEEECCeEEEecCCCCHHHHHHHHHHHHhccCC
Q 037299 388 LASQLSEKHVLRT-QTLLCDMLLRDS-PAGIVTQSPSIMDLVKCDGAALYYQGKYYPLGVTPTETQIKDIVEWLLTYHGD 465 (1111)
Q Consensus 388 ~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~l~~~~~a~g~a~~~~~~~~~~g~~p~~~~i~~l~~~l~~~~~~ 465 (1111)
.+....++++.++ .++++.|...++ +.++..+.++|++|++|||+||+++|+++++|.||++++|++|++||..++.+
T Consensus 322 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~ll~l~~adG~al~~~~~~~~~G~~P~~~~i~~l~~wl~~~~~~ 401 (520)
T 3zq5_A 322 TETFDYRVQLAEHEAVLLDKMTTAADFVEGLTNHPDRLLGLTGSQGAAICFGEKLILVGETPDEKAVQYLLQWLENREVQ 401 (520)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHTCHHHHHHTTTCSEEEEEETTEEEEEESCCCHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCcChhHHHHhccHHHHhhhcCCeEEEEECCEEEEcCCCCCHHHHHHHHHHHHhcCCC
Confidence 3333334444433 446677766655 68899999999999999999999999999999999999999999999998765
Q ss_pred CeeEeecccccCCCCCccccccceeeEEEEEeCCCcEEEEeecCCCcEEEecCCCCCCCC--CCCCC-CccccchhHHHH
Q 037299 466 STGLSTDSLADAGYPKAATLGDAVCGMAVAYITKRDFLFWFRSHTAKEIKWGGAKHHPED--KDDGQ-RMHPRSSFKAFL 542 (1111)
Q Consensus 466 ~~~~~t~~l~~~~~p~~~~~~~~~~G~l~~~~~~~~~~~wfr~e~~~~v~Wag~p~~~~~--~~~g~-~l~pr~SF~~w~ 542 (1111)
++|+||+|++ .||++..+++.+|||||++|+.++||+|||||+.++|+|||+|+|++. .++|. +|+||+||++|+
T Consensus 402 -~v~~Td~L~~-~~p~a~~~~~~a~G~lai~ls~~~~l~wFR~e~~~~v~WaG~P~k~~~~~~~~g~~~l~PR~SF~~W~ 479 (520)
T 3zq5_A 402 -DVFFTSSLSQ-IYPDAVNFKSVASGLLAIPIARHNFLLWFRPEVLQTVNWGGDPNHAYEATQEDGKIELHPRQSFDLWK 479 (520)
T ss_dssp -SCEEESCGGG-TSGGGGGGHHHHSEEEEEEETTTEEEEEEECCCCEEEEESSCGGGCSEEEEETTEEEEECCCCCCCEE
T ss_pred -CeeEecchhh-hCcchhhcccccceEEEEEeCCCCEEEEECCCcceEEEeCCCCCCcCCcCCCCCCccccchhhhhhhe
Confidence 6999999998 699999999999999999999999999999999999999999999976 33675 899999999999
Q ss_pred HHHhccccCCchhHHHHHHHHHHHHHHHHH
Q 037299 543 EVVKSRSLPWDNAEMDAIHSLQLILRDSFR 572 (1111)
Q Consensus 543 e~v~g~s~pW~~~El~aa~~Lrl~L~~~l~ 572 (1111)
|+|+|+|.||+..|+++|..|+..+.+.+.
T Consensus 480 E~v~g~s~pW~~~e~~~A~~Lr~~l~~vvl 509 (520)
T 3zq5_A 480 EIVRLQSLPWQSVEIQSALALKKAIVNLIL 509 (520)
T ss_dssp EEECSCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred eeecCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999766555543
No 3
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A*
Probab=100.00 E-value=1.3e-103 Score=924.69 Aligned_cols=452 Identities=27% Similarity=0.412 Sum_probs=397.1
Q ss_pred hhccCCCCCCccceEEEEeCCCceEEeeccchhhhhCCCCCCCCcchhhhhhhcCCchhh-hcCchhHHHHHHHhccccc
Q 037299 88 SKIQRGGHIQPFGCTIAVDEATFRVIAYSENAGEMLGLAPQSVPNLEKQEILTIGTDVRT-LFTSSSSVLLEKAFGAREI 166 (1111)
Q Consensus 88 ~~i~~~g~iQp~G~ll~~~~~~~~i~~~S~N~~~~lg~~~~~~~~~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~~~~~ 166 (1111)
|+||+||+|||||||||+|+ +++|+|+|+|++++||+++ ++|+++.+ +|+++..+.+++++.....
T Consensus 15 EPIh~pG~IQphG~Ll~l~~-~~~I~~~S~N~~~~lg~~~------------~lG~~l~~~ll~~~~~~~l~~~l~~~~~ 81 (505)
T 3nhq_A 15 EPIHVPGAIQPHGALVTLRA-DGMVLAASENIQALLGFVA------------SPGSYLTQEQVGPEVLRMLEEGLTGNGP 81 (505)
T ss_dssp CCTTSCSEECTTEEEEEECT-TSBEEEEETTHHHHHSSCC------------CTTCBCCHHHHHHHHHHHHHHHHSCSSC
T ss_pred ccccCCCccCCCeEEEEEcC-CCeEEEEcccHHHHhCccc------------ccCCchhhhhCCHHHHHHHHHHhhcccc
Confidence 45999999999999999999 8999999999999999976 38999999 9999999999998876544
Q ss_pred ccCCcEEEEecCCCceEEEEEEEeCCEEEEEeeeCCCCCCcchhhhhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 037299 167 TLLNPIWIHSKNTGKPFYAILHRVDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCDTVVESV 246 (1111)
Q Consensus 167 ~~~~~~~~~~~~~~~~f~~~~h~~~~~~i~e~E~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~~~~~~v 246 (1111)
..+|+.++ .++++||+++||+++.+|+||||..+... ...+.++++.+++.+|++ +.|++++|+++|+||
T Consensus 82 -~~~p~~~~--~~~~~f~~~~Hr~~~~lilElEp~~~~~~-----~~~~~~~ll~~i~~~Ir~--sl~l~~il~~~v~ev 151 (505)
T 3nhq_A 82 -WSNSVETR--IGEHLFDVIGHSYKEVFYLEFEIRTADTL-----SITSFTLNAQRIIAQVQL--HNDTASLLSNVTDEL 151 (505)
T ss_dssp -CCCEEEEC--SSSSCEEEEEEEETTEEEEEEEECCSCCC-----CSHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHH
T ss_pred -cCCcEEEe--cCCceEEEEEEEECCEEEEEEEEcCCccc-----chHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHH
Confidence 67888885 56778999999999999999999865432 124788999999999999 779999999999999
Q ss_pred HHhhCCCeEEEEeecCCCCcEEEEEecCCCCCCccCCCCCCCCchHHHHHHHHhCCeeEeeccCCCcceeecC--CCCCC
Q 037299 247 RQLTGYDRVMVYRFHEDEHGEVVAESKRPDLEPYFGLHYPATDIPQASRFLFKQNRVRMIVDCHATPLCVIQD--EGLMQ 324 (1111)
Q Consensus 247 r~~~g~DRVmiY~F~~d~~G~VvaE~~~~~~~~~lg~~~pa~dip~~ar~ly~~n~~r~i~d~~~~~~~~~~~--~~~~~ 324 (1111)
|++|||||||||||++||+|+||||++.++|+||||+|||++|||+++|+||++|++|+|+|+++.|||++|. +.+++
T Consensus 152 r~ll~~DRV~IYrF~~d~~G~VvaEs~~~~~~s~LGl~~p~~diP~~ar~ly~~~~vr~I~Dv~~~~~~l~~~~~~~~~~ 231 (505)
T 3nhq_A 152 RRMTGYDRVMAYRFRHDDSGEVVAESRREDLESYLGQRYPASDIPAQARRLYIQNPIRLIADVAYTPMRVFPALNPETNE 231 (505)
T ss_dssp HHHHCCSEEEEEEECTTSCEEEEEEEECTTSCCCTTCEECGGGSCHHHHHHHHHCSEEEESCTTCCCEEEESSEETTTTE
T ss_pred HHHhCCCeEEEEEecCCCCEEEEEEEeCCCchhhcCCccCcccCHHHHHHHHHcCCEEEEcCCCCCccccccccccccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999984 67789
Q ss_pred cccccCccccCCChhHHHHHHhcCcceEEEEEEEEcCCCcccc--CCCCCccch-------------HhhHhhcHHHHHH
Q 037299 325 PLCLVGSTLRAPHGCHAQYMANMGSIASLALAVIINGNDEEAV--GGRSTTRLW-------------AFGLQLNMELQLA 389 (1111)
Q Consensus 325 ~ldls~~~lRsvsp~h~~yl~nmgv~asl~~~i~~~~~~~~~~--~~~~~~~LW-------------~~~~~~~~~~~~~ 389 (1111)
|+|||+|+|||+||||+|||+||||+|||+|||+++|++||++ +++ ..+-| .+|++|+.....+
T Consensus 232 pldLs~~~lR~~sp~h~eyL~nmgV~AsLvvpI~~~~~LWGLl~~Hh~-~pR~w~~~er~~~e~la~~ls~al~q~~~~~ 310 (505)
T 3nhq_A 232 SFDLSYSVLRSVSPIHCEYLTNMGVRASMSISIVVGGKLWGLFSCHHM-SPKLIPYPVRMSFQIFSQVCSAIVERLEQGR 310 (505)
T ss_dssp ECCCTTCTTBCCCHHHHHHHHHHTCCEEEEEEEECSSSEEEEEEEEES-SCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccCCHHHHHHHHhcCCceEEEEEEEECCEEEEEEEEecC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999987 343 48889 3444454444445
Q ss_pred HHHHHHHHHHHHHHHHHHhccC--CCCccccCCcchhhhccCCEEEEEECCeEEEecCCCCHHHHHHHHHHHHhccCCCe
Q 037299 390 SQLSEKHVLRTQTLLCDMLLRD--SPAGIVTQSPSIMDLVKCDGAALYYQGKYYPLGVTPTETQIKDIVEWLLTYHGDST 467 (1111)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~a~g~a~~~~~~~~~~g~~p~~~~i~~l~~~l~~~~~~~~ 467 (1111)
++..++++.++++.++.++.++ .+.++..+.++++++++|||+|||++|+++++|.||++++|++|++||..++.+
T Consensus 311 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~ll~adg~al~~~~~~~~~G~~P~~~~i~~l~~wl~~~~~~-- 388 (505)
T 3nhq_A 311 IAELLRVSTERRLALARRARDADDLFGALAHPDDGIAALIPCDGALVMLGGRTLSIRGDFERQAGNVLQRLQRDPERD-- 388 (505)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCTTTSHHHHTTCSEEEEEETTEEEEESSCCHHHHHHHHHHHHTCTTCS--
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHhhHHHHHHhCCCeEEEEECCeEEecCCCCCHHHHHHHHHHHHhcCCC--
Confidence 5555666677777777766543 357888999999999999999999999999999999999999999999988665
Q ss_pred eEeecccccCCCCCccc---cccceeeEEEEEeCC--CcEEEEeecCCCcEEEecCCCCCCCC-CCCCCCccccchhHHH
Q 037299 468 GLSTDSLADAGYPKAAT---LGDAVCGMAVAYITK--RDFLFWFRSHTAKEIKWGGAKHHPED-KDDGQRMHPRSSFKAF 541 (1111)
Q Consensus 468 ~~~t~~l~~~~~p~~~~---~~~~~~G~l~~~~~~--~~~~~wfr~e~~~~v~Wag~p~~~~~-~~~g~~l~pr~SF~~w 541 (1111)
+|+|| .||++.. +++.+|||||++|+. ++||+|||+|+.++|+|||||+|++. .++|.+|+||+||++|
T Consensus 389 v~~Td-----~~p~a~~~~~~~~~~~G~lai~ls~~~~~~l~wFR~e~~~~v~WaG~P~k~~~~~~~~~~l~PR~SF~~W 463 (505)
T 3nhq_A 389 IYHTD-----NWPQPSEDSPDGGDCCGVLAIRFHRQESGWIFWFRHEEVHRIRWGGKPEKLLTIGPSGPRLTPRGSFEAW 463 (505)
T ss_dssp EEEES-----CC-----------CCCEEEEEEEETTTTEEEEEEECSCCCSEEEEESCCCCCCCCTTCGGGSHHHHHHHH
T ss_pred eEEeC-----CCcchhhccccccccceEEEEEecCCCCcEEEEEcCCcceEEEeCCCCCCcCCCCCCCCccCchhhhhhh
Confidence 99999 4999988 899999999999986 79999999999999999999999976 4568899999999999
Q ss_pred HHHHhccccCCchhHHHHHHHHHHHHHHH
Q 037299 542 LEVVKSRSLPWDNAEMDAIHSLQLILRDS 570 (1111)
Q Consensus 542 ~e~v~g~s~pW~~~El~aa~~Lrl~L~~~ 570 (1111)
+|+|+|+|.||+..|+++|..|+..+.+.
T Consensus 464 ~E~v~g~s~pW~~~e~~~A~~Lr~~l~~v 492 (505)
T 3nhq_A 464 EEVVRGHSTPWSETDLAIAEKLRLDLMEL 492 (505)
T ss_dssp HHHHTTCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred eeeecCccCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999996655444
No 4
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris}
Probab=100.00 E-value=5.2e-72 Score=618.20 Aligned_cols=271 Identities=30% Similarity=0.461 Sum_probs=247.0
Q ss_pred hhccCCCCCCccceEEEEeCCCceEEeeccchhhhhCCCCCCCCcchhhhhhhcCCchhhhcCchhHHHHHHHhcccccc
Q 037299 88 SKIQRGGHIQPFGCTIAVDEATFRVIAYSENAGEMLGLAPQSVPNLEKQEILTIGTDVRTLFTSSSSVLLEKAFGAREIT 167 (1111)
Q Consensus 88 ~~i~~~g~iQp~G~ll~~~~~~~~i~~~S~N~~~~lg~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (1111)
++||+||+|||||||||+| ++++|+|+|+|++++||++++ .++|+++.++|++.+.+.+++++......
T Consensus 18 EpIh~~G~IQphG~Ll~~~-~~~~I~~~S~N~~~~lg~~~~----------~~lG~~l~~ll~~~~~~~l~~~l~~~~~~ 86 (327)
T 4e04_A 18 EPIHIPGAIQPHGLLLALA-ADMTIVAGSDNLPELTGLAIG----------ALIGRSAADVFDSETHNRLTIALAEPGAA 86 (327)
T ss_dssp CCTTCCSEECTTSEEEEEC-TTCBEEEEETTHHHHHSCCHH----------HHTTCBHHHHBCHHHHHHHHHHHHSCSCC
T ss_pred ccccCCCccCCCeEEEEEc-CCCeEEEEcccHHHHhCCChH----------hhcCCCHHHHcCHHHHHHHHHHhhccccc
Confidence 4599999999999999999 899999999999999999764 36999999999999999999988776666
Q ss_pred cCCcEEEEec--CCCceEEEEEEEeCCEEEEEeeeCCCCCCcchhhhhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 037299 168 LLNPIWIHSK--NTGKPFYAILHRVDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCDTVVES 245 (1111)
Q Consensus 168 ~~~~~~~~~~--~~~~~f~~~~h~~~~~~i~e~E~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~~~~~~ 245 (1111)
..+|+.+++. .+++.||+++||+++.+|+||||..... .. ..+.++++.+++.||++ +.|++++|+++|+|
T Consensus 87 ~~~p~~~~~~~~~~~~~f~~~~Hr~~~~lilElEp~~~~~--~~---~~~~~~ll~~i~~rIr~--sldl~~il~~av~e 159 (327)
T 4e04_A 87 VGAPIAVGFTMPDGERAFNGSWHRHDQLVFLELEPPQRDV--RY---PQAFFRSVRSAIRRLQA--AETLESACAAAAQE 159 (327)
T ss_dssp SEEEEEEEBCCTTCCCEEEEEEEEETTEEEEEEECCCCCS--SC---CCCHHHHHHHHHHHHHH--CCSHHHHHHHHHHH
T ss_pred cCCcEEEEeeccCCCceEEEEEEEECCEEEEEEEECCCcc--cc---hHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHH
Confidence 6789988733 4577999999999999999999983322 11 12578999999999999 67999999999999
Q ss_pred HHHhhCCCeEEEEeecCCCCcEEEEEecCCCCCCccCCCCCCCCchHHHHHHHHhCCeeEeeccCCCcceeec--CCCCC
Q 037299 246 VRQLTGYDRVMVYRFHEDEHGEVVAESKRPDLEPYFGLHYPATDIPQASRFLFKQNRVRMIVDCHATPLCVIQ--DEGLM 323 (1111)
Q Consensus 246 vr~~~g~DRVmiY~F~~d~~G~VvaE~~~~~~~~~lg~~~pa~dip~~ar~ly~~n~~r~i~d~~~~~~~~~~--~~~~~ 323 (1111)
||++|||||||||||++||+|+||||++.++|+||||+|||++|||+++|+||++|++|+|+|+++.||+|+| ++.++
T Consensus 160 vr~llg~DRVmIYrF~~d~~G~VvAEs~~~~~~s~LGl~~p~~dip~~ar~ly~~~~vr~I~Di~~~~v~l~~~~~~~~~ 239 (327)
T 4e04_A 160 VREITGFDRVMIYRFASDFSGEVIAEDRCAEVESYLGLHFPASDIPAQARRLYTINPVRIIPDINYRPVPVTPDLNPRTG 239 (327)
T ss_dssp HHHHHCCSEEEEEEECTTSCEEEEEEEECTTSCCCTTCEECGGGSCHHHHHHHHHSCEEEESCTTCCCEEEESCCCTTTS
T ss_pred HHHHHCCCeEEEEEEcCCCCEEEEEEEecCCCcCccCCccccccchHHHHHHHHcCCEEEEeCCCCCccccccccccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998 46789
Q ss_pred CcccccCccccCCChhHHHHHHhcCcceEEEEEEEEcCCCcccc-CCCCCccch
Q 037299 324 QPLCLVGSTLRAPHGCHAQYMANMGSIASLALAVIINGNDEEAV-GGRSTTRLW 376 (1111)
Q Consensus 324 ~~ldls~~~lRsvsp~h~~yl~nmgv~asl~~~i~~~~~~~~~~-~~~~~~~LW 376 (1111)
+|+||++|+||++||||+|||+||||+|||+|||+++|++||++ -++.+.|-|
T Consensus 240 ~~ldls~s~lr~~spcH~eyL~nmgV~AsLvvpI~~~~~LWGLl~~Hh~~pR~w 293 (327)
T 4e04_A 240 RPIDLSFAILRSVSPVHLEYMRNIGMHGTMSISILRGERLWGLIACHHRKPNYV 293 (327)
T ss_dssp SCCCCTTCTTBCCCHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEESSCCCC
T ss_pred CcccccccccccCCHHHHHHHHHhCCcEEEEEEEEECCEEEEEEEEecCCCcCC
Confidence 99999999999999999999999999999999999999999987 234678899
No 5
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A*
Probab=100.00 E-value=2.1e-72 Score=621.80 Aligned_cols=265 Identities=28% Similarity=0.451 Sum_probs=242.8
Q ss_pred hhccCCCCCCccceEEEEeCCCceEEeeccchhhhhCCCCCCCCcchhhhhhhcCCchhhhcCchhHHHHHHHhcccccc
Q 037299 88 SKIQRGGHIQPFGCTIAVDEATFRVIAYSENAGEMLGLAPQSVPNLEKQEILTIGTDVRTLFTSSSSVLLEKAFGAREIT 167 (1111)
Q Consensus 88 ~~i~~~g~iQp~G~ll~~~~~~~~i~~~S~N~~~~lg~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (1111)
++||+||+|||||||||+|+++++|+++|+|++++||++|+ .++|+++.++|++ .++.+++++......
T Consensus 41 EPIh~pG~IQphG~LL~l~~~~~~I~~~S~N~~~~lg~~~~----------~llG~~l~~ll~~-~~~~l~~~l~~~~~~ 109 (343)
T 3s7o_A 41 EPIHIPGSIQPHGALLTADGHSGEVLQMSLNAATFLGQEPT----------VLRGQTLAALLPE-QWPALQAALPPGCPD 109 (343)
T ss_dssp CCTTCCSEECTTSEEEEEETTTCBEEEEETTHHHHHSSCHH----------HHTTCBHHHHSTT-THHHHHHHSCTTCCT
T ss_pred ccccCCCccCCCeEEEEEECCCCEEEEEcccHHHHhCcChH----------HHcCCCHHHHHhH-HHHHHHHHhcccccc
Confidence 34999999999999999999999999999999999999764 3799999999999 999999988766665
Q ss_pred cCC---cEEEEecCCCceEEEEEEEeCCEEEEEeeeCCCCCCcchhhhhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 037299 168 LLN---PIWIHSKNTGKPFYAILHRVDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCDTVVE 244 (1111)
Q Consensus 168 ~~~---~~~~~~~~~~~~f~~~~h~~~~~~i~e~E~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~~~~~ 244 (1111)
..+ |+.+. .+++|++++||+++.+|+||||..+.+ .+.++++.+++.||++ +.|++++|+++|+
T Consensus 110 ~~~~~~p~~~~---~~~~f~~~~Hr~~~~lilElEp~~~~~--------~~~~~ll~~i~~rIr~--sldl~~ilq~tV~ 176 (343)
T 3s7o_A 110 ALQYRATLDWP---AAGHLSLTVHRVGELLILEFEPTEAWD--------STGPHALRNAMFALES--APNLRALAEVATQ 176 (343)
T ss_dssp TCCEEEEECCS---SSSEEEEEEEEETTEEEEEEEEEC------------CHHHHHHHHHHHHHH--CCSHHHHHHHHHH
T ss_pred ccccCCcEEEc---CCCEEEEEEEEECCEEEEEEEECCCCh--------HHHHHHHHHHHHHHHh--cCCHHHHHHHHHH
Confidence 666 77663 567899999999999999999986532 1578999999999999 7799999999999
Q ss_pred HHHHhhCCCeEEEEeecCCCCcEEEEEecCCCCCCccCCCCCCCCchHHHHHHHHhCCeeEeeccCCCcceeec--CCCC
Q 037299 245 SVRQLTGYDRVMVYRFHEDEHGEVVAESKRPDLEPYFGLHYPATDIPQASRFLFKQNRVRMIVDCHATPLCVIQ--DEGL 322 (1111)
Q Consensus 245 ~vr~~~g~DRVmiY~F~~d~~G~VvaE~~~~~~~~~lg~~~pa~dip~~ar~ly~~n~~r~i~d~~~~~~~~~~--~~~~ 322 (1111)
|||++|||||||||||++||+|+||||++.++|+||||+|||++|||+++|+||++|++|+|+|+++.||+|+| ++.+
T Consensus 177 eVR~llg~DRVmIYrF~~d~~GeVvAEs~~~~~~s~LGl~~pasdiP~~ar~ly~~~~vr~I~Di~~~pv~l~~~~~~~~ 256 (343)
T 3s7o_A 177 TVRELTGFDRVMLYKFAPDATGEVIAEARREGLHAFLGHRFPASHIPAQARALYTRHLLRLTADTRAAAVPLDPVLNPQT 256 (343)
T ss_dssp HHHHHHCCSEEEEEEECTTSCEEEEEEEECTTCCCCTTCEECGGGSCHHHHHHHHHSCEEEESCTTCCCEEEESSEETTT
T ss_pred HHHHHhCCCeEEEEEEcCCCCEEEEEEEecCCcccccCCccccccCHHHHHHHHHcCCEEEEeccCCCcccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998 4678
Q ss_pred CCcccccCccccCCChhHHHHHHhcCcceEEEEEEEEcCCCcccc-CCCCCccch
Q 037299 323 MQPLCLVGSTLRAPHGCHAQYMANMGSIASLALAVIINGNDEEAV-GGRSTTRLW 376 (1111)
Q Consensus 323 ~~~ldls~~~lRsvsp~h~~yl~nmgv~asl~~~i~~~~~~~~~~-~~~~~~~LW 376 (1111)
++|||||+|+||++||||+|||+||||+|||+|||+++|++||++ -++.+.|-|
T Consensus 257 ~~~ldLs~s~lR~~spcH~eyL~nmgV~AsLvvpI~~~~~LWGLL~~Hh~~pR~w 311 (343)
T 3s7o_A 257 NAPTPLGGAVLRATSPMHMQYLRNMGVGSSLSVSVVVGGQLWGLIACHHQTPYVL 311 (343)
T ss_dssp TEECCCTTCTTBCCCHHHHHHHHHTTCSEEEEEEEEETTEEEEEEEEEESSCCCC
T ss_pred CCcccccccccccCCHHHHHHHHHcCCcEEEEEEEEECCEEEEEEEEEcCCCcCC
Confidence 999999999999999999999999999999999999999999987 233678899
No 6
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9
Probab=100.00 E-value=1.1e-68 Score=599.94 Aligned_cols=270 Identities=29% Similarity=0.476 Sum_probs=247.2
Q ss_pred hhccCCCCCCccceEEEEeCCCceEEeeccchhhhhCCCCCCCCcchhhhhhhcCCchhhhcCchhHHHHHHHhcccccc
Q 037299 88 SKIQRGGHIQPFGCTIAVDEATFRVIAYSENAGEMLGLAPQSVPNLEKQEILTIGTDVRTLFTSSSSVLLEKAFGAREIT 167 (1111)
Q Consensus 88 ~~i~~~g~iQp~G~ll~~~~~~~~i~~~S~N~~~~lg~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (1111)
++||+||+|||||||||+|+++++|+++|+|+.++||.+|++ ++|+++.++|+++..+.+++++......
T Consensus 31 EpIh~~g~IQp~G~Ll~~~~~~~~i~~~S~N~~~~lg~~~~~----------llG~~l~~ll~~~~~~~l~~~l~~~~~~ 100 (337)
T 2ool_A 31 EPIHIPGAIQPHGYLFVVSETDLRIASVSANVEDLLRQPPAS----------LLNVPIAHYLTAASAARLTHALHGGDPA 100 (337)
T ss_dssp SCTTCCSEECTTSEEEEECTTTCBEEEEETTHHHHHSSCGGG----------GTTCBGGGGBCHHHHHHHHHHHCC----
T ss_pred CcCcCCCccCCCEEEEEEECCCCEEEEEehhHHHHHCcCHHH----------HcCCCHHHHcCHHHHHHHHHHHhcCCcc
Confidence 469999999999999999999999999999999999998754 6999999999999999999998877667
Q ss_pred cCCcEEEEecC--CCceEEEEEEEeCCEEEEEeeeCCCCCCcchhhhhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 037299 168 LLNPIWIHSKN--TGKPFYAILHRVDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCDTVVES 245 (1111)
Q Consensus 168 ~~~~~~~~~~~--~~~~f~~~~h~~~~~~i~e~E~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~~~~~~ 245 (1111)
..+|+.++... .+++|++++||+++.+|+||||...... ..+.++++.+++.||++ +.|++++|+++|+|
T Consensus 101 ~~~p~~~~~~~~~~~~~f~~~~Hr~~~~li~ElE~~~~~~~------~~~~~~ll~~i~~~Ir~--sl~l~~il~~tv~e 172 (337)
T 2ool_A 101 AINPIRLDVVTPDGERAFNGILHRHDSIVILELEPRDESRY------TNEFFRSVRVAIRRLQT--AADLPTACWIAASE 172 (337)
T ss_dssp CCCSEEEEEEETTEEEEEEEEEEEETTEEEEEEECCCCCSC------HHHHHHHHHHHHHHHHT--CCSHHHHHHHHHHH
T ss_pred ccCcEEEEEeccCCCeEEEEEEEEcCCeEEEEEEecccchh------hHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHH
Confidence 77998887654 3678999999999999999999865432 34688999999999999 78999999999999
Q ss_pred HHHhhCCCeEEEEeecCCCCcEEEEEecCCCCCCccCCCCCCCCchHHHHHHHHhCCeeEeeccCCCcceeecC--CCCC
Q 037299 246 VRQLTGYDRVMVYRFHEDEHGEVVAESKRPDLEPYFGLHYPATDIPQASRFLFKQNRVRMIVDCHATPLCVIQD--EGLM 323 (1111)
Q Consensus 246 vr~~~g~DRVmiY~F~~d~~G~VvaE~~~~~~~~~lg~~~pa~dip~~ar~ly~~n~~r~i~d~~~~~~~~~~~--~~~~ 323 (1111)
||++|||||||||||++||+|+||||++.++|+||||+|||++|||+++|+||++|++|+|+|+++.||+|+|. +.++
T Consensus 173 vr~ll~~DRV~IYrF~~d~~G~VvaEs~~~~~~s~lGl~~p~~dip~~ar~ly~~~~vr~I~Di~~~~v~~~~~~~~~~~ 252 (337)
T 2ool_A 173 VRRITGFDRIKVYQFAADWSGQVIAEDRDSGIPSLLDFHFPSSDIPAQSRALYTINPVRIIPDIGYRPSPLVPDINPRLG 252 (337)
T ss_dssp HHHHHCCSEEEEEEECTTSCEEEEEEEECTTCCCCTTCEECGGGSCHHHHHHHHHSCEEEESCTTCCCEEEESCCCTTTC
T ss_pred HHHHhCCCeeEEEEEcCCCCEEEEEEEccCCCccccCCCCCccccHHHHHHHHHhCCEEEEEccCCCccccccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999984 6789
Q ss_pred CcccccCccccCCChhHHHHHHhcCcceEEEEEEEEcCCCcccc--CCCCCccch
Q 037299 324 QPLCLVGSTLRAPHGCHAQYMANMGSIASLALAVIINGNDEEAV--GGRSTTRLW 376 (1111)
Q Consensus 324 ~~ldls~~~lRsvsp~h~~yl~nmgv~asl~~~i~~~~~~~~~~--~~~~~~~LW 376 (1111)
+|||||+|+||++||||++||+||||+|||+|||+++|+|||++ +++. .|-|
T Consensus 253 ~~ldl~~~~lr~~sp~h~eyL~nm~v~AsLvvpI~~~~~LWGLl~~Hh~~-pR~w 306 (337)
T 2ool_A 253 GPIDLSFSVLRSVSPTHLEYMVNMGMHAAMSISIVRDNRLWGMISCHNLT-PRFV 306 (337)
T ss_dssp SSCCCTTCTTBCCCHHHHHHHHHHTCCEEEEEEEEETTEEEEEEEEEESS-CCCC
T ss_pred CCcccccccccCCCHHHHHHHHHcCccccEEEEEEECCeeEEEEEEecCC-CCCC
Confidence 99999999999999999999999999999999999999999987 4444 8899
No 7
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=100.00 E-value=4.1e-40 Score=378.84 Aligned_cols=336 Identities=18% Similarity=0.224 Sum_probs=264.1
Q ss_pred HHhHHHHHHHHHhCCCCCCCCccccCCCCccccchhhhHHHhCCCccccccccccccccccccccCChhhHHHHHHHHHh
Q 037299 729 FIHIQGDYKAIVHSPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGDIIGKMLVGEVFGSCCRLKGPDALTKFMIALHN 808 (1111)
Q Consensus 729 L~~se~~l~~i~~~~~~l~~~I~v~D~~g~ii~~N~a~~~l~G~~~eeliGk~l~~~v~~~~~~l~~~~~~~~~~~~l~~ 808 (1111)
+++++++++.+++++++ +|+++|.+|++++||+++++++||++++++|+++... .+++.... .+..
T Consensus 3 l~~~~~~~~~i~~~~~~---~i~~~d~~g~i~~~N~a~~~l~G~~~~e~~G~~~~~~--------~~~~~~~~---~~~~ 68 (349)
T 3a0r_A 3 VEHLRNFSESILESLET---AIITLSKDGRITEWNKKAEQLFGLKKENVLGRRLKDL--------PDFEEIGS---VAES 68 (349)
T ss_dssp ------CCCSSGGGSSS---EEEEEESSSBCSCBCHHHHHHHSCCSTTTTTCBSTTS--------TTTTHHHH---HHHH
T ss_pred hHHHHHHHHHHHhhhcC---eEEEECCCCCEEeeHHHHHHHhCCCHHHHcCcCHHHC--------cChhHHHH---HHHH
Confidence 34566678888999877 8999999999999999999999999999999986432 22333222 2222
Q ss_pred hhCCCCcceeeeeeecCCCCEEEEEEEEeeeecCCCCE-EEEEeeeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037299 809 AFGGQDTEKFPFPLFDRNGKYVQALLTANKRVNMEGQI-VGAFCFLQIASPELQQALTVQRQQEKKCFARLKELAYICQE 887 (1111)
Q Consensus 809 ~~~~~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v-~g~v~~~~DITer~~~e~el~~~~e~~~~~r~~~La~isHE 887 (1111)
.+..+..... ....+..+|+.++..|+.+.+|.. .|++++++|||++++.+.++++. ++...+.++++.++||
T Consensus 69 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~DiTe~~~~e~~~~~~--~~~~~~~~~~~~i~He 142 (349)
T 3a0r_A 69 VFENKEPVFL----NFYKFGERYFNIRFSPFRNAKTQLLEGVIITIDDVTELYKYEEERKRR--ERLSILGEMTARVAHE 142 (349)
T ss_dssp HHHHCCCCEE----ECCCBTTBCCEEEEEEECCTTTTSSCEEEEEEECCSTTTTTTTTTTHH--HHHHHHHHHHHHHHHH
T ss_pred HHhcCCceee----cccccCceEEEEEEEEEEcCCCceeeEEEEEEEechHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 3322222221 112223457888899999888875 68999999999988877655442 2344567889999999
Q ss_pred hhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHHHhhc-cccccccCCcceeeEeecHHHHHHHHHHHHHHH
Q 037299 888 IKNPLSGVSFTNSLLEATD-LTEDQKQLLETSAACEKQMLKIIKDV-DLESIEDGSLEFEKAEFLLGSVINAVVSQVMML 965 (1111)
Q Consensus 888 IrnPLt~I~~~~~LL~~~~-l~e~~~~~l~~i~~~~~~l~~lI~dL-dlsri~~g~~~l~~~~~~L~~vi~~v~~~~~~~ 965 (1111)
|||||++|.++++++.... ..+...++++.+....+++..+++++ ++++. ...+...++++.+++++++..+...
T Consensus 143 lr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~ 219 (349)
T 3a0r_A 143 IRNPITIIGGFIMRMKKHLDDPETLKKYINIITNELSRLETIVKEILEYSKE---RQVLEFTEFNLNELIREVYVLFEEK 219 (349)
T ss_dssp HHHHHHHHHHHHHHHTTSCSCSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHC---C-CEEEEEEEHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---ccccCCcccCHHHHHHHHHHHHHHH
Confidence 9999999999999997643 33456788999999999999999997 88883 3456789999999999999999999
Q ss_pred hhccCcEEEeecCCcccceEEEecHHHHHHHHHHHHHHHhhcCCCCCceEEEEEEEccccCCCCceeEEEEEEEeeCCCC
Q 037299 966 LRERNLQLIRDIPEEIKTLAVYGDQARIQQVLADFLLNMVRYSPSAEGWVEIHVRPTLKQSSEGQTIVHNEFRMVCPGEG 1045 (1111)
Q Consensus 966 ~~~~~i~l~~~~~~~~~~~~v~~D~~~L~qVl~nLl~NAik~t~~~~g~I~I~v~~~~~~~~~~~~~~~v~i~V~DnG~G 1045 (1111)
+..+++.+.++.+++.+ .+.+|+..|.|||.||+.||+||++. +|.|.|++....+ .+.|+|+|||+|
T Consensus 220 ~~~~~i~~~~~~~~~~~--~~~~d~~~l~~vl~nLl~NA~k~~~~-~~~i~i~~~~~~~---------~~~i~v~D~G~G 287 (349)
T 3a0r_A 220 IRKMNIDFCFETDNEDL--RVEADRTRIKQVLINLVQNAIEATGE-NGKIKITSEDMYT---------KVRVSVWNSGPP 287 (349)
T ss_dssp HTTTTCCCEEEESCSCC--EEEECHHHHHHHHHHHHTHHHHTTCT-TCCEEEEEEEETT---------EEEEEEEEESCC
T ss_pred HHHcCcEEEEecCCCCc--eEEeCHHHHHHHHHHHHHHHHHhccC-CCEEEEEEEecCC---------EEEEEEEECCCC
Confidence 99999999888776543 68999999999999999999999976 6899999877665 899999999999
Q ss_pred CChhhhhhccCCCCCC--CCccchHHHHHHHHH-HcCCEEEEEecCCceEEEEEEEe
Q 037299 1046 LPPELVQDMFHSSRWM--TQEGLGLSMCRKILK-LMNGEVQYIRESERCYFLIIFEL 1099 (1111)
Q Consensus 1046 Ip~e~~~~iFepf~~~--~G~GLGL~i~r~iVe-~~gG~I~v~s~~ggstF~~~L~L 1099 (1111)
||++.++++|+||+.+ +|+||||++||++|+ .|||++++++.++|++|+|+||+
T Consensus 288 i~~~~~~~if~~f~~~~~~g~GlGL~i~~~~v~~~~gg~i~~~~~~~Gt~f~i~lP~ 344 (349)
T 3a0r_A 288 IPEELKEKIFSPFFTTKTQGTGLGLSICRKIIEDEHGGKIWTENRENGVVFIFEIPK 344 (349)
T ss_dssp CCGGGGTTTSSSCCCC------CCCTHHHHHHHHTTCSBCCEEECSSEEEEEEEEES
T ss_pred CChHHHhhcCCCCccCCCCCccchHHHHHHHHHHhCCCEEEEEeCCCcEEEEEEecC
Confidence 9999999999999644 589999999999999 89999999998887777766643
No 8
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=100.00 E-value=6.1e-32 Score=297.51 Aligned_cols=233 Identities=18% Similarity=0.295 Sum_probs=192.6
Q ss_pred ecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHHh
Q 037299 854 QIASPELQQALTVQRQQEKKCFARLKELAYICQEIKNPLSGVSFTNSLLEAT---DLTEDQKQLLETSAACEKQMLKIIK 930 (1111)
Q Consensus 854 ~DITer~~~e~el~~~~e~~~~~r~~~La~isHEIrnPLt~I~~~~~LL~~~---~l~e~~~~~l~~i~~~~~~l~~lI~ 930 (1111)
+|+|++++.+ +.++....+.+|++.++|||||||++|.++++++... ...++.+++++.+...+.+|..+++
T Consensus 2 ~~it~~~~~~-----~l~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~ 76 (258)
T 2c2a_A 2 ENVTESKELE-----RLKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLLN 76 (258)
T ss_dssp CCHHHHHHHH-----HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTGGGCCTTTTHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHH-----HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677766544 2333445667899999999999999999999988643 2345567899999999999999999
Q ss_pred hc-cccccccCCcceeeEeecHHHHHHHHHHHHHHHhhccCcEEEeecCCcccceEEEecHHHHHHHHHHHHHHHhhcCC
Q 037299 931 DV-DLESIEDGSLEFEKAEFLLGSVINAVVSQVMMLLRERNLQLIRDIPEEIKTLAVYGDQARIQQVLADFLLNMVRYSP 1009 (1111)
Q Consensus 931 dL-dlsri~~g~~~l~~~~~~L~~vi~~v~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~D~~~L~qVl~nLl~NAik~t~ 1009 (1111)
++ ++++++.+...+...++++.++++.++..+...+..+++.+.++.....+ ..+++|+..|.|||.||+.||+||++
T Consensus 77 ~ll~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~d~~~l~~il~NLl~NAik~~~ 155 (258)
T 2c2a_A 77 ELLDFSRLERKSLQINREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCP-VEAYIDPTRIRQVLLNLLNNGVKYSK 155 (258)
T ss_dssp HHHHHHHHHHTCCCCCCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESSCSC-CEEEECHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhhCCCccCccceecHHHHHHHHHHHHHHHHHHcCcEEEeecCCCCC-ceEEeCHHHHHHHHHHHHHHHHhcCc
Confidence 97 99999988888899999999999999999999999999998877653332 36889999999999999999999987
Q ss_pred CC--CceEEEEEEEccccCCCCceeEEEEEEEeeCCCCCChhhhhhccCCCCCC--------CCccchHHHHHHHHHHcC
Q 037299 1010 SA--EGWVEIHVRPTLKQSSEGQTIVHNEFRMVCPGEGLPPELVQDMFHSSRWM--------TQEGLGLSMCRKILKLMN 1079 (1111)
Q Consensus 1010 ~~--~g~I~I~v~~~~~~~~~~~~~~~v~i~V~DnG~GIp~e~~~~iFepf~~~--------~G~GLGL~i~r~iVe~~g 1079 (1111)
.. .+.|.|.+....+ .+.|+|.|||+|||++.++++|+||+.. .|+||||+|||++++.||
T Consensus 156 ~~~~~~~i~i~~~~~~~---------~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~G~GLGL~i~~~iv~~~g 226 (258)
T 2c2a_A 156 KDAPDKYVKVILDEKDG---------GVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHG 226 (258)
T ss_dssp TTCTTCEEEEEEEEETT---------EEEEEEEECSSCCCGGGTTGGGSTTCCCC---------CCCTHHHHHHHHHHTT
T ss_pred CCCCceeEEEEEecCCC---------eEEEEEEecCCCCCHHHHHhhccccccCCCCCCCCCCCcchHHHHHHHHHHHcC
Confidence 52 2568887766555 8899999999999999999999998632 389999999999999999
Q ss_pred CEEEEEecCC-ceEEEEEEEeeCCC
Q 037299 1080 GEVQYIRESE-RCYFLIIFELPMPR 1103 (1111)
Q Consensus 1080 G~I~v~s~~g-gstF~~~L~LP~~~ 1103 (1111)
|+|++.|.++ |++|+|+| |...
T Consensus 227 G~i~v~s~~~~Gt~f~i~l--P~~~ 249 (258)
T 2c2a_A 227 GRIWVESEVGKGSRFFVWI--PKDR 249 (258)
T ss_dssp CEEEEEEETTTEEEEEEEE--ECCC
T ss_pred CEEEEEecCCCCcEEEEEe--eCCC
Confidence 9999999877 56666655 5543
No 9
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=99.97 E-value=1.7e-29 Score=279.28 Aligned_cols=223 Identities=20% Similarity=0.321 Sum_probs=195.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHHhhc-cccccccCCcceeeE
Q 037299 870 QEKKCFARLKELAYICQEIKNPLSGVSFTNSLLEAT-DLTEDQKQLLETSAACEKQMLKIIKDV-DLESIEDGSLEFEKA 947 (1111)
Q Consensus 870 ~e~~~~~r~~~La~isHEIrnPLt~I~~~~~LL~~~-~l~e~~~~~l~~i~~~~~~l~~lI~dL-dlsri~~g~~~l~~~ 947 (1111)
.++....+.++++.++|||||||++|.++++++... ...++.+++++.+.+..+++..+++++ +++++..+...+...
T Consensus 33 l~~~~~~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~ 112 (268)
T 4ew8_A 33 LAEAERLKRDFVGNVSYELRTPLTTIIGYSELLERADGISERGRNHVAAVRAAATQLARSIDDVLDMAQIDAGEMALEIE 112 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCE
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcceeee
Confidence 334455667899999999999999999999999764 467888999999999999999999997 999999998899999
Q ss_pred eecHHHHHHHHHHHHHHHhhccCcEEEeecCCcccceEEEecHHHHHHHHHHHHHHHhhcCCCCCceEEEEEEEccccCC
Q 037299 948 EFLLGSVINAVVSQVMMLLRERNLQLIRDIPEEIKTLAVYGDQARIQQVLADFLLNMVRYSPSAEGWVEIHVRPTLKQSS 1027 (1111)
Q Consensus 948 ~~~L~~vi~~v~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~D~~~L~qVl~nLl~NAik~t~~~~g~I~I~v~~~~~~~~ 1027 (1111)
++++..++++++..+...+..+++.+.++++++.+ .+.+|+..|.+||.||+.||+||++. ++.|.|++....+
T Consensus 113 ~~~l~~~l~~~~~~~~~~~~~~~i~i~~~~~~~~~--~v~~d~~~l~~il~nLl~NA~~~~~~-~~~I~i~~~~~~~--- 186 (268)
T 4ew8_A 113 DIRVSDLLLNAQERALKDAQLGGVTLAVECEEDVG--LIRGDGKRLAQTLDHLVENALRQTPP-GGRVTLSARRALG--- 186 (268)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHTTCEEEEECCTTSC--EEEECHHHHHHHHHHHHHHHHHHSCT-TCEEEEEEEECSS---
T ss_pred eccHHHHHHHHHHHHHhhhhccCceEEEEcCCCCc--eEecCHHHHHHHHHHHHHHHHHhCCC-CCEEEEEEEecCC---
Confidence 99999999999999999999999999999988765 68999999999999999999999987 7899999887666
Q ss_pred CCceeEEEEEEEeeCCCCCChhhhhhccCCCC--CCCCccchHHHHHHHHHHcCCEEEEEecCC-ceEEEEEEEeeCCCC
Q 037299 1028 EGQTIVHNEFRMVCPGEGLPPELVQDMFHSSR--WMTQEGLGLSMCRKILKLMNGEVQYIRESE-RCYFLIIFELPMPRR 1104 (1111)
Q Consensus 1028 ~~~~~~~v~i~V~DnG~GIp~e~~~~iFepf~--~~~G~GLGL~i~r~iVe~~gG~I~v~s~~g-gstF~~~L~LP~~~~ 1104 (1111)
.+.|+|+|||+|||++.++++|+||+ +.+|+||||++|+++++.|||+|++.+.++ |++|+|+| |....
T Consensus 187 ------~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~~g~GlGL~i~~~~~~~~gG~i~i~s~~~~Gt~~~i~l--P~~~~ 258 (268)
T 4ew8_A 187 ------EVRLDVSDTGRGVPFHVQAHIFDRFVGRDRGGPGLGLALVKALVELHGGWVALESEPGNGSTFTCHL--PETQQ 258 (268)
T ss_dssp ------EEEEEEEESSCCCCHHHHTTTTSTTCCCSSCCCTTHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEE--ECCC-
T ss_pred ------EEEEEEEcCCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHcCCEEEEEecCCCCEEEEEEe--cCCCC
Confidence 89999999999999999999999985 456899999999999999999999999987 46655554 55544
Q ss_pred CC
Q 037299 1105 GS 1106 (1111)
Q Consensus 1105 ~~ 1106 (1111)
..
T Consensus 259 ~~ 260 (268)
T 4ew8_A 259 PG 260 (268)
T ss_dssp --
T ss_pred CC
Confidence 33
No 10
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=99.97 E-value=2.9e-30 Score=282.29 Aligned_cols=226 Identities=10% Similarity=0.075 Sum_probs=158.9
Q ss_pred CCCEEEEEeeeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 037299 843 EGQIVGAFCFLQIASPELQQALTVQRQQEKKCFARLKELAYICQEIKNPLSGVSFTNSLLEATDLTEDQKQLLETSAACE 922 (1111)
Q Consensus 843 ~G~v~g~v~~~~DITer~~~e~el~~~~e~~~~~r~~~La~isHEIrnPLt~I~~~~~LL~~~~l~e~~~~~l~~i~~~~ 922 (1111)
.|....+...++|+|.++.++.+++.....+ -+.+.|+|||||||++|.+++++|++...++...++++.|.+..
T Consensus 17 ~g~~~~~~~~~~e~~~~~~~e~~~~~~~laa-----llas~IaHELrtPL~~I~~~~elL~~~~~~~~~~~~l~~I~~~~ 91 (247)
T 4fpp_A 17 RGSHNQMTETVTETTAPASPEADVQGPDFAA-----MLAARLCHDFISPASAIVSGLDLLEDPSAQDMRDDAMNLIASSA 91 (247)
T ss_dssp --------------------------CHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHCTTCGGGHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHhhHHHHHH-----HHHhccCHHHhHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 4555566778889998877665544322211 15678999999999999999999998877788888999999999
Q ss_pred HHHHHHHhhccccccccCCcceeeEeecHHHHHHHHHHHHHHHhhccCcEEEeecCCcccceEEEecHHHHHHHHHHHHH
Q 037299 923 KQMLKIIKDVDLESIEDGSLEFEKAEFLLGSVINAVVSQVMMLLRERNLQLIRDIPEEIKTLAVYGDQARIQQVLADFLL 1002 (1111)
Q Consensus 923 ~~l~~lI~dLdlsri~~g~~~l~~~~~~L~~vi~~v~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~D~~~L~qVl~nLl~ 1002 (1111)
+++..+++.+ ++..+. .....++++.++. ..+...+..+++++..+.++.. + +..+.|++.||+.
T Consensus 92 ~~~~~ll~~~---r~~~~~-~~~~~~~~~~~l~----~~~~~~~~~~~i~l~~~~~~~~----~---~~~~~qvl~NLl~ 156 (247)
T 4fpp_A 92 RKLADLLQFT---RVAFGA-SASAENFDSRELE----KLAQGVFAHVRPTLDWQIEPQA----M---NKPSSRAVLNIAQ 156 (247)
T ss_dssp HHHHHHHHHH---HHHTTC-CSSCCCEEHHHHH----HHHHHHHTTSSSEEEECCCSCE----E---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HHhhcc-ccccccccHHHHH----HHHHHHHHhhhhhccccccchh----h---hHHHHHHHHHHHH
Confidence 9988887643 322222 2244567776643 3445556678899988877642 2 4678899999999
Q ss_pred HHhhcCCCCCceEEEEEEEccccCCCCceeEEEEEEEeeCCCC--CChhhhhhccCCCCCC--CCccchHHHHHHHHHHc
Q 037299 1003 NMVRYSPSAEGWVEIHVRPTLKQSSEGQTIVHNEFRMVCPGEG--LPPELVQDMFHSSRWM--TQEGLGLSMCRKILKLM 1078 (1111)
Q Consensus 1003 NAik~t~~~~g~I~I~v~~~~~~~~~~~~~~~v~i~V~DnG~G--Ip~e~~~~iFepf~~~--~G~GLGL~i~r~iVe~~ 1078 (1111)
||+||++. +|.|+|++...++ .+.|+|+|+|+| ||++..+++|++|+.. .|+||||+|||+||+.|
T Consensus 157 NA~~a~~~-gg~I~v~~~~~~~---------~~~i~V~D~G~Gi~i~~~~~~~~f~~~~~~~~~G~GLGLai~~~iv~~h 226 (247)
T 4fpp_A 157 IAASALPA-GGVATVKGVAADG---------RFSIIADAKGPRARLRPEVLAGLKGEPLAEGLGGPWVQAAYLNALVRAA 226 (247)
T ss_dssp HHHTTCTT-CCEEEEEEEEETT---------EEEEEEEEESTTCCCCHHHHHHHTTCCCCSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHhcCC-CCeEEEEEEEECC---------EEEEEEEEcCCCCCCCHHHHHHhcCCCCCCCCCCccHHHHHHHHHHHHc
Confidence 99999998 8899999987766 788888899877 7799999999998544 48999999999999999
Q ss_pred CCEEEEEecCCceEEEEEEE
Q 037299 1079 NGEVQYIRESERCYFLIIFE 1098 (1111)
Q Consensus 1079 gG~I~v~s~~ggstF~~~L~ 1098 (1111)
||+|+++|.+||++|+|+||
T Consensus 227 GG~i~v~s~~~G~~f~v~LP 246 (247)
T 4fpp_A 227 GGQIAVEIGEDRASIAAWVP 246 (247)
T ss_dssp TCEEEEEEETTEEEEEEEEE
T ss_pred CCEEEEEEcCCEEEEEEEec
Confidence 99999999998888777664
No 11
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=99.96 E-value=1e-29 Score=272.40 Aligned_cols=211 Identities=17% Similarity=0.244 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHHhhc-cccccccCCcceeeEeecHHHH
Q 037299 877 RLKELAYICQEIKNPLSGVSFTNSLLEATDL-TEDQKQLLETSAACEKQMLKIIKDV-DLESIEDGSLEFEKAEFLLGSV 954 (1111)
Q Consensus 877 r~~~La~isHEIrnPLt~I~~~~~LL~~~~l-~e~~~~~l~~i~~~~~~l~~lI~dL-dlsri~~g~~~l~~~~~~L~~v 954 (1111)
+.+|++.++|||||||++|.++++++..... .+...++++.+.+..+++..+++++ ++++++.+.......++++.++
T Consensus 2 ~~~~~~~~~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~l~~~ 81 (222)
T 3jz3_A 2 ERRFTSDAAHELRSPLTALKVQTEVAQLSDDDPQARKKALLQLHSGIDRATRLVDQLLTLSRLDSLDNLQDVAEIPLEDL 81 (222)
T ss_dssp --------------------------------------CEECCC-CHHHHHHHHHHHHHHHTCCCSTTSTTCEEEEHHHH
T ss_pred HHHHHHHHhHHhcCcHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccCcccCCHHHH
Confidence 4578899999999999999999998875433 3444677888888899999999997 9999988888889999999999
Q ss_pred HHHHHHHHHHHhhccCcEEEeecCCcccceEEEecHHHHHHHHHHHHHHHhhcCCCCCceEEEEEEEccccCCCCceeEE
Q 037299 955 INAVVSQVMMLLRERNLQLIRDIPEEIKTLAVYGDQARIQQVLADFLLNMVRYSPSAEGWVEIHVRPTLKQSSEGQTIVH 1034 (1111)
Q Consensus 955 i~~v~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~D~~~L~qVl~nLl~NAik~t~~~~g~I~I~v~~~~~~~~~~~~~~~ 1034 (1111)
+++++..+...+..+++.+.++++++.+ .+.+|+..|.|||.||+.||+||++. ++.|.|++. .. .
T Consensus 82 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~d~~~l~~il~nLl~NAi~~~~~-~~~i~i~~~--~~---------~ 147 (222)
T 3jz3_A 82 LQSSVMDIYHTAQQAKIDVRLTLNAHSI--KRTGQPLLLSLLVRNLLDNAVRYSPQ-GSVVDVTLN--AD---------N 147 (222)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEESSCSC--EEEECHHHHHHHHHHHHHHHHHTCCT-TCEEEEEEC--SS---------E
T ss_pred HHHHHHHHHHHHHHhCCeEEEeeCCcce--EEecCHHHHHHHHHHHHHHHHHcCCC-CCeEEEEEc--cC---------e
Confidence 9999999999999999999999887643 68899999999999999999999987 677777753 22 2
Q ss_pred EEEEEeeCCCCCChhhhhhccCCCCCC-----CCccchHHHHHHHHHHcCCEEEEEecCCceEEEEEEEeeCCCC
Q 037299 1035 NEFRMVCPGEGLPPELVQDMFHSSRWM-----TQEGLGLSMCRKILKLMNGEVQYIRESERCYFLIIFELPMPRR 1104 (1111)
Q Consensus 1035 v~i~V~DnG~GIp~e~~~~iFepf~~~-----~G~GLGL~i~r~iVe~~gG~I~v~s~~ggstF~~~L~LP~~~~ 1104 (1111)
|.|.|||+|||++.++++|+||+.. +|+||||++||++++.|||+|+++|.++++| +|++.+|....
T Consensus 148 --i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~g~GlGL~i~~~i~~~~gG~i~i~s~~~~Gt-~v~~~~P~~~~ 219 (222)
T 3jz3_A 148 --FIVRDNGPGVTPEALARIGERFYRPPGQTATGSGLGLSIVQRIAKLHGMNVEFGNAEQGGF-EAKVSWLEHHH 219 (222)
T ss_dssp --EEEECSCC--------------------------CTHHHHHHHHHHTTCEEECCBCTTSSB-EEEEECCCC--
T ss_pred --EEEEECCCCCCHHHHHHHHhhhccCCCCCCCcccccHHHHHHHHHHcCCEEEEEcCCCCcE-EEEEeecCCCC
Confidence 8899999999999999999998542 3899999999999999999999999988543 55556666543
No 12
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=99.96 E-value=1.4e-27 Score=259.71 Aligned_cols=209 Identities=19% Similarity=0.239 Sum_probs=178.2
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHHhhc-cccccccCCcceeeEeecH
Q 037299 874 CFARLKELAYICQEIKNPLSGVSFTNSLLEATDL-TEDQKQLLETSAACEKQMLKIIKDV-DLESIEDGSLEFEKAEFLL 951 (1111)
Q Consensus 874 ~~~r~~~La~isHEIrnPLt~I~~~~~LL~~~~l-~e~~~~~l~~i~~~~~~l~~lI~dL-dlsri~~g~~~l~~~~~~L 951 (1111)
...+.++++.++|||||||++|.++++++..... .++.+++++.+.+..+++..+++++ ++.+...+ ...++++
T Consensus 11 ~~~~~~~~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~~~~----~~~~~~l 86 (244)
T 3d36_A 11 MEAVTHLAASISHEIRNPLTAARGFIQLIEEQPLAADKRRQYARIAIEELDRAEAIITDYLTFAKPAPE----TPEKLNV 86 (244)
T ss_dssp ------CCCCHHHHHHHHHHHHHHHHHHGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCC----CCEEEEH
T ss_pred HHHHHHHHHHhhHHhccHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC----CcchhhH
Confidence 3445678899999999999999999999987654 4566889999999999999999997 88886543 5689999
Q ss_pred HHHHHHHHHHHHHHhhccCcEEEeecCCcccceEEEecHHHHHHHHHHHHHHHhhcCCCCCceEEEEEEEccccCCCCce
Q 037299 952 GSVINAVVSQVMMLLRERNLQLIRDIPEEIKTLAVYGDQARIQQVLADFLLNMVRYSPSAEGWVEIHVRPTLKQSSEGQT 1031 (1111)
Q Consensus 952 ~~vi~~v~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~D~~~L~qVl~nLl~NAik~t~~~~g~I~I~v~~~~~~~~~~~~ 1031 (1111)
..++++++..+...+..+++.+.++.++ ..+.+|+..|.+||.||+.||+||++. ++.|.|++...++
T Consensus 87 ~~~l~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~d~~~l~~il~nLl~NA~~~~~~-~~~i~i~~~~~~~------- 154 (244)
T 3d36_A 87 KLEIERVIDILRPLANMSCVDIQATLAP----FSVIGEREKFRQCLLNVMKNAIEAMPN-GGTLQVYVSIDNG------- 154 (244)
T ss_dssp HHHHHHHHHHHHHHHTTTTEEEEEECCC----CEEEECHHHHHHHHHHHHHHHHHTCTT-CEEEEEEEEEETT-------
T ss_pred HHHHHHHHHHHHHHHHhcCeEEeccCCC----ceEEeCHHHHHHHHHHHHHHHHHhccC-CCeEEEEEEEeCC-------
Confidence 9999999999999999999999888765 268999999999999999999999976 7899999887665
Q ss_pred eEEEEEEEeeCCCCCChhhhhhccCCCCCC---CCccchHHHHHHHHHHcCCEEEEEecCC-ceEEEEEEEee
Q 037299 1032 IVHNEFRMVCPGEGLPPELVQDMFHSSRWM---TQEGLGLSMCRKILKLMNGEVQYIRESE-RCYFLIIFELP 1100 (1111)
Q Consensus 1032 ~~~v~i~V~DnG~GIp~e~~~~iFepf~~~---~G~GLGL~i~r~iVe~~gG~I~v~s~~g-gstF~~~L~LP 1100 (1111)
.+.|+|.|+|+|||++..+++|+||+.. .|.|+||++|+++++.|||+|++.+.++ |++|+|+||+.
T Consensus 155 --~~~i~i~D~G~gi~~~~~~~if~~~~~~~~~~g~GlGL~i~~~i~~~~gG~i~~~~~~~~G~~~~i~lP~~ 225 (244)
T 3d36_A 155 --RVLIRIADTGVGMTKEQLERLGEPYFTTKGVKGTGLGMMVVYRIIESMNGTIRIESEIHKGTTVSIYLPLA 225 (244)
T ss_dssp --EEEEEEEECSSCCCHHHHHHTTSTTCCSSGGGCCSCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEECC
T ss_pred --EEEEEEEecCCCCCHHHHHHHhcccccCCCCCCcchhHHHHHHHHHHcCCEEEEEecCCCcEEEEEEecCC
Confidence 8999999999999999999999998654 4889999999999999999999999876 56666655443
No 13
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=99.96 E-value=9.3e-28 Score=280.29 Aligned_cols=216 Identities=10% Similarity=0.040 Sum_probs=185.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhc-cccccccCCcceeeEee
Q 037299 872 KKCFARLKELAYICQEIKNPLSGVS-FTNSLLEATDLTEDQKQLLETSAACEKQMLKIIKDV-DLESIEDGSLEFEKAEF 949 (1111)
Q Consensus 872 ~~~~~r~~~La~isHEIrnPLt~I~-~~~~LL~~~~l~e~~~~~l~~i~~~~~~l~~lI~dL-dlsri~~g~~~l~~~~~ 949 (1111)
+....+.++++.++||+||||+.|. ++.+++......++.+++++.+..+..+|..+++++ ++++++.+...+...++
T Consensus 116 ~~~~~~~~~l~~i~helrtpL~~i~~g~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~l~~~~~~~~~~~~~~~ 195 (388)
T 1gkz_A 116 ADEAQYCQLVRQLLDDHKDVVTLLAEGLRESRKHIEDEKLVRYFLDKTLTSRLGIRMLATHHLALHEDKPDFVGIICTRL 195 (388)
T ss_dssp HHHHHHHHHHHHHHHHTTTHHHHHHHHHHHSSSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCTTEETTEEEEE
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccceecCCC
Confidence 3455677899999999999999999 777777655557788999999999999999999996 99999999999999999
Q ss_pred cHHHHHHHHHHHHHHHhhcc-----CcEEEeecCCcccceEEEecHHHHHHHHHHHHHHHhhcCCCCCc--------eEE
Q 037299 950 LLGSVINAVVSQVMMLLRER-----NLQLIRDIPEEIKTLAVYGDQARIQQVLADFLLNMVRYSPSAEG--------WVE 1016 (1111)
Q Consensus 950 ~L~~vi~~v~~~~~~~~~~~-----~i~l~~~~~~~~~~~~v~~D~~~L~qVl~nLl~NAik~t~~~~g--------~I~ 1016 (1111)
++.+++++++..+...+..+ ++.+..+.+. .+.+|+.+|.|||.|||.||+||++. ++ .|.
T Consensus 196 ~l~~li~~~~~~~~~~~~~~~g~~~~i~i~~~~~~-----~~~~~~~~L~~il~NLl~NAik~~~~-~~~~~~~~~~~I~ 269 (388)
T 1gkz_A 196 SPKKIIEKWVDFARRLCEHKYGNAPRVRINGHVAA-----RFPFIPMPLDYILPELLKNAMRATME-SHLDTPYNVPDVV 269 (388)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSCCCCEEEEESTTC-----CEEECCHHHHHHHHHHHHHHHHHHHH-TCTTCTTSCCCEE
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCCCcEEEEccCCC-----ceeecHHHHHHHHHHHHHHHHHHhhc-cccCCCCCCCCEE
Confidence 99999999999999998887 5666554432 47899999999999999999999876 33 899
Q ss_pred EEEEEccccCCCCceeEEEEEEEeeCCCCCChhhhhhccCCCCCC----------------------------CCccchH
Q 037299 1017 IHVRPTLKQSSEGQTIVHNEFRMVCPGEGLPPELVQDMFHSSRWM----------------------------TQEGLGL 1068 (1111)
Q Consensus 1017 I~v~~~~~~~~~~~~~~~v~i~V~DnG~GIp~e~~~~iFepf~~~----------------------------~G~GLGL 1068 (1111)
|++....+ .+.|+|+|+|+|||++.++++|+||+++ .|+||||
T Consensus 270 I~~~~~~~---------~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~GLGL 340 (388)
T 1gkz_A 270 ITIANNDV---------DLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQDPRISPLFGHLDMHSGGQSGPMHGFGFGL 340 (388)
T ss_dssp EEEEECSS---------EEEEEEECCSCCCCTTTTTTTTSTTCCCC-------------------------CCSCSSCHH
T ss_pred EEEEeCCC---------EEEEEEEEeCCCcCHHHHHHhcCcccccCCCcccccccccchhhcccccccCCCCcCCccCCH
Confidence 99877655 8999999999999999999999998532 4899999
Q ss_pred HHHHHHHHHcCCEEEEEecCC-ceEEEEEEEeeCCCC
Q 037299 1069 SMCRKILKLMNGEVQYIRESE-RCYFLIIFELPMPRR 1104 (1111)
Q Consensus 1069 ~i~r~iVe~~gG~I~v~s~~g-gstF~~~L~LP~~~~ 1104 (1111)
+|||.+++.|||+|++.|.+| |++|+|+| |....
T Consensus 341 ~i~r~i~~~~gG~i~v~s~~g~Gt~f~i~L--P~~~~ 375 (388)
T 1gkz_A 341 PTSRAYAEYLGGSLQLQSLQGIGTDVYLRL--RHIDG 375 (388)
T ss_dssp HHHHHHHHHTTCEEEEEEETTTEEEEEEEE--ECSSS
T ss_pred HHHHHHHHHhCCEEEEEecCCCcEEEEEEe--cCCCC
Confidence 999999999999999999987 56666655 55443
No 14
>4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A*
Probab=99.95 E-value=9.1e-30 Score=261.63 Aligned_cols=129 Identities=23% Similarity=0.288 Sum_probs=116.2
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHHhhCCCeEEEEeecCCCCcEEEEEecCCCCCCccCCCCCCCCchHHHHHHHHhCCe
Q 037299 224 ISQLQSLPGGDIKLLCDTVVESVRQLTGYDRVMVYRFHEDEHGEVVAESKRPDLEPYFGLHYPATDIPQASRFLFKQNRV 303 (1111)
Q Consensus 224 i~~l~~~~~~~~~~l~~~~~~~vr~~~g~DRVmiY~F~~d~~G~VvaE~~~~~~~~~lg~~~pa~dip~~ar~ly~~n~~ 303 (1111)
..+|++ +.|++++++++|++||+++|+||||||+|++||+|+||||++.++++|++|++||++|||.+++++|.++++
T Consensus 3 a~~Ir~--sldl~~il~~~v~~v~~~l~~DRv~Iy~f~~d~~g~vvaE~~~~~~~s~lg~~~~~~~~~~~~~~~~~~g~~ 80 (171)
T 4glq_A 3 AVQLSE--LRDRQAIFETLVAKGRELLACDRVIVYAFDDNYVGTVVAESVAEGWPQARDQVIEDPCFREHWVEAYRQGRI 80 (171)
T ss_dssp -----C--TTHHHHHHHHHHHHHHHHHTCSEEEEEEECTTCCEEEEEEEECTTSCCCTTCEECCTHHHHHTHHHHHTTCC
T ss_pred HHHHhh--cCCHHHHHHHHHHHHHHHHCCCeEEEEEEeCCCCeEEEEEEcCCCCccccCCccCccccHHHHHHHHHcCCE
Confidence 457888 789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeeccCCCcceeecCCCCCCcccccCccccCCChhHHHHHHhcCcceEEEEEEEEcCCCcccc--CCCCCccch
Q 037299 304 RMIVDCHATPLCVIQDEGLMQPLCLVGSTLRAPHGCHAQYMANMGSIASLALAVIINGNDEEAV--GGRSTTRLW 376 (1111)
Q Consensus 304 r~i~d~~~~~~~~~~~~~~~~~ldls~~~lRsvsp~h~~yl~nmgv~asl~~~i~~~~~~~~~~--~~~~~~~LW 376 (1111)
++|+|+++.+ ++|||.+||++|||+|+|++||+.+|++||+. ..+...+-|
T Consensus 81 ~~I~Dv~~~~----------------------~~~~~~~~l~~~~v~S~L~vPi~~~~~l~GlL~~~~~~~~r~w 133 (171)
T 4glq_A 81 QATTDIFKAG----------------------LTECHLNQLRPLKVRANLVVPMVIDDQLFGLLIAHQASEPRQW 133 (171)
T ss_dssp EEESCGGGTT----------------------CCHHHHHHHGGGTEEEEEEEEEEETTEEEEEEEEEEESSCCCC
T ss_pred EEEcCcCcCC----------------------CCHHHHHHHHhcCCcEEEEEEEEECCEEEEEEEEEeCCCCCCC
Confidence 9999997653 45999999999999999999999999999876 344677888
No 15
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=99.95 E-value=1.3e-26 Score=271.03 Aligned_cols=210 Identities=12% Similarity=0.113 Sum_probs=166.3
Q ss_pred HHHHHHHHHhhh-----HHHHHHHHHHHHhcCCCCH----HHHHHHH--HHHHHHHHHHHHHhhc-ccccccc-CCccee
Q 037299 879 KELAYICQEIKN-----PLSGVSFTNSLLEATDLTE----DQKQLLE--TSAACEKQMLKIIKDV-DLESIED-GSLEFE 945 (1111)
Q Consensus 879 ~~La~isHEIrn-----PLt~I~~~~~LL~~~~l~e----~~~~~l~--~i~~~~~~l~~lI~dL-dlsri~~-g~~~l~ 945 (1111)
++++.++||||| ||+.|.++++++.....++ +..++++ .+.+...+| +++++ ++++.+. +...+.
T Consensus 97 ~~~~~~~HeLrtpl~~vPlt~i~g~~ell~~~~~~~~~~~~~~~~l~~~~i~~~~~rl--li~~ll~l~~~~~~~~~~~~ 174 (394)
T 2btz_A 97 SQFTDALVTIRNRHNDVVPTMAQGVLEYKDTYGDDPVSNQNIQYFLDRFYLSRISIRM--LINQHTLIFDGSTNPAHPKH 174 (394)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCC--------CC
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHhhhHHHH--HHHHHHHHhcccccCCCCcc
Confidence 468889999999 9999999999998654443 3444777 377778888 99996 9999877 566677
Q ss_pred e----EeecHHHHHHHHHHHHHHHhhc-----cCcEEEeec---CCcccceEEEecHHHHHHHHHHHHHHHhhcCCCCC-
Q 037299 946 K----AEFLLGSVINAVVSQVMMLLRE-----RNLQLIRDI---PEEIKTLAVYGDQARIQQVLADFLLNMVRYSPSAE- 1012 (1111)
Q Consensus 946 ~----~~~~L~~vi~~v~~~~~~~~~~-----~~i~l~~~~---~~~~~~~~v~~D~~~L~qVl~nLl~NAik~t~~~~- 1012 (1111)
. .++++.+++++++..+...+.. +++++.+.. ++. ...+.+|+..|.|||.|||.||+||++..+
T Consensus 175 ~g~i~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~--~~~v~~d~~~L~~il~NLl~NAik~~~~~~~ 252 (394)
T 2btz_A 175 IGSIDPNCNVSEVVKDAYDMAKLLCDKYYMASPDLEIQEINAANSKQ--PIHMVYVPSHLYHMLFELFKNAMRATVESHE 252 (394)
T ss_dssp BTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTS--CCEEEECHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cceecCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEEEeccCCCCC--CeEEEecHHHHHHHHHHHHHHHHHHhhhccc
Confidence 7 8999999999999999999886 888888743 222 237999999999999999999999998722
Q ss_pred -----ceEEEEEEEccccCCCCceeEEEEEEEeeCCCCCChhhhhhccCCCCCC-------------CCccchHHHHHHH
Q 037299 1013 -----GWVEIHVRPTLKQSSEGQTIVHNEFRMVCPGEGLPPELVQDMFHSSRWM-------------TQEGLGLSMCRKI 1074 (1111)
Q Consensus 1013 -----g~I~I~v~~~~~~~~~~~~~~~v~i~V~DnG~GIp~e~~~~iFepf~~~-------------~G~GLGL~i~r~i 1074 (1111)
+.|+|++....+ .+.|+|+|+|+|||++.++++|+||+.+ +|+||||+|||.+
T Consensus 253 ~~~~~~~I~I~~~~~~~---------~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~~~~~~~G~GLGL~i~~~i 323 (394)
T 2btz_A 253 SSLILPPIKVMVALGEE---------DLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPGTGGTPLAGFGYGLPISRLY 323 (394)
T ss_dssp TCSCCCCEEEEEEECSS---------EEEEEEEECSCCCCHHHHHHHTCTTTTCCC--------------CCHHHHHHHH
T ss_pred cCCCCCCEEEEEEeCCC---------EEEEEEEeCCCCCCHHHHHHHhcccccCCCCCCcccCCCCCCCccCCHHHHHHH
Confidence 269999877665 8999999999999999999999998532 3899999999999
Q ss_pred HHHcCCEEEEEecCC-ceEEEEEEEeeCCC
Q 037299 1075 LKLMNGEVQYIRESE-RCYFLIIFELPMPR 1103 (1111)
Q Consensus 1075 Ve~~gG~I~v~s~~g-gstF~~~L~LP~~~ 1103 (1111)
++.|||+|++.|.+| |++|+|+| |...
T Consensus 324 ~~~~gG~i~v~s~~g~Gt~f~i~l--P~~~ 351 (394)
T 2btz_A 324 AKYFQGDLQLFSMEGFGTDAVIYL--KALS 351 (394)
T ss_dssp HHHTTCEEEEEEETTTEEEEEEEE--ESST
T ss_pred HHHhCCEEEEEecCCCceEEEEEe--cCCC
Confidence 999999999999877 56666655 5544
No 16
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=99.95 E-value=2.3e-26 Score=268.86 Aligned_cols=207 Identities=14% Similarity=0.175 Sum_probs=172.7
Q ss_pred HHHHHHHHHHhhh-----HHHHHHHHHHHHhcCC----CCHHHHHHHH--HHHHHHHHHHHHHhhc-c-ccccccCCcce
Q 037299 878 LKELAYICQEIKN-----PLSGVSFTNSLLEATD----LTEDQKQLLE--TSAACEKQMLKIIKDV-D-LESIEDGSLEF 944 (1111)
Q Consensus 878 ~~~La~isHEIrn-----PLt~I~~~~~LL~~~~----l~e~~~~~l~--~i~~~~~~l~~lI~dL-d-lsri~~g~~~l 944 (1111)
.++++.++||||| ||+.|.+++++++... ..++..++++ .+.+.+.+| +++++ + +++. .+...+
T Consensus 96 ~~~~~~~~HeLrtpl~~vPlt~i~g~~el~~~~~~~~~~~~~~~~~l~~~~i~~~~~rl--li~~lL~l~~~~-~~~~~~ 172 (394)
T 2e0a_A 96 LSDFVDTLIKVRNRHHNVVPTMAQGIIEYKDACTVDPVTNQNLQYFLDRFYMNRISTRM--LMNQHILIFSDS-QTGNPS 172 (394)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHTTSCCCTTTCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCSS-CCCCTT
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhccCcccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhcc-cCCCCC
Confidence 3467788899999 8999999999887532 4566788888 588888899 88885 6 6666 666666
Q ss_pred ee----EeecHHHHHHHHHHHHHHHhhcc-----CcEEEeec---CCcccceEEEecHHHHHHHHHHHHHHHhhcCCCCC
Q 037299 945 EK----AEFLLGSVINAVVSQVMMLLRER-----NLQLIRDI---PEEIKTLAVYGDQARIQQVLADFLLNMVRYSPSAE 1012 (1111)
Q Consensus 945 ~~----~~~~L~~vi~~v~~~~~~~~~~~-----~i~l~~~~---~~~~~~~~v~~D~~~L~qVl~nLl~NAik~t~~~~ 1012 (1111)
.. .++++.+++++++..+...+..+ ++++.++. ++. ...+.+|+..|.|||.|||.||+||++. +
T Consensus 173 ~~g~i~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~--~~~v~~d~~~L~~il~NLl~NAik~~~~-~ 249 (394)
T 2e0a_A 173 HIGSIDPNCDVVAVVQDAFECSRMLCDQYYLSSPELKLTQVNGKFPDQ--PIHIVYVPSHLHHMLFELFKNAMRATVE-H 249 (394)
T ss_dssp SBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTS--CCEEEECHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred ccccccCCCCHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeccCCCCC--CeEEEEcHHHHHHHHHHHHHHHHHHHHh-c
Confidence 67 89999999999999999999888 89998843 222 2379999999999999999999999876 3
Q ss_pred c-------eEEEEEEEccccCCCCceeEEEEEEEeeCCCCCChhhhhhccCCCCCC--------------CCccchHHHH
Q 037299 1013 G-------WVEIHVRPTLKQSSEGQTIVHNEFRMVCPGEGLPPELVQDMFHSSRWM--------------TQEGLGLSMC 1071 (1111)
Q Consensus 1013 g-------~I~I~v~~~~~~~~~~~~~~~v~i~V~DnG~GIp~e~~~~iFepf~~~--------------~G~GLGL~i~ 1071 (1111)
+ .|.|++....+ .+.|+|+|+|+|||++.++++|+||+.+ .|+||||+||
T Consensus 250 ~~~~~~~~~I~I~~~~~~~---------~v~i~V~D~G~GI~~~~~~~if~~f~~~~~~~~~~~~~~~~~~G~GLGL~i~ 320 (394)
T 2e0a_A 250 QENQPSLTPIEVIVVLGKE---------DLTIKISDRGGGVPLRIIDRLFSYTYSTAPTPVMDNSRNAPLAGFGYGLPIS 320 (394)
T ss_dssp TTTSSSCCCEEEEEEECSS---------EEEEEEEECSCCCCGGGHHHHTSTTCCSSCCC------CCCSSCSSCHHHHH
T ss_pred ccccCCCCCEEEEEEeCCC---------EEEEEEEeCCCCcCHHHHHHHhCcCccCCCCCCcCcCCCCCCCCcccCHHHH
Confidence 3 69999877665 8999999999999999999999998533 3899999999
Q ss_pred HHHHHHcCCEEEEEecCC-ceEEEEEEEe
Q 037299 1072 RKILKLMNGEVQYIRESE-RCYFLIIFEL 1099 (1111)
Q Consensus 1072 r~iVe~~gG~I~v~s~~g-gstF~~~L~L 1099 (1111)
|.+++.|||+|++.|.+| |++|+|+||.
T Consensus 321 ~~i~~~~gG~i~v~s~~g~Gt~f~i~lP~ 349 (394)
T 2e0a_A 321 RLYAKYFQGDLNLYSLSGYGTDAIIYLKA 349 (394)
T ss_dssp HHHHHHTTCEEEEEEETTTEEEEEEEEES
T ss_pred HHHHHHhCCEEEEEecCCccEEEEEEeCC
Confidence 999999999999999887 5666665543
No 17
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=99.94 E-value=2.5e-26 Score=269.75 Aligned_cols=206 Identities=14% Similarity=0.137 Sum_probs=167.8
Q ss_pred HHHHHHHHhhh-----HHHHHHHHHHHHhcCCC----CHHHHHHHHH--HHHHHHHHHHHHhhc-ccccccc----C---
Q 037299 880 ELAYICQEIKN-----PLSGVSFTNSLLEATDL----TEDQKQLLET--SAACEKQMLKIIKDV-DLESIED----G--- 940 (1111)
Q Consensus 880 ~La~isHEIrn-----PLt~I~~~~~LL~~~~l----~e~~~~~l~~--i~~~~~~l~~lI~dL-dlsri~~----g--- 940 (1111)
++..++||||| ||+.|.++++++..... .++...+++. +.+...+| +++++ ++++.+. +
T Consensus 108 ~f~~~~HeLrt~~~~vPLt~i~g~~ell~~~~~~~~~~~~~~~~l~~~~~~~~~~rl--li~~ll~l~~~e~~~~~~~~~ 185 (407)
T 2q8g_A 108 DFTDTVIRIRNRHNDVIPTMAQGVIEYKESFGVDPVTSQNVQYFLDRFYMSRISIRM--LLNQHSLLFGGKGKGSPSHRK 185 (407)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHC----------C
T ss_pred HHHHHHHHHHhhhccchHHHHHHHHHHHHhhccCccCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhccccccCCCCcc
Confidence 44555599999 99999999998876433 2445777887 67778888 89996 8888865 3
Q ss_pred CcceeeEeecHHHHHHHHHHHHHHHhhcc-----CcEEEeec---CCcccceEEEecHHHHHHHHHHHHHHHhhcCCCCC
Q 037299 941 SLEFEKAEFLLGSVINAVVSQVMMLLRER-----NLQLIRDI---PEEIKTLAVYGDQARIQQVLADFLLNMVRYSPSAE 1012 (1111)
Q Consensus 941 ~~~l~~~~~~L~~vi~~v~~~~~~~~~~~-----~i~l~~~~---~~~~~~~~v~~D~~~L~qVl~nLl~NAik~t~~~~ 1012 (1111)
...+...++++.+++++++..+...+..+ ++++.++. ++. ...+.+|+..|.|||.|||.||+||++. +
T Consensus 186 ~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~--~~~v~~d~~~L~~il~NLl~NAik~t~~-~ 262 (407)
T 2q8g_A 186 HIGSINPNCNVLEVIKDGYENARRLCDLYYINSPELELEELNAKSPGQ--PIQVVYVPSHLYHMVFELFKNAMRATME-H 262 (407)
T ss_dssp CBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTS--CCEEEECHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred ccccccCCCCHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeecCCCCC--CeEEEEcHHHHHHHHHHHHHHHHHHHhh-c
Confidence 56778899999999999999999998877 89998865 222 2379999999999999999999999876 3
Q ss_pred c-------eEEEEEEEccccCCCCceeEEEEEEEeeCCCCCChhhhhhccCCCCCC--------------CCccchHHHH
Q 037299 1013 G-------WVEIHVRPTLKQSSEGQTIVHNEFRMVCPGEGLPPELVQDMFHSSRWM--------------TQEGLGLSMC 1071 (1111)
Q Consensus 1013 g-------~I~I~v~~~~~~~~~~~~~~~v~i~V~DnG~GIp~e~~~~iFepf~~~--------------~G~GLGL~i~ 1071 (1111)
+ .|+|++....+ .+.|+|+|+|+|||++.++++|+||+.+ +|+||||+||
T Consensus 263 ~~~~~~~~~I~I~~~~~~~---------~v~i~V~D~G~GI~~e~~~~if~~f~~~~~~~~~~~~~~~~~~G~GLGL~Iv 333 (407)
T 2q8g_A 263 HANRGVYPPIQVHVTLGNE---------DLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVETSRAVPLAGFGYGLPIS 333 (407)
T ss_dssp STTTCCCCCEEEEEEECSS---------EEEEEEEECSCCCCHHHHGGGGCTTTTCCCCCCSSCCSCCCSSCTTCHHHHH
T ss_pred cccCCCCCCEEEEEEeCCC---------EEEEEEEecCCCCCHHHHHHHhCccccCCCCCCccccCCCCCCCcCCCHHHH
Confidence 3 79999877655 8999999999999999999999998532 4899999999
Q ss_pred HHHHHHcCCEEEEEecCC-ceEEEEEEEe
Q 037299 1072 RKILKLMNGEVQYIRESE-RCYFLIIFEL 1099 (1111)
Q Consensus 1072 r~iVe~~gG~I~v~s~~g-gstF~~~L~L 1099 (1111)
|.+++.|||+|++.|.+| |++|+|+||.
T Consensus 334 r~i~~~~gG~i~v~s~~g~Gt~f~i~LP~ 362 (407)
T 2q8g_A 334 RLYAQYFQGDLKLYSLEGYGTDAVIYIKA 362 (407)
T ss_dssp HHHHHHTTCEEEEEEETTTEEEEEEEEES
T ss_pred HHHHHHhCCEEEEEEcCCCceEEEEEECC
Confidence 999999999999999887 5666665543
No 18
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=99.94 E-value=1.2e-25 Score=264.90 Aligned_cols=205 Identities=13% Similarity=0.125 Sum_probs=159.0
Q ss_pred HHHHHHHhhhHHH-----HHHHHHHHHhcCCC----CHHHHHHHHHHHHH--HHHHHHHHhhc-ccc-ccccCCcc----
Q 037299 881 LAYICQEIKNPLS-----GVSFTNSLLEATDL----TEDQKQLLETSAAC--EKQMLKIIKDV-DLE-SIEDGSLE---- 943 (1111)
Q Consensus 881 La~isHEIrnPLt-----~I~~~~~LL~~~~l----~e~~~~~l~~i~~~--~~~l~~lI~dL-dls-ri~~g~~~---- 943 (1111)
++.++|||||||+ .|.+++++++.... .++..++++.+... ..++ +++++ .+. +...+...
T Consensus 121 f~~~~HeLrtPL~~vi~~~i~g~~ell~~~~~~~~~~~~~~~~l~~i~~~~~~~rl--li~~lL~l~~~~~~~~~~~~~~ 198 (419)
T 1y8o_A 121 FLQVLIKVRNRHNDVVPTMAQGVIEYKEKFGFDPFISTNIQYFLDRFYTNRISFRM--LINQHTLLFGGDTNPVHPKHIG 198 (419)
T ss_dssp HHHHHHHHHHHGGGHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHSCCSSCSSTTSBT
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhcccccCCCCCccc
Confidence 4567799999999 77899998875322 34566777775544 6677 88885 444 33333332
Q ss_pred eeeEeecHHHHHHHHHHHHHHHhhc-----cCcEEEeec---CCcccceEEEecHHHHHHHHHHHHHHHhhcCCCCCc--
Q 037299 944 FEKAEFLLGSVINAVVSQVMMLLRE-----RNLQLIRDI---PEEIKTLAVYGDQARIQQVLADFLLNMVRYSPSAEG-- 1013 (1111)
Q Consensus 944 l~~~~~~L~~vi~~v~~~~~~~~~~-----~~i~l~~~~---~~~~~~~~v~~D~~~L~qVl~nLl~NAik~t~~~~g-- 1013 (1111)
....++++.+++++++..++..+.. +++.+.+.. ++. ...+.+|+.+|.|||.|||.||+||++. ++
T Consensus 199 ~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~--~~~v~~d~~~L~~vl~NLl~NAik~~~~-~~~~ 275 (419)
T 1y8o_A 199 SIDPTCNVADVVKDAYETAKMLCEQYYLVAPELEVEEFNAKAPDK--PIQVVYVPSHLFHMLFELFKNSMRATVE-LYED 275 (419)
T ss_dssp TBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTS--CCEEEECHHHHHHHHHHHHHHHHHHHHH-HHTT
T ss_pred cccCcCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeeecCCCCC--CeEEEEcHHHHHHHHHHHHHHHHHHHHh-hccc
Confidence 2448999999999999999988866 778887632 222 2379999999999999999999999876 33
Q ss_pred ------eEEEEEEEccccCCCCceeEEEEEEEeeCCCCCChhhhhhccCCCCCC--------------CCccchHHHHHH
Q 037299 1014 ------WVEIHVRPTLKQSSEGQTIVHNEFRMVCPGEGLPPELVQDMFHSSRWM--------------TQEGLGLSMCRK 1073 (1111)
Q Consensus 1014 ------~I~I~v~~~~~~~~~~~~~~~v~i~V~DnG~GIp~e~~~~iFepf~~~--------------~G~GLGL~i~r~ 1073 (1111)
.|+|.+....+ .+.|+|+|+|+|||++.++++|+||+.+ .|+||||+|||.
T Consensus 276 ~~~~~~~I~I~~~~~~~---------~v~I~V~D~G~GI~~e~l~~iF~~f~~~~~~~~~~~~~~~~~~G~GLGL~I~k~ 346 (419)
T 1y8o_A 276 RKEGYPAVKTLVTLGKE---------DLSIKISDLGGGVPLRKIDRLFNYMYSTAPRPSLEPTRAAPLAGFGYGLPISRL 346 (419)
T ss_dssp CSSCCCCEEEEEEECSS---------EEEEEEEECSCCCCHHHHGGGGCTTTC-------------CC--CTTHHHHHHH
T ss_pred cCCCCCCEEEEEEeCCC---------EEEEEEEECCCCCCHHHHHHHhCcccccCCCCCccccCCCCcCCeecCHHHHHH
Confidence 79998877655 8999999999999999999999998532 489999999999
Q ss_pred HHHHcCCEEEEEecCC-ceEEEEEEEe
Q 037299 1074 ILKLMNGEVQYIRESE-RCYFLIIFEL 1099 (1111)
Q Consensus 1074 iVe~~gG~I~v~s~~g-gstF~~~L~L 1099 (1111)
+++.|||+|++.|.+| |++|+|+||.
T Consensus 347 iv~~~gG~I~v~s~~g~Gt~f~i~LP~ 373 (419)
T 1y8o_A 347 YARYFQGDLKLYSMEGVGTDAVIYLKA 373 (419)
T ss_dssp HHHHTTCEEEEEEETTTEEEEEEEEES
T ss_pred HHHHhCCEEEEEecCCCCEEEEEEecC
Confidence 9999999999999987 5666665543
No 19
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=99.93 E-value=5.2e-25 Score=237.10 Aligned_cols=221 Identities=14% Similarity=0.077 Sum_probs=182.8
Q ss_pred cEEEEcCCccEEeecHHHHHHcCCChhhhcCCcccccccchhhHHHHHHHHHHHHcCCCccceEEEEEEeccccCCcEEE
Q 037299 615 PIFAVDVHGCVNGWNAKVAELTGLSVEEAMGKSLVHDLVYKEYEEIVDNLLHHALKGEEDKNVEIKLRTFGAENRKKAVF 694 (1111)
Q Consensus 615 ~I~~~D~dG~I~~~N~a~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~l~~~~~~~dG~~~~ 694 (1111)
.|+++|.+|+|++||+++++++||+++|++|+++. .+.++.........+.+.+..+.....++... ++||..+|
T Consensus 1 ~i~i~D~~g~i~~~N~a~~~l~Gy~~~el~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~----~~dG~~~~ 75 (227)
T 3ewk_A 1 LVSITDLQGRILYANDNFCAVSRYGREELVGQDHR-IVNSGYHGKAYIRDMWRTISRGNIWQGEFCNR----RKDGTRYW 75 (227)
T ss_dssp CEEEEETTCBEEEECHHHHHHTTCCHHHHTTSBGG-GGCCSCSCHHHHHHHHHHHTTTCCEEEEEEEE----CSSSCEEE
T ss_pred CEEEECCCCcEEehHHHHHHHHCcCHHHHcCCCHH-HcCCCCCCHHHHHHHHHHHHcCCeEEEEEEEE----cCCCCEEe
Confidence 47899999999999999999999999999999987 55554443334444445555555544455444 78999999
Q ss_pred EEEEeEeeccCCCCEEEEEEEEEechhHHHHHHHHHhHHHHHHHHHhCCCCCCCCccccCCCCccccchhhhHHHhCCCc
Q 037299 695 VVVNACSSKDYTNNIVGVCFVGQDVTDQKLVMDKFIHIQGDYKAIVHSPNPLIPPIFASDENTCCSEWNTAMEKLTGWSR 774 (1111)
Q Consensus 695 v~v~~~pi~d~~G~v~gvv~v~~DITerK~ae~~L~~se~~l~~i~~~~~~l~~~I~v~D~~g~ii~~N~a~~~l~G~~~ 774 (1111)
+.++..|++|.+|++.+++++.+|||++|+++++|++ ++.+++++++ +|+++|.+|+++++|+++++++||++
T Consensus 76 ~~~~~~p~~d~~g~~~~~~~~~~DIT~~k~~e~~l~~----~~~~~~~~~~---~i~~~d~~g~i~~~N~~~~~~~G~~~ 148 (227)
T 3ewk_A 76 VDSTIVPLMDNAGKPRQYISIRRDITAQKEAEAQLAR----LKQAMDANSE---MILLTDRAGRIIYANPALCRFSGMAE 148 (227)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEECTTTTHHHHHHHH----HHHHHHTCCS---EEEEECTTSCEEEECHHHHHHHTCCT
T ss_pred eeeEEEEEEcCCCCEEEEEEEEEehhhHHHHHHHHHH----HHHHHhcCcC---eEEEEcCCCcEEEEchHHHHHhCCCH
Confidence 9999999999999999999999999999999999865 4566777766 79999999999999999999999999
Q ss_pred cccccccccccccccccccCChhhHHHHHHHHHhhhCCCCcceeeeeeecCCCC------EEEEEEEEeeeecCCCCEEE
Q 037299 775 GDIIGKMLVGEVFGSCCRLKGPDALTKFMIALHNAFGGQDTEKFPFPLFDRNGK------YVQALLTANKRVNMEGQIVG 848 (1111)
Q Consensus 775 eeliGk~l~~~v~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~dG~------~~~v~~~~~pi~d~~G~v~g 848 (1111)
+|++|++... +.++.........+.+.+..+..+..++..++++|. .+|+.++..|++|.+|.+.+
T Consensus 149 ~e~~g~~~~~--------l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~k~G~~~~dg~~~~~~~~~~pi~d~~g~~~~ 220 (227)
T 3ewk_A 149 GELLGQSPSI--------LDSPLADQETLAAMQEALQAGQPWSGRLLNRRRTGPAPHDAEDYWAEISTTPIHTDGNGLVG 220 (227)
T ss_dssp HHHHSSCGGG--------GBCTTSCHHHHHHHHHHHHHTCCEECCEEEEEECCSSSSCEEEEEEEEEEEEEECSSSCEEE
T ss_pred HHHcCCChhh--------ccCCCCCHHHHHHHHHHHHcCCceeEEEEEECCCCCcCcccceEEEEEEEEEEECCCCCEEE
Confidence 9999998532 222444445556666677777788889999999997 89999999999999999999
Q ss_pred EEeeeec
Q 037299 849 AFCFLQI 855 (1111)
Q Consensus 849 ~v~~~~D 855 (1111)
++++.+|
T Consensus 221 ~v~i~~D 227 (227)
T 3ewk_A 221 YVQIQHD 227 (227)
T ss_dssp EEEEEEC
T ss_pred EEEEecC
Confidence 9999887
No 20
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=99.89 E-value=9e-22 Score=210.27 Aligned_cols=189 Identities=13% Similarity=0.110 Sum_probs=142.7
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHHhhc-cccccccCCcceeeEeec
Q 037299 874 CFARLKELAYICQEIKNPLSGVSFTNSLLEAT--DLTEDQKQLLETSAACEKQMLKIIKDV-DLESIEDGSLEFEKAEFL 950 (1111)
Q Consensus 874 ~~~r~~~La~isHEIrnPLt~I~~~~~LL~~~--~l~e~~~~~l~~i~~~~~~l~~lI~dL-dlsri~~g~~~l~~~~~~ 950 (1111)
...+.++.+.++|++++||++|.+.++++... ...+...+.+..+.+..+++...++++ ... .+.+
T Consensus 25 ~~er~~la~~l~~~l~~~L~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~r~~~~~~-----------~~~~ 93 (218)
T 3ehh_A 25 LEERQRMARDLVDTLGQKLSLMGLKSDLARKLIYKDPEQAARELKSVQQTARTSLNEVRKIVSSM-----------KGIR 93 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-----------CCCC
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------CCcC
Confidence 34566778899999999999999998888653 334456677777777777777777764 221 2456
Q ss_pred HHHHHHHHHHHHHHHhhccCcEEEeecCCcccceEEEecHHHHHHHHHHHHHHHhhcCCCCCceEEEEEEEccccCCCCc
Q 037299 951 LGSVINAVVSQVMMLLRERNLQLIRDIPEEIKTLAVYGDQARIQQVLADFLLNMVRYSPSAEGWVEIHVRPTLKQSSEGQ 1030 (1111)
Q Consensus 951 L~~vi~~v~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~D~~~L~qVl~nLl~NAik~t~~~~g~I~I~v~~~~~~~~~~~ 1030 (1111)
+.+.+..+...+ ...++.+.++.+...+. ....+...|.+|+.||+.||+||++. +.|.|++...++
T Consensus 94 l~~~l~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~l~~il~nll~Na~k~~~~--~~i~i~~~~~~~------ 160 (218)
T 3ehh_A 94 LKDELINIKQIL----EAADIMFIYEEEKWPEN-ISLLNENILSMCLKEAVTNVVKHSQA--KTCRVDIQQLWK------ 160 (218)
T ss_dssp HHHHHHHHHHHH----HHTTCEEECCCCCCCSC-CCHHHHHHHHHHHHHHHHHHHHHTCC--SEEEEEEEEETT------
T ss_pred HHHHHHHHHHHH----HhcCCEEEEeCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHhCCC--CEEEEEEEEeCC------
Confidence 777777666554 45788888887765432 34567888999999999999999975 789999887666
Q ss_pred eeEEEEEEEeeCCCCCChhhhhhccCCCCCCCCccchHHHHHHHHHHcCCEEEEEecCCceEEEEEEEee
Q 037299 1031 TIVHNEFRMVCPGEGLPPELVQDMFHSSRWMTQEGLGLSMCRKILKLMNGEVQYIRESERCYFLIIFELP 1100 (1111)
Q Consensus 1031 ~~~~v~i~V~DnG~GIp~e~~~~iFepf~~~~G~GLGL~i~r~iVe~~gG~I~v~s~~ggstF~~~L~LP 1100 (1111)
.+.|+|+|||+|||++.. +|+||||++|+++++.|||+|++.|.+ |++|+|+||++
T Consensus 161 ---~~~i~V~D~G~Gi~~~~~----------~g~GlGL~~~~~~v~~~gG~i~~~s~~-Gt~~~i~lP~~ 216 (218)
T 3ehh_A 161 ---EVVITVSDDGTFKGEENS----------FSKGHGLLGMRERLEFANGSLHIDTEN-GTKLTMAIPNN 216 (218)
T ss_dssp ---EEEEEEEESSCCCC------------------CHHHHHHHHHHHTTCEEEEECSS-SEEEEEEEEC-
T ss_pred ---EEEEEEEECCcCCCCCCC----------CCCCCCHHHHHHHHHHcCCEEEEeCCC-CeEEEEEEecC
Confidence 899999999999999854 789999999999999999999999999 88888877654
No 21
>2k2n_A Sensor protein, SYB-CPH1(GAF); phytochrome, GAF domain, phycocyanobilin, PCB, bacteriophytochrome, cyanobacterial phytochrome, kinase; HET: CYC; NMR {Synechococcus SP} SCOP: d.110.2.1 PDB: 2kli_A* 2koi_A*
Probab=99.88 E-value=1e-22 Score=209.36 Aligned_cols=142 Identities=34% Similarity=0.532 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHHHHhhCCCeEEEEeecCCCCcEEEEEecCC-CCCCccCCCCCCCCchHHHHHHHHhCCeeEeeccCCCc
Q 037299 235 IKLLCDTVVESVRQLTGYDRVMVYRFHEDEHGEVVAESKRP-DLEPYFGLHYPATDIPQASRFLFKQNRVRMIVDCHATP 313 (1111)
Q Consensus 235 ~~~l~~~~~~~vr~~~g~DRVmiY~F~~d~~G~VvaE~~~~-~~~~~lg~~~pa~dip~~ar~ly~~n~~r~i~d~~~~~ 313 (1111)
++++++++++++++++|+|||+||+|++|++|++++|+..+ .+++++|++||++|||.+++.+|.++++|+|+|++..+
T Consensus 1 l~~il~~~~~~~~~~l~~dr~~i~~~~~~~~~~~~~e~~~~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~i~d~~~~~ 80 (172)
T 2k2n_A 1 LDQILRATVEEVRAFLGTDRVKVYRFDPEGHGTVVAEARGGERLPSLLGLTFPAGDIPEEARRLFRLAQVRVIVDVEAQS 80 (172)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEEECCTTSCCEEEEEEESSTTSCCCTTCBCCTTCSCSHHHHHHHHTCCEECCCGGGCC
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEEEECCCCCEEEEEEEecCCCCccccCCccCcccCcHHHHHHHHhCCeEEEeeccccc
Confidence 46899999999999999999999999999999999999987 57999999999999999999999999999999999999
Q ss_pred ceeec--CCCCCCcccccCccccCCChhHHHHHHhcCcceEEEEEEEEcCCCccccC-CCCCccch
Q 037299 314 LCVIQ--DEGLMQPLCLVGSTLRAPHGCHAQYMANMGSIASLALAVIINGNDEEAVG-GRSTTRLW 376 (1111)
Q Consensus 314 ~~~~~--~~~~~~~ldls~~~lRsvsp~h~~yl~nmgv~asl~~~i~~~~~~~~~~~-~~~~~~LW 376 (1111)
+.++| ...+++|++++.+..++.+|||.+|++++|++|.|++||+.+|++||... .+...+-|
T Consensus 81 ~g~v~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~s~l~vPi~~~~~l~G~l~~~~~~~~~~ 146 (172)
T 2k2n_A 81 RSISQPESWGLSARVPLGEPLQRPVDPCHVHYLKSMGVASSLVVPLMHHQELWGLLVSHHAEPRPY 146 (172)
T ss_dssp CCCSCCCSCCCSSCCCCCSSSSCCCCHHHHHHHHTTTCSEEEECCCSCSSCCCEEEEEEECSCCCC
T ss_pred cccccccccccCCceeccchhhcCCCHHHHHHHHhcCCeEEEEEEEEECCEEEEEEEEEeCCCCCC
Confidence 88886 46789999999999999999999999999999999999999999998662 22356777
No 22
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=99.88 E-value=2.6e-22 Score=232.81 Aligned_cols=194 Identities=16% Similarity=0.175 Sum_probs=150.9
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhc-cccccccCCcceeeEeecHHH
Q 037299 875 FARLKELAYICQEIKNPLSGVSFTNSLLEATDLTEDQKQLLETSAACEKQMLKIIKDV-DLESIEDGSLEFEKAEFLLGS 953 (1111)
Q Consensus 875 ~~r~~~La~isHEIrnPLt~I~~~~~LL~~~~l~e~~~~~l~~i~~~~~~l~~lI~dL-dlsri~~g~~~l~~~~~~L~~ 953 (1111)
..|..++..++||+++|++.|.+..+.+.. +.+.+..+++.+++++| ++.. ....+++..
T Consensus 8 ~~k~d~l~~~~~el~~~~~~l~~~~~~~~~-----------~~i~~~~~~l~~l~~~l~~~~~--------~~~~~~~~~ 68 (379)
T 1b3q_A 8 IEKLDNLMDLMGELVIARSRILETLKKYNI-----------KELDESLSHLSRITLDLQNVVM--------KIRMVPISF 68 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSCCC-----------HHHHHHHHHHHHHHHHHHHHHH--------HHHEEETHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-----------HHHHHHHHHHHHHHHHHHHHHH--------HcceecHHH
Confidence 457788999999999999999876665432 45667778888888886 5542 234567788
Q ss_pred HHHHHHHHHHHHhhccCcEEEeecCCcccceEEEecHH---HHHHHHHHHHHHHhhcC------------CCCCceEEEE
Q 037299 954 VINAVVSQVMMLLRERNLQLIRDIPEEIKTLAVYGDQA---RIQQVLADFLLNMVRYS------------PSAEGWVEIH 1018 (1111)
Q Consensus 954 vi~~v~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~D~~---~L~qVl~nLl~NAik~t------------~~~~g~I~I~ 1018 (1111)
+++.+...++..+...+.++.+.+.... +..|+. ++.|+|.||+.||+||+ +. .|.|+|+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~v~l~~~~~~----~~~d~~~~~~l~~~l~nLl~NAi~h~~e~~~~r~~~gk~~-~g~I~i~ 143 (379)
T 1b3q_A 69 VFNRFPRMVRDLAKKMNKEVNFIMRGED----TELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPP-IGTLILS 143 (379)
T ss_dssp HHTTHHHHHHHHHHHTTCCEEEEEECTT----CEEEHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHTTCCS-SEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEEcCCC----eeecHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhcCCCC-CcEEEEE
Confidence 9999988888888776666666655432 456775 55666999999999997 33 6899999
Q ss_pred EEEccccCCCCceeEEEEEEEeeCCCCCChhhh------------------------hhccCCCCCC-------CCccch
Q 037299 1019 VRPTLKQSSEGQTIVHNEFRMVCPGEGLPPELV------------------------QDMFHSSRWM-------TQEGLG 1067 (1111)
Q Consensus 1019 v~~~~~~~~~~~~~~~v~i~V~DnG~GIp~e~~------------------------~~iFepf~~~-------~G~GLG 1067 (1111)
+...++ ++.|+|+|||+|||++.+ +++|+||+.+ +|+|+|
T Consensus 144 ~~~~~~---------~v~i~V~D~G~Gi~~~~~~~~a~~~gl~~~~~~~~~~~~~~~~~iF~p~fst~~~~~~~~G~GlG 214 (379)
T 1b3q_A 144 ARHEGN---------NVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAATLSDQEILNFLFVPGFSTKEKVSEVSGRGVG 214 (379)
T ss_dssp EEEETT---------EEEEEEEECSCCCCHHHHHHHHHHSSSCCSTTTTTSCTHHHHSGGGSTTCC-----------CCC
T ss_pred EEEeCC---------EEEEEEEECCCCCCHHHHHHHHHHcCCCChhhhhcCCHHHHHHHhcCCCCccCCccCCCCCcccc
Confidence 877666 899999999999999987 8899997533 489999
Q ss_pred HHHHHHHHHHcCCEEEEEecCC-ceEEEEEEEeeC
Q 037299 1068 LSMCRKILKLMNGEVQYIRESE-RCYFLIIFELPM 1101 (1111)
Q Consensus 1068 L~i~r~iVe~~gG~I~v~s~~g-gstF~~~L~LP~ 1101 (1111)
|++||++++.|||+|+++|.+| |++|+|+||+..
T Consensus 215 L~iv~~~v~~~gG~i~v~s~~g~Gt~f~i~lPl~~ 249 (379)
T 1b3q_A 215 MDVVKNVVESLNGSMGIESEKDKGTKVTIRLPLTL 249 (379)
T ss_dssp SHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESSC
T ss_pred HHHHHHHHHHCCCEEEEEEcCCCCeEEEeccCCcc
Confidence 9999999999999999999988 577777665543
No 23
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=99.87 E-value=3e-21 Score=193.55 Aligned_cols=145 Identities=26% Similarity=0.373 Sum_probs=126.2
Q ss_pred eeEeecHHHHHHHHHHHHHHHhhccCcEEEeecCCcccceEEEecHHHHHHHHHHHHHHHhhcCCCCCceEEEEEEEccc
Q 037299 945 EKAEFLLGSVINAVVSQVMMLLRERNLQLIRDIPEEIKTLAVYGDQARIQQVLADFLLNMVRYSPSAEGWVEIHVRPTLK 1024 (1111)
Q Consensus 945 ~~~~~~L~~vi~~v~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~D~~~L~qVl~nLl~NAik~t~~~~g~I~I~v~~~~~ 1024 (1111)
+.++++|.+++++++..+...+..+++++.+++++.. ..+.+|+..|.+||.||+.||+||++. ++.|.|++....+
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~i~~d~~~l~~il~nll~NAi~~~~~-~~~I~i~~~~~~~ 78 (152)
T 3a0y_A 2 EFTEFNLNELIREVYVLFEEKIRKMNIDFCFETDNED--LRVEADRTRIKQVLINLVQNAIEATGE-NGKIKITSEDMYT 78 (152)
T ss_dssp CCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESCSS--CEEEECHHHHHHHHHHHHHHHHHHHCT-TCEEEEEEEECSS
T ss_pred ccEEecHHHHHHHHHHHHHHHHHHcCcEEEEecCCCC--cEEEECHHHHHHHHHHHHHHHHHhcCC-CCEEEEEEEecCC
Confidence 5678999999999999999999999999999887543 368999999999999999999999976 6899998877655
Q ss_pred cCCCCceeEEEEEEEeeCCCCCChhhhhhccCCCCC--CCCccchHHHHHHHHH-HcCCEEEEEecCCceEEEEEEEeeC
Q 037299 1025 QSSEGQTIVHNEFRMVCPGEGLPPELVQDMFHSSRW--MTQEGLGLSMCRKILK-LMNGEVQYIRESERCYFLIIFELPM 1101 (1111)
Q Consensus 1025 ~~~~~~~~~~v~i~V~DnG~GIp~e~~~~iFepf~~--~~G~GLGL~i~r~iVe-~~gG~I~v~s~~ggstF~~~L~LP~ 1101 (1111)
.+.|+|+|+|+|||++.++++|+||+. ..|.||||++|+++++ .|||++.+.+.++|++|+|+| |.
T Consensus 79 ---------~~~i~i~D~G~g~~~~~~~~~f~~~~~~~~~g~GlGL~i~~~~~~~~~gg~~~~~~~~~g~~~~i~l--P~ 147 (152)
T 3a0y_A 79 ---------KVRVSVWNSGPPIPEELKEKIFSPFFTTKTQGTGLGLSICRKIIEDEHGGKIWTENRENGVVFIFEI--PK 147 (152)
T ss_dssp ---------EEEEEEEEESCCCCGGGTTGGGSTTCCCC--CCCCSHHHHHHHHHTTTSCEEEEEEETTEEEEEEEE--ES
T ss_pred ---------EEEEEEEeCCCCcCHHHHHhHhhhhccCCCCCCCcCHHHHHHHHHHhCCcEEEEecCCCCEEEEEEe--CC
Confidence 899999999999999999999999854 3489999999999999 999999999988776665555 65
Q ss_pred CC
Q 037299 1102 PR 1103 (1111)
Q Consensus 1102 ~~ 1103 (1111)
..
T Consensus 148 ~~ 149 (152)
T 3a0y_A 148 TP 149 (152)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 24
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=99.86 E-value=9.5e-21 Score=190.12 Aligned_cols=141 Identities=20% Similarity=0.320 Sum_probs=122.2
Q ss_pred EeecHHHHHHHHHHHHHHHhhccCcEEEeecCCcccceEEEecHHHHHHHHHHHHHHHhhcCCCCCceEEEEEEEccccC
Q 037299 947 AEFLLGSVINAVVSQVMMLLRERNLQLIRDIPEEIKTLAVYGDQARIQQVLADFLLNMVRYSPSAEGWVEIHVRPTLKQS 1026 (1111)
Q Consensus 947 ~~~~L~~vi~~v~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~D~~~L~qVl~nLl~NAik~t~~~~g~I~I~v~~~~~~~ 1026 (1111)
++++|.+++++++..+...+..+++++.++++++. .+.+|+..|.|||.||+.||+||++. .|.|++....+
T Consensus 2 e~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~d~~~l~~il~nLl~NAi~~~~~---~i~i~~~~~~~-- 73 (152)
T 1id0_A 2 ELHPVAPLLDNLTSALNKVYQRKGVNISLDISPEI---SFVGEQNDFVEVMGNVLDNACKYCLE---FVEISARQTDE-- 73 (152)
T ss_dssp CEEEHHHHHHHHHHHHHHHTTTTTCEEEEECCTTC---EEESCHHHHHHHHHHHHHHHHHHCSS---EEEEEEEECSS--
T ss_pred CcccHHHHHHHHHHHHHHHHHhCCcEEEEEcCCCc---eEeeCHHHHHHHHHHHHHHHHHhCcC---eEEEEEEecCC--
Confidence 57999999999999999999999999999987764 58999999999999999999999974 78887766555
Q ss_pred CCCceeEEEEEEEeeCCCCCChhhhhhccCCCCC----CCCccchHHHHHHHHHHcCCEEEEEecCC-ceEEEEEEEeeC
Q 037299 1027 SEGQTIVHNEFRMVCPGEGLPPELVQDMFHSSRW----MTQEGLGLSMCRKILKLMNGEVQYIRESE-RCYFLIIFELPM 1101 (1111)
Q Consensus 1027 ~~~~~~~~v~i~V~DnG~GIp~e~~~~iFepf~~----~~G~GLGL~i~r~iVe~~gG~I~v~s~~g-gstF~~~L~LP~ 1101 (1111)
.+.|+|.|+|+|||++.++++|+||+. ..|.||||++|+++++.|||+|++.+.++ |++|+|+ ||.
T Consensus 74 -------~~~i~i~D~G~gi~~~~~~~~f~~~~~~~~~~~g~GlGL~i~~~~~~~~gG~i~~~~~~~~G~~~~i~--lP~ 144 (152)
T 1id0_A 74 -------HLYIVVEDDGPGIPLSKREVIFDRGQRVDTLRPGQGVGLAVAREITEQYEGKIVAGESMLGGARMEVI--FGR 144 (152)
T ss_dssp -------CEEEEEEESSSCCCGGGTTGGGSCCCCTTCCCTTCCSCHHHHHHHHHHTTCEEEEEECTTSSEEEEEE--ECC
T ss_pred -------EEEEEEEeCCCCcCHHHHHHHhccceeccCCCCCcccCHHHHHHHHHHcCCEEEEEeCCCCcEEEEEE--Eec
Confidence 789999999999999999999999853 35899999999999999999999999875 5665555 465
Q ss_pred CCC
Q 037299 1102 PRR 1104 (1111)
Q Consensus 1102 ~~~ 1104 (1111)
...
T Consensus 145 ~~~ 147 (152)
T 1id0_A 145 QHS 147 (152)
T ss_dssp CC-
T ss_pred ccc
Confidence 443
No 25
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=99.86 E-value=6.3e-21 Score=191.16 Aligned_cols=138 Identities=13% Similarity=0.185 Sum_probs=113.3
Q ss_pred eeEeecHHHHHHHHHHHHHHHhhccCcEEEeecCCcccceEEEecHHHHHHHHHHHHHHHhhcCCCCCceEEEEEEEccc
Q 037299 945 EKAEFLLGSVINAVVSQVMMLLRERNLQLIRDIPEEIKTLAVYGDQARIQQVLADFLLNMVRYSPSAEGWVEIHVRPTLK 1024 (1111)
Q Consensus 945 ~~~~~~L~~vi~~v~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~D~~~L~qVl~nLl~NAik~t~~~~g~I~I~v~~~~~ 1024 (1111)
+.++++|.+++++++..+..... ++.+.++.+.. ..+.+|+..|.|+|.||+.||+||++. +.|.|++....+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~~~--~~~i~~~~~~~---~~~~~d~~~l~~il~nLl~NA~~~~~~--~~I~i~~~~~~~ 76 (150)
T 1ysr_A 4 DHVPVDITDLLDRAAHDAARIYP--DLDVSLVPSPT---CIIVGLPAGLRLAVDNAIANAVKHGGA--TLVQLSAVSSRA 76 (150)
T ss_dssp CCEEEEHHHHHHHHHHHHHHHST--TCEEEECSCCC---CEEEECHHHHHHHHHHHHHHHHHTTCC--SEEEEEEEEETT
T ss_pred cccccCHHHHHHHHHHHHHHhcc--CCceEEccCCC---ceEecCHHHHHHHHHHHHHHHHhcCCC--cEEEEEEEecCC
Confidence 56799999999999999887664 45666665543 368999999999999999999999987 588888877665
Q ss_pred cCCCCceeEEEEEEEeeCCCCCChhhhhhccCCCCC-----CCCccchHHHHHHHHHHcCCEEEEEecCC-ceEEEEEEE
Q 037299 1025 QSSEGQTIVHNEFRMVCPGEGLPPELVQDMFHSSRW-----MTQEGLGLSMCRKILKLMNGEVQYIRESE-RCYFLIIFE 1098 (1111)
Q Consensus 1025 ~~~~~~~~~~v~i~V~DnG~GIp~e~~~~iFepf~~-----~~G~GLGL~i~r~iVe~~gG~I~v~s~~g-gstF~~~L~ 1098 (1111)
.+.|+|.|+|+|||++.++++|+||+. ..|.||||++|+++++.|||+|++.+.++ |++|+|+||
T Consensus 77 ---------~~~i~v~D~G~gi~~~~~~~if~~f~~~~~~~~~g~GlGL~i~~~~~~~~gG~i~~~~~~~~G~~~~i~lP 147 (150)
T 1ysr_A 77 ---------GVEIAIDDNGSGVPEGERQVVFERFSRGSTASHSGSGLGLALVAQQAQLHGGTASLENSPLGGARLVLRLP 147 (150)
T ss_dssp ---------EEEEEEEESSSCCCGGGHHHHHTSCC-----------CCCHHHHHHHHHTTCEEEEEECTTSSEEEEEEEE
T ss_pred ---------EEEEEEEECCCCCCHHHHHHHhcccccCCCCCCCCCCcCHHHHHHHHHHcCCEEEEeecCCCCEEEEEEEe
Confidence 799999999999999999999999862 34889999999999999999999999876 566666554
No 26
>2lb5_A Sensor histidine kinase; PCB, transferase, GAF domain, phosphoprotein; HET: CYC; NMR {Synechococcus SP} PDB: 2lb9_A*
Probab=99.85 E-value=2e-21 Score=206.20 Aligned_cols=160 Identities=32% Similarity=0.494 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhCCCeEEEEeecCCCCcEEEEEecCC-CCCCccCCCCCCCCchHH
Q 037299 215 QSQKLAVRAISQLQSLPGGDIKLLCDTVVESVRQLTGYDRVMVYRFHEDEHGEVVAESKRP-DLEPYFGLHYPATDIPQA 293 (1111)
Q Consensus 215 ~~~~~~~~~i~~l~~~~~~~~~~l~~~~~~~vr~~~g~DRVmiY~F~~d~~G~VvaE~~~~-~~~~~lg~~~pa~dip~~ 293 (1111)
+..+++.+...+|.+ +.|++++++++++++++++|+|||+||.|++|++|++++|+..+ ++++++|.+||.+|||.+
T Consensus 13 ~~~~~L~~i~~~i~~--~~dl~~il~~~~~~l~~~l~~dr~~i~~~d~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~ 90 (208)
T 2lb5_A 13 SRDALINRITHQIRQ--SLELDQILRATVEEVRAFLGTDRVKVYRFDPEGHGTVVAEARGGERLPSLLGLTFPAGDIPEE 90 (208)
T ss_dssp --------------------CHHHHHHHHHHHHHHHCCSEEEEEECCTTSEEEEEEEEESSCCSCCCTTCEEEGGGCCSH
T ss_pred HHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHCCCEEEEEEEcCCCCEEEEEEEecCCCCccccCCcCChhhCcHH
Confidence 345566677778887 67999999999999999999999999999999999999999987 689999999999999999
Q ss_pred HHHHHHhCCeeEeeccCCCcceeec--CCCCCCcccccCccccCCChhHHHHHHhcCcceEEEEEEEEcCCCccccC-CC
Q 037299 294 SRFLFKQNRVRMIVDCHATPLCVIQ--DEGLMQPLCLVGSTLRAPHGCHAQYMANMGSIASLALAVIINGNDEEAVG-GR 370 (1111)
Q Consensus 294 ar~ly~~n~~r~i~d~~~~~~~~~~--~~~~~~~ldls~~~lRsvsp~h~~yl~nmgv~asl~~~i~~~~~~~~~~~-~~ 370 (1111)
++.+|.++++|+|+|+...++.++| ...+++|++++.+..++.+|||.+||+++|++|.|+|||+.+|++||... .+
T Consensus 91 ~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~l~~~~~~S~l~vPi~~~~~l~GvL~~~~ 170 (208)
T 2lb5_A 91 ARRLFRLAQVRVIVDVEAQSRSISQPESWGLSARVPLGEPLQRPVDPCHVHYLKSMGVASSLVVPLMHHQELWGLLVSHH 170 (208)
T ss_dssp HHHHHHHTCCCEECCGGGCCCCCCCSSCCCCCSCCCCCSCSSCCCCHHHHHHHHHTTCSEEEEEEEEETTEEEEEEEEEE
T ss_pred HHHHHHhCCeEEEeccccccccccccccccccccccccchhhccCCHHHHHHHHhcCCcEEEEEEEEECCEeEEEEEEee
Confidence 9999999999999999999988876 35788999999999999999999999999999999999999999998662 22
Q ss_pred CCccch
Q 037299 371 STTRLW 376 (1111)
Q Consensus 371 ~~~~LW 376 (1111)
...+-|
T Consensus 171 ~~~~~~ 176 (208)
T 2lb5_A 171 AEPRPY 176 (208)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 356777
No 27
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=99.84 E-value=2.2e-20 Score=189.62 Aligned_cols=145 Identities=19% Similarity=0.321 Sum_probs=117.6
Q ss_pred ceeeEeecHHHHHHHHHHHHHHHhhccCcEEEeecCCcccceEEEecHHHHHHHHHHHHHHHhhcCCCCCceEEEEEEEc
Q 037299 943 EFEKAEFLLGSVINAVVSQVMMLLRERNLQLIRDIPEEIKTLAVYGDQARIQQVLADFLLNMVRYSPSAEGWVEIHVRPT 1022 (1111)
Q Consensus 943 ~l~~~~~~L~~vi~~v~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~D~~~L~qVl~nLl~NAik~t~~~~g~I~I~v~~~ 1022 (1111)
++..++++|.+++++++..+. ..+..+.+++.... ..+.+|+..|.|||.||+.||+||+ ++.|.|++...
T Consensus 4 ~~~~~~~~l~~~~~~~~~~~~----~~~~~i~~~~~~~~--~~v~~d~~~l~~il~nll~NAik~~---~~~I~i~~~~~ 74 (161)
T 1bxd_A 4 EMPMEMADLNAVLGEVIAAES----GYEREIETALYPGS--IEVKMHPLSIKRAVANMVVNAARYG---NGWIKVSSGTE 74 (161)
T ss_dssp CCCSEEECHHHHHHHHHHHHC----SSSCCEEEECCSSC--CCEEECHHHHHHHHHHHHHHHHTTC---CSCEEEEEEEE
T ss_pred cccccccCHHHHHHHHHHHhh----hhcceEEEEecCCC--ceEEECHHHHHHHHHHHHHHHHhhc---CCeEEEEEEEc
Confidence 456789999999999998854 23445555544433 3689999999999999999999999 38899988776
Q ss_pred cccCCCCceeEEEEEEEeeCCCCCChhhhhhccCCCCCC------CCccchHHHHHHHHHHcCCEEEEEecCC-ceEEEE
Q 037299 1023 LKQSSEGQTIVHNEFRMVCPGEGLPPELVQDMFHSSRWM------TQEGLGLSMCRKILKLMNGEVQYIRESE-RCYFLI 1095 (1111)
Q Consensus 1023 ~~~~~~~~~~~~v~i~V~DnG~GIp~e~~~~iFepf~~~------~G~GLGL~i~r~iVe~~gG~I~v~s~~g-gstF~~ 1095 (1111)
.+ .+.|+|.|+|+|||++.++++|+||+.. .|.||||++|+++++.|||+|++.+.++ |++|+|
T Consensus 75 ~~---------~~~i~i~D~G~gi~~~~~~~~f~~f~~~~~~~~~~g~GlGL~i~~~~~~~~gG~i~~~~~~~~G~~~~i 145 (161)
T 1bxd_A 75 PN---------RAWFQVEDDGPGIAPEQRKHLFQPFVRGDSARTISGTGLGLAIVQRIVDNHNGMLELGTSERGGLSIRA 145 (161)
T ss_dssp TT---------EEEEEEEEESSCSCTTGGGCSSCCCCCCSCCCCCCCCSCCCCTTHHHHHHHTSEEEEEEETTTEEEEEE
T ss_pred CC---------EEEEEEEeCCCCCCHHHHHHhCCCceeCCCCCCCCCcccCHHHHHHHHHHcCCEEEEEECCCCeEEEEE
Confidence 55 8899999999999999999999998532 5889999999999999999999999865 566666
Q ss_pred EEEeeCCCCC
Q 037299 1096 IFELPMPRRG 1105 (1111)
Q Consensus 1096 ~L~LP~~~~~ 1105 (1111)
+||++.....
T Consensus 146 ~lP~~~~~~~ 155 (161)
T 1bxd_A 146 WLPVPVTRAQ 155 (161)
T ss_dssp EECCCSCCCC
T ss_pred EEeCCcccCC
Confidence 6655444433
No 28
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=99.84 E-value=1.3e-20 Score=190.59 Aligned_cols=154 Identities=21% Similarity=0.316 Sum_probs=108.7
Q ss_pred ceeeEeecHHHHHHHHHHHHHHHhhccCcEEEeecCCcccceEEEecHHHHHHHHHHHHHHHhhcCCCCCceEEEEEEEc
Q 037299 943 EFEKAEFLLGSVINAVVSQVMMLLRERNLQLIRDIPEEIKTLAVYGDQARIQQVLADFLLNMVRYSPSAEGWVEIHVRPT 1022 (1111)
Q Consensus 943 ~l~~~~~~L~~vi~~v~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~D~~~L~qVl~nLl~NAik~t~~~~g~I~I~v~~~ 1022 (1111)
+++..+++|.+++++++..+... ..+++++.+++++..+ .+.+|+..|.+|+.||+.||+||++..++.|.|++...
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~--~i~~d~~~l~~il~nLl~NAik~~~~~~~~I~i~~~~~ 78 (160)
T 1r62_A 2 PGTRVTESIHKVAERVVTLVSME-LPDNVRLIRDYDPSLP--ELAHDPDQIEQVLLNIVRNALQALGPEGGEIILRTRTA 78 (160)
T ss_dssp ---CEEECHHHHHHHHHHHHTTT-CCTTEEEEEECCTTCC--CEEECHHHHHHHHHHHHHHHHHHHGGGCEEEEEEEEEE
T ss_pred CCccccCCHHHHHHHHHHHHHhh-cccCcEEEEEcCCCCC--eeeeCHHHHHHHHHHHHHHHHHHhhccCCeEEEEEecc
Confidence 45678999999999999999887 7788999999888765 48999999999999999999999874348888887654
Q ss_pred cccC-CCCceeEEEEEEEeeCCCCCChhhhhhccCCCCC--CCCccchHHHHHHHHHHcCCEEEEEecCCceEEEEEEEe
Q 037299 1023 LKQS-SEGQTIVHNEFRMVCPGEGLPPELVQDMFHSSRW--MTQEGLGLSMCRKILKLMNGEVQYIRESERCYFLIIFEL 1099 (1111)
Q Consensus 1023 ~~~~-~~~~~~~~v~i~V~DnG~GIp~e~~~~iFepf~~--~~G~GLGL~i~r~iVe~~gG~I~v~s~~ggstF~~~L~L 1099 (1111)
.+.. ........+.|+|+|+|+|||++.++++|+||+. ..|+||||++|+++++.|||+|++++.+++++|+|+||+
T Consensus 79 ~~~~~~~~~~~~~~~i~v~D~G~gi~~~~~~~lf~~~~~~~~~g~GlGL~i~~~~~~~~gG~l~i~s~~~~~~~~i~lP~ 158 (160)
T 1r62_A 79 FQLTLHGERYRLAARIDVEDNGPGIPPHLQDTLFYPMVSGREGGTGLGLSIARNLIDQHSGKIEFTSWPGHTEFSVYLPI 158 (160)
T ss_dssp EEEEETTEEEEEEEEEEEEEECTTC--------------------CHHHHHHHHHHHHTTCEEEEEEETTEEEEEEEEEE
T ss_pred ccccccccccccEEEEEEEeCCCCCCHHHHHHhhCccccCCCCCCccCHHHHHHHHHHCCCeEEEEeCCCCEEEEEEEec
Confidence 3200 0011122789999999999999999999999853 358999999999999999999999999888655555543
No 29
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=99.83 E-value=4.4e-20 Score=190.58 Aligned_cols=145 Identities=21% Similarity=0.347 Sum_probs=120.3
Q ss_pred eecHHHHHHHHHHHHHHHhhccCcEEEeecCCcccceEEEecHHHHHHHHHHHHHHHhhcCCCCCceEEEEEEEccccCC
Q 037299 948 EFLLGSVINAVVSQVMMLLRERNLQLIRDIPEEIKTLAVYGDQARIQQVLADFLLNMVRYSPSAEGWVEIHVRPTLKQSS 1027 (1111)
Q Consensus 948 ~~~L~~vi~~v~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~D~~~L~qVl~nLl~NAik~t~~~~g~I~I~v~~~~~~~~ 1027 (1111)
+++|.++++.++..+... ..+++++.+++++.. ..+.+|+..|.+||.||+.||++|++. ++.|.|.+..... +
T Consensus 2 ~v~l~~~l~~~~~~~~~~-~~~~i~~~~~~~~~~--~~~~~d~~~l~~il~nLl~NAi~~~~~-~~~i~I~i~~~~~--~ 75 (177)
T 3sl2_A 2 WIQIVRFMSLIIDRFEMT-KEQHVEFIRNLPDRD--LYVEIDQDKITQVLDNIISNALKYSPE-GGHVTFSIDVNEE--E 75 (177)
T ss_dssp EEEHHHHHHHHHHHHHTS-SCC--CEEEECCSSC--CEEESCHHHHHHHHHHHHHHHHHTCCT-TCCEEEEEEEETT--T
T ss_pred eeeHHHHHHHHHHHHHHH-HhcCcEEEEecCCCC--cEEEeCHHHHHHHHHHHHHHHHHhCCC-CCeEEEEEEEccC--C
Confidence 689999999999999988 788899998887754 368999999999999999999999976 6788887754322 1
Q ss_pred CCceeEEEEEEEeeCCCCCChhhhhhccCCCCC--------CCCccchHHHHHHHHHHcCCEEEEEecCC-ceEEEEEEE
Q 037299 1028 EGQTIVHNEFRMVCPGEGLPPELVQDMFHSSRW--------MTQEGLGLSMCRKILKLMNGEVQYIRESE-RCYFLIIFE 1098 (1111)
Q Consensus 1028 ~~~~~~~v~i~V~DnG~GIp~e~~~~iFepf~~--------~~G~GLGL~i~r~iVe~~gG~I~v~s~~g-gstF~~~L~ 1098 (1111)
+ .+.|+|.|||+|||++.++++|++|+. .+|.||||++|+++++.|||+|++.+.++ |++|+|+||
T Consensus 76 ~-----~~~i~V~D~G~gi~~~~~~~lf~~~~~~~~~~~~~~~g~GlGL~iv~~~~~~~~G~i~i~~~~~~Gt~~~i~lP 150 (177)
T 3sl2_A 76 E-----LLYISVKDEGIGIPKKDVEKVFDRFYRVDKARTRKLGGTGLGLAIAKEMVQAHGGDIWADSIEGKGTTITFTLP 150 (177)
T ss_dssp T-----EEEEEEECCSSCCCTTTTTTTTSTTCCCC------CCCCCCHHHHHHHHHHHTTCCEEEEEETTTEEEEEEEEE
T ss_pred C-----EEEEEEEECCCCCCHHHHHHHHhhhccCCCCCCCCCCCCCcCHHHHHHHHHHcCCEEEEEecCCCCeEEEEEEe
Confidence 1 789999999999999999999999852 23889999999999999999999999877 577777776
Q ss_pred eeCCC
Q 037299 1099 LPMPR 1103 (1111)
Q Consensus 1099 LP~~~ 1103 (1111)
+....
T Consensus 151 ~~~~~ 155 (177)
T 3sl2_A 151 YKEEQ 155 (177)
T ss_dssp EEC--
T ss_pred CCCCc
Confidence 65543
No 30
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=99.80 E-value=2.8e-19 Score=186.62 Aligned_cols=143 Identities=17% Similarity=0.166 Sum_probs=115.7
Q ss_pred eEeecHHHHHHHHHHHHHHHhhccCcEEEeecCCcccceEEEecHHHHHHHHHHHHHHHhhcC------------CCCCc
Q 037299 946 KAEFLLGSVINAVVSQVMMLLRERNLQLIRDIPEEIKTLAVYGDQARIQQVLADFLLNMVRYS------------PSAEG 1013 (1111)
Q Consensus 946 ~~~~~L~~vi~~v~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~D~~~L~qVl~nLl~NAik~t------------~~~~g 1013 (1111)
.++++|.++++.+...+...+..+++.+.++++.... .....+..++.|+|.||+.||+||+ +. ++
T Consensus 2 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~l~~il~nLl~NAik~~~~~~~~~~~~~~~~-~~ 79 (189)
T 1i58_A 2 SHMVPISFVFNRFPRMVRDLAKKMNKEVNFIMRGEDT-ELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKPP-IG 79 (189)
T ss_dssp CSEEETHHHHTTHHHHHHHHHHHTTCCEEEEEECTTC-EEEHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHTSCS-SE
T ss_pred CeEecHHHHHHHHHHHHHHHHHHhCCcEEEEEcCCcc-cccHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCC-CC
Confidence 3578999999999999999999888888777665422 1222334567777999999999997 33 68
Q ss_pred eEEEEEEEccccCCCCceeEEEEEEEeeCCCCCChhhh------------------------hhccCCCCCC-------C
Q 037299 1014 WVEIHVRPTLKQSSEGQTIVHNEFRMVCPGEGLPPELV------------------------QDMFHSSRWM-------T 1062 (1111)
Q Consensus 1014 ~I~I~v~~~~~~~~~~~~~~~v~i~V~DnG~GIp~e~~------------------------~~iFepf~~~-------~ 1062 (1111)
.|.|++....+ .+.|+|+|||+|||++.+ +++|+||+.+ .
T Consensus 80 ~I~I~~~~~~~---------~~~i~V~D~G~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~~~~~~ 150 (189)
T 1i58_A 80 TLILSARHEGN---------NVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAATLSDQEILNFLFVPGFSTKEKVSEVS 150 (189)
T ss_dssp EEEEEEEEETT---------EEEEEEEECSSCCCHHHHHHHHHHTTSSCHHHHTTCCHHHHHGGGGSTTCSHHHHHHGGG
T ss_pred eEEEEEEecCC---------EEEEEEEeCCCCcCHHHHhhhhhhccchhhhhhcccchhhhHHHhcCCcccccccCCCCC
Confidence 99999877665 899999999999999976 9999998533 5
Q ss_pred CccchHHHHHHHHHHcCCEEEEEecCC-ceEEEEEEEe
Q 037299 1063 QEGLGLSMCRKILKLMNGEVQYIRESE-RCYFLIIFEL 1099 (1111)
Q Consensus 1063 G~GLGL~i~r~iVe~~gG~I~v~s~~g-gstF~~~L~L 1099 (1111)
|.||||++|+++++.|||+|++.+.++ |++|+|+||+
T Consensus 151 g~GlGL~iv~~~~~~~~G~i~i~s~~~~Gt~~~i~lPl 188 (189)
T 1i58_A 151 GRGVGMDVVKNVVESLNGSISIESEKDKGTKVTIRLPL 188 (189)
T ss_dssp TCCCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEEC
T ss_pred CCccCHHHHHHHHHHcCCEEEEEeCCCCceEEEEEEeC
Confidence 899999999999999999999999877 4666555543
No 31
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=99.77 E-value=2.8e-18 Score=167.18 Aligned_cols=124 Identities=15% Similarity=0.125 Sum_probs=100.1
Q ss_pred cHHHHHHHHHHHHHHHhhccCcEEEeecCCcccceEEEecHHHHHHHHHHHHHHHhhcCCCCCceEEEEEEEccccCCCC
Q 037299 950 LLGSVINAVVSQVMMLLRERNLQLIRDIPEEIKTLAVYGDQARIQQVLADFLLNMVRYSPSAEGWVEIHVRPTLKQSSEG 1029 (1111)
Q Consensus 950 ~L~~vi~~v~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~D~~~L~qVl~nLl~NAik~t~~~~g~I~I~v~~~~~~~~~~ 1029 (1111)
+|.+.+..+. ..++.+++++.++.+.+.+. ....++..|.+++.||+.||+||++. +.|.|++....+
T Consensus 3 ~l~~~l~~~~----~~~~~~~i~~~~~~~~~~~~-~~~~~~~~l~~il~nll~Na~k~~~~--~~i~i~~~~~~~----- 70 (128)
T 3ehg_A 3 RLKDELINIK----QILEAADIMFIYEEEKWPEN-ISLLNENILSMCLKEAVTNVVKHSQA--KTCRVDIQQLWK----- 70 (128)
T ss_dssp CHHHHHHHHH----HHHHHTTCEEECCCCSCCSC-CCHHHHHHHHHHHHHHHHHHHHHTCC--SEEEEEEEEETT-----
T ss_pred cHHHHHHHHH----HHHHHcCCEEEEEcCccccc-cCHHHHHHHHHHHHHHHHHHHhcCCC--cEEEEEEEEeCC-----
Confidence 4555555444 44556788888887764432 34567899999999999999999975 789998877666
Q ss_pred ceeEEEEEEEeeCCCCCChhhhhhccCCCCCCCCccchHHHHHHHHHHcCCEEEEEecCCceEEEEEEEee
Q 037299 1030 QTIVHNEFRMVCPGEGLPPELVQDMFHSSRWMTQEGLGLSMCRKILKLMNGEVQYIRESERCYFLIIFELP 1100 (1111)
Q Consensus 1030 ~~~~~v~i~V~DnG~GIp~e~~~~iFepf~~~~G~GLGL~i~r~iVe~~gG~I~v~s~~ggstF~~~L~LP 1100 (1111)
.+.|+|+|||+|||++.. .|+|+||++||++++.|||+|++.|.+ |++|+++||++
T Consensus 71 ----~~~i~V~D~G~Gi~~~~~----------~g~GlGL~~~~~~~~~~gG~i~~~s~~-Gt~~~i~lP~~ 126 (128)
T 3ehg_A 71 ----EVVITVSDDGTFKGEENS----------FSKGHGLLGMRERLEFANGSLHIDTEN-GTKLTMAIPNN 126 (128)
T ss_dssp ----EEEEEEEESSCCCSCSSC----------CCTTSHHHHHHHHHHHTTCEEEEECSS-SEEEEEEEEC-
T ss_pred ----EEEEEEEECCcCcCcccC----------CCCCccHHHHHHHHHHcCCEEEEEeCC-CEEEEEEEecC
Confidence 899999999999998753 689999999999999999999999999 88877777654
No 32
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.76 E-value=6.6e-18 Score=194.60 Aligned_cols=239 Identities=9% Similarity=-0.009 Sum_probs=177.0
Q ss_pred HHHHHHHhcCCcEEEEcCCccEEeecHHHHHHcCCChhhhcCCcccccccchhhHHHHHHHHHHHHcCCCcc--------
Q 037299 604 EMVRLIETATAPIFAVDVHGCVNGWNAKVAELTGLSVEEAMGKSLVHDLVYKEYEEIVDNLLHHALKGEEDK-------- 675 (1111)
Q Consensus 604 ~l~~lie~~~~~I~~~D~dG~I~~~N~a~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~-------- 675 (1111)
....++++++..++++|.+|+|+|+|+++.+++||+++|++|+++. +++||++.+.+...+..........
T Consensus 87 ~~~~~l~a~~~~i~v~~~~G~i~yvs~~~~~~lGy~~~el~g~~~~-~~ihp~D~~~~~~~l~~~~~~~~~~~~~~~~~~ 165 (361)
T 4f3l_A 87 FTQLMLEALDGFFLAIMTDGSIIYVSESVTSLLEHLPSDLVDQSIF-NFIPEGEHSEVYKILSTHLLESDSLTPEYLKSK 165 (361)
T ss_dssp HHHHHHHHTTEEEEEEETTSBEEEECTTHHHHHCCCHHHHTTSBGG-GGSCGGGHHHHHHHHHHCCCCCCSSSCGGGCGG
T ss_pred HHHHHHHhcCceEEEEcCCccEEEEechhhhhcCCCHHHhcCCcHH-HhcCHHHHHHHHHHhccCCCCCCCCCccccccc
Confidence 4556889999999999999999999999999999999999999999 9999999999888877644322111
Q ss_pred ---ceEEEEEEeccc--cCCcEEEEEEEeEeec---------------------cCCCCEEEEEEEEEechhHHHHHHHH
Q 037299 676 ---NVEIKLRTFGAE--NRKKAVFVVVNACSSK---------------------DYTNNIVGVCFVGQDVTDQKLVMDKF 729 (1111)
Q Consensus 676 ---~~e~~l~~~~~~--~dG~~~~v~v~~~pi~---------------------d~~G~v~gvv~v~~DITerK~ae~~L 729 (1111)
.+.+++...... ......++...+.... ...+...++++++++++.+...+...
T Consensus 166 ~~~~f~cr~~~~~~~~~~~~~y~~i~~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~lvai~r~~~~~~~~e~~~ 245 (361)
T 4f3l_A 166 NQLEFCCHMLRGTIDPKEPSTYEYVRFIGNFKSLTSVSTSTHNGFEGTIQRTHRPSYEDRVCFVATVRLATPQFIKEMCT 245 (361)
T ss_dssp GEEEEEEEEECCCSCSSSCCCEEEEEEEEEEEECC------------------------CEEEEEEEEESSCCSSEEECS
T ss_pred CceeEEEEEeccCCCCCCCCceEEEEEEEEEEeccCCCcccccCcccccccccCccCCCceEEEEEEecCCCCccccccc
Confidence 111222211111 1233444443332221 11233456777788877654322110
Q ss_pred HhHHHHHHHHHhCCCCCCCCccccCCCCccccchhhhHHHhCCCccccccccccccccccccccCChhhHHHHHHHHHhh
Q 037299 730 IHIQGDYKAIVHSPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGDIIGKMLVGEVFGSCCRLKGPDALTKFMIALHNA 809 (1111)
Q Consensus 730 ~~se~~l~~i~~~~~~l~~~I~v~D~~g~ii~~N~a~~~l~G~~~eeliGk~l~~~v~~~~~~l~~~~~~~~~~~~l~~~ 809 (1111)
++.. ....++..|.+|+++++|+++..++||+++|++|++. ..+.||+|...+...+...
T Consensus 246 ----------i~~~--~~~f~~~~~~dg~~~~vn~~~~~ilGY~~eEl~g~~~--------~~~iHpdD~~~~~~~~~~~ 305 (361)
T 4f3l_A 246 ----------VEEP--NEEFTSRHSLEWKFLFLDHRAPPIIGYLPFEVLGTSG--------YDYYHVDDLENLAKCHEHL 305 (361)
T ss_dssp ----------CSSS--CCEEEEEECTTSBEEEECTTSHHHHCCCHHHHTTSBG--------GGGBCHHHHHHHHHHHHHH
T ss_pred ----------ccCC--cceeEEEEcCCceEEEECChhhhhhCcCHHHHcCCCH--------HHeECHHHHHHHHHHHHHH
Confidence 0111 1124777899999999999999999999999999864 5677899999998888888
Q ss_pred hCCCCcceeeeeeecCCCCEEEEEEEEeeeecC-CCCEEEEEeeeecccHHHHHH
Q 037299 810 FGGQDTEKFPFPLFDRNGKYVQALLTANKRVNM-EGQIVGAFCFLQIASPELQQA 863 (1111)
Q Consensus 810 ~~~~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~-~G~v~g~v~~~~DITer~~~e 863 (1111)
+..+.....++++++++|.++|+..++.+++|. +|++.+++++.+|||++..++
T Consensus 306 l~~g~~~~~eyR~~~kdG~~vWv~~~~~~v~~~~~g~~~~iv~~~~dITe~~~~~ 360 (361)
T 4f3l_A 306 MQYGKGKSCYYRFLTKGQQWIWLQTHYYITYHQWNSRPEFIVCTHTVVSYAEVRA 360 (361)
T ss_dssp HHHSEEECCCEEEECTTSEEEEEEEEEEEEECTTTCCEEEEEEEEEECCHHHHHH
T ss_pred HhCCCcceEEEEEEecCCCEEEEEEEEEEEEcCCCCCeeEEEEEEEECChhHhhc
Confidence 877777788999999999999999999999998 899999999999999976554
No 33
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.73 E-value=1.7e-17 Score=192.66 Aligned_cols=235 Identities=9% Similarity=0.047 Sum_probs=168.9
Q ss_pred HHHHHHhcCCcEEEEcCC-ccEEeecHHHHHHcCCChhhhcCCcccccccchhhHHHHHHHHHHHH----------cCC-
Q 037299 605 MVRLIETATAPIFAVDVH-GCVNGWNAKVAELTGLSVEEAMGKSLVHDLVYKEYEEIVDNLLHHAL----------KGE- 672 (1111)
Q Consensus 605 l~~lie~~~~~I~~~D~d-G~I~~~N~a~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l----------~~~- 672 (1111)
...++++++..+++++.+ |+|+|+|++++.++||+++|++|+++. +++||+|.+.+...+.... .++
T Consensus 88 ~~~ll~~~~gfi~v~~~~~G~i~yvs~~~~~~lG~~~~el~g~~~~-~~ihp~D~~~~~~~L~~~~~~p~~~~~~~~tg~ 166 (387)
T 4f3l_B 88 KHLILRAADGFLFVVGCDRGKILFVSESVFKILNYSQNDLIGQSLF-DYLHPKDIAKVKEQLSSSDTAPRERLIDAKTGL 166 (387)
T ss_dssp HHHHHHTCCSEEEEEETTTCBEEEECTTHHHHHSCCHHHHTTSBGG-GGBCGGGHHHHHHHHSCC---------------
T ss_pred HHHHHhcCCCEEEEEecCCeEEEEEchhhHHHcCCCHHHHCCCcHH-HhcCCCCHHHHHHHhcccccCccccccCcccCC
Confidence 456789999999999987 999999999999999999999999999 9999999998887664221 011
Q ss_pred ----------------CccceEEEEEEeccc-----------------cCCcEEEEEEEeEeecc---------------
Q 037299 673 ----------------EDKNVEIKLRTFGAE-----------------NRKKAVFVVVNACSSKD--------------- 704 (1111)
Q Consensus 673 ----------------~~~~~e~~l~~~~~~-----------------~dG~~~~v~v~~~pi~d--------------- 704 (1111)
....+.++++..... +..++.++.+++.....
T Consensus 167 ~~~~e~~~~~~~~~~g~~rsF~cRmr~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~G~l~~~~~~~~~~~~~~~~~~ 246 (387)
T 4f3l_B 167 PVKTDITPGPSRLCSGARRSFFCRMKCNRPSVKVEDKDFASTCSKKKADRKSFCTIHSTGYLKSWPPTKMGLDEDNEPDN 246 (387)
T ss_dssp -----------CCCGGGEEEEEEEEECSCC-------------------CCSEEEEEEEEEEEC----------------
T ss_pred ccCCCCCCcccccccCCceeEEEeeecccCCcccccccccccccccccCCCceEEEEEEEEEeccccccccccccccccc
Confidence 111223333321100 23445555555433221
Q ss_pred CCCCEEEEEEEEEechhHHHH--HHHHHhHHHHHHHHHhCCCCCCCCccccCCCCccccchhhhHHHhCCCccccccccc
Q 037299 705 YTNNIVGVCFVGQDVTDQKLV--MDKFIHIQGDYKAIVHSPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGDIIGKML 782 (1111)
Q Consensus 705 ~~G~v~gvv~v~~DITerK~a--e~~L~~se~~l~~i~~~~~~l~~~I~v~D~~g~ii~~N~a~~~l~G~~~eeliGk~l 782 (1111)
..+...++++++++++..... ..+ +..... ..++..|.+|+++++|+++..++||+++|++|+..
T Consensus 247 ~~~~~~~lvai~r~~~~~~~~~~~~e----------i~~~~~---~fi~~~~~dg~~~~vn~~~~~ilGY~~eEl~g~~~ 313 (387)
T 4f3l_B 247 EGCNLSCLVAIGRLHSHMVPQPANGE----------IRVKSM---EYVSRHAIDGKFVFVDQRATAILAYLPQELLGTSC 313 (387)
T ss_dssp ---CCCEEEEEEEECCCSCCSCCCSS----------SCBCCC---EEEEEECTTSBEEEECTHHHHHHCCCHHHHTTSBG
T ss_pred CCCcceEEEEEEecccCCCCCCcccc----------cccCCc---eEEEEECCCCEEEEECCCcccccCCCHHHHcCCcH
Confidence 112234677777886532110 000 111122 24777899999999999999999999999999864
Q ss_pred cccccccccccCChhhHHHHHHHHHhhhCCCC-cceeeeeeecCCCCEEEEEEEEeeeecC-CCCEEEEEeeeecccHHH
Q 037299 783 VGEVFGSCCRLKGPDALTKFMIALHNAFGGQD-TEKFPFPLFDRNGKYVQALLTANKRVNM-EGQIVGAFCFLQIASPEL 860 (1111)
Q Consensus 783 ~~~v~~~~~~l~~~~~~~~~~~~l~~~~~~~~-~~~~e~~~~~~dG~~~~v~~~~~pi~d~-~G~v~g~v~~~~DITer~ 860 (1111)
..+.||+|...+...+...+.++. ....+++++++||.++|+..++.++.|. +|++.+++++.+|||+|+
T Consensus 314 --------~~~iHpdD~~~~~~~~~~~l~~~~~~~~~eyR~~~kdG~~vWv~~~~~~~~~~~~g~~~~ivg~~~dIT~Rk 385 (387)
T 4f3l_B 314 --------YEYFHQDDIGHLAECHRQVLQTREKITTNCYKFKIKDGSFITLRSRWFSFMNPWTKEVEYIVSTNTVVLANV 385 (387)
T ss_dssp --------GGTBCHHHHHHHHHHHHHHTTCSSCEECCCEEEECTTSCEEEEEEEEEEEEETTTTEEEEEEEEEEECC---
T ss_pred --------HHeeCHHHHHHHHHHHHHHHhcCCCeeeEEEEEEccCCCEEEEEEEEEEEECCCCCCEEEEEEEEEEcchhh
Confidence 567789999999999998886554 4678999999999999999999999998 899999999999999986
Q ss_pred H
Q 037299 861 Q 861 (1111)
Q Consensus 861 ~ 861 (1111)
+
T Consensus 386 ~ 386 (387)
T 4f3l_B 386 L 386 (387)
T ss_dssp -
T ss_pred c
Confidence 4
No 34
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=99.70 E-value=1.1e-16 Score=158.12 Aligned_cols=138 Identities=13% Similarity=0.085 Sum_probs=118.6
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEcCCccEEeecHHHHHHcCCChhhhcCC--cccccccchhhHHHHHHHHHHHHcCCC
Q 037299 596 DELSSVAREMVRLIETATAPIFAVDVHGCVNGWNAKVAELTGLSVEEAMGK--SLVHDLVYKEYEEIVDNLLHHALKGEE 673 (1111)
Q Consensus 596 ~eL~~~~~~l~~lie~~~~~I~~~D~dG~I~~~N~a~~~l~G~~~eeliG~--~~~~~l~~~~~~~~~~~~l~~~l~~~~ 673 (1111)
++|++++++|+.+++++++++|.+|.++.+++||+++.+++||+++++.+. .+. .++||++.+.+...+..++.++.
T Consensus 2 ~aL~~se~rl~~~~~~~~~g~w~~d~~~~~~~~s~~~~~~~G~~~~~~~~~~~~~~-~~ihpdD~~~~~~~~~~~~~~~~ 80 (142)
T 3mr0_A 2 NALSASEERFQLAVSGASAGLWDWNPKTGAMYLSPHFKKIMGYEDHELPDEITGHR-ESIHPDDRARVLAALKAHLEHRD 80 (142)
T ss_dssp -------CCHHHHHHHTTCEEEEECTTTCCEEECHHHHHHTTCCGGGSCSEEC----CCBCTTTHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHhCCcEEEEEEcCCCeEEECHHHHHHhCCCccccCCCHHHHH-hhcCHHHHHHHHHHHHHHHhCCC
Confidence 357778889999999999999999999999999999999999999998764 344 78999999999999999888777
Q ss_pred ccceEEEEEEeccccCCcEEEEEEEeEeeccCCCCEEEEEEEEEechhHHHHHHHHHhHHHHHHH
Q 037299 674 DKNVEIKLRTFGAENRKKAVFVVVNACSSKDYTNNIVGVCFVGQDVTDQKLVMDKFIHIQGDYKA 738 (1111)
Q Consensus 674 ~~~~e~~l~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DITerK~ae~~L~~se~~l~~ 738 (1111)
....++++. +++|..+|+...+.|++|.+|.+.+++++++|||++|++|++|++++++|+.
T Consensus 81 ~~~~e~r~~----~~~G~~~w~~~~~~~~~d~~g~~~~~~G~~~DITerk~~E~~L~~~~~~l~~ 141 (142)
T 3mr0_A 81 TYDVEYRVR----TRSGDFRWIQSRGQALWNSAGEPYRMVGWIMDVTDRKRDEDALRVSREELRR 141 (142)
T ss_dssp CEEEEEEEE----CTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECHHHHHHHHHHHHHHHHHHT
T ss_pred ceEEEEEEE----CCCCCEEEEEEEEEEEECCCCCEEEEEEEEEcCchHHHHHHHHHHHHHHHhc
Confidence 666666665 7899999999999999999999999999999999999999999999999875
No 35
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=99.69 E-value=1.5e-16 Score=154.77 Aligned_cols=124 Identities=18% Similarity=0.180 Sum_probs=97.3
Q ss_pred eEeecHHHHHHHHHHHHHHHhhccCcEEEeecCCcccceEEEecHHHHHHHHHHHHHHHhhcCCCCCceEEEEEEEcccc
Q 037299 946 KAEFLLGSVINAVVSQVMMLLRERNLQLIRDIPEEIKTLAVYGDQARIQQVLADFLLNMVRYSPSAEGWVEIHVRPTLKQ 1025 (1111)
Q Consensus 946 ~~~~~L~~vi~~v~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~D~~~L~qVl~nLl~NAik~t~~~~g~I~I~v~~~~~~ 1025 (1111)
..+++|.++++.++..+ ..+++.+.++++...+. ....|+..|.+|+.||+.||+||++. +.|.|++... +
T Consensus 2 ~~~~~l~~~l~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~l~~il~nll~NA~k~~~~--~~i~i~~~~~-~- 72 (129)
T 3zxo_A 2 AMVTRLRQRIDAAVAQF----ADSGLRTSVQFVGPLSV-VDSALADQAEAVVREAVSNAVRHAAA--STLTVRVKVD-D- 72 (129)
T ss_dssp ---CCHHHHHHHHHHHH----SCTTSEEEEEEESCGGG-SCHHHHHHHHHHHHHHHHHCCCCSSC--CEEEEEEEES-S-
T ss_pred CccccHHHHHHHHHHHH----hhcCceEEEEecCCccc-CCHHHHHHHHHHHHHHHHHHHHhCCC--ceEEEEEEEc-C-
Confidence 35678999999988877 45667777766665442 34455889999999999999999965 8888887653 2
Q ss_pred CCCCceeEEEEEEEeeCCCCCChhhhhhccCCCCCCCCccchHHHHHHHHHHcCCEEEEEecCC--ceEEEEEEEe
Q 037299 1026 SSEGQTIVHNEFRMVCPGEGLPPELVQDMFHSSRWMTQEGLGLSMCRKILKLMNGEVQYIRESE--RCYFLIIFEL 1099 (1111)
Q Consensus 1026 ~~~~~~~~~v~i~V~DnG~GIp~e~~~~iFepf~~~~G~GLGL~i~r~iVe~~gG~I~v~s~~g--gstF~~~L~L 1099 (1111)
. +.|+|+|+|+|||++. +||||++||++++.|||++.+.+.++ |++|+++||+
T Consensus 73 -------~-~~i~v~D~G~gi~~~~-------------~GlGL~i~~~~~~~~gG~i~~~~~~~~~G~~~~i~lP~ 127 (129)
T 3zxo_A 73 -------D-LCIEVTDNGRGMPDEF-------------TGSGLTNLRQRAEQAGGEFTLASMPGASGTVLRWSAPL 127 (129)
T ss_dssp -------E-EEEEEEECCCCCTTTT-------------CSHHHHHHHHHHHHTTCEEEEEECTTTCCEEEEEEEES
T ss_pred -------C-EEEEEecCCCCCCccc-------------CCcCHHHHHHHHHHcCCEEEEeeCCCCCcEEEEEEecC
Confidence 2 7899999999999874 69999999999999999999999987 5665555543
No 36
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=99.65 E-value=1.6e-15 Score=146.50 Aligned_cols=121 Identities=17% Similarity=0.111 Sum_probs=93.7
Q ss_pred cHHHHHHHHHHHHHHHhhccCcEEEeecCCcccceEEEecHHHHHHHHHHHHHHHhhcCCCCCceEEEEEEEccccCCCC
Q 037299 950 LLGSVINAVVSQVMMLLRERNLQLIRDIPEEIKTLAVYGDQARIQQVLADFLLNMVRYSPSAEGWVEIHVRPTLKQSSEG 1029 (1111)
Q Consensus 950 ~L~~vi~~v~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~D~~~L~qVl~nLl~NAik~t~~~~g~I~I~v~~~~~~~~~~ 1029 (1111)
+|.+.+.+++..+ ...++.+.++++.+.+. ....++..|.+++.||+.||+||++. +.|.|++... +
T Consensus 2 ~l~~~l~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~l~~il~nll~Na~k~~~~--~~i~i~~~~~-~----- 68 (124)
T 3zxq_A 2 GLRHRLDKVIDQL----AIPALHTTVQYTGPLSV-VDTVLANHAEAVLREAVSNAVRHANA--TSLAINVSVE-D----- 68 (124)
T ss_dssp CHHHHHHHHHHHH----TTTTSEEEEEEESCGGG-CCHHHHHHHHHHHHHHHHHHHTCTTC--CEEEEEEEEE-E-----
T ss_pred cHHHHHHHHHHHH----HhcCceEEEEeeCcccc-ccHHHHHHHHHHHHHHHHHHHHhCCC--CEEEEEEEeC-C-----
Confidence 4666777777666 45666666666554432 23345889999999999999999986 7888887542 1
Q ss_pred ceeEEEEEEEeeCCCCCChhhhhhccCCCCCCCCccchHHHHHHHHHHcCCEEEEEecCC-ceEEEEEEEee
Q 037299 1030 QTIVHNEFRMVCPGEGLPPELVQDMFHSSRWMTQEGLGLSMCRKILKLMNGEVQYIRESE-RCYFLIIFELP 1100 (1111)
Q Consensus 1030 ~~~~~v~i~V~DnG~GIp~e~~~~iFepf~~~~G~GLGL~i~r~iVe~~gG~I~v~s~~g-gstF~~~L~LP 1100 (1111)
. +.|+|+|||+|||++. .|+||++|+++++.|||++++.+.++ |++|+++||++
T Consensus 69 ---~-~~i~v~D~G~gi~~~~-------------~GlGL~~~~~~~~~~gG~i~~~~~~~~G~~~~i~lP~~ 123 (124)
T 3zxq_A 69 ---D-VRVEVVDDGVGISGDI-------------TESGLRNLRQRADDAGGEFTVENMPTGGTLLRWSAPLR 123 (124)
T ss_dssp ---E-EEEEEEECCCSSCGGG-------------SHHHHHHHHHHHHHHTCEEEEEECTTSSEEEEEEEECC
T ss_pred ---C-EEEEEEECCCCCCccc-------------cccCHHHHHHHHHHhCCEEEEEEcCCCcEEEEEEEecC
Confidence 3 7899999999999875 39999999999999999999999887 67766666554
No 37
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=99.60 E-value=6.6e-15 Score=143.00 Aligned_cols=127 Identities=17% Similarity=0.106 Sum_probs=100.5
Q ss_pred HHHHHhcCCcEEEEcCCc---cEEeecHHHHHHcCCChhhhcCCcccccccchhhHHHHHHHHHHHHcCCCccceEEEEE
Q 037299 606 VRLIETATAPIFAVDVHG---CVNGWNAKVAELTGLSVEEAMGKSLVHDLVYKEYEEIVDNLLHHALKGEEDKNVEIKLR 682 (1111)
Q Consensus 606 ~~lie~~~~~I~~~D~dG---~I~~~N~a~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~l~ 682 (1111)
+.++++++++|+++|.+| +|+++|+++++++||+.+|++|+++. .+.+++........+...+..+.....++..
T Consensus 2 ~~~~~~~~~~i~~~d~~g~~~~i~~~N~a~~~~~G~~~~el~g~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~- 79 (132)
T 2pr5_A 2 SHMLDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCR-FLQGKHTDPAEVDNIRTALQNKEPVTVQIQN- 79 (132)
T ss_dssp ----CCCCCEEEEECTTSTTCCEEEECHHHHHHHSCCHHHHTTSCGG-GGCCTTCCHHHHHHHHHHHHHTCCEEEEEEE-
T ss_pred hhHHhcCCCcEEEEeCCCCCCcEEEECHHHHHHhCcCHHHHcCCChh-hhCCCCCCHHHHHHHHHHHHcCCCeEEEEEE-
Confidence 357999999999999976 99999999999999999999999986 6666654443334444555444443334433
Q ss_pred EeccccCCcEEEEEEEeEeeccCCCCEEEEEEEEEechhHHHHHHHHHhHHHHHHHH
Q 037299 683 TFGAENRKKAVFVVVNACSSKDYTNNIVGVCFVGQDVTDQKLVMDKFIHIQGDYKAI 739 (1111)
Q Consensus 683 ~~~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DITerK~ae~~L~~se~~l~~i 739 (1111)
.++||+.+|+.++..|+++.+ +.+++++++|||++|++|++|++++++++.+
T Consensus 80 ---~~kdG~~~~~~~~~~~~~~~~--~~~~~~~~~DITe~k~~e~~l~~~~~~l~~l 131 (132)
T 2pr5_A 80 ---YKKDGTMFWNELNIDPMEIED--KTYFVGIQNDITKQKEYEKLLEDSLTEITAL 131 (132)
T ss_dssp ---ECTTSCEEEEEEEEEEEEETT--EEEEEEEEEECHHHHHHHHHHHHHHHHHHHT
T ss_pred ---EecCCCeeeeEEEEEeccCCC--eeEEEEEEEeCcHHHHHHHHHHHHHHHHHhc
Confidence 378999999999999999876 8899999999999999999999999888754
No 38
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=99.59 E-value=6.7e-15 Score=140.39 Aligned_cols=117 Identities=15% Similarity=0.094 Sum_probs=96.9
Q ss_pred HHHHHHHHHhcCCcEEEEcCCccEEeecHHHHHHcCCChhhhcCCcccccccchhhHHHHHHHHHHHHcCCCccceEEEE
Q 037299 602 AREMVRLIETATAPIFAVDVHGCVNGWNAKVAELTGLSVEEAMGKSLVHDLVYKEYEEIVDNLLHHALKGEEDKNVEIKL 681 (1111)
Q Consensus 602 ~~~l~~lie~~~~~I~~~D~dG~I~~~N~a~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~l 681 (1111)
+++++.++++++++|+++|.+|+|+++|+++++++||+.+|++|+++. .+.+++........+...+..+.....++..
T Consensus 4 ~~~~~~~~~~~~~~i~~~d~~g~i~~~N~a~~~~~G~~~~elig~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 82 (120)
T 2gj3_A 4 PEIFRQTVEHAPIAISITDLKANILYANRAFRTITGYGSEEVLGKNES-ILSNGTTPRLVYQALWGRLAQKKPWSGVLVN 82 (120)
T ss_dssp HHHHHHHHHHCSSEEEEECTTCBEEEECHHHHHHHCCCTTGGGGCBGG-GGCCTTSCHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred HHHHHHHHHhCCCeEEEECCCCCEEeehHHHHHHHCcCHHHHcCCCHH-HcCCCCCCHHHHHHHHHHHHcCCCEEEEEEE
Confidence 467889999999999999999999999999999999999999999987 6766655444444444555555444444443
Q ss_pred EEeccccCCcEEEEEEEeEeeccCCCCEEEEEEEEEechhHH
Q 037299 682 RTFGAENRKKAVFVVVNACSSKDYTNNIVGVCFVGQDVTDQK 723 (1111)
Q Consensus 682 ~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DITerK 723 (1111)
.+++|..+|+.++..|++|.+|.+.+++++++|||++|
T Consensus 83 ----~~~dG~~~~~~~~~~pi~~~~g~~~~~v~~~~DITe~k 120 (120)
T 2gj3_A 83 ----RRKDKTLYLAELTVAPVLNEAGETIYYLGMHRDTSELH 120 (120)
T ss_dssp ----ECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCSCC
T ss_pred ----EcCCCCEEEEEEEEEEEECCCCCEEEEEEEeccCcccC
Confidence 47899999999999999999999999999999999875
No 39
>3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A
Probab=99.59 E-value=1.2e-14 Score=145.34 Aligned_cols=139 Identities=14% Similarity=0.138 Sum_probs=112.4
Q ss_pred HHHHHHHHHhcCCcEEEEc-CCccEEeecHHHHHHcCCChhhhcCCcccccccchhhHHHHHHHHHHHHcCCCccc-eEE
Q 037299 602 AREMVRLIETATAPIFAVD-VHGCVNGWNAKVAELTGLSVEEAMGKSLVHDLVYKEYEEIVDNLLHHALKGEEDKN-VEI 679 (1111)
Q Consensus 602 ~~~l~~lie~~~~~I~~~D-~dG~I~~~N~a~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~-~e~ 679 (1111)
+++|+.++++++++|+++| .+|+|+++|+++++++|++ +++|+++. +++++.....+...+..++..+.... .+.
T Consensus 16 ~~~~~~~~~~~~~~i~~~d~~~~~i~~~N~~~~~~~g~~--~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 92 (158)
T 3k3c_A 16 AEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLL--DTVGQPAR-EVYPELEGQQIYEMLDRVYQTGEPQSGSEW 92 (158)
T ss_dssp HHHHHHHHHHCSSEEEEEETTTTEEEEECHHHHHHCTTC--CSTTSBHH-HHSGGGGGTTHHHHHHHHHHHCCCEEEEEE
T ss_pred HHHHHHHHhcCCceEEEEECCCcEeHHHHHHHHHHcCCc--hhcCCcHH-HhCCchhHHHHHHHHHHHHHhCCcccccce
Confidence 4578999999999999999 9999999999999999999 89999988 88888776667777888875554432 223
Q ss_pred EEEEeccccC-CcEEEEEEEeEeeccCCCCEEEEEEEEEechhHHHHHHHHHhHHHHHHHHHhCCC
Q 037299 680 KLRTFGAENR-KKAVFVVVNACSSKDYTNNIVGVCFVGQDVTDQKLVMDKFIHIQGDYKAIVHSPN 744 (1111)
Q Consensus 680 ~l~~~~~~~d-G~~~~v~v~~~pi~d~~G~v~gvv~v~~DITerK~ae~~L~~se~~l~~i~~~~~ 744 (1111)
.+... ...+ |..+|+.++..|+++.+|.+.|++++++|||++|+++++|++....++..++++.
T Consensus 93 ~~~~~-~~~~~g~~~~~~~~~~pi~~~~g~~~g~~~~~~DITe~k~~e~~l~~~~~~l~~~v~~~~ 157 (158)
T 3k3c_A 93 RLQTD-YDGSGVEERYFDFVVTPRRRADGSIEGVQLIVDDVTSRVRARQAAEARVEELSERYRNVR 157 (158)
T ss_dssp EEEEE-SSSSCEEEEEEEEEEEEEECTTSCEEEEEEEEEECHHHHHHHHHHHHHHHHHHHC-----
T ss_pred eEEec-cCCCCcceEEEEEEEEEeECCCCCEEEEEEEEEehhHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 33222 1123 7789999999999999999999999999999999999999999999888777653
No 40
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=99.59 E-value=1.8e-14 Score=162.93 Aligned_cols=223 Identities=12% Similarity=0.072 Sum_probs=163.1
Q ss_pred cEEEEc-CCccEEeecHHHHHHcCCChhhhcCCcccccccchhhHHHHHHHHHHHHcCCC--------ccceEEEEEEec
Q 037299 615 PIFAVD-VHGCVNGWNAKVAELTGLSVEEAMGKSLVHDLVYKEYEEIVDNLLHHALKGEE--------DKNVEIKLRTFG 685 (1111)
Q Consensus 615 ~I~~~D-~dG~I~~~N~a~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~--------~~~~e~~l~~~~ 685 (1111)
-+++++ .+|+|+|+|+.+..++||++++++|+++. +++||+|.+.+...+...+.... ...+-.++....
T Consensus 5 F~~vv~~~~G~i~yvS~~~~~~LGy~~~el~G~s~~-d~ihp~D~~~f~~~L~~gl~~~~~~~~~~~~~rsffcR~~rr~ 83 (339)
T 3rty_A 5 FCCVISMHDGIVLYTTPSITDVLGYPRDMWLGRSFI-DFVHLKDRATFASQITTGIPIAESRGSVPKDAKSTFCVMLRRY 83 (339)
T ss_dssp EEEEEETTTCBEEEECTTHHHHHCCCTTSSTTSBGG-GGBCHHHHHHHHHHHHTTSCCC----------CCEEEEEEECC
T ss_pred EEEEEECCCcEEEEEChHHHHHcCCCHHHHCCCcHH-HhcCHHHHHHHHHHHhcCCCCCccccCCCCCCceEEEEEEecc
Confidence 356778 69999999999999999999999999999 99999999987776654322110 112223332111
Q ss_pred ------------cccCCcEEEEEEEeEeeccC---------CCCEEEEEEEEEechhHHHHHHHHHhHHHHHHHHHhCCC
Q 037299 686 ------------AENRKKAVFVVVNACSSKDY---------TNNIVGVCFVGQDVTDQKLVMDKFIHIQGDYKAIVHSPN 744 (1111)
Q Consensus 686 ------------~~~dG~~~~v~v~~~pi~d~---------~G~v~gvv~v~~DITerK~ae~~L~~se~~l~~i~~~~~ 744 (1111)
..+.+.++|+.....++.++ .|...+++.++++++.......++ +. .
T Consensus 84 ~~l~s~gy~v~~~~~~~~p~~l~~~~~~~~~e~~~~~~~~~~g~~~~lv~~a~~i~s~~~~p~e~----------~~--~ 151 (339)
T 3rty_A 84 RGLKSGGFGVIGRPVSYEPFRLGLTFREAPEEARPDNYMVSNGTNMLLVICATPIKSSYKVPDEI----------LS--Q 151 (339)
T ss_dssp C-------------CCEEEEEEEEEEEECCCC----------CCCEEEEEEEEECCCSCSSTTBB----------CC--S
T ss_pred CCCCcCCcceecccccceeEEEEEEEeccccccccccccccCCceEEEEEEcccCCccccccchh----------hc--c
Confidence 01234455666666666655 577788899999998643321111 00 0
Q ss_pred CCCCCccccCCCCccccchhhhHHHhCCCccccccccccccccccccccCChhhHHHHHHHHHhhhCCCCc-----ceee
Q 037299 745 PLIPPIFASDENTCCSEWNTAMEKLTGWSRGDIIGKMLVGEVFGSCCRLKGPDALTKFMIALHNAFGGQDT-----EKFP 819 (1111)
Q Consensus 745 ~l~~~I~v~D~~g~ii~~N~a~~~l~G~~~eeliGk~l~~~v~~~~~~l~~~~~~~~~~~~l~~~~~~~~~-----~~~e 819 (1111)
.....++..|.+|+++++|+++..++||.++|++|++. ..+.||+|...+...+...+..+.. ...+
T Consensus 152 ~~~~fi~r~~~dG~~~yvn~~~~~lLGY~peELiG~s~--------~~~vHPdD~~~~~~~~~~~l~~G~~~~~~~~s~~ 223 (339)
T 3rty_A 152 KSPKFAIRHTATGIISHVDSAAVSALGYLPQDLIGRSI--------MDFYHHEDLSVMKETYETVMKKGQTAGASFCSKP 223 (339)
T ss_dssp SCCEEEEEEETTCBEEEECTTHHHHHCCCHHHHTTSBG--------GGGBCGGGHHHHHHHHHHHHHHTTSTTCCCBCCC
T ss_pred CCceEEEEECCCCeEEEcChhhhcccCCCHHHHcCCcH--------HHEECHHHHHHHHHHHHHHHHcCCcccccccceE
Confidence 11125778899999999999999999999999999975 4667899999988888887764433 3678
Q ss_pred eeeecCCCCEEEEEEEEeeeecCC-CCEEEEEeeeecccH
Q 037299 820 FPLFDRNGKYVQALLTANKRVNME-GQIVGAFCFLQIASP 858 (1111)
Q Consensus 820 ~~~~~~dG~~~~v~~~~~pi~d~~-G~v~g~v~~~~DITe 858 (1111)
++++++||.++|+..++++++|.. +++..+++.-+.++.
T Consensus 224 yR~~~kdG~~vWlet~~~~~~np~s~~~~~II~~h~vi~~ 263 (339)
T 3rty_A 224 YRFLIQNGCYVLLETEWTSFVNPWSRKLEFVVGHHRVFQG 263 (339)
T ss_dssp EEEECTTSCEEEEEEEEEEEECTTTCSEEEEEEEEEEEEC
T ss_pred EEEEccCCCEEEEEEEEEEEECCCCCCeeEEEEEEEECCC
Confidence 999999999999999999999976 577778888777764
No 41
>4hia_A LOV protein; PAS, HTH, signaling protein; HET: FMN; 1.95A {Rhodobacter sphaeroides} PDB: 4hnb_A* 4hj4_A* 4hj6_A* 4hj3_A*
Probab=99.58 E-value=1.9e-15 Score=154.32 Aligned_cols=126 Identities=10% Similarity=-0.040 Sum_probs=108.7
Q ss_pred HHHHHHHHHhcCCcEEEEcCC---ccEEeecHHHHHHcCCChhhhcCCcccccccchhhHHHHHHHHHHHHcCCCccceE
Q 037299 602 AREMVRLIETATAPIFAVDVH---GCVNGWNAKVAELTGLSVEEAMGKSLVHDLVYKEYEEIVDNLLHHALKGEEDKNVE 678 (1111)
Q Consensus 602 ~~~l~~lie~~~~~I~~~D~d---G~I~~~N~a~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e 678 (1111)
.++++.++++++++|+++|.+ |+|++||+++++++||++++++|+++. .++++++.......+..++..+.....+
T Consensus 6 ~~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~a~~~~~G~~~~e~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e 84 (176)
T 4hia_A 6 FEKIRAVFDRSGVALTLVDMSLPEQPVVLANPPFLRMTGYTEGQILGFNCR-FLQRGDENAQARADIRDALKLGRELQVV 84 (176)
T ss_dssp HHHHHHHHHHCSSCCEEEETTSTTCCEEEECHHHHHHHTCCHHHHTTSCGG-GGCCTTCCHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHhcCCCcEEEEecCCCCCcEEEECHHHHHHHCcCHHHHcCCCcc-eeeCCCCCHHHHHHHHHHHHcCCceEEE
Confidence 456889999999999999999 999999999999999999999999987 7888877776667777777666555444
Q ss_pred EEEEEeccccCCcEEEEEEEeEeeccCCCCEEEEEEEEEechhHHHHHHHHHhH
Q 037299 679 IKLRTFGAENRKKAVFVVVNACSSKDYTNNIVGVCFVGQDVTDQKLVMDKFIHI 732 (1111)
Q Consensus 679 ~~l~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DITerK~ae~~L~~s 732 (1111)
+.. .+++|..+|+.++..|++|.+|.+.+++++++|||++|++|+++...
T Consensus 85 ~~~----~~~dG~~~~~~~~~~pi~~~~g~~~~~~~~~~DITe~k~~e~~~~~a 134 (176)
T 4hia_A 85 LRN----YRANDEPFDNLLFLHPVGGRPDAPDYFLGSQFELGRSGNSEEAAAAG 134 (176)
T ss_dssp EEE----ECTTCCEEEEEEEEEEESSBTTBCSEEEEEEEEESSSGGGHHHHHHH
T ss_pred EEE----EcCCCCEEEEEEEEEEeeCCCCCeEEEEEEEEECcHhhHHHHHHHHh
Confidence 444 37899999999999999999999999999999999999999984433
No 42
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=99.57 E-value=7.6e-15 Score=160.59 Aligned_cols=193 Identities=9% Similarity=0.017 Sum_probs=118.1
Q ss_pred EeeccCCCCEEEEEEEEEe------chhHHHHHHHHHhHHHHHHHHHhCCCCCCCCccccCC---CCccccchhhhHHHh
Q 037299 700 CSSKDYTNNIVGVCFVGQD------VTDQKLVMDKFIHIQGDYKAIVHSPNPLIPPIFASDE---NTCCSEWNTAMEKLT 770 (1111)
Q Consensus 700 ~pi~d~~G~v~gvv~v~~D------ITerK~ae~~L~~se~~l~~i~~~~~~l~~~I~v~D~---~g~ii~~N~a~~~l~ 770 (1111)
.+++|.++....+.....+ +.....+++++++++++|+.+++++++ +|+++|. +|+|++||+++++++
T Consensus 23 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~---~i~~~d~~~~~g~i~~~N~a~~~l~ 99 (258)
T 3p7n_A 23 RDLYDDDDKDHPFTMGQDRPIDGSGAPGADDTRVEVQPPAQWVLDLIEASPI---ASVVSDPRLADNPLIAINQAFTDLT 99 (258)
T ss_dssp --------------------------------------CCHHHHHHHHTCSS---EEEEECTTSTTCCEEEECHHHHHHH
T ss_pred CCccccCCCcCceeccCCCCCCcccCCcchhhHHHHHhHHHHHHHHHhcCCc---cEEEEcCCCCCCcEEEEhHHHHHHc
Confidence 3455555555444333333 334445566789999999999999987 8999999 899999999999999
Q ss_pred CCCccccccccccccccccccccCChhhHHHHHHHHHhhhCCCCcceeeeeeecCCCCEEEEEEEEeeeecCCCCEEEEE
Q 037299 771 GWSRGDIIGKMLVGEVFGSCCRLKGPDALTKFMIALHNAFGGQDTEKFPFPLFDRNGKYVQALLTANKRVNMEGQIVGAF 850 (1111)
Q Consensus 771 G~~~eeliGk~l~~~v~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v 850 (1111)
||++++++|++.. .+.++++...+...+...+..+..+..++.+.+++|..+|+.++..|+.|.+|.+.+++
T Consensus 100 G~~~~el~g~~~~--------~l~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~dG~~~~~~~~~~pi~d~~g~~~~~v 171 (258)
T 3p7n_A 100 GYSEEECVGRNCR--------FLAGSGTEPWLTDKIRQGVREHKPVLVEILNYKKDGTPFRNAVLVAPIYDDDDELLYFL 171 (258)
T ss_dssp CCCGGGTTTSCGG--------GGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCSEEEE
T ss_pred CCCHHHHCCCChh--------hccCCCCchhHHHHHHHHHHcCCCeEEEEEEEcCCCCEEEEeeEEEEEEcCCCCEEEEE
Confidence 9999999999852 22335555555666666777777888999999999999999999999999999999999
Q ss_pred eeeecccHHHHH--HHHHHHHHHHHH---HHHHHH---------HHHHHHHhhhHHHHHHHHHHHHh
Q 037299 851 CFLQIASPELQQ--ALTVQRQQEKKC---FARLKE---------LAYICQEIKNPLSGVSFTNSLLE 903 (1111)
Q Consensus 851 ~~~~DITer~~~--e~el~~~~e~~~---~~r~~~---------La~isHEIrnPLt~I~~~~~LL~ 903 (1111)
++++|||++++. +.+++...+... ....+. ...++|++..++..|......+.
T Consensus 172 ~~~~DITerk~~~~e~~~~~~~~~l~~L~~r~~~i~~~~~~g~~~~eia~~l~~s~~tv~~~l~~i~ 238 (258)
T 3p7n_A 172 GSQVEVDDDQPNMGMARRERAAEMLKTLSPRQLEVTTLVASGLRNKEVAARLGLSEKTVKMHRGLVM 238 (258)
T ss_dssp EEEEEC-------CHHHHHHHHHHHTTSCHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred EEeeecchhhhhhhHHHHHHHHHHHhhcCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 999999999433 332222111110 001111 35567777777777765555443
No 43
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=99.57 E-value=3.3e-15 Score=163.49 Aligned_cols=175 Identities=16% Similarity=0.093 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcEEEEcC---CccEEeecHHHHHHcCCChhhhcCCcccccccchhhHHHHHHHHHHHH
Q 037299 593 QGVDELSSVAREMVRLIETATAPIFAVDV---HGCVNGWNAKVAELTGLSVEEAMGKSLVHDLVYKEYEEIVDNLLHHAL 669 (1111)
Q Consensus 593 ~~~~eL~~~~~~l~~lie~~~~~I~~~D~---dG~I~~~N~a~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l 669 (1111)
...+++++.+++|+.++++++++||++|. +|+|++||+++++++||++++++|+++. .++++++.......+...+
T Consensus 53 ~~~~~l~~~~~~~~~i~~~~~~~i~~~d~~~~~g~i~~~N~a~~~l~G~~~~el~g~~~~-~l~~~~~~~~~~~~~~~~l 131 (258)
T 3p7n_A 53 DTRVEVQPPAQWVLDLIEASPIASVVSDPRLADNPLIAINQAFTDLTGYSEEECVGRNCR-FLAGSGTEPWLTDKIRQGV 131 (258)
T ss_dssp --------CCHHHHHHHHTCSSEEEEECTTSTTCCEEEECHHHHHHHCCCGGGTTTSCGG-GGCCTTCCHHHHHHHHHHH
T ss_pred hhHHHHHhHHHHHHHHHhcCCccEEEEcCCCCCCcEEEEhHHHHHHcCCCHHHHCCCChh-hccCCCCchhHHHHHHHHH
Confidence 34556778888999999999999999999 9999999999999999999999999987 7888877776666677777
Q ss_pred cCCCccceEEEEEEeccccCCcEEEEEEEeEeeccCCCCEEEEEEEEEechhH--HHHHHHHHhHHHHHHHHHhCCCCCC
Q 037299 670 KGEEDKNVEIKLRTFGAENRKKAVFVVVNACSSKDYTNNIVGVCFVGQDVTDQ--KLVMDKFIHIQGDYKAIVHSPNPLI 747 (1111)
Q Consensus 670 ~~~~~~~~e~~l~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DITer--K~ae~~L~~se~~l~~i~~~~~~l~ 747 (1111)
..+.....++.+ .+++|..+|+.++..|++|.+|.+.+++++++|||++ ++.+.++.+.+..+..+.+....
T Consensus 132 ~~~~~~~~e~~~----~~~dG~~~~~~~~~~pi~d~~g~~~~~v~~~~DITerk~~~~e~~~~~~~~~l~~L~~r~~~-- 205 (258)
T 3p7n_A 132 REHKPVLVEILN----YKKDGTPFRNAVLVAPIYDDDDELLYFLGSQVEVDDDQPNMGMARRERAAEMLKTLSPRQLE-- 205 (258)
T ss_dssp HHTCCEEEEEEE----ECTTSCEEEEEEEEEEEECTTSCSEEEEEEEEEC-------CHHHHHHHHHHHTTSCHHHHH--
T ss_pred HcCCCeEEEEEE----EcCCCCEEEEeeEEEEEEcCCCCEEEEEEEeeecchhhhhhhHHHHHHHHHHHhhcCHHHHH--
Confidence 666554444444 4789999999999999999999999999999999999 44444444443333211111000
Q ss_pred CCccccCCCCccccchhhhHHHhCCCcccccc
Q 037299 748 PPIFASDENTCCSEWNTAMEKLTGWSRGDIIG 779 (1111)
Q Consensus 748 ~~I~v~D~~g~ii~~N~a~~~l~G~~~eeliG 779 (1111)
++.....| ..|+...+.+|++...+..
T Consensus 206 --i~~~~~~g---~~~~eia~~l~~s~~tv~~ 232 (258)
T 3p7n_A 206 --VTTLVASG---LRNKEVAARLGLSEKTVKM 232 (258)
T ss_dssp --HHHHHHTT---CCHHHHHHHHTCCHHHHHH
T ss_pred --HHHHHHcC---CCHHHHHHHHCcCHHHHHH
Confidence 11111122 3789999999998766544
No 44
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=99.56 E-value=9.7e-15 Score=139.25 Aligned_cols=115 Identities=12% Similarity=0.197 Sum_probs=98.9
Q ss_pred HHHHHHhcCCcEEEEcCCccEEeecHHHHHHcCCChhhhcCCcccccccchhhHHHHHHHHHHHHc-CCCccceEEEEEE
Q 037299 605 MVRLIETATAPIFAVDVHGCVNGWNAKVAELTGLSVEEAMGKSLVHDLVYKEYEEIVDNLLHHALK-GEEDKNVEIKLRT 683 (1111)
Q Consensus 605 l~~lie~~~~~I~~~D~dG~I~~~N~a~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~-~~~~~~~e~~l~~ 683 (1111)
+..+++++++.|+.+|.+|+++++|+++++++||++++++|+++. ++++|++.+.+...+..++. ++.....++++.
T Consensus 4 ~~ll~e~~~d~i~~~d~~g~i~~~n~~~~~~~G~~~~el~g~~~~-~~i~p~d~~~~~~~~~~~~~~~~~~~~~e~r~~- 81 (121)
T 3f1p_B 4 KGLNVCQPTRFISRHNIEGIFTFVDHRCVATVGYQPQELLGKNIV-EFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFR- 81 (121)
T ss_dssp ----CCCCCEEEEEECTTSBEEEECTTHHHHHSCCGGGTTTSBGG-GGBCTTTHHHHHHHHHHHTTSTTCCEEEEEEEE-
T ss_pred ccceecCCCceEEEECCCceEEEECcchhhhhCCChHHHcCCCHH-HeECHHHHHHHHHHHHHHHhcCCCcccEEEEEE-
Confidence 456899999999999999999999999999999999999999988 89999999999998888885 444455555554
Q ss_pred eccccCCcEEEEEEEeEeeccC-CCCEEEEEEEEEechhHHH
Q 037299 684 FGAENRKKAVFVVVNACSSKDY-TNNIVGVCFVGQDVTDQKL 724 (1111)
Q Consensus 684 ~~~~~dG~~~~v~v~~~pi~d~-~G~v~gvv~v~~DITerK~ 724 (1111)
+++|+.+|+.+++.|++|. +|.+.+++++.+|||++|+
T Consensus 82 ---~~dG~~~w~~~~~~~~~~~~~g~~~~iv~~~~DIT~~kq 120 (121)
T 3f1p_B 82 ---SKNQEWLWMRTSSFTFQNPYSDEIEYIICTNTNVKNSSQ 120 (121)
T ss_dssp ---CTTSCEEEEEEEEEEECCTTCCCCCEEEEEEEECCCC--
T ss_pred ---ecCCCEEEEEEEEEEEECCCCCceeEEEEEeEEcccccC
Confidence 7899999999999999987 8899999999999999886
No 45
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=99.55 E-value=2.2e-14 Score=141.53 Aligned_cols=137 Identities=11% Similarity=0.171 Sum_probs=115.6
Q ss_pred HHHHhHHHHHHHHHhCCCCCCCCccccCCCCccccchhhhHHHhCCCccccccccccccccccccccCChhhHHHHHHHH
Q 037299 727 DKFIHIQGDYKAIVHSPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGDIIGKMLVGEVFGSCCRLKGPDALTKFMIAL 806 (1111)
Q Consensus 727 ~~L~~se~~l~~i~~~~~~l~~~I~v~D~~g~ii~~N~a~~~l~G~~~eeliGk~l~~~v~~~~~~l~~~~~~~~~~~~l 806 (1111)
++|++++++|+.++++++. ++|.+|.++.+++||+++.+++||+++++.+... .+..+.||++...+...+
T Consensus 2 ~aL~~se~rl~~~~~~~~~---g~w~~d~~~~~~~~s~~~~~~~G~~~~~~~~~~~------~~~~~ihpdD~~~~~~~~ 72 (142)
T 3mr0_A 2 NALSASEERFQLAVSGASA---GLWDWNPKTGAMYLSPHFKKIMGYEDHELPDEIT------GHRESIHPDDRARVLAAL 72 (142)
T ss_dssp -------CCHHHHHHHTTC---EEEEECTTTCCEEECHHHHHHTTCCGGGSCSEEC---------CCBCTTTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc---EEEEEEcCCCeEEECHHHHHHhCCCccccCCCHH------HHHhhcCHHHHHHHHHHH
Confidence 4688899999999999887 8999999999999999999999999988776421 345778899999999999
Q ss_pred HhhhCCCCcceeeeeeecCCCCEEEEEEEEeeeecCCCCEEEEEeeeecccHHHHHHHHHHHHHHH
Q 037299 807 HNAFGGQDTEKFPFPLFDRNGKYVQALLTANKRVNMEGQIVGAFCFLQIASPELQQALTVQRQQEK 872 (1111)
Q Consensus 807 ~~~~~~~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~~~~DITer~~~e~el~~~~e~ 872 (1111)
..++.++..+..++++.+++|+++|+...+.++.|.+|.+.+++++++|||++|++|.++++..++
T Consensus 73 ~~~~~~~~~~~~e~r~~~~~G~~~w~~~~~~~~~d~~g~~~~~~G~~~DITerk~~E~~L~~~~~~ 138 (142)
T 3mr0_A 73 KAHLEHRDTYDVEYRVRTRSGDFRWIQSRGQALWNSAGEPYRMVGWIMDVTDRKRDEDALRVSREE 138 (142)
T ss_dssp HHHHHHCCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCceEEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEcCchHHHHHHHHHHHHHH
Confidence 998888888999999999999999999999999999999999999999999999999877665443
No 46
>3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A*
Probab=99.54 E-value=1.2e-14 Score=145.95 Aligned_cols=133 Identities=15% Similarity=0.114 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcEEEEcC---CccEEeecHHHHHHcCCChhhhcCCcccccccchhhHHHHHHHHHHH
Q 037299 592 LQGVDELSSVAREMVRLIETATAPIFAVDV---HGCVNGWNAKVAELTGLSVEEAMGKSLVHDLVYKEYEEIVDNLLHHA 668 (1111)
Q Consensus 592 ~~~~~eL~~~~~~l~~lie~~~~~I~~~D~---dG~I~~~N~a~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~ 668 (1111)
++..++++..+++++.++++++++|+++|. +|+|+++|+++++++||+.++++|+++. .+++++........+...
T Consensus 24 ~~~~~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~g~~~~-~l~~~~~~~~~~~~~~~~ 102 (166)
T 3ue6_A 24 SKANRILEDPDYSLVKALQMAQQNFVITDASLPDNPIVYASRGFLTLTGYSLDQILGRNCR-FLQGPETDPRAVDKIRNA 102 (166)
T ss_dssp -------CCCCCHHHHHHHHTTSCEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGG-GGCCTTSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhcCCceEEEEEccCCCCcEEEECHHHHHHhCcCHHHHcCCCHh-heeCCCCCHHHHHHHHHH
Confidence 344556667778899999999999999999 7999999999999999999999999987 777777666666666666
Q ss_pred HcCCCccceEEEEEEeccccCCcEEEEEEEeEeeccCCCCEEEEEEEEEechhHHHHHHHH
Q 037299 669 LKGEEDKNVEIKLRTFGAENRKKAVFVVVNACSSKDYTNNIVGVCFVGQDVTDQKLVMDKF 729 (1111)
Q Consensus 669 l~~~~~~~~e~~l~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DITerK~ae~~L 729 (1111)
+..+.....++.+. +++|..+|+.++..|+++.+|.+.|++++++|||++|+++...
T Consensus 103 ~~~~~~~~~e~~~~----~~~g~~~~~~~~~~~i~~~~g~~~~~~~~~~DITe~k~~~~~~ 159 (166)
T 3ue6_A 103 ITKGVDTSVCLLNY----RQDGTTFWNLFFVAGLRDSKGNIVNYVGVQSKVSEDYAKLLVN 159 (166)
T ss_dssp HHHTCCEEEEEEEE----CTTSCEEEEEEEEEEEECTTSCEEEEEEECCBCCHHHHHHHHH
T ss_pred HhcCCceEEEEEEE----cCCCCEEEEEEEEEeeeCCCCCEEEEEEEEEechHHHHHHHHH
Confidence 66555544444443 6899999999999999999999999999999999999988763
No 47
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum}
Probab=99.54 E-value=2.8e-14 Score=135.12 Aligned_cols=122 Identities=11% Similarity=0.092 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEcCCccEEeecHHHHHHcCCChhhhcC--CcccccccchhhHHHHHHHHHHHHcCCCcc
Q 037299 598 LSSVAREMVRLIETATAPIFAVDVHGCVNGWNAKVAELTGLSVEEAMG--KSLVHDLVYKEYEEIVDNLLHHALKGEEDK 675 (1111)
Q Consensus 598 L~~~~~~l~~lie~~~~~I~~~D~dG~I~~~N~a~~~l~G~~~eeliG--~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~ 675 (1111)
|++++++|+.+++++++++|.+|.+|++++||+++++++|+++++++| ..+. .+++|++.+.+...+..++.++...
T Consensus 2 l~~~~~~l~~~~~~~~~~i~~~d~~~~~~~~n~~~~~~~G~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~ 80 (125)
T 3nja_A 2 NAMAEKLLHTAESDAGIGSWVLHMESGRLEWSQAVHDIFGTDSATFDATEDAYF-QRVHPDDRARVRRELDRHVLGDRPF 80 (125)
T ss_dssp ---------------CCEEEEEETTTTEEEECHHHHHHHTCCTTTCCCBHHHHH-HHBCTTTHHHHHHHHHHHHHSCCCE
T ss_pred cHHHHHHHHHHHHhCCeeEEEEEcCCCcEEECHHHHHHhCCCcccccccHHHHH-hhcChhHHHHHHHHHHHHHhcCCCc
Confidence 456678899999999999999999999999999999999999999998 4555 7889999999999999998888776
Q ss_pred ceEEEEEEeccccCCcEEEEEEEeEeeccCCCCEEEEEEEEEechhHHH
Q 037299 676 NVEIKLRTFGAENRKKAVFVVVNACSSKDYTNNIVGVCFVGQDVTDQKL 724 (1111)
Q Consensus 676 ~~e~~l~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DITerK~ 724 (1111)
..++++. +++|..+|+.+++.|+++.+|.+.+++++++|||++|+
T Consensus 81 ~~e~~~~----~~~g~~~~~~~~~~~~~~~~g~~~~~~g~~~DITe~k~ 125 (125)
T 3nja_A 81 DVEYRIV----RPDGQVRELLERNHIQRQASGQVDHLWGTVIDMTEHKQ 125 (125)
T ss_dssp EEEEEEE----CTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCC---
T ss_pred eEEEEEE----CCCCCEEEEEEeeEEEECCCCCEEEEEEEEEecccccC
Confidence 5566554 67999999999999999999999999999999999985
No 48
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=99.53 E-value=3.6e-14 Score=141.06 Aligned_cols=103 Identities=15% Similarity=0.178 Sum_probs=81.7
Q ss_pred ecHHHHHHHHHHHHHHHhhcCCCC--CceEEEEEEEccccCCCCceeEEEEEEEeeCCCCCChhhhhhccCCCCCC----
Q 037299 988 GDQARIQQVLADFLLNMVRYSPSA--EGWVEIHVRPTLKQSSEGQTIVHNEFRMVCPGEGLPPELVQDMFHSSRWM---- 1061 (1111)
Q Consensus 988 ~D~~~L~qVl~nLl~NAik~t~~~--~g~I~I~v~~~~~~~~~~~~~~~v~i~V~DnG~GIp~e~~~~iFepf~~~---- 1061 (1111)
.|...+.+++.||+.||+||+... ++.|.|++....+ .+.|+|+|+|+||+ .++++|++|+..
T Consensus 35 ~~~~~l~~il~~l~~Nai~h~~~~~~~~~I~i~~~~~~~---------~~~i~V~D~G~g~~--~~~~~~~~~~~~~~~~ 103 (145)
T 1th8_A 35 DELTEIKTVVSEAVTNAIIHGYNNDPNGIVSISVIIEDG---------VVHLTVRDEGVGIP--DIEEARQPLFTTKPEL 103 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTTCTTSEEEEEEEEETT---------EEEEEEEECSSCCS--CHHHHTCCC-------
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEEeCC---------EEEEEEEECCCCcC--hHHHhhcccccCCCCC
Confidence 578899999999999999998653 4789998877665 89999999999999 788999998533
Q ss_pred CCccchHHHHHHHHHHcCCEEEEEecCCceEEEEEEEeeCCCCCC
Q 037299 1062 TQEGLGLSMCRKILKLMNGEVQYIRESERCYFLIIFELPMPRRGS 1106 (1111)
Q Consensus 1062 ~G~GLGL~i~r~iVe~~gG~I~v~s~~ggstF~~~L~LP~~~~~~ 1106 (1111)
.|.|+||++|+++++ ++++++.++++| +|++.||.....+
T Consensus 104 ~~~GlGL~iv~~~~~----~i~~~~~~~~Gt-~v~~~lp~~~~~~ 143 (145)
T 1th8_A 104 ERSGMGFTIMENFMD----EVIVESEVNKGT-TVYLKKHGIHHHH 143 (145)
T ss_dssp CCCSCHHHHHHHHSS----EEEEEEETTTEE-EEEEEECCC----
T ss_pred CCCcchHHHHHHHHh----eEEEEeCCCCCE-EEEEEEecccccc
Confidence 578999999999988 899999877543 5555667766544
No 49
>3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis}
Probab=99.52 E-value=1.4e-14 Score=150.01 Aligned_cols=141 Identities=15% Similarity=0.200 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHhcCCcEEEEc-CCccEEeecHHHHHHcCCChhhhcCCcccccccchhhHHHHHHHHHHHHcCCCccc-e
Q 037299 600 SVAREMVRLIETATAPIFAVD-VHGCVNGWNAKVAELTGLSVEEAMGKSLVHDLVYKEYEEIVDNLLHHALKGEEDKN-V 677 (1111)
Q Consensus 600 ~~~~~l~~lie~~~~~I~~~D-~dG~I~~~N~a~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~-~ 677 (1111)
..+++|+.+++++|++|+++| .+|+|+++|+++++++|++ +++|+++. +++++.....+...+..++..+.... .
T Consensus 34 ~~~~~l~~l~~~~~~~i~~~d~~~g~i~~~N~a~~~l~G~~--~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 110 (185)
T 3kx0_X 34 GAAEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLL--DTVGQPAR-EVYPELEGQQIYEMLDRVYQTGEPQSGS 110 (185)
T ss_dssp CCHHHHHHHHHHCSSEEEEEETTTTEEEEECHHHHHHCCCC--SCTTSBHH-HHCTTSCSSSSHHHHHHHHHHCCCEEEE
T ss_pred hhHHHHHHHHhcCCceEEEEECCCcEEEEEcHHHHHHcCCc--cccCCcHH-HHCCchhhhhHHHHHHHHHHcCCccccc
Confidence 445678999999999999999 9999999999999999999 99999988 77777665555566777775444432 2
Q ss_pred EEEEEEecccc-C-CcEEEEEEEeEeeccCCCCEEEEEEEEEechhHHHHHHH----HHhHHHHHHHHHhCCCC
Q 037299 678 EIKLRTFGAEN-R-KKAVFVVVNACSSKDYTNNIVGVCFVGQDVTDQKLVMDK----FIHIQGDYKAIVHSPNP 745 (1111)
Q Consensus 678 e~~l~~~~~~~-d-G~~~~v~v~~~pi~d~~G~v~gvv~v~~DITerK~ae~~----L~~se~~l~~i~~~~~~ 745 (1111)
++.+.. .++ + |..+|+.++..|++|.+|.+.|++++++|||++|++|++ |++++++++.++++++.
T Consensus 111 ~~~~~~--~~~~~gg~~~~~~~~~~pi~~~~g~~~g~~~~~~DITerk~~e~~~~~ll~~~~~~l~~~~~~~~~ 182 (185)
T 3kx0_X 111 EWRLQT--DYDGSGVEERYFDFVVTPRRRADGSIEGVQLIVDDVTSRVRARQAAEARVEELSERYRNVRDSATV 182 (185)
T ss_dssp EEEEC----------CCEEEEEEEEEEECTTSCEEEEEEEEEECHHHHTTCC----------------------
T ss_pred ceeEEe--eccCCCCccEEEEEEEEEEECCCCCEEEEEEEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 233321 122 2 778999999999999999999999999999999999999 99999999999988764
No 50
>3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis}
Probab=99.52 E-value=4.8e-14 Score=134.94 Aligned_cols=123 Identities=15% Similarity=0.124 Sum_probs=97.0
Q ss_pred HHHhcCCcEEEEcC---CccEEeecHHHHHHcCCChhhhcCCcccccccchhhHHHHHHHHHHHHcCCCccceEEEEEEe
Q 037299 608 LIETATAPIFAVDV---HGCVNGWNAKVAELTGLSVEEAMGKSLVHDLVYKEYEEIVDNLLHHALKGEEDKNVEIKLRTF 684 (1111)
Q Consensus 608 lie~~~~~I~~~D~---dG~I~~~N~a~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~l~~~ 684 (1111)
++++++++|+++|. +|+|+++|+++++++|++.++++|+++. .+++++........+...+..+.....++.+.
T Consensus 2 ~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~e~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-- 78 (128)
T 3t50_A 2 ASEFTLMPMLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCR-FLQGHGTDPAHVRAIKSAIAAEKPIDIDIINY-- 78 (128)
T ss_dssp CCCCCSSCEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGG-GGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEE--
T ss_pred ccccCcccEEEecCCCCCCcEEEEcHHHHHHhCcCHHHHcCCCHh-hhcCCccCHHHHHHHHHHHHcCCCceeEEEEE--
Confidence 46889999999999 9999999999999999999999999987 77777666666666667776666554444443
Q ss_pred ccccCCcEEEEEEEeEeeccCCCCEEEEEEEEEechhHHHHHHHHHhHHHH
Q 037299 685 GAENRKKAVFVVVNACSSKDYTNNIVGVCFVGQDVTDQKLVMDKFIHIQGD 735 (1111)
Q Consensus 685 ~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DITerK~ae~~L~~se~~ 735 (1111)
+++|..+|+.++..|+.+.+|.+.|++++++|||++|+++++..+.+.+
T Consensus 79 --~~~g~~~~~~~~~~~i~~~~g~~~~~~~~~~DITe~k~~e~~~~~~~~~ 127 (128)
T 3t50_A 79 --KKSGEAFWNRLHISPVHNANGRLQHFVSSQLDVTLELVPRGSLEHHHHH 127 (128)
T ss_dssp --CTTCCEEEEEEEEEEEECTTSCEEEEEEEEEECHHHHC-----------
T ss_pred --cCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEcchhhhhhhhhhhcccC
Confidence 6799999999999999999999999999999999999999998877654
No 51
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=99.50 E-value=4.8e-14 Score=165.79 Aligned_cols=110 Identities=13% Similarity=0.180 Sum_probs=92.8
Q ss_pred EEecHHHHHHHHHHHHHHHhhcCCCCCc---eEEEEEEEccccCCCCceeEEEEEEEeeCCCCCChhhhhhccCCCC---
Q 037299 986 VYGDQARIQQVLADFLLNMVRYSPSAEG---WVEIHVRPTLKQSSEGQTIVHNEFRMVCPGEGLPPELVQDMFHSSR--- 1059 (1111)
Q Consensus 986 v~~D~~~L~qVl~nLl~NAik~t~~~~g---~I~I~v~~~~~~~~~~~~~~~v~i~V~DnG~GIp~e~~~~iFepf~--- 1059 (1111)
+.+|+.+|.|||.||+.||++|+.. ++ .|.|++...+.. + ..+.|+|+|||+|||++.++++|++|+
T Consensus 26 ~~~d~~~L~qvl~nLv~NAida~~~-gg~~p~I~I~i~~~~~~-~-----~~~~I~V~DnG~GI~~e~l~~iF~~f~~ts 98 (471)
T 1mu5_A 26 FPNPARALYQTVRELIENSLDATDV-HGILPNIKITIDLIDDA-R-----QIYKVNVVDNGIGIPPQEVPNAFGRVLYSS 98 (471)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHTTGG-GTCCCEEEEEEEEEETT-T-----TEEEEEEECCSCCCCGGGHHHHHHCCCCC-
T ss_pred EeCCHHHHHHHHHHHHHHHHHHhhc-CCCceEEEEEEEECCCc-C-----cEEEEEEEECCCCCCHHHHHHHhccccccc
Confidence 4567899999999999999999987 45 788888664410 0 178999999999999999999999973
Q ss_pred ------CCCCccchHHHHHHHHHHcCCE-EEEEecCCc-e-EEEEEEEeeCC
Q 037299 1060 ------WMTQEGLGLSMCRKILKLMNGE-VQYIRESER-C-YFLIIFELPMP 1102 (1111)
Q Consensus 1060 ------~~~G~GLGL~i~r~iVe~~gG~-I~v~s~~gg-s-tF~~~L~LP~~ 1102 (1111)
..+|+||||++|+.+++.|||+ |++.|.+++ + +|+|+|++|..
T Consensus 99 k~~~~~~~gg~GLGL~iv~~l~~~~gG~~i~v~S~~~~g~~~~~~~Lpl~~~ 150 (471)
T 1mu5_A 99 KYVNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDIN 150 (471)
T ss_dssp CCCCSCCSCSCTTTHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEECTT
T ss_pred ccccccCCCCceeeHHHHHHHHHHhCCCceeEEEecCCCceEEEEEEecccc
Confidence 2247999999999999999999 999998764 4 88999998875
No 52
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=99.50 E-value=4.4e-14 Score=167.86 Aligned_cols=111 Identities=14% Similarity=0.209 Sum_probs=92.4
Q ss_pred EEEec-HHHHHHHHHHHHHHHhhcCCCCCc---eEEEEEEEccccCCCCceeEEEEEEEeeCCCCCChhhhhhccCCCC-
Q 037299 985 AVYGD-QARIQQVLADFLLNMVRYSPSAEG---WVEIHVRPTLKQSSEGQTIVHNEFRMVCPGEGLPPELVQDMFHSSR- 1059 (1111)
Q Consensus 985 ~v~~D-~~~L~qVl~nLl~NAik~t~~~~g---~I~I~v~~~~~~~~~~~~~~~v~i~V~DnG~GIp~e~~~~iFepf~- 1059 (1111)
.+..| +.+|.|||.||+.||++|+.. ++ .|.|++...+. .. ..+.|+|+|||+|||++.++++|++|+
T Consensus 23 ~i~~~d~~~L~qvl~NLV~NAida~~~-gg~~p~I~I~i~~~~~--~~----~~~~I~V~DnG~GI~~e~l~~iF~~f~~ 95 (530)
T 2zbk_B 23 AGFPNPARALYQTVRELIENSLDATDV-HGILPNIKITIDLIDD--AR----QIYKVNVVDNGIGIPPQEVPNAFGRVLY 95 (530)
T ss_dssp GTCSSHHHHHHHHHHHHHHHHHTTTTT-TTCCCCCEEEEEEEET--TT----TEEEEEEECCSCCCCGGGSHHHHTSCCC
T ss_pred eEEcCcHHHHHHHHHHHHHHHHHHHhc-cCCCeEEEEEEEECCC--cC----ceEEEEEEECCCCCCHHHHHHHhccccc
Confidence 34455 599999999999999999987 56 78888866441 00 178999999999999999999999982
Q ss_pred --------CCCCccchHHHHHHHHHHcCCE-EEEEecCCc-e-EEEEEEEeeCC
Q 037299 1060 --------WMTQEGLGLSMCRKILKLMNGE-VQYIRESER-C-YFLIIFELPMP 1102 (1111)
Q Consensus 1060 --------~~~G~GLGL~i~r~iVe~~gG~-I~v~s~~gg-s-tF~~~L~LP~~ 1102 (1111)
..+|+||||++|+.+++.|||+ |++.|.+++ + +|+|+||+|..
T Consensus 96 tsk~~~~~~~gg~GLGLsiv~~l~~~~gG~~I~V~S~~~~g~~~~~~~Lpl~~~ 149 (530)
T 2zbk_B 96 SSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDIN 149 (530)
T ss_dssp SCCCCCSCCSCSSSSHHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEEETT
T ss_pred cCCcccccCCCCccchHHHHHHHHHHhCCCceEEEEecCCCeEEEEEEEEeccc
Confidence 2358899999999999999999 999998764 4 88999999875
No 53
>3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor}
Probab=99.50 E-value=6.4e-14 Score=140.27 Aligned_cols=129 Identities=13% Similarity=0.132 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEcCCccEEeecHHHHHHcCCChhhhcCCcccccccchhhHHHHHHHHHHHHcCCCcc
Q 037299 596 DELSSVAREMVRLIETATAPIFAVDVHGCVNGWNAKVAELTGLSVEEAMGKSLVHDLVYKEYEEIVDNLLHHALKGEEDK 675 (1111)
Q Consensus 596 ~eL~~~~~~l~~lie~~~~~I~~~D~dG~I~~~N~a~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~ 675 (1111)
.++++.+..+..+++++++||+++|.+|+|++||+++++++|++.++++|+++. +++++ ..+.+...+..++.++...
T Consensus 15 ~~~~~~~~~l~~il~~~~~gi~v~D~~g~I~~~N~a~~~~~G~~~~eviG~~~~-~~~p~-~~~~~~~~l~~vl~~G~~~ 92 (152)
T 3mxq_A 15 NAMAKSRLLLSELLDQLSFALCIVRNDYVIVKVNEYFESRVIFDGETMQGKNIL-ELFPE-SADYLKRKIDTALVIESSS 92 (152)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEEETTSBEEEECHHHHHTSSSCHHHHTTSBHH-HHSGG-GHHHHHHHHHHHHHHTSCE
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEcCCCEEEEECHHHHHHHCcCHHHHCCCCHH-HhcCC-hHHHHHHHHHHHHhcCCce
Confidence 457788888999999999999999999999999999999999999999999998 88887 7888888899999876542
Q ss_pred ceEEE-------EEEe-ccccCCcEEEEEEEeEeeccCCCCEEEEEEEEEechhHHHHH
Q 037299 676 NVEIK-------LRTF-GAENRKKAVFVVVNACSSKDYTNNIVGVCFVGQDVTDQKLVM 726 (1111)
Q Consensus 676 ~~e~~-------l~~~-~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DITerK~ae 726 (1111)
...++ +... ...++|...|+.++..|++|.+|++.|++.+++|||+++++.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ti~Pl~d~~G~v~gv~~ii~DVTe~~~a~ 151 (152)
T 3mxq_A 93 FSSWEQKPHLLPFKSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDVTIQASQQ 151 (152)
T ss_dssp EEECCSSSCSSCC----------CCEEEEEEEEEEECTTSCEEEEEEEEEEEECC----
T ss_pred eeecccccccccccccCCCCCCCcEEEEEEEEEEEECCCCCEEEEEEEEEECCHHHhcc
Confidence 21111 1100 112456788999999999999999999999999999998764
No 54
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=99.49 E-value=5.4e-14 Score=133.03 Aligned_cols=108 Identities=9% Similarity=0.040 Sum_probs=98.5
Q ss_pred cCCcEEEEcCCccEEeecHHHHHHcCCChhhhcCCcccccccchhhHHHHHHHHHHHHcCCCccceEEEEEEeccccCCc
Q 037299 612 ATAPIFAVDVHGCVNGWNAKVAELTGLSVEEAMGKSLVHDLVYKEYEEIVDNLLHHALKGEEDKNVEIKLRTFGAENRKK 691 (1111)
Q Consensus 612 ~~~~I~~~D~dG~I~~~N~a~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~l~~~~~~~dG~ 691 (1111)
+++.|+.+|.+|+++++|+++++++||++++++|+++. ++++|++.+.+...+..++.++.....++++. +++|+
T Consensus 8 ~~~~i~~~d~~g~i~~~n~~~~~~~Gy~~~el~g~~~~-~~~~p~d~~~~~~~~~~~~~~~~~~~~e~r~~----~~dG~ 82 (117)
T 3f1p_A 8 SKTFLSEHSMDMKFTYCDDRITELIGYHPEELLGRSAY-EFYHALDSENMTKSHQNLCTKGQVVSGQYRML----AKHGG 82 (117)
T ss_dssp GGEEEEEECTTCBEEEECTHHHHHHCCCHHHHTTSBGG-GGBCGGGHHHHHHHHHHHHHHSEEECCCEEEE----CTTSS
T ss_pred CccEEEEECCCceEEEECcChhhhhCCCHHHHcCCchh-heECHHHHHHHHHHHHHHHhCCCeeeeEEEEE----ecCCC
Confidence 46789999999999999999999999999999999988 89999999999999999888777666666665 78999
Q ss_pred EEEEEEEeEeeccC-CCCEEEEEEEEEechhHHH
Q 037299 692 AVFVVVNACSSKDY-TNNIVGVCFVGQDVTDQKL 724 (1111)
Q Consensus 692 ~~~v~v~~~pi~d~-~G~v~gvv~v~~DITerK~ 724 (1111)
.+|+.+++.|++|. +|.+.+++++.+|||++|+
T Consensus 83 ~~w~~~~~~~~~d~~~g~~~~iv~~~~DITer~~ 116 (117)
T 3f1p_A 83 YVWLETQGTVIYNPRNLQPQCIMCVNYVLSEIEK 116 (117)
T ss_dssp EEEEEEEEEEEEETTTTEEEEEEEEEEECSCCBC
T ss_pred EEEEEEeeEEEECCCCCCceEEEEEeeecccccc
Confidence 99999999999998 8999999999999999875
No 55
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=99.49 E-value=1.4e-13 Score=133.23 Aligned_cols=123 Identities=15% Similarity=0.140 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCccEEeecHHHHHHcCCChhhhcCCcccccccchhhHHHHHHHHHHHHc
Q 037299 591 ELQGVDELSSVAREMVRLIETATAPIFAVDVHGCVNGWNAKVAELTGLSVEEAMGKSLVHDLVYKEYEEIVDNLLHHALK 670 (1111)
Q Consensus 591 l~~~~~eL~~~~~~l~~lie~~~~~I~~~D~dG~I~~~N~a~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~ 670 (1111)
+++.+++|++.+++|+.++++++++|+++|.+|+|++||+++++++||+++|++|+++. .++++++.......+.....
T Consensus 4 ~~~~e~~l~~~~~~~~~l~~~~~d~i~~~d~~g~i~~~N~a~~~l~Gy~~~eliG~~~~-~l~~~~~~~~~~~~~~~~~~ 82 (130)
T 1d06_A 4 MLETEDVVRARDAHLRSILDTVPDATVVSATDGTIVSFNAAAVRQFGYAEEEVIGQNLR-ILMPEPYRHEHDGYLQRYMA 82 (130)
T ss_dssp HHHHHHHHHHHTSCHHHHHTTCSSEEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGG-GGSCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhCcCeEEEECCCCeEEEEcHHHHHHHCCCHHHHcCCcHH-HHCCchhHHHHHHHHHHHHh
Confidence 34567778888899999999999999999999999999999999999999999999988 78887776665555555544
Q ss_pred CCCc----cceEEEEEEeccccCCcEEEEEEEeEeeccCCCCEEEEEEEEEech
Q 037299 671 GEED----KNVEIKLRTFGAENRKKAVFVVVNACSSKDYTNNIVGVCFVGQDVT 720 (1111)
Q Consensus 671 ~~~~----~~~e~~l~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DIT 720 (1111)
.+.. ...++.. .++||+.+|+.++..|+.+. ...+++++++|||
T Consensus 83 ~~~~~~~~~~~e~~~----~~kdG~~~~~~~~~~~~~~~--~~~~~~~~~~DIT 130 (130)
T 1d06_A 83 TGEKRIIGIDRVVSG----QRKDGSTFPMKLAVGEMRSG--GERFFTGFIRDLT 130 (130)
T ss_dssp HCCCSSTTSCEEEEE----ECTTSCEEEEEEEEEEEEET--TEEEEEEEEEECC
T ss_pred cCCccccCCeeEEEE----EeCCCCEEEEEEEEEEEEEC--CeEEEEEEEEECc
Confidence 3322 1223333 47899999999999999763 3456889999998
No 56
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=99.48 E-value=1.4e-13 Score=129.75 Aligned_cols=112 Identities=10% Similarity=0.004 Sum_probs=97.3
Q ss_pred cCCcEEEEc-CCccEEeecHHHHHHcCCChhhhcCCcccccccchhhHHHHHHHHHHHHcCCCccceEEEEEEeccccCC
Q 037299 612 ATAPIFAVD-VHGCVNGWNAKVAELTGLSVEEAMGKSLVHDLVYKEYEEIVDNLLHHALKGEEDKNVEIKLRTFGAENRK 690 (1111)
Q Consensus 612 ~~~~I~~~D-~dG~I~~~N~a~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~l~~~~~~~dG 690 (1111)
+++++|.+| .+|+++|+|+++++++||++++++|...+..++||++++.+...+..++.++.....++++. +++|
T Consensus 2 a~~giw~~d~~~~~~~~~n~~~~~l~G~~~~e~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~e~r~~----~~dG 77 (115)
T 3h9w_A 2 TKAIPWKINWQTMAFEYIGPQIEALLGWPQGSWKSVEDWATRMHPEDQEWVVNFCVKQSECGVDHEADYRAL----HRDG 77 (115)
T ss_dssp -CCEEEEEETTTTEEEEECTHHHHHHCSCGGGCCBHHHHHHSBCHHHHHHHHHHHHHHHHTTCCEEEEEEEE----CTTS
T ss_pred cceEEEEEEcCCCcEEEEChhHHHHhCCChHHccCHHHHHHhcCHHHHHHHHHHHHHHHhcCCcccEEEEEE----cCCC
Confidence 578999999 68999999999999999999999995344478999999999999999998887666666665 7899
Q ss_pred cEEEEEEEeEeeccCCCCEEEEEEEEEechhHHHHHH
Q 037299 691 KAVFVVVNACSSKDYTNNIVGVCFVGQDVTDQKLVMD 727 (1111)
Q Consensus 691 ~~~~v~v~~~pi~d~~G~v~gvv~v~~DITerK~ae~ 727 (1111)
+.+|+..++.|++|.+|++.+++++.+|||++|.+|+
T Consensus 78 ~~~w~~~~~~~~~d~~G~~~~~~G~~~Dit~~k~~~~ 114 (115)
T 3h9w_A 78 HYVWIRDVVHVVRDDSGEVEALIGFMFDISLEHHHHH 114 (115)
T ss_dssp CEEEEEEEEEEEECTTSCEEEEEEEEEECGGGGC---
T ss_pred CEEEEEEEEEEEECCCCCEEEEEEEEeccCccccccc
Confidence 9999999999999999999999999999999999875
No 57
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida}
Probab=99.46 E-value=3e-13 Score=135.31 Aligned_cols=132 Identities=14% Similarity=0.108 Sum_probs=109.6
Q ss_pred HHHHHHHHHhcCCcEEEEcCCc---cEEeecHHHHHHcCCChhhhcCCcccccccchhhHHHHHHHHHHHHcCCCccceE
Q 037299 602 AREMVRLIETATAPIFAVDVHG---CVNGWNAKVAELTGLSVEEAMGKSLVHDLVYKEYEEIVDNLLHHALKGEEDKNVE 678 (1111)
Q Consensus 602 ~~~l~~lie~~~~~I~~~D~dG---~I~~~N~a~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e 678 (1111)
++.++.++++++++|+++|.+| +|+++|+++++++|++.++++|+++. .++++.........+..++..+.....+
T Consensus 24 ~~~~~~i~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (162)
T 3sw1_A 24 AQLLQSMVDASNDGIVVAEKEGDDTILIYVNAAFEYLTGYSRDEILYQDCR-FLQGDDRDQLGRARIRKAMAEGRPCREV 102 (162)
T ss_dssp HHHHHHHHHTCSSEEEEEEEETTEEEEEEECHHHHHHHTCCHHHHTTSBGG-GGTTTCCCCHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHhhccCcEEEEeCCCCccEEEEECHHHHHHHCCCHHHHcCCCcc-eecCCCcCHHHHHHHHHHHhcCCCCcce
Confidence 4568899999999999999999 99999999999999999999999987 7777765555555566666555554444
Q ss_pred EEEEEeccccCCcEEEEEEEeEeeccCCCCEEEEEEEEEechhHHHHHHHHHhHHHHHHH
Q 037299 679 IKLRTFGAENRKKAVFVVVNACSSKDYTNNIVGVCFVGQDVTDQKLVMDKFIHIQGDYKA 738 (1111)
Q Consensus 679 ~~l~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DITerK~ae~~L~~se~~l~~ 738 (1111)
+.+. +++|..+|+.++..|+.+.+|.+.|++++++|||++|+++++++++++.++.
T Consensus 103 ~~~~----~~~g~~~~~~~~~~~i~~~~g~~~~~~~~~~DiTe~k~~e~~l~~~~~~l~~ 158 (162)
T 3sw1_A 103 LRNY----RKDGSAFWNELSITPVKSDFDQRTYFIGIQKDVSRQVELERELAELRARPKP 158 (162)
T ss_dssp EEEE----CTTCCEEEEEEEEEEEECSSSSCEEEEEEEEECHHHHHHHHHHHHHTC----
T ss_pred EEEE----CCCCCEEEEEEEEEEeecCCCCEEEEEEEEEeCcHHHHHHHHHHHHHHHHHH
Confidence 4443 6799999999999999999999999999999999999999999988777653
No 58
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=99.46 E-value=2.3e-13 Score=129.37 Aligned_cols=114 Identities=12% Similarity=0.092 Sum_probs=80.8
Q ss_pred hcCCcEEEEcCCccEEeecHHHHHHcCCChhhhcCCcccccccchhhHHHHHHHHHHHHcCCCc----cceEEEEEEecc
Q 037299 611 TATAPIFAVDVHGCVNGWNAKVAELTGLSVEEAMGKSLVHDLVYKEYEEIVDNLLHHALKGEED----KNVEIKLRTFGA 686 (1111)
Q Consensus 611 ~~~~~I~~~D~dG~I~~~N~a~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~----~~~e~~l~~~~~ 686 (1111)
+++++|+++|.+|+|++||+++++++||+++|++|+++. .++++.+.......+......+.. ...++.. .
T Consensus 1 ~~~d~i~~~d~~g~i~~~N~a~~~l~G~~~~el~G~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 75 (119)
T 2vv6_A 1 TIPDAMIVIDGHGIIQLFSTAAERLFGWSELEAIGQNVN-ILMPEPDRSRHDSYISRYRTTSDPHIIGIGRIVTG----K 75 (119)
T ss_dssp -CCCEEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGG-GGSCTTHHHHHHHHHHHHHHHCCCSSTTTCEEEEE----E
T ss_pred CCcceEEEECCCCeEEEEhHHHHHHhCCCHHHHcCCCHH-HhCCchHHHHHHHHHHHHhcCCCcccCCCceEEEE----E
Confidence 468999999999999999999999999999999999987 777777766555555555443322 1223333 4
Q ss_pred ccCCcEEEEEEEeEeeccCCCCEEEEEEEEEechhHHHHHHHHHh
Q 037299 687 ENRKKAVFVVVNACSSKDYTNNIVGVCFVGQDVTDQKLVMDKFIH 731 (1111)
Q Consensus 687 ~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DITerK~ae~~L~~ 731 (1111)
++||..+|+.++..|+.+. ...+++++++|||++|++|++|++
T Consensus 76 ~~dG~~~~~~~~~~~~~~~--~~~~~~~~~~DITerk~~e~~l~~ 118 (119)
T 2vv6_A 76 RRDGTTFPMHLSIGEMQSG--GEPYFTGFVRDLTEHQQTQARLQE 118 (119)
T ss_dssp CTTSCEEEEEEEEEEEEET--TEEEEEEEEEECC-----------
T ss_pred eCCCCEEEEEEEEEEEEEC--CeEEEEEEEEEcHHHHHHHHHHHh
Confidence 7899999999999999764 345689999999999999998764
No 59
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=99.43 E-value=2.5e-13 Score=129.42 Aligned_cols=117 Identities=15% Similarity=0.066 Sum_probs=96.7
Q ss_pred HHHHHHHHHhCCCCCCCCccccCCCCccccchhhhHHHhCCCccccccccccccccccccccCChhhHHHHHHHHHhhhC
Q 037299 732 IQGDYKAIVHSPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGDIIGKMLVGEVFGSCCRLKGPDALTKFMIALHNAFG 811 (1111)
Q Consensus 732 se~~l~~i~~~~~~l~~~I~v~D~~g~ii~~N~a~~~l~G~~~eeliGk~l~~~v~~~~~~l~~~~~~~~~~~~l~~~~~ 811 (1111)
++++++.+++++++ +|+++|.+|+|+++|+++++++||++++++|++.... .+++........+...+.
T Consensus 3 ~~~~~~~~~~~~~~---~i~~~d~~g~i~~~N~a~~~~~G~~~~elig~~~~~l--------~~~~~~~~~~~~~~~~~~ 71 (120)
T 2gj3_A 3 LPEIFRQTVEHAPI---AISITDLKANILYANRAFRTITGYGSEEVLGKNESIL--------SNGTTPRLVYQALWGRLA 71 (120)
T ss_dssp CHHHHHHHHHHCSS---EEEEECTTCBEEEECHHHHHHHCCCTTGGGGCBGGGG--------CCTTSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCC---eEEEECCCCCEEeehHHHHHHHCcCHHHHcCCCHHHc--------CCCCCCHHHHHHHHHHHH
Confidence 45678899999877 8999999999999999999999999999999976322 122222233344445555
Q ss_pred CCCcceeeeeeecCCCCEEEEEEEEeeeecCCCCEEEEEeeeecccHH
Q 037299 812 GQDTEKFPFPLFDRNGKYVQALLTANKRVNMEGQIVGAFCFLQIASPE 859 (1111)
Q Consensus 812 ~~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~~~~DITer 859 (1111)
.+..+..++..++++|+.+|+.++..|+.|.+|.+.+++++++|||++
T Consensus 72 ~~~~~~~e~~~~~~dG~~~~~~~~~~pi~~~~g~~~~~v~~~~DITe~ 119 (120)
T 2gj3_A 72 QKKPWSGVLVNRRKDKTLYLAELTVAPVLNEAGETIYYLGMHRDTSEL 119 (120)
T ss_dssp TTCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCSC
T ss_pred cCCCEEEEEEEEcCCCCEEEEEEEEEEEECCCCCEEEEEEEeccCccc
Confidence 666788889999999999999999999999999999999999999975
No 60
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=99.43 E-value=1.5e-12 Score=145.63 Aligned_cols=225 Identities=11% Similarity=0.005 Sum_probs=154.5
Q ss_pred HHHhcCCcEEEEcCC-ccEEeecHHHHHHcCCChhhhcCCcccccccchhhHHHHHHHHHHH--------------HcCC
Q 037299 608 LIETATAPIFAVDVH-GCVNGWNAKVAELTGLSVEEAMGKSLVHDLVYKEYEEIVDNLLHHA--------------LKGE 672 (1111)
Q Consensus 608 lie~~~~~I~~~D~d-G~I~~~N~a~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~--------------l~~~ 672 (1111)
+++++..-+++++.+ |+|+|+|+.+..++||++++++|+++. +++||+|+..+...+... ....
T Consensus 31 ~L~aldgF~~vvs~~~G~i~yvS~~~~~~Lg~~~~el~g~s~~-d~ihp~D~~~f~~ql~~~~lP~~~~~~~~~~~~~~~ 109 (317)
T 4dj3_A 31 TSKNTDTFAAVFSFLSGRLVHISEQAALILNSKRGFLKSVHFV-DLLAPQDVRAFYAHTAPTQLPFWNNWTQRASQYECA 109 (317)
T ss_dssp HTSCTTEEEEEEETTTCBEEEECTTHHHHTTCCHHHHHTSBGG-GGBCGGGHHHHHHHTCTTTCCCCC----------CC
T ss_pred HHhccCCEEEEEEcCCcEEEEECCHHHHHcCCCHHHHcCCchh-hhcChhhHHHHHHhhcccCCCCcCCCcccccccCCC
Confidence 577777788899986 999999999999999999999999999 999999999887754110 0112
Q ss_pred CccceEEEEEEeccccCCcEEEEEEEeEe--ecc---CCCCEEEEEEEEEechhHHHHHHHHHhHHHHHHHHHhCCCCCC
Q 037299 673 EDKNVEIKLRTFGAENRKKAVFVVVNACS--SKD---YTNNIVGVCFVGQDVTDQKLVMDKFIHIQGDYKAIVHSPNPLI 747 (1111)
Q Consensus 673 ~~~~~e~~l~~~~~~~dG~~~~v~v~~~p--i~d---~~G~v~gvv~v~~DITerK~ae~~L~~se~~l~~i~~~~~~l~ 747 (1111)
....+-++++.....++.++..+.+.+.. ... .++....++.+.+=.+.-+..+.. +.. ..
T Consensus 110 ~~rsF~CRmr~g~~~~~~~y~~~~~~g~l~~~~~~~~~~~~~~clv~v~~~~~~~~~~~~~-----------~~~-~~-- 175 (317)
T 4dj3_A 110 PAKPFFCRICGGGDREKRHYSPFRILPYLVHVHSSAQPEPEPCCLTLVEKIHSGYEAPRIP-----------VDK-RI-- 175 (317)
T ss_dssp CCCCEEEEECCCCCSSSCCCEEEEEEEEEEECCCCSSSCSCEEEEEEEEECCCTTSSSCCC-----------GGG-CE--
T ss_pred CCceEEEEEeCCCCCCCCceEEEEEEeEEEeccCCCCCCCCceEEEEEEecCCCcCCCCcc-----------cCC-Cc--
Confidence 22334455553211222234444444322 111 122333344443322211111000 011 01
Q ss_pred CCccccCCCCccccchhhhHHHhCCCccccccccccccccccccccCChhhHHHHHHHHHhhhCCCCc---ceeeeeeec
Q 037299 748 PPIFASDENTCCSEWNTAMEKLTGWSRGDIIGKMLVGEVFGSCCRLKGPDALTKFMIALHNAFGGQDT---EKFPFPLFD 824 (1111)
Q Consensus 748 ~~I~v~D~~g~ii~~N~a~~~l~G~~~eeliGk~l~~~v~~~~~~l~~~~~~~~~~~~l~~~~~~~~~---~~~e~~~~~ 824 (1111)
-+...+.+|+++++|+++..++||.++|++|+.. ..+.||+|...+...+.+++.++.. ...++++++
T Consensus 176 -Fitrh~~dG~~~yvs~~~~~lLGY~peELig~s~--------~~~vHPdD~~~~~~~~~~~l~~~~~~~f~s~~yR~~~ 246 (317)
T 4dj3_A 176 -FTTTHTPGCVFLEVDERAVPLLGYLPQDLIGTSI--------LTYLHPEDRPLMVAIHQKVLKYAGHPPFEHSPVRFCT 246 (317)
T ss_dssp -EEEEECTTSBEEEECTTHHHHHSCCHHHHTTSBG--------GGGBCTTTTTHHHHHHHHHHHTTTSCCEECCCEEEEC
T ss_pred -eEEEecCCCeEEEEChHHhhhcCcChHHHcCCCH--------HHeECHHHHHHHHHHHHHHHHcCCCccccceEEEEEc
Confidence 3666789999999999999999999999999975 4667899999998888888876554 468999999
Q ss_pred CCCCEEEEEEEEeeeecCC-CCEEEEEeeeecc
Q 037299 825 RNGKYVQALLTANKRVNME-GQIVGAFCFLQIA 856 (1111)
Q Consensus 825 ~dG~~~~v~~~~~pi~d~~-G~v~g~v~~~~DI 856 (1111)
+||.++|+.....+++|.. +++..+++.-+.+
T Consensus 247 kdG~~vwvet~~~~~~np~s~~~e~II~~h~v~ 279 (317)
T 4dj3_A 247 QNGEYVILDSSWSSFVNPWSRKVSFIIGRHKVR 279 (317)
T ss_dssp TTSCEEEEEEEEEEEECSSSCCEEEEEEEEEEC
T ss_pred cCCCEEEEEEEEEEEECCCCCcccEEEEEEEec
Confidence 9999999999999999874 6666777766533
No 61
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Probab=99.42 E-value=4.3e-13 Score=127.51 Aligned_cols=115 Identities=11% Similarity=0.136 Sum_probs=87.8
Q ss_pred HHHHHHHhcCCcEEEEcCCccEEeecHHHHHHcCCChhhhcCCcccccccchhhH-HHHHHHHHHHHcCCCccceEEEEE
Q 037299 604 EMVRLIETATAPIFAVDVHGCVNGWNAKVAELTGLSVEEAMGKSLVHDLVYKEYE-EIVDNLLHHALKGEEDKNVEIKLR 682 (1111)
Q Consensus 604 ~l~~lie~~~~~I~~~D~dG~I~~~N~a~~~l~G~~~eeliG~~~~~~l~~~~~~-~~~~~~l~~~l~~~~~~~~e~~l~ 682 (1111)
.|+.++++++++|+ +|.+|+|+++|+++++++||++++++|+++. .+++++.. ..+...+...+.++.....++.+.
T Consensus 4 ~~~~~~~~~~~~i~-~~~~g~i~~~N~a~~~l~G~~~~el~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 81 (120)
T 3mqq_A 4 DYKTAFHLAPIGLV-LSRDRVIEDCNDELAAIFRCARADLIGRSFE-VLYPSSDEFERIGERISPVMIAHGSYADDRIMK 81 (120)
T ss_dssp CHHHHHHHCSSEEE-EEETTEEEEECHHHHHHTTSCHHHHTTCBGG-GGSSSHHHHHHHHHHHHHHHHHHSCEEEEEEEE
T ss_pred hHHHHHhcCCceEE-EecCCEEHHHHHHHHHHhCcCHHHhCCCchh-hccCChhhHHHHHHHHHHHHhcCCcceEEEEEE
Confidence 47889999999996 5889999999999999999999999999987 66655332 444444555554444444444443
Q ss_pred EeccccCCcEEEEEEEeEeeccCCCCEEEEEEEEEechhHHHH
Q 037299 683 TFGAENRKKAVFVVVNACSSKDYTNNIVGVCFVGQDVTDQKLV 725 (1111)
Q Consensus 683 ~~~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DITerK~a 725 (1111)
+++|..+|+.++..|+ +.+|...+++++++|||++|++
T Consensus 82 ----~~dG~~~~~~~~~~~~-~~~~~~~~~v~~~~DITerk~~ 119 (120)
T 3mqq_A 82 ----RAGGELFWCHVTGRAL-DRTAPLAAGVWTFEDLSATRRV 119 (120)
T ss_dssp ----CTTSCEEEEEEEEEES-STTSTTSSEEEEEEESCC----
T ss_pred ----eCCCCEEEEEEEEEEC-CCCCCceeEEEEEEcccHhhcc
Confidence 7899999999999999 5666677899999999999986
No 62
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}
Probab=99.42 E-value=1.1e-12 Score=122.43 Aligned_cols=119 Identities=18% Similarity=0.256 Sum_probs=102.1
Q ss_pred HHHHHHHHHHhcCCcEEEEcCCccEEeecHHHHHHcCCChhhhcCCcccccccchhhHHHHHHHHHHHHcCCCccceEEE
Q 037299 601 VAREMVRLIETATAPIFAVDVHGCVNGWNAKVAELTGLSVEEAMGKSLVHDLVYKEYEEIVDNLLHHALKGEEDKNVEIK 680 (1111)
Q Consensus 601 ~~~~l~~lie~~~~~I~~~D~dG~I~~~N~a~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~ 680 (1111)
.+++++.++++++++++++|.+|+|+++|+++++++|++.++++|+++. .+.+++........+...+.++.....++.
T Consensus 5 ~~~~~~~~~~~~~~~i~~~d~~~~i~~~N~~~~~~~g~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (124)
T 3lyx_A 5 ILKQRAKAFDYVFDAIVVTDLQGFIIDWNKGSETLYGYSKEQAIGQPVN-MLHVPGDTEHITSEVISAVENQGKWTGEIR 83 (124)
T ss_dssp HHHHHHHGGGTCSSEEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBGG-GGSCTTTHHHHHHHHHHHHHHTSCEEEEEE
T ss_pred HHHHHHHHHhhcCceEEEECCCCcEeehhhHHHHHhCCCHHHHcCCCHH-HhcCcchhhHHHHHHHHHHHcCCcccceEE
Confidence 3567889999999999999999999999999999999999999999998 777777777777777777766665544554
Q ss_pred EEEeccccCCcEEEEEEEeEeeccCCCCEEEEEEEEEechhHHH
Q 037299 681 LRTFGAENRKKAVFVVVNACSSKDYTNNIVGVCFVGQDVTDQKL 724 (1111)
Q Consensus 681 l~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DITerK~ 724 (1111)
+. .++|..+|+.++..|+.+.+|.+.|++++++|||++|+
T Consensus 84 ~~----~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~~~ 123 (124)
T 3lyx_A 84 ML----HKDGHIGWIESMCVPIYGENYQMVGALGINRDITKRKK 123 (124)
T ss_dssp EE----CTTSCEEEEEEEEEEEECSTTCEEEEEEEEEECSCC--
T ss_pred EE----ccCCCEEEEEEEEEEEECCCCCEEEEEEEEecchhhhc
Confidence 44 67899999999999999999999999999999999886
No 63
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=99.42 E-value=1.9e-12 Score=145.17 Aligned_cols=225 Identities=9% Similarity=0.037 Sum_probs=153.3
Q ss_pred HHHhcCCcEEEEcCC-ccEEeecHHHHHHcCCChhhhcCCcccccccchhhHHHHHHHHHHH---------------HcC
Q 037299 608 LIETATAPIFAVDVH-GCVNGWNAKVAELTGLSVEEAMGKSLVHDLVYKEYEEIVDNLLHHA---------------LKG 671 (1111)
Q Consensus 608 lie~~~~~I~~~D~d-G~I~~~N~a~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~---------------l~~ 671 (1111)
+++++..-++++..+ |+|+|+++.+..++||++++++|+++. +++||+|.+.+.+.+... ...
T Consensus 31 lLqaldGF~~vvs~~~G~i~yvS~sv~~~Lg~~~~~l~g~s~~-d~iHp~D~~~f~~qL~~~~lp~~~~~~~~~~~~~~~ 109 (320)
T 4dj2_A 31 TLRNQDTFSVAVSFLTGRIVYISEQAGVLLRCKRDVFRGARFS-ELLAPQDVGVFYGSTTPSRLPTWGTGTSAGSGLKDF 109 (320)
T ss_dssp TTSCSSEEEEEEETTTCBEEEECTHHHHHHTSCSTTTTTSBGG-GGBCHHHHHHHHHHCCTTTCCBTTC-----------
T ss_pred HHhccCCEEEEEECCCceEEEECcHHHHHhCcCHHHHcCCcHH-HhcCHHHHHHHHHhhcccCCCCcccCcccccccccC
Confidence 477777778888885 999999999999999999999999999 999999999887765310 011
Q ss_pred CCccceEEEEEEeccccCC--cEEEEEEE--eEeeccCCCC--EEEEEEEEEechhH-HHHHHHHHhHHHHHHHHHhCCC
Q 037299 672 EEDKNVEIKLRTFGAENRK--KAVFVVVN--ACSSKDYTNN--IVGVCFVGQDVTDQ-KLVMDKFIHIQGDYKAIVHSPN 744 (1111)
Q Consensus 672 ~~~~~~e~~l~~~~~~~dG--~~~~v~v~--~~pi~d~~G~--v~gvv~v~~DITer-K~ae~~L~~se~~l~~i~~~~~ 744 (1111)
+....+-++++... .++. +..++.+. ...+.+.+|. ....+..+.-+... +..+.. .+ ..
T Consensus 110 ~~~rsF~CRmr~~l-~k~~~~~Y~~~~~~g~lk~~~~~~g~~~~~~~li~a~~~~s~~~~~~i~-----------~~-~~ 176 (320)
T 4dj2_A 110 TQEKSVFCRIRGGP-DRDPGPRYQPFRLTPYVTKIRVSDGAPAQPCCLLIAERIHSGYEAPRIP-----------PD-KR 176 (320)
T ss_dssp --CCCEEEEECCC--------CCEEEEEEEEEEEECC---CCCEEEEEEEEEECCCSSSSSCCC-----------GG-GC
T ss_pred CCceeEEEEEEEec-cCCCcccEEEEEEEEEecccccCCCCcccceeeeeeeeccCcccccccc-----------CC-Cc
Confidence 12233344544321 1222 23333333 2334555565 33333333333111 100000 00 01
Q ss_pred CCCCCccccCCCCccccchhhhHHHhCCCccccccccccccccccccccCChhhHHHHHHHHHhhhCCC-Ccc-eeeeee
Q 037299 745 PLIPPIFASDENTCCSEWNTAMEKLTGWSRGDIIGKMLVGEVFGSCCRLKGPDALTKFMIALHNAFGGQ-DTE-KFPFPL 822 (1111)
Q Consensus 745 ~l~~~I~v~D~~g~ii~~N~a~~~l~G~~~eeliGk~l~~~v~~~~~~l~~~~~~~~~~~~l~~~~~~~-~~~-~~e~~~ 822 (1111)
.-+...+.+|+++++|+++..++||.++|++|+.. ..+.||+|...+...+.+++.++ ... ..++++
T Consensus 177 ---~Fitrh~~dG~~~yvd~~~~~lLGY~peELig~s~--------~~~vHPdD~~~~~~~~~~~l~~~g~~~~~~~yR~ 245 (320)
T 4dj2_A 177 ---IFTTRHTPSCLFQDVDERAAPLLGYLPQDLLGAPV--------LLFLHPEDRPLMLAIHKKILQLAGQPFDHSPIRF 245 (320)
T ss_dssp ---EEEEEECTTCBEEEECTTHHHHHSCCHHHHTTSBG--------GGGBCGGGHHHHHHHHHHHTTSSSCCEECCCEEE
T ss_pred ---eEEEEecCCceEEEcCcceeccCCcChHHHcCCcH--------HHhCCHHHHHHHHHHHHHHHhcCCCcccceEEEE
Confidence 13666789999999999999999999999999975 56778999999999999988853 444 479999
Q ss_pred ecCCCCEEEEEEEEeeeecC-CCCEEEEEeeeeccc
Q 037299 823 FDRNGKYVQALLTANKRVNM-EGQIVGAFCFLQIAS 857 (1111)
Q Consensus 823 ~~~dG~~~~v~~~~~pi~d~-~G~v~g~v~~~~DIT 857 (1111)
+++||.++|+......+.|. .+++..+++.-+.++
T Consensus 246 ~~kdG~~vwvet~~~~~~np~s~~~e~II~~h~v~~ 281 (320)
T 4dj2_A 246 CARNGEYVTMDTSWAGFVHPWSRKVAFVLGRHKVRT 281 (320)
T ss_dssp ECSSSCEEEEECEEEEEECTTTCSEEEEEEEEEESS
T ss_pred EccCCCEEEEEEEEEEEECCCCCCccEEEEEEEEcc
Confidence 99999999999999999886 577777887766555
No 64
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=99.42 E-value=8.2e-13 Score=122.78 Aligned_cols=113 Identities=18% Similarity=0.139 Sum_probs=94.8
Q ss_pred HHHHHHHHHhcCCcEEEEcCCccEEeecHHHHHHcCCChhhhcCCcccccccchhhHHHHHHHHHHHHcCCCccceEEEE
Q 037299 602 AREMVRLIETATAPIFAVDVHGCVNGWNAKVAELTGLSVEEAMGKSLVHDLVYKEYEEIVDNLLHHALKGEEDKNVEIKL 681 (1111)
Q Consensus 602 ~~~l~~lie~~~~~I~~~D~dG~I~~~N~a~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~l 681 (1111)
+++++.++++++++++++|.+|+++++|+++++++|+++++++|+++. +++ |++.+.+...+..++.++.....+..+
T Consensus 2 e~~~~~~~~~~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (114)
T 3luq_A 2 DERLRLFTEHAPAALAMFDREMRYLAVSRRWREDYGLGDGDILGMSHY-DIF-PEIGEEWKSVHRRGLAGEVIRVEEDCF 79 (114)
T ss_dssp CHHHHHHHHTCSSEEEEEETTCBEEEECHHHHHHTTCCSSCCTTCBHH-HHC-TTCCHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred hHHHHHHHhcCCceEEEEcCCcEEEEECHHHHHHHCCCHHHHcCCcHH-HHC-CccHHHHHHHHHHHhcCCcceeeeeEE
Confidence 357889999999999999999999999999999999999999999998 666 555566777778888766543333233
Q ss_pred EEeccccCCcEEEEEEEeEeeccCCCCEEEEEEEEEech
Q 037299 682 RTFGAENRKKAVFVVVNACSSKDYTNNIVGVCFVGQDVT 720 (1111)
Q Consensus 682 ~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DIT 720 (1111)
.+++|..+|+.++..|+++.+|.+.|++++++|||
T Consensus 80 ----~~~~g~~~~~~~~~~p~~~~~g~~~~~~~~~~DIT 114 (114)
T 3luq_A 80 ----VRADGRTQWLRWEVRPWYEGEGRVGGVVIFTEDIT 114 (114)
T ss_dssp ----EC--CCEEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred ----EcCCCcEEEEEEEEEEeECCCCCEEEEEEEEeeCC
Confidence 36789999999999999999999999999999998
No 65
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=99.42 E-value=3.2e-13 Score=128.58 Aligned_cols=115 Identities=11% Similarity=0.078 Sum_probs=98.0
Q ss_pred HHHHHhCCCCCCCCccccCCCCccccchhhhHHHhCCCccccccccccccccccccccCChhhHHHHHHHHHhhhC-CCC
Q 037299 736 YKAIVHSPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGDIIGKMLVGEVFGSCCRLKGPDALTKFMIALHNAFG-GQD 814 (1111)
Q Consensus 736 l~~i~~~~~~l~~~I~v~D~~g~ii~~N~a~~~l~G~~~eeliGk~l~~~v~~~~~~l~~~~~~~~~~~~l~~~~~-~~~ 814 (1111)
+..+++++++ .|+..|.+|+++++|+++++++||++++++|+++ ..+.||++...+...+.+++. ++.
T Consensus 4 ~~ll~e~~~d---~i~~~d~~g~i~~~n~~~~~~~G~~~~el~g~~~--------~~~i~p~d~~~~~~~~~~~~~~~~~ 72 (121)
T 3f1p_B 4 KGLNVCQPTR---FISRHNIEGIFTFVDHRCVATVGYQPQELLGKNI--------VEFCHPEDQQLLRDSFQQVVKLKGQ 72 (121)
T ss_dssp ----CCCCCE---EEEEECTTSBEEEECTTHHHHHSCCGGGTTTSBG--------GGGBCTTTHHHHHHHHHHHTTSTTC
T ss_pred ccceecCCCc---eEEEECCCceEEEECcchhhhhCCChHHHcCCCH--------HHeECHHHHHHHHHHHHHHHhcCCC
Confidence 3456677766 7999999999999999999999999999999875 455679999999998888884 556
Q ss_pred cceeeeeeecCCCCEEEEEEEEeeeecC-CCCEEEEEeeeecccHHHH
Q 037299 815 TEKFPFPLFDRNGKYVQALLTANKRVNM-EGQIVGAFCFLQIASPELQ 861 (1111)
Q Consensus 815 ~~~~e~~~~~~dG~~~~v~~~~~pi~d~-~G~v~g~v~~~~DITer~~ 861 (1111)
....++++++++|+++|+..+..|+.|. +|.+.+++++.+|||++++
T Consensus 73 ~~~~e~r~~~~dG~~~w~~~~~~~~~~~~~g~~~~iv~~~~DIT~~kq 120 (121)
T 3f1p_B 73 VLSVMFRFRSKNQEWLWMRTSSFTFQNPYSDEIEYIICTNTNVKNSSQ 120 (121)
T ss_dssp CEEEEEEEECTTSCEEEEEEEEEEECCTTCCCCCEEEEEEEECCCC--
T ss_pred cccEEEEEEecCCCEEEEEEEEEEEECCCCCceeEEEEEeEEcccccC
Confidence 7889999999999999999999999998 7999999999999998765
No 66
>4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A*
Probab=99.41 E-value=1.3e-12 Score=121.54 Aligned_cols=111 Identities=16% Similarity=0.104 Sum_probs=93.6
Q ss_pred HHHhcCCcEEEEcC---CccEEeecHHHHHHcCCChhhhcCCcccccccchhhHHHHHHHHHHHHcCCCccceEEEEEEe
Q 037299 608 LIETATAPIFAVDV---HGCVNGWNAKVAELTGLSVEEAMGKSLVHDLVYKEYEEIVDNLLHHALKGEEDKNVEIKLRTF 684 (1111)
Q Consensus 608 lie~~~~~I~~~D~---dG~I~~~N~a~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~l~~~ 684 (1111)
.+++++++++++|. +|+|+++|+++++++|++.++++|+++. .+.+++........+...+..+.....++.+.
T Consensus 2 ~l~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 78 (115)
T 4eet_B 2 SPEFIEKNFVITDPRLPDNPIIFASDGFLELTEYSREEILGRNAR-FLQGPETDQATVQKIRDAIRDQRETTVQLINY-- 78 (115)
T ss_dssp ---CCCCSEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGG-GGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEE--
T ss_pred ccccCCCcEEEEcCCCCCCcEEEEcHHHHHHHCcCHHHHhCCCHH-HhcCCCCChHHHHHHHHHHHcCCCcceEEEEe--
Confidence 57899999999999 9999999999999999999999999987 77777766666666777776666554454443
Q ss_pred ccccCCcEEEEEEEeEeeccCCCCEEEEEEEEEechhHH
Q 037299 685 GAENRKKAVFVVVNACSSKDYTNNIVGVCFVGQDVTDQK 723 (1111)
Q Consensus 685 ~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DITerK 723 (1111)
+++|..+|+.++..|+++.+|.+.+++++++|||+++
T Consensus 79 --~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~DITer~ 115 (115)
T 4eet_B 79 --TKSGKKFWNLLHLQPVRDQKGELQYFIGVQLDGSDHV 115 (115)
T ss_dssp --CTTCCEEEEEEEEEEEECTTSCEEEEEEEEEECSCCC
T ss_pred --cCCCCEEEEEEEEEEEECCCCCEEEEEEEEEeecccC
Confidence 6899999999999999999999999999999999874
No 67
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A*
Probab=99.41 E-value=1.8e-12 Score=121.89 Aligned_cols=124 Identities=13% Similarity=0.097 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHhcCCcEEEEc---CCccEEeecHHHHHHcCCChhhhcCCcccccccchhhHHHHHHHHHHHHcCCCccc
Q 037299 600 SVAREMVRLIETATAPIFAVD---VHGCVNGWNAKVAELTGLSVEEAMGKSLVHDLVYKEYEEIVDNLLHHALKGEEDKN 676 (1111)
Q Consensus 600 ~~~~~l~~lie~~~~~I~~~D---~dG~I~~~N~a~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~ 676 (1111)
+.+++++.++++++++++++| .+|+++++|+++++++|++.++++|+++. .++++.........+...+..+....
T Consensus 3 ~~~~~~~~~~~~~~~~i~~~d~~d~~~~i~~~N~~~~~~~g~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (130)
T 2z6d_A 3 RVSQELKTALSTLQQTFVVSDATQPHCPIVYASSGFFTMTGYSSKEIVGRNCR-FLQGPDTDKNEVAKIRDCVKNGKSYC 81 (130)
T ss_dssp ----CHHHHHHHTTCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGG-GGCCTTSCHHHHHHHHHHHHTTCCEE
T ss_pred hHHHHHHHHHHhcccceeeeeccCCCCcEEEecHHHHHHhCcCHHHHcCCChh-hccCCCCCchHHHHHHHHHHcCCcce
Confidence 345678899999999999999 99999999999999999999999999987 77777665555555555665555444
Q ss_pred eEEEEEEeccccCCcEEEEEEEeEeeccCCCCEEEEEEEEEechhHHHHHHH
Q 037299 677 VEIKLRTFGAENRKKAVFVVVNACSSKDYTNNIVGVCFVGQDVTDQKLVMDK 728 (1111)
Q Consensus 677 ~e~~l~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DITerK~ae~~ 728 (1111)
.++.. .+++|..+|+.+...|+.+.+|.+.|++++++|||++|+++++
T Consensus 82 ~~~~~----~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~~~~e~e 129 (130)
T 2z6d_A 82 GRLLN----YKKDGTPFWNLLTVTPIKDDQGNTIKFIGMQVEVSKYTEGVND 129 (130)
T ss_dssp EEEEE----ECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCTTC-----
T ss_pred eEEEE----EcCCCcEEEEEEEEEEEECCCCCeeEEEEEEecchHHHHhhcc
Confidence 44433 3678999999999999999999999999999999999988764
No 68
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal trans phototropin1, nucleotide-binding; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A*
Probab=99.40 E-value=9.7e-13 Score=127.03 Aligned_cols=134 Identities=13% Similarity=0.036 Sum_probs=113.5
Q ss_pred HHHHHHhcCCcEEEEcC---CccEEeecHHHHHHcCCChhhhcCCcccccccchhhHHHHHHHHHHHHcCCCccceEEEE
Q 037299 605 MVRLIETATAPIFAVDV---HGCVNGWNAKVAELTGLSVEEAMGKSLVHDLVYKEYEEIVDNLLHHALKGEEDKNVEIKL 681 (1111)
Q Consensus 605 l~~lie~~~~~I~~~D~---dG~I~~~N~a~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~l 681 (1111)
++.++++++++++++|. +|+++++|+++++++|++.++++|+++. .++++.+.......+...+..+.....++.+
T Consensus 4 l~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (146)
T 2v0u_A 4 LATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCR-FLQGPETDRATVRKIRDAIDNQTEVTVQLIN 82 (146)
T ss_dssp CCCTGGGSSSCEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGG-GGCCTTSCHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred HHHHHhcCCCcEEEEcCCCCCceEEEEcHHHHHHHCcCHHHHcCCCHH-HhcCCcCChHHHHHHHHHHhcCCCcceEEEE
Confidence 45688999999999999 9999999999999999999999999987 7777777666666666677666654444444
Q ss_pred EEeccccCCcEEEEEEEeEeeccCCCCEEEEEEEEEechhHHHHHHHHHhHHHHHHHHHhCCC
Q 037299 682 RTFGAENRKKAVFVVVNACSSKDYTNNIVGVCFVGQDVTDQKLVMDKFIHIQGDYKAIVHSPN 744 (1111)
Q Consensus 682 ~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DITerK~ae~~L~~se~~l~~i~~~~~ 744 (1111)
. +++|..+|+.++..|+++.+|.+.|++++++|||++|+ ++++.+.+.+++.++++++
T Consensus 83 ~----~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~~~-~~~~~~~~~~~~~~~~~~~ 140 (146)
T 2v0u_A 83 Y----TKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHVR-DAAEREGVMLIKKTAENID 140 (146)
T ss_dssp E----CTTCCEEEEEEEEEEEECTTSCEEEEEEEEEEESSCCC-HHHHHHHHHHHHHHHHHHH
T ss_pred E----ecCCcEEEEEEEEEEeECCCCCEEEEEEEEeechHHHH-HHHHHHHHHHHHHHHhccH
Confidence 3 67899999999999999999999999999999999999 7777778888888876653
No 69
>3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A*
Probab=99.40 E-value=4.2e-13 Score=134.66 Aligned_cols=136 Identities=14% Similarity=0.129 Sum_probs=106.7
Q ss_pred chhHHHHHHHHHhHHHHHHHHHhCCCCCCCCccccCC---CCccccchhhhHHHhCCCccccccccccccccccccccCC
Q 037299 719 VTDQKLVMDKFIHIQGDYKAIVHSPNPLIPPIFASDE---NTCCSEWNTAMEKLTGWSRGDIIGKMLVGEVFGSCCRLKG 795 (1111)
Q Consensus 719 ITerK~ae~~L~~se~~l~~i~~~~~~l~~~I~v~D~---~g~ii~~N~a~~~l~G~~~eeliGk~l~~~v~~~~~~l~~ 795 (1111)
...+++++.++.+.+.+++.++++++. +|+++|. +|+++++|+++++++||++++++|+++.. +.+
T Consensus 20 ~~~~~~~~~~l~~~~~~~~~~~~~~~~---~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~g~~~~~--------l~~ 88 (166)
T 3ue6_A 20 TDNPSKANRILEDPDYSLVKALQMAQQ---NFVITDASLPDNPIVYASRGFLTLTGYSLDQILGRNCRF--------LQG 88 (166)
T ss_dssp -----------CCCCCHHHHHHHHTTS---CEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGG--------GCC
T ss_pred ehhhhHHHHHHHHHHHHHHHHHhcCCc---eEEEEEccCCCCcEEEECHHHHHHhCcCHHHHcCCCHhh--------eeC
Confidence 345677888899999999999999987 8999999 79999999999999999999999998522 223
Q ss_pred hhhHHHHHHHHHhhhCCCCcceeeeeeecCCCCEEEEEEEEeeeecCCCCEEEEEeeeecccHHHHHHHH
Q 037299 796 PDALTKFMIALHNAFGGQDTEKFPFPLFDRNGKYVQALLTANKRVNMEGQIVGAFCFLQIASPELQQALT 865 (1111)
Q Consensus 796 ~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~~~~DITer~~~e~e 865 (1111)
++........+...+..+..+..++.+.+++|..+|+.++..|+.+.+|.+.|++++++|||++++++..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~~~~~~~~~i~~~~g~~~~~~~~~~DITe~k~~~~~ 158 (166)
T 3ue6_A 89 PETDPRAVDKIRNAITKGVDTSVCLLNYRQDGTTFWNLFFVAGLRDSKGNIVNYVGVQSKVSEDYAKLLV 158 (166)
T ss_dssp TTSCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEECCBCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhcCCceEEEEEEEcCCCCEEEEEEEEEeeeCCCCCEEEEEEEEEechHHHHHHHH
Confidence 4444445555666666677788899999999999999999999999999999999999999998877644
No 70
>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}
Probab=99.40 E-value=2.5e-12 Score=122.12 Aligned_cols=113 Identities=18% Similarity=0.130 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEcCCccEEeecHHHHHHcCCChhhhcCCcccccccchhhHHHHHHHHHHHHcCCCccc
Q 037299 597 ELSSVAREMVRLIETATAPIFAVDVHGCVNGWNAKVAELTGLSVEEAMGKSLVHDLVYKEYEEIVDNLLHHALKGEEDKN 676 (1111)
Q Consensus 597 eL~~~~~~l~~lie~~~~~I~~~D~dG~I~~~N~a~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~ 676 (1111)
+|++++++|+.++++++++|+++|.+|+|+++|+++++++||+.+|++|+++. .+.++.........+.....+ ....
T Consensus 5 ~l~~se~~~~~l~e~~~d~i~~~d~~g~i~~vN~a~~~l~Gy~~~el~g~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~ 82 (117)
T 2r78_A 5 NLYFQSNAYRALFEHAIDGIFIMDAEGHYLDVNPAICSAIGYTRDEFLALDWG-VLSRGVDSGWAAASLARIVGG-EPLR 82 (117)
T ss_dssp SHHHHHHHHHHHHHHCSSEEEEECTTSBEEEECHHHHHHHCCCHHHHTTCBTT-TTTTCSTTSHHHHHHHHHHTT-CCEE
T ss_pred HHHHhHHHHHHHHhcCCceEEEECCCCCEEEecHHHHHHHCcCHHHHcCCCHH-HhCCccchhHHHHHHHHHHcC-CcEE
Confidence 46777889999999999999999999999999999999999999999999876 554433322233334444433 3333
Q ss_pred eEEEEEEeccccCCcEEEEEEEeEeeccCCCCEEEEEEEEEech
Q 037299 677 VEIKLRTFGAENRKKAVFVVVNACSSKDYTNNIVGVCFVGQDVT 720 (1111)
Q Consensus 677 ~e~~l~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DIT 720 (1111)
.++.+ .++||+.+|+.++..|+. +|. ++++++|||
T Consensus 83 ~e~~~----~~kdG~~~~v~~~~~~~~--~g~---~~~i~~DIT 117 (117)
T 2r78_A 83 EERTV----WTRNGDQLTVELSAHLLP--DGK---ILGIARDVS 117 (117)
T ss_dssp EEEEE----ECTTSCEEEEEEEEEECT--TSC---EEEEEEC--
T ss_pred EEEEE----EecCCCEEEEEEEEEEec--CCe---EEEEEEeCC
Confidence 34433 489999999999999986 455 678899998
No 71
>3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui}
Probab=99.39 E-value=1.5e-12 Score=122.13 Aligned_cols=121 Identities=16% Similarity=0.229 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcEEEEcCC-ccEEeecHHHHHHcCCChhhhcCCc--ccccccchhhHHHHHHHHHHHHc
Q 037299 594 GVDELSSVAREMVRLIETATAPIFAVDVH-GCVNGWNAKVAELTGLSVEEAMGKS--LVHDLVYKEYEEIVDNLLHHALK 670 (1111)
Q Consensus 594 ~~~eL~~~~~~l~~lie~~~~~I~~~D~d-G~I~~~N~a~~~l~G~~~eeliG~~--~~~~l~~~~~~~~~~~~l~~~l~ 670 (1111)
++++|++.+++++.+++++++++|++|.+ |+++++|+++++++|+++++++|++ +. .++++++...+...+.....
T Consensus 2 ~e~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~i~~~n~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 80 (125)
T 3eeh_A 2 AKQQAAKSERRVRELTEATNDILWEFTADLSEVLVINSAYEDIWGRSVAKLRENPHDFL-NGIHPEDRELMKDTMQSLMD 80 (125)
T ss_dssp --------CHHHHHHHSCCCCEEEEEETTSSCEEEECTHHHHHHSSCHHHHHHCGGGGG-GGBCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhcCCceEEEEEcCCCcEEEecHHHHHHHCCCHHHHccCcHHHH-HhcCHHHHHHHHHHHHHHHc
Confidence 34567788889999999999999999999 9999999999999999999999887 44 78899998888888877554
Q ss_pred CCCccceEEEEEEeccccCCcEEEEEEEeEeeccCCCCEEEEEEEEEech
Q 037299 671 GEEDKNVEIKLRTFGAENRKKAVFVVVNACSSKDYTNNIVGVCFVGQDVT 720 (1111)
Q Consensus 671 ~~~~~~~e~~l~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DIT 720 (1111)
+. ....++++ .+++|..+|+.++..|+.+.+|.+.+++++++|||
T Consensus 81 ~~-~~~~e~~~----~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT 125 (125)
T 3eeh_A 81 GE-SADVECRV----NATEEYQRWVWIQGEPITNDAGETVRVAGFARDIT 125 (125)
T ss_dssp TC-CEEEEEEE----CGGGTTCEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred CC-CccEEEEE----EcCCCCEEEEEEecEEEECCCCCEEEEEEEEEecC
Confidence 43 33344444 36789999999999999999999999999999998
No 72
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=99.38 E-value=2.3e-12 Score=120.82 Aligned_cols=105 Identities=14% Similarity=0.077 Sum_probs=84.0
Q ss_pred cCCcEEEEcC---CccEEeecHHHHHHcCCChhhhcCCcccccccchhhHHHHHHHHHHHHcCCCccceEEEEEEecccc
Q 037299 612 ATAPIFAVDV---HGCVNGWNAKVAELTGLSVEEAMGKSLVHDLVYKEYEEIVDNLLHHALKGEEDKNVEIKLRTFGAEN 688 (1111)
Q Consensus 612 ~~~~I~~~D~---dG~I~~~N~a~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~l~~~~~~~ 688 (1111)
++++|+++|. +|+|+++|+++++++||+.+|++|++.. .+.++.........+..++..+.....++.. .++
T Consensus 2 ~~~~i~i~d~~~~~g~i~~~N~a~~~l~Gy~~~e~~G~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~----~~k 76 (109)
T 1n9l_A 2 LRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCR-FLQGEGTDPKEVQKIRDAIKKGEACSVRLLN----YRK 76 (109)
T ss_dssp CSCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGG-GGCCTTCCHHHHHHHHHHHHHTCCEEEEEEE----ECT
T ss_pred CccEEEEEcCCCCCCeEEEEchHHHHHHCcCHHHHcCCCch-hcCCCCCCHHHHHHHHHHHHcCCcEEEEEEE----EcC
Confidence 6789999994 7999999999999999999999999976 5656554333333444455444444444444 379
Q ss_pred CCcEEEEEEEeEeeccCCCCEEEEEEEEEechh
Q 037299 689 RKKAVFVVVNACSSKDYTNNIVGVCFVGQDVTD 721 (1111)
Q Consensus 689 dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DITe 721 (1111)
+|+.+|+.++..|++|.+|++.+++++.+|||+
T Consensus 77 dG~~~~~~~~~~pi~d~~G~~~~~v~~~~DITe 109 (109)
T 1n9l_A 77 DGTPFWNLLTVTPIKTPDGRVSKFVGVQVDVTS 109 (109)
T ss_dssp TSCEEEEEEEEEEEECTTSCEEEEEEEEEECCC
T ss_pred CCCEEEEEEEEEEEECCCCCEEEEEEEEEeCCC
Confidence 999999999999999999999999999999995
No 73
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum}
Probab=99.38 E-value=7.1e-13 Score=125.26 Aligned_cols=124 Identities=10% Similarity=0.070 Sum_probs=95.7
Q ss_pred HHhHHHHHHHHHhCCCCCCCCccccCCCCccccchhhhHHHhCCCccccccccccccccccccccCChhhHHHHHHHHHh
Q 037299 729 FIHIQGDYKAIVHSPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGDIIGKMLVGEVFGSCCRLKGPDALTKFMIALHN 808 (1111)
Q Consensus 729 L~~se~~l~~i~~~~~~l~~~I~v~D~~g~ii~~N~a~~~l~G~~~eeliGk~l~~~v~~~~~~l~~~~~~~~~~~~l~~ 808 (1111)
|++++++|+.++++++. ++|.+|.+++++++|+++++++|++++++.|... .+..+.++++...+...+..
T Consensus 2 l~~~~~~l~~~~~~~~~---~i~~~d~~~~~~~~n~~~~~~~G~~~~~~~~~~~------~~~~~~~~~d~~~~~~~~~~ 72 (125)
T 3nja_A 2 NAMAEKLLHTAESDAGI---GSWVLHMESGRLEWSQAVHDIFGTDSATFDATED------AYFQRVHPDDRARVRRELDR 72 (125)
T ss_dssp ---------------CC---EEEEEETTTTEEEECHHHHHHHTCCTTTCCCBHH------HHHHHBCTTTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCe---eEEEEEcCCCcEEECHHHHHHhCCCcccccccHH------HHHhhcChhHHHHHHHHHHH
Confidence 56778899999999877 8999999999999999999999999999988321 23456678899989888988
Q ss_pred hhCCCCcceeeeeeecCCCCEEEEEEEEeeeecCCCCEEEEEeeeecccHHHH
Q 037299 809 AFGGQDTEKFPFPLFDRNGKYVQALLTANKRVNMEGQIVGAFCFLQIASPELQ 861 (1111)
Q Consensus 809 ~~~~~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~~~~DITer~~ 861 (1111)
++.++.....++++.+++|+.+|+.++..|+.+.+|.+.+++++++|||++++
T Consensus 73 ~~~~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~g~~~DITe~k~ 125 (125)
T 3nja_A 73 HVLGDRPFDVEYRIVRPDGQVRELLERNHIQRQASGQVDHLWGTVIDMTEHKQ 125 (125)
T ss_dssp HHHSCCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCC---
T ss_pred HHhcCCCceEEEEEECCCCCEEEEEEeeEEEECCCCCEEEEEEEEEecccccC
Confidence 88888888999999999999999999999999999999999999999998764
No 74
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=99.38 E-value=1e-12 Score=123.26 Aligned_cols=116 Identities=18% Similarity=0.148 Sum_probs=103.5
Q ss_pred HHHHHHHHHHhcCCcEEEEcCCccEEeecHHHHHHcCCChhhhcCCcc-cccccchhhHHHHHHHHHHHHcCCCccceEE
Q 037299 601 VAREMVRLIETATAPIFAVDVHGCVNGWNAKVAELTGLSVEEAMGKSL-VHDLVYKEYEEIVDNLLHHALKGEEDKNVEI 679 (1111)
Q Consensus 601 ~~~~l~~lie~~~~~I~~~D~dG~I~~~N~a~~~l~G~~~eeliG~~~-~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~ 679 (1111)
++++|+.+++++++++|.+|.+|.++++|+++++++||++++++|... +.++++|++.+.+...+..++.++.....++
T Consensus 2 s~~~~~~l~~~~~~~i~~~d~~~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~i~p~d~~~~~~~~~~~~~~~~~~~~e~ 81 (118)
T 3icy_A 2 NAEELQALVDNIPAAIYHLDVSGQATIRFRPPAFLKTLVSEHAGTTRLNTLSMIHHDDRHMLSNAYSKLREAKHSLTLVY 81 (118)
T ss_dssp HHHHHHHHHTTCCCCCEEECTTSCEEECCCCCGGGGGGEEEETTEEEEGGGGGBCGGGHHHHHHHHHHHHHSCCEEEEEE
T ss_pred cHHHHHHHHhcCCceEEEEEcCCCceEEechhHhhcCCCHHHccCChhHHHHHcCHHHHHHHHHHHHHHHhcCCCceEEE
Confidence 357899999999999999999999999999999999999999988754 2278999999999999999888777655566
Q ss_pred EEEEeccccCCcEEEEEEEeEeeccCCCCEEEEEEEEEech
Q 037299 680 KLRTFGAENRKKAVFVVVNACSSKDYTNNIVGVCFVGQDVT 720 (1111)
Q Consensus 680 ~l~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DIT 720 (1111)
++. +++|+.+|+...+.|+++.+|.+.+++++++|||
T Consensus 82 r~~----~~~g~~~w~~~~~~~~~~~~g~~~~~~g~~~DIT 118 (118)
T 3icy_A 82 RIV----TPEGKLHWIEDHMRSSFSDDGLFSGIDGILCEVT 118 (118)
T ss_dssp EEE----CTTCCEEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred EEE----CCCCCEEEEEEEEEEEECCCCCEEEEEEEEEecC
Confidence 554 7899999999999999999999999999999998
No 75
>4hia_A LOV protein; PAS, HTH, signaling protein; HET: FMN; 1.95A {Rhodobacter sphaeroides} PDB: 4hnb_A* 4hj4_A* 4hj6_A* 4hj3_A*
Probab=99.37 E-value=1.3e-12 Score=133.12 Aligned_cols=123 Identities=11% Similarity=0.003 Sum_probs=104.7
Q ss_pred HHHHHHHHHhCCCCCCCCccccCCC---CccccchhhhHHHhCCCccccccccccccccccccccCChhhHHHHHHHHHh
Q 037299 732 IQGDYKAIVHSPNPLIPPIFASDEN---TCCSEWNTAMEKLTGWSRGDIIGKMLVGEVFGSCCRLKGPDALTKFMIALHN 808 (1111)
Q Consensus 732 se~~l~~i~~~~~~l~~~I~v~D~~---g~ii~~N~a~~~l~G~~~eeliGk~l~~~v~~~~~~l~~~~~~~~~~~~l~~ 808 (1111)
..++++.+++++++ +|+++|.+ |+|+++|+++++++||++++++|++... +.++++.......+..
T Consensus 5 ~~~~~~~~~~~~~~---~i~~~d~~~~~g~i~~~N~a~~~~~G~~~~e~~g~~~~~--------~~~~~~~~~~~~~~~~ 73 (176)
T 4hia_A 5 QFEKIRAVFDRSGV---ALTLVDMSLPEQPVVLANPPFLRMTGYTEGQILGFNCRF--------LQRGDENAQARADIRD 73 (176)
T ss_dssp HHHHHHHHHHHCSS---CCEEEETTSTTCCEEEECHHHHHHHTCCHHHHTTSCGGG--------GCCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCC---cEEEEecCCCCCcEEEECHHHHHHHCcCHHHHcCCCcce--------eeCCCCCHHHHHHHHH
Confidence 34578889999877 89999999 9999999999999999999999997532 2234455555566666
Q ss_pred hhCCCCcceeeeeeecCCCCEEEEEEEEeeeecCCCCEEEEEeeeecccHHHHHHHH
Q 037299 809 AFGGQDTEKFPFPLFDRNGKYVQALLTANKRVNMEGQIVGAFCFLQIASPELQQALT 865 (1111)
Q Consensus 809 ~~~~~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~~~~DITer~~~e~e 865 (1111)
.+..+.....++.+.+++|+.+|+.++..|+.+.+|.+.+++++++|||++++.+.+
T Consensus 74 ~~~~~~~~~~e~~~~~~dG~~~~~~~~~~pi~~~~g~~~~~~~~~~DITe~k~~e~~ 130 (176)
T 4hia_A 74 ALKLGRELQVVLRNYRANDEPFDNLLFLHPVGGRPDAPDYFLGSQFELGRSGNSEEA 130 (176)
T ss_dssp HHHHTCCEEEEEEEECTTCCEEEEEEEEEEESSBTTBCSEEEEEEEEESSSGGGHHH
T ss_pred HHHcCCceEEEEEEEcCCCCEEEEEEEEEEeeCCCCCeEEEEEEEEECcHhhHHHHH
Confidence 676777788899999999999999999999999999999999999999999888765
No 76
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=99.37 E-value=2.4e-12 Score=124.80 Aligned_cols=121 Identities=9% Similarity=0.075 Sum_probs=92.4
Q ss_pred HHHhCCCCCCCCccccCCCC---ccccchhhhHHHhCCCccccccccccccccccccccCChhhHHHHHHHHHhhhCCCC
Q 037299 738 AIVHSPNPLIPPIFASDENT---CCSEWNTAMEKLTGWSRGDIIGKMLVGEVFGSCCRLKGPDALTKFMIALHNAFGGQD 814 (1111)
Q Consensus 738 ~i~~~~~~l~~~I~v~D~~g---~ii~~N~a~~~l~G~~~eeliGk~l~~~v~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 814 (1111)
.+++++++ +|+++|.+| +++++|+++++++||++++++|++... + .+++........+...+..+.
T Consensus 3 ~~~~~~~~---~i~~~d~~g~~~~i~~~N~a~~~~~G~~~~el~g~~~~~-l-------~~~~~~~~~~~~~~~~~~~~~ 71 (132)
T 2pr5_A 3 HMLDHVRV---GVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRF-L-------QGKHTDPAEVDNIRTALQNKE 71 (132)
T ss_dssp ---CCCCC---EEEEECTTSTTCCEEEECHHHHHHHSCCHHHHTTSCGGG-G-------CCTTCCHHHHHHHHHHHHHTC
T ss_pred hHHhcCCC---cEEEEeCCCCCCcEEEECHHHHHHhCcCHHHHcCCChhh-h-------CCCCCCHHHHHHHHHHHHcCC
Confidence 45667666 899999977 999999999999999999999997521 1 122222222334444555566
Q ss_pred cceeeeeeecCCCCEEEEEEEEeeeecCCCCEEEEEeeeecccHHHHHHHHHHHHHH
Q 037299 815 TEKFPFPLFDRNGKYVQALLTANKRVNMEGQIVGAFCFLQIASPELQQALTVQRQQE 871 (1111)
Q Consensus 815 ~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~~~~DITer~~~e~el~~~~e 871 (1111)
.+..++.+.++||+.+|+.++..|+.+.+ +.+++++++|||++++.+.++++..+
T Consensus 72 ~~~~e~~~~~kdG~~~~~~~~~~~~~~~~--~~~~~~~~~DITe~k~~e~~l~~~~~ 126 (132)
T 2pr5_A 72 PVTVQIQNYKKDGTMFWNELNIDPMEIED--KTYFVGIQNDITKQKEYEKLLEDSLT 126 (132)
T ss_dssp CEEEEEEEECTTSCEEEEEEEEEEEEETT--EEEEEEEEEECHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEecCCCeeeeEEEEEeccCCC--eeEEEEEEEeCcHHHHHHHHHHHHHH
Confidence 67888899999999999999999998876 88999999999999998877665443
No 77
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=99.36 E-value=3e-12 Score=142.84 Aligned_cols=225 Identities=12% Similarity=0.071 Sum_probs=142.7
Q ss_pred HHHHhcCCcEEEEcCC-ccEEeecHHHHHHcCCChhhhcCCcccccccchhhHHHHHHHHHHH-H------c--------
Q 037299 607 RLIETATAPIFAVDVH-GCVNGWNAKVAELTGLSVEEAMGKSLVHDLVYKEYEEIVDNLLHHA-L------K-------- 670 (1111)
Q Consensus 607 ~lie~~~~~I~~~D~d-G~I~~~N~a~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~-l------~-------- 670 (1111)
.+++++..-+++++.+ |+|+|+++.+..++||+++|++|+++. +++||+|.+.+...+... + .
T Consensus 19 lll~a~dgF~~vvs~~~G~i~yvS~s~~~~Lg~~~~el~g~s~~-d~iHp~D~~~~~~~L~~~~lp~~~~~~~~~~~~~~ 97 (309)
T 3gdi_A 19 YIVKNADMFAVAVSLVSGKILYISNQVASIFHCKKDAFSDAKFV-EFLAPHDVSVFHSYTTPYKLPPWSVCSGLDSFTQE 97 (309)
T ss_dssp ----CTTEEEEEECTTTCBEEEECTTTTTTC-------CCSBGG-GGBCTTTHHHHHHHTCTTSSCBCC-----------
T ss_pred HHHHhcCCEEEEEECCCceEEEECCHHHHHcCCCHHHHcCCchh-hccCHhHHHHHHHhccccCCCCcccccCccccccc
Confidence 4677888888999986 999999999999999999999999999 999999999888765210 0 0
Q ss_pred CCCccceEEEEEEecc-ccCCcEEEEEEEeE--eeccCCCC--EEEEEEEEEechhHHHHHHHHHhHHHHHHHHHhCCCC
Q 037299 671 GEEDKNVEIKLRTFGA-ENRKKAVFVVVNAC--SSKDYTNN--IVGVCFVGQDVTDQKLVMDKFIHIQGDYKAIVHSPNP 745 (1111)
Q Consensus 671 ~~~~~~~e~~l~~~~~-~~dG~~~~v~v~~~--pi~d~~G~--v~gvv~v~~DITerK~ae~~L~~se~~l~~i~~~~~~ 745 (1111)
......+.++++..+. .+..+..++.+++. .+.+.+|. ...++.++.-+..- +...+.
T Consensus 98 ~~~~rsF~CRmr~~~~~~~~~~Y~~~~~~g~lk~~~~~~g~~~~~~lv~~a~~~~s~-----------------~~~p~~ 160 (309)
T 3gdi_A 98 CMEEKSFFCRVSVGKHHENEIRYQPFRMTPYLVKVQEQQGAESQLCCLLLAERVHSG-----------------YEAPRI 160 (309)
T ss_dssp ---CCCEEEEECCCC----CCCCEEEEEEEEEEECC--------EEEEEEEEECCCT-----------------TSSSCC
T ss_pred cCCceeEEEEEEccccCCCccceEEEEEEeeeccccCCCCCcCccEEEEEEEecCCC-----------------ccCCCc
Confidence 0012334445543211 11222333333332 23344454 22333333333210 000000
Q ss_pred C---CCCccccCCCCccccchhhhHHHhCCCccccccccccccccccccccCChhhHHHHHHHHHhhhCCCC-cce-eee
Q 037299 746 L---IPPIFASDENTCCSEWNTAMEKLTGWSRGDIIGKMLVGEVFGSCCRLKGPDALTKFMIALHNAFGGQD-TEK-FPF 820 (1111)
Q Consensus 746 l---~~~I~v~D~~g~ii~~N~a~~~l~G~~~eeliGk~l~~~v~~~~~~l~~~~~~~~~~~~l~~~~~~~~-~~~-~e~ 820 (1111)
. ..-+...+.+|+++++|+++..++||.++|++|+.. ..+.||+|...+...+.+++.++. ... .++
T Consensus 161 ~~~~~~Fitrh~~dG~~~yvd~~~~~lLGY~peELig~s~--------~~~iHpdD~~~~~~~~~~~l~~~g~~~~~~~y 232 (309)
T 3gdi_A 161 PPEKRIFTTTHTPNCLFQAVDERAVPLLGYLPQDLIETPV--------LVQLHPSDRPLMLAIHKKILQAGGQPFDYSPI 232 (309)
T ss_dssp CGGGCEEEEEECTTCBEEEECTTHHHHHSCCHHHHTTSBH--------HHHBCTTSHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred CCCCceEEEEecCCCeEEEECcccccccCcCHHHHcCCCH--------HHhCCHHHHHHHHHHHHHHHhcCCceeeceEE
Confidence 0 013666789999999999999999999999999975 466789999999888888887543 344 689
Q ss_pred eeecCCCCEEEEEEEEeeeecC-CCCEEEEEeeeeccc
Q 037299 821 PLFDRNGKYVQALLTANKRVNM-EGQIVGAFCFLQIAS 857 (1111)
Q Consensus 821 ~~~~~dG~~~~v~~~~~pi~d~-~G~v~g~v~~~~DIT 857 (1111)
+++++||.++|+......+.|. .+++..+++.-+.++
T Consensus 233 R~~~kdG~~vwvet~~~~~~np~s~~~e~ii~~h~v~~ 270 (309)
T 3gdi_A 233 RFRTRNGEYITLDTSWSSFINPWSRKISFIIGRHKVRV 270 (309)
T ss_dssp EEECTTSCEEEEEEEEEEEECTTTCCEEEEEEEEEEEE
T ss_pred EEEccCCCEEEEEEEEEEEECCCCCcccEEEEEEEEcc
Confidence 9999999999999999999886 567777787766554
No 78
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=99.35 E-value=2.3e-12 Score=124.46 Aligned_cols=125 Identities=11% Similarity=0.024 Sum_probs=97.8
Q ss_pred hhHHHHHHHHHhHHHHHHHHHhCCCCCCCCccccCCCCccccchhhhHHHhCCCccccccccccccccccccccCChhhH
Q 037299 720 TDQKLVMDKFIHIQGDYKAIVHSPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGDIIGKMLVGEVFGSCCRLKGPDAL 799 (1111)
Q Consensus 720 TerK~ae~~L~~se~~l~~i~~~~~~l~~~I~v~D~~g~ii~~N~a~~~l~G~~~eeliGk~l~~~v~~~~~~l~~~~~~ 799 (1111)
|+++++|++|++++.+|+.+++++++ +|+++|.+|+|++||+++++++||+++|++|+++.. +.+++..
T Consensus 2 ~~~~~~e~~l~~~~~~~~~l~~~~~d---~i~~~d~~g~i~~~N~a~~~l~Gy~~~eliG~~~~~--------l~~~~~~ 70 (130)
T 1d06_A 2 SHMLETEDVVRARDAHLRSILDTVPD---ATVVSATDGTIVSFNAAAVRQFGYAEEEVIGQNLRI--------LMPEPYR 70 (130)
T ss_dssp CHHHHHHHHHHHHTSCHHHHHTTCSS---EEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGGG--------GSCTTHH
T ss_pred chHHHHHHHHHHHHHHHHHHHhhCcC---eEEEECCCCeEEEEcHHHHHHHCCCHHHHcCCcHHH--------HCCchhH
Confidence 78999999999999999999999987 899999999999999999999999999999997632 2223433
Q ss_pred HHHHHHHHhhhCCCC----cceeeeeeecCCCCEEEEEEEEeeeecCCCCEEEEEeeeeccc
Q 037299 800 TKFMIALHNAFGGQD----TEKFPFPLFDRNGKYVQALLTANKRVNMEGQIVGAFCFLQIAS 857 (1111)
Q Consensus 800 ~~~~~~l~~~~~~~~----~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~~~~DIT 857 (1111)
......+........ ....++...++||+.+|+.++..|+.+.+ ..+++++++|||
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~~~~~~~~~~~~~~--~~~~~~~~~DIT 130 (130)
T 1d06_A 71 HEHDGYLQRYMATGEKRIIGIDRVVSGQRKDGSTFPMKLAVGEMRSGG--ERFFTGFIRDLT 130 (130)
T ss_dssp HHHHHHHHHHHHHCCCSSTTSCEEEEEECTTSCEEEEEEEEEEEEETT--EEEEEEEEEECC
T ss_pred HHHHHHHHHHHhcCCccccCCeeEEEEEeCCCCEEEEEEEEEEEEECC--eEEEEEEEEECc
Confidence 333333333222111 13457788999999999999999997643 345889999997
No 79
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=99.34 E-value=5.2e-12 Score=120.65 Aligned_cols=124 Identities=11% Similarity=0.057 Sum_probs=94.7
Q ss_pred echhHHHHHHHHHhHHHHHHHHHhCCCCCCCCccccCCCCccccchhhhHHHhCCCccccc--cccccccccccccccCC
Q 037299 718 DVTDQKLVMDKFIHIQGDYKAIVHSPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGDII--GKMLVGEVFGSCCRLKG 795 (1111)
Q Consensus 718 DITerK~ae~~L~~se~~l~~i~~~~~~l~~~I~v~D~~g~ii~~N~a~~~l~G~~~eeli--Gk~l~~~v~~~~~~l~~ 795 (1111)
|+|++|+++++|++++++|+.+++++++ +|+++|.+|+++++|+++++++||++++++ |++.... .+
T Consensus 1 ~~t~r~~~e~~L~~~~~~~~~l~e~~~~---~i~~~d~~g~i~~~N~a~~~~~G~~~~el~g~g~~~~~~--------~~ 69 (126)
T 3bwl_A 1 SNAERKRREKRLEETSSRLEALFENSPD---MIDVLDADGTICEVNQRFCAELGYDESEVLGRSIWEFDL--------MF 69 (126)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHCSS---EEEEECTTCBEEEECHHHHHHHTCCGGGTTTSBGGGTBT--------TC
T ss_pred CchhHHHHHHHHHHHHHHHHHHHhhCCc---EEEEEcCCCCEEEEcHHHHHHhCCCHHHHhhCCCchhhc--------cC
Confidence 6899999999999999999999999987 899999999999999999999999999994 5654221 22
Q ss_pred hhhHHHHHHHHHhhhCCCCcceeeeeeecCCCCEEEEEEEEeeeecCCCCEEEEEeeeeccc
Q 037299 796 PDALTKFMIALHNAFGGQDTEKFPFPLFDRNGKYVQALLTANKRVNMEGQIVGAFCFLQIAS 857 (1111)
Q Consensus 796 ~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~~~~DIT 857 (1111)
+...+...+..... .....++..+.++||+.+|+.++..++. .+|.. +++++++|||
T Consensus 70 --~~~~~~~~~~~~~~-~~~~~~e~~~~~~dG~~~~~~~~~~~~~-~~~~~-~~~~~~~DIT 126 (126)
T 3bwl_A 70 --DAEDVQTQLSGFSV-DERRKFEGLYERRDGSTMSVEVHLLRFN-LEGED-RFLAISRDIT 126 (126)
T ss_dssp --CHHHHHHHHHTCCT-TCEEEEEEEEECTTSCEEEEEEEEEEEE-ETTEE-EEEEEEEEC-
T ss_pred --CHHHHHHHHHHHhc-CCCcceEEEEEeCCCCEEEEEEEeEEEe-cCCcE-EEEEEEEeCC
Confidence 22223333322222 2344567788899999999998888874 34444 4778899997
No 80
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=99.33 E-value=2.2e-11 Score=116.25 Aligned_cols=120 Identities=17% Similarity=0.114 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCccEEeecHHHHHHcCCChhhh--cCCcccccccchhhHHHHHHHHHHH
Q 037299 591 ELQGVDELSSVAREMVRLIETATAPIFAVDVHGCVNGWNAKVAELTGLSVEEA--MGKSLVHDLVYKEYEEIVDNLLHHA 668 (1111)
Q Consensus 591 l~~~~~eL~~~~~~l~~lie~~~~~I~~~D~dG~I~~~N~a~~~l~G~~~eel--iG~~~~~~l~~~~~~~~~~~~l~~~ 668 (1111)
.++++++|++++++|+.++++++++|+++|.+|+|++||+++++++||+++++ +|+++. ++++ +...+...+...
T Consensus 5 r~~~e~~L~~~~~~~~~l~e~~~~~i~~~d~~g~i~~~N~a~~~~~G~~~~el~g~g~~~~-~~~~--~~~~~~~~~~~~ 81 (126)
T 3bwl_A 5 RKRREKRLEETSSRLEALFENSPDMIDVLDADGTICEVNQRFCAELGYDESEVLGRSIWEF-DLMF--DAEDVQTQLSGF 81 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSSEEEEECTTCBEEEECHHHHHHHTCCGGGTTTSBGGGT-BTTC--CHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcEEEEEcCCCCEEEEcHHHHHHhCCCHHHHhhCCCchh-hccC--CHHHHHHHHHHH
Confidence 55677889999999999999999999999999999999999999999999999 567766 5665 333333322222
Q ss_pred HcCCCccceEEEEEEeccccCCcEEEEEEEeEeeccCCCCEEEEEEEEEech
Q 037299 669 LKGEEDKNVEIKLRTFGAENRKKAVFVVVNACSSKDYTNNIVGVCFVGQDVT 720 (1111)
Q Consensus 669 l~~~~~~~~e~~l~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DIT 720 (1111)
..+ .....+.. ..+++|+.+|+.++..++.+ +|.. +++++++|||
T Consensus 82 ~~~-~~~~~e~~----~~~~dG~~~~~~~~~~~~~~-~~~~-~~~~~~~DIT 126 (126)
T 3bwl_A 82 SVD-ERRKFEGL----YERRDGSTMSVEVHLLRFNL-EGED-RFLAISRDIT 126 (126)
T ss_dssp CTT-CEEEEEEE----EECTTSCEEEEEEEEEEEEE-TTEE-EEEEEEEEC-
T ss_pred hcC-CCcceEEE----EEeCCCCEEEEEEEeEEEec-CCcE-EEEEEEEeCC
Confidence 222 22222222 34789999999998888743 4443 5788999998
No 81
>1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L*
Probab=99.32 E-value=3.8e-12 Score=127.26 Aligned_cols=134 Identities=11% Similarity=0.129 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcEEEEcCCccEEeecHHHHHHcCCChhhhcCCcccccccchhhHHHHHHHHHHHHc
Q 037299 591 ELQGVDELSSVAREMVRLIETATAPIFAVDVHGCVNGWNAKVAELTGLSVEEAMGKSLVHDLVYKEYEEIVDNLLHHALK 670 (1111)
Q Consensus 591 l~~~~~eL~~~~~~l~~lie~~~~~I~~~D~dG~I~~~N~a~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~ 670 (1111)
+.+..+++...+++++.++++++++++++|.+|+|+++|+++++++|++.++++|+++. +++++.........+.....
T Consensus 28 ~~~~~~~~~~~~~~~~~~l~~~~~~i~~~d~~g~i~~~N~~~~~l~g~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~ 106 (167)
T 1v9y_A 28 IMKLTDADNAADGIFFPALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNID-MLIPRDLRPAHPEYIRHNRE 106 (167)
T ss_dssp ------------CCHHHHHHTCSSEEEEECTTSBEEEECHHHHHHHSCCGGGTTTSBGG-GGSCGGGTTTHHHHHHHHHC
T ss_pred HHHHHHHHhhhhHHHHHHHHhCCCCEEEECCCCcEEEECHHHHHHhCCCHHHHcCCChh-hccCccccchHHHHHHHHhh
Confidence 44555667777888999999999999999999999999999999999999999999988 78888776666666777776
Q ss_pred CCCc----cceEEEEEEeccccCCcEEEEEEEeEeeccCCCCEEEEEEEEEechhHHHHHHHHHh
Q 037299 671 GEED----KNVEIKLRTFGAENRKKAVFVVVNACSSKDYTNNIVGVCFVGQDVTDQKLVMDKFIH 731 (1111)
Q Consensus 671 ~~~~----~~~e~~l~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DITerK~ae~~L~~ 731 (1111)
++.. ...++.+ .+++|..+|+.++..|+ +.+|.+ +++++++|||++|+++++++.
T Consensus 107 ~~~~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~-~~~g~~-~~~~~~~DiT~~~~~e~~l~~ 165 (167)
T 1v9y_A 107 GGKARVEGMSRELQL----EKKDGSKIWTRFALSKV-SAEGKV-YYLALVRDASVEMAQKEQTRQ 165 (167)
T ss_dssp ----------CEEEE----ECTTSCEEEEEEEEEEE-EETTEE-EEEEEEEC-------------
T ss_pred cCCCcccccceEEEE----EcCCCcEEEEEEEEEEE-ecCCCE-EEEEEEecCcHHHHHHHHHHh
Confidence 6543 2223333 36789999999999999 556666 499999999999999988764
No 82
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=99.32 E-value=5.7e-12 Score=118.15 Aligned_cols=117 Identities=11% Similarity=0.014 Sum_probs=106.7
Q ss_pred HHHHHHHHHhCCCCCCCCccccCCCCccccchhhhHHHhCCCccccccccccccccccccccCChhhHHHHHHHHHhhhC
Q 037299 732 IQGDYKAIVHSPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGDIIGKMLVGEVFGSCCRLKGPDALTKFMIALHNAFG 811 (1111)
Q Consensus 732 se~~l~~i~~~~~~l~~~I~v~D~~g~ii~~N~a~~~l~G~~~eeliGk~l~~~v~~~~~~l~~~~~~~~~~~~l~~~~~ 811 (1111)
++++|+.++++++. ++|.+|.+++++++|+++++++||+++++.++.. .+..+.||++...+...+..++.
T Consensus 2 s~~~~~~l~~~~~~---~i~~~d~~~~~~~~n~~~~~~~G~~~~~~~~~~~------~~~~~i~p~d~~~~~~~~~~~~~ 72 (118)
T 3icy_A 2 NAEELQALVDNIPA---AIYHLDVSGQATIRFRPPAFLKTLVSEHAGTTRL------NTLSMIHHDDRHMLSNAYSKLRE 72 (118)
T ss_dssp HHHHHHHHHTTCCC---CCEEECTTSCEEECCCCCGGGGGGEEEETTEEEE------GGGGGBCGGGHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhcCCc---eEEEEEcCCCceEEechhHhhcCCCHHHccCChh------HHHHHcCHHHHHHHHHHHHHHHh
Confidence 57789999999987 7999999999999999999999999999887653 23467789999999999999888
Q ss_pred CCCcceeeeeeecCCCCEEEEEEEEeeeecCCCCEEEEEeeeeccc
Q 037299 812 GQDTEKFPFPLFDRNGKYVQALLTANKRVNMEGQIVGAFCFLQIAS 857 (1111)
Q Consensus 812 ~~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~~~~DIT 857 (1111)
++.....++++.+++|+.+|+.....|+.+.+|.+.+++++++|||
T Consensus 73 ~~~~~~~e~r~~~~~g~~~w~~~~~~~~~~~~g~~~~~~g~~~DIT 118 (118)
T 3icy_A 73 AKHSLTLVYRIVTPEGKLHWIEDHMRSSFSDDGLFSGIDGILCEVT 118 (118)
T ss_dssp SCCEEEEEEEEECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred cCCCceEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEecC
Confidence 8888899999999999999999999999999999999999999998
No 83
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}
Probab=99.32 E-value=3.6e-12 Score=120.89 Aligned_cols=121 Identities=14% Similarity=0.160 Sum_probs=91.4
Q ss_pred HHHHHHhcCCcEEEEcCCccEEeecHHHHHHcCCChhhhcCCcccccccchhhHHHHHHHHHHHHcCCCccceEEEEEEe
Q 037299 605 MVRLIETATAPIFAVDVHGCVNGWNAKVAELTGLSVEEAMGKSLVHDLVYKEYEEIVDNLLHHALKGEEDKNVEIKLRTF 684 (1111)
Q Consensus 605 l~~lie~~~~~I~~~D~dG~I~~~N~a~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~l~~~ 684 (1111)
|+.++++++++|+++|.+|+|+++|+++++++|++.++++|+++. +++++++.......+..+..++.. ..++.+.
T Consensus 1 ~~~l~~~~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-- 76 (126)
T 3mjq_A 1 MKNFLETIEDMILIINREGRLLYANTAVPKKLGYTHEELMSMHIL-TITSAGKMAEGEKILAELFAGKKE-SLPLSLE-- 76 (126)
T ss_dssp -CTTGGGCSSEEEEEETTSBEEEECTHHHHHHSCCHHHHHHSBHH-HHHCTTCHHHHHHHHHHHHHTCCS-EEEEEEE--
T ss_pred ChhHHhhCCceEEEEeCCCcEEEEcHHHHHHHCCCHHHHcCCCHH-HHcCchhHHHHHHHHHHHHhCCCc-eeEEEEE--
Confidence 346789999999999999999999999999999999999999988 888888888888888888877655 3444443
Q ss_pred ccccCCcEEEEEEEeEeeccCCCCEEEEEEEEEechhHHHHHHHHHhHH
Q 037299 685 GAENRKKAVFVVVNACSSKDYTNNIVGVCFVGQDVTDQKLVMDKFIHIQ 733 (1111)
Q Consensus 685 ~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DITerK~ae~~L~~se 733 (1111)
+++|..+|+.++..|+.+ +...+++++++|||++|+++++...+.
T Consensus 77 --~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~DITe~k~a~~~~~~~~ 121 (126)
T 3mjq_A 77 --KKEGTSIPAKARIWQGKW--HNEPCLFAIIKDLSKEERASSPPFLEH 121 (126)
T ss_dssp --CTTSCEEEEEEEEEEEES--SSSEEEEEEEEECC-------------
T ss_pred --ccCCCEEEEEEEEEeeeE--CCceEEEEEEEechHHHHhhcccchhh
Confidence 678999999999987764 346789999999999999999876653
No 84
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=99.32 E-value=9.2e-13 Score=124.44 Aligned_cols=106 Identities=10% Similarity=0.085 Sum_probs=96.1
Q ss_pred CCccccCCCCccccchhhhHHHhCCCccccccccccccccccccccCChhhHHHHHHHHHhhhCCCCcceeeeeeecCCC
Q 037299 748 PPIFASDENTCCSEWNTAMEKLTGWSRGDIIGKMLVGEVFGSCCRLKGPDALTKFMIALHNAFGGQDTEKFPFPLFDRNG 827 (1111)
Q Consensus 748 ~~I~v~D~~g~ii~~N~a~~~l~G~~~eeliGk~l~~~v~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~dG 827 (1111)
..|+..|.+|+++++|+++++++||++++++|+++ ..+.||++...+...+..++.++.....++++++++|
T Consensus 10 ~~i~~~d~~g~i~~~n~~~~~~~Gy~~~el~g~~~--------~~~~~p~d~~~~~~~~~~~~~~~~~~~~e~r~~~~dG 81 (117)
T 3f1p_A 10 TFLSEHSMDMKFTYCDDRITELIGYHPEELLGRSA--------YEFYHALDSENMTKSHQNLCTKGQVVSGQYRMLAKHG 81 (117)
T ss_dssp EEEEEECTTCBEEEECTHHHHHHCCCHHHHTTSBG--------GGGBCGGGHHHHHHHHHHHHHHSEEECCCEEEECTTS
T ss_pred cEEEEECCCceEEEECcChhhhhCCCHHHHcCCch--------hheECHHHHHHHHHHHHHHHhCCCeeeeEEEEEecCC
Confidence 36889999999999999999999999999999864 4566799999999989888887777888999999999
Q ss_pred CEEEEEEEEeeeecC-CCCEEEEEeeeecccHHHH
Q 037299 828 KYVQALLTANKRVNM-EGQIVGAFCFLQIASPELQ 861 (1111)
Q Consensus 828 ~~~~v~~~~~pi~d~-~G~v~g~v~~~~DITer~~ 861 (1111)
+++|+..+..|+.|. +|.+.+++++.+|||++++
T Consensus 82 ~~~w~~~~~~~~~d~~~g~~~~iv~~~~DITer~~ 116 (117)
T 3f1p_A 82 GYVWLETQGTVIYNPRNLQPQCIMCVNYVLSEIEK 116 (117)
T ss_dssp SEEEEEEEEEEEEETTTTEEEEEEEEEEECSCCBC
T ss_pred CEEEEEEeeEEEECCCCCCceEEEEEeeecccccc
Confidence 999999999999998 8999999999999998654
No 85
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.30 E-value=1.1e-11 Score=140.78 Aligned_cols=121 Identities=14% Similarity=0.062 Sum_probs=103.4
Q ss_pred HHHHHhcCCcEEEEcC---CccEEeecHHHHHHcCCChhhhcCCcccccccchhhHHHHHHHHHHHHcCCCccceEEEEE
Q 037299 606 VRLIETATAPIFAVDV---HGCVNGWNAKVAELTGLSVEEAMGKSLVHDLVYKEYEEIVDNLLHHALKGEEDKNVEIKLR 682 (1111)
Q Consensus 606 ~~lie~~~~~I~~~D~---dG~I~~~N~a~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~l~ 682 (1111)
..++++++++||++|. +|+|++||+++++++||++++++|+++. .+.++++.......+...+..+.....++.+.
T Consensus 14 ~~~~~~~~~~i~~~D~~~~~g~i~~~N~a~~~l~G~~~~el~G~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 92 (332)
T 2wkq_A 14 ATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNAR-FLQGPETDRATVRKIRDAIDNQTEVTVQLINY 92 (332)
T ss_dssp CCCGGGCCSEEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGG-GGCCTTCCHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred HhHhhcCCCcEEEecCCCCCCCEEEeehHHHHHhCCCHHHHcCCCch-hhcCCCCCHHHHHHHHHHHHcCCeeEEEEEEE
Confidence 3578999999999999 9999999999999999999999999987 78777666666666666676666555454443
Q ss_pred EeccccCCcEEEEEEEeEeeccCCCCEEEEEEEEEechhHHHHHHHHHh
Q 037299 683 TFGAENRKKAVFVVVNACSSKDYTNNIVGVCFVGQDVTDQKLVMDKFIH 731 (1111)
Q Consensus 683 ~~~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DITerK~ae~~L~~ 731 (1111)
+++|+.+|+.++..|++|.+|.+.|++++++|||++|+.++++..
T Consensus 93 ----~~dG~~~~~~~~~~pi~d~~g~~~~~v~~~~DITe~k~~e~~~~~ 137 (332)
T 2wkq_A 93 ----TKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHVRDAAEREG 137 (332)
T ss_dssp ----CTTCCEEEEEEEEEEEECTTSCEEEEEEEEEEESSCCCHHHHHHH
T ss_pred ----cCCCCEEEEeeEEEEeEcCCCCEEEEEEEeccCchhhhhhhhccc
Confidence 789999999999999999999999999999999999998877643
No 86
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=99.29 E-value=3.6e-12 Score=153.35 Aligned_cols=108 Identities=12% Similarity=0.133 Sum_probs=91.5
Q ss_pred EEecHHHHHHHHHHHHHHHhhcCCCCCc---eEEEEEEEcc-ccCCCCceeEEEEEEEeeCCCCCChhhhhhccCCC---
Q 037299 986 VYGDQARIQQVLADFLLNMVRYSPSAEG---WVEIHVRPTL-KQSSEGQTIVHNEFRMVCPGEGLPPELVQDMFHSS--- 1058 (1111)
Q Consensus 986 v~~D~~~L~qVl~nLl~NAik~t~~~~g---~I~I~v~~~~-~~~~~~~~~~~v~i~V~DnG~GIp~e~~~~iFepf--- 1058 (1111)
+.+|+..|.|++.||+.||++|+.. +| .|.|++...+ + .+.|+|+|||+|||++.++++|++|
T Consensus 31 ~~~D~~~L~~Vl~ELV~NAIDa~~~-~g~~~~I~V~i~~~~~~---------~~~I~V~DnG~GIp~e~l~~iF~~~~at 100 (621)
T 2q2e_B 31 FDSAPRSLITTVKEAVDNALDACEE-AGILPDILVQVERTGPD---------YVTVIIEDNGPGIVREQIPKVFAKLLYG 100 (621)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHTT-TSCSCEEEECCEEETTT---------EEEEEEECCSCCCCGGGHHHHHSCCCCC
T ss_pred EecCHHHHHHHHHHHHHHHHHHHhh-cCCCcEEEEEEEECCCc---------EEEEEEEECCCCCCHHHHHHHhhhhccC
Confidence 6689999999999999999999875 35 7888776554 3 7899999999999999999999765
Q ss_pred ---C----CCCCccchHHHHHHHHHHcCCE-EEEEecCCc--eEEEEEEEeeCCC
Q 037299 1059 ---R----WMTQEGLGLSMCRKILKLMNGE-VQYIRESER--CYFLIIFELPMPR 1103 (1111)
Q Consensus 1059 ---~----~~~G~GLGL~i~r~iVe~~gG~-I~v~s~~gg--stF~~~L~LP~~~ 1103 (1111)
+ ..+|.|+||++|+.+++.|||+ |++++..++ ..|+|++++|...
T Consensus 101 skf~~~~~s~Gg~GlGLsiv~~ls~~~gG~~I~V~S~~~gg~~g~~~~~~lp~~~ 155 (621)
T 2q2e_B 101 SRFHALKQSRGQQGIGISAAVLYAQMTAGRHTKILSKTSPTAPAHYYELMINTST 155 (621)
T ss_dssp --CCCCC-CCSSSSHHHHHHHHHHHHHTCCCCEEEEECSSSSCEEEEECCCCSSS
T ss_pred CccccccccCCCceechhhhhHHHHHhCCCceeEEeeccCCccceEEEEecchhc
Confidence 1 2247899999999999999999 899887765 5778888888864
No 87
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=99.29 E-value=3.9e-12 Score=119.83 Aligned_cols=110 Identities=13% Similarity=0.115 Sum_probs=97.4
Q ss_pred CCccccC-CCCccccchhhhHHHhCCCccccccccccccccccccccCChhhHHHHHHHHHhhhCCCCcceeeeeeecCC
Q 037299 748 PPIFASD-ENTCCSEWNTAMEKLTGWSRGDIIGKMLVGEVFGSCCRLKGPDALTKFMIALHNAFGGQDTEKFPFPLFDRN 826 (1111)
Q Consensus 748 ~~I~v~D-~~g~ii~~N~a~~~l~G~~~eeliGk~l~~~v~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~d 826 (1111)
.++|.+| .+|+++++|+++++++||+++++.+.. .+..+.||++...+...+..++.++.....++++++++
T Consensus 4 ~giw~~d~~~~~~~~~n~~~~~l~G~~~~e~~~~~-------~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~e~r~~~~d 76 (115)
T 3h9w_A 4 AIPWKINWQTMAFEYIGPQIEALLGWPQGSWKSVE-------DWATRMHPEDQEWVVNFCVKQSECGVDHEADYRALHRD 76 (115)
T ss_dssp CEEEEEETTTTEEEEECTHHHHHHCSCGGGCCBHH-------HHHHSBCHHHHHHHHHHHHHHHHTTCCEEEEEEEECTT
T ss_pred eEEEEEEcCCCcEEEEChhHHHHhCCChHHccCHH-------HHHHhcCHHHHHHHHHHHHHHHhcCCcccEEEEEEcCC
Confidence 3799999 788899999999999999999998832 24567889999999999999988888889999999999
Q ss_pred CCEEEEEEEEeeeecCCCCEEEEEeeeecccHHHHHHH
Q 037299 827 GKYVQALLTANKRVNMEGQIVGAFCFLQIASPELQQAL 864 (1111)
Q Consensus 827 G~~~~v~~~~~pi~d~~G~v~g~v~~~~DITer~~~e~ 864 (1111)
|+++|+..++.+++|.+|.+.+++++..|||++|++|.
T Consensus 77 G~~~w~~~~~~~~~d~~G~~~~~~G~~~Dit~~k~~~~ 114 (115)
T 3h9w_A 77 GHYVWIRDVVHVVRDDSGEVEALIGFMFDISLEHHHHH 114 (115)
T ss_dssp SCEEEEEEEEEEEECTTSCEEEEEEEEEECGGGGC---
T ss_pred CCEEEEEEEEEEEECCCCCEEEEEEEEeccCccccccc
Confidence 99999999999999999999999999999999887763
No 88
>3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A
Probab=99.28 E-value=3.8e-12 Score=127.00 Aligned_cols=127 Identities=9% Similarity=0.048 Sum_probs=96.9
Q ss_pred HhHHHHHHHHHhCCCCCCCCccccC-CCCccccchhhhHHHhCCCccccccccccccccccccccCChhhHHHHHHHHHh
Q 037299 730 IHIQGDYKAIVHSPNPLIPPIFASD-ENTCCSEWNTAMEKLTGWSRGDIIGKMLVGEVFGSCCRLKGPDALTKFMIALHN 808 (1111)
Q Consensus 730 ~~se~~l~~i~~~~~~l~~~I~v~D-~~g~ii~~N~a~~~l~G~~~eeliGk~l~~~v~~~~~~l~~~~~~~~~~~~l~~ 808 (1111)
...+++|+.++++++. +|+++| .+|+++++|+++++++|++ +++|+++.+.+ ++.....+...+.+
T Consensus 13 ~~~~~~~~~~~~~~~~---~i~~~d~~~~~i~~~N~~~~~~~g~~--~~~G~~~~~~~--------~~~~~~~~~~~~~~ 79 (158)
T 3k3c_A 13 VGAAEDVRRIFEHIPA---ILVGLEGPDHRFVAVNAAYRGFSPLL--DTVGQPAREVY--------PELEGQQIYEMLDR 79 (158)
T ss_dssp TCCHHHHHHHHHHCSS---EEEEEETTTTEEEEECHHHHHHCTTC--CSTTSBHHHHS--------GGGGGTTHHHHHHH
T ss_pred HHHHHHHHHHHhcCCc---eEEEEECCCcEeHHHHHHHHHHcCCc--hhcCCcHHHhC--------CchhHHHHHHHHHH
Confidence 5566789999999977 899999 9999999999999999999 89999864322 23333334455666
Q ss_pred hhCCCCc-ceeeeee--ecCC--CCEEEEEEEEeeeecCCCCEEEEEeeeecccHHHHHHHHHHHH
Q 037299 809 AFGGQDT-EKFPFPL--FDRN--GKYVQALLTANKRVNMEGQIVGAFCFLQIASPELQQALTVQRQ 869 (1111)
Q Consensus 809 ~~~~~~~-~~~e~~~--~~~d--G~~~~v~~~~~pi~d~~G~v~g~v~~~~DITer~~~e~el~~~ 869 (1111)
++..+.. ...+..+ .... |..+|+.++..|+.+.+|.+.|++++++|||++++++.++++.
T Consensus 80 ~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~pi~~~~g~~~g~~~~~~DITe~k~~e~~l~~~ 145 (158)
T 3k3c_A 80 VYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSIEGVQLIVDDVTSRVRARQAAEAR 145 (158)
T ss_dssp HHHHCCCEEEEEEEEEEESSSSCEEEEEEEEEEEEEECTTSCEEEEEEEEEECHHHHHHHHHHHHH
T ss_pred HHHhCCcccccceeEEeccCCCCcceEEEEEEEEEeECCCCCEEEEEEEEEehhHHHHHHHHHHHH
Confidence 6644444 3333322 3322 7789999999999999999999999999999999888766543
No 89
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens}
Probab=99.28 E-value=1.1e-11 Score=117.56 Aligned_cols=112 Identities=14% Similarity=0.085 Sum_probs=95.5
Q ss_pred HHHHhcCCcEEEEcCCccEEeecHHHHHHcCCChhhhcCCcccccccchhhHHHHHHHHHHHHcCCC-ccceEEEEEEec
Q 037299 607 RLIETATAPIFAVDVHGCVNGWNAKVAELTGLSVEEAMGKSLVHDLVYKEYEEIVDNLLHHALKGEE-DKNVEIKLRTFG 685 (1111)
Q Consensus 607 ~lie~~~~~I~~~D~dG~I~~~N~a~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~-~~~~e~~l~~~~ 685 (1111)
.++++++++|+.+|.+|+++++|+++++++||++++++|+++. ++++|++.+.+...+..++.++. ....++++.
T Consensus 7 ~~~~~~~~~i~~~d~~g~i~~~N~~~~~~~G~~~~el~g~~~~-~~~~p~d~~~~~~~~~~~~~~~~~~~~~e~r~~--- 82 (121)
T 2kdk_A 7 EINVKPTEFITRFAVNGKFVYVDQRATAILGYLPQELLGTSCY-EYFHQDDHNNLTDKHKAVLQSKEKILTDSYKFR--- 82 (121)
T ss_dssp CCCCCSSEEEEEECTTSBEEEECTHHHHHTCCCTTTSBTSBTT-TTBCSSSHHHHHHHHHHHHTSSSCEEEEEEEEE---
T ss_pred ccccCCccEEEEECCCeeEEEEChhHHHHHCCCHHHHcCCcHH-HeeCHHHHHHHHHHHHHHHhCCCCCccEEEEEE---
Confidence 4678899999999999999999999999999999999999988 89999999888888888776533 334455544
Q ss_pred cccCCcEEEEEEEeEeeccCC-CCEEEEEEEEEechhHH
Q 037299 686 AENRKKAVFVVVNACSSKDYT-NNIVGVCFVGQDVTDQK 723 (1111)
Q Consensus 686 ~~~dG~~~~v~v~~~pi~d~~-G~v~gvv~v~~DITerK 723 (1111)
+++|+.+|+.++..|++|.+ +.+.+++++.+|||+.+
T Consensus 83 -~~dG~~~~~~~~~~~~~d~~~~~~~~~v~~~~~i~~~~ 120 (121)
T 2kdk_A 83 -AKDGSFVTLKSQWFSFTNPDTKELEYIVSVNTLVLGHS 120 (121)
T ss_dssp -CSSSCEEEEEEEEEEEECCSSSCEEEEEEEEECCSSCC
T ss_pred -EcCCCEEEEEEEEEEEECCCCCeeeEEEEEEEeccccC
Confidence 78999999999999999876 56777899999998754
No 90
>3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis}
Probab=99.27 E-value=8.5e-12 Score=119.11 Aligned_cols=113 Identities=16% Similarity=0.192 Sum_probs=91.3
Q ss_pred CCCccccCC---CCccccchhhhHHHhCCCccccccccccccccccccccCChhhHHHHHHHHHhhhCCCCcceeeeeee
Q 037299 747 IPPIFASDE---NTCCSEWNTAMEKLTGWSRGDIIGKMLVGEVFGSCCRLKGPDALTKFMIALHNAFGGQDTEKFPFPLF 823 (1111)
Q Consensus 747 ~~~I~v~D~---~g~ii~~N~a~~~l~G~~~eeliGk~l~~~v~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~ 823 (1111)
+.+|+++|. +|+++++|+++++++||++++++|+++.. +.+++....+...+...+..+.....++.+.
T Consensus 7 ~~~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~e~~g~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 78 (128)
T 3t50_A 7 LMPMLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRF--------LQGHGTDPAHVRAIKSAIAAEKPIDIDIINY 78 (128)
T ss_dssp SSCEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGG--------GCCTTSCHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred cccEEEecCCCCCCcEEEEcHHHHHHhCcCHHHHcCCCHhh--------hcCCccCHHHHHHHHHHHHcCCCceeEEEEE
Confidence 448999999 99999999999999999999999998532 2224444445555666667777788899999
Q ss_pred cCCCCEEEEEEEEeeeecCCCCEEEEEeeeecccHHHHHHHHHH
Q 037299 824 DRNGKYVQALLTANKRVNMEGQIVGAFCFLQIASPELQQALTVQ 867 (1111)
Q Consensus 824 ~~dG~~~~v~~~~~pi~d~~G~v~g~v~~~~DITer~~~e~el~ 867 (1111)
+++|..+|+.++..|+.+.+|.+.|++++++|||++++++.+.+
T Consensus 79 ~~~g~~~~~~~~~~~i~~~~g~~~~~~~~~~DITe~k~~e~~~~ 122 (128)
T 3t50_A 79 KKSGEAFWNRLHISPVHNANGRLQHFVSSQLDVTLELVPRGSLE 122 (128)
T ss_dssp CTTCCEEEEEEEEEEEECTTSCEEEEEEEEEECHHHHC------
T ss_pred cCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEcchhhhhhhhhh
Confidence 99999999999999999999999999999999999988886543
No 91
>3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui}
Probab=99.25 E-value=1.3e-11 Score=115.77 Aligned_cols=124 Identities=9% Similarity=0.042 Sum_probs=101.1
Q ss_pred HHHHHHHhHHHHHHHHHhCCCCCCCCccccCCC-CccccchhhhHHHhCCCccccccccccccccccccccCChhhHHHH
Q 037299 724 LVMDKFIHIQGDYKAIVHSPNPLIPPIFASDEN-TCCSEWNTAMEKLTGWSRGDIIGKMLVGEVFGSCCRLKGPDALTKF 802 (1111)
Q Consensus 724 ~ae~~L~~se~~l~~i~~~~~~l~~~I~v~D~~-g~ii~~N~a~~~l~G~~~eeliGk~l~~~v~~~~~~l~~~~~~~~~ 802 (1111)
++++++++++++++.++++++. ++|++|.+ |+++++|+++++++|+++++++|+.. .+....++++...+
T Consensus 1 ~~e~~l~~~~~~~~~~~~~~~~---~i~~~d~~~~~i~~~n~~~~~~~g~~~~~~~~~~~------~~~~~~~~~~~~~~ 71 (125)
T 3eeh_A 1 RAKQQAAKSERRVRELTEATND---ILWEFTADLSEVLVINSAYEDIWGRSVAKLRENPH------DFLNGIHPEDRELM 71 (125)
T ss_dssp ---------CHHHHHHHSCCCC---EEEEEETTSSCEEEECTHHHHHHSSCHHHHHHCGG------GGGGGBCHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhcCCc---eEEEEEcCCCcEEEecHHHHHHHCCCHHHHccCcH------HHHHhcCHHHHHHH
Confidence 3577888999999999999987 89999999 99999999999999999999998762 23456678888888
Q ss_pred HHHHHhhhCCCCcceeeeeeecCCCCEEEEEEEEeeeecCCCCEEEEEeeeeccc
Q 037299 803 MIALHNAFGGQDTEKFPFPLFDRNGKYVQALLTANKRVNMEGQIVGAFCFLQIAS 857 (1111)
Q Consensus 803 ~~~l~~~~~~~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~~~~DIT 857 (1111)
...+..... +.....++++.+++|+.+|+.++..|+.+.+|.+.+++++++|||
T Consensus 72 ~~~~~~~~~-~~~~~~e~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~DIT 125 (125)
T 3eeh_A 72 KDTMQSLMD-GESADVECRVNATEEYQRWVWIQGEPITNDAGETVRVAGFARDIT 125 (125)
T ss_dssp HHHHHHHHT-TCCEEEEEEECGGGTTCEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred HHHHHHHHc-CCCccEEEEEEcCCCCEEEEEEecEEEECCCCCEEEEEEEEEecC
Confidence 887777444 445688999999999999999999999999999999999999997
No 92
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=99.24 E-value=2e-11 Score=113.21 Aligned_cols=113 Identities=12% Similarity=0.100 Sum_probs=93.7
Q ss_pred HHHHHHHHhCCCCCCCCccccCCCCccccchhhhHHHhCCCccccccccccccccccccccCChhhHHHHHHHHHhhhCC
Q 037299 733 QGDYKAIVHSPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGDIIGKMLVGEVFGSCCRLKGPDALTKFMIALHNAFGG 812 (1111)
Q Consensus 733 e~~l~~i~~~~~~l~~~I~v~D~~g~ii~~N~a~~~l~G~~~eeliGk~l~~~v~~~~~~l~~~~~~~~~~~~l~~~~~~ 812 (1111)
+++++.++++++. +++++|.+|+++++|+++++++|+++++++|+++.+.+ +++...+...+..++.+
T Consensus 2 e~~~~~~~~~~~~---~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~---------~~~~~~~~~~~~~~~~~ 69 (114)
T 3luq_A 2 DERLRLFTEHAPA---ALAMFDREMRYLAVSRRWREDYGLGDGDILGMSHYDIF---------PEIGEEWKSVHRRGLAG 69 (114)
T ss_dssp CHHHHHHHHTCSS---EEEEEETTCBEEEECHHHHHHTTCCSSCCTTCBHHHHC---------TTCCHHHHHHHHHHHTT
T ss_pred hHHHHHHHhcCCc---eEEEEcCCcEEEEECHHHHHHHCCCHHHHcCCcHHHHC---------CccHHHHHHHHHHHhcC
Confidence 5678899999877 89999999999999999999999999999999864332 33334455666677776
Q ss_pred CCcceeeeeeecCCCCEEEEEEEEeeeecCCCCEEEEEeeeeccc
Q 037299 813 QDTEKFPFPLFDRNGKYVQALLTANKRVNMEGQIVGAFCFLQIAS 857 (1111)
Q Consensus 813 ~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~~~~DIT 857 (1111)
......+..+.+++|+.+|+.++..|+.+.+|.+.|++++++|||
T Consensus 70 ~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~g~~~~~~~~~~DIT 114 (114)
T 3luq_A 70 EVIRVEEDCFVRADGRTQWLRWEVRPWYEGEGRVGGVVIFTEDIT 114 (114)
T ss_dssp CCEEEEEEEEEC--CCEEEEEEEEEEEECTTSCEEEEEEEEEECC
T ss_pred CcceeeeeEEEcCCCcEEEEEEEEEEeECCCCCEEEEEEEEeeCC
Confidence 666555558899999999999999999999999999999999997
No 93
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}
Probab=99.22 E-value=2.9e-11 Score=112.72 Aligned_cols=120 Identities=17% Similarity=0.150 Sum_probs=102.1
Q ss_pred hHHHHHHHHHhCCCCCCCCccccCCCCccccchhhhHHHhCCCccccccccccccccccccccCChhhHHHHHHHHHhhh
Q 037299 731 HIQGDYKAIVHSPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGDIIGKMLVGEVFGSCCRLKGPDALTKFMIALHNAF 810 (1111)
Q Consensus 731 ~se~~l~~i~~~~~~l~~~I~v~D~~g~ii~~N~a~~~l~G~~~eeliGk~l~~~v~~~~~~l~~~~~~~~~~~~l~~~~ 810 (1111)
+++++++.++++++. +++++|.+|+++++|+++++++|+++++++|+++. . +.+++....+...+...+
T Consensus 4 ~~~~~~~~~~~~~~~---~i~~~d~~~~i~~~N~~~~~~~g~~~~~~~g~~~~-~-------~~~~~~~~~~~~~~~~~~ 72 (124)
T 3lyx_A 4 DILKQRAKAFDYVFD---AIVVTDLQGFIIDWNKGSETLYGYSKEQAIGQPVN-M-------LHVPGDTEHITSEVISAV 72 (124)
T ss_dssp CHHHHHHHGGGTCSS---EEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBGG-G-------GSCTTTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhcCc---eEEEECCCCcEeehhhHHHHHhCCCHHHHcCCCHH-H-------hcCcchhhHHHHHHHHHH
Confidence 456788999999877 89999999999999999999999999999999864 2 223555555666666777
Q ss_pred CCCCcceeeeeeecCCCCEEEEEEEEeeeecCCCCEEEEEeeeecccHHHH
Q 037299 811 GGQDTEKFPFPLFDRNGKYVQALLTANKRVNMEGQIVGAFCFLQIASPELQ 861 (1111)
Q Consensus 811 ~~~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~~~~DITer~~ 861 (1111)
.++.....++.+..++|+.+|+.++..|+.+.+|.+.|++++++|||++++
T Consensus 73 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~~~ 123 (124)
T 3lyx_A 73 ENQGKWTGEIRMLHKDGHIGWIESMCVPIYGENYQMVGALGINRDITKRKK 123 (124)
T ss_dssp HHTSCEEEEEEEECTTSCEEEEEEEEEEEECSTTCEEEEEEEEEECSCC--
T ss_pred HcCCcccceEEEEccCCCEEEEEEEEEEEECCCCCEEEEEEEEecchhhhc
Confidence 777778889999999999999999999999999999999999999998754
No 94
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=99.21 E-value=1.9e-11 Score=114.45 Aligned_cols=104 Identities=12% Similarity=0.127 Sum_probs=84.6
Q ss_pred CCCccccC---CCCccccchhhhHHHhCCCccccccccccccccccccccCChhhHHHHHHHHHhhhCCCCcceeeeeee
Q 037299 747 IPPIFASD---ENTCCSEWNTAMEKLTGWSRGDIIGKMLVGEVFGSCCRLKGPDALTKFMIALHNAFGGQDTEKFPFPLF 823 (1111)
Q Consensus 747 ~~~I~v~D---~~g~ii~~N~a~~~l~G~~~eeliGk~l~~~v~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~ 823 (1111)
..+|+++| .+|+|+++|++|++++||+++|++|++.. .+ .+++........+.+++..+..+..++..+
T Consensus 3 ~~~i~i~d~~~~~g~i~~~N~a~~~l~Gy~~~e~~G~~~~-~l-------~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 74 (109)
T 1n9l_A 3 RHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCR-FL-------QGEGTDPKEVQKIRDAIKKGEACSVRLLNY 74 (109)
T ss_dssp SCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGG-GG-------CCTTCCHHHHHHHHHHHHHTCCEEEEEEEE
T ss_pred ccEEEEEcCCCCCCeEEEEchHHHHHHCcCHHHHcCCCch-hc-------CCCCCCHHHHHHHHHHHHcCCcEEEEEEEE
Confidence 34899999 47999999999999999999999999742 11 223322233344555666667788899999
Q ss_pred cCCCCEEEEEEEEeeeecCCCCEEEEEeeeecccH
Q 037299 824 DRNGKYVQALLTANKRVNMEGQIVGAFCFLQIASP 858 (1111)
Q Consensus 824 ~~dG~~~~v~~~~~pi~d~~G~v~g~v~~~~DITe 858 (1111)
++||+.+|+.++..|++|.+|.+.+++++.+|||+
T Consensus 75 ~kdG~~~~~~~~~~pi~d~~G~~~~~v~~~~DITe 109 (109)
T 1n9l_A 75 RKDGTPFWNLLTVTPIKTPDGRVSKFVGVQVDVTS 109 (109)
T ss_dssp CTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCC
T ss_pred cCCCCEEEEEEEEEEEECCCCCEEEEEEEEEeCCC
Confidence 99999999999999999999999999999999994
No 95
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida}
Probab=99.21 E-value=1.6e-11 Score=122.50 Aligned_cols=130 Identities=15% Similarity=0.050 Sum_probs=106.3
Q ss_pred hHHHHHHHHHhCCCCCCCCccccCCCC---ccccchhhhHHHhCCCccccccccccccccccccccCChhhHHHHHHHHH
Q 037299 731 HIQGDYKAIVHSPNPLIPPIFASDENT---CCSEWNTAMEKLTGWSRGDIIGKMLVGEVFGSCCRLKGPDALTKFMIALH 807 (1111)
Q Consensus 731 ~se~~l~~i~~~~~~l~~~I~v~D~~g---~ii~~N~a~~~l~G~~~eeliGk~l~~~v~~~~~~l~~~~~~~~~~~~l~ 807 (1111)
.+++.++.++++++. +|+++|.+| +++++|+++++++|++.++++|+.+...+ +++....+...+.
T Consensus 22 ~~~~~~~~i~~~~~~---~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~--------~~~~~~~~~~~~~ 90 (162)
T 3sw1_A 22 INAQLLQSMVDASND---GIVVAEKEGDDTILIYVNAAFEYLTGYSRDEILYQDCRFLQ--------GDDRDQLGRARIR 90 (162)
T ss_dssp CCHHHHHHHHHTCSS---EEEEEEEETTEEEEEEECHHHHHHHTCCHHHHTTSBGGGGT--------TTCCCCHHHHHHH
T ss_pred chHHHHHHHHhhccC---cEEEEeCCCCccEEEEECHHHHHHHCCCHHHHcCCCcceec--------CCCcCHHHHHHHH
Confidence 346778999999977 899999999 99999999999999999999999863222 2333333344455
Q ss_pred hhhCCCCcceeeeeeecCCCCEEEEEEEEeeeecCCCCEEEEEeeeecccHHHHHHHHHHHHHH
Q 037299 808 NAFGGQDTEKFPFPLFDRNGKYVQALLTANKRVNMEGQIVGAFCFLQIASPELQQALTVQRQQE 871 (1111)
Q Consensus 808 ~~~~~~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~~~~DITer~~~e~el~~~~e 871 (1111)
..+..+.....++.+.+++|+.+|+.++..|+.+.+|.+.+++++++|||++++.+.++++..+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~g~~~~~~~~~~DiTe~k~~e~~l~~~~~ 154 (162)
T 3sw1_A 91 KAMAEGRPCREVLRNYRKDGSAFWNELSITPVKSDFDQRTYFIGIQKDVSRQVELERELAELRA 154 (162)
T ss_dssp HHHHHTCCEEEEEEEECTTCCEEEEEEEEEEEECSSSSCEEEEEEEEECHHHHHHHHHHHHHTC
T ss_pred HHHhcCCCCcceEEEECCCCCEEEEEEEEEEeecCCCCEEEEEEEEEeCcHHHHHHHHHHHHHH
Confidence 5555666778889999999999999999999999999999999999999999998877665443
No 96
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=99.21 E-value=4.2e-11 Score=112.14 Aligned_cols=111 Identities=12% Similarity=0.010 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEcCCccEEeecHHHHHHcCCChhhhcCCcccccccchhhHHHHHHHHHHHHcCCCccce
Q 037299 598 LSSVAREMVRLIETATAPIFAVDVHGCVNGWNAKVAELTGLSVEEAMGKSLVHDLVYKEYEEIVDNLLHHALKGEEDKNV 677 (1111)
Q Consensus 598 L~~~~~~l~~lie~~~~~I~~~D~dG~I~~~N~a~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~ 677 (1111)
+++..+.++.++++++++|+++|.+|+|+++|+++++++||++++++|+++. +++++..... +.....++ ....
T Consensus 8 ~e~~~~~~~~~~~~~~~~i~~~d~~g~i~~~N~~~~~l~G~~~~el~g~~~~-~~~~~~~~~~----~~~~~~~~-~~~~ 81 (118)
T 3olo_A 8 SELEFKFAHYLINNAVEASFCLGDNWQFLYVNDATCRMTEYSREQLLSMNLQ-DIDVDFALHD----WEEIRQKN-NYTF 81 (118)
T ss_dssp HHHHHHHHHHHHHHCSSEEEEECTTSBEEEECHHHHHHHCCCHHHHTTCBGG-GTBTTGGGSC----HHHHHHHS-EEEE
T ss_pred HHHHHHHHHHHHhcCCceEEEECCCCcEEEEHHHHHHHHCCCHHHHhCCChh-hcccccCHHH----HHHHHhcC-cEEE
Confidence 3444556788999999999999999999999999999999999999999987 6665543332 22222222 2222
Q ss_pred EEEEEEeccccCCcEEEEEEEeEeeccCCCCEEEEEEEEEech
Q 037299 678 EIKLRTFGAENRKKAVFVVVNACSSKDYTNNIVGVCFVGQDVT 720 (1111)
Q Consensus 678 e~~l~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DIT 720 (1111)
+.. ..+++|..+|+.++..|+.+.+ ..+++++++|||
T Consensus 82 e~~----~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~DIT 118 (118)
T 3olo_A 82 KTR----YRSQSGRIFLVEMSLTFLEDQE--RRFSCVFVREKS 118 (118)
T ss_dssp EEE----EECTTCCEEEEEEEEEEEEETT--EEEEEEEEEEC-
T ss_pred EEE----EEccCCCEEEEEEEEEEEEECC--ccEEEEEEEeCC
Confidence 333 3478999999999999997643 346779999997
No 97
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=99.20 E-value=1.9e-11 Score=116.00 Aligned_cols=108 Identities=12% Similarity=0.119 Sum_probs=80.1
Q ss_pred HHHHHHHHHHhcCCcEEEEcCCccEEeecHHHHHHcCCChhhhcCCcccccccchhhHHHHHHHHHHHHcCCCccceEEE
Q 037299 601 VAREMVRLIETATAPIFAVDVHGCVNGWNAKVAELTGLSVEEAMGKSLVHDLVYKEYEEIVDNLLHHALKGEEDKNVEIK 680 (1111)
Q Consensus 601 ~~~~l~~lie~~~~~I~~~D~dG~I~~~N~a~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~ 680 (1111)
.+++++.++++++++|+++|.+|+|+++|+++++++|+++++++|+++. ++++++...............+... .
T Consensus 17 ~~~~~~~i~~~~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~ 91 (125)
T 3fc7_A 17 TRKKFESLVSDSPDGIVHLTTNGTILSVNPSMAGRLGADPDTLVGQQLS-AVMDSEAANQRLEAGKSAVENGTAT----R 91 (125)
T ss_dssp ---------CCSCCEEEEEETTSBEEEECHHHHHHHTSCHHHHTTSBGG-GSSCHHHHHHHHHHHHHHHHHTSCE----E
T ss_pred HHHHHHHHHhcCCCeEEEEcCCCeEEEECHHHHHHhCCCHHHHcCccHH-HhCCHHHHHHHHHHHHHHhcCCCeE----E
Confidence 7788999999999999999999999999999999999999999999998 7776666555555556666555432 1
Q ss_pred EEEeccccCCc-EEEEEEEeEeeccCCCCEEEEEEEEEech
Q 037299 681 LRTFGAENRKK-AVFVVVNACSSKDYTNNIVGVCFVGQDVT 720 (1111)
Q Consensus 681 l~~~~~~~dG~-~~~v~v~~~pi~d~~G~v~gvv~v~~DIT 720 (1111)
..+|. .+|+.++..|+.+. |...|++++++|||
T Consensus 92 ------~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~DIT 125 (125)
T 3fc7_A 92 ------SEDAVGGRHYHNQYIPVDSH-RKSDTFQLVSRDIT 125 (125)
T ss_dssp ------EEEEETTEEEEEEEEESSTT-TTTTEEEEEEEECC
T ss_pred ------eEcCCCcEEEEEEEEeEecC-CCeEEEEEEEecCC
Confidence 12455 78999999998765 66679999999998
No 98
>3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=99.20 E-value=1.4e-10 Score=124.95 Aligned_cols=151 Identities=12% Similarity=0.072 Sum_probs=92.2
Q ss_pred HHHHHHHHHHhcCCcEEEEcCCccEEeecHHHHHHc------------CCChhhhcCCcccccccchhhHHHHHHHHHHH
Q 037299 601 VAREMVRLIETATAPIFAVDVHGCVNGWNAKVAELT------------GLSVEEAMGKSLVHDLVYKEYEEIVDNLLHHA 668 (1111)
Q Consensus 601 ~~~~l~~lie~~~~~I~~~D~dG~I~~~N~a~~~l~------------G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~ 668 (1111)
..++++.++++++++|+++|.+|+|+|+|+++++++ ||++++++|+++. .+++... .....+..
T Consensus 20 e~~~l~~iLd~~~~~vii~D~~g~I~~~N~a~~~ll~~~~~~~~~~l~G~~~~eliG~~~~-~~~~~~~--~~~~~~~~- 95 (233)
T 3vol_A 20 HMARIKSALDNVSANVMIADNDLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANID-VFHKNPA--HQRHLLAN- 95 (233)
T ss_dssp HHHHHHHHHTTSSSEEEEEETTSBEEEECHHHHHHHHHTHHHHHTTCTTCCTTSCTTCBGG-GGSSSHH--HHHHHHHT-
T ss_pred HHHHHHHHHhcCCCcEEEECCCCcEEEecHHHHHHHHHHHHHHHhhcCCCCHHHHcCCCHH-HHcCCHH--HHHHHHHh-
Confidence 346678899999999999999999999999999998 8999999999987 5554321 11222221
Q ss_pred HcCCCccceEEEEEEeccccCCcEEEEEEEeEeeccCCCCEEEEEEEEEechhHHHHHHHHHhHHHHHHHHHhCCCCCCC
Q 037299 669 LKGEEDKNVEIKLRTFGAENRKKAVFVVVNACSSKDYTNNIVGVCFVGQDVTDQKLVMDKFIHIQGDYKAIVHSPNPLIP 748 (1111)
Q Consensus 669 l~~~~~~~~e~~l~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DITerK~ae~~L~~se~~l~~i~~~~~~l~~ 748 (1111)
+.+ ..+..+. .+| .|+.++..|++|.+|++.|++++++|||+++++++++....+...
T Consensus 96 ~~~----~~~~~~~-----~~g--~~~~~~~~Pi~d~~G~~~g~v~~~~DITe~~~~e~ei~~l~~a~~----------- 153 (233)
T 3vol_A 96 LTG----VHKAELN-----LGG--RRFSLDVVPVFNDANERLGSAVQWTDRTEEHRAEQEVSQLVQAAA----------- 153 (233)
T ss_dssp CCS----CEEEEEE-----ETT--EEEEEEEEEEECTTCCEEEEEEEEEECHHHHHHHHHHHHHHHHHH-----------
T ss_pred ccc----ceeEEEE-----ECC--EEEEEEEEEEECCCCCEEEEEEEEehhhHHHHHHHHHHHHHHHHh-----------
Confidence 211 1222332 233 477999999999999999999999999999999988766543322
Q ss_pred CccccCCCCccc-cchhhhHHHhCCCccccccc
Q 037299 749 PIFASDENTCCS-EWNTAMEKLTGWSRGDIIGK 780 (1111)
Q Consensus 749 ~I~v~D~~g~ii-~~N~a~~~l~G~~~eeliGk 780 (1111)
..|..+++. ..|..+.+.+++.-.+++++
T Consensus 154 ---~gdl~~ri~~~~~~~~~~~l~~~ln~l~~~ 183 (233)
T 3vol_A 154 ---AGDFSKRVEEAGKEGFFLRLAKDLNSLVDT 183 (233)
T ss_dssp ---CC----------------------------
T ss_pred ---CCcccccccccccchHHHHHHHHHHHHHHH
Confidence 124566665 56777777777776666654
No 99
>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}
Probab=99.18 E-value=2.6e-11 Score=114.99 Aligned_cols=114 Identities=16% Similarity=0.169 Sum_probs=85.3
Q ss_pred HHHHhHHHHHHHHHhCCCCCCCCccccCCCCccccchhhhHHHhCCCccccccccccccccccccccCChhhHHHHHHHH
Q 037299 727 DKFIHIQGDYKAIVHSPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGDIIGKMLVGEVFGSCCRLKGPDALTKFMIAL 806 (1111)
Q Consensus 727 ~~L~~se~~l~~i~~~~~~l~~~I~v~D~~g~ii~~N~a~~~l~G~~~eeliGk~l~~~v~~~~~~l~~~~~~~~~~~~l 806 (1111)
.+|++++++|+.+++++++ +|+++|.+|+++++|+++++++||+++|++|++.. .+.+ +.........+
T Consensus 4 ~~l~~se~~~~~l~e~~~d---~i~~~d~~g~i~~vN~a~~~l~Gy~~~el~g~~~~-~~~~-------~~~~~~~~~~~ 72 (117)
T 2r78_A 4 ENLYFQSNAYRALFEHAID---GIFIMDAEGHYLDVNPAICSAIGYTRDEFLALDWG-VLSR-------GVDSGWAAASL 72 (117)
T ss_dssp CSHHHHHHHHHHHHHHCSS---EEEEECTTSBEEEECHHHHHHHCCCHHHHTTCBTT-TTTT-------CSTTSHHHHHH
T ss_pred hHHHHhHHHHHHHHhcCCc---eEEEECCCCCEEEecHHHHHHHCcCHHHHcCCCHH-HhCC-------ccchhHHHHHH
Confidence 4578889999999999988 89999999999999999999999999999999752 2211 11101111122
Q ss_pred HhhhCCCCcceeeeeeecCCCCEEEEEEEEeeeecCCCCEEEEEeeeeccc
Q 037299 807 HNAFGGQDTEKFPFPLFDRNGKYVQALLTANKRVNMEGQIVGAFCFLQIAS 857 (1111)
Q Consensus 807 ~~~~~~~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~~~~DIT 857 (1111)
. .+..+.....+.++.++||+.+|+.++..|+. +|. ++++++|||
T Consensus 73 ~-~~~~~~~~~~e~~~~~kdG~~~~v~~~~~~~~--~g~---~~~i~~DIT 117 (117)
T 2r78_A 73 A-RIVGGEPLREERTVWTRNGDQLTVELSAHLLP--DGK---ILGIARDVS 117 (117)
T ss_dssp H-HHHTTCCEEEEEEEECTTSCEEEEEEEEEECT--TSC---EEEEEEC--
T ss_pred H-HHHcCCcEEEEEEEEecCCCEEEEEEEEEEec--CCe---EEEEEEeCC
Confidence 2 23344456788999999999999999999885 565 567889997
No 100
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Probab=99.17 E-value=1.6e-11 Score=116.53 Aligned_cols=116 Identities=11% Similarity=0.149 Sum_probs=89.0
Q ss_pred HHHHHHhCCCCCCCCccccCCCCccccchhhhHHHhCCCccccccccccccccccccccCChhhHHHHHHHHHhhhCCCC
Q 037299 735 DYKAIVHSPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGDIIGKMLVGEVFGSCCRLKGPDALTKFMIALHNAFGGQD 814 (1111)
Q Consensus 735 ~l~~i~~~~~~l~~~I~v~D~~g~ii~~N~a~~~l~G~~~eeliGk~l~~~v~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 814 (1111)
.|+.++++++. +|+ +|.+|+++++|+++++++||++++++|+++. .+++ +++....+...+...+..+.
T Consensus 4 ~~~~~~~~~~~---~i~-~~~~g~i~~~N~a~~~l~G~~~~el~g~~~~-~~~~------~~~~~~~~~~~~~~~~~~~~ 72 (120)
T 3mqq_A 4 DYKTAFHLAPI---GLV-LSRDRVIEDCNDELAAIFRCARADLIGRSFE-VLYP------SSDEFERIGERISPVMIAHG 72 (120)
T ss_dssp CHHHHHHHCSS---EEE-EEETTEEEEECHHHHHHTTSCHHHHTTCBGG-GGSS------SHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHhcCCc---eEE-EecCCEEHHHHHHHHHHhCcCHHHhCCCchh-hccC------ChhhHHHHHHHHHHHHhcCC
Confidence 47889999877 775 5789999999999999999999999999863 2221 12233445555555555566
Q ss_pred cceeeeeeecCCCCEEEEEEEEeeeecCCCCEEEEEeeeecccHHHHH
Q 037299 815 TEKFPFPLFDRNGKYVQALLTANKRVNMEGQIVGAFCFLQIASPELQQ 862 (1111)
Q Consensus 815 ~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~~~~DITer~~~ 862 (1111)
.+..++.+.+++|+.+|+.++..++ +.+|...+++++++|||++|+.
T Consensus 73 ~~~~e~~~~~~dG~~~~~~~~~~~~-~~~~~~~~~v~~~~DITerk~~ 119 (120)
T 3mqq_A 73 SYADDRIMKRAGGELFWCHVTGRAL-DRTAPLAAGVWTFEDLSATRRV 119 (120)
T ss_dssp CEEEEEEEECTTSCEEEEEEEEEES-STTSTTSSEEEEEEESCC----
T ss_pred cceEEEEEEeCCCCEEEEEEEEEEC-CCCCCceeEEEEEEcccHhhcc
Confidence 6788999999999999999999998 6667677899999999998764
No 101
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal trans phototropin1, nucleotide-binding; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A*
Probab=99.17 E-value=4.8e-11 Score=114.94 Aligned_cols=114 Identities=14% Similarity=0.172 Sum_probs=95.7
Q ss_pred HHHHhCCCCCCCCccccCC---CCccccchhhhHHHhCCCccccccccccccccccccccCChhhHHHHHHHHHhhhCCC
Q 037299 737 KAIVHSPNPLIPPIFASDE---NTCCSEWNTAMEKLTGWSRGDIIGKMLVGEVFGSCCRLKGPDALTKFMIALHNAFGGQ 813 (1111)
Q Consensus 737 ~~i~~~~~~l~~~I~v~D~---~g~ii~~N~a~~~l~G~~~eeliGk~l~~~v~~~~~~l~~~~~~~~~~~~l~~~~~~~ 813 (1111)
+.++++++. +++++|. +|+++++|+++++++|++.++++|+++.. +.+++....+...+...+..+
T Consensus 5 ~~~~~~~~~---~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~--------~~~~~~~~~~~~~~~~~~~~~ 73 (146)
T 2v0u_A 5 ATTLERIEK---NFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRF--------LQGPETDRATVRKIRDAIDNQ 73 (146)
T ss_dssp CCTGGGSSS---CEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGG--------GCCTTSCHHHHHHHHHHHHTT
T ss_pred HHHHhcCCC---cEEEEcCCCCCceEEEEcHHHHHHHCcCHHHHcCCCHHH--------hcCCcCChHHHHHHHHHHhcC
Confidence 445666665 8999999 99999999999999999999999987632 223444455556666667777
Q ss_pred CcceeeeeeecCCCCEEEEEEEEeeeecCCCCEEEEEeeeecccHHHH
Q 037299 814 DTEKFPFPLFDRNGKYVQALLTANKRVNMEGQIVGAFCFLQIASPELQ 861 (1111)
Q Consensus 814 ~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~~~~DITer~~ 861 (1111)
.....++.+..++|..+|+.++..|+.+.+|.+.+++++++|||++++
T Consensus 74 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~~~ 121 (146)
T 2v0u_A 74 TEVTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHVR 121 (146)
T ss_dssp CCEEEEEEEECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEEESSCCC
T ss_pred CCcceEEEEEecCCcEEEEEEEEEEeECCCCCEEEEEEEEeechHHHH
Confidence 778889999999999999999999999999999999999999999887
No 102
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=99.17 E-value=1.4e-10 Score=123.93 Aligned_cols=111 Identities=14% Similarity=0.173 Sum_probs=91.3
Q ss_pred HHHHHHHHhcCCcEEEEcCCccEEeecHHHHHHcCCChhhhcCCcccccccchhhHHHHHHHHHHHHcCCCccceEEEEE
Q 037299 603 REMVRLIETATAPIFAVDVHGCVNGWNAKVAELTGLSVEEAMGKSLVHDLVYKEYEEIVDNLLHHALKGEEDKNVEIKLR 682 (1111)
Q Consensus 603 ~~l~~lie~~~~~I~~~D~dG~I~~~N~a~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~l~ 682 (1111)
++++.++++++++|+++|.+|+|+++|+++++++||+.+|++|++.. .+.++.........+...+..+.....++..+
T Consensus 111 ~~~~~~~~~~~~~i~~~d~~g~i~~~N~~~~~~~G~~~~e~~g~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 189 (227)
T 3ewk_A 111 ARLKQAMDANSEMILLTDRAGRIIYANPALCRFSGMAEGELLGQSPS-ILDSPLADQETLAAMQEALQAGQPWSGRLLNR 189 (227)
T ss_dssp HHHHHHHHTCCSEEEEECTTSCEEEECHHHHHHHTCCTHHHHSSCGG-GGBCTTSCHHHHHHHHHHHHHTCCEECCEEEE
T ss_pred HHHHHHHhcCcCeEEEEcCCCcEEEEchHHHHHhCCCHHHHcCCChh-hccCCCCCHHHHHHHHHHHHcCCceeEEEEEE
Confidence 34667899999999999999999999999999999999999999987 77777655555555666665555555455444
Q ss_pred EeccccCC------cEEEEEEEeEeeccCCCCEEEEEEEEEe
Q 037299 683 TFGAENRK------KAVFVVVNACSSKDYTNNIVGVCFVGQD 718 (1111)
Q Consensus 683 ~~~~~~dG------~~~~v~v~~~pi~d~~G~v~gvv~v~~D 718 (1111)
+++| ..+|+.++..|++|.+|.+.|++++.+|
T Consensus 190 ----~k~G~~~~dg~~~~~~~~~~pi~d~~g~~~~~v~i~~D 227 (227)
T 3ewk_A 190 ----RRTGPAPHDAEDYWAEISTTPIHTDGNGLVGYVQIQHD 227 (227)
T ss_dssp ----EECCSSSSCEEEEEEEEEEEEEECSSSCEEEEEEEEEC
T ss_pred ----CCCCCcCcccceEEEEEEEEEEECCCCCEEEEEEEecC
Confidence 4455 4899999999999999999999999987
No 103
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=99.16 E-value=6.9e-11 Score=111.97 Aligned_cols=111 Identities=16% Similarity=0.066 Sum_probs=74.4
Q ss_pred CCCccccCCCCccccchhhhHHHhCCCccccccccccccccccccccCChhhHHHHHHHHHhhhCCCC----cceeeeee
Q 037299 747 IPPIFASDENTCCSEWNTAMEKLTGWSRGDIIGKMLVGEVFGSCCRLKGPDALTKFMIALHNAFGGQD----TEKFPFPL 822 (1111)
Q Consensus 747 ~~~I~v~D~~g~ii~~N~a~~~l~G~~~eeliGk~l~~~v~~~~~~l~~~~~~~~~~~~l~~~~~~~~----~~~~e~~~ 822 (1111)
+++|+++|.+|+|++||+++++++||++++++|+++.. +.+++........+........ ....++..
T Consensus 3 ~d~i~~~d~~g~i~~~N~a~~~l~G~~~~el~G~~~~~--------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (119)
T 2vv6_A 3 PDAMIVIDGHGIIQLFSTAAERLFGWSELEAIGQNVNI--------LMPEPDRSRHDSYISRYRTTSDPHIIGIGRIVTG 74 (119)
T ss_dssp CCEEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGGG--------GSCTTHHHHHHHHHHHHHHHCCCSSTTTCEEEEE
T ss_pred cceEEEECCCCeEEEEhHHHHHHhCCCHHHHcCCCHHH--------hCCchHHHHHHHHHHHHhcCCCcccCCCceEEEE
Confidence 45899999999999999999999999999999997632 2223333332333333222221 13457788
Q ss_pred ecCCCCEEEEEEEEeeeecCCCCEEEEEeeeecccHHHHHHHHHH
Q 037299 823 FDRNGKYVQALLTANKRVNMEGQIVGAFCFLQIASPELQQALTVQ 867 (1111)
Q Consensus 823 ~~~dG~~~~v~~~~~pi~d~~G~v~g~v~~~~DITer~~~e~el~ 867 (1111)
.++||+.+|+.++..++.+.+ ..+++++++|||++++.+.+++
T Consensus 75 ~~~dG~~~~~~~~~~~~~~~~--~~~~~~~~~DITerk~~e~~l~ 117 (119)
T 2vv6_A 75 KRRDGTTFPMHLSIGEMQSGG--EPYFTGFVRDLTEHQQTQARLQ 117 (119)
T ss_dssp ECTTSCEEEEEEEEEEEEETT--EEEEEEEEEECC----------
T ss_pred EeCCCCEEEEEEEEEEEEECC--eEEEEEEEEEcHHHHHHHHHHH
Confidence 999999999999999997643 3468899999999998876543
No 104
>4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A*
Probab=99.16 E-value=5.4e-11 Score=110.32 Aligned_cols=105 Identities=17% Similarity=0.184 Sum_probs=89.1
Q ss_pred CCCccccCC---CCccccchhhhHHHhCCCccccccccccccccccccccCChhhHHHHHHHHHhhhCCCCcceeeeeee
Q 037299 747 IPPIFASDE---NTCCSEWNTAMEKLTGWSRGDIIGKMLVGEVFGSCCRLKGPDALTKFMIALHNAFGGQDTEKFPFPLF 823 (1111)
Q Consensus 747 ~~~I~v~D~---~g~ii~~N~a~~~l~G~~~eeliGk~l~~~v~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~ 823 (1111)
+.+++++|. +|+++++|+++++++||++++++|++.. .+.+++........+...+..+.....++.+.
T Consensus 7 ~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (115)
T 4eet_B 7 EKNFVITDPRLPDNPIIFASDGFLELTEYSREEILGRNAR--------FLQGPETDQATVQKIRDAIRDQRETTVQLINY 78 (115)
T ss_dssp CCSEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGG--------GGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred CCcEEEEcCCCCCCcEEEEcHHHHHHHCcCHHHHhCCCHH--------HhcCCCCChHHHHHHHHHHHcCCCcceEEEEe
Confidence 448999999 9999999999999999999999999852 22234444455556666677777788899999
Q ss_pred cCCCCEEEEEEEEeeeecCCCCEEEEEeeeecccHH
Q 037299 824 DRNGKYVQALLTANKRVNMEGQIVGAFCFLQIASPE 859 (1111)
Q Consensus 824 ~~dG~~~~v~~~~~pi~d~~G~v~g~v~~~~DITer 859 (1111)
+++|+.+|+.++..|+.+.+|.+.+++++++|||++
T Consensus 79 ~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~DITer 114 (115)
T 4eet_B 79 TKSGKKFWNLLHLQPVRDQKGELQYFIGVQLDGSDH 114 (115)
T ss_dssp CTTCCEEEEEEEEEEEECTTSCEEEEEEEEEECSCC
T ss_pred cCCCCEEEEEEEEEEEECCCCCEEEEEEEEEeeccc
Confidence 999999999999999999999999999999999975
No 105
>3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor}
Probab=99.16 E-value=2.5e-11 Score=121.37 Aligned_cols=124 Identities=10% Similarity=0.045 Sum_probs=93.4
Q ss_pred HHHHhHHHHHHHHHhCCCCCCCCccccCCCCccccchhhhHHHhCCCccccccccccccccccccccCChhhHHHHHHHH
Q 037299 727 DKFIHIQGDYKAIVHSPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGDIIGKMLVGEVFGSCCRLKGPDALTKFMIAL 806 (1111)
Q Consensus 727 ~~L~~se~~l~~i~~~~~~l~~~I~v~D~~g~ii~~N~a~~~l~G~~~eeliGk~l~~~v~~~~~~l~~~~~~~~~~~~l 806 (1111)
.++++++..++.++++++. ||+++|.+|+|++||+++++++|+++++++|+++.+ +++ . ....+...+
T Consensus 15 ~~~~~~~~~l~~il~~~~~---gi~v~D~~g~I~~~N~a~~~~~G~~~~eviG~~~~~-~~p-------~-~~~~~~~~l 82 (152)
T 3mxq_A 15 NAMAKSRLLLSELLDQLSF---ALCIVRNDYVIVKVNEYFESRVIFDGETMQGKNILE-LFP-------E-SADYLKRKI 82 (152)
T ss_dssp HHHHHHHHHHHHHHHHHCC---EEEEEETTSBEEEECHHHHHTSSSCHHHHTTSBHHH-HSG-------G-GHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCC---CEEEEcCCCEEEEECHHHHHHHCcCHHHHCCCCHHH-hcC-------C-hHHHHHHHH
Confidence 3567777788999999877 899999999999999999999999999999998743 332 2 445566677
Q ss_pred HhhhCCCCccee---------eeee---ecCCCCEEEEEEEEeeeecCCCCEEEEEeeeecccHHHHH
Q 037299 807 HNAFGGQDTEKF---------PFPL---FDRNGKYVQALLTANKRVNMEGQIVGAFCFLQIASPELQQ 862 (1111)
Q Consensus 807 ~~~~~~~~~~~~---------e~~~---~~~dG~~~~v~~~~~pi~d~~G~v~g~v~~~~DITer~~~ 862 (1111)
.+++..+.+... ++.. ...+|+.+++.++..|+.|.+|++.|++.+++|||++..+
T Consensus 83 ~~vl~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ti~Pl~d~~G~v~gv~~ii~DVTe~~~a 150 (152)
T 3mxq_A 83 DTALVIESSSFSSWEQKPHLLPFKSSRPVSGEEEQMYQNLEVIPIHSEDGTIEHVCLCVYDVTIQASQ 150 (152)
T ss_dssp HHHHHHTSCEEEECCSSSCSSCC----------CCEEEEEEEEEEECTTSCEEEEEEEEEEEECC---
T ss_pred HHHHhcCCceeeecccccccccccccCCCCCCCcEEEEEEEEEEEECCCCCEEEEEEEEEECCHHHhc
Confidence 777765544221 1111 2356778899999999999999999999999999987653
No 106
>1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L*
Probab=99.15 E-value=5.7e-11 Score=118.54 Aligned_cols=144 Identities=18% Similarity=0.141 Sum_probs=83.9
Q ss_pred EEEEEEEechhHHHHHHHHHhHHHHHHHHHhCCCCCCCCccccCCCCccccchhhhHHHhCCCccccccccccccccccc
Q 037299 711 GVCFVGQDVTDQKLVMDKFIHIQGDYKAIVHSPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGDIIGKMLVGEVFGSC 790 (1111)
Q Consensus 711 gvv~v~~DITerK~ae~~L~~se~~l~~i~~~~~~l~~~I~v~D~~g~ii~~N~a~~~l~G~~~eeliGk~l~~~v~~~~ 790 (1111)
...-+.+|++..++..+++.+.+.+++.++++++. +++++|.+|+++++|+++++++|++.++++|+.+...
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~i~~~d~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~----- 88 (167)
T 1v9y_A 17 RGSHMRQDAEVIMKLTDADNAADGIFFPALEQNMM---GAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDML----- 88 (167)
T ss_dssp -----------------------CCHHHHHHTCSS---EEEEECTTSBEEEECHHHHHHHSCCGGGTTTSBGGGG-----
T ss_pred hhHHHHhhHHHHHHHHHHHhhhhHHHHHHHHhCCC---CEEEECCCCcEEEECHHHHHHhCCCHHHHcCCChhhc-----
Confidence 34445678899999999999999999999999977 8999999999999999999999999999999876332
Q ss_pred cccCChhhHHHHHHHHHhhhCCCCc----ceeeeeeecCCCCEEEEEEEEeeeecCCCCEEEEEeeeecccHHHHHHHHH
Q 037299 791 CRLKGPDALTKFMIALHNAFGGQDT----EKFPFPLFDRNGKYVQALLTANKRVNMEGQIVGAFCFLQIASPELQQALTV 866 (1111)
Q Consensus 791 ~~l~~~~~~~~~~~~l~~~~~~~~~----~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~~~~DITer~~~e~el 866 (1111)
.+++....+...+.....+... +..++.+..++|..+|+.++..|+ +.+|.+. ++++++|||++++.+.++
T Consensus 89 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~g~~~-~~~~~~DiT~~~~~e~~l 163 (167)
T 1v9y_A 89 ---IPRDLRPAHPEYIRHNREGGKARVEGMSRELQLEKKDGSKIWTRFALSKV-SAEGKVY-YLALVRDASVEMAQKEQT 163 (167)
T ss_dssp ---SCGGGTTTHHHHHHHHHC----------CEEEEECTTSCEEEEEEEEEEE-EETTEEE-EEEEEEC-----------
T ss_pred ---cCccccchHHHHHHHHhhcCCCcccccceEEEEEcCCCcEEEEEEEEEEE-ecCCCEE-EEEEEecCcHHHHHHHHH
Confidence 2233333334445555555433 566788899999999999999998 5667664 899999999988777554
Q ss_pred H
Q 037299 867 Q 867 (1111)
Q Consensus 867 ~ 867 (1111)
+
T Consensus 164 ~ 164 (167)
T 1v9y_A 164 R 164 (167)
T ss_dssp -
T ss_pred H
Confidence 3
No 107
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A*
Probab=99.15 E-value=5.7e-11 Score=111.49 Aligned_cols=123 Identities=14% Similarity=0.140 Sum_probs=96.6
Q ss_pred hHHHHHHHHHhCCCCCCCCccccC---CCCccccchhhhHHHhCCCccccccccccccccccccccCChhhHHHHHHHHH
Q 037299 731 HIQGDYKAIVHSPNPLIPPIFASD---ENTCCSEWNTAMEKLTGWSRGDIIGKMLVGEVFGSCCRLKGPDALTKFMIALH 807 (1111)
Q Consensus 731 ~se~~l~~i~~~~~~l~~~I~v~D---~~g~ii~~N~a~~~l~G~~~eeliGk~l~~~v~~~~~~l~~~~~~~~~~~~l~ 807 (1111)
++++.++.++++++. +++++| .+|+++++|+++++++|++.++++|+++... .++.........+.
T Consensus 3 ~~~~~~~~~~~~~~~---~i~~~d~~d~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~--------~~~~~~~~~~~~~~ 71 (130)
T 2z6d_A 3 RVSQELKTALSTLQQ---TFVVSDATQPHCPIVYASSGFFTMTGYSSKEIVGRNCRFL--------QGPDTDKNEVAKIR 71 (130)
T ss_dssp ----CHHHHHHHTTC---EEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGG--------CCTTSCHHHHHHHH
T ss_pred hHHHHHHHHHHhccc---ceeeeeccCCCCcEEEecHHHHHHhCcCHHHHcCCChhhc--------cCCCCCchHHHHHH
Confidence 456678889999877 899999 9999999999999999999999999976322 22333344444555
Q ss_pred hhhCCCCcceeeeeeecCCCCEEEEEEEEeeeecCCCCEEEEEeeeecccHHHHHHH
Q 037299 808 NAFGGQDTEKFPFPLFDRNGKYVQALLTANKRVNMEGQIVGAFCFLQIASPELQQAL 864 (1111)
Q Consensus 808 ~~~~~~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~~~~DITer~~~e~ 864 (1111)
..+..+.....++.+.+++|+.+|+.++..|+.+.+|.+.|++++++|||++++++.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~~~~e~ 128 (130)
T 2z6d_A 72 DCVKNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDQGNTIKFIGMQVEVSKYTEGVN 128 (130)
T ss_dssp HHHHTTCCEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEECCTTC----
T ss_pred HHHHcCCcceeEEEEEcCCCcEEEEEEEEEEEECCCCCeeEEEEEEecchHHHHhhc
Confidence 566666677788889999999999999999999999999999999999999877664
No 108
>2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform CRA_B; HERG, PAS domain, voltage-gated potassium channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A
Probab=99.14 E-value=3.5e-10 Score=107.81 Aligned_cols=114 Identities=18% Similarity=0.219 Sum_probs=92.4
Q ss_pred HHHHHHhcCCcEEEEcC---CccEEeecHHHHHHcCCChhhhcCCcc-cccccchhhHHHHHHHHHHHHcCCCccceEEE
Q 037299 605 MVRLIETATAPIFAVDV---HGCVNGWNAKVAELTGLSVEEAMGKSL-VHDLVYKEYEEIVDNLLHHALKGEEDKNVEIK 680 (1111)
Q Consensus 605 l~~lie~~~~~I~~~D~---dG~I~~~N~a~~~l~G~~~eeliG~~~-~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~ 680 (1111)
+...+++++++++++|. +|+|+++|+++++++|++.++++|+++ ...+.+++........+...+..+.....++.
T Consensus 21 ~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (138)
T 2l0w_A 21 IIRKFEGQSRKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPRTQRRAAAQIAQALLGAEERKVEIA 100 (138)
T ss_dssp HHHHHTTTTSEEEEEESSSTTCBEEEECSHHHHHHSCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHTTCSSCEEEEEE
T ss_pred HHHHHhcCCCCEEEEecCCCCCEEEEeCHHHHHHhCCCHHHHcCCCCcccccCCcccchhHHHHHHHHHhhcCCceeEEE
Confidence 45567789999999999 999999999999999999999999984 43566665555555566666665554444443
Q ss_pred EEEeccccCCcEEEEEEEeEeeccCCCCEEEEEEEEEechhH
Q 037299 681 LRTFGAENRKKAVFVVVNACSSKDYTNNIVGVCFVGQDVTDQ 722 (1111)
Q Consensus 681 l~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DITer 722 (1111)
. .+++|..+|+.++..|+.+.+|.+.+++++++|||++
T Consensus 101 ~----~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~~ 138 (138)
T 2l0w_A 101 F----YRKDGSCFLCLVDVVPVKNEDGAVIMFILNFEVVMEK 138 (138)
T ss_dssp E----ECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEEEEEC
T ss_pred E----ECCCCCEEEEEEEEEEEeCCCCCEEEEEEEEEeccCC
Confidence 3 3678999999999999999999999999999999974
No 109
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}
Probab=99.14 E-value=2e-10 Score=114.74 Aligned_cols=123 Identities=13% Similarity=0.140 Sum_probs=91.9
Q ss_pred HHHHHHHHhcCCcEEEEcCCccEEeecHH---HHHHcCCChhhhcCCcccccccchhhHHHHHHHHHHHHcCCCccceEE
Q 037299 603 REMVRLIETATAPIFAVDVHGCVNGWNAK---VAELTGLSVEEAMGKSLVHDLVYKEYEEIVDNLLHHALKGEEDKNVEI 679 (1111)
Q Consensus 603 ~~l~~lie~~~~~I~~~D~dG~I~~~N~a---~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~ 679 (1111)
+++..++++++++|+++|.+|+|+|||++ +++++| ..++++|+++. ++.++...+.+...+ ..++.+.....++
T Consensus 19 ~~l~~IL~~~~~gI~~vD~~g~I~~~N~a~~~~~~i~g-~~~~~iGr~v~-~~~~~~~~~~v~~i~-~~l~~g~~~~~~~ 95 (151)
T 2qkp_A 19 EQANLILNHLPLEITFVNKDDIFQYYNDSVPAAEMVFK-RTPSQVGRNVE-LCHPPKVLDKVKKVF-ELLRNGQRDKVNM 95 (151)
T ss_dssp HHHHHHHHHSSSEEEEEETTSBEEEECCCSCGGGCSSC-CCGGGTTSBGG-GSSCHHHHHHHHHHH-HHHHTTSBSEEEE
T ss_pred HHHHHHHHhCCCceEEEcCCCeEEEEeCCCchhhhhcC-CCHHHcCCCHH-HhCCHHHHHHHHHHH-HHHHcCCccEEEE
Confidence 45789999999999999999999999999 999999 56789999998 776655544444444 4444444443333
Q ss_pred EEEEeccccCCcEEEEEEEeEeeccCCCCEEEEEEEEEechhHHHHHHHHHhHH
Q 037299 680 KLRTFGAENRKKAVFVVVNACSSKDYTNNIVGVCFVGQDVTDQKLVMDKFIHIQ 733 (1111)
Q Consensus 680 ~l~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DITerK~ae~~L~~se 733 (1111)
.+. ..+...++.++..|++|.+|++.|++.+++|||+.++.+.+.++-+
T Consensus 96 ~~~-----~~~~~~~v~v~~~Pi~d~~G~~~G~vev~~Dit~l~~le~~r~~~~ 144 (151)
T 2qkp_A 96 WFQ-----SERLGKFVYVTYAAVRDQAGDFQGVLEYVQDIKPFFELDSEFNRDE 144 (151)
T ss_dssp EEE-----ETTTTEEEEEEEEEEECTTCCEEEEEEEEEECGGGGGGGGC-----
T ss_pred EEe-----cCCCCeEEEEEEEEEECCCCCEEEEEEEEEECHHHHhhhhhhhccc
Confidence 332 1221356889999999999999999999999999998888766544
No 110
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6
Probab=99.07 E-value=1.1e-09 Score=99.30 Aligned_cols=105 Identities=18% Similarity=0.187 Sum_probs=82.9
Q ss_pred CcEEEEcC---CccEEeecHHHHHHcCCChhhhcCCc-ccccccchhhHHHHHHHHHHHHcCCCccceEEEEEEeccccC
Q 037299 614 APIFAVDV---HGCVNGWNAKVAELTGLSVEEAMGKS-LVHDLVYKEYEEIVDNLLHHALKGEEDKNVEIKLRTFGAENR 689 (1111)
Q Consensus 614 ~~I~~~D~---dG~I~~~N~a~~~l~G~~~eeliG~~-~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~l~~~~~~~d 689 (1111)
.+|+++|. +|+|+++|+++++++|++.++++|++ +...+.++.........+...+.++.....++.+. +++
T Consensus 2 ~~i~i~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 77 (110)
T 1byw_A 2 RKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPCTQRRAAAQIAQALLGAEERKVEIAFY----RKD 77 (110)
T ss_dssp CEEEEEETTSSSCBEEEECHHHHHHHTCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEEE----CTT
T ss_pred CCEEEEeccCCCCcEEEECHHHHHHhCCCHHHHccCCCccccccCCcCCHHHHHHHHHHHhcCCCceEEEEEE----cCC
Confidence 58899997 59999999999999999999999998 34245555544444455555565555444444433 679
Q ss_pred CcEEEEEEEeEeeccCCCCEEEEEEEEEechhH
Q 037299 690 KKAVFVVVNACSSKDYTNNIVGVCFVGQDVTDQ 722 (1111)
Q Consensus 690 G~~~~v~v~~~pi~d~~G~v~gvv~v~~DITer 722 (1111)
|..+|+.++..|+.+.+|.+.+++++++|||++
T Consensus 78 g~~~~~~~~~~~~~~~~g~~~~~~~~~~DiTe~ 110 (110)
T 1byw_A 78 GSCFLCLVDVVPVKNEDGAVIMFILNFEVVMEK 110 (110)
T ss_dssp SCEEEEEEEEEEEECTTCCEEEEEEEEEEEEEC
T ss_pred CCEEEEEEEEEEeecCCCCEEEEEEEEEeccCC
Confidence 999999999999999999999999999999974
No 111
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=99.06 E-value=4.1e-10 Score=109.37 Aligned_cols=115 Identities=17% Similarity=0.145 Sum_probs=81.2
Q ss_pred HHHHHHHHhcCCcEEEEcCCccEEeecHHHHHHcCCChhhhcCCcccccccchhhHHHHHHHHHHHHcCCCc---cceEE
Q 037299 603 REMVRLIETATAPIFAVDVHGCVNGWNAKVAELTGLSVEEAMGKSLVHDLVYKEYEEIVDNLLHHALKGEED---KNVEI 679 (1111)
Q Consensus 603 ~~l~~lie~~~~~I~~~D~dG~I~~~N~a~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~---~~~e~ 679 (1111)
+.++.++++++++|+++|.+|+|+++|+++++++||++++++|+++. +++++++...+...+......+.. .....
T Consensus 7 ~~l~~i~~~~~d~i~~~D~~g~I~~~N~aa~~l~G~~~~el~G~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (129)
T 3mfx_A 7 ETIELFIQHLTEAMILVNANGFIRSCNQRSAELLDCPQVSLKGQDWR-NFLTEHHQARYDNLLSHDVQLGTNCGQPVQHP 85 (129)
T ss_dssp HHHHHHHTTCSSEEEEEETTSBEEEECHHHHHHTTSCHHHHTTSBGG-GGBCTTCCGGGGCTTC----------CCSCEE
T ss_pred HHHHHHHhcCCceEEEECCCCEEEeEhHHHHHHHCcCHHHHcCCcHH-HHcChHhHHHHHHHHHHHHhcCcccccccCCC
Confidence 45788999999999999999999999999999999999999999998 888877655433333332222221 00111
Q ss_pred EEEEeccccCCcEEEEEEEeEeeccCCCCEEEEEEEEEechh
Q 037299 680 KLRTFGAENRKKAVFVVVNACSSKDYTNNIVGVCFVGQDVTD 721 (1111)
Q Consensus 680 ~l~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DITe 721 (1111)
.......++||+.+|+.++.+|+.+ ++. -++++++|...
T Consensus 86 ~~E~~~~rkdG~~~~velsis~i~~--~~~-~~v~~~~~~~~ 124 (129)
T 3mfx_A 86 AQETTLICASGKAKDVELSISYIPG--HEP-MFVMVMHDLEH 124 (129)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEECS--SSC-EEEEEEEEC--
T ss_pred ceEEEEEcCCCCEEEEEEEEEEecC--CCc-EEEEEEechhh
Confidence 2223334889999999999999983 332 36778888754
No 112
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.06 E-value=2.7e-10 Score=129.15 Aligned_cols=117 Identities=15% Similarity=0.174 Sum_probs=97.6
Q ss_pred HHhCCCCCCCCccccCC---CCccccchhhhHHHhCCCccccccccccccccccccccCChhhHHHHHHHHHhhhCCCCc
Q 037299 739 IVHSPNPLIPPIFASDE---NTCCSEWNTAMEKLTGWSRGDIIGKMLVGEVFGSCCRLKGPDALTKFMIALHNAFGGQDT 815 (1111)
Q Consensus 739 i~~~~~~l~~~I~v~D~---~g~ii~~N~a~~~l~G~~~eeliGk~l~~~v~~~~~~l~~~~~~~~~~~~l~~~~~~~~~ 815 (1111)
+++++++ +|+++|. +|++++||+++++++||++++++|++.. .+.++++.......+.+.+..+..
T Consensus 16 ~~~~~~~---~i~~~D~~~~~g~i~~~N~a~~~l~G~~~~el~G~~~~--------~l~~~~~~~~~~~~~~~~~~~~~~ 84 (332)
T 2wkq_A 16 TLERIEK---NFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNAR--------FLQGPETDRATVRKIRDAIDNQTE 84 (332)
T ss_dssp CGGGCCS---EEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGG--------GGCCTTCCHHHHHHHHHHHHTTCC
T ss_pred HhhcCCC---cEEEecCCCCCCCEEEeehHHHHHhCCCHHHHcCCCch--------hhcCCCCCHHHHHHHHHHHHcCCe
Confidence 4455554 8999999 9999999999999999999999999763 223344445555566667777778
Q ss_pred ceeeeeeecCCCCEEEEEEEEeeeecCCCCEEEEEeeeecccHHHHHHHHH
Q 037299 816 EKFPFPLFDRNGKYVQALLTANKRVNMEGQIVGAFCFLQIASPELQQALTV 866 (1111)
Q Consensus 816 ~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~~~~DITer~~~e~el 866 (1111)
+..++++.+++|+.+|+.++..|+.|.+|.+.|++++++|||++++.+.+.
T Consensus 85 ~~~e~~~~~~dG~~~~~~~~~~pi~d~~g~~~~~v~~~~DITe~k~~e~~~ 135 (332)
T 2wkq_A 85 VTVQLINYTKSGKKFWNLFHLQPMRDQKGDVQYFIGVQLDGTEHVRDAAER 135 (332)
T ss_dssp EEEEEEEECTTCCEEEEEEEEEEEECTTSCEEEEEEEEEEESSCCCHHHHH
T ss_pred eEEEEEEEcCCCCEEEEeeEEEEeEcCCCCEEEEEEEeccCchhhhhhhhc
Confidence 889999999999999999999999999999999999999999987766443
No 113
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.05 E-value=5.4e-10 Score=128.45 Aligned_cols=110 Identities=8% Similarity=-0.026 Sum_probs=99.4
Q ss_pred cCCcEEEEcCCccEEeecHHHHHHcCCChhhhcCCcccccccchhhHHHHHHHHHHHHcCCCccceEEEEEEeccccCCc
Q 037299 612 ATAPIFAVDVHGCVNGWNAKVAELTGLSVEEAMGKSLVHDLVYKEYEEIVDNLLHHALKGEEDKNVEIKLRTFGAENRKK 691 (1111)
Q Consensus 612 ~~~~I~~~D~dG~I~~~N~a~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~l~~~~~~~dG~ 691 (1111)
....++..|.+|+++++|++++.++||+++|++|+++. +++||+|.+.+...+..++.++.....++++. +++|+
T Consensus 250 ~~~f~~~~~~dg~~~~vn~~~~~ilGY~~eEl~g~~~~-~~iHpdD~~~~~~~~~~~l~~g~~~~~eyR~~----~kdG~ 324 (361)
T 4f3l_A 250 NEEFTSRHSLEWKFLFLDHRAPPIIGYLPFEVLGTSGY-DYYHVDDLENLAKCHEHLMQYGKGKSCYYRFL----TKGQQ 324 (361)
T ss_dssp CCEEEEEECTTSBEEEECTTSHHHHCCCHHHHTTSBGG-GGBCHHHHHHHHHHHHHHHHHSEEECCCEEEE----CTTSE
T ss_pred cceeEEEEcCCceEEEECChhhhhhCcCHHHHcCCCHH-HeECHHHHHHHHHHHHHHHhCCCcceEEEEEE----ecCCC
Confidence 35677888999999999999999999999999999998 99999999999998998888776666667766 78999
Q ss_pred EEEEEEEeEeeccC-CCCEEEEEEEEEechhHHHHH
Q 037299 692 AVFVVVNACSSKDY-TNNIVGVCFVGQDVTDQKLVM 726 (1111)
Q Consensus 692 ~~~v~v~~~pi~d~-~G~v~gvv~v~~DITerK~ae 726 (1111)
++|+..++.|++|. +|++.+++++.+|||+++..+
T Consensus 325 ~vWv~~~~~~v~~~~~g~~~~iv~~~~dITe~~~~~ 360 (361)
T 4f3l_A 325 WIWLQTHYYITYHQWNSRPEFIVCTHTVVSYAEVRA 360 (361)
T ss_dssp EEEEEEEEEEEECTTTCCEEEEEEEEEECCHHHHHH
T ss_pred EEEEEEEEEEEEcCCCCCeeEEEEEEEECChhHhhc
Confidence 99999999999998 899999999999999998765
No 114
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}
Probab=99.04 E-value=1.1e-09 Score=104.39 Aligned_cols=106 Identities=15% Similarity=0.135 Sum_probs=78.3
Q ss_pred HHHHHHHHHhcCCcEEEEcCCccEEeecHHHHHHcC------------CChhhhcCCcccccccchhhHHHHHHHHHHHH
Q 037299 602 AREMVRLIETATAPIFAVDVHGCVNGWNAKVAELTG------------LSVEEAMGKSLVHDLVYKEYEEIVDNLLHHAL 669 (1111)
Q Consensus 602 ~~~l~~lie~~~~~I~~~D~dG~I~~~N~a~~~l~G------------~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l 669 (1111)
..+++.+++++++||+++|.+|+|+++|+++++++| +++++++|+++. ++++... .....+.. .
T Consensus 4 ~~rl~~il~~~~~gviv~D~~g~I~~~N~a~~~llg~~~~~i~~~~~g~~~~~~~G~~~~-~~~~~~~--~~~~~~~~-~ 79 (121)
T 4hi4_A 4 MARIASALDNVSANVMIADNDLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANID-VFHKNPA--HQRHLLAN-L 79 (121)
T ss_dssp HHHHHHHHTTSSSEEEEEETTCBEEEECHHHHHHHHHTHHHHHHHCTTCCGGGCTTCBGG-GGCSSHH--HHHHHHHH-C
T ss_pred HHHHHHHHhcCCccEEEEcCCCeEEEecHHHHHHHHHHHHHHHHhcCCCChHHhcCCCHH-HhcCCHH--HHHHHHhC-c
Confidence 357889999999999999999999999999999996 899999999987 5554321 11222222 1
Q ss_pred cCCCccceEEEEEEeccccCCcEEEEEEEeEeeccCCCCEEEEEEEEEechhH
Q 037299 670 KGEEDKNVEIKLRTFGAENRKKAVFVVVNACSSKDYTNNIVGVCFVGQDVTDQ 722 (1111)
Q Consensus 670 ~~~~~~~~e~~l~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DITer 722 (1111)
. .. .+..+. .+| .++.++..|++|.+|++.|++++++|||++
T Consensus 80 ~--~~--~~~~~~-----~~~--~~~~~~~~pi~~~~g~~~g~v~~~~DiTee 121 (121)
T 4hi4_A 80 T--GV--HKAELN-----LGG--RRFSLDVVPVFNDANARLGSAVQWTDRTEE 121 (121)
T ss_dssp S--SC--EEEEEE-----ETT--EEEEEEEEEEECTTSCEEEEEEEEEECC--
T ss_pred C--CC--cEEEEE-----ECC--EEEEEEEEEEECCCCCEEEEEEEEEEecCC
Confidence 1 11 222222 123 356889999999999999999999999984
No 115
>3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis}
Probab=99.04 E-value=6.6e-11 Score=122.18 Aligned_cols=123 Identities=10% Similarity=0.046 Sum_probs=90.1
Q ss_pred HhHHHHHHHHHhCCCCCCCCccccC-CCCccccchhhhHHHhCCCccccccccccccccccccccCChhhHHHHHHHHHh
Q 037299 730 IHIQGDYKAIVHSPNPLIPPIFASD-ENTCCSEWNTAMEKLTGWSRGDIIGKMLVGEVFGSCCRLKGPDALTKFMIALHN 808 (1111)
Q Consensus 730 ~~se~~l~~i~~~~~~l~~~I~v~D-~~g~ii~~N~a~~~l~G~~~eeliGk~l~~~v~~~~~~l~~~~~~~~~~~~l~~ 808 (1111)
..++++|+.++++++. +|+++| .+|+++++|+++++++|++ +++|+++.+.+ + +.....+...+.+
T Consensus 33 ~~~~~~l~~l~~~~~~---~i~~~d~~~g~i~~~N~a~~~l~G~~--~~~G~~~~~~~-~-------~~~~~~~~~~~~~ 99 (185)
T 3kx0_X 33 VGAAEDVRRIFEHIPA---ILVGLEGPDHRFVAVNAAYRGFSPLL--DTVGQPAREVY-P-------ELEGQQIYEMLDR 99 (185)
T ss_dssp TCCHHHHHHHHHHCSS---EEEEEETTTTEEEEECHHHHHHCCCC--SCTTSBHHHHC-T-------TSCSSSSHHHHHH
T ss_pred hhhHHHHHHHHhcCCc---eEEEEECCCcEEEEEcHHHHHHcCCc--cccCCcHHHHC-C-------chhhhhHHHHHHH
Confidence 5667889999999977 899999 9999999999999999999 89999864333 2 1111122234445
Q ss_pred hhCCCCcc-eeeeee--ecCC--CCEEEEEEEEeeeecCCCCEEEEEeeeecccHHHHHHHH
Q 037299 809 AFGGQDTE-KFPFPL--FDRN--GKYVQALLTANKRVNMEGQIVGAFCFLQIASPELQQALT 865 (1111)
Q Consensus 809 ~~~~~~~~-~~e~~~--~~~d--G~~~~v~~~~~pi~d~~G~v~g~v~~~~DITer~~~e~e 865 (1111)
++..+... ..++.+ ..++ |..+|+.++..|+.+.+|.+.|++++++|||++++++.+
T Consensus 100 ~~~~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~pi~~~~g~~~g~~~~~~DITerk~~e~~ 161 (185)
T 3kx0_X 100 VYQTGEPQSGSEWRLQTDYDGSGVEERYFDFVVTPRRRADGSIEGVQLIVDDVTSRVRARQA 161 (185)
T ss_dssp HHHHCCCEEEEEEEEC--------CCEEEEEEEEEEECTTSCEEEEEEEEEECHHHHTTCC-
T ss_pred HHHcCCcccccceeEEeeccCCCCccEEEEEEEEEEECCCCCEEEEEEEEEeCCHHHHHHHH
Confidence 55333333 222333 3223 778999999999999999999999999999999988765
No 116
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens}
Probab=99.03 E-value=5.9e-10 Score=105.36 Aligned_cols=110 Identities=9% Similarity=0.030 Sum_probs=90.9
Q ss_pred HHhCCCCCCCCccccCCCCccccchhhhHHHhCCCccccccccccccccccccccCChhhHHHHHHHHHhhhCC-CCcce
Q 037299 739 IVHSPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGDIIGKMLVGEVFGSCCRLKGPDALTKFMIALHNAFGG-QDTEK 817 (1111)
Q Consensus 739 i~~~~~~l~~~I~v~D~~g~ii~~N~a~~~l~G~~~eeliGk~l~~~v~~~~~~l~~~~~~~~~~~~l~~~~~~-~~~~~ 817 (1111)
+++++++ +|+..|.+|+++++|+++++++||++++++|+.+. .+.+|++...+...+.+.+.+ .....
T Consensus 8 ~~~~~~~---~i~~~d~~g~i~~~N~~~~~~~G~~~~el~g~~~~--------~~~~p~d~~~~~~~~~~~~~~~~~~~~ 76 (121)
T 2kdk_A 8 INVKPTE---FITRFAVNGKFVYVDQRATAILGYLPQELLGTSCY--------EYFHQDDHNNLTDKHKAVLQSKEKILT 76 (121)
T ss_dssp CCCCSSE---EEEEECTTSBEEEECTHHHHHTCCCTTTSBTSBTT--------TTBCSSSHHHHHHHHHHHHTSSSCEEE
T ss_pred cccCCcc---EEEEECCCeeEEEEChhHHHHHCCCHHHHcCCcHH--------HeeCHHHHHHHHHHHHHHHhCCCCCcc
Confidence 3444444 79999999999999999999999999999998753 345688888777777777765 44568
Q ss_pred eeeeeecCCCCEEEEEEEEeeeecCC-CCEEEEEeeeecccHH
Q 037299 818 FPFPLFDRNGKYVQALLTANKRVNME-GQIVGAFCFLQIASPE 859 (1111)
Q Consensus 818 ~e~~~~~~dG~~~~v~~~~~pi~d~~-G~v~g~v~~~~DITer 859 (1111)
.++++.+++|+++|+..+..|+.|.+ +.+.+++++.+||++.
T Consensus 77 ~e~r~~~~dG~~~~~~~~~~~~~d~~~~~~~~~v~~~~~i~~~ 119 (121)
T 2kdk_A 77 DSYKFRAKDGSFVTLKSQWFSFTNPDTKELEYIVSVNTLVLGH 119 (121)
T ss_dssp EEEEEECSSSCEEEEEEEEEEEECCSSSCEEEEEEEEECCSSC
T ss_pred EEEEEEEcCCCEEEEEEEEEEEECCCCCeeeEEEEEEEecccc
Confidence 89999999999999999999999886 5677788899988863
No 117
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=99.02 E-value=9e-11 Score=111.46 Aligned_cols=114 Identities=13% Similarity=0.107 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEcCCccEEeecHHHHHHcCCChhhhcCCcccccccchhhHHHHHHHHHHHHcCCCcc
Q 037299 596 DELSSVAREMVRLIETATAPIFAVDVHGCVNGWNAKVAELTGLSVEEAMGKSLVHDLVYKEYEEIVDNLLHHALKGEEDK 675 (1111)
Q Consensus 596 ~eL~~~~~~l~~lie~~~~~I~~~D~dG~I~~~N~a~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~ 675 (1111)
..+...+...+.++++++++|+++|.+|+|+++|+++++++|+++++++|+++. +++++.....+...+..++..+...
T Consensus 5 ~~~~~~~~~~~~il~~~~~~i~~~D~~g~i~~~N~a~~~l~g~~~~e~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (118)
T 3fg8_A 5 HHHHHHSSGRENLYFQGGLGFMALDEDLRIIYVNSGCLRHVRRSRDELLGRVVT-EVLPETQGSYFDALCRKVLATGREQ 83 (118)
T ss_dssp --------CCCCSSSCTTCEEEEECTTCBEEEECHHHHHHHTCCHHHHTTSBHH-HHCGGGTTSHHHHHHHHHHHHCCCE
T ss_pred cccccccchHHHHHhhCCceEEEECCCCeEEEECHHHHHHhCCCHHHHcCCcHH-HHcCccchHHHHHHHHHHHHcCCce
Confidence 345556667788999999999999999999999999999999999999999998 7777766666666777777655543
Q ss_pred ceEEEEEEeccccCCcEEEEEEEeEeeccCCCCEEEEEEEEEechhH
Q 037299 676 NVEIKLRTFGAENRKKAVFVVVNACSSKDYTNNIVGVCFVGQDVTDQ 722 (1111)
Q Consensus 676 ~~e~~l~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DITer 722 (1111)
..+++. .. .+| .|+.++..|+.+ |++++++|||++
T Consensus 84 ~~~~~~--~~--~~g--~~~~~~~~p~~~------g~v~~~~DITer 118 (118)
T 3fg8_A 84 QTRVDS--LY--SPG--MTIEVTAAADSG------ALVVHFRDVTAE 118 (118)
T ss_dssp EEEEEC--SS--STT--CEEEEEEEEETT------EEEEEEEECSCC
T ss_pred EEEEEE--Ec--CCC--eEEEEEEEEcCC------cEEEEEEeccCC
Confidence 322122 11 244 678888888865 488999999975
No 118
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=99.02 E-value=1.1e-09 Score=103.35 Aligned_cols=94 Identities=13% Similarity=0.075 Sum_probs=69.7
Q ss_pred HHHHhcCCcEEEEcCCccEEeecHHHHHHcCCChhhhcCCcccccccchhhHHHHHHHHHHHHcCCCccceEEEEEEecc
Q 037299 607 RLIETATAPIFAVDVHGCVNGWNAKVAELTGLSVEEAMGKSLVHDLVYKEYEEIVDNLLHHALKGEEDKNVEIKLRTFGA 686 (1111)
Q Consensus 607 ~lie~~~~~I~~~D~dG~I~~~N~a~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~l~~~~~ 686 (1111)
.++++++++|+++|.+|+|+|+|+++++++||+++|++|+++. +++||++.+.+...+. ........++++.
T Consensus 3 ~lle~~~d~i~v~d~~G~i~yvn~~~~~~lGy~~~el~G~~~~-~~ihp~D~~~~~~~~~---~~~~~~~~e~r~~---- 74 (111)
T 2vlg_A 3 FPLQTKTDIHAVLASNGRIIYISANSKLHLGYLQGEMIGSFLK-TFLHEEDQFLVESYFY---NEHHLMPCTFRFI---- 74 (111)
T ss_dssp ------CCEEEEECTTSBEEEECTTHHHHHSCCHHHHTTSBGG-GGBCGGGHHHHHHHHH---CSCCSSCEEEEEE----
T ss_pred chhhcCCCEEEEEcCCCeEEEEChHHHHHhCCCHHHHcCCcHH-HeECHhHHHHHHHHHh---ccCCCccEEEEEE----
Confidence 5789999999999999999999999999999999999999998 8999999988766553 2222233444443
Q ss_pred ccCCcEEEEEEEeEeeccCCCC
Q 037299 687 ENRKKAVFVVVNACSSKDYTNN 708 (1111)
Q Consensus 687 ~~dG~~~~v~v~~~pi~d~~G~ 708 (1111)
++||+.+|+.++..++++.++.
T Consensus 75 ~kdG~~~wve~~~~~v~~~~~~ 96 (111)
T 2vlg_A 75 KKDHTIVWVEAAVEIVTTRAER 96 (111)
T ss_dssp CTTSCEEEEEEEEEEC------
T ss_pred cCCCCEEEEEEEEEEEecccCC
Confidence 8999999999999999987653
No 119
>3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=99.01 E-value=1.2e-09 Score=117.50 Aligned_cols=121 Identities=12% Similarity=0.147 Sum_probs=89.0
Q ss_pred HHHHHHHHHhCCCCCCCCccccCCCCccccchhhhHHHh------------CCCccccccccccccccccccccCChhhH
Q 037299 732 IQGDYKAIVHSPNPLIPPIFASDENTCCSEWNTAMEKLT------------GWSRGDIIGKMLVGEVFGSCCRLKGPDAL 799 (1111)
Q Consensus 732 se~~l~~i~~~~~~l~~~I~v~D~~g~ii~~N~a~~~l~------------G~~~eeliGk~l~~~v~~~~~~l~~~~~~ 799 (1111)
...+++.++++++. ||+++|.+|+|+++|+++++++ ||++++++|+++.. +++ .+...
T Consensus 20 e~~~l~~iLd~~~~---~vii~D~~g~I~~~N~a~~~ll~~~~~~~~~~l~G~~~~eliG~~~~~-~~~------~~~~~ 89 (233)
T 3vol_A 20 HMARIKSALDNVSA---NVMIADNDLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDV-FHK------NPAHQ 89 (233)
T ss_dssp HHHHHHHHHTTSSS---EEEEEETTSBEEEECHHHHHHHHHTHHHHHTTCTTCCTTSCTTCBGGG-GSS------SHHHH
T ss_pred HHHHHHHHHhcCCC---cEEEECCCCcEEEecHHHHHHHHHHHHHHHhhcCCCCHHHHcCCCHHH-HcC------CHHHH
Confidence 34667888888876 8999999999999999999998 89999999998632 221 12222
Q ss_pred HHHHHHHHhhhCCCCcceeeeeeecCCCCEEEEEEEEeeeecCCCCEEEEEeeeecccHHHHHHHHHHHHHHHH
Q 037299 800 TKFMIALHNAFGGQDTEKFPFPLFDRNGKYVQALLTANKRVNMEGQIVGAFCFLQIASPELQQALTVQRQQEKK 873 (1111)
Q Consensus 800 ~~~~~~l~~~~~~~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~~~~DITer~~~e~el~~~~e~~ 873 (1111)
. .+...+.+ .+..++. .+|. |+.++..|++|.+|++.|++++++|||++++.+.+++...++.
T Consensus 90 ~----~~~~~~~~--~~~~~~~---~~g~--~~~~~~~Pi~d~~G~~~g~v~~~~DITe~~~~e~ei~~l~~a~ 152 (233)
T 3vol_A 90 R----HLLANLTG--VHKAELN---LGGR--RFSLDVVPVFNDANERLGSAVQWTDRTEEHRAEQEVSQLVQAA 152 (233)
T ss_dssp H----HHHHTCCS--CEEEEEE---ETTE--EEEEEEEEEECTTCCEEEEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred H----HHHHhccc--ceeEEEE---ECCE--EEEEEEEEEECCCCCEEEEEEEEehhhHHHHHHHHHHHHHHHH
Confidence 1 12222222 2333332 3453 6789999999999999999999999999999988776655443
No 120
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.00 E-value=1e-09 Score=127.20 Aligned_cols=109 Identities=10% Similarity=0.030 Sum_probs=94.7
Q ss_pred hcCCcEEEEcCCccEEeecHHHHHHcCCChhhhcCCcccccccchhhHHHHHHHHHHHHcCCCc-cceEEEEEEeccccC
Q 037299 611 TATAPIFAVDVHGCVNGWNAKVAELTGLSVEEAMGKSLVHDLVYKEYEEIVDNLLHHALKGEED-KNVEIKLRTFGAENR 689 (1111)
Q Consensus 611 ~~~~~I~~~D~dG~I~~~N~a~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~-~~~e~~l~~~~~~~d 689 (1111)
...+.++..|.+|+++|+|++++.++||+++|++|+++. +++||+|.+.+...+..++.++.. ...+++++ +++
T Consensus 276 ~~~~fi~~~~~dg~~~~vn~~~~~ilGY~~eEl~g~~~~-~~iHpdD~~~~~~~~~~~l~~~~~~~~~eyR~~----~kd 350 (387)
T 4f3l_B 276 KSMEYVSRHAIDGKFVFVDQRATAILAYLPQELLGTSCY-EYFHQDDIGHLAECHRQVLQTREKITTNCYKFK----IKD 350 (387)
T ss_dssp CCCEEEEEECTTSBEEEECTHHHHHHCCCHHHHTTSBGG-GTBCHHHHHHHHHHHHHHTTCSSCEECCCEEEE----CTT
T ss_pred CCceEEEEECCCCEEEEECCCcccccCCCHHHHcCCcHH-HeeCHHHHHHHHHHHHHHHhcCCCeeeEEEEEE----ccC
Confidence 466788899999999999999999999999999999999 999999999999999998876543 44567766 789
Q ss_pred CcEEEEEEEeEeeccC-CCCEEEEEEEEEechhHHH
Q 037299 690 KKAVFVVVNACSSKDY-TNNIVGVCFVGQDVTDQKL 724 (1111)
Q Consensus 690 G~~~~v~v~~~pi~d~-~G~v~gvv~v~~DITerK~ 724 (1111)
|+++|+..++.+++|. +|++.+++++.+|||+||+
T Consensus 351 G~~vWv~~~~~~~~~~~~g~~~~ivg~~~dIT~Rk~ 386 (387)
T 4f3l_B 351 GSFITLRSRWFSFMNPWTKEVEYIVSTNTVVLANVL 386 (387)
T ss_dssp SCEEEEEEEEEEEEETTTTEEEEEEEEEEECC----
T ss_pred CCEEEEEEEEEEEECCCCCCEEEEEEEEEEcchhhc
Confidence 9999999999999987 8999999999999999984
No 121
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}
Probab=98.99 E-value=3.8e-10 Score=106.69 Aligned_cols=118 Identities=14% Similarity=0.137 Sum_probs=86.0
Q ss_pred HHHHhCCCCCCCCccccCCCCccccchhhhHHHhCCCccccccccccccccccccccCChhhHHHHHHHHHhhhCCCCcc
Q 037299 737 KAIVHSPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGDIIGKMLVGEVFGSCCRLKGPDALTKFMIALHNAFGGQDTE 816 (1111)
Q Consensus 737 ~~i~~~~~~l~~~I~v~D~~g~ii~~N~a~~~l~G~~~eeliGk~l~~~v~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ 816 (1111)
+.+++++++ +|+++|.+|+++++|+++++++|+++++++|+++... .++++...+...+.....++..
T Consensus 2 ~~l~~~~~~---~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~- 69 (126)
T 3mjq_A 2 KNFLETIED---MILIINREGRLLYANTAVPKKLGYTHEELMSMHILTI--------TSAGKMAEGEKILAELFAGKKE- 69 (126)
T ss_dssp CTTGGGCSS---EEEEEETTSBEEEECTHHHHHHSCCHHHHHHSBHHHH--------HCTTCHHHHHHHHHHHHHTCCS-
T ss_pred hhHHhhCCc---eEEEEeCCCcEEEEcHHHHHHHCCCHHHHcCCCHHHH--------cCchhHHHHHHHHHHHHhCCCc-
Confidence 346666666 8999999999999999999999999999999876332 2355555666667776666655
Q ss_pred eeeeeeecCCCCEEEEEEEEeeeecCCCCEEEEEeeeecccHHHHHHHHHHH
Q 037299 817 KFPFPLFDRNGKYVQALLTANKRVNMEGQIVGAFCFLQIASPELQQALTVQR 868 (1111)
Q Consensus 817 ~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~~~~DITer~~~e~el~~ 868 (1111)
..++.+.+++|..+|+.++..+... +...+++++++|||++++++.+...
T Consensus 70 ~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~DITe~k~a~~~~~~ 119 (126)
T 3mjq_A 70 SLPLSLEKKEGTSIPAKARIWQGKW--HNEPCLFAIIKDLSKEERASSPPFL 119 (126)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEES--SSSEEEEEEEEECC-----------
T ss_pred eeEEEEEccCCCEEEEEEEEEeeeE--CCceEEEEEEEechHHHHhhcccch
Confidence 7888899999999999999987664 3356789999999999888765443
No 122
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B*
Probab=98.98 E-value=1.3e-09 Score=107.13 Aligned_cols=107 Identities=13% Similarity=0.086 Sum_probs=84.2
Q ss_pred HHHHHhcCCcEEEEc---CCccEEeecHHHHHHcCCChhhhcCCcccccccchhh-----------HHHHHHHHHHHHcC
Q 037299 606 VRLIETATAPIFAVD---VHGCVNGWNAKVAELTGLSVEEAMGKSLVHDLVYKEY-----------EEIVDNLLHHALKG 671 (1111)
Q Consensus 606 ~~lie~~~~~I~~~D---~dG~I~~~N~a~~~l~G~~~eeliG~~~~~~l~~~~~-----------~~~~~~~l~~~l~~ 671 (1111)
..++++. ++|+++| .+|+|+++|+++++++||+.++++|+++. .+++++. .......+...+..
T Consensus 29 ~~~~~~~-~~i~~~d~~d~~g~i~~~N~a~~~l~G~~~~el~g~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (149)
T 3d72_A 29 LGPVDTS-VALILCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRNCR-FLQSPDGMVKPKSTRKYVDSNTINTMRKAIDR 106 (149)
T ss_dssp CCSCCTT-SCEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGG-GGGSTTSCCCTTCCCSSSCHHHHHHHHHHHHH
T ss_pred HHhhcCC-ccEEEEeccCCCCcEEEECHHHHHHHCcCHHHHcCCChh-HhCCccccccccccccccChHHHHHHHHHHHC
Confidence 3567775 9999999 79999999999999999999999999987 7777662 33333344444444
Q ss_pred CCccceEEEEEEeccccCCcEEEEEEEeEeeccCCCCEEEEEEEEEe
Q 037299 672 EEDKNVEIKLRTFGAENRKKAVFVVVNACSSKDYTNNIVGVCFVGQD 718 (1111)
Q Consensus 672 ~~~~~~e~~l~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~D 718 (1111)
+.....++.+ .+++|..+|+.++..|++|.+|++.+++++++|
T Consensus 107 ~~~~~~e~~~----~~~dG~~~~~~~~~~~i~~~~g~~~~~v~~~~D 149 (149)
T 3d72_A 107 NAEVQVEVVN----FKKNGQRFVNFLTMIPVRDETGEYRYSMGFQCE 149 (149)
T ss_dssp TCCEEEEEEE----ECTTCCEEEEEEEEEEEECTTSSEEEEEEECCC
T ss_pred CCceEEEEEE----ECCCCCEEEEEEEEEEEEcCCCCEEEEEEEEeC
Confidence 4444444443 378999999999999999999999999999877
No 123
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=98.93 E-value=1.3e-09 Score=101.70 Aligned_cols=114 Identities=11% Similarity=0.001 Sum_probs=83.6
Q ss_pred HHHHHhHHHHHHHHHhCCCCCCCCccccCCCCccccchhhhHHHhCCCccccccccccccccccccccCChhhHHHHHHH
Q 037299 726 MDKFIHIQGDYKAIVHSPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGDIIGKMLVGEVFGSCCRLKGPDALTKFMIA 805 (1111)
Q Consensus 726 e~~L~~se~~l~~i~~~~~~l~~~I~v~D~~g~ii~~N~a~~~l~G~~~eeliGk~l~~~v~~~~~~l~~~~~~~~~~~~ 805 (1111)
+.++.+..+.++.+++++++ +|+++|.+|+++++|+++++++||++++++|+++...+ +... +... ..
T Consensus 5 ~~~~e~~~~~~~~~~~~~~~---~i~~~d~~g~i~~~N~~~~~l~G~~~~el~g~~~~~~~-~~~~----~~~~----~~ 72 (118)
T 3olo_A 5 NIQSELEFKFAHYLINNAVE---ASFCLGDNWQFLYVNDATCRMTEYSREQLLSMNLQDID-VDFA----LHDW----EE 72 (118)
T ss_dssp --CHHHHHHHHHHHHHHCSS---EEEEECTTSBEEEECHHHHHHHCCCHHHHTTCBGGGTB-TTGG----GSCH----HH
T ss_pred HHHHHHHHHHHHHHHhcCCc---eEEEECCCCcEEEEHHHHHHHHCCCHHHHhCCChhhcc-cccC----HHHH----HH
Confidence 33445555667889999877 89999999999999999999999999999999864322 2111 1111 11
Q ss_pred HHhhhCCCCcceeeeeeecCCCCEEEEEEEEeeeecCCCCEEEEEeeeeccc
Q 037299 806 LHNAFGGQDTEKFPFPLFDRNGKYVQALLTANKRVNMEGQIVGAFCFLQIAS 857 (1111)
Q Consensus 806 l~~~~~~~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~~~~DIT 857 (1111)
+ ..+....++..+.+++|+.+|+.++..++.+.++ .+++++++|||
T Consensus 73 ~----~~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~DIT 118 (118)
T 3olo_A 73 I----RQKNNYTFKTRYRSQSGRIFLVEMSLTFLEDQER--RFSCVFVREKS 118 (118)
T ss_dssp H----HHHSEEEEEEEEECTTCCEEEEEEEEEEEEETTE--EEEEEEEEEC-
T ss_pred H----HhcCcEEEEEEEEccCCCEEEEEEEEEEEEECCc--cEEEEEEEeCC
Confidence 1 1133567888999999999999999999876543 35678999997
No 124
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.92 E-value=3.1e-09 Score=99.38 Aligned_cols=105 Identities=10% Similarity=0.107 Sum_probs=79.3
Q ss_pred HHHHHhcCCcEEEEcCCccEEeecHHHHHHcCCChhhhcCCcccccccchhhHHHHHHHHHHHHcCCCc-cceEEEEEEe
Q 037299 606 VRLIETATAPIFAVDVHGCVNGWNAKVAELTGLSVEEAMGKSLVHDLVYKEYEEIVDNLLHHALKGEED-KNVEIKLRTF 684 (1111)
Q Consensus 606 ~~lie~~~~~I~~~D~dG~I~~~N~a~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~-~~~e~~l~~~ 684 (1111)
..+++++++||+++|.+|+|+++|+++++++|++.++++|+++. +++++... ....+..++..+.. ...++.+
T Consensus 10 ~~il~~~~~~i~~~D~~g~I~~~N~aa~~l~g~~~~~~~g~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--- 83 (115)
T 3b33_A 10 SAILNNMVTATLILDDGLAIRYANPAAELLFSQSAKRIVEQSLS-QLIQHASL--DLALLTQPLQSGQSITDSDVTF--- 83 (115)
T ss_dssp HHHHHHCSSEEEEECTTCBEEEECHHHHHHTTSCHHHHTTCBHH-HHCSEEEC--CTHHHHHHHHHCCCEEEEEEEE---
T ss_pred HHHHhhcCceEEEECCCCcEEEECHHHHHHhCCCHHHHhCCCHH-HHhCccch--hhHHHHHHHHcCCcccCCceEE---
Confidence 45899999999999999999999999999999999999999987 66554321 11233344433332 2223332
Q ss_pred ccccCCcEEEEEEEeEeeccCCCCEEEEEEEEEech
Q 037299 685 GAENRKKAVFVVVNACSSKDYTNNIVGVCFVGQDVT 720 (1111)
Q Consensus 685 ~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DIT 720 (1111)
. ++|..+|+.++..|+.+ +|. .|++.+++||+
T Consensus 84 -~-~~g~~~~~~~~~~pi~~-~g~-~~~l~~~~Di~ 115 (115)
T 3b33_A 84 -V-VDGRPLMLEVTVSPITW-QRQ-LMLLVEMRKID 115 (115)
T ss_dssp -E-ETTEEEEEEEEEEEEEE-TTE-EEEEEEEEEC-
T ss_pred -e-cCCCEEEEEEEEEEeec-CCc-eEEEEEEEeCC
Confidence 1 47889999999999999 776 68999999985
No 125
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=98.90 E-value=2.2e-10 Score=141.35 Aligned_cols=121 Identities=9% Similarity=-0.045 Sum_probs=98.7
Q ss_pred HhHHHHHHHHHhCCCCCCCCccccCCCCccccchhhhHHHhCCCccccccccccccccccccccCChhhHHHHHHHHHhh
Q 037299 730 IHIQGDYKAIVHSPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGDIIGKMLVGEVFGSCCRLKGPDALTKFMIALHNA 809 (1111)
Q Consensus 730 ~~se~~l~~i~~~~~~l~~~I~v~D~~g~ii~~N~a~~~l~G~~~eeliGk~l~~~v~~~~~~l~~~~~~~~~~~~l~~~ 809 (1111)
++...++..++++.+. +|+++|.+|++++||+++++++||+.++++|+.... ..++++...+......
T Consensus 514 ~e~~~~~~~lle~a~~---~i~~~D~~grI~~~N~a~~~l~G~s~~e~~g~~~l~--------~~~~~~~~~~~~i~~~- 581 (635)
T 4eho_A 514 REQVPQASSQVHASMQ---PVLITDAEGRILLMNDSFRDMLPAGSPSAVHLDDLA--------GFFVESNDFLRNVAEL- 581 (635)
T ss_dssp HHTSSSHHHHHHHCSS---CCEEEETTCCEEEECHHHHTTSCSSCCCCCSSGGGT--------TSSSSCTHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhCCC---cEEEECCCCeEeeHHHHHHHHHCcChHHHcCcchhh--------ccCCCCHHHHHHHHHH-
Confidence 3334467778888876 899999999999999999999999999999986532 3335555555444444
Q ss_pred hCCCCcceeeeeeecCCCCEEEEEEEEeeeecCCCCEEEEEeeeecccHHHHH
Q 037299 810 FGGQDTEKFPFPLFDRNGKYVQALLTANKRVNMEGQIVGAFCFLQIASPELQQ 862 (1111)
Q Consensus 810 ~~~~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~~~~DITer~~~ 862 (1111)
+..+..+..|++++++||+.+|+.+++.|++|.+|+++|++++++|||+||++
T Consensus 582 l~~g~~~~~E~~~~~~dG~~~~~~~~~~pv~d~~G~v~g~v~i~~DITerK~a 634 (635)
T 4eho_A 582 IDHGRGWRGEVLLRGAGNRPLPLAVRADPVTRTEDQSLGFVLIFSDATDRRTA 634 (635)
T ss_dssp HHHCCCBCCCCEECCSSSSCEECCCCEEEECSTTSSCCEEEECCCCCSSSCCC
T ss_pred HHcCCcEEEEEEEEccCCcEEEEEEEEEEEECCCCCEEEEEEEEEeCchHhhC
Confidence 44445678899999999999999999999999999999999999999998764
No 126
>2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform CRA_B; HERG, PAS domain, voltage-gated potassium channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A
Probab=98.90 E-value=2.7e-09 Score=101.51 Aligned_cols=111 Identities=14% Similarity=0.261 Sum_probs=89.8
Q ss_pred HHHhCCCCCCCCccccCC---CCccccchhhhHHHhCCCccccccccc-cccccccccccCChhhHHHHHHHHHhhhCCC
Q 037299 738 AIVHSPNPLIPPIFASDE---NTCCSEWNTAMEKLTGWSRGDIIGKML-VGEVFGSCCRLKGPDALTKFMIALHNAFGGQ 813 (1111)
Q Consensus 738 ~i~~~~~~l~~~I~v~D~---~g~ii~~N~a~~~l~G~~~eeliGk~l-~~~v~~~~~~l~~~~~~~~~~~~l~~~~~~~ 813 (1111)
..+++++. +++++|. +|+++++|+++++++|++.++++|++. ...+. +++........+...+..+
T Consensus 23 ~~~~~~~~---~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 92 (138)
T 2l0w_A 23 RKFEGQSR---KFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLH-------GPRTQRRAAAQIAQALLGA 92 (138)
T ss_dssp HHHTTTTS---EEEEEESSSTTCBEEEECSHHHHHHSCCHHHHTTSBTTCGGGC-------CTTCCHHHHHHHHHHTTCS
T ss_pred HHHhcCCC---CEEEEecCCCCCEEEEeCHHHHHHhCCCHHHHcCCCCcccccC-------CcccchhHHHHHHHHHhhc
Confidence 33444544 8999999 999999999999999999999999973 33332 2333334455566667777
Q ss_pred CcceeeeeeecCCCCEEEEEEEEeeeecCCCCEEEEEeeeecccH
Q 037299 814 DTEKFPFPLFDRNGKYVQALLTANKRVNMEGQIVGAFCFLQIASP 858 (1111)
Q Consensus 814 ~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~~~~DITe 858 (1111)
.....++.+.+++|+.+|+.++..|+.+.+|.+.+++++++|||+
T Consensus 93 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~Dit~ 137 (138)
T 2l0w_A 93 EERKVEIAFYRKDGSCFLCLVDVVPVKNEDGAVIMFILNFEVVME 137 (138)
T ss_dssp SCEEEEEEEECTTSCEEEEEEEEEEEECTTSCEEEEEEEEEEEEE
T ss_pred CCceeEEEEECCCCCEEEEEEEEEEEeCCCCCEEEEEEEEEeccC
Confidence 777888889999999999999999999999999999999999996
No 127
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6
Probab=98.86 E-value=3.8e-09 Score=95.76 Aligned_cols=103 Identities=15% Similarity=0.279 Sum_probs=83.0
Q ss_pred CccccCC---CCccccchhhhHHHhCCCcccccccc-ccccccccccccCChhhHHHHHHHHHhhhCCCCcceeeeeeec
Q 037299 749 PIFASDE---NTCCSEWNTAMEKLTGWSRGDIIGKM-LVGEVFGSCCRLKGPDALTKFMIALHNAFGGQDTEKFPFPLFD 824 (1111)
Q Consensus 749 ~I~v~D~---~g~ii~~N~a~~~l~G~~~eeliGk~-l~~~v~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~ 824 (1111)
+|+++|. +|+++++|+++++++|+++++++|++ ....+. +++........+...+..+.....++.+.+
T Consensus 3 ~i~i~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (110)
T 1byw_A 3 KFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLH-------GPCTQRRAAAQIAQALLGAEERKVEIAFYR 75 (110)
T ss_dssp EEEEEETTSSSCBEEEECHHHHHHHTCCHHHHTTSBTTCGGGC-------CTTCCHHHHHHHHHHHHTTCCEEEEEEEEC
T ss_pred CEEEEeccCCCCcEEEECHHHHHHhCCCHHHHccCCCcccccc-------CCcCCHHHHHHHHHHHhcCCCceEEEEEEc
Confidence 6888886 59999999999999999999999997 233322 123333334445555566667788888999
Q ss_pred CCCCEEEEEEEEeeeecCCCCEEEEEeeeecccH
Q 037299 825 RNGKYVQALLTANKRVNMEGQIVGAFCFLQIASP 858 (1111)
Q Consensus 825 ~dG~~~~v~~~~~pi~d~~G~v~g~v~~~~DITe 858 (1111)
++|+.+|+.++..|+.+.+|.+.+++++++|||+
T Consensus 76 ~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~DiTe 109 (110)
T 1byw_A 76 KDGSCFLCLVDVVPVKNEDGAVIMFILNFEVVME 109 (110)
T ss_dssp TTSCEEEEEEEEEEEECTTCCEEEEEEEEEEEEE
T ss_pred CCCCEEEEEEEEEEeecCCCCEEEEEEEEEeccC
Confidence 9999999999999999999999999999999996
No 128
>2ykf_A Pdtas, probable sensor histidine kinase pdtas; transferase, two-component system, GAF domain, PAS domain; 2.00A {Mycobacterium tuberculosis} PDB: 2ykh_A
Probab=98.36 E-value=2.8e-10 Score=127.37 Aligned_cols=173 Identities=12% Similarity=0.062 Sum_probs=115.8
Q ss_pred EEEEeEeeccCCCCEEEEEEEEE-echhH---HHHHHHHHhHHHHHHHHHh--------------CCCCCCCCccccCCC
Q 037299 695 VVVNACSSKDYTNNIVGVCFVGQ-DVTDQ---KLVMDKFIHIQGDYKAIVH--------------SPNPLIPPIFASDEN 756 (1111)
Q Consensus 695 v~v~~~pi~d~~G~v~gvv~v~~-DITer---K~ae~~L~~se~~l~~i~~--------------~~~~l~~~I~v~D~~ 756 (1111)
+..+..|+++ +|+++|++.+.+ |+|++ +..|...++....|..++. .++.+.+||+++|.+
T Consensus 111 v~~~~~Pi~~-~g~vigvl~~~~~di~~~~~~~~~e~~~~~~~~~L~~mi~~~~~~~~~~~~~~~~~~~~~dGIivvD~~ 189 (305)
T 2ykf_A 111 HSVEVSPVRF-GDQVVAVLTRHQPELAARRRSGHLETAYRLCATDLLRMLAEGTFPDAGDVAMSRSSPRAGDGFIRLDVD 189 (305)
Confidence 7889999998 689999999999 99998 5666666677777777664 122345599999999
Q ss_pred CccccchhhhHHHhC---CCccccccccccccccccccccCChhhHHHHHHHHHhhhCC-CCcceeeeeeecCCCCEEEE
Q 037299 757 TCCSEWNTAMEKLTG---WSRGDIIGKMLVGEVFGSCCRLKGPDALTKFMIALHNAFGG-QDTEKFPFPLFDRNGKYVQA 832 (1111)
Q Consensus 757 g~ii~~N~a~~~l~G---~~~eeliGk~l~~~v~~~~~~l~~~~~~~~~~~~l~~~~~~-~~~~~~e~~~~~~dG~~~~v 832 (1111)
|+|+++|++++++++ ++ ++++|+++.+.+.....+ +.....+...+..++.+ +.....+... . ..++
T Consensus 190 G~Ii~~N~aA~~ll~~lG~~-~~~iGk~l~el~~~~~~~---~~~~~~~~~~l~~vl~~~~~~~~~ei~~---~--~~~l 260 (305)
T 2ykf_A 190 GVVSYASPNALSAYHRMGLT-TELEGVNLIDATRPLISD---PFEAHEVDEHVQDLLAGDGKGMRMEVDA---G--GATV 260 (305)
Confidence 999999999999985 44 788999874433110000 00000112222223333 3222222211 2 3567
Q ss_pred EEEEeeeecCCCCEEEEEeeeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037299 833 LLTANKRVNMEGQIVGAFCFLQIASPELQQALTVQRQQEKKCFARLKELAYICQ 886 (1111)
Q Consensus 833 ~~~~~pi~d~~G~v~g~v~~~~DITer~~~e~el~~~~e~~~~~r~~~La~isH 886 (1111)
.++..|+.+ +|++.|++.+++|+|+.++.+.++ ..|...++.|+|
T Consensus 261 ~v~~~Pi~~-~g~~~G~Vvv~rDITE~~~lE~eL--------~~K~~~IrEIHH 305 (305)
T 2ykf_A 261 LLRTLPLVV-AGRNVGAAILIRDVTEVKRRDRAL--------ISKDATIREIHH 305 (305)
Confidence 788889886 588899999999999987776554 345556777777
No 129
>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli}
Probab=98.85 E-value=1.1e-09 Score=102.20 Aligned_cols=109 Identities=16% Similarity=0.174 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEcCCccEEeecHHHHHHcCC---ChhhhcCCcccccccchhhHHHHHHHHHHHHcC
Q 037299 595 VDELSSVAREMVRLIETATAPIFAVDVHGCVNGWNAKVAELTGL---SVEEAMGKSLVHDLVYKEYEEIVDNLLHHALKG 671 (1111)
Q Consensus 595 ~~eL~~~~~~l~~lie~~~~~I~~~D~dG~I~~~N~a~~~l~G~---~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~ 671 (1111)
.+++++.+++++.++++++++|+++|.+|+|+++|+++++++|+ +.++++|+++. +++++.. +..++.+
T Consensus 7 ~~~l~~~~~~~~~il~~~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~~~~g~~~~-~~~~~~~-------~~~~~~~ 78 (118)
T 2w0n_A 7 PYEISTLFEQRQAMLQSIKEGVVAVDDRGEVTLINDAAQELLNYRKSQDDEKLSTLSH-SWSQVVD-------VSEVLRD 78 (118)
T ss_dssp HHHHCTTHHHHHHHHHCCCCCCEEEBTTTBCCCBCHHHHHHHCSCTTTTTSSCCCTTC-CCSCTHH-------HHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhccccEEEECCCCcEeehhHHHHHHhCCCccChhhhhccCcc-cccCchh-------HHHHhcc
Confidence 34566667788999999999999999999999999999999997 88999999988 6666543 2333433
Q ss_pred CCccceEEEEEEeccccCCcEEEEEEEeEeeccCCCCEEEEEEEEEech
Q 037299 672 EEDKNVEIKLRTFGAENRKKAVFVVVNACSSKDYTNNIVGVCFVGQDVT 720 (1111)
Q Consensus 672 ~~~~~~e~~l~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DIT 720 (1111)
+..... ..+. .+| .|+.++..|+.+ +|++.|++++++|||
T Consensus 79 ~~~~~~-~~~~-----~~~--~~~~~~~~p~~~-~g~~~g~v~~~~DiT 118 (118)
T 2w0n_A 79 GTPRRD-EEIT-----IKD--RLLLINTVPVRS-NGVIIGAISTFRDKT 118 (118)
T ss_dssp TCCCCC-CCEE-----SSS--CEECCCEECCCC-SSCCCCEEECCCCCC
T ss_pred Cceecc-EEEE-----ECC--EEEEEeeceeee-CCEEEEEEEEEEeCC
Confidence 332211 1111 234 577888899998 888899999999997
No 130
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=98.82 E-value=9.7e-09 Score=118.17 Aligned_cols=115 Identities=14% Similarity=0.180 Sum_probs=90.8
Q ss_pred HHHHHHHHhcCCcEEEEcCCccEEeecHHHHHHcCCChhhhcCCcccccccchhhHHHHHHHHHHHHcCCCccceEEEEE
Q 037299 603 REMVRLIETATAPIFAVDVHGCVNGWNAKVAELTGLSVEEAMGKSLVHDLVYKEYEEIVDNLLHHALKGEEDKNVEIKLR 682 (1111)
Q Consensus 603 ~~l~~lie~~~~~I~~~D~dG~I~~~N~a~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~l~ 682 (1111)
+++..+++++++||+++|.+|+|++||++ ++++ ++.++++|+++. +++++.....+...+.. +..+.....++.+.
T Consensus 239 ~~l~~IL~~l~dgIivvD~~g~I~~~N~a-e~i~-~~~~e~iGr~v~-~~~p~~~~~~~~~l~~~-l~~g~~~~~~~~~~ 314 (369)
T 3cax_A 239 EELKAIFEALPVDVTFIDKDDRVRFFSPG-ERIF-TRTPSVLGRPVQ-LCHPPKSVYVVNKILKA-FKEGRKKEATFWLR 314 (369)
T ss_dssp HHHHHHHHHSSSEEEEECTTSBEEEECCS-SCSS-CCCGGGTTCBTT-TSSCGGGHHHHHHHHHH-HHHTSCSCEEEEEE
T ss_pred HHHHHHHHhCCCcEEEECCCCcEEEEcCH-HHcc-CChHHHcCCcHH-HHCChhhHHHHHHHHHH-HHcCCceEEEEEEe
Confidence 45788999999999999999999999999 9999 999999999998 77776655544444443 33333333333332
Q ss_pred EeccccCCcEEEEEEEeEeeccCCCCEEEEEEEEEechhHHHHHHH
Q 037299 683 TFGAENRKKAVFVVVNACSSKDYTNNIVGVCFVGQDVTDQKLVMDK 728 (1111)
Q Consensus 683 ~~~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DITerK~ae~~ 728 (1111)
.+| +++.++..|++|.+|++.|++.+++|||+.++.+.+
T Consensus 315 -----~~g--~~v~v~~~PI~d~~G~~~G~v~v~~DITe~~~le~~ 353 (369)
T 3cax_A 315 -----LRE--KYVYIKYVPLFNEKGEYIGTLEMTMDIAPYKKIEGE 353 (369)
T ss_dssp -----ETT--EEEEEEEEEEECTTSCEEEEEEEEEECHHHHTCCSC
T ss_pred -----eCC--EEEEEEEEEEECCCCCEEEEEEEEEcCHHHHHHHHH
Confidence 234 588999999999999999999999999999877655
No 131
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=98.81 E-value=2.2e-09 Score=100.54 Aligned_cols=103 Identities=17% Similarity=0.204 Sum_probs=75.6
Q ss_pred hcCCcEEEEcCC-ccEEeecHHHHHHcCCChhhhcCCcccccccchhhHHHHHHHHHHHHcC-CCcc---ceEEEEEEec
Q 037299 611 TATAPIFAVDVH-GCVNGWNAKVAELTGLSVEEAMGKSLVHDLVYKEYEEIVDNLLHHALKG-EEDK---NVEIKLRTFG 685 (1111)
Q Consensus 611 ~~~~~I~~~D~d-G~I~~~N~a~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~-~~~~---~~e~~l~~~~ 685 (1111)
+.+++|+++|.+ |+|+++|+++++++||+.+|++|+++. +++++.+.............. +... ..++.+
T Consensus 6 ~~~~~i~~~d~~~g~I~~~N~aa~~l~G~~~~el~g~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 80 (114)
T 1ll8_A 6 EFNKAIFTVDAKTTEILVANDKACGLLGYSSQDLIGQKLT-QFFLRSDSDVVEALSEEHMEADGHAAVVFGTVVDI---- 80 (114)
T ss_dssp TTTCEEEEEETTTCBEEEECTTHHHHHTCCTTTTTTSBGG-GGSSCTTTHHHHHTTSSTTSSSSCSSCCCSSSEEE----
T ss_pred CCCceEEEEECCCCeEEEehHHHHHHhCCCHHHHcCCCHH-HhcCcchhHHHHHHHHHhhccCCcceeccCcEEEE----
Confidence 456799999999 999999999999999999999999998 788776554333222212221 1111 223333
Q ss_pred cccCCcEEEEEEEeEeeccCCCCEEEEEEEEEech
Q 037299 686 AENRKKAVFVVVNACSSKDYTNNIVGVCFVGQDVT 720 (1111)
Q Consensus 686 ~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DIT 720 (1111)
.+++|..+|+.++..|+.+.++. +++++++|++
T Consensus 81 ~~~dG~~~~v~~~~~~~~~~~~~--~~v~~~~~~~ 113 (114)
T 1ll8_A 81 ISRSGEKIPVSVWMKRMRQERRL--CCVVVLEPVE 113 (114)
T ss_dssp CCTTCCCEEEECCEECCBSSSSB--EEEEEEEECC
T ss_pred EecCCCEEEEEEEEEeeccCCcc--EEEEEEeecC
Confidence 47899999999999999876543 6788888875
No 132
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=98.78 E-value=1.4e-09 Score=124.02 Aligned_cols=123 Identities=18% Similarity=0.231 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHhcCCcEEEEcCCccEEeecHHHHHHcCCChhhhcCCcccccccchhhHHHHHHHHHHHHcCCCccceE
Q 037299 599 SSVAREMVRLIETATAPIFAVDVHGCVNGWNAKVAELTGLSVEEAMGKSLVHDLVYKEYEEIVDNLLHHALKGEEDKNVE 678 (1111)
Q Consensus 599 ~~~~~~l~~lie~~~~~I~~~D~dG~I~~~N~a~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e 678 (1111)
++++++++.++++++++|+++|.+|+|++||+++++++||++++++|+++. ++.+++.. ...+...+..+... .
T Consensus 4 ~~~~~~~~~i~~~~~~~i~~~d~~g~i~~~N~a~~~l~G~~~~e~~G~~~~-~~~~~~~~---~~~~~~~~~~~~~~--~ 77 (349)
T 3a0r_A 4 EHLRNFSESILESLETAIITLSKDGRITEWNKKAEQLFGLKKENVLGRRLK-DLPDFEEI---GSVAESVFENKEPV--F 77 (349)
T ss_dssp -----CCCSSGGGSSSEEEEEESSSBCSCBCHHHHHHHSCCSTTTTTCBST-TSTTTTHH---HHHHHHHHHHCCCC--E
T ss_pred HHHHHHHHHHHhhhcCeEEEECCCCCEEeeHHHHHHHhCCCHHHHcCcCHH-HCcChhHH---HHHHHHHHhcCCce--e
Confidence 445667889999999999999999999999999999999999999999988 66443332 22333444433321 1
Q ss_pred EEEEEeccccCCcEEEEEEEeEeeccCCCCE-EEEEEEEEechhHHHHHHHHHhHH
Q 037299 679 IKLRTFGAENRKKAVFVVVNACSSKDYTNNI-VGVCFVGQDVTDQKLVMDKFIHIQ 733 (1111)
Q Consensus 679 ~~l~~~~~~~dG~~~~v~v~~~pi~d~~G~v-~gvv~v~~DITerK~ae~~L~~se 733 (1111)
.. ...++.+|+.++..|+++.+|.. .|++++++|||++|++++++.+.+
T Consensus 78 --~~----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~DiTe~~~~e~~~~~~~ 127 (349)
T 3a0r_A 78 --LN----FYKFGERYFNIRFSPFRNAKTQLLEGVIITIDDVTELYKYEEERKRRE 127 (349)
T ss_dssp --EE----CCCBTTBCCEEEEEEECCTTTTSSCEEEEEEECCSTTTTTTTTTTHHH
T ss_pred --ec----ccccCceEEEEEEEEEEcCCCceeeEEEEEEEechHHHHHHHHHHHHH
Confidence 11 12234568889999999988875 699999999999999998876543
No 133
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=98.76 E-value=1.4e-08 Score=95.60 Aligned_cols=94 Identities=10% Similarity=0.032 Sum_probs=69.9
Q ss_pred HHHhCCCCCCCCccccCCCCccccchhhhHHHhCCCccccccccccccccccccccCChhhHHHHHHHHHhhhCCCCcce
Q 037299 738 AIVHSPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGDIIGKMLVGEVFGSCCRLKGPDALTKFMIALHNAFGGQDTEK 817 (1111)
Q Consensus 738 ~i~~~~~~l~~~I~v~D~~g~ii~~N~a~~~l~G~~~eeliGk~l~~~v~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 817 (1111)
.+++++++ +|+++|.+|+++++|+++++++||+++|++|+++ ..+.||++...+...+.. ......
T Consensus 3 ~lle~~~d---~i~v~d~~G~i~yvn~~~~~~lGy~~~el~G~~~--------~~~ihp~D~~~~~~~~~~---~~~~~~ 68 (111)
T 2vlg_A 3 FPLQTKTD---IHAVLASNGRIIYISANSKLHLGYLQGEMIGSFL--------KTFLHEEDQFLVESYFYN---EHHLMP 68 (111)
T ss_dssp ------CC---EEEEECTTSBEEEECTTHHHHHSCCHHHHTTSBG--------GGGBCGGGHHHHHHHHHC---SCCSSC
T ss_pred chhhcCCC---EEEEEcCCCeEEEEChHHHHHhCCCHHHHcCCcH--------HHeECHhHHHHHHHHHhc---cCCCcc
Confidence 35666666 7999999999999999999999999999999875 345679998887765542 334456
Q ss_pred eeeeeecCCCCEEEEEEEEeeeecCCCC
Q 037299 818 FPFPLFDRNGKYVQALLTANKRVNMEGQ 845 (1111)
Q Consensus 818 ~e~~~~~~dG~~~~v~~~~~pi~d~~G~ 845 (1111)
.+++++++||+++|+..+..++.+.++.
T Consensus 69 ~e~r~~~kdG~~~wve~~~~~v~~~~~~ 96 (111)
T 2vlg_A 69 CTFRFIKKDHTIVWVEAAVEIVTTRAER 96 (111)
T ss_dssp EEEEEECTTSCEEEEEEEEEEC------
T ss_pred EEEEEEcCCCCEEEEEEEEEEEecccCC
Confidence 7899999999999999999999987654
No 134
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}
Probab=98.76 E-value=2.1e-08 Score=95.36 Aligned_cols=105 Identities=13% Similarity=0.168 Sum_probs=75.5
Q ss_pred HHHHHHHhCCCCCCCCccccCCCCccccchhhhHHHhC------------CCccccccccccccccccccccCChhhHHH
Q 037299 734 GDYKAIVHSPNPLIPPIFASDENTCCSEWNTAMEKLTG------------WSRGDIIGKMLVGEVFGSCCRLKGPDALTK 801 (1111)
Q Consensus 734 ~~l~~i~~~~~~l~~~I~v~D~~g~ii~~N~a~~~l~G------------~~~eeliGk~l~~~v~~~~~~l~~~~~~~~ 801 (1111)
.+++.+++++++ ||+++|.+|+|+++|+++++++| +++++++|+++.. +++ .+....
T Consensus 5 ~rl~~il~~~~~---gviv~D~~g~I~~~N~a~~~llg~~~~~i~~~~~g~~~~~~~G~~~~~-~~~------~~~~~~- 73 (121)
T 4hi4_A 5 ARIASALDNVSA---NVMIADNDLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDV-FHK------NPAHQR- 73 (121)
T ss_dssp HHHHHHHTTSSS---EEEEEETTCBEEEECHHHHHHHHHTHHHHHHHCTTCCGGGCTTCBGGG-GCS------SHHHHH-
T ss_pred HHHHHHHhcCCc---cEEEEcCCCeEEEecHHHHHHHHHHHHHHHHhcCCCChHHhcCCCHHH-hcC------CHHHHH-
Confidence 578899999877 89999999999999999999996 8999999998632 221 122111
Q ss_pred HHHHHHhhhCCCCcceeeeeeecCCCCEEEEEEEEeeeecCCCCEEEEEeeeecccHH
Q 037299 802 FMIALHNAFGGQDTEKFPFPLFDRNGKYVQALLTANKRVNMEGQIVGAFCFLQIASPE 859 (1111)
Q Consensus 802 ~~~~l~~~~~~~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~~~~DITer 859 (1111)
..+.. .. .....++. .+|+ ++.++.+|+++.+|++.|++++++|||++
T Consensus 74 --~~~~~-~~--~~~~~~~~---~~~~--~~~~~~~pi~~~~g~~~g~v~~~~DiTee 121 (121)
T 4hi4_A 74 --HLLAN-LT--GVHKAELN---LGGR--RFSLDVVPVFNDANARLGSAVQWTDRTEE 121 (121)
T ss_dssp --HHHHH-CS--SCEEEEEE---ETTE--EEEEEEEEEECTTSCEEEEEEEEEECC--
T ss_pred --HHHhC-cC--CCcEEEEE---ECCE--EEEEEEEEEECCCCCEEEEEEEEEEecCC
Confidence 22222 22 22333332 2444 45789999999999999999999999974
No 135
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B*
Probab=98.75 E-value=1.5e-08 Score=99.45 Aligned_cols=100 Identities=17% Similarity=0.184 Sum_probs=80.7
Q ss_pred CCccccC---CCCccccchhhhHHHhCCCccccccccccccccccccccCChhh-----------HHHHHHHHHhhhCCC
Q 037299 748 PPIFASD---ENTCCSEWNTAMEKLTGWSRGDIIGKMLVGEVFGSCCRLKGPDA-----------LTKFMIALHNAFGGQ 813 (1111)
Q Consensus 748 ~~I~v~D---~~g~ii~~N~a~~~l~G~~~eeliGk~l~~~v~~~~~~l~~~~~-----------~~~~~~~l~~~~~~~ 813 (1111)
.+|+++| .+|+++++|+++++++||++++++|++....+ +++. .......+.+.+..+
T Consensus 36 ~~i~~~d~~d~~g~i~~~N~a~~~l~G~~~~el~g~~~~~l~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (149)
T 3d72_A 36 VALILCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRNCRFLQ--------SPDGMVKPKSTRKYVDSNTINTMRKAIDRN 107 (149)
T ss_dssp SCEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGG--------STTSCCCTTCCCSSSCHHHHHHHHHHHHHT
T ss_pred ccEEEEeccCCCCcEEEECHHHHHHHCcCHHHHcCCChhHhC--------CccccccccccccccChHHHHHHHHHHHCC
Confidence 4799998 79999999999999999999999999863222 1221 233334445555556
Q ss_pred CcceeeeeeecCCCCEEEEEEEEeeeecCCCCEEEEEeeeec
Q 037299 814 DTEKFPFPLFDRNGKYVQALLTANKRVNMEGQIVGAFCFLQI 855 (1111)
Q Consensus 814 ~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~~~~D 855 (1111)
.....++.+.+++|+.+|+.++..|+.+.+|++.+++++++|
T Consensus 108 ~~~~~e~~~~~~dG~~~~~~~~~~~i~~~~g~~~~~v~~~~D 149 (149)
T 3d72_A 108 AEVQVEVVNFKKNGQRFVNFLTMIPVRDETGEYRYSMGFQCE 149 (149)
T ss_dssp CCEEEEEEEECTTCCEEEEEEEEEEEECTTSSEEEEEEECCC
T ss_pred CceEEEEEEECCCCCEEEEEEEEEEEEcCCCCEEEEEEEEeC
Confidence 677888899999999999999999999999999999999876
No 136
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=98.72 E-value=4.6e-09 Score=99.24 Aligned_cols=108 Identities=10% Similarity=-0.014 Sum_probs=73.2
Q ss_pred HHHHHHHHHhCCCCCCCCccccCCCCccccchhhhHHHhCCCccccccccccccccccccccCChhhHHHHHHHHHhhhC
Q 037299 732 IQGDYKAIVHSPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGDIIGKMLVGEVFGSCCRLKGPDALTKFMIALHNAFG 811 (1111)
Q Consensus 732 se~~l~~i~~~~~~l~~~I~v~D~~g~ii~~N~a~~~l~G~~~eeliGk~l~~~v~~~~~~l~~~~~~~~~~~~l~~~~~ 811 (1111)
++++|+.+++++++ +|+++|.+|+++++|+++++++|+++++++|+++.+. .+++....+.........
T Consensus 17 ~~~~~~~i~~~~~~---~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~--------~~~~~~~~~~~~~~~~~~ 85 (125)
T 3fc7_A 17 TRKKFESLVSDSPD---GIVHLTTNGTILSVNPSMAGRLGADPDTLVGQQLSAV--------MDSEAANQRLEAGKSAVE 85 (125)
T ss_dssp ---------CCSCC---EEEEEETTSBEEEECHHHHHHHTSCHHHHTTSBGGGS--------SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCC---eEEEEcCCCeEEEECHHHHHHhCCCHHHHcCccHHHh--------CCHHHHHHHHHHHHHHhc
Confidence 77889999999877 8999999999999999999999999999999986432 224444444333344443
Q ss_pred CCCcceeeeeeecCCCC-EEEEEEEEeeeecCCCCEEEEEeeeeccc
Q 037299 812 GQDTEKFPFPLFDRNGK-YVQALLTANKRVNMEGQIVGAFCFLQIAS 857 (1111)
Q Consensus 812 ~~~~~~~e~~~~~~dG~-~~~v~~~~~pi~d~~G~v~g~v~~~~DIT 857 (1111)
.+... ..++|. .+|+.++..|+.+. |...|++++++|||
T Consensus 86 ~~~~~------~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~DIT 125 (125)
T 3fc7_A 86 NGTAT------RSEDAVGGRHYHNQYIPVDSH-RKSDTFQLVSRDIT 125 (125)
T ss_dssp HTSCE------EEEEEETTEEEEEEEEESSTT-TTTTEEEEEEEECC
T ss_pred CCCeE------EeEcCCCcEEEEEEEEeEecC-CCeEEEEEEEecCC
Confidence 33322 234455 78889999997765 66678999999997
No 137
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}
Probab=98.70 E-value=1.9e-08 Score=100.31 Aligned_cols=119 Identities=10% Similarity=0.070 Sum_probs=85.6
Q ss_pred HHHHHHHHhCCCCCCCCccccCCCCccccchhh---hHHHhCCCccccccccccccccccccccCChhhHHHHHHHHHhh
Q 037299 733 QGDYKAIVHSPNPLIPPIFASDENTCCSEWNTA---MEKLTGWSRGDIIGKMLVGEVFGSCCRLKGPDALTKFMIALHNA 809 (1111)
Q Consensus 733 e~~l~~i~~~~~~l~~~I~v~D~~g~ii~~N~a---~~~l~G~~~eeliGk~l~~~v~~~~~~l~~~~~~~~~~~~l~~~ 809 (1111)
..++++++++++. +|+++|.+|+|++||++ +++++| ..++++|+++.+ + ..+.. ......+...
T Consensus 18 ~~~l~~IL~~~~~---gI~~vD~~g~I~~~N~a~~~~~~i~g-~~~~~iGr~v~~-~-------~~~~~-~~~v~~i~~~ 84 (151)
T 2qkp_A 18 VEQANLILNHLPL---EITFVNKDDIFQYYNDSVPAAEMVFK-RTPSQVGRNVEL-C-------HPPKV-LDKVKKVFEL 84 (151)
T ss_dssp HHHHHHHHHHSSS---EEEEEETTSBEEEECCCSCGGGCSSC-CCGGGTTSBGGG-S-------SCHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHhCCC---ceEEEcCCCeEEEEeCCCchhhhhcC-CCHHHcCCCHHH-h-------CCHHH-HHHHHHHHHH
Confidence 3568889999877 89999999999999999 999999 667899998732 1 12333 2222333444
Q ss_pred hCCCCcceeeeeeecCCCCEEEEEEEEeeeecCCCCEEEEEeeeecccHHHHHHHH
Q 037299 810 FGGQDTEKFPFPLFDRNGKYVQALLTANKRVNMEGQIVGAFCFLQIASPELQQALT 865 (1111)
Q Consensus 810 ~~~~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~~~~DITer~~~e~e 865 (1111)
+..+.....++.+...+ ...++.++..|++|.+|++.|++.+++|||+-++.+.+
T Consensus 85 l~~g~~~~~~~~~~~~~-~~~~v~v~~~Pi~d~~G~~~G~vev~~Dit~l~~le~~ 139 (151)
T 2qkp_A 85 LRNGQRDKVNMWFQSER-LGKFVYVTYAAVRDQAGDFQGVLEYVQDIKPFFELDSE 139 (151)
T ss_dssp HHTTSBSEEEEEEEETT-TTEEEEEEEEEEECTTCCEEEEEEEEEECGGGGGGGGC
T ss_pred HHcCCccEEEEEEecCC-CCeEEEEEEEEEECCCCCEEEEEEEEEECHHHHhhhhh
Confidence 44444555555553332 12567889999999999999999999999976554433
No 138
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=98.67 E-value=1.5e-08 Score=98.29 Aligned_cols=110 Identities=8% Similarity=0.006 Sum_probs=77.2
Q ss_pred HHHHHHHhCCCCCCCCccccCCCCccccchhhhHHHhCCCccccccccccccccccccccCChhhHHHHHHHHHhhhCCC
Q 037299 734 GDYKAIVHSPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGDIIGKMLVGEVFGSCCRLKGPDALTKFMIALHNAFGGQ 813 (1111)
Q Consensus 734 ~~l~~i~~~~~~l~~~I~v~D~~g~ii~~N~a~~~l~G~~~eeliGk~l~~~v~~~~~~l~~~~~~~~~~~~l~~~~~~~ 813 (1111)
..++.+++++++ +|+++|.+|+|+++|+++++++||++++++|+++...+.+ ++...+...+.......
T Consensus 7 ~~l~~i~~~~~d---~i~~~D~~g~I~~~N~aa~~l~G~~~~el~G~~~~~l~~~--------~~~~~~~~~~~~~~~~~ 75 (129)
T 3mfx_A 7 ETIELFIQHLTE---AMILVNANGFIRSCNQRSAELLDCPQVSLKGQDWRNFLTE--------HHQARYDNLLSHDVQLG 75 (129)
T ss_dssp HHHHHHHTTCSS---EEEEEETTSBEEEECHHHHHHTTSCHHHHTTSBGGGGBCT--------TCCGGGGCTTC------
T ss_pred HHHHHHHhcCCc---eEEEECCCCEEEeEhHHHHHHHCcCHHHHcCCcHHHHcCh--------HhHHHHHHHHHHHHhcC
Confidence 457888999877 8999999999999999999999999999999987544322 11111111111111111
Q ss_pred -------CcceeeeeeecCCCCEEEEEEEEeeeecCCCCEEEEEeeeeccc
Q 037299 814 -------DTEKFPFPLFDRNGKYVQALLTANKRVNMEGQIVGAFCFLQIAS 857 (1111)
Q Consensus 814 -------~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~~~~DIT 857 (1111)
.....|+.+.++||+.+|+.++.+|+.+. ... ++++++|..
T Consensus 76 ~~~~~~~~~~~~E~~~~rkdG~~~~velsis~i~~~--~~~-~v~~~~~~~ 123 (129)
T 3mfx_A 76 TNCGQPVQHPAQETTLICASGKAKDVELSISYIPGH--EPM-FVMVMHDLE 123 (129)
T ss_dssp ----CCSCEEEEEEEEECTTSCEEEEEEEEEEECSS--SCE-EEEEEEEC-
T ss_pred cccccccCCCceEEEEEcCCCCEEEEEEEEEEecCC--CcE-EEEEEechh
Confidence 12357889999999999999999999833 322 567777764
No 139
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=98.65 E-value=2.2e-08 Score=103.41 Aligned_cols=110 Identities=13% Similarity=0.122 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHhcCCcEEEEcCCccEEeecHHHHHHcCCChhhhcCCcccccccchhhHHHHHHHHHHHHcCCCccceE
Q 037299 599 SSVAREMVRLIETATAPIFAVDVHGCVNGWNAKVAELTGLSVEEAMGKSLVHDLVYKEYEEIVDNLLHHALKGEEDKNVE 678 (1111)
Q Consensus 599 ~~~~~~l~~lie~~~~~I~~~D~dG~I~~~N~a~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e 678 (1111)
++..+.++.+++++++||+++|.+|+|+++|+++++++|++.++++|+++. +++++.... ..+..+......
T Consensus 76 ~~~~~~l~~il~~~~~gvi~~D~~g~I~~~N~aa~~llg~~~~~~~g~~~~-~~~~~~~~~-------~~~~~~~~~~~~ 147 (190)
T 2jhe_A 76 EREHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAA-QLINGFNFL-------RWLESEPQDSHN 147 (190)
T ss_dssp THHHHHHHHHHHHCSSCEEEECTTCBEEEECHHHHHHHTSCHHHHTTSBGG-GTSTTCCHH-------HHHHTCCCSCEE
T ss_pred HHHHHHHHHHHHhCCCcEEEEcCCCCEEEEcHHHHHHhCCCHHHhcCccHH-HHhCCCCHH-------HHHhcCCCCCcc
Confidence 344567889999999999999999999999999999999999999999998 676654322 223323211122
Q ss_pred EEEEEeccccCCcEEEEEEEeEeeccCCCC----EEEEEEEEEechhHH
Q 037299 679 IKLRTFGAENRKKAVFVVVNACSSKDYTNN----IVGVCFVGQDVTDQK 723 (1111)
Q Consensus 679 ~~l~~~~~~~dG~~~~v~v~~~pi~d~~G~----v~gvv~v~~DITerK 723 (1111)
..+. .+|. ++.++..|+++.+|. +.|++.+++|||+++
T Consensus 148 ~~~~-----~~g~--~~~~~~~pi~~~~~~~~~~~~g~v~~~~DiTe~~ 189 (190)
T 2jhe_A 148 EHVV-----INGQ--NFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMG 189 (190)
T ss_dssp EEEE-----ETTE--EEEEEEEEETTTTEEEEEEEE-HHHHHHHHTTTC
T ss_pred eEEE-----ECCe--EEEEEEEEEEecCCCCcceEEeEEEEEeccchhc
Confidence 2222 1453 467788999886666 789999999999875
No 140
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=98.63 E-value=2.8e-07 Score=81.14 Aligned_cols=95 Identities=20% Similarity=0.403 Sum_probs=69.5
Q ss_pred cCCcEEEEcCCccEEeecHHHHHHcCCChhhhcCCcccccccchhhHHHHHHHHHHHHcCCCccceEEEEEEeccccCCc
Q 037299 612 ATAPIFAVDVHGCVNGWNAKVAELTGLSVEEAMGKSLVHDLVYKEYEEIVDNLLHHALKGEEDKNVEIKLRTFGAENRKK 691 (1111)
Q Consensus 612 ~~~~I~~~D~dG~I~~~N~a~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~l~~~~~~~dG~ 691 (1111)
++++|+++|.+|+|+++|+++++++|++.++++|+++. ++ +.... ....+...+..+... ++.. .+++
T Consensus 1 ~~~~i~~~d~~g~i~~~N~~~~~l~g~~~~~~~g~~~~-~~--~~~~~-~~~~~~~~~~~~~~~--~~~~------~~~~ 68 (96)
T 3a0s_A 1 METAIITLSKDGRITEWNKKAEQLFGLKKENVLGRRLK-DL--PDFEE-IGSVAESVFENKEPV--FLNF------YKFG 68 (96)
T ss_dssp CCCEEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGG-GS--TTCHH-HHHHHHHHHHHTCCE--EEEE------EEET
T ss_pred CCceEEEEcCCCCEeehhHHHHHHhCCCHHHhcCCCHH-HC--cchHH-HHHHHHHHhccCCeE--EEEE------EcCC
Confidence 47899999999999999999999999999999999987 55 33332 223334444333221 2222 1345
Q ss_pred EEEEEEEeEeeccCCCC-EEEEEEEEEe
Q 037299 692 AVFVVVNACSSKDYTNN-IVGVCFVGQD 718 (1111)
Q Consensus 692 ~~~v~v~~~pi~d~~G~-v~gvv~v~~D 718 (1111)
.+|+.++..|+.+.+|. +.|++++++|
T Consensus 69 ~~~~~~~~~p~~~~~~~~~~g~v~~~~D 96 (96)
T 3a0s_A 69 ERYFNIRFSPFRNAKTQLLEGVIITIDD 96 (96)
T ss_dssp TEEEEEEEEEEECTTTCCEEEEEEEEEC
T ss_pred cEEEEEEEEEeEcCCCCeeeEEEEEecC
Confidence 57999999999988665 6799999887
No 141
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=98.62 E-value=1.1e-07 Score=106.38 Aligned_cols=123 Identities=9% Similarity=0.061 Sum_probs=103.0
Q ss_pred CcEEEEcCCccEEeecHHHHHHcCCChhhhcCCcccccccchhhHHHHHHHHHHHHcCCCc---cceEEEEEEeccccCC
Q 037299 614 APIFAVDVHGCVNGWNAKVAELTGLSVEEAMGKSLVHDLVYKEYEEIVDNLLHHALKGEED---KNVEIKLRTFGAENRK 690 (1111)
Q Consensus 614 ~~I~~~D~dG~I~~~N~a~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~---~~~e~~l~~~~~~~dG 690 (1111)
..+...|.+|+++|+|+++..++||.++|++|+++. +++||+|.+.+...+.++++++.. ...+++++ ++||
T Consensus 175 ~Fitrh~~dG~~~yvs~~~~~lLGY~peELig~s~~-~~vHPdD~~~~~~~~~~~l~~~~~~~f~s~~yR~~----~kdG 249 (317)
T 4dj3_A 175 IFTTTHTPGCVFLEVDERAVPLLGYLPQDLIGTSIL-TYLHPEDRPLMVAIHQKVLKYAGHPPFEHSPVRFC----TQNG 249 (317)
T ss_dssp EEEEEECTTSBEEEECTTHHHHHSCCHHHHTTSBGG-GGBCTTTTTHHHHHHHHHHHTTTSCCEECCCEEEE----CTTS
T ss_pred ceEEEecCCCeEEEEChHHhhhcCcChHHHcCCCHH-HeECHHHHHHHHHHHHHHHHcCCCccccceEEEEE----ccCC
Confidence 457777899999999999999999999999999999 999999999999999999886554 35667776 7899
Q ss_pred cEEEEEEEeEeeccC-CCCEEEEEEEEE--------e-----chhHHHHHHHHHhHHHHHHHHHh
Q 037299 691 KAVFVVVNACSSKDY-TNNIVGVCFVGQ--------D-----VTDQKLVMDKFIHIQGDYKAIVH 741 (1111)
Q Consensus 691 ~~~~v~v~~~pi~d~-~G~v~gvv~v~~--------D-----ITerK~ae~~L~~se~~l~~i~~ 741 (1111)
+++|+..++.+++|. .+++..++++.+ | +++++..+.++++.+++++.++-
T Consensus 250 ~~vwvet~~~~~~np~s~~~e~II~~h~v~~~p~~~dvf~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (317)
T 4dj3_A 250 EYVILDSSWSSFVNPWSRKVSFIIGRHKVRTSPLNEDVFATRIKKAASNDKDIAELQEQIHKLLL 314 (317)
T ss_dssp CEEEEEEEEEEEECSSSCCEEEEEEEEEECCCCSSSCTTCCCCCCCSSCCHHHHHHHHHHHHHTT
T ss_pred CEEEEEEEEEEEECCCCCcccEEEEEEEeccCCCCCCcccCCccchhccchhHHHHHHHHHHHhc
Confidence 999999999999986 566777777777 4 45566777788888888877654
No 142
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=98.54 E-value=1.2e-08 Score=96.54 Aligned_cols=112 Identities=12% Similarity=0.096 Sum_probs=75.6
Q ss_pred HHhHHHHHHHHHhCCCCCCCCccccCCCCccccchhhhHHHhCCCccccccccccccccccccccCChhhHHHHHHHHHh
Q 037299 729 FIHIQGDYKAIVHSPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGDIIGKMLVGEVFGSCCRLKGPDALTKFMIALHN 808 (1111)
Q Consensus 729 L~~se~~l~~i~~~~~~l~~~I~v~D~~g~ii~~N~a~~~l~G~~~eeliGk~l~~~v~~~~~~l~~~~~~~~~~~~l~~ 808 (1111)
+......++.+++++++ +|+++|.+|+|+++|+++++++|+++++++|+++.+.+ + +.....+...+.+
T Consensus 7 ~~~~~~~~~~il~~~~~---~i~~~D~~g~i~~~N~a~~~l~g~~~~e~~G~~~~~~~-~-------~~~~~~~~~~~~~ 75 (118)
T 3fg8_A 7 HHHHSSGRENLYFQGGL---GFMALDEDLRIIYVNSGCLRHVRRSRDELLGRVVTEVL-P-------ETQGSYFDALCRK 75 (118)
T ss_dssp ------CCCCSSSCTTC---EEEEECTTCBEEEECHHHHHHHTCCHHHHTTSBHHHHC-G-------GGTTSHHHHHHHH
T ss_pred cccccchHHHHHhhCCc---eEEEECCCCeEEEECHHHHHHhCCCHHHHcCCcHHHHc-C-------ccchHHHHHHHHH
Confidence 34455566777888776 89999999999999999999999999999999864322 2 2222334455556
Q ss_pred hhCCCCcceeeeeeecCCCCEEEEEEEEeeeecCCCCEEEEEeeeecccHH
Q 037299 809 AFGGQDTEKFPFPLFDRNGKYVQALLTANKRVNMEGQIVGAFCFLQIASPE 859 (1111)
Q Consensus 809 ~~~~~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~~~~DITer 859 (1111)
++..+.....++.....+| .|+.++..|+.+ |++++++|||+|
T Consensus 76 ~~~~~~~~~~~~~~~~~~g--~~~~~~~~p~~~------g~v~~~~DITer 118 (118)
T 3fg8_A 76 VLATGREQQTRVDSLYSPG--MTIEVTAAADSG------ALVVHFRDVTAE 118 (118)
T ss_dssp HHHHCCCEEEEEECSSSTT--CEEEEEEEEETT------EEEEEEEECSCC
T ss_pred HHHcCCceEEEEEEEcCCC--eEEEEEEEEcCC------cEEEEEEeccCC
Confidence 6665655555333333366 466777777653 378899999963
No 143
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=98.53 E-value=3.5e-07 Score=103.29 Aligned_cols=106 Identities=9% Similarity=0.045 Sum_probs=91.3
Q ss_pred cCCcEEEEcCCccEEeecHHHHHHcCCChhhhcCCcccccccchhhHHHHHHHHHHHHcCCCc-----cceEEEEEEecc
Q 037299 612 ATAPIFAVDVHGCVNGWNAKVAELTGLSVEEAMGKSLVHDLVYKEYEEIVDNLLHHALKGEED-----KNVEIKLRTFGA 686 (1111)
Q Consensus 612 ~~~~I~~~D~dG~I~~~N~a~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~-----~~~e~~l~~~~~ 686 (1111)
..+.++..|.+|+++|+|+++..++||+++|++|+++. +++||+|.+.+...+..++..+.. ...+++++
T Consensus 153 ~~~fi~r~~~dG~~~yvn~~~~~lLGY~peELiG~s~~-~~vHPdD~~~~~~~~~~~l~~G~~~~~~~~s~~yR~~---- 227 (339)
T 3rty_A 153 SPKFAIRHTATGIISHVDSAAVSALGYLPQDLIGRSIM-DFYHHEDLSVMKETYETVMKKGQTAGASFCSKPYRFL---- 227 (339)
T ss_dssp CCEEEEEEETTCBEEEECTTHHHHHCCCHHHHTTSBGG-GGBCGGGHHHHHHHHHHHHHHTTSTTCCCBCCCEEEE----
T ss_pred CceEEEEECCCCeEEEcChhhhcccCCCHHHHcCCcHH-HEECHHHHHHHHHHHHHHHHcCCcccccccceEEEEE----
Confidence 45678889999999999999999999999999999998 999999999999888888875543 24567776
Q ss_pred ccCCcEEEEEEEeEeeccCC-CCEEEEEEEEEechhH
Q 037299 687 ENRKKAVFVVVNACSSKDYT-NNIVGVCFVGQDVTDQ 722 (1111)
Q Consensus 687 ~~dG~~~~v~v~~~pi~d~~-G~v~gvv~v~~DITer 722 (1111)
+++|+++|+..++.+++|.. +.+..++++.+.|++.
T Consensus 228 ~kdG~~vWlet~~~~~~np~s~~~~~II~~h~vi~~p 264 (339)
T 3rty_A 228 IQNGCYVLLETEWTSFVNPWSRKLEFVVGHHRVFQGP 264 (339)
T ss_dssp CTTSCEEEEEEEEEEEECTTTCSEEEEEEEEEEEECC
T ss_pred ccCCCEEEEEEEEEEEECCCCCCeeEEEEEEEECCCC
Confidence 78999999999999999865 5677888888888764
No 144
>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...
Probab=98.49 E-value=4.4e-07 Score=86.28 Aligned_cols=103 Identities=14% Similarity=0.130 Sum_probs=72.4
Q ss_pred HHHHHhcCCcEEEEcCCccEEeecHHHHHHcCCChhhhcCCcccccccchhhHHHHHHHHHHHHcCCCccceEEEEEEec
Q 037299 606 VRLIETATAPIFAVDVHGCVNGWNAKVAELTGLSVEEAMGKSLVHDLVYKEYEEIVDNLLHHALKGEEDKNVEIKLRTFG 685 (1111)
Q Consensus 606 ~~lie~~~~~I~~~D~dG~I~~~N~a~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~l~~~~ 685 (1111)
..+++++++|++++|.+|+|++||.++++++||++++++|+++...+.+......+...+.+.+..+. ....+...
T Consensus 20 ~~~ld~l~~Gii~lD~~g~I~~~N~~~e~~sG~~~~eviGk~~f~~~~~~~~~~~f~~rf~~~~~~g~-l~~~~~~v--- 95 (125)
T 1nwz_A 20 DGQLDGLAFGAIQLDGDGNILQYNAAEGDITGRDPKQVIGKNFFKDVAPCTDSPEFYGKFKEGVASGN-LNTMFEYT--- 95 (125)
T ss_dssp HHHHTTCSSEEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHHTC-CEEEEEEE---
T ss_pred HHHHhccCceEEEECCCCEEEEEHHHHHHHhCCCHHHHcCCchhhhccchhcccHHHHHHHHHHhcCc-eeEEEEEE---
Confidence 45799999999999999999999999999999999999999998334444444444555555554443 22222222
Q ss_pred cccCCcEEEEEEEeEeeccCCCCEEEEEE
Q 037299 686 AENRKKAVFVVVNACSSKDYTNNIVGVCF 714 (1111)
Q Consensus 686 ~~~dG~~~~v~v~~~pi~d~~G~v~gvv~ 714 (1111)
.+++|.++.+.+ .+.++.+|...+++.
T Consensus 96 ~~~~~~p~~v~i--~l~~~~~~~~~~i~v 122 (125)
T 1nwz_A 96 FDYQMTPTKVKV--HMKKALSGDSYWVFV 122 (125)
T ss_dssp ECTTSCCEEEEE--EEEECSSSSEEEEEE
T ss_pred EcCCCCEEEEEE--EEEEcCCCCEEEEEE
Confidence 256777555544 456667887776654
No 145
>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli}
Probab=98.49 E-value=1.4e-07 Score=87.57 Aligned_cols=108 Identities=11% Similarity=0.090 Sum_probs=79.0
Q ss_pred HHHHHhHHHHHHHHHhCCCCCCCCccccCCCCccccchhhhHHHhCC---CccccccccccccccccccccCChhhHHHH
Q 037299 726 MDKFIHIQGDYKAIVHSPNPLIPPIFASDENTCCSEWNTAMEKLTGW---SRGDIIGKMLVGEVFGSCCRLKGPDALTKF 802 (1111)
Q Consensus 726 e~~L~~se~~l~~i~~~~~~l~~~I~v~D~~g~ii~~N~a~~~l~G~---~~eeliGk~l~~~v~~~~~~l~~~~~~~~~ 802 (1111)
.+++++.++.++.+++++++ +|+++|.+|+++++|+++++++|+ +.++++|+++...+ ++.. +
T Consensus 7 ~~~l~~~~~~~~~il~~~~~---~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~~~~g~~~~~~~--------~~~~---~ 72 (118)
T 2w0n_A 7 PYEISTLFEQRQAMLQSIKE---GVVAVDDRGEVTLINDAAQELLNYRKSQDDEKLSTLSHSWS--------QVVD---V 72 (118)
T ss_dssp HHHHCTTHHHHHHHHHCCCC---CCEEEBTTTBCCCBCHHHHHHHCSCTTTTTSSCCCTTCCCS--------CTHH---H
T ss_pred HHHHHHHHHHHHHHHhhccc---cEEEECCCCcEeehhHHHHHHhCCCccChhhhhccCccccc--------Cchh---H
Confidence 45677778889999999987 899999999999999999999997 78999998764322 1222 1
Q ss_pred HHHHHhhhCCCCcc-eeeeeeecCCCCEEEEEEEEeeeecCCCCEEEEEeeeeccc
Q 037299 803 MIALHNAFGGQDTE-KFPFPLFDRNGKYVQALLTANKRVNMEGQIVGAFCFLQIAS 857 (1111)
Q Consensus 803 ~~~l~~~~~~~~~~-~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~~~~DIT 857 (1111)
. ..+..+... ..+ ...+| .|+.++..|+.+ +|.+.|++++++|||
T Consensus 73 ~----~~~~~~~~~~~~~---~~~~~--~~~~~~~~p~~~-~g~~~g~v~~~~DiT 118 (118)
T 2w0n_A 73 S----EVLRDGTPRRDEE---ITIKD--RLLLINTVPVRS-NGVIIGAISTFRDKT 118 (118)
T ss_dssp H----HHHHTTCCCCCCC---EESSS--CEECCCEECCCC-SSCCCCEEECCCCCC
T ss_pred H----HHhccCceeccEE---EEECC--EEEEEeeceeee-CCEEEEEEEEEEeCC
Confidence 1 222222221 112 12355 467788889887 888899999999997
No 146
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=98.48 E-value=1e-07 Score=88.98 Aligned_cols=99 Identities=17% Similarity=0.151 Sum_probs=70.7
Q ss_pred CCccccCCC-CccccchhhhHHHhCCCccccccccccccccccccccCChhhHHHHHHHHHh-hhCCC-Cc---ceeeee
Q 037299 748 PPIFASDEN-TCCSEWNTAMEKLTGWSRGDIIGKMLVGEVFGSCCRLKGPDALTKFMIALHN-AFGGQ-DT---EKFPFP 821 (1111)
Q Consensus 748 ~~I~v~D~~-g~ii~~N~a~~~l~G~~~eeliGk~l~~~v~~~~~~l~~~~~~~~~~~~l~~-~~~~~-~~---~~~e~~ 821 (1111)
.+|+++|.+ |+|+++|+++++++||++++++|+++...+. ++..... ..+.. ..... .. ...++.
T Consensus 9 ~~i~~~d~~~g~I~~~N~aa~~l~G~~~~el~g~~~~~l~~--------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 79 (114)
T 1ll8_A 9 KAIFTVDAKTTEILVANDKACGLLGYSSQDLIGQKLTQFFL--------RSDSDVV-EALSEEHMEADGHAAVVFGTVVD 79 (114)
T ss_dssp CEEEEEETTTCBEEEECTTHHHHHTCCTTTTTTSBGGGGSS--------CTTTHHH-HHTTSSTTSSSSCSSCCCSSSEE
T ss_pred ceEEEEECCCCeEEEehHHHHHHhCCCHHHHcCCCHHHhcC--------cchhHHH-HHHHHHhhccCCcceeccCcEEE
Confidence 389999999 9999999999999999999999998743322 2222211 12222 12211 11 145677
Q ss_pred eecCCCCEEEEEEEEeeeecCCCCEEEEEeeeeccc
Q 037299 822 LFDRNGKYVQALLTANKRVNMEGQIVGAFCFLQIAS 857 (1111)
Q Consensus 822 ~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~~~~DIT 857 (1111)
+.+++|+.+|+.++.+|+.+.++. +++++++|++
T Consensus 80 ~~~~dG~~~~v~~~~~~~~~~~~~--~~v~~~~~~~ 113 (114)
T 1ll8_A 80 IISRSGEKIPVSVWMKRMRQERRL--CCVVVLEPVE 113 (114)
T ss_dssp ECCTTCCCEEEECCEECCBSSSSB--EEEEEEEECC
T ss_pred EEecCCCEEEEEEEEEeeccCCcc--EEEEEEeecC
Confidence 889999999999999999876553 5678888875
No 147
>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1
Probab=98.47 E-value=6e-07 Score=85.47 Aligned_cols=102 Identities=10% Similarity=0.106 Sum_probs=72.4
Q ss_pred HHHHhcCCcEEEEcCCccEEeecHHHHHHcCCChhhhcCCcccccccchhhHHHHHHHHHHHHcCCCccceEEEEEEecc
Q 037299 607 RLIETATAPIFAVDVHGCVNGWNAKVAELTGLSVEEAMGKSLVHDLVYKEYEEIVDNLLHHALKGEEDKNVEIKLRTFGA 686 (1111)
Q Consensus 607 ~lie~~~~~I~~~D~dG~I~~~N~a~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~l~~~~~ 686 (1111)
.+++++++||+++|.+|+|++||.++++++||++++++|+++...+.+......+...+.+.+..+. ....+... .
T Consensus 26 ~~ld~l~~GiivlD~dg~I~~~N~~~e~isG~s~eeviGk~~f~~~~p~~~~~~f~grf~~~~~~G~-l~~~~~yv---~ 101 (129)
T 1mzu_A 26 AEFDALPVGAIQVDGSGVIHRYNRTESRLSGRIPERVIGRNFFTEVAPCTNIPAFSGRFMDGVTSGT-LDARFDFV---F 101 (129)
T ss_dssp TTGGGCSSEEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHTSC-CEEEEEEE---E
T ss_pred HHHhccCceEEEECCCCeEEEEHHHHHHHhCCCHHHHcCCchhhhccchhcccHHHHHHHHHHhcCc-eeEEEEEE---E
Confidence 4699999999999999999999999999999999999999998334444444555555666555444 22222222 2
Q ss_pred ccCCcEEEEEEEeEeeccCCCCEEEEEE
Q 037299 687 ENRKKAVFVVVNACSSKDYTNNIVGVCF 714 (1111)
Q Consensus 687 ~~dG~~~~v~v~~~pi~d~~G~v~gvv~ 714 (1111)
+++|.++.+ +.....+.+|...+++.
T Consensus 102 ~~~~~p~~v--~i~l~~~~~~~~~~i~v 127 (129)
T 1mzu_A 102 DFQMAPVRV--QIRMQNAGVPDRYWIFV 127 (129)
T ss_dssp ECSSCEEEE--EEEEEECSSTTEEEEEE
T ss_pred cCCCCEEEE--EEEEEEcCCCCEEEEEE
Confidence 467775554 45556677887776653
No 148
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.46 E-value=1e-07 Score=88.96 Aligned_cols=105 Identities=16% Similarity=0.107 Sum_probs=77.2
Q ss_pred HHHHhCCCCCCCCccccCCCCccccchhhhHHHhCCCccccccccccccccccccccCChhhHHHHHHHHHhhhC-CCCc
Q 037299 737 KAIVHSPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGDIIGKMLVGEVFGSCCRLKGPDALTKFMIALHNAFG-GQDT 815 (1111)
Q Consensus 737 ~~i~~~~~~l~~~I~v~D~~g~ii~~N~a~~~l~G~~~eeliGk~l~~~v~~~~~~l~~~~~~~~~~~~l~~~~~-~~~~ 815 (1111)
..+++++++ ||+++|.+|+|+++|+++++++|+++++++|+++.+. ++.... .. ..+.+++. +...
T Consensus 10 ~~il~~~~~---~i~~~D~~g~I~~~N~aa~~l~g~~~~~~~g~~~~~~-~~~~~~-----~~----~~~~~~~~~~~~~ 76 (115)
T 3b33_A 10 SAILNNMVT---ATLILDDGLAIRYANPAAELLFSQSAKRIVEQSLSQL-IQHASL-----DL----ALLTQPLQSGQSI 76 (115)
T ss_dssp HHHHHHCSS---EEEEECTTCBEEEECHHHHHHTTSCHHHHTTCBHHHH-CSEEEC-----CT----HHHHHHHHHCCCE
T ss_pred HHHHhhcCc---eEEEECCCCcEEEECHHHHHHhCCCHHHHhCCCHHHH-hCccch-----hh----HHHHHHHHcCCcc
Confidence 457888876 8999999999999999999999999999999987433 221100 11 11222332 3333
Q ss_pred ceeeeeeecCCCCEEEEEEEEeeeecCCCCEEEEEeeeeccc
Q 037299 816 EKFPFPLFDRNGKYVQALLTANKRVNMEGQIVGAFCFLQIAS 857 (1111)
Q Consensus 816 ~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~~~~DIT 857 (1111)
...+..+. ++|+.+|+.++..|+.+ +|. .+++.+++||+
T Consensus 77 ~~~~~~~~-~~g~~~~~~~~~~pi~~-~g~-~~~l~~~~Di~ 115 (115)
T 3b33_A 77 TDSDVTFV-VDGRPLMLEVTVSPITW-QRQ-LMLLVEMRKID 115 (115)
T ss_dssp EEEEEEEE-ETTEEEEEEEEEEEEEE-TTE-EEEEEEEEEC-
T ss_pred cCCceEEe-cCCCEEEEEEEEEEeec-CCc-eEEEEEEEeCC
Confidence 44566666 78999999999999999 887 68999999985
No 149
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=98.43 E-value=3.9e-07 Score=105.90 Aligned_cols=90 Identities=12% Similarity=0.106 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCC--CCceEEEEEEEc-cccCCCCceeEEEEEEEeeCCCCCChhhhhhccCCCCCCCCccc
Q 037299 990 QARIQQVLADFLLNMVRYSPS--AEGWVEIHVRPT-LKQSSEGQTIVHNEFRMVCPGEGLPPELVQDMFHSSRWMTQEGL 1066 (1111)
Q Consensus 990 ~~~L~qVl~nLl~NAik~t~~--~~g~I~I~v~~~-~~~~~~~~~~~~v~i~V~DnG~GIp~e~~~~iFepf~~~~G~GL 1066 (1111)
...+..++.||++||++|+.+ .+|.|.|++... .+ .+.|+|+|+|+|+|+. ....+.|+
T Consensus 295 ~~~~~l~v~El~~Nav~Ha~~~~~~g~i~v~~~~~~~~---------~l~i~V~D~G~g~~~~---------~~~~~~G~ 356 (399)
T 3ke6_A 295 IADIVHAISEFVENAVEHGYATDVSKGIVVAAALAGDG---------NVRASVIDRGQWKDHR---------DGARGRGR 356 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHBCCSCCTTCEEEEEEECTTS---------EEEEEEEESCBC---------------------
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEcCCC---------EEEEEEEECCCCCCCC---------CCCCCCCc
Confidence 568999999999999999732 258899988775 23 7899999999999986 12356799
Q ss_pred hHHHHHHHHHHcCCEEEEEecCCceEEEEEEEeeC
Q 037299 1067 GLSMCRKILKLMNGEVQYIRESERCYFLIIFELPM 1101 (1111)
Q Consensus 1067 GL~i~r~iVe~~gG~I~v~s~~ggstF~~~L~LP~ 1101 (1111)
||+|++.+++. +.+.+.++|+++++++++|.
T Consensus 357 GL~lv~~l~~~----~~~~~~~~G~~v~~~~~~~~ 387 (399)
T 3ke6_A 357 GLAMAEALVSE----ARIMHGAGGTTATLTHRLSR 387 (399)
T ss_dssp CHHHHHTTSSE----EEEEEETTEEEEEEEEECEE
T ss_pred HHHHHHHHHHh----eeeEECCCcEEEEEEEEcCC
Confidence 99999887764 55777777887777777654
No 150
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=98.31 E-value=2.8e-06 Score=95.02 Aligned_cols=104 Identities=10% Similarity=-0.006 Sum_probs=88.9
Q ss_pred CCcEEEEcCCccEEeecHHHHHHcCCChhhhcCCcccccccchhhHHHHHHHHHHHHcCC-Ccc-ceEEEEEEeccccCC
Q 037299 613 TAPIFAVDVHGCVNGWNAKVAELTGLSVEEAMGKSLVHDLVYKEYEEIVDNLLHHALKGE-EDK-NVEIKLRTFGAENRK 690 (1111)
Q Consensus 613 ~~~I~~~D~dG~I~~~N~a~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~-~~~-~~e~~l~~~~~~~dG 690 (1111)
...+...|.+|+++|+|+++..++||.++|++|+++. +++||+|.+.+...+..+++++ ... ..+++++ +++|
T Consensus 176 ~~Fitrh~~dG~~~yvd~~~~~lLGY~peELig~s~~-~~vHPdD~~~~~~~~~~~l~~~g~~~~~~~yR~~----~kdG 250 (320)
T 4dj2_A 176 RIFTTRHTPSCLFQDVDERAAPLLGYLPQDLLGAPVL-LFLHPEDRPLMLAIHKKILQLAGQPFDHSPIRFC----ARNG 250 (320)
T ss_dssp CEEEEEECTTCBEEEECTTHHHHHSCCHHHHTTSBGG-GGBCGGGHHHHHHHHHHHTTSSSCCEECCCEEEE----CSSS
T ss_pred ceEEEEecCCceEEEcCcceeccCCcChHHHcCCcHH-HhCCHHHHHHHHHHHHHHHhcCCCcccceEEEEE----ccCC
Confidence 4567778999999999999999999999999999999 9999999999999999998843 333 3466766 7899
Q ss_pred cEEEEEEEeEeeccC-CCCEEEEEEEEEechh
Q 037299 691 KAVFVVVNACSSKDY-TNNIVGVCFVGQDVTD 721 (1111)
Q Consensus 691 ~~~~v~v~~~pi~d~-~G~v~gvv~v~~DITe 721 (1111)
+++|+..++.+++|. .+++..+++..+-|++
T Consensus 251 ~~vwvet~~~~~~np~s~~~e~II~~h~v~~g 282 (320)
T 4dj2_A 251 EYVTMDTSWAGFVHPWSRKVAFVLGRHKVRTA 282 (320)
T ss_dssp CEEEEECEEEEEECTTTCSEEEEEEEEEESSC
T ss_pred CEEEEEEEEEEEECCCCCCccEEEEEEEEccC
Confidence 999999999999885 6778888888776655
No 151
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=98.27 E-value=1e-06 Score=101.29 Aligned_cols=115 Identities=13% Similarity=0.114 Sum_probs=83.5
Q ss_pred HHHHHHHHHhCCCCCCCCccccCCCCccccchhhhHHHhCCCccccccccccccccccccccCChhhHHHHHHHHHhhhC
Q 037299 732 IQGDYKAIVHSPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGDIIGKMLVGEVFGSCCRLKGPDALTKFMIALHNAFG 811 (1111)
Q Consensus 732 se~~l~~i~~~~~~l~~~I~v~D~~g~ii~~N~a~~~l~G~~~eeliGk~l~~~v~~~~~~l~~~~~~~~~~~~l~~~~~ 811 (1111)
...+++++++++++ ||+++|.+|+|++||++ ++++ ++.++++|+++.. ++ ++...... ..+...+.
T Consensus 237 ~~~~l~~IL~~l~d---gIivvD~~g~I~~~N~a-e~i~-~~~~e~iGr~v~~-~~-------p~~~~~~~-~~l~~~l~ 302 (369)
T 3cax_A 237 NIEELKAIFEALPV---DVTFIDKDDRVRFFSPG-ERIF-TRTPSVLGRPVQL-CH-------PPKSVYVV-NKILKAFK 302 (369)
T ss_dssp CHHHHHHHHHHSSS---EEEEECTTSBEEEECCS-SCSS-CCCGGGTTCBTTT-SS-------CGGGHHHH-HHHHHHHH
T ss_pred hHHHHHHHHHhCCC---cEEEECCCCcEEEEcCH-HHcc-CChHHHcCCcHHH-HC-------ChhhHHHH-HHHHHHHH
Confidence 34568889999877 99999999999999999 9999 9999999998743 22 12222222 22333333
Q ss_pred CCCcceeeeeeecCCCCEEEEEEEEeeeecCCCCEEEEEeeeecccHHHHHH
Q 037299 812 GQDTEKFPFPLFDRNGKYVQALLTANKRVNMEGQIVGAFCFLQIASPELQQA 863 (1111)
Q Consensus 812 ~~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~~~~DITer~~~e 863 (1111)
.+.....++.+. .+| +++.++..|++|.+|++.|++.+++|||+.++.+
T Consensus 303 ~g~~~~~~~~~~-~~g--~~v~v~~~PI~d~~G~~~G~v~v~~DITe~~~le 351 (369)
T 3cax_A 303 EGRKKEATFWLR-LRE--KYVYIKYVPLFNEKGEYIGTLEMTMDIAPYKKIE 351 (369)
T ss_dssp HTSCSCEEEEEE-ETT--EEEEEEEEEEECTTSCEEEEEEEEEECHHHHTCC
T ss_pred cCCceEEEEEEe-eCC--EEEEEEEEEEECCCCCEEEEEEEEEcCHHHHHHH
Confidence 333333344333 355 5788999999999999999999999999866544
No 152
>2ykf_A Pdtas, probable sensor histidine kinase pdtas; transferase, two-component system, GAF domain, PAS domain; 2.00A {Mycobacterium tuberculosis} PDB: 2ykh_A
Probab=97.59 E-value=1.1e-07 Score=106.21 Aligned_cols=120 Identities=20% Similarity=0.181 Sum_probs=85.3
Q ss_pred HHHHhcCCcEEEEcCCccEEeecHHHHHHcC---CChhhhcCCcccccccchh---hH--HHHHHHHHHHHcC-CCccce
Q 037299 607 RLIETATAPIFAVDVHGCVNGWNAKVAELTG---LSVEEAMGKSLVHDLVYKE---YE--EIVDNLLHHALKG-EEDKNV 677 (1111)
Q Consensus 607 ~lie~~~~~I~~~D~dG~I~~~N~a~~~l~G---~~~eeliG~~~~~~l~~~~---~~--~~~~~~l~~~l~~-~~~~~~ 677 (1111)
.+++++++||+++|.+|+|+++|++++++++ ++ ++++|+++. ++++.. .. ..+...+..++.+ +.....
T Consensus 174 ~~~~~~~dGIivvD~~G~Ii~~N~aA~~ll~~lG~~-~~~iGk~l~-el~~~~~~~~~~~~~~~~~l~~vl~~~~~~~~~ 251 (305)
T 2ykf_A 174 RSSPRAGDGFIRLDVDGVVSYASPNALSAYHRMGLT-TELEGVNLI-DATRPLISDPFEAHEVDEHVQDLLAGDGKGMRM 251 (305)
Confidence 4577999999999999999999999999985 44 789999988 666543 11 1222323334443 322211
Q ss_pred EEEEEEeccccCCcEEEEEEEeEeeccCCCCEEEEEEEEEechhHHHHHHHHHhHHHHHHH
Q 037299 678 EIKLRTFGAENRKKAVFVVVNACSSKDYTNNIVGVCFVGQDVTDQKLVMDKFIHIQGDYKA 738 (1111)
Q Consensus 678 e~~l~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DITerK~ae~~L~~se~~l~~ 738 (1111)
+ +. ....++.++..|+++ +|++.|++.+++|||+.++.+++|+......+.
T Consensus 252 e--i~-------~~~~~l~v~~~Pi~~-~g~~~G~Vvv~rDITE~~~lE~eL~~K~~~IrE 302 (305)
T 2ykf_A 252 E--VD-------AGGATVLLRTLPLVV-AGRNVGAAILIRDVTEVKRRDRALISKDATIRE 302 (305)
Confidence 1 11 123677888999987 588899999999999999999999776554443
No 153
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=98.26 E-value=4e-06 Score=93.37 Aligned_cols=103 Identities=7% Similarity=-0.008 Sum_probs=87.6
Q ss_pred CcEEEEcCCccEEeecHHHHHHcCCChhhhcCCcccccccchhhHHHHHHHHHHHHcCCCc-cc-eEEEEEEeccccCCc
Q 037299 614 APIFAVDVHGCVNGWNAKVAELTGLSVEEAMGKSLVHDLVYKEYEEIVDNLLHHALKGEED-KN-VEIKLRTFGAENRKK 691 (1111)
Q Consensus 614 ~~I~~~D~dG~I~~~N~a~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~-~~-~e~~l~~~~~~~dG~ 691 (1111)
..+...+.+|+++|+|+++..++||.++|++|+++. +++||+|.+.+...+.++++++.. .. .+++++ +++|+
T Consensus 166 ~Fitrh~~dG~~~yvd~~~~~lLGY~peELig~s~~-~~iHpdD~~~~~~~~~~~l~~~g~~~~~~~yR~~----~kdG~ 240 (309)
T 3gdi_A 166 IFTTTHTPNCLFQAVDERAVPLLGYLPQDLIETPVL-VQLHPSDRPLMLAIHKKILQAGGQPFDYSPIRFR----TRNGE 240 (309)
T ss_dssp EEEEEECTTCBEEEECTTHHHHHSCCHHHHTTSBHH-HHBCTTSHHHHHHHHHHHHHTTTCCEEEEEEEEE----CTTSC
T ss_pred eEEEEecCCCeEEEECcccccccCcCHHHHcCCCHH-HhCCHHHHHHHHHHHHHHHhcCCceeeceEEEEE----ccCCC
Confidence 357778999999999999999999999999999998 999999999999999998885443 32 355555 78999
Q ss_pred EEEEEEEeEeeccC-CCCEEEEEEEEEechh
Q 037299 692 AVFVVVNACSSKDY-TNNIVGVCFVGQDVTD 721 (1111)
Q Consensus 692 ~~~v~v~~~pi~d~-~G~v~gvv~v~~DITe 721 (1111)
++|+.....+++|. .+++..++++.+-++.
T Consensus 241 ~vwvet~~~~~~np~s~~~e~ii~~h~v~~g 271 (309)
T 3gdi_A 241 YITLDTSWSSFINPWSRKISFIIGRHKVRVG 271 (309)
T ss_dssp EEEEEEEEEEEECTTTCCEEEEEEEEEEEEC
T ss_pred EEEEEEEEEEEECCCCCcccEEEEEEEEccC
Confidence 99999999999876 6778888888777765
No 154
>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...
Probab=98.17 E-value=2.2e-06 Score=81.49 Aligned_cols=102 Identities=17% Similarity=0.206 Sum_probs=69.8
Q ss_pred HHHHhCCCCCCCCccccCCCCccccchhhhHHHhCCCccccccccccccccccccccCChhhHHHHHHHHHhhhCCCCcc
Q 037299 737 KAIVHSPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGDIIGKMLVGEVFGSCCRLKGPDALTKFMIALHNAFGGQDTE 816 (1111)
Q Consensus 737 ~~i~~~~~~l~~~I~v~D~~g~ii~~N~a~~~l~G~~~eeliGk~l~~~v~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ 816 (1111)
..++++++. |++++|.+|+|++||+++++++|+++++++|+++++.+.+. ...+.-..++...+. .+. .
T Consensus 20 ~~~ld~l~~---Gii~lD~~g~I~~~N~~~e~~sG~~~~eviGk~~f~~~~~~---~~~~~f~~rf~~~~~----~g~-l 88 (125)
T 1nwz_A 20 DGQLDGLAF---GAIQLDGDGNILQYNAAEGDITGRDPKQVIGKNFFKDVAPC---TDSPEFYGKFKEGVA----SGN-L 88 (125)
T ss_dssp HHHHTTCSS---EEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGG---GCSTTTHHHHHHHHH----HTC-C
T ss_pred HHHHhccCc---eEEEECCCCEEEEEHHHHHHHhCCCHHHHcCCchhhhccch---hcccHHHHHHHHHHh----cCc-e
Confidence 345777765 99999999999999999999999999999999986655431 122333333333333 333 3
Q ss_pred eeeee-eecCCCCEEEEEEEEeeeecCCCCEEEEEe
Q 037299 817 KFPFP-LFDRNGKYVQALLTANKRVNMEGQIVGAFC 851 (1111)
Q Consensus 817 ~~e~~-~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~ 851 (1111)
..++. .++++|+ ++.++.+...+.+|...+++.
T Consensus 89 ~~~~~~v~~~~~~--p~~v~i~l~~~~~~~~~~i~v 122 (125)
T 1nwz_A 89 NTMFEYTFDYQMT--PTKVKVHMKKALSGDSYWVFV 122 (125)
T ss_dssp EEEEEEEECTTSC--CEEEEEEEEECSSSSEEEEEE
T ss_pred eEEEEEEEcCCCC--EEEEEEEEEEcCCCCEEEEEE
Confidence 33343 4488898 555555666678888776653
No 155
>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1
Probab=98.13 E-value=3e-06 Score=80.67 Aligned_cols=99 Identities=14% Similarity=0.109 Sum_probs=67.8
Q ss_pred HHhCCCCCCCCccccCCCCccccchhhhHHHhCCCccccccccccccccccccccCChhhHHHHHHHHHhhhCCCCccee
Q 037299 739 IVHSPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGDIIGKMLVGEVFGSCCRLKGPDALTKFMIALHNAFGGQDTEKF 818 (1111)
Q Consensus 739 i~~~~~~l~~~I~v~D~~g~ii~~N~a~~~l~G~~~eeliGk~l~~~v~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~ 818 (1111)
++++++. ||+++|.+|+|++||+++++++|+++++++|+++++.+.+. ...+.-..++ .+.+..+. ...
T Consensus 27 ~ld~l~~---GiivlD~dg~I~~~N~~~e~isG~s~eeviGk~~f~~~~p~---~~~~~f~grf----~~~~~~G~-l~~ 95 (129)
T 1mzu_A 27 EFDALPV---GAIQVDGSGVIHRYNRTESRLSGRIPERVIGRNFFTEVAPC---TNIPAFSGRF----MDGVTSGT-LDA 95 (129)
T ss_dssp TGGGCSS---EEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGG---GCSTTTHHHH----HHHHHTSC-CEE
T ss_pred HHhccCc---eEEEECCCCeEEEEHHHHHHHhCCCHHHHcCCchhhhccch---hcccHHHHHH----HHHHhcCc-eeE
Confidence 4566655 99999999999999999999999999999999986655431 1222323333 33333333 443
Q ss_pred eee-eecCCCCEEEEEEEEeeeecCCCCEEEEE
Q 037299 819 PFP-LFDRNGKYVQALLTANKRVNMEGQIVGAF 850 (1111)
Q Consensus 819 e~~-~~~~dG~~~~v~~~~~pi~d~~G~v~g~v 850 (1111)
++. .++++|+ ++.++.+...+.+|...+++
T Consensus 96 ~~~yv~~~~~~--p~~v~i~l~~~~~~~~~~i~ 126 (129)
T 1mzu_A 96 RFDFVFDFQMA--PVRVQIRMQNAGVPDRYWIF 126 (129)
T ss_dssp EEEEEEECSSC--EEEEEEEEEECSSTTEEEEE
T ss_pred EEEEEEcCCCC--EEEEEEEEEEcCCCCEEEEE
Confidence 343 4488888 55555566667888877665
No 156
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP}
Probab=98.13 E-value=1e-05 Score=82.83 Aligned_cols=129 Identities=3% Similarity=0.016 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhCCCeEEEEeecCCCCcEEE-EEecCCCCCCccCCCCCCCCchHHH
Q 037299 216 SQKLAVRAISQLQSLPGGDIKLLCDTVVESVRQLTGYDRVMVYRFHEDEHGEVV-AESKRPDLEPYFGLHYPATDIPQAS 294 (1111)
Q Consensus 216 ~~~~~~~~i~~l~~~~~~~~~~l~~~~~~~vr~~~g~DRVmiY~F~~d~~G~Vv-aE~~~~~~~~~lg~~~pa~dip~~a 294 (1111)
..+++.+....|.+ +.|++++++.+++.+++++|+||+.||.|+++ ....+ ++...++. .+..+| + ..-.
T Consensus 28 ~~~~L~~is~~l~~--~~dl~~il~~i~~~l~~~l~~d~~~i~l~~~~-~~~~~~~~~~~~~~---~~~~~~--~-~~~~ 98 (184)
T 3p01_A 28 QMSLLTVLVQVTQA--SNSLEAILTPIATAFAESFAVNACILQMLEGQ-TLSTIQGFYSQQGT---VNNWLN--Q-DPLT 98 (184)
T ss_dssp HHHHHHHHHHHHHH--CSSSHHHHHHHHHHHHHHHTCSEEEEEEEETT-EEEEEEEEEESSSS---CCCCGG--G-CHHH
T ss_pred HHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHhCCCeEEEEEecCC-ceeeeeeeccccCc---cCcccC--C-CcHH
Confidence 34555566666777 67999999999999999999999999999443 32222 22333332 222334 2 2334
Q ss_pred HHHHHhCCeeEeeccCCCcceeecCCCCCCcccccCccccCCChhHHHHHHhcCcceEEEEEEEEcCCCccccC-CCCCc
Q 037299 295 RFLFKQNRVRMIVDCHATPLCVIQDEGLMQPLCLVGSTLRAPHGCHAQYMANMGSIASLALAVIINGNDEEAVG-GRSTT 373 (1111)
Q Consensus 295 r~ly~~n~~r~i~d~~~~~~~~~~~~~~~~~ldls~~~lRsvsp~h~~yl~nmgv~asl~~~i~~~~~~~~~~~-~~~~~ 373 (1111)
...+..++.-+|.|+...| . .++.+++...|++|-|++||+.+|+.||... .+...
T Consensus 99 ~~~~~~~~~~~i~d~~~~~-~----------------------~~~~~~~~~~~~~s~l~vPL~~~~~~~GvL~l~~~~~ 155 (184)
T 3p01_A 99 NEAIATGQIQVAANIAKDP-K----------------------LASISQYQDNGIQSHVVIPITYRNEMLGVLSLQWQQP 155 (184)
T ss_dssp HHHHHHCSCEEESCGGGCH-H----------------------HHTCHHHHHHTCCEEEEEEEEETTEEEEEEEEEESSC
T ss_pred HHHHhhCCeEEEeccccCc-c----------------------ccchhHHHHhCccEEEEEEEEECCEEEEEEEeCcCCC
Confidence 5567778888888876554 2 1224678889999999999999988888542 22345
Q ss_pred cch
Q 037299 374 RLW 376 (1111)
Q Consensus 374 ~LW 376 (1111)
+-|
T Consensus 156 ~~f 158 (184)
T 3p01_A 156 ISL 158 (184)
T ss_dssp CCC
T ss_pred CCC
Confidence 566
No 157
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=98.12 E-value=2.7e-06 Score=74.64 Aligned_cols=94 Identities=14% Similarity=0.156 Sum_probs=64.9
Q ss_pred CCCccccCCCCccccchhhhHHHhCCCccccccccccccccccccccCChhhHHHHHHHHHhhhCCCCcceeeeeeecCC
Q 037299 747 IPPIFASDENTCCSEWNTAMEKLTGWSRGDIIGKMLVGEVFGSCCRLKGPDALTKFMIALHNAFGGQDTEKFPFPLFDRN 826 (1111)
Q Consensus 747 ~~~I~v~D~~g~ii~~N~a~~~l~G~~~eeliGk~l~~~v~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~d 826 (1111)
+.+|+++|.+|+++++|+++++++|++.++++|+++... + ... .+...+...+..+... ++.. .+
T Consensus 2 ~~~i~~~d~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~--~------~~~---~~~~~~~~~~~~~~~~--~~~~--~~ 66 (96)
T 3a0s_A 2 ETAIITLSKDGRITEWNKKAEQLFGLKKENVLGRRLKDL--P------DFE---EIGSVAESVFENKEPV--FLNF--YK 66 (96)
T ss_dssp CCEEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGGGS--T------TCH---HHHHHHHHHHHHTCCE--EEEE--EE
T ss_pred CceEEEEcCCCCEeehhHHHHHHhCCCHHHhcCCCHHHC--c------chH---HHHHHHHHHhccCCeE--EEEE--Ec
Confidence 458999999999999999999999999999999986432 1 111 1222223333222222 2222 24
Q ss_pred CCEEEEEEEEeeeecCCCC-EEEEEeeeec
Q 037299 827 GKYVQALLTANKRVNMEGQ-IVGAFCFLQI 855 (1111)
Q Consensus 827 G~~~~v~~~~~pi~d~~G~-v~g~v~~~~D 855 (1111)
|..+|+.++..|+.+.+|. +.|++++++|
T Consensus 67 ~~~~~~~~~~~p~~~~~~~~~~g~v~~~~D 96 (96)
T 3a0s_A 67 FGERYFNIRFSPFRNAKTQLLEGVIITIDD 96 (96)
T ss_dssp ETTEEEEEEEEEEECTTTCCEEEEEEEEEC
T ss_pred CCcEEEEEEEEEeEcCCCCeeeEEEEEecC
Confidence 4557899999999998664 6789988876
No 158
>2zmf_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 10A; GAF domain, phosphodiesterase, CGMP-binding, HYD nucleotide-binding, structural genomics; HET: MSE CMP; 2.10A {Homo sapiens}
Probab=98.05 E-value=3.6e-05 Score=78.27 Aligned_cols=131 Identities=10% Similarity=0.101 Sum_probs=89.3
Q ss_pred HHHHHHH-hhcCCCCCHHHHHHHHHHHHHHhhCCCeEEEEeecCCCCcEEEEEecCCCC-------CCccCCCCCCCCch
Q 037299 220 AVRAISQ-LQSLPGGDIKLLCDTVVESVRQLTGYDRVMVYRFHEDEHGEVVAESKRPDL-------EPYFGLHYPATDIP 291 (1111)
Q Consensus 220 ~~~~i~~-l~~~~~~~~~~l~~~~~~~vr~~~g~DRVmiY~F~~d~~G~VvaE~~~~~~-------~~~lg~~~pa~dip 291 (1111)
+.+.... +.+ ..|++++++.+++++++++|+||+.||-+++|+..-+..-...... ...-..++|...
T Consensus 15 Ll~~~~~i~~~--~~dld~ll~~i~~~~~~~l~ad~~~i~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 90 (189)
T 2zmf_A 15 LLDVSKTYFDN--IVAIDSLLEHIMIYAKNLVNADRCALFQVDHKNKELYSDLFDIGEEKEGKPVFKKTKEIRFSIEK-- 90 (189)
T ss_dssp HHHHHHHHHHC--SSCHHHHHHHHHHHHHHHHTEEEEEEEEEETTTTEEEEEEECCSCEETTEECCEECCCCEEETTS--
T ss_pred HHHHHHHHHHc--cCCHHHHHHHHHHHHHHHhCCCEEEEEEEecCCcEEEEEEEecccccccccccccccccccCCCc--
Confidence 3344433 344 5699999999999999999999999999999887655443322211 122223344332
Q ss_pred HHHHHHHHhCCeeEeeccCCCcceeecCCCCCCcccccCccccCCChhHHHHHHhcCcceEEEEEEEEcCCCcccc--CC
Q 037299 292 QASRFLFKQNRVRMIVDCHATPLCVIQDEGLMQPLCLVGSTLRAPHGCHAQYMANMGSIASLALAVIINGNDEEAV--GG 369 (1111)
Q Consensus 292 ~~ar~ly~~n~~r~i~d~~~~~~~~~~~~~~~~~ldls~~~lRsvsp~h~~yl~nmgv~asl~~~i~~~~~~~~~~--~~ 369 (1111)
.-+...+..+..-.|+|+...|.. +.+......+++++.|++||+.+|+.+|.. ..
T Consensus 91 ~~~~~v~~~~~~~~i~d~~~~~~~----------------------~~~~~~~~~~~~~s~l~vPl~~~~~~~Gvl~l~~ 148 (189)
T 2zmf_A 91 GIAGQVARTGEVLNIPDAYADPRF----------------------NREVDLYTGYTTRNILCMPIVSRGSVIGVVQMVN 148 (189)
T ss_dssp HHHHHHHHHCCCEEESCGGGSTTC----------------------CTHHHHHHCCCCCCEEEEEEEETTEEEEEEEEEE
T ss_pred cHHHHHHHhCCeEEEecccccccc----------------------cccchhhcccccceEEEeeecccCceeeEEEEEE
Confidence 123455677788888887655533 456677888999999999999998888865 23
Q ss_pred CCCccch
Q 037299 370 RSTTRLW 376 (1111)
Q Consensus 370 ~~~~~LW 376 (1111)
+..++-|
T Consensus 149 ~~~~~~f 155 (189)
T 2zmf_A 149 KISGSAF 155 (189)
T ss_dssp ETTSSSC
T ss_pred cCCCCCc
Confidence 3455666
No 159
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=98.01 E-value=3e-06 Score=87.17 Aligned_cols=106 Identities=14% Similarity=0.113 Sum_probs=75.0
Q ss_pred HHHHHHHHHhCCCCCCCCccccCCCCccccchhhhHHHhCCCccccccccccccccccccccCChhhHHHHHHHHHhhhC
Q 037299 732 IQGDYKAIVHSPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGDIIGKMLVGEVFGSCCRLKGPDALTKFMIALHNAFG 811 (1111)
Q Consensus 732 se~~l~~i~~~~~~l~~~I~v~D~~g~ii~~N~a~~~l~G~~~eeliGk~l~~~v~~~~~~l~~~~~~~~~~~~l~~~~~ 811 (1111)
....++.+++++++ ||+++|.+|+|+++|+++++++|++.++++|+++...+ + +.... ..+. .
T Consensus 78 ~~~~l~~il~~~~~---gvi~~D~~g~I~~~N~aa~~llg~~~~~~~g~~~~~~~-~-------~~~~~---~~~~---~ 140 (190)
T 2jhe_A 78 EHLALSALLEALPE---PVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLI-N-------GFNFL---RWLE---S 140 (190)
T ss_dssp HHHHHHHHHHHCSS---CEEEECTTCBEEEECHHHHHHHTSCHHHHTTSBGGGTS-T-------TCCHH---HHHH---T
T ss_pred HHHHHHHHHHhCCC---cEEEEcCCCCEEEEcHHHHHHhCCCHHHhcCccHHHHh-C-------CCCHH---HHHh---c
Confidence 44578889999887 89999999999999999999999999999999874322 1 21111 1121 1
Q ss_pred CC-CcceeeeeeecCCCCEEEEEEEEeeeecCCCC----EEEEEeeeecccHH
Q 037299 812 GQ-DTEKFPFPLFDRNGKYVQALLTANKRVNMEGQ----IVGAFCFLQIASPE 859 (1111)
Q Consensus 812 ~~-~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~----v~g~v~~~~DITer 859 (1111)
+. .....++.+ +|+ ++.++..|+.+.+|. +.|++.+++|||+.
T Consensus 141 ~~~~~~~~~~~~---~g~--~~~~~~~pi~~~~~~~~~~~~g~v~~~~DiTe~ 188 (190)
T 2jhe_A 141 EPQDSHNEHVVI---NGQ--NFLMEITPVYLQDENDQHVLTGAVVMLRSTIRM 188 (190)
T ss_dssp CCCSCEEEEEEE---TTE--EEEEEEEEETTTTEEEEEEEE-HHHHHHHHTTT
T ss_pred CCCCCcceEEEE---CCe--EEEEEEEEEEecCCCCcceEEeEEEEEeccchh
Confidence 22 223333333 664 466778898876666 88999999999974
No 160
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=97.98 E-value=3.8e-05 Score=79.13 Aligned_cols=142 Identities=11% Similarity=0.096 Sum_probs=82.7
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhccccccccCCcceeeEeecHHHHHHH
Q 037299 878 LKELAYICQEIKNPLSGVSFTNSLLEATDLTEDQKQLLETSAACEKQMLKIIKDVDLESIEDGSLEFEKAEFLLGSVINA 957 (1111)
Q Consensus 878 ~~~La~isHEIrnPLt~I~~~~~LL~~~~l~e~~~~~l~~i~~~~~~l~~lI~dLdlsri~~g~~~l~~~~~~L~~vi~~ 957 (1111)
...++..+||..|-|+.|.|++++=+ -++..+|+..+....+....+. .+ +. ..+..
T Consensus 22 ~~~LR~qrHdf~NkLqvI~GLlql~~----ydea~~yI~~~~~~~q~~~~~~-~i-------~~-----------P~la~ 78 (192)
T 1ixm_A 22 IHLLGHSRHDWMNKLQLIKGNLSLQK----YDRVFEMIEEMVIDAKHESKLS-NL-------KT-----------PHLAF 78 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHHHHHHH-TT-------TC-----------HHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHHHHHHHHHH-hC-------CC-----------HHHHH
Confidence 34577789999999999999998743 3567777777666555544321 12 10 12333
Q ss_pred HHHHHHHHhhccCcEE-EeecCCcccceEEEecHHHHHHHHHHHHHHHhhc--CCCCCceEEEEEEEc--cccCCCCcee
Q 037299 958 VVSQVMMLLRERNLQL-IRDIPEEIKTLAVYGDQARIQQVLADFLLNMVRY--SPSAEGWVEIHVRPT--LKQSSEGQTI 1032 (1111)
Q Consensus 958 v~~~~~~~~~~~~i~l-~~~~~~~~~~~~v~~D~~~L~qVl~nLl~NAik~--t~~~~g~I~I~v~~~--~~~~~~~~~~ 1032 (1111)
++-.-...+++.++++ .++.+..++ ..+..+..++ +.+.||+.. .+...+.|.|++... ++
T Consensus 79 lLl~K~~~a~e~~i~lev~~~~s~l~-----~~~~~lgnLi-~na~~Ai~~~~~~~~~~~I~i~i~~~~~~~-------- 144 (192)
T 1ixm_A 79 DFLTFNWKTHYMTLEYEVLGEIKDLS-----AYDQKLAKLM-RKLFHLFDQAVSRESENHLTVSLQTDHPDR-------- 144 (192)
T ss_dssp HHHHGGGSCCSSEEEEEEESSCCCCT-----TTHHHHHHHH-HHHHHHHHHHBCTTSCCEEEEEEECCCSSS--------
T ss_pred HHHHHHHHhccCCeEEEEecCccccC-----CCcHHHHHHH-HHHHHHHHhhhccCCCCeEEEEEEEecCCC--------
Confidence 3333333344445555 334444443 2233443333 223445543 233357899988765 44
Q ss_pred EEEEEEEeeCCCCCChhhhhhccCC
Q 037299 1033 VHNEFRMVCPGEGLPPELVQDMFHS 1057 (1111)
Q Consensus 1033 ~~v~i~V~DnG~GIp~e~~~~iFep 1057 (1111)
.+.|.|.|+|++|+++.++++|++
T Consensus 145 -~l~i~V~d~G~~i~~e~~~~if~~ 168 (192)
T 1ixm_A 145 -QLILYLDFHGAFADPSAFDDIRQN 168 (192)
T ss_dssp -SCEEEEEEESCBSCGGGCC-----
T ss_pred -EEEEEEEeCCCCCCHHHHHHHHhC
Confidence 678999999999999999999975
No 161
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=97.98 E-value=2.2e-05 Score=88.13 Aligned_cols=80 Identities=11% Similarity=0.125 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHhhcCCCCCceEEEEEEEccccCCCCceeEEEEEEEeeCCCCCChhhhhhccCCCCCCC---------
Q 037299 992 RIQQVLADFLLNMVRYSPSAEGWVEIHVRPTLKQSSEGQTIVHNEFRMVCPGEGLPPELVQDMFHSSRWMT--------- 1062 (1111)
Q Consensus 992 ~L~qVl~nLl~NAik~t~~~~g~I~I~v~~~~~~~~~~~~~~~v~i~V~DnG~GIp~e~~~~iFepf~~~~--------- 1062 (1111)
++.+++.||+.||+++.. +.|.|.+.. ++ ...|+|.|||+|||++.++.+|++|++++
T Consensus 28 ~~~~vv~eLv~NAidA~a---~~I~I~i~~-~~---------~~~I~V~DnG~GI~~~~l~~~~~~~~tsK~~~~~dl~~ 94 (348)
T 3na3_A 28 RPANAIKEMIENCLDAKS---TSIQVIVKE-GG---------LKLIQIQDNGTGIRKEDLDIVCERFTTSKLQSFEDLAS 94 (348)
T ss_dssp SHHHHHHHHHHHHHHTTC---SEEEEEEEG-GG---------TSEEEEEECSCCCCGGGGGTTTSTTCCSSCCCC-----
T ss_pred CHHHHHHHHHHHHHHcCC---CEEEEEEEe-CC---------EEEEEEEECCcCcChHHhhhhhccccccccCcchhhhc
Confidence 467999999999999953 678888742 12 34689999999999999999999974332
Q ss_pred ----C-ccchHHHHHHHHHHcCCEEEEEecCC
Q 037299 1063 ----Q-EGLGLSMCRKILKLMNGEVQYIRESE 1089 (1111)
Q Consensus 1063 ----G-~GLGL~i~r~iVe~~gG~I~v~s~~g 1089 (1111)
| .|.||+-+-.+ . ++.+.+...
T Consensus 95 i~s~GfrGeaL~Si~av----s-~l~v~sr~~ 121 (348)
T 3na3_A 95 ISTYGFRGEALASISHV----A-HVTITTKTA 121 (348)
T ss_dssp ----CCTTCHHHHHHHS----S-EEEEEEECT
T ss_pred cccCCcCChHHHHhhcc----c-EEEEEEEEC
Confidence 2 27788766332 2 677776543
No 162
>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens}
Probab=97.97 E-value=4.6e-05 Score=75.90 Aligned_cols=122 Identities=16% Similarity=0.153 Sum_probs=86.8
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHHHhhCCCeEEEEeecCCCCcEEEEEecCCCCCCccCCCCCCCCchHHHHHHHHhCCee
Q 037299 225 SQLQSLPGGDIKLLCDTVVESVRQLTGYDRVMVYRFHEDEHGEVVAESKRPDLEPYFGLHYPATDIPQASRFLFKQNRVR 304 (1111)
Q Consensus 225 ~~l~~~~~~~~~~l~~~~~~~vr~~~g~DRVmiY~F~~d~~G~VvaE~~~~~~~~~lg~~~pa~dip~~ar~ly~~n~~r 304 (1111)
..|.+ +.+++++++.+++.+++++|+||+.+|-++++...-++.-...+.-+..-+..||-.+=..-....+..+..-
T Consensus 9 ~~l~~--~~~~~~~l~~~~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (169)
T 3oov_A 9 SRIQK--SIDVDEVLRLCAEGLHDVLGYERVNILMADTARTSLSFVAAVGTADFNPAGVVLPLDQRGGVITKCFTDRQVY 86 (169)
T ss_dssp HHHHH--CCCHHHHHHHHHHHHHHTTCCSEEEEEEECTTSSEEEEEEEESCSSCCCTTCEEESSGGGHHHHHHHHHTCCE
T ss_pred HHHhh--hcCHHHHHHHHHHHHHHhhCCceEEEEEEeCCCCeEEEEEEeCchhhhhhcccCCcccccchHHHHHhcCCCE
Confidence 34444 5699999999999999999999999999998875544444444443445566776543345567777888888
Q ss_pred EeeccCCCcceeecCCCCCCcccccCccccCCChhHHHHHHhcCcceEEEEEEEEcCCCcccc
Q 037299 305 MIVDCHATPLCVIQDEGLMQPLCLVGSTLRAPHGCHAQYMANMGSIASLALAVIINGNDEEAV 367 (1111)
Q Consensus 305 ~i~d~~~~~~~~~~~~~~~~~ldls~~~lRsvsp~h~~yl~nmgv~asl~~~i~~~~~~~~~~ 367 (1111)
+|.|+...|-..-+.+ ..+++...|+++-|++||+.+|+.+|..
T Consensus 87 ~i~d~~~~~~~~~~~~-------------------~~~~~~~~~~~s~l~vPl~~~~~~iGvl 130 (169)
T 3oov_A 87 MIDDVSAYPTDFRLQS-------------------PYDAIRALRSKSFVICPIVVKGEAIGVF 130 (169)
T ss_dssp EESCGGGSCGGGSCCT-------------------TGGGCGGGCCSSEEEEEEEETTEEEEEE
T ss_pred Eeccccchhhhhhccc-------------------cHHHHHhcCcCcEEEEEEEeCCcEEEEE
Confidence 8988865543211000 0234667899999999999998888865
No 163
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=97.95 E-value=0.00047 Score=79.62 Aligned_cols=303 Identities=11% Similarity=0.123 Sum_probs=160.3
Q ss_pred HHHHHHHhhcCCCCCHHH----HHHHHHHHHHHhhCCCeEEEEeecCCCCcEEEEEecCCCCCCccCCCCCCCCchHHHH
Q 037299 220 AVRAISQLQSLPGGDIKL----LCDTVVESVRQLTGYDRVMVYRFHEDEHGEVVAESKRPDLEPYFGLHYPATDIPQASR 295 (1111)
Q Consensus 220 ~~~~i~~l~~~~~~~~~~----l~~~~~~~vr~~~g~DRVmiY~F~~d~~G~VvaE~~~~~~~~~lg~~~pa~dip~~ar 295 (1111)
+.+.+..+.+ .+++. +++.+++.+++++|+||+.||.++++. ++....+....-....+.++|... --+.
T Consensus 11 l~~~~~~l~~---~~l~~~l~~~l~~i~~~~~~~~~a~~~~i~l~d~~~-~~l~~~~~~g~~~~~~~~~~~~~~--g~~g 84 (398)
T 1ykd_A 11 VHQTLSMLDS---HGFENILQEMLQSITLKTGELLGADRTTIFLLDEEK-QELWSIVAAGEGDRSLEIRIPADK--GIAG 84 (398)
T ss_dssp HHHHHHHHTT---SCHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEETTT-TEEEEEEECCGGGCCCCCEEETTS--HHHH
T ss_pred HHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHhCCceEEEEEEECCC-CeEEEEeecCCCCccceeecCCCC--chhh
Confidence 3344444433 35554 666777779999999999999999875 455555544322344566776542 2344
Q ss_pred HHHHhCCeeEeeccCCCcceeecCCCCCCcccccCccccCCChhHHHHHHhcCcceEEEEEEEE-cCCCccccC--CC--
Q 037299 296 FLFKQNRVRMIVDCHATPLCVIQDEGLMQPLCLVGSTLRAPHGCHAQYMANMGSIASLALAVII-NGNDEEAVG--GR-- 370 (1111)
Q Consensus 296 ~ly~~n~~r~i~d~~~~~~~~~~~~~~~~~ldls~~~lRsvsp~h~~yl~nmgv~asl~~~i~~-~~~~~~~~~--~~-- 370 (1111)
..+..+..-.|+|+....- |.--+.+...+..+++++-|++||+. +|+.+|... ..
T Consensus 85 ~v~~~~~~v~i~d~~~~~~-------------------~~~~~~~~~~~~~~~~~s~l~vPl~~~~g~~iGvl~l~~~~~ 145 (398)
T 1ykd_A 85 EVATFKQVVNIPFDFYHDP-------------------RSIFAQKQEKITGYRTYTMLALPLLSEQGRLVAVVQLLNKLK 145 (398)
T ss_dssp HHHHHCCCEEECSCGGGSG-------------------GGHHHHHHHHHHCCCCSCEEEEEEECSSCCEEEEEEEEEEBC
T ss_pred hhhccCcEEeccchhcccc-------------------hhhcccccCcccCcCCceEEEEEEECCCCCEEEEEEEeccCC
Confidence 5566677777888754310 00014445556678899999999996 688898652 21
Q ss_pred ------------CCccch---------HhhHhhcHHHHHHHHH-----HHHHHHHHHHHHHHHhc-cCCCCccccC-Ccc
Q 037299 371 ------------STTRLW---------AFGLQLNMELQLASQL-----SEKHVLRTQTLLCDMLL-RDSPAGIVTQ-SPS 422 (1111)
Q Consensus 371 ------------~~~~LW---------~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~ 422 (1111)
...+-| .++-+++..++..+.. ..++...+.++...+.. ......+... ...
T Consensus 146 ~~~~~~~~l~~~~~~~~f~~~d~~~l~~~a~~~~~al~~~~l~~~~~~~~~~l~~L~~~~~~l~~~~~dl~~~l~~i~~~ 225 (398)
T 1ykd_A 146 PYSPPDALLAERIDNQGFTSADEQLFQEFAPSIRLILESSRSFYIATQKQRAAAAMMKAVKSLSQSSLDLEDTLKRVMDE 225 (398)
T ss_dssp SCCCTTCCHHHHBCTTCCCHHHHHHGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred cccccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence 134555 2333333222222111 11111222222222222 1122222211 235
Q ss_pred hhhhccCCEEEEEEC----CeEEEecC----------CCCHHHHHHHHHHHHhccCCCeeEee-cccccCCCCCc----c
Q 037299 423 IMDLVKCDGAALYYQ----GKYYPLGV----------TPTETQIKDIVEWLLTYHGDSTGLST-DSLADAGYPKA----A 483 (1111)
Q Consensus 423 l~~~~~a~g~a~~~~----~~~~~~g~----------~p~~~~i~~l~~~l~~~~~~~~~~~t-~~l~~~~~p~~----~ 483 (1111)
+.++++|+++.|+.- +.++.... .|.. ..++.|...... .++.. |.-.+..|... .
T Consensus 226 ~~~~~~~~~~~i~l~d~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~--~~~i~~d~~~~~~~~~~~~~~~ 300 (398)
T 1ykd_A 226 AKELMNADRSTLWLIDRDRHELWTKITQDNGSTKELRVPIG---KGFAGIVAASGQ--KLNIPFDLYDHPDSATAKQIDQ 300 (398)
T ss_dssp HHHHTTEEEEEEEEEETTTTEEEEEEECSSSCEEEEEEETT---SHHHHHHHHHCC--CEEECSCGGGSTTCHHHHHHHH
T ss_pred HHHHhCcCeEEEEEEECCCCEEEEEEecCCCceeeeeccCC---CchhhHHhccCC--eEEeccccccCcccCcccchhh
Confidence 677889998887652 23443321 1111 245666655532 33333 32221112111 0
Q ss_pred ccccceeeEEEEEeC-CCc----EEEEeecCCCcEEEecCCCCCCCCCCCCCCccccchhHHHHHHHhccccCCchhHHH
Q 037299 484 TLGDAVCGMAVAYIT-KRD----FLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWDNAEMD 558 (1111)
Q Consensus 484 ~~~~~~~G~l~~~~~-~~~----~~~wfr~e~~~~v~Wag~p~~~~~~~~g~~l~pr~SF~~w~e~v~g~s~pW~~~El~ 558 (1111)
..+-....++++||- .++ .|..++... .|+ .|+.+|+.|.+...+...+|...++.
T Consensus 301 ~~~~~~~s~l~vPl~~~~~~~iGvl~l~~~~~------~~~-------------~~~~~~~~~~~~~~~~~~~f~~~d~~ 361 (398)
T 1ykd_A 301 QNGYRTCSLLCMPVFNGDQELIGVTQLVNKKK------TGE-------------FPPYNPETWPIAPECFQASFDRNDEE 361 (398)
T ss_dssp HHTCCCCCEEEEEEECSSSCEEEEEEEEEECC------SSC-------------CCCCCGGGTTCCCGGGCCCCCHHHHH
T ss_pred hcCCeeeeEEEEeeecCCCCEEEEEEEEecCC------ccc-------------ccccccccccccccccCCCCCHHHHH
Confidence 012235678999986 221 222222211 011 24556788999888889999999999
Q ss_pred HHHHHHHHHHHHH
Q 037299 559 AIHSLQLILRDSF 571 (1111)
Q Consensus 559 aa~~Lrl~L~~~l 571 (1111)
.+..+...+.-++
T Consensus 362 ll~~la~~~a~al 374 (398)
T 1ykd_A 362 FMEAFNIQAGVAL 374 (398)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8887755444444
No 164
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=97.95 E-value=6.3e-06 Score=94.60 Aligned_cols=77 Identities=12% Similarity=0.208 Sum_probs=58.2
Q ss_pred EecHHHHHHHHHHHHHHHhhcCCCCCceEEEEEEEccccCCCCceeEEEEEEEeeCCCCCChhhhhh--------ccCCC
Q 037299 987 YGDQARIQQVLADFLLNMVRYSPSAEGWVEIHVRPTLKQSSEGQTIVHNEFRMVCPGEGLPPELVQD--------MFHSS 1058 (1111)
Q Consensus 987 ~~D~~~L~qVl~nLl~NAik~t~~~~g~I~I~v~~~~~~~~~~~~~~~v~i~V~DnG~GIp~e~~~~--------iFepf 1058 (1111)
.++...+.+++.|++.||+++. .+.|.|++.... .|+|.|||+|||++.+++ +|..+
T Consensus 31 ~g~~~~v~Elv~N~iD~a~~~~---~~~I~V~i~~~~------------~i~V~DnG~GIp~~~~~~~~~~~~e~if~~~ 95 (390)
T 1kij_A 31 EGYHHLFKEILDNAVDEALAGY---ATEILVRLNEDG------------SLTVEDNGRGIPVDLMPEEGKPAVEVIYNTL 95 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS---CCEEEEEECTTS------------CEEEEECSSCCCCSEETTTTEEHHHHHHHSS
T ss_pred chHHHHHHHHHHHHHHHhhhCC---CCEEEEEEEcCC------------EEEEEEcCCCCCHHHhhhccccchhhheeee
Confidence 4677888889999999998742 467888764321 589999999999999877 78653
Q ss_pred C------------CCCCccchHHHHHHHHHHc
Q 037299 1059 R------------WMTQEGLGLSMCRKILKLM 1078 (1111)
Q Consensus 1059 ~------------~~~G~GLGL~i~r~iVe~~ 1078 (1111)
. ..++.|+||++|..+.+.+
T Consensus 96 ~~~~kf~~~~~~~s~G~~G~Gls~v~als~~~ 127 (390)
T 1kij_A 96 HSGGKFEQGAYKVSGGLHGVGASVVNALSEWT 127 (390)
T ss_dssp CEESGGGGSSCCCCSCSSTTSHHHHHHTEEEE
T ss_pred eecccccCccccccCCCCCcceeeecccccce
Confidence 1 1235799999999998643
No 165
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=97.94 E-value=1.5e-05 Score=90.62 Aligned_cols=70 Identities=10% Similarity=0.095 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCCceEEEEEEEccccCCCCceeEEEEEEEeeCCCCCChhhhhhccCCCCCC----------
Q 037299 992 RIQQVLADFLLNMVRYSPSAEGWVEIHVRPTLKQSSEGQTIVHNEFRMVCPGEGLPPELVQDMFHSSRWM---------- 1061 (1111)
Q Consensus 992 ~L~qVl~nLl~NAik~t~~~~g~I~I~v~~~~~~~~~~~~~~~v~i~V~DnG~GIp~e~~~~iFepf~~~---------- 1061 (1111)
++.+++.||+.||+++.. +.|.|.+... + ...|+|.|||+|||++.++++|++|.+.
T Consensus 34 ~~~~vl~eLv~NAiDA~a---~~I~I~i~~~-~---------~~~I~V~DnG~Gi~~~~l~~~f~~~~tsK~~~~~dl~~ 100 (365)
T 1h7s_A 34 SLSTAVKELVENSLDAGA---TNIDLKLKDY-G---------VDLIEVSDNGCGVEEENFEGLTLKHHTSKIQEFADLTQ 100 (365)
T ss_dssp CHHHHHHHHHHHHHHTTC---SEEEEEEEGG-G---------TSEEEEEECSCCCCGGGSGGGGC----------CCTTC
T ss_pred hHHHHHHHHHHHHHHCCC---CEEEEEEEeC-C---------cEEEEEEECCCCcCHHHHHHHhhhccccccccccchhc
Confidence 468999999999999864 5788877532 2 2468999999999999999999997321
Q ss_pred ---CCc-cchHHHHHHH
Q 037299 1062 ---TQE-GLGLSMCRKI 1074 (1111)
Q Consensus 1062 ---~G~-GLGL~i~r~i 1074 (1111)
.|. |+||+.+..+
T Consensus 101 i~s~G~rG~gl~si~~v 117 (365)
T 1h7s_A 101 VETFGFRGEALSSLCAL 117 (365)
T ss_dssp SEEESSSSSHHHHHHHH
T ss_pred ccccCCCCchhhhhhhh
Confidence 133 8899887543
No 166
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=97.93 E-value=1.4e-05 Score=90.06 Aligned_cols=78 Identities=12% Similarity=0.147 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHhhcCCCCCceEEEEEEEccccCCCCceeEEEEEEEeeCCCCCChhhhhhccCCCCC-----------
Q 037299 992 RIQQVLADFLLNMVRYSPSAEGWVEIHVRPTLKQSSEGQTIVHNEFRMVCPGEGLPPELVQDMFHSSRW----------- 1060 (1111)
Q Consensus 992 ~L~qVl~nLl~NAik~t~~~~g~I~I~v~~~~~~~~~~~~~~~v~i~V~DnG~GIp~e~~~~iFepf~~----------- 1060 (1111)
++.+++.||+.||+++.. ..|.|.+...+ ...|+|.|||+|||++.+..+|++|.+
T Consensus 24 ~~~~~v~ELi~NaidA~a---~~I~I~i~~~~----------~~~i~V~DnG~Gi~~~~l~~~~~~~~tsK~~~~~d~~~ 90 (333)
T 1b63_A 24 RPASVVKELVENSLDAGA---TRIDIDIERGG----------AKLIRIRDNGCGIKKDELALALARHATSKIASLDDLEA 90 (333)
T ss_dssp SHHHHHHHHHHHHHHTTC---SEEEEEEEGGG----------TSEEEEEECSCCCCGGGHHHHHSTTCCSSCCSHHHHHT
T ss_pred CHHHHHHHHHHHHHHCCC---CeEEEEEEeCC----------ceEEEEEEcCCCcCHHHHHHhhhcccccCccccchhhh
Confidence 467999999999999874 57888775321 236899999999999999999998632
Q ss_pred ---CCCccchHHHHHHHHHHcCCEEEEEec
Q 037299 1061 ---MTQEGLGLSMCRKILKLMNGEVQYIRE 1087 (1111)
Q Consensus 1061 ---~~G~GLGL~i~r~iVe~~gG~I~v~s~ 1087 (1111)
.++.|+||+.+..+ +++.+.|.
T Consensus 91 ~~~~G~~G~gl~si~~v-----s~l~v~s~ 115 (333)
T 1b63_A 91 IISLGFRGEALASISSV-----SRLTLTSR 115 (333)
T ss_dssp CCSSCCSSCHHHHHHTT-----SEEEEEEE
T ss_pred ccccCccccchhhhhcC-----CcEEEEEe
Confidence 13479999987433 24555544
No 167
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=97.83 E-value=0.00046 Score=85.99 Aligned_cols=128 Identities=16% Similarity=0.110 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhCCCeEEEEeecCCCCcEEEEEecCC-CCCCccCCCCCCCCchHHH
Q 037299 216 SQKLAVRAISQLQSLPGGDIKLLCDTVVESVRQLTGYDRVMVYRFHEDEHGEVVAESKRP-DLEPYFGLHYPATDIPQAS 294 (1111)
Q Consensus 216 ~~~~~~~~i~~l~~~~~~~~~~l~~~~~~~vr~~~g~DRVmiY~F~~d~~G~VvaE~~~~-~~~~~lg~~~pa~dip~~a 294 (1111)
..+.+.+++..|. ..+++++++++++.+++++|+||+.||.|++|+. +.+...... .++. ..+||.. --.
T Consensus 13 ~~~~L~~i~~~ls---~ldl~~ll~~il~~l~~~l~ad~~~i~L~d~~~~-~l~~~~~~g~~~~~--~~~~p~~---Gi~ 83 (691)
T 3ibj_A 13 RDRKILQLCGELY---DLDASSLQLKVLQYLQQETRASRCCLLLVSEDNL-QLSCKVIGDKVLGE--EVSFPLT---GCL 83 (691)
T ss_dssp HHHHHHHHHHHCC---CSSHHHHHHHHHHHHHHHTTBSCEEEEEECTTSS-EEEEEEETTEEEEE--EEEEECC---SSS
T ss_pred HHHHHHHHHHHHH---hccHHHHHHHHHHHHHHHhCCCEEEEEEEECCCC-eEEEEecCCCcccc--ceecCCc---cHH
Confidence 3445556666665 4599999999999999999999999999999854 444332222 1221 2344433 233
Q ss_pred HHHHHhCCeeEeeccCCCcceeecCCCCCCcccccCccccCCChhHHHHHHhcCcceEEEEEEEEc--CCCccccC--CC
Q 037299 295 RFLFKQNRVRMIVDCHATPLCVIQDEGLMQPLCLVGSTLRAPHGCHAQYMANMGSIASLALAVIIN--GNDEEAVG--GR 370 (1111)
Q Consensus 295 r~ly~~n~~r~i~d~~~~~~~~~~~~~~~~~ldls~~~lRsvsp~h~~yl~nmgv~asl~~~i~~~--~~~~~~~~--~~ 370 (1111)
...+..++.-.|+|+...| ..+..++...+++|-|++||+.+ |+.||+.+ .+
T Consensus 84 g~v~~~~~pv~i~d~~~~~------------------------~~~~~~~~~~~~~S~L~vPI~~~~~g~viGvL~l~~~ 139 (691)
T 3ibj_A 84 GQVVEDKKSIQLKDLTSED------------------------VQQLQSMLGCELQAMLCVPVISRATDQVVALACAFNK 139 (691)
T ss_dssp HHHHHHCCCEEGGGSCHHH------------------------HHHHHHHHTSCCSCEEEEEEECSSSCSEEEEEEEESB
T ss_pred HHHHHHCCeEEeccchhcc------------------------ccccccccCCccceEEEEEeEcCCCCcEEEEEEEEcC
Confidence 4455666666677764322 23566777888999999999998 99999763 33
Q ss_pred CCccch
Q 037299 371 STTRLW 376 (1111)
Q Consensus 371 ~~~~LW 376 (1111)
..++-|
T Consensus 140 ~~~~~f 145 (691)
T 3ibj_A 140 LEGDLF 145 (691)
T ss_dssp SSSCCC
T ss_pred CCCCCC
Confidence 344445
No 168
>2e4s_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; GAF domain, structural genomics, NPPSFA; HET: MSE CMP; 2.10A {Homo sapiens} PDB: 2zmf_A*
Probab=97.71 E-value=0.00013 Score=74.13 Aligned_cols=124 Identities=11% Similarity=0.153 Sum_probs=85.8
Q ss_pred HHHHHHHHHHhhcCCC-CCHHHHHHHHHHHHHHhhCCCeEEEEeecCCCCcEEEEEecCCC-------C-CCccCCCCCC
Q 037299 217 QKLAVRAISQLQSLPG-GDIKLLCDTVVESVRQLTGYDRVMVYRFHEDEHGEVVAESKRPD-------L-EPYFGLHYPA 287 (1111)
Q Consensus 217 ~~~~~~~i~~l~~~~~-~~~~~l~~~~~~~vr~~~g~DRVmiY~F~~d~~G~VvaE~~~~~-------~-~~~lg~~~pa 287 (1111)
.+.+.+....|.+ + .|++++++.+++.+++++|+|++.||-++++.. +.+......+ + +...+.++|.
T Consensus 12 ~~~L~~~~~~l~~--~~~d~~~~l~~i~~~~~~~~~a~~~~i~l~d~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (189)
T 2e4s_A 12 NDFLLDVSKTYFD--NIVAIDSLLEHIMIYAKNLVNADRCALFQVDHKNK-ELYSDLFDIGEEKEGKPVFKKTKEIRFSI 88 (189)
T ss_dssp HHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHTEEEEEEEEEETTTT-EEEEEEEEEEEEETTEEEEEECCCCEEET
T ss_pred HHHHHHHHHHHHh--cccCHHHHHHHHHHHHHHHhCCCeEEEEEEECCCC-EEEEEEeccCccccccccccCCcceEeeC
Confidence 3444555555544 4 499999999999999999999999999998754 4443321111 1 2344556654
Q ss_pred CCchHHHHHHHHhCCeeEeeccCCCcceeecCCCCCCcccccCccccCCChhHHHHHHhcCcceEEEEEEEEcCCCcccc
Q 037299 288 TDIPQASRFLFKQNRVRMIVDCHATPLCVIQDEGLMQPLCLVGSTLRAPHGCHAQYMANMGSIASLALAVIINGNDEEAV 367 (1111)
Q Consensus 288 ~dip~~ar~ly~~n~~r~i~d~~~~~~~~~~~~~~~~~ldls~~~lRsvsp~h~~yl~nmgv~asl~~~i~~~~~~~~~~ 367 (1111)
. ..-+...+..+..-+|+|+...|-- +.+..++..+++++-|++||+.+|+.+|..
T Consensus 89 ~--~~~~~~v~~~~~~~~i~d~~~~~~~----------------------~~~~~~~~~~~~~s~l~vPl~~~~~~iGvl 144 (189)
T 2e4s_A 89 E--KGIAGQVARTGEVLNIPDAYADPRF----------------------NREVDLYTGYTTRNILCMPIVSRGSVIGVV 144 (189)
T ss_dssp T--SHHHHHHHHHCCCEEESCGGGSTTC----------------------CTHHHHHHCCCCCCEEEEEEEETTEEEEEE
T ss_pred C--CcHHHHHHHhCCEEEecCCCcCccc----------------------ChhhccccCCccceEEEEEeccCCeEEEEE
Confidence 3 2345666777888788887554321 344566778999999999999998888865
No 169
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=97.70 E-value=0.00013 Score=83.31 Aligned_cols=128 Identities=13% Similarity=0.037 Sum_probs=88.1
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhCCCeEEEEeecCCCCcEEEEEecCCCCCCccCCCCCCCCchHHHHHH
Q 037299 218 KLAVRAISQLQSLPGGDIKLLCDTVVESVRQLTGYDRVMVYRFHEDEHGEVVAESKRPDLEPYFGLHYPATDIPQASRFL 297 (1111)
Q Consensus 218 ~~~~~~i~~l~~~~~~~~~~l~~~~~~~vr~~~g~DRVmiY~F~~d~~G~VvaE~~~~~~~~~lg~~~pa~dip~~ar~l 297 (1111)
+.+.+....| + +.|++++++.+++.+++++|+||+.||.|++|+. +.++.+.... ...-+.++|...=+ ....
T Consensus 14 ~~l~~l~~~l-~--~~dl~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~-~l~~~~~~g~-~~~~~~~~~~~~g~--~g~~ 86 (368)
T 1mc0_A 14 RKILQLCGEL-F--DLDATSLQLKVLQYLQQETQATHCCLLLVSEDNL-QLSCKVIGDK-VLGEEVSFPLTMGR--LGQV 86 (368)
T ss_dssp HHHHHHHHTC-C--CSSHHHHHHHHHHHHHHHSCEEEEEEEEECSSSC-EEEEEEETTE-EEEEEEEEESSSSS--HHHH
T ss_pred HHHHHHHHHH-h--hhhHHHHHHHHHHHHHHHhCCcEEEEEEEeCCCC-eEEEEecCCC-ccccceeeccccCH--HHHH
Confidence 3445566666 4 5699999999999999999999999999998864 5655554321 22223445543211 2445
Q ss_pred HHhCCeeEeeccCCCcceeecCCCCCCcccccCccccCCChhHHHHHHhcCcceEEEEEEEEc--CCCccccC--CCCCc
Q 037299 298 FKQNRVRMIVDCHATPLCVIQDEGLMQPLCLVGSTLRAPHGCHAQYMANMGSIASLALAVIIN--GNDEEAVG--GRSTT 373 (1111)
Q Consensus 298 y~~n~~r~i~d~~~~~~~~~~~~~~~~~ldls~~~lRsvsp~h~~yl~nmgv~asl~~~i~~~--~~~~~~~~--~~~~~ 373 (1111)
+..++.-.|+|+...| .++..++..+++++.|++||+.+ |+.||... ....+
T Consensus 87 ~~~~~~~~i~d~~~~~------------------------~~~~~~~~~~~~~s~l~vPl~~~~~~~~~Gvl~l~~~~~~ 142 (368)
T 1mc0_A 87 VEDKQCIQLKDLTSDD------------------------VQQLQNMLGCELQAMLCVPVISRATDQVVALACAFNKLGG 142 (368)
T ss_dssp HHHCCCEEGGGSCHHH------------------------HHHHHHHHCSCCCCEEEEEEECTTTCSEEEEEEEEEESSC
T ss_pred HhcCCeEEeccccccc------------------------ccccccccCcccceEEEEEeecCCCCcEEEEEEeecCCCC
Confidence 7777777788864332 14556677889999999999998 99999662 33444
Q ss_pred cch
Q 037299 374 RLW 376 (1111)
Q Consensus 374 ~LW 376 (1111)
+-|
T Consensus 143 ~~f 145 (368)
T 1mc0_A 143 DFF 145 (368)
T ss_dssp SSC
T ss_pred CCC
Confidence 445
No 170
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=97.68 E-value=7.3e-05 Score=84.65 Aligned_cols=79 Identities=14% Similarity=0.162 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHhhcCCCCCceEEEEEEEccccCCCCceeEEEEEEEeeCCCCCChhhhhhccCCCCCCC---------
Q 037299 992 RIQQVLADFLLNMVRYSPSAEGWVEIHVRPTLKQSSEGQTIVHNEFRMVCPGEGLPPELVQDMFHSSRWMT--------- 1062 (1111)
Q Consensus 992 ~L~qVl~nLl~NAik~t~~~~g~I~I~v~~~~~~~~~~~~~~~v~i~V~DnG~GIp~e~~~~iFepf~~~~--------- 1062 (1111)
++.+++.||+.||+++.. ..|.|.+.. ++ ...|+|.|||+|||++.++.+|++|++++
T Consensus 25 ~~~~vv~eLv~NaiDA~a---~~I~I~i~~-~~---------~~~i~V~DnG~Gi~~~~l~~~~~~~~tsK~~~~~Dl~~ 91 (367)
T 3h4l_A 25 DLTTAVKELVDNSIDANA---NQIEIIFKD-YG---------LESIECSDNGDGIDPSNYEFLALKHYTSKIAKFQDVAK 91 (367)
T ss_dssp SHHHHHHHHHHHHHHTTC---SEEEEEEET-TT---------TSEEEEEECSCCCCGGGTTTTTCCEEC---------CC
T ss_pred CHHHHHHHHHHHHHHCCC---CEEEEEEEe-CC---------EEEEEEEECCCCcChhHhccceeccccCcCCchhhhhh
Confidence 467999999999999863 578777642 12 34689999999999999999999973221
Q ss_pred ----C-ccchHHHHHHHHHHcCCEEEEEecC
Q 037299 1063 ----Q-EGLGLSMCRKILKLMNGEVQYIRES 1088 (1111)
Q Consensus 1063 ----G-~GLGL~i~r~iVe~~gG~I~v~s~~ 1088 (1111)
| .|.||+-+-.+ . ++.+.+..
T Consensus 92 i~t~GfrGeaL~Si~av----S-~l~V~sr~ 117 (367)
T 3h4l_A 92 VQTLGFRGEALSSLCGI----A-KLSVITTT 117 (367)
T ss_dssp CCEEEETTHHHHHHHHS----S-EEEEEEES
T ss_pred hhccCccchHHHHhhcc----C-EEEEEEEE
Confidence 2 26777766333 2 56665543
No 171
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls}
Probab=97.65 E-value=0.00052 Score=68.95 Aligned_cols=128 Identities=15% Similarity=0.067 Sum_probs=81.0
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhCCCeEEEEeecCCCCcEEEE-EecCCCC-CCccCCCCCCCCchHHH
Q 037299 217 QKLAVRAISQLQSLPGGDIKLLCDTVVESVRQLTGYDRVMVYRFHEDEHGEVVA-ESKRPDL-EPYFGLHYPATDIPQAS 294 (1111)
Q Consensus 217 ~~~~~~~i~~l~~~~~~~~~~l~~~~~~~vr~~~g~DRVmiY~F~~d~~G~Vva-E~~~~~~-~~~lg~~~pa~dip~~a 294 (1111)
.+++.+.-..|.+ +.|++++++.+++.+++++|+||+.||-+++++..-.+. +...... ....+..+|..+= -+
T Consensus 5 l~ll~~i~~~l~~--~~d~~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 80 (177)
T 3k2n_A 5 LKLMQYIGDAIGT--IRDPQELFRTVTDKLRLLFAFDSAVIITIDRERREASVFFEMLRFELPEQLRHQTRSIAGT--WL 80 (177)
T ss_dssp HHHHHHHHHHHTT--CCSHHHHHHHHHHHHTTTCCCSEEEEEEEETTTTEEEEEEEECSSCCCSTTCCSEEECTTS--GG
T ss_pred HHHHHHHHHHHhc--ccCHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCeEEeEEecccCCCCchhhcccCCcccc--HH
Confidence 3455566666776 679999999999999999999999999999987665543 2111111 2222333332221 12
Q ss_pred HHHHHhCCeeEeeccCCC-cceeecCCCCCCcccccCccccCCChhHHHHHHhcCcceEEEEEEEEcCCCcccc
Q 037299 295 RFLFKQNRVRMIVDCHAT-PLCVIQDEGLMQPLCLVGSTLRAPHGCHAQYMANMGSIASLALAVIINGNDEEAV 367 (1111)
Q Consensus 295 r~ly~~n~~r~i~d~~~~-~~~~~~~~~~~~~ldls~~~lRsvsp~h~~yl~nmgv~asl~~~i~~~~~~~~~~ 367 (1111)
...+..+...++ |+... |.. ...+++..+.+...|+++.|++||+.+|+.+|..
T Consensus 81 ~~v~~~~~~~~~-d~~~~~~~~------------------~~~~~~~~~~~~~~~~~s~l~vPL~~~~~~iGvL 135 (177)
T 3k2n_A 81 EGHLDDRTVTVA-SIARDIPSF------------------GADGAPLLWTLHELGMRQIVLSPLRSGGRVIGFL 135 (177)
T ss_dssp GGGTTCCSCEEE-ETTTTCTTT------------------TTTTCHHHHHHHHHTCCEEEEEEEEETTEEEEEE
T ss_pred HHHhccCCceEe-chhhccccc------------------CCcchhHHHHHHHcCceEEEEEEEEECCEEEEEE
Confidence 333444555444 65431 111 0001244467889999999999999998888865
No 172
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca}
Probab=97.60 E-value=0.00031 Score=71.09 Aligned_cols=111 Identities=13% Similarity=0.053 Sum_probs=78.6
Q ss_pred CCCHHHHHHHHHHHHHHhhCCCeEEEEeecCCCCcEEEEEecCCCCCCccCCCCCCCCchHHHHHHHHhCCeeEeeccCC
Q 037299 232 GGDIKLLCDTVVESVRQLTGYDRVMVYRFHEDEHGEVVAESKRPDLEPYFGLHYPATDIPQASRFLFKQNRVRMIVDCHA 311 (1111)
Q Consensus 232 ~~~~~~l~~~~~~~vr~~~g~DRVmiY~F~~d~~G~VvaE~~~~~~~~~lg~~~pa~dip~~ar~ly~~n~~r~i~d~~~ 311 (1111)
+.+++++++.+++.+++++|+|++.||-+++++.-.++|-.-.+.-..--....|..+ .....-+..+...+++|+..
T Consensus 15 ~~~~~~~l~~i~~~~~~~~~~~~~~i~l~~~~~~l~~~a~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~d~~~ 92 (181)
T 2qyb_A 15 TLDLQIIMDDLLNLLLKEFKLDLAVIRLVDEKGVLRVRSYSGKGIAGIAGKDWEPEIE--TYIGEAFLSNRLQFVNDTQY 92 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCSEEEEEEECTTSCEEEEEEEESCTTSTTCSCBCCCTT--SHHHHHHHHTSCEEESCGGG
T ss_pred ccCHHHHHHHHHHHHHHHhCCcEEEEEEECCCCCEEEEEEeCCCcceecccccccCCC--CchhhhhhcCCCEEecChhc
Confidence 4589999999999999999999999999966555555554433221101112334222 24555677788888888753
Q ss_pred CcceeecCCCCCCcccccCccccCCChhHHHHHHhcCcceEEEEEEEEcCC-Ccccc
Q 037299 312 TPLCVIQDEGLMQPLCLVGSTLRAPHGCHAQYMANMGSIASLALAVIINGN-DEEAV 367 (1111)
Q Consensus 312 ~~~~~~~~~~~~~~ldls~~~lRsvsp~h~~yl~nmgv~asl~~~i~~~~~-~~~~~ 367 (1111)
.| .+.+.+++...|+++.+++||..+|+ .+|..
T Consensus 93 ~~-----------------------~~~~~~~~~~~g~~s~~~vPl~~~~~~~~GvL 126 (181)
T 2qyb_A 93 MT-----------------------KPLTRELMQKEGIKSFAHIPISRKGEPPFGIL 126 (181)
T ss_dssp CS-----------------------CHHHHHHHHHTTCCEEEEEEECCTTSCCCEEE
T ss_pred CC-----------------------chhhHHHHHhcCcceEEEEEEEeCCCeEEEEE
Confidence 32 15677888999999999999999998 88865
No 173
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP}
Probab=97.59 E-value=0.00053 Score=67.71 Aligned_cols=124 Identities=10% Similarity=0.053 Sum_probs=80.0
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhCCCeEEEEeecCCCCcEEEEEecCCCCCCccCCCCCCCCchHHHHH
Q 037299 217 QKLAVRAISQLQSLPGGDIKLLCDTVVESVRQLTGYDRVMVYRFHEDEHGEVVAESKRPDLEPYFGLHYPATDIPQASRF 296 (1111)
Q Consensus 217 ~~~~~~~i~~l~~~~~~~~~~l~~~~~~~vr~~~g~DRVmiY~F~~d~~G~VvaE~~~~~~~~~lg~~~pa~dip~~ar~ 296 (1111)
+..+.+....+.+ +.+++++++.+++.+++++|+|++.||-++++...-++.-+....-+.+-+..+|..+ .-...
T Consensus 9 l~~l~~~~~~l~~--~~~~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~--~~~~~ 84 (171)
T 3ci6_A 9 LDTLRRIVQEINS--SVSLHDSLDIMVNQVADAMKVDVCSIYLLDERNQRYLLMASKGLNPESVGHVSLQLSE--GLVGL 84 (171)
T ss_dssp HHHHHHHHHHHHT--CSSHHHHHHHHHHHHHHHHTCSEEEEEEEETTTTEEEEEEEESSCGGGTTTCEEETTS--HHHHH
T ss_pred HHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHhCCCeEEEEEEeCCCCEEEEEeccCCCcccccceeeeccC--Ceehh
Confidence 3445566666776 5699999999999999999999999999998854444433333222233344555432 24455
Q ss_pred HHHhCCeeEeeccCCCcceeecCCCCCCcccccCccccCCChhHHHHHHhcCcceEEEEEEEEcCCCcccc
Q 037299 297 LFKQNRVRMIVDCHATPLCVIQDEGLMQPLCLVGSTLRAPHGCHAQYMANMGSIASLALAVIINGNDEEAV 367 (1111)
Q Consensus 297 ly~~n~~r~i~d~~~~~~~~~~~~~~~~~ldls~~~lRsvsp~h~~yl~nmgv~asl~~~i~~~~~~~~~~ 367 (1111)
.+..+...++.|+...|-. .+.......|+++.+++||+.+|+.+|..
T Consensus 85 ~~~~~~~~~~~d~~~~~~~-----------------------~~~~~~~~~~~~s~l~vPl~~~~~~~Gvl 132 (171)
T 3ci6_A 85 VGQREEIVNLENASKHERF-----------------------AYLPETGEEIYNSFLGVPVMYRRKVMGVL 132 (171)
T ss_dssp HHHHTSCEEESSGGGSTTC--------------------------------CCCEEEEEEEEETTEEEEEE
T ss_pred hhccCceEEecCCCcCcch-----------------------hccccccccccceEEEEeEEECCEEEEEE
Confidence 6677777778877543311 11111366789999999999998777754
No 174
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii}
Probab=97.49 E-value=0.00061 Score=67.75 Aligned_cols=126 Identities=9% Similarity=0.043 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhCCCeEEEEeecCCCCcEEEEEecCCCCCCccCCCCCCCCchHHH
Q 037299 215 QSQKLAVRAISQLQSLPGGDIKLLCDTVVESVRQLTGYDRVMVYRFHEDEHGEVVAESKRPDLEPYFGLHYPATDIPQAS 294 (1111)
Q Consensus 215 ~~~~~~~~~i~~l~~~~~~~~~~l~~~~~~~vr~~~g~DRVmiY~F~~d~~G~VvaE~~~~~~~~~lg~~~pa~dip~~a 294 (1111)
+..+.+.+....+.+ +.+++++++.+++.+.+++|+|++.||-+++++..-++.-+....-+..-...+|..+ .-.
T Consensus 5 ~~L~~L~~i~~~l~~--~~~~~~~l~~~~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~g~~~~~~~~~~~~~~~--~~~ 80 (171)
T 3trc_A 5 NMLKILRQITQEVNA--APNLEQALKLVVVRLCEALPADACSLFICDDVHGEYVLMATQGLNSKQVGKLRLKFGE--GLI 80 (171)
T ss_dssp HHHHHHHHHHHHHHH--CSSHHHHHHHHHHHHHHHTTCSEEEEEEEETTTTEEEEEEEESSCGGGTTTCEEETTC--HHH
T ss_pred HHHHHHHHHHHHHhc--ccCHHHHHHHHHHHHHHHhCCcEEEEEEEECCCCeEEEEEecCCCccccccEeecCCC--Chh
Confidence 445555666677777 6699999999999999999999999999999874333332222222222233555443 334
Q ss_pred HHHHHhCCeeEeeccCCCcceeecCCCCCCcccccCccccCCChhHHHHHHhcCcceEEEEEEEEcCCCcccc
Q 037299 295 RFLFKQNRVRMIVDCHATPLCVIQDEGLMQPLCLVGSTLRAPHGCHAQYMANMGSIASLALAVIINGNDEEAV 367 (1111)
Q Consensus 295 r~ly~~n~~r~i~d~~~~~~~~~~~~~~~~~ldls~~~lRsvsp~h~~yl~nmgv~asl~~~i~~~~~~~~~~ 367 (1111)
...+..+..-+|+|+...|-.. .. | .+...|+++.+++||+.+|+..|..
T Consensus 81 ~~~~~~~~~~~~~d~~~~~~~~------~~-------------~----~~~~~~~~s~l~vPl~~~~~~~Gvl 130 (171)
T 3trc_A 81 GLVGEREEPINLADAPLHPAYK------HR-------------P----ELGEEDYHGFLGIPIIEQGELLGIL 130 (171)
T ss_dssp HHHHHHTSCEEESCGGGSTTCC------CC-------------G----GGCCCCCCEEEEEEEEETTEEEEEE
T ss_pred hHHHhcCCeEEeCCCCCCCccc------cc-------------c----cCCcccccEEEEEeEEECCEEEEEE
Confidence 5566777777788875433210 00 1 0234788999999999998777754
No 175
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens}
Probab=97.46 E-value=0.00074 Score=67.72 Aligned_cols=118 Identities=10% Similarity=-0.035 Sum_probs=76.9
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHhhCCCeEEEEeecCCCCcEEEEEecCCCCCCccCCCCCCCCchHHHHHHHHh
Q 037299 221 VRAISQLQSLPGGDIKLLCDTVVESVRQLTGYDRVMVYRFHEDEHGEVVAESKRPDLEPYFGLHYPATDIPQASRFLFKQ 300 (1111)
Q Consensus 221 ~~~i~~l~~~~~~~~~~l~~~~~~~vr~~~g~DRVmiY~F~~d~~G~VvaE~~~~~~~~~lg~~~pa~dip~~ar~ly~~ 300 (1111)
.+....|.+ +.+++++++.+++.+.+++|+|++.||-+++++. .+.+ ....+-+..-+..+|-.+= -....+..
T Consensus 18 ~~i~~~l~~--~~~~~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~-~~~~-~~g~~~~~~~~~~~~~~~~--~~~~~~~~ 91 (181)
T 3e0y_A 18 EEISMLVSS--DFDLPEVLQHVTAKVATQLKVSVCNIYLREGDEV-VLAA-THGFDPAFIGKIRIKIGDG--ITGSVARD 91 (181)
T ss_dssp HHHHHHHST--TSCHHHHHHHHHHHHHHHTTCSCEEEEEEETTEE-EEEE-EESSCGGGTTTCEEETTTS--SHHHHHHH
T ss_pred HHHHHHHhh--cCCHHHHHHHHHHHHHHHhCCCeEEEEEEcCCCc-eEEE-ecCCCHHHhccccccCCCC--eeeehhhc
Confidence 344556666 5699999999999999999999999999999876 4443 3332222223334443322 23455667
Q ss_pred CCeeEeeccCCCcceeecCCCCCCcccccCccccCCChhHHHHHHhcCcceEEEEEEEEcCCCcccc
Q 037299 301 NRVRMIVDCHATPLCVIQDEGLMQPLCLVGSTLRAPHGCHAQYMANMGSIASLALAVIINGNDEEAV 367 (1111)
Q Consensus 301 n~~r~i~d~~~~~~~~~~~~~~~~~ldls~~~lRsvsp~h~~yl~nmgv~asl~~~i~~~~~~~~~~ 367 (1111)
+...+|+|+...|-. .+...+...|+++.+++||+.+|+.+|..
T Consensus 92 ~~~~~i~d~~~~~~~-----------------------~~~~~~~~~~~~s~l~vPl~~~~~~iGvl 135 (181)
T 3e0y_A 92 GQYISLSRASQDPRY-----------------------RYFPELQEEKYNSMLSFPIGDKKEVYGVI 135 (181)
T ss_dssp CCCEEEEEECCCCCC--------------------------------CEEEEEEEEEECSSCEEEEE
T ss_pred CCeEEecCcccCccc-----------------------cccccccccCcceEEEEEEEeCCeEEEEE
Confidence 777788887654321 01112446789999999999998888865
No 176
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=97.35 E-value=0.00098 Score=75.89 Aligned_cols=114 Identities=15% Similarity=0.209 Sum_probs=80.7
Q ss_pred HHhhcCCC-CCHHHHHHHHHHHHHHhhCCCeEEEEeecCCCCcEEEEEecCCCC--CCccCCCCCCCCchHHHHHHHHhC
Q 037299 225 SQLQSLPG-GDIKLLCDTVVESVRQLTGYDRVMVYRFHEDEHGEVVAESKRPDL--EPYFGLHYPATDIPQASRFLFKQN 301 (1111)
Q Consensus 225 ~~l~~~~~-~~~~~l~~~~~~~vr~~~g~DRVmiY~F~~d~~G~VvaE~~~~~~--~~~lg~~~pa~dip~~ar~ly~~n 301 (1111)
..|.+ + .+++++++.+++.+++++|+||+.||.+++ |+.+..+...++ +...+..+|... .-+...+..+
T Consensus 188 ~~l~~--~~~~~~~~l~~i~~~~~~~~~~~~~~i~l~d~---~~l~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~ 260 (368)
T 1mc0_A 188 KNLFT--HLDDVSVLLQEIITEARNLSNAEICSVFLLDQ---NELVAKVFDGGVVDDESYEIRIPADQ--GIAGHVATTG 260 (368)
T ss_dssp HHHHH--TTTCHHHHHHHHHHHHHHHHTEEEEEEEEECS---SSEEEEEETTEECCCSTTCCEECTTS--HHHHHHHHHC
T ss_pred HHHHh--cccCHHHHHHHHHHHHHHHhcccEEEEEEEeC---CceEEEEeccccccccccceeecCCC--ceeeeehhhC
Confidence 34444 3 489999999999999999999999999988 566666554322 345566777542 3456677888
Q ss_pred CeeEeeccCCCcceeecCCCCCCcccccCccccCCChhHHHHHHhcCcceEEEEEEEEc-CCCcccc
Q 037299 302 RVRMIVDCHATPLCVIQDEGLMQPLCLVGSTLRAPHGCHAQYMANMGSIASLALAVIIN-GNDEEAV 367 (1111)
Q Consensus 302 ~~r~i~d~~~~~~~~~~~~~~~~~ldls~~~lRsvsp~h~~yl~nmgv~asl~~~i~~~-~~~~~~~ 367 (1111)
...+|+|+...|.- ..+......+.+++-|++||+.. |+.+|..
T Consensus 261 ~~~~i~d~~~~~~~----------------------~~~~~~~~~~~~~s~l~vPl~~~~~~~iGvl 305 (368)
T 1mc0_A 261 QILNIPDAYAHPLF----------------------YRGVDDSTGFRTRNILCFPIKNENQEVIGVA 305 (368)
T ss_dssp CCEEESCSTTCTTC----------------------CCTTHHHHTCCCCCEEEEEEECTTSCEEEEE
T ss_pred CEEEecCcccCccc----------------------chhhhhccCCccceEEEEeeECCCCcEEEEE
Confidence 88889988654421 11222233455699999999994 8999865
No 177
>3hcy_A Putative two-component sensor histidine kinase PR; two-component sensor histidine kinase protein, structural GE PSI, MCSG; 2.80A {Sinorhizobium meliloti}
Probab=97.19 E-value=0.00062 Score=66.57 Aligned_cols=107 Identities=12% Similarity=0.099 Sum_probs=65.3
Q ss_pred CCCHHHHHHHHHHHHHHhhCCCeEEEEeecCCCCcEEEEEecCCCCC-CccCCCCCCCCchHHHHHHHHhCCeeEeeccC
Q 037299 232 GGDIKLLCDTVVESVRQLTGYDRVMVYRFHEDEHGEVVAESKRPDLE-PYFGLHYPATDIPQASRFLFKQNRVRMIVDCH 310 (1111)
Q Consensus 232 ~~~~~~l~~~~~~~vr~~~g~DRVmiY~F~~d~~G~VvaE~~~~~~~-~~lg~~~pa~dip~~ar~ly~~n~~r~i~d~~ 310 (1111)
|.|++++++.+++.+.+++|+|++.||-+++++.-.+++-. +++ .|... ..... | ...-+..+..-+|+|+.
T Consensus 1 S~~l~~~l~~~~~~~~~~~~~~~~~i~l~d~~~~l~~~a~~---g~~~~~~~~-~~~~~-~--~~~~~~~~~~~~i~d~~ 73 (151)
T 3hcy_A 1 SNAIEEVYEATLDAIQGALNCDRASILLFDEAGTMRFVAAR---GLSEHYQRA-VDGHS-P--WITGANEPEPIFVENVD 73 (151)
T ss_dssp CCCCHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEE---SCCHHHHHH-TCBCC-S--CC---CCCCCEEESCGG
T ss_pred CccHHHHHHHHHHHHHHhhcCCEEEEEEEcCCCcEEEEeeC---CCCHHHHhh-ccCCC-c--hhhhhhcCCcEEEeChh
Confidence 35899999999999999999999999999998733333321 111 11100 00000 0 11112223333334432
Q ss_pred CCcceeecCCCCCCcccccCccccCCChhHHHHHHhcCcceEEEEEEEEcCCCcccc
Q 037299 311 ATPLCVIQDEGLMQPLCLVGSTLRAPHGCHAQYMANMGSIASLALAVIINGNDEEAV 367 (1111)
Q Consensus 311 ~~~~~~~~~~~~~~~ldls~~~lRsvsp~h~~yl~nmgv~asl~~~i~~~~~~~~~~ 367 (1111)
..| -.+.+.+.+...|+++.+++||+.+|+..|..
T Consensus 74 ~~~----------------------~~~~~~~~~~~~g~~s~~~vPl~~~~~~iGvl 108 (151)
T 3hcy_A 74 DAE----------------------FSRELKESIVGEGIAALGFFPLVTEGRLIGKF 108 (151)
T ss_dssp GSC----------------------CCHHHHHHHHHHTCCEEEEEEEESSSSEEEEE
T ss_pred hCc----------------------ccchhHHHHHhcCchheEEeceEECCEEEEEE
Confidence 222 11566778899999999999999998888754
No 178
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=97.10 E-value=0.00016 Score=76.33 Aligned_cols=54 Identities=13% Similarity=0.147 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhhcCCC-------------CCceEEEEEEEccccCCCCceeEEEEEEEeeCCCCCChhhhhhccCC
Q 037299 995 QVLADFLLNMVRYSPS-------------AEGWVEIHVRPTLKQSSEGQTIVHNEFRMVCPGEGLPPELVQDMFHS 1057 (1111)
Q Consensus 995 qVl~nLl~NAik~t~~-------------~~g~I~I~v~~~~~~~~~~~~~~~v~i~V~DnG~GIp~e~~~~iFep 1057 (1111)
.+|.||+.||+++... .++.+.|.+....+ ...|+|.|||+||+++.+...|..
T Consensus 29 ~~lrELI~NA~DA~a~~~~~~~~~~~~~~~~~~i~I~i~~~~~---------~~~i~I~DnG~GMs~edl~~~l~~ 95 (220)
T 2wer_A 29 IFLREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPE---------QKVLEIRDSGIGMTKAELINNLGT 95 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEEEGG---------GTEEEEEECSCCCCHHHHHHHTTT
T ss_pred HHHHHHHHhHHHHHHHHHhhcccCchhccCCCcEEEEEEECCC---------CCEEEEEEcCCCCCHHHHHHHHHh
Confidence 6899999999998541 12444555444322 225889999999999998776654
No 179
>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans}
Probab=97.03 E-value=0.003 Score=63.38 Aligned_cols=107 Identities=11% Similarity=0.124 Sum_probs=72.2
Q ss_pred CCHHHHHHHHHHHHHHhhCCCeEEEEeecCCCCcEEEEEecCCCCCCc--cCCCCCCCCchHHHHHHHHhCCeeEeeccC
Q 037299 233 GDIKLLCDTVVESVRQLTGYDRVMVYRFHEDEHGEVVAESKRPDLEPY--FGLHYPATDIPQASRFLFKQNRVRMIVDCH 310 (1111)
Q Consensus 233 ~~~~~l~~~~~~~vr~~~g~DRVmiY~F~~d~~G~VvaE~~~~~~~~~--lg~~~pa~dip~~ar~ly~~n~~r~i~d~~ 310 (1111)
.+++++++.++++++++++||++-+|-+++ |+.+.++..+.-... .|..+|..+=+ ...-+..++.-+ .|+.
T Consensus 4 ~sldevL~~v~~~l~~~~~~d~~~l~L~~~---~~L~l~a~~~~~~~~~~~~~~ip~~~s~--~~~v~~~~~~~v-~~~~ 77 (165)
T 3o5y_A 4 MSLDDIINNMIDKLKLLVHFDRISFLLLAN---ETLKLSHVYPKGSHSLDIGSTIPKEQSL--YWSALDQRQTIF-RSLT 77 (165)
T ss_dssp CCHHHHHHHHHHHHHHHSCCSEEEEEEEET---TEEEEEEEESTTCCSSCTTCEECSTTCH--HHHHHHHTSCEE-EESC
T ss_pred CCHHHHHHHHHHHHHHhcCcceEEEEEEEC---CEEEEEEEecCCccccccccccCCccCH--HHHHHHhCCeEE-EcCc
Confidence 489999999999999999999999999975 344444443332333 46667764322 223344444433 4433
Q ss_pred CCcceeecCCCCCCcccccCccccCCChhHHHHHHhcCcceEEEEEEEEcCCCcccc
Q 037299 311 ATPLCVIQDEGLMQPLCLVGSTLRAPHGCHAQYMANMGSIASLALAVIINGNDEEAV 367 (1111)
Q Consensus 311 ~~~~~~~~~~~~~~~ldls~~~lRsvsp~h~~yl~nmgv~asl~~~i~~~~~~~~~~ 367 (1111)
..+-+ .++-.|+...|+++-|++||+.+|+.+|..
T Consensus 78 ~~~~~----------------------~~~~~~~~~~~~~S~l~vPL~~~~~~iGvl 112 (165)
T 3o5y_A 78 DTQDN----------------------FYEKQYLAILDLKSILVIPIYSKNKRVGVL 112 (165)
T ss_dssp CTTCC----------------------CTTHHHHHTTTCCEEEEEEEECSSCEEEEE
T ss_pred ccccc----------------------cccchHHHhhCCCEEEEeCeeECCEEEEEE
Confidence 22211 233478999999999999999998888755
No 180
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=96.92 E-value=0.00016 Score=78.27 Aligned_cols=53 Identities=11% Similarity=0.156 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhhcCC-------------CCCceEEEEEEEccccCCCCceeEEEEEEEeeCCCCCChhhhhhccC
Q 037299 995 QVLADFLLNMVRYSP-------------SAEGWVEIHVRPTLKQSSEGQTIVHNEFRMVCPGEGLPPELVQDMFH 1056 (1111)
Q Consensus 995 qVl~nLl~NAik~t~-------------~~~g~I~I~v~~~~~~~~~~~~~~~v~i~V~DnG~GIp~e~~~~iFe 1056 (1111)
.+|.+|+.||+++.. ..++.+.|.+....+ .-.|+|.|||+||+.+.+...|.
T Consensus 31 ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~---------~~~l~I~DnGiGMt~edl~~~l~ 96 (269)
T 1qy5_A 31 IFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKE---------KNLLHVTDTGVGMTREELVKNLG 96 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETT---------TTEEEEEECSCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhccCchhccCCCceEEEEEEcCC---------ceEEEEEECCCCCCHHHHHHHhh
Confidence 488999999999853 112344454444322 22578899999999998765553
No 181
>2vjw_A GAF-B, GAF family protein; histidine kinase, hypoxia sensing, hydrolase; HET: MSE; 2.0A {Mycobacterium smegmatis} PDB: 2vks_A
Probab=96.81 E-value=0.0054 Score=60.28 Aligned_cols=98 Identities=16% Similarity=0.069 Sum_probs=69.2
Q ss_pred CHHHHHHHHHHHHHHhhCCCeEEEEeecCCCC---cEEEEEec-CCCCCCccCCCCCCCCchHHHHHHHHhCCeeEeecc
Q 037299 234 DIKLLCDTVVESVRQLTGYDRVMVYRFHEDEH---GEVVAESK-RPDLEPYFGLHYPATDIPQASRFLFKQNRVRMIVDC 309 (1111)
Q Consensus 234 ~~~~l~~~~~~~vr~~~g~DRVmiY~F~~d~~---G~VvaE~~-~~~~~~~lg~~~pa~dip~~ar~ly~~n~~r~i~d~ 309 (1111)
+++++++.+++.+++++|+|+..||-.+++.. |+...++. ....+.+.|..||-.. + -...-+..++.-+|+|+
T Consensus 1 ~~~~~L~~i~~~a~~~~~ad~~~i~l~~~~~~~~~~~l~~~a~~g~~~~~~~~~~~~~~~-g-~~g~v~~~g~~v~v~d~ 78 (149)
T 2vjw_A 1 DPATVFRLVAAEALTLTGADGTLVAVPADPDASAAEELVIVEVAGAVPAEVEASAIPVQD-N-AIGQAFRDRAPRRLDVL 78 (149)
T ss_dssp CTHHHHHHHHHHHHHHHCCSEEEEEEECC----CCSEEEEEEEEETSCGGGTTCEEESSS-S-HHHHHHHHCCCEEESCC
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEEEcCCCCCcCceEEEEEEecCChHhhcCcccCCCC-C-HHHHHhhcCceEEecCc
Confidence 45789999999999999999999999987641 44444333 3344667888888543 2 33345666677778887
Q ss_pred CCCcceeecCCCCCCcccccCccccCCChhHHHHHHhcCcceEEEEEEEEcCCCcccc
Q 037299 310 HATPLCVIQDEGLMQPLCLVGSTLRAPHGCHAQYMANMGSIASLALAVIINGNDEEAV 367 (1111)
Q Consensus 310 ~~~~~~~~~~~~~~~~ldls~~~lRsvsp~h~~yl~nmgv~asl~~~i~~~~~~~~~~ 367 (1111)
...| |+++-|++||..+|+.-|..
T Consensus 79 ~~d~----------------------------------~~~s~l~vPL~~~~~~~GvL 102 (149)
T 2vjw_A 79 DGPG----------------------------------LGGPALVLPLRATDTVAGVL 102 (149)
T ss_dssp CTTS----------------------------------CEEEEEEEEEEETTEEEEEE
T ss_pred ccCC----------------------------------CCCeEEEEEEccCCeEEEEE
Confidence 5322 68999999999987776654
No 182
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=96.80 E-value=0.0054 Score=76.31 Aligned_cols=130 Identities=14% Similarity=0.213 Sum_probs=88.6
Q ss_pred CCHHHHHHHHHHHHHHhhCCCeEEEEeecCCCCcEEEEEecCCCC--CCccCCCCCCCCchHHHHHHHHhCCeeEeeccC
Q 037299 233 GDIKLLCDTVVESVRQLTGYDRVMVYRFHEDEHGEVVAESKRPDL--EPYFGLHYPATDIPQASRFLFKQNRVRMIVDCH 310 (1111)
Q Consensus 233 ~~~~~l~~~~~~~vr~~~g~DRVmiY~F~~d~~G~VvaE~~~~~~--~~~lg~~~pa~dip~~ar~ly~~n~~r~i~d~~ 310 (1111)
.+++++++.+++++++++|+||+.||-+++ |+.+..+..... +...+..+|... .-+...+..+..-.|+|+.
T Consensus 195 ~dl~~ll~~i~~~~~~~l~ad~~~i~L~d~---~~l~~~~~~g~~~~~~~~~~~~~~~~--gi~g~v~~~g~~v~i~d~~ 269 (691)
T 3ibj_A 195 DDVSVLLQEIITEARNLSNAEICSVFLLDQ---NELVAKVFDGGVVDDESYEIRIPADQ--GIAGHVATTGQILNIPDAY 269 (691)
T ss_dssp SCTTTHHHHHHHHHHHHHTEEEEEEEEECS---SEEEEECCSSSCCSSCCCEEEEETTS--HHHHHHHHHCSCEEESCST
T ss_pred ccHHHHHHHHHHHHHHHhCCCeEEEEEEeC---CeEEEEeecCCcccccccceeccCCC--CHHHHHHHhCCEEEecCcc
Confidence 489999999999999999999999999988 788887766543 334455666543 3455677888888888886
Q ss_pred CCcceeecCCCCCCcccccCccccCCChhHHHHHHhcCcceEEEEEEEEc-CCCcccc--CCCCCccch---------Hh
Q 037299 311 ATPLCVIQDEGLMQPLCLVGSTLRAPHGCHAQYMANMGSIASLALAVIIN-GNDEEAV--GGRSTTRLW---------AF 378 (1111)
Q Consensus 311 ~~~~~~~~~~~~~~~ldls~~~lRsvsp~h~~yl~nmgv~asl~~~i~~~-~~~~~~~--~~~~~~~LW---------~~ 378 (1111)
..|-- ++...-...+++++-|++||+.+ |+.+|.. .....++-| .|
T Consensus 270 ~d~~~----------------------~~~~~~~~g~~~rS~L~vPL~~~~g~viGVL~l~~~~~~~~f~~~d~~ll~~l 327 (691)
T 3ibj_A 270 AHPLF----------------------YRGVDDSTGFRTRNILCFPIKNENQEVIGVAELVNKINGPWFSKFDEDLATAF 327 (691)
T ss_dssp TSTTC----------------------------CCSCCCCCEEEEECCCSSSCCCEEEEEEEESSSSSCCTTTTHHHHHH
T ss_pred cCccc----------------------cchhhcccCCeeeeEEEEeEECCCCCEEEEEEEEECCCCCCCCHHHHHHHHHH
Confidence 65421 11222233466899999999998 7999965 222334445 45
Q ss_pred hHhhcHHHHHH
Q 037299 379 GLQLNMELQLA 389 (1111)
Q Consensus 379 ~~~~~~~~~~~ 389 (1111)
+-+++..++.+
T Consensus 328 A~~~aiAIena 338 (691)
T 3ibj_A 328 SIYCGISIAHS 338 (691)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555444433
No 183
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=96.77 E-value=0.0026 Score=72.69 Aligned_cols=70 Identities=14% Similarity=0.273 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhhcCCCC-CceEEEEEEEccccCCCCceeEEEEEEEeeCCCCCChhh--------hhhccCCC------
Q 037299 994 QQVLADFLLNMVRYSPSA-EGWVEIHVRPTLKQSSEGQTIVHNEFRMVCPGEGLPPEL--------VQDMFHSS------ 1058 (1111)
Q Consensus 994 ~qVl~nLl~NAik~t~~~-~g~I~I~v~~~~~~~~~~~~~~~v~i~V~DnG~GIp~e~--------~~~iFepf------ 1058 (1111)
.+++.+++.||++..-.+ ...|.|.+...+ .|+|.|||+|||.+. ++.+|..+
T Consensus 33 ~~lv~ElvdNsiD~a~~g~a~~I~V~i~~~g------------~I~V~DnG~GIp~~~~~~~~~~~~e~v~~~lhagsKf 100 (390)
T 1s16_A 33 NHLGQEVIDNSVDEALAGHAKRVDVILHADQ------------SLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKF 100 (390)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSEEEEEECTTS------------CEEEEECSSCCCCSBCTTTCSBHHHHHHHCTTEESCS
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEEecCC------------EEEEEECCCCcCcccccccCcchhhheeeeecccCCc
Confidence 456666666666652221 367888764321 489999999999988 56667653
Q ss_pred ----CC-CCC-ccchHHHHHHHH
Q 037299 1059 ----RW-MTQ-EGLGLSMCRKIL 1075 (1111)
Q Consensus 1059 ----~~-~~G-~GLGL~i~r~iV 1075 (1111)
++ +.| .|.||+.+-.+.
T Consensus 101 ~~~~~~~sgGl~GvGls~vnalS 123 (390)
T 1s16_A 101 SNKNYQFSGGLHGVGISVVNALS 123 (390)
T ss_dssp SSSSCSSCSCCSSCHHHHHHHTE
T ss_pred CCCcccccCCccccchHHHHHhh
Confidence 11 224 699999997665
No 184
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=96.59 E-value=0.0045 Score=70.73 Aligned_cols=73 Identities=10% Similarity=0.171 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHhhcCCCC-CceEEEEEEEccccCCCCceeEEEEEEEeeCCCCCChhhhh--------hccCC-----
Q 037299 992 RIQQVLADFLLNMVRYSPSA-EGWVEIHVRPTLKQSSEGQTIVHNEFRMVCPGEGLPPELVQ--------DMFHS----- 1057 (1111)
Q Consensus 992 ~L~qVl~nLl~NAik~t~~~-~g~I~I~v~~~~~~~~~~~~~~~v~i~V~DnG~GIp~e~~~--------~iFep----- 1057 (1111)
.+..++.+++.||++..-.+ ...|.|.+...+ .|+|.|||+|||.+..+ -+|..
T Consensus 34 gl~~lv~ElvdNsiDea~~g~a~~I~V~i~~~g------------~I~V~DnG~GIp~~~~~~~~~~~~elv~~~lhags 101 (391)
T 1ei1_A 34 GLHHMVFEVVDNAIDEALAGHCKEIIVTIHADN------------SVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGG 101 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCEEEEEECTTS------------CEEEEECSSCCCCSBCTTTSSBHHHHHHHSTTEES
T ss_pred CHHHHHHHHHHhHHHHHhcCCCCEEEEEEeCCC------------EEEEEECCCCcccCcccccCcchHHHhheeccccC
Confidence 67888899999999873221 357777764321 48999999999998843 35542
Q ss_pred -C----CC-CCC-ccchHHHHHHHHH
Q 037299 1058 -S----RW-MTQ-EGLGLSMCRKILK 1076 (1111)
Q Consensus 1058 -f----~~-~~G-~GLGL~i~r~iVe 1076 (1111)
| ++ +.| .|.||+.+-.+-+
T Consensus 102 Kf~~~~~~vSgGl~GvGls~vnalS~ 127 (391)
T 1ei1_A 102 KFDDNSYKVSGGLHGVGVSVVNALSQ 127 (391)
T ss_dssp CSSSSSCSSCSCCSSCHHHHHHHTEE
T ss_pred CcCCCcccccCCccccchHHHHHhcC
Confidence 1 12 223 5999999966653
No 185
>1oj5_A Steroid receptor coactivator 1A; transcriptional coactivator, complex, LXXLL motif, transcriptional regulation; 2.2A {Mus musculus} SCOP: d.110.3.8
Probab=96.51 E-value=0.0033 Score=59.46 Aligned_cols=96 Identities=7% Similarity=-0.000 Sum_probs=74.4
Q ss_pred CcEEEEcCCccEEeecHHHHHHcCCCh--hhhcCCcccccccchhhHH--HHHHHHHHHHcCCCccceEEEEEEeccccC
Q 037299 614 APIFAVDVHGCVNGWNAKVAELTGLSV--EEAMGKSLVHDLVYKEYEE--IVDNLLHHALKGEEDKNVEIKLRTFGAENR 689 (1111)
Q Consensus 614 ~~I~~~D~dG~I~~~N~a~~~l~G~~~--eeliG~~~~~~l~~~~~~~--~~~~~l~~~l~~~~~~~~e~~l~~~~~~~d 689 (1111)
.-+.-.|.+|+|+++.++.. ..++.+ +|++|+++. +++|++|.+ .+.+.++.++..+.....-++++ .++
T Consensus 8 ~F~sRh~~dGKf~~vDq~~~-r~~~~~g~qdLlGrsiy-~f~H~~D~~~s~l~~h~~~vl~~Gq~~S~~YRfr----~k~ 81 (132)
T 1oj5_A 8 SFMTKQDTTGKIISIDTSSL-RAAGRTGWEDLVRKCIY-AFFQPQGREPSYARQLFQEVMTRGTASSPSYRFI----LND 81 (132)
T ss_dssp EEEEEECTTCCEEEEECHHH-HTTCCSCHHHHHHHHHH-HHTSCBTTBCCHHHHHHHHHHHHSEEECCCEEEE----CTT
T ss_pred eeEEeecCCCcEEEEecccc-cccccccHHHHHHHHHH-HHhCcccchHHHHHHHHHHHHHcCCccccceEEE----ecC
Confidence 34556789999999999987 477777 999999999 999999976 88888888887666655566766 579
Q ss_pred CcEEEEEEEeEeeccCC-CCEEEEEEE
Q 037299 690 KKAVFVVVNACSSKDYT-NNIVGVCFV 715 (1111)
Q Consensus 690 G~~~~v~v~~~pi~d~~-G~v~gvv~v 715 (1111)
|+.+|+...+..+++.. +++..++++
T Consensus 82 g~~V~~qT~sk~f~np~t~e~e~Ivs~ 108 (132)
T 1oj5_A 82 GTMLSAHTRCKLCYPQSPDMQPFIMGI 108 (132)
T ss_dssp SCEEEEEEEEEEECC----CCCEEEEE
T ss_pred CcEEEEEEEEEEecCCCCCCCCEEEEE
Confidence 99999999998888752 344444444
No 186
>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A*
Probab=96.46 E-value=0.0025 Score=61.73 Aligned_cols=109 Identities=12% Similarity=0.007 Sum_probs=70.3
Q ss_pred CCCHHHHHHHHHHHHHHhhCCCeEEEEeecCCCCcEEEEEecCCCCCCccC-CCCCCCCchHHHHHHHHhCCeeEeeccC
Q 037299 232 GGDIKLLCDTVVESVRQLTGYDRVMVYRFHEDEHGEVVAESKRPDLEPYFG-LHYPATDIPQASRFLFKQNRVRMIVDCH 310 (1111)
Q Consensus 232 ~~~~~~l~~~~~~~vr~~~g~DRVmiY~F~~d~~G~VvaE~~~~~~~~~lg-~~~pa~dip~~ar~ly~~n~~r~i~d~~ 310 (1111)
+.+++++++.+++.+++++++|++.||-+++++.-.+++-.-.+ -+.+-. .++|..+ .-....+..++.-+|.|+.
T Consensus 4 ~~~~~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~l~~~~~~g~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~ 80 (153)
T 2w3g_A 4 DPDLEATLRAIVHSATSLVDARYGAMEVHDRQHRVLHFVYEGID-EETVRRIGHLPKGL--GVIGLLIEDPKPLRLDDVS 80 (153)
T ss_dssp CHHHHHHHHHHHHHHHHHTTEEEEEEEEECTTCCEEEEEEESCC-HHHHHHHCSCCCSC--THHHHHHHSCSCEEESSGG
T ss_pred ccCHHHHHHHHHHHHHHHhCCCEEEEEEECCCCCEEEEEEecCC-HHHHHhhccCCCCC--CHHHHHHhcCCcEEecCcc
Confidence 34789999999999999999999999999966444444432211 111111 2455432 2344566777777788765
Q ss_pred CCcceeecCCCCCCcccccCccccCCChhHHHHHHhcCcceEEEEEEEEcCCCcccc
Q 037299 311 ATPLCVIQDEGLMQPLCLVGSTLRAPHGCHAQYMANMGSIASLALAVIINGNDEEAV 367 (1111)
Q Consensus 311 ~~~~~~~~~~~~~~~ldls~~~lRsvsp~h~~yl~nmgv~asl~~~i~~~~~~~~~~ 367 (1111)
..|.-. .. +. ...|+++.|++||+.+|+.+|..
T Consensus 81 ~~~~~~------------------~~-~~-----~~~~~~s~l~vPl~~~~~~~Gvl 113 (153)
T 2w3g_A 81 AHPASI------------------GF-PP-----YHPPMRTFLGVPVRVRDESFGTL 113 (153)
T ss_dssp GSTTCC------------------CC-CT-----TCCCCCCEEEEEEEETTEEEEEE
T ss_pred cCchhc------------------CC-CC-----cCCCCCeEEEeeEEECCEEEEEE
Confidence 433210 00 10 34588999999999998887754
No 187
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=96.41 E-value=0.0066 Score=55.78 Aligned_cols=56 Identities=13% Similarity=0.196 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhc
Q 037299 872 KKCFARLKELAYICQEIKNPLSGVSFTNSLLEATDLTEDQKQLLETSAACEKQMLKIIKDV 932 (1111)
Q Consensus 872 ~~~~~r~~~La~isHEIrnPLt~I~~~~~LL~~~~l~e~~~~~l~~i~~~~~~l~~lI~dL 932 (1111)
+....+.++++.++||+||||+.|.++.+++.+. ...+.+.+.....+|..+++++
T Consensus 55 ~~~~~~~~~~~~~shel~tpl~~i~~~~e~l~~~-----~~~~~~~i~~~~~~l~~~i~~l 110 (114)
T 3zcc_A 55 QLADDGTLLMAGVSHDLRTPLTRIRLATEMMSEQ-----DGYLAESINKDIEECNAIIEQF 110 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCGG-----GHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHcChHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHH
Confidence 3445566789999999999999999999988542 3445688888999999999986
No 188
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=96.40 E-value=0.0037 Score=67.42 Aligned_cols=72 Identities=14% Similarity=0.190 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhhcCCC-------------CCceEEEEEEEccccCCCCceeEEEEEEEeeCCCCCChhhhhhccCCC-C-
Q 037299 995 QVLADFLLNMVRYSPS-------------AEGWVEIHVRPTLKQSSEGQTIVHNEFRMVCPGEGLPPELVQDMFHSS-R- 1059 (1111)
Q Consensus 995 qVl~nLl~NAik~t~~-------------~~g~I~I~v~~~~~~~~~~~~~~~v~i~V~DnG~GIp~e~~~~iFepf-~- 1059 (1111)
.+|.+|+.||+++... ..+.|.|.+..... .-.|+|.|||+||+++.+...|... +
T Consensus 71 ~~lrELI~NA~DA~ak~r~~~l~~~~~~~~~~~i~I~i~~d~~---------~~~I~I~DnG~GMs~edL~~~l~~ia~S 141 (264)
T 1yc1_A 71 IFLRELISNSSDALDKIRYETLTDPSKLDSGKELHINLIPNKQ---------DRTLTIVDTGIGMTKADLINNLGTIAKS 141 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGGGCCCCCEEEEEETT---------TTEEEEEECSCCCCHHHHHHHHHSCTTS
T ss_pred HHHHHHHHHHHHHhhhhhhhhccCccccCCCCeEEEEEEECCC---------eeEEEEEECCcCCCHHHHHHHHHhhccc
Confidence 5889999999988540 02445555543222 1258889999999999986655331 1
Q ss_pred ----------------CCCCccchHHHHHHHH
Q 037299 1060 ----------------WMTQEGLGLSMCRKIL 1075 (1111)
Q Consensus 1060 ----------------~~~G~GLGL~i~r~iV 1075 (1111)
..+..|+|++.+..++
T Consensus 142 ~~~~f~~~l~~~~d~~~iG~fGiGf~S~f~va 173 (264)
T 1yc1_A 142 GTKAFMEALQAGADISMIGQFGVGFYSAYLVA 173 (264)
T ss_dssp CHHHHHHHHHTTCCGGGGGGGTCGGGGHHHHE
T ss_pred cchhhhhhhccccchhhcCCCCCCccccccCC
Confidence 1113489998886654
No 189
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=96.38 E-value=0.006 Score=63.14 Aligned_cols=46 Identities=13% Similarity=0.297 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhhcCCCC-CceEEEEEEEccccCCCCceeEEEEEEEeeCCCCCChhhh
Q 037299 994 QQVLADFLLNMVRYSPSA-EGWVEIHVRPTLKQSSEGQTIVHNEFRMVCPGEGLPPELV 1051 (1111)
Q Consensus 994 ~qVl~nLl~NAik~t~~~-~g~I~I~v~~~~~~~~~~~~~~~v~i~V~DnG~GIp~e~~ 1051 (1111)
..++.+|+.||++..-.. ...|.|.+.. + + .|+|.|||.|||.+..
T Consensus 19 ~~~v~Elv~NsiDa~~~g~a~~I~V~i~~--~--g--------~i~V~DnG~GIp~~~~ 65 (201)
T 3fv5_A 19 NHLGQEVIDNSVDEALAGHAKRVDVILHA--D--Q--------SLEVIDDGRGMPVDIH 65 (201)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSEEEEEECT--T--S--------CEEEEECSSCCCCSBC
T ss_pred hhhhHHHHHHHHHHHhcCCCcEEEEEEeC--C--C--------EEEEEECCCCcCcccc
Confidence 688999999999983321 3677777632 2 1 4899999999999874
No 190
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=96.38 E-value=0.02 Score=65.79 Aligned_cols=109 Identities=13% Similarity=0.104 Sum_probs=76.4
Q ss_pred CCHHHHHHHHHHHHHHhhCCCeEEEEeecCCCCcEEEEEecCCCCCCccCCCCCCCCchHHHHHHHHhCCeeEee-ccCC
Q 037299 233 GDIKLLCDTVVESVRQLTGYDRVMVYRFHEDEHGEVVAESKRPDLEPYFGLHYPATDIPQASRFLFKQNRVRMIV-DCHA 311 (1111)
Q Consensus 233 ~~~~~l~~~~~~~vr~~~g~DRVmiY~F~~d~~G~VvaE~~~~~~~~~lg~~~pa~dip~~ar~ly~~n~~r~i~-d~~~ 311 (1111)
.+++++++.+++.+++++|+||+.||-+++++ |+.......++ ....+.++|.. ..-+...+..+..-.|+ |+..
T Consensus 213 ~dl~~~l~~i~~~~~~~~~~~~~~i~l~d~~~-~~l~~~~~~~~-~~~~~~~~~~~--~~~~~~v~~~~~~~~i~~d~~~ 288 (398)
T 1ykd_A 213 LDLEDTLKRVMDEAKELMNADRSTLWLIDRDR-HELWTKITQDN-GSTKELRVPIG--KGFAGIVAASGQKLNIPFDLYD 288 (398)
T ss_dssp CCHHHHHHHHHHHHHHHTTEEEEEEEEEETTT-TEEEEEEECSS-SCEEEEEEETT--SHHHHHHHHHCCCEEECSCGGG
T ss_pred CCHHHHHHHHHHHHHHHhCcCeEEEEEEECCC-CEEEEEEecCC-CceeeeeccCC--CchhhHHhccCCeEEecccccc
Confidence 48999999999999999999999999999986 44444443222 12233455543 23445677888888888 8764
Q ss_pred CcceeecCCCCCCcccccCccccCCChhH--HHHHHhcCcceEEEEEEE-EcCCCcccc
Q 037299 312 TPLCVIQDEGLMQPLCLVGSTLRAPHGCH--AQYMANMGSIASLALAVI-INGNDEEAV 367 (1111)
Q Consensus 312 ~~~~~~~~~~~~~~ldls~~~lRsvsp~h--~~yl~nmgv~asl~~~i~-~~~~~~~~~ 367 (1111)
.|-- ..+ ..-...+++++-|++||+ .+|+.+|..
T Consensus 289 ~~~~----------------------~~~~~~~~~~~~~~~s~l~vPl~~~~~~~iGvl 325 (398)
T 1ykd_A 289 HPDS----------------------ATAKQIDQQNGYRTCSLLCMPVFNGDQELIGVT 325 (398)
T ss_dssp STTC----------------------HHHHHHHHHHTCCCCCEEEEEEECSSSCEEEEE
T ss_pred Cccc----------------------CcccchhhhcCCeeeeEEEEeeecCCCCEEEEE
Confidence 4322 223 222346778999999999 599999865
No 191
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=96.26 E-value=0.0065 Score=64.58 Aligned_cols=52 Identities=15% Similarity=0.201 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhhcCC---------------CCCceEEEEEEEccccCCCCceeEEEEEEEeeCCCCCChhhhhhccCC
Q 037299 995 QVLADFLLNMVRYSP---------------SAEGWVEIHVRPTLKQSSEGQTIVHNEFRMVCPGEGLPPELVQDMFHS 1057 (1111)
Q Consensus 995 qVl~nLl~NAik~t~---------------~~~g~I~I~v~~~~~~~~~~~~~~~v~i~V~DnG~GIp~e~~~~iFep 1057 (1111)
.+|.||+.||+++.. .....|.|.+ ..+ ...|+|.|||+||+++++...|..
T Consensus 50 ~~lrELI~NA~DA~~~~r~~~~~~~~~~~~~~~~~I~i~~--~~~---------~~~i~I~DnG~GMs~edl~~~~~~ 116 (235)
T 2ior_A 50 IFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSF--DKD---------KRTLTISDNGVGMTRDEVIDHLGT 116 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCCCCEEEEE--ETT---------TTEEEEEECSSCCCHHHHHHHHTT
T ss_pred HHHHHHHhCHHHHHHHHHhhhccCccccCCCceEEEEEEE--cCC---------ceEEEEEECCCCCCHHHHHHHHHH
Confidence 688999999999862 2123455543 222 114888999999999998877754
No 192
>3dba_A CONE CGMP-specific 3',5'-cyclic phosphodiesterase alpha'; 3', GAF domain, cyclic nucleotide phosphodiesterase hydrolase, lipoprotein, membrane; HET: 35G; 2.57A {Gallus gallus}
Probab=96.25 E-value=0.013 Score=59.34 Aligned_cols=124 Identities=10% Similarity=0.149 Sum_probs=83.2
Q ss_pred HHHHHHHHHhhcCCCC-CHHHHHHHHHHHHHHhhCCCeEEEEeecCCCC-cEEEEEec----CCCC-----CCccCCCCC
Q 037299 218 KLAVRAISQLQSLPGG-DIKLLCDTVVESVRQLTGYDRVMVYRFHEDEH-GEVVAESK----RPDL-----EPYFGLHYP 286 (1111)
Q Consensus 218 ~~~~~~i~~l~~~~~~-~~~~l~~~~~~~vr~~~g~DRVmiY~F~~d~~-G~VvaE~~----~~~~-----~~~lg~~~p 286 (1111)
..+.++...|.+ .. +++++++.+++.+++++|+||..+|=++++.. ++.++... ...+ .+.-+.++|
T Consensus 7 ~~L~eis~~l~~--~~~dl~~ll~~il~~~~~~~~a~~~~i~L~d~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~ 84 (180)
T 3dba_A 7 NILFELLTEIQD--EAGSMEKIVHKTLQRLSQLLAADRCSMFICRSRNGIPEVATRLLNVTPTSKFEDNLVNPDKETVFP 84 (180)
T ss_dssp HHHHHHHTTSCS--SSSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEETTEEEEEEEEEEECTTCCHHHHBCCGGGCCEEC
T ss_pred HHHHHHHHHHHH--hhhcHHHHHHHHHHHHHHHhCcceEEEEEEeCCCCcceeeeeeeccccCccchhhccccccceeee
Confidence 334455555655 67 89999999999999999999999999998754 56665432 2222 234455666
Q ss_pred CCCchHHHHHHHHhCCeeEeeccCCCcceeecCCCCCCcccccCccccCCChhHHHHHHhcCcceEEEEEEEEcCCCccc
Q 037299 287 ATDIPQASRFLFKQNRVRMIVDCHATPLCVIQDEGLMQPLCLVGSTLRAPHGCHAQYMANMGSIASLALAVIINGNDEEA 366 (1111)
Q Consensus 287 a~dip~~ar~ly~~n~~r~i~d~~~~~~~~~~~~~~~~~ldls~~~lRsvsp~h~~yl~nmgv~asl~~~i~~~~~~~~~ 366 (1111)
... --+..-+..+..-+|+|+...|-- ..........++++-|++||+.+|+.-|.
T Consensus 85 ~~~--gi~g~v~~tg~~v~i~d~~~d~~f----------------------~~~~~~~~~~~~~S~L~vPl~~~~~viGV 140 (180)
T 3dba_A 85 LDI--GIAGWVAHTKKFFNIPDVKKNNHF----------------------SDYLDKKTGYTTVNMMAIPITQGKEVLAV 140 (180)
T ss_dssp TTS--SHHHHHHHHTCCEEESCGGGCTTC----------------------CCHHHHHHCCCCCCEEEEEEEETTEEEEE
T ss_pred CCC--CHHHHHHHhCCEEEecCCCCCccc----------------------ChhhccccCccccEEEEEEeccCCEEEEE
Confidence 442 235667777888888988655421 11122234567899999999998655554
Q ss_pred c
Q 037299 367 V 367 (1111)
Q Consensus 367 ~ 367 (1111)
.
T Consensus 141 L 141 (180)
T 3dba_A 141 V 141 (180)
T ss_dssp E
T ss_pred E
Confidence 3
No 193
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=96.12 E-value=0.01 Score=62.21 Aligned_cols=73 Identities=10% Similarity=0.191 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHhhcCCC-CCceEEEEEEEccccCCCCceeEEEEEEEeeCCCCCChhhh--------hhccCC----
Q 037299 991 ARIQQVLADFLLNMVRYSPS-AEGWVEIHVRPTLKQSSEGQTIVHNEFRMVCPGEGLPPELV--------QDMFHS---- 1057 (1111)
Q Consensus 991 ~~L~qVl~nLl~NAik~t~~-~~g~I~I~v~~~~~~~~~~~~~~~v~i~V~DnG~GIp~e~~--------~~iFep---- 1057 (1111)
..|..++.+++.||++..-. ....|.|.+... . .|+|.|||.|||.+.. +-+|..
T Consensus 34 ~gl~~lv~ElvdNsiDea~~g~~~~I~V~i~~~-g-----------~i~V~DnGrGIp~~~~~~~~~~~~e~i~t~lhag 101 (220)
T 4duh_A 34 TGLHHMVFEVVDNAIDEALAGHCKEIIVTIHAD-N-----------SVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAG 101 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCEEEEEECTT-S-----------CEEEEECSSCCCCSEETTTTEEHHHHHHHSTTCS
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCEEEEEEeCC-C-----------cEEEEECCcCcccccccccCcchhhheeeecccC
Confidence 57889999999999987332 125677776431 1 3899999999999874 234421
Q ss_pred --C----C-CCCC-ccchHHHHHHHH
Q 037299 1058 --S----R-WMTQ-EGLGLSMCRKIL 1075 (1111)
Q Consensus 1058 --f----~-~~~G-~GLGL~i~r~iV 1075 (1111)
| + .+.| .|.|++.+-.+-
T Consensus 102 ~Kfd~~~yk~SgGlhGvG~svvNAlS 127 (220)
T 4duh_A 102 GKFDDNSYKVSGGLHGVGVSVVNALS 127 (220)
T ss_dssp SCCCTTC--------CCCHHHHHHTE
T ss_pred CCcCCCccccccCccceecchhcccc
Confidence 2 1 1123 489999986553
No 194
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=95.95 E-value=0.015 Score=66.44 Aligned_cols=74 Identities=14% Similarity=0.294 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHhhcC--CCCCceEEEEEEEccccCCCCceeEEEEEEEeeCCCCCChhhh--------hhccCC--
Q 037299 990 QARIQQVLADFLLNMVRYS--PSAEGWVEIHVRPTLKQSSEGQTIVHNEFRMVCPGEGLPPELV--------QDMFHS-- 1057 (1111)
Q Consensus 990 ~~~L~qVl~nLl~NAik~t--~~~~g~I~I~v~~~~~~~~~~~~~~~v~i~V~DnG~GIp~e~~--------~~iFep-- 1057 (1111)
..-|..++.+++.||++.. ......|.|.+...+. .|+|.|||.|||.+.. +-+|..
T Consensus 50 ~~GL~~lv~EivdNsiDe~~~~g~~~~I~V~i~~~~~-----------~I~V~DnGrGIPv~~h~~~~~~~~e~v~t~lh 118 (400)
T 1zxm_A 50 VPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPENN-----------LISIWNNGKGIPVVEHKVEKMYVPALIFGQLL 118 (400)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTT-----------EEEEEEESSCCCCSEETTTTEEHHHHHHHSSS
T ss_pred cchHHHHHHHHHhhHHhHHhhcCCCceEEEEEECCCC-----------EEEEEECCCcccCccccccCccchhheeeeec
Confidence 3578999999999999885 1114678888754322 5889999999999873 334442
Q ss_pred ----C----C-CCCC-ccchHHHHHHH
Q 037299 1058 ----S----R-WMTQ-EGLGLSMCRKI 1074 (1111)
Q Consensus 1058 ----f----~-~~~G-~GLGL~i~r~i 1074 (1111)
| + -+.| .|.|++.+-.+
T Consensus 119 agsKf~~~~ykvSgGlhGvGlsvVnAl 145 (400)
T 1zxm_A 119 TSSNYDDDEKKVTGGRNGYGAKLCNIF 145 (400)
T ss_dssp EESCCCGGGCCCCSCCSSCHHHHHHHT
T ss_pred ccCCCCCCcccccCCccccceeeeEEe
Confidence 2 1 2223 49999999555
No 195
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=95.85 E-value=0.011 Score=61.96 Aligned_cols=73 Identities=16% Similarity=0.280 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCC-CCceEEEEEEEccccCCCCceeEEEEEEEeeCCCCCChhh-------hhhccCC----
Q 037299 990 QARIQQVLADFLLNMVRYSPS-AEGWVEIHVRPTLKQSSEGQTIVHNEFRMVCPGEGLPPEL-------VQDMFHS---- 1057 (1111)
Q Consensus 990 ~~~L~qVl~nLl~NAik~t~~-~~g~I~I~v~~~~~~~~~~~~~~~v~i~V~DnG~GIp~e~-------~~~iFep---- 1057 (1111)
..-|.+++.+++.||++..-. ....|.|.+.. + + .|+|.|||.|||.+. .+-+|..
T Consensus 38 ~~gl~~~v~Eiv~NaiD~~~~g~~~~I~V~i~~--~--g--------~i~V~DnG~GIp~~~h~~~~~~~e~v~t~lhag 105 (226)
T 4emv_A 38 GAGLHHLVWEIVDNAVDEALSGFGDRIDVTINK--D--G--------SLTVQDHGRGMPTGMHAMGIPTVEVIFTILHAG 105 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECT--T--S--------CEEEEECSSCCCCSBCGGGCBHHHHHHHCBC--
T ss_pred cccHHHHHHHHHHHHHHHHhcCCCcEEEEEEeC--C--C--------eEEEEEcCCCccccccccCceehheeEEeeccc
Confidence 457889999999999987432 12466666532 2 1 489999999999997 5555632
Q ss_pred --C----C-CCCC-ccchHHHHHHH
Q 037299 1058 --S----R-WMTQ-EGLGLSMCRKI 1074 (1111)
Q Consensus 1058 --f----~-~~~G-~GLGL~i~r~i 1074 (1111)
| + .+.| .|.|++.+-.+
T Consensus 106 ~Kfd~~~yk~SgGlhGvG~svvNAL 130 (226)
T 4emv_A 106 GKFGQGGYKTSGGLHGVGSSVVNAL 130 (226)
T ss_dssp ------------CGGGCCHHHHHHT
T ss_pred CccCccceEeccccccccchhhhhc
Confidence 2 1 1223 49999988544
No 196
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=95.66 E-value=0.032 Score=63.14 Aligned_cols=49 Identities=10% Similarity=0.063 Sum_probs=36.2
Q ss_pred cHHHHHHHHHHHHHHHhhcCCC-CCceEEEEEEEccccCCCCceeEEEEEEEeeCCCCCChh
Q 037299 989 DQARIQQVLADFLLNMVRYSPS-AEGWVEIHVRPTLKQSSEGQTIVHNEFRMVCPGEGLPPE 1049 (1111)
Q Consensus 989 D~~~L~qVl~nLl~NAik~t~~-~~g~I~I~v~~~~~~~~~~~~~~~v~i~V~DnG~GIp~e 1049 (1111)
+...|..++.+|+.||++..-. ....|.|.+...+ .|+|.|||.|||.|
T Consensus 27 ~~~gl~~~v~ElvdNsiDe~~~g~a~~I~V~i~~~g------------~I~V~DnGrGIp~e 76 (369)
T 3cwv_A 27 GEYGLHHLVYFLLDVAYEEARRGECRDVVLEVGGDG------------SIALFCTSRTVTAE 76 (369)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECTTS------------CEEEEEEESSCCHH
T ss_pred CCchHHHHHHHHHhhhHhHHhhCCCCEEEEEEeCCC------------EEEEEECCCCcCHh
Confidence 4568999999999999996322 1256777764321 48999999999984
No 197
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=95.64 E-value=0.026 Score=64.88 Aligned_cols=73 Identities=16% Similarity=0.409 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHhhcC---CCCCceEEEEEEEccccCCCCceeEEEEEEEeeCCCCCChhhhhh--------ccCC--
Q 037299 991 ARIQQVLADFLLNMVRYS---PSAEGWVEIHVRPTLKQSSEGQTIVHNEFRMVCPGEGLPPELVQD--------MFHS-- 1057 (1111)
Q Consensus 991 ~~L~qVl~nLl~NAik~t---~~~~g~I~I~v~~~~~~~~~~~~~~~v~i~V~DnG~GIp~e~~~~--------iFep-- 1057 (1111)
.-|.+++.+++.||++.. +. ...|.|++...+. .|+|.|||.|||.+..++ +|..
T Consensus 63 ~GL~~lv~EivdNaiDe~~~~g~-~~~I~V~i~~d~~-----------sI~V~DnGrGIPv~~h~~~g~~~~E~v~t~Lh 130 (418)
T 1pvg_A 63 PGLFKIFDEILVNAADNKVRDPS-MKRIDVNIHAEEH-----------TIEVKNDGKGIPIEIHNKENIYIPEMIFGHLL 130 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTT-CCEEEEEEETTTT-----------EEEEEEESSCCCCSBCTTTCSBHHHHHHHSSS
T ss_pred chHHHHHHHHHhCHHHHHHhcCC-CCEEEEEEECCCC-----------EEEEEECCCcccCcccccCCcccceEEEEEEe
Confidence 478899999999999764 22 4678888765432 488899999999987543 3422
Q ss_pred ----C----CCC-CC-ccchHHHHHHHH
Q 037299 1058 ----S----RWM-TQ-EGLGLSMCRKIL 1075 (1111)
Q Consensus 1058 ----f----~~~-~G-~GLGL~i~r~iV 1075 (1111)
| ++. +| .|.|.+.|-.+-
T Consensus 131 aGgKfd~~~ykvSGGLhGVG~SvVNALS 158 (418)
T 1pvg_A 131 TSSNYDDDEKKVTGGRNGYGAKLCNIFS 158 (418)
T ss_dssp EESCCCTTSCCCCSCCSSCHHHHHHHTE
T ss_pred cccccCCCceeccCCccceeeeeeeecc
Confidence 2 222 23 499999995543
No 198
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=95.45 E-value=0.0025 Score=81.53 Aligned_cols=123 Identities=12% Similarity=0.161 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhCCCeEEEEeecCCCCcE--EEE---EecCC-CCC--CccCCCCCCCCc
Q 037299 219 LAVRAISQLQSLPGGDIKLLCDTVVESVRQLTGYDRVMVYRFHEDEHGE--VVA---ESKRP-DLE--PYFGLHYPATDI 290 (1111)
Q Consensus 219 ~~~~~i~~l~~~~~~~~~~l~~~~~~~vr~~~g~DRVmiY~F~~d~~G~--Vva---E~~~~-~~~--~~lg~~~pa~di 290 (1111)
.+.+....|.+ +.+++++++.+++.+++++|+||+.||.+++++.|. .++ +.... ..+ +..+..||...
T Consensus 154 ~L~eis~~L~~--~ldl~~ll~~il~~l~~~l~ad~~~I~L~d~~~~~~~~lv~~~f~~~~G~~~~~~~~~~~~~p~~~- 230 (878)
T 3bjc_A 154 RLLELVKDISS--HLDVTALCHKIFLHIHGLISADRYSLFLVCEDSSNDKFLISRLFDVAEGSTLEEVSNNCIRLEWNK- 230 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhh--cCCHHHHHHHHHHHHHHHhCCCeEEEEEEeCCCCCceeEEeeecccccCccccccCCcceeeeCCc-
Confidence 34455556666 569999999999999999999999999999987653 332 11111 111 24455665431
Q ss_pred hHHHHHHHHhCCeeEeeccCCCcceeecCCCCCCcccccCccccCCChhHHHHHHhcCcceEEEEEEEE-cCCCcccc
Q 037299 291 PQASRFLFKQNRVRMIVDCHATPLCVIQDEGLMQPLCLVGSTLRAPHGCHAQYMANMGSIASLALAVII-NGNDEEAV 367 (1111)
Q Consensus 291 p~~ar~ly~~n~~r~i~d~~~~~~~~~~~~~~~~~ldls~~~lRsvsp~h~~yl~nmgv~asl~~~i~~-~~~~~~~~ 367 (1111)
.-+...+..+..-.|+|+...|-- ..........++++-|++||+. +|+.+|..
T Consensus 231 -gi~g~v~~~g~pv~I~D~~~dp~f----------------------~~~~~~~~~~~~~S~L~vPL~~~~g~viGvL 285 (878)
T 3bjc_A 231 -GIVGHVAALGEPLNIKDAYEDPRF----------------------NAEVDQITGYKTQSILCMPIKNHREEVVGVA 285 (878)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred -cHHHHHHhcCceEEeCCcccCccc----------------------ccccccccCCccceEEEEeeEcCCCCEEEEE
Confidence 123344555666667776543311 1122223455689999999999 88999866
No 199
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=95.17 E-value=0.0068 Score=63.83 Aligned_cols=54 Identities=13% Similarity=0.177 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhhcCCC-------------CCceEEEEEEEccccCCCCceeEEEEEEEeeCCCCCChhhhhhccCC
Q 037299 995 QVLADFLLNMVRYSPS-------------AEGWVEIHVRPTLKQSSEGQTIVHNEFRMVCPGEGLPPELVQDMFHS 1057 (1111)
Q Consensus 995 qVl~nLl~NAik~t~~-------------~~g~I~I~v~~~~~~~~~~~~~~~v~i~V~DnG~GIp~e~~~~iFep 1057 (1111)
-+|.+|+.||+++... .++.+.|.+....+ .-.|+|.|||+||+++.+...|..
T Consensus 35 ~~lrELi~NA~DA~~k~r~~~~~~~~~~~~~~~i~I~I~~d~~---------~~~i~V~DnG~GMs~edl~~~l~~ 101 (228)
T 3t0h_A 35 IFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQ---------DRTLTIVDTGIGMTKADLINNLGT 101 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETT---------TTEEEEEECSCCCCHHHHHTGGGS
T ss_pred HHHHHHHHCHHHHHHHHHhhhccCcccccCCCceEEEEEEeCC---------eeEEEEEeCCCCCCHHHHHHHHHh
Confidence 5789999999987320 12345555544322 125788899999999998765543
No 200
>1oj5_A Steroid receptor coactivator 1A; transcriptional coactivator, complex, LXXLL motif, transcriptional regulation; 2.2A {Mus musculus} SCOP: d.110.3.8
Probab=94.87 E-value=0.011 Score=55.83 Aligned_cols=99 Identities=8% Similarity=-0.004 Sum_probs=72.9
Q ss_pred ccccCCCCccccchhhhHHHhCCCc--cccccccccccccccccccCChhhHH--HHHHHHHhhhCCCCcceeeeeeecC
Q 037299 750 IFASDENTCCSEWNTAMEKLTGWSR--GDIIGKMLVGEVFGSCCRLKGPDALT--KFMIALHNAFGGQDTEKFPFPLFDR 825 (1111)
Q Consensus 750 I~v~D~~g~ii~~N~a~~~l~G~~~--eeliGk~l~~~v~~~~~~l~~~~~~~--~~~~~l~~~~~~~~~~~~e~~~~~~ 825 (1111)
+.-.|.+|+|+++..... ..++.+ +|++|+.+ +++.|++|.. .+.+...+++..+.....-++|+.+
T Consensus 10 ~sRh~~dGKf~~vDq~~~-r~~~~~g~qdLlGrsi--------y~f~H~~D~~~s~l~~h~~~vl~~Gq~~S~~YRfr~k 80 (132)
T 1oj5_A 10 MTKQDTTGKIISIDTSSL-RAAGRTGWEDLVRKCI--------YAFFQPQGREPSYARQLFQEVMTRGTASSPSYRFILN 80 (132)
T ss_dssp EEEECTTCCEEEEECHHH-HTTCCSCHHHHHHHHH--------HHHTSCBTTBCCHHHHHHHHHHHHSEEECCCEEEECT
T ss_pred EEeecCCCcEEEEecccc-cccccccHHHHHHHHH--------HHHhCcccchHHHHHHHHHHHHHcCCccccceEEEec
Confidence 445689999999999887 477777 89999975 4556677754 6777777777667777788999999
Q ss_pred CCCEEEEEEEEeeeecCC-CCEEEEEeeeeccc
Q 037299 826 NGKYVQALLTANKRVNME-GQIVGAFCFLQIAS 857 (1111)
Q Consensus 826 dG~~~~v~~~~~pi~d~~-G~v~g~v~~~~DIT 857 (1111)
+|.++|+......+++.. +++-.++++-.-+.
T Consensus 81 ~g~~V~~qT~sk~f~np~t~e~e~Ivs~n~v~r 113 (132)
T 1oj5_A 81 DGTMLSAHTRCKLCYPQSPDMQPFIMGIHIIDR 113 (132)
T ss_dssp TSCEEEEEEEEEEECC----CCCEEEEEEEEEC
T ss_pred CCcEEEEEEEEEEecCCCCCCCCEEEEEEEEEc
Confidence 999999999988887753 34444555544443
No 201
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=94.70 E-value=0.076 Score=54.62 Aligned_cols=50 Identities=10% Similarity=0.295 Sum_probs=37.4
Q ss_pred cHHHHHHHHHHHHHHHhhcCCCC-CceEEEEEEEccccCCCCceeEEEEEEEeeCCCCCChhh
Q 037299 989 DQARIQQVLADFLLNMVRYSPSA-EGWVEIHVRPTLKQSSEGQTIVHNEFRMVCPGEGLPPEL 1050 (1111)
Q Consensus 989 D~~~L~qVl~nLl~NAik~t~~~-~g~I~I~v~~~~~~~~~~~~~~~v~i~V~DnG~GIp~e~ 1050 (1111)
+...|..++.+++.||++..-.. ...|.|.+... . .|+|.|||.|||.+.
T Consensus 28 ~~~gl~~~v~Elv~NsiD~~~ag~~~~I~V~i~~~-g-----------~i~V~DnG~Gip~~~ 78 (198)
T 3ttz_A 28 SERGLHHLVWEIVDNSIDEALAGYANQIEVVIEKD-N-----------WIKVTDNGRGIPVDI 78 (198)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEGG-G-----------EEEEEECSSCCCCSB
T ss_pred CCcchHHHHHHHHHHHHhHHhcCCCcEEEEEEeCC-C-----------eEEEEECCCCccccc
Confidence 35688999999999999863221 36788876532 1 489999999999873
No 202
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=94.63 E-value=0.038 Score=66.85 Aligned_cols=50 Identities=14% Similarity=0.225 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhhcCC---------------CCCceEEEEEEEccccCCCCceeEEEEEEEeeCCCCCChhhhhhcc
Q 037299 995 QVLADFLLNMVRYSP---------------SAEGWVEIHVRPTLKQSSEGQTIVHNEFRMVCPGEGLPPELVQDMF 1055 (1111)
Q Consensus 995 qVl~nLl~NAik~t~---------------~~~g~I~I~v~~~~~~~~~~~~~~~v~i~V~DnG~GIp~e~~~~iF 1055 (1111)
-+|.+|+.||+++.. .....|.|.+..... .|+|.|||+||+.+.+..-|
T Consensus 29 ifLRELIsNA~DA~~k~r~~~ltd~~~~~~~~~~~I~I~~d~~~~-----------~I~I~DnGiGMt~edl~~~l 93 (677)
T 2cg9_A 29 IFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQK-----------VLEIRDSGIGMTKAELINNL 93 (677)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSCTTTTTTCCCCCEEEEEEGGGT-----------EEEEEECSCCCCHHHHHGGG
T ss_pred HHHHHHhhCHHHHHHHHHHHhccChhhccCCCCcEEEEEEeCCCC-----------EEEEEECCCCCCHHHHHHHH
Confidence 478999999998852 112345555432211 58899999999999876655
No 203
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=94.61 E-value=0.064 Score=61.12 Aligned_cols=70 Identities=13% Similarity=0.225 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhhcCCC-CCceEEEEEEEccccCCCCceeEEEEEEEeeCCCCCChhhhh--------hccCC------C
Q 037299 994 QQVLADFLLNMVRYSPS-AEGWVEIHVRPTLKQSSEGQTIVHNEFRMVCPGEGLPPELVQ--------DMFHS------S 1058 (1111)
Q Consensus 994 ~qVl~nLl~NAik~t~~-~~g~I~I~v~~~~~~~~~~~~~~~v~i~V~DnG~GIp~e~~~--------~iFep------f 1058 (1111)
..++.+++.||++..-. ....|.|++.. + + .|+|.|||.|||.+..+ -+|.. |
T Consensus 52 ~hlv~EivdNsiDea~ag~~~~I~V~i~~--d--g--------sI~V~DnGrGIPv~~h~~~~~~~~e~i~t~lhaggKf 119 (408)
T 3lnu_A 52 NHLAQEVIDNSVDEALAGHAKQIEVTLYK--D--G--------SCEVSDDGRGMPVDIHPEEKIPGVELILTRLHAGGKF 119 (408)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCEEEEEECT--T--S--------CEEEEECSSCCCCSBCTTTCSBHHHHHHHCC------
T ss_pred chhhHHHHHHHHHHhhcCCCceEEEEEeC--C--C--------eEEEEEcCCCCCcccccccCCcchheEEEecccCCCc
Confidence 67888888888876322 13567776632 2 1 48999999999998743 34422 2
Q ss_pred ----CCC-CC-ccchHHHHHHHH
Q 037299 1059 ----RWM-TQ-EGLGLSMCRKIL 1075 (1111)
Q Consensus 1059 ----~~~-~G-~GLGL~i~r~iV 1075 (1111)
++. .| .|.|++.|-.+-
T Consensus 120 d~~~ykvSgGlhGvG~svVNALS 142 (408)
T 3lnu_A 120 NNRNYTFSGGLHGVGVSVVNALS 142 (408)
T ss_dssp --------------CHHHHHHTE
T ss_pred CCCceeecCCccccccceehhcc
Confidence 122 23 499999885443
No 204
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=94.59 E-value=0.097 Score=47.64 Aligned_cols=56 Identities=16% Similarity=0.242 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhc-ccc
Q 037299 875 FARLKELAYICQEIKNPLSGVSFTNSLLEATDLTEDQKQLLETSAACEKQMLKIIKDV-DLE 935 (1111)
Q Consensus 875 ~~r~~~La~isHEIrnPLt~I~~~~~LL~~~~l~e~~~~~l~~i~~~~~~l~~lI~dL-dls 935 (1111)
..+.++++.++|++++|++.|.+..+.+... ..+..+.+.+.+.++..+++++ +++
T Consensus 58 ~~~~~~~~~~shel~~~l~~i~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~ 114 (115)
T 3zrx_A 58 DDRTLLMAGVSHDLRTPLTRIRLATEMMSEQ-----DGYLAESINKDIEECNAIIEQFIDYL 114 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCGG-----GHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3466789999999999999999998877543 2556777888889999999886 654
No 205
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=94.50 E-value=0.02 Score=69.28 Aligned_cols=57 Identities=16% Similarity=0.194 Sum_probs=37.6
Q ss_pred EEecHHHHHHHHHHHHHHHhhcCC---------------CCCceEEEEEEEccccCCCCceeEEEEEEEeeCCCCCChhh
Q 037299 986 VYGDQARIQQVLADFLLNMVRYSP---------------SAEGWVEIHVRPTLKQSSEGQTIVHNEFRMVCPGEGLPPEL 1050 (1111)
Q Consensus 986 v~~D~~~L~qVl~nLl~NAik~t~---------------~~~g~I~I~v~~~~~~~~~~~~~~~v~i~V~DnG~GIp~e~ 1050 (1111)
+|.++ .-+|.+|+.||+++.. .....|.|.+..... .|+|.|||+||+.++
T Consensus 42 LYsn~---eifLRELIsNA~DA~dk~r~~~l~~~~~~~~a~~~~I~I~~d~~~~-----------~I~I~DnGiGMt~ed 107 (666)
T 2o1u_A 42 LYKNK---EIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKN-----------LLHVTDTGVGMTREE 107 (666)
T ss_dssp TSSSC---TTHHHHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEEETTTT-----------EEEEEECSCCCCHHH
T ss_pred ccCCc---hHHHHHHHhhHHHHHHHHHHHhccCchhccCCCccEEEEEEeCCCC-----------EEEEEECCCCCCHHH
Confidence 44554 2588999999999851 212345555432211 478999999999998
Q ss_pred hhhccC
Q 037299 1051 VQDMFH 1056 (1111)
Q Consensus 1051 ~~~iFe 1056 (1111)
+..-|.
T Consensus 108 l~~~l~ 113 (666)
T 2o1u_A 108 LVKNLG 113 (666)
T ss_dssp HHHHTT
T ss_pred HHHHHh
Confidence 766553
No 206
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=94.09 E-value=0.031 Score=59.33 Aligned_cols=51 Identities=18% Similarity=0.163 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhhcCC---------------CCCceEEEEEEEccccCCCCceeEEEEEEEeeCCCCCChhhhhhccC
Q 037299 995 QVLADFLLNMVRYSP---------------SAEGWVEIHVRPTLKQSSEGQTIVHNEFRMVCPGEGLPPELVQDMFH 1056 (1111)
Q Consensus 995 qVl~nLl~NAik~t~---------------~~~g~I~I~v~~~~~~~~~~~~~~~v~i~V~DnG~GIp~e~~~~iFe 1056 (1111)
.+|.+|+.||+++.. .....|.|.. ..+ .-.|+|.|||+||+++++...|.
T Consensus 35 ~~lrELI~NA~DA~ak~~~~~~~~~~~~~~~~~~~I~i~~--d~~---------~~~i~I~DnG~GMt~edl~~~l~ 100 (236)
T 2gqp_A 35 IFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKC--DKE---------KNLLHVTDTGVGMTREELVKNLG 100 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEE--ETT---------TTEEEEEECSCCCCHHHHHHHHH
T ss_pred HHHHHHHHhHHHhhhhhhhhcccCcccccCCCceEEEEEE--cCC---------CCEEEEEECCcCCCHHHHHHHHh
Confidence 678999999999843 1123455543 222 11578999999999999876664
No 207
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=93.86 E-value=0.065 Score=63.73 Aligned_cols=51 Identities=16% Similarity=0.197 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhhcCC---------------CCCceEEEEEEEccccCCCCceeEEEEEEEeeCCCCCChhhhhhccC
Q 037299 995 QVLADFLLNMVRYSP---------------SAEGWVEIHVRPTLKQSSEGQTIVHNEFRMVCPGEGLPPELVQDMFH 1056 (1111)
Q Consensus 995 qVl~nLl~NAik~t~---------------~~~g~I~I~v~~~~~~~~~~~~~~~v~i~V~DnG~GIp~e~~~~iFe 1056 (1111)
.+|.+|+.||+++.. .....|.|.+..... .|+|.|||+||+.+.+..-|.
T Consensus 30 ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~-----------~I~I~DnGiGMt~edl~~~l~ 95 (559)
T 1y4s_A 30 IFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKR-----------TLTISDNGVGMTRDEVIDHLG 95 (559)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEEETTTT-----------EEEEEECSSCCCHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhHhHHHhhccCchhccCCCccEEEEEEeCCCc-----------EEEEEECCCCCCHHHHHHHHh
Confidence 578999999999861 212456665432211 578889999999998765443
No 208
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=93.54 E-value=0.026 Score=60.75 Aligned_cols=71 Identities=17% Similarity=0.190 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhhcCC-------------CCCceEEEEEEEccccCCCCceeEEEEEEEeeCCCCCChhhhhhccC----C
Q 037299 995 QVLADFLLNMVRYSP-------------SAEGWVEIHVRPTLKQSSEGQTIVHNEFRMVCPGEGLPPELVQDMFH----S 1057 (1111)
Q Consensus 995 qVl~nLl~NAik~t~-------------~~~g~I~I~v~~~~~~~~~~~~~~~v~i~V~DnG~GIp~e~~~~iFe----p 1057 (1111)
-.|.+|+.||.++.. ...+.+.|.+....+ .-.|+|.|||+||+++.+..-+. .
T Consensus 49 ifLRELIsNA~DA~~k~r~~~l~d~~~~~~~~~l~I~I~~d~~---------~~tLtI~DNGiGMt~edL~~~LgtIa~S 119 (281)
T 3peh_A 49 VFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKE---------KNILSITDTGIGMTKVDLINNLGTIAKS 119 (281)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETT---------TTEEEEEECSCCCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHhChHHHHHHHHHHhcCCchhccCCCceEEEEEEcCC---------CcEEEEEeCCCCCCHHHHHHHHHHHHhH
Confidence 467899999988742 112334444444322 11578889999999998653221 1
Q ss_pred ---------------CCCCCCccchHHHHHHH
Q 037299 1058 ---------------SRWMTQEGLGLSMCRKI 1074 (1111)
Q Consensus 1058 ---------------f~~~~G~GLGL~i~r~i 1074 (1111)
....+.-|+|++-+..+
T Consensus 120 gtk~f~e~l~~~~~d~~~IGqFGVGFySaf~v 151 (281)
T 3peh_A 120 GTSNFLEAISKSGGDMSLIGQFGVGFYSAFLV 151 (281)
T ss_dssp CHHHHHHHHHHTTCCSTTTTTTTCGGGGGGGT
T ss_pred hhhhHHHhhhccccccccccccCccchhhccc
Confidence 11223459999887554
No 209
>3mmh_A FRMSR, methionine-R-sulfoxide reductase; oxidoreductase; HET: SME MRD; 1.25A {Neisseria meningitidis} SCOP: d.110.2.0
Probab=93.27 E-value=1.8 Score=43.06 Aligned_cols=117 Identities=12% Similarity=0.107 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHh-hcCCCCCHHHHHHHHHHHHHHhhCCCeEEEEeecCCCCcEEEEEecCCCCCCccCCCCCCCCchHHH
Q 037299 216 SQKLAVRAISQL-QSLPGGDIKLLCDTVVESVRQLTGYDRVMVYRFHEDEHGEVVAESKRPDLEPYFGLHYPATDIPQAS 294 (1111)
Q Consensus 216 ~~~~~~~~i~~l-~~~~~~~~~~l~~~~~~~vr~~~g~DRVmiY~F~~d~~G~VvaE~~~~~~~~~lg~~~pa~dip~~a 294 (1111)
.|..+...|+++ .. ..|+.+.++.+++.+.+.+++||+.+|-+++++. +.+..+... .. -..+||-.. --+
T Consensus 14 ~~~~ll~~i~~ll~~--~~dl~~~L~~v~~~l~~~l~~~~~~iyL~d~~~~-~L~l~a~~G-~~--~~~~i~~ge--Gi~ 85 (167)
T 3mmh_A 14 LYREVLPQIESVVAD--ETDWVANLANTAAVLKEAFGWFWVGFYLVDTRSD-ELVLAPFQG-PL--ACTRIPFGR--GVC 85 (167)
T ss_dssp HHHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHHHCCSEEEEEEEETTTT-EEEEEEEES-SC--CCSEEETTS--HHH
T ss_pred HHHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHHcCCcEEEEEEEECCCC-EEEEEEecc-cc--cceEeccCC--ChH
Confidence 444444445444 34 5699999999999999999999999999998754 444333211 11 123443221 234
Q ss_pred HHHHHhCCeeEeeccCCCcceeecCCCCCCcccccCccccCCChhHHHHHHhcCcceEEEEEEEEcCCCcccc
Q 037299 295 RFLFKQNRVRMIVDCHATPLCVIQDEGLMQPLCLVGSTLRAPHGCHAQYMANMGSIASLALAVIINGNDEEAV 367 (1111)
Q Consensus 295 r~ly~~n~~r~i~d~~~~~~~~~~~~~~~~~ldls~~~lRsvsp~h~~yl~nmgv~asl~~~i~~~~~~~~~~ 367 (1111)
-.-+..++.-+|+|++..|--+ +| ..++++-+++||+.+|+..|..
T Consensus 86 G~v~~~g~~~~v~Dv~~~p~~~---------------------~~------~~~~~S~i~vPi~~~g~viGVL 131 (167)
T 3mmh_A 86 GQAWAKGGTVVVGDVDAHPDHI---------------------AC------SSLSRSEIVVPLFSDGRCIGVL 131 (167)
T ss_dssp HHHHHHTSCEEESCGGGSTTCC---------------------CS------STTCCEEEEEEEEETTEEEEEE
T ss_pred HHHHhCCcEEEECCcccCcchh---------------------hc------CccCCeEEEEEeccCCEEEEEE
Confidence 5567778888899987655321 11 1367899999999986655543
No 210
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=92.73 E-value=0.031 Score=59.51 Aligned_cols=52 Identities=13% Similarity=0.183 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhhcCCC-------------CCceEEEEEEEccccCCCCceeEEEEEEEeeCCCCCChhhhhhcc
Q 037299 995 QVLADFLLNMVRYSPS-------------AEGWVEIHVRPTLKQSSEGQTIVHNEFRMVCPGEGLPPELVQDMF 1055 (1111)
Q Consensus 995 qVl~nLl~NAik~t~~-------------~~g~I~I~v~~~~~~~~~~~~~~~v~i~V~DnG~GIp~e~~~~iF 1055 (1111)
-+|.+|+.||.++... .+..+.|.+....+ .-.|+|.|||+||+++.+..-|
T Consensus 63 iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~---------~~~I~I~DnG~GMt~edl~~~l 127 (256)
T 3o0i_A 63 IFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQ---------DRTLTIVDTGIGMTKADLINNL 127 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETT---------TTEEEEEECSCCCCHHHHHTHH
T ss_pred HHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEcCC---------ceEEEEecCCCCcCHHHHHHHH
Confidence 5789999999987321 12344555444322 1258889999999999875444
No 211
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=91.16 E-value=0.068 Score=56.32 Aligned_cols=49 Identities=14% Similarity=0.198 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhhcCC-------------CCCceEEEEEEEccccCCCCceeEEEEEEEeeCCCCCChhhhh
Q 037299 995 QVLADFLLNMVRYSP-------------SAEGWVEIHVRPTLKQSSEGQTIVHNEFRMVCPGEGLPPELVQ 1052 (1111)
Q Consensus 995 qVl~nLl~NAik~t~-------------~~~g~I~I~v~~~~~~~~~~~~~~~v~i~V~DnG~GIp~e~~~ 1052 (1111)
..|.+|+.||.++.. ..++.+.|.+....+ .-.|+|.|||+||+++++.
T Consensus 42 ifLRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~---------~~~L~I~DnGiGMt~edL~ 103 (239)
T 3nmq_A 42 IFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNPQ---------ERTLTLVDTGIGMTKADLI 103 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETT---------TTEEEEEECSCCCCHHHHH
T ss_pred HHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEeCC---------ccEEEEEeCCCCCCHHHHH
Confidence 578899999988732 112334555444332 1257889999999999874
No 212
>1vhm_A Protein YEBR; structural genomics, unknown function; HET: MES; 2.10A {Escherichia coli} SCOP: d.110.2.1
Probab=90.22 E-value=2.2 Score=43.56 Aligned_cols=100 Identities=11% Similarity=0.108 Sum_probs=66.7
Q ss_pred CCCHHHHHHHHHHHHHHhh-CCCeEEEEeecCCCCcEEEEEecCCCCCCccCCCCCCCCchHHHHHHHHhCCeeEeeccC
Q 037299 232 GGDIKLLCDTVVESVRQLT-GYDRVMVYRFHEDEHGEVVAESKRPDLEPYFGLHYPATDIPQASRFLFKQNRVRMIVDCH 310 (1111)
Q Consensus 232 ~~~~~~l~~~~~~~vr~~~-g~DRVmiY~F~~d~~G~VvaE~~~~~~~~~lg~~~pa~dip~~ar~ly~~n~~r~i~d~~ 310 (1111)
..|+.++++.+++.+++.+ ++|++.+|-+++ |+.+..+... .. -..+||-.. --+-.-+..++.-+|+|+.
T Consensus 41 ~~dl~~~L~~v~~ll~~~l~~~~~~~iyL~d~---~~L~l~~~~G-~~--~~~~i~~Ge--Gi~G~aa~tg~~i~V~Dv~ 112 (195)
T 1vhm_A 41 ETSFLATLANTSALLYERLTDINWAGFYLLED---DTLVLGPFQG-KI--ACVRIPVGR--GVCGTAVARNQVQRIEDVH 112 (195)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCSEEEEEEEET---TEEEEEEEEE-SC--CCSEEETTS--HHHHHHHHHTSCEEESCTT
T ss_pred CCcHHHHHHHHHHHHHHhCCCCCEEEEEEEEC---CEEEEEEecC-cc--cceEecCCC--ChHHHHHhcCCEEEECCcc
Confidence 4699999999999999999 999999999976 4544432211 11 134444321 1344566777888899987
Q ss_pred CCcceeecCCCCCCcccccCccccCCChhHHHHHHhcCcceEEEEEEEEcCCCccc
Q 037299 311 ATPLCVIQDEGLMQPLCLVGSTLRAPHGCHAQYMANMGSIASLALAVIINGNDEEA 366 (1111)
Q Consensus 311 ~~~~~~~~~~~~~~~ldls~~~lRsvsp~h~~yl~nmgv~asl~~~i~~~~~~~~~ 366 (1111)
..|--+ .| ..++++-++|||+.+|+..|.
T Consensus 113 ~~p~~~---------------------~~------~~~~~S~l~VPI~~~g~viGV 141 (195)
T 1vhm_A 113 VFDGHI---------------------AC------DAASNSEIVLPLVVKNQIIGV 141 (195)
T ss_dssp TCTTCC---------------------CS------CCCCSEEEEEEEEETTEEEEE
T ss_pred cCcchh---------------------hc------CCCccEEEEEeEeECCEEEEE
Confidence 654221 00 115799999999998655553
No 213
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=90.09 E-value=0.21 Score=60.23 Aligned_cols=50 Identities=16% Similarity=0.209 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhhcC---------C------CCCceEEEEEEEccccCCCCceeEEEEEEEeeCCCCCChhhhhhcc
Q 037299 995 QVLADFLLNMVRYS---------P------SAEGWVEIHVRPTLKQSSEGQTIVHNEFRMVCPGEGLPPELVQDMF 1055 (1111)
Q Consensus 995 qVl~nLl~NAik~t---------~------~~~g~I~I~v~~~~~~~~~~~~~~~v~i~V~DnG~GIp~e~~~~iF 1055 (1111)
.+|.+|+.||+++. . .....|.|.+..... .|+|.|||+||+.+++..-|
T Consensus 30 ifLrELIsNA~DA~~k~r~~~l~~~~~~~~a~~~~I~I~~d~~~~-----------~I~I~DnGiGMt~edl~~~l 94 (624)
T 2ioq_A 30 IFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKR-----------TLTISDNGVGMTRDEVIDHL 94 (624)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEEETTTT-----------EEEEEECSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhHHhhccCcccccCCCCcEEEEEEeCCCc-----------EEEEEECCCCCCHHHHHHHH
Confidence 67899999999985 1 112356655432211 57888999999999876544
No 214
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=88.00 E-value=0.67 Score=59.91 Aligned_cols=73 Identities=14% Similarity=0.364 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCC--CceEEEEEEEccccCCCCceeEEEEEEEeeCCCCCChhhhhh--------ccCC---
Q 037299 991 ARIQQVLADFLLNMVRYSPSA--EGWVEIHVRPTLKQSSEGQTIVHNEFRMVCPGEGLPPELVQD--------MFHS--- 1057 (1111)
Q Consensus 991 ~~L~qVl~nLl~NAik~t~~~--~g~I~I~v~~~~~~~~~~~~~~~v~i~V~DnG~GIp~e~~~~--------iFep--- 1057 (1111)
.-|..++.+.|.||++-.-.. -..|.|++...++ .|+|.|||.|||-+..++ +|..
T Consensus 58 ~GL~hl~~EildNsiDea~ag~~~~~I~V~i~~~d~-----------sisV~DnGRGIPvd~h~~~~~~~~Evv~t~LhA 126 (1177)
T 4gfh_A 58 PGLFKIFDEILVNAADNKVRDPSMKRIDVNIHAEEH-----------TIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLT 126 (1177)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTT-----------EEEEEECSSCCCCSBCTTTCSBHHHHHHHSSSE
T ss_pred ceeeeEeeEEEEChHhHHhhCCCCCeEEEEEECCCC-----------EEEEEecCCcccccccCCCCCEeeeeecccccc
Confidence 378899999999999842221 1368877765433 488999999999875432 3322
Q ss_pred ---C----CCC-CC-ccchHHHHHHH
Q 037299 1058 ---S----RWM-TQ-EGLGLSMCRKI 1074 (1111)
Q Consensus 1058 ---f----~~~-~G-~GLGL~i~r~i 1074 (1111)
| ++. +| .|.|.+.|-.+
T Consensus 127 GgKFd~~~ykvSGGLHGVG~svVNAL 152 (1177)
T 4gfh_A 127 SSNYDDDEKKVTGGRNGYGAKLCNIF 152 (1177)
T ss_dssp ESCCCCSSCCCCSCCSSCHHHHHHHT
T ss_pred ccCcCCCCCeEeccCCChhhhHHhhc
Confidence 2 222 24 39999988554
No 215
>4dah_A Sporulation kinase D; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology, PAS-like fold; 2.03A {Bacillus subtilis} PDB: 4dbj_A 4dbi_A 4dak_A 3fos_A
Probab=84.81 E-value=8.2 Score=39.35 Aligned_cols=126 Identities=7% Similarity=0.027 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHhcCC--cEEEEcCCccEEeecHHHHHHcCCChhhhcCCcccccccchhhHHHHHHHHHHHHcCCCccc
Q 037299 599 SSVAREMVRLIETATA--PIFAVDVHGCVNGWNAKVAELTGLSVEEAMGKSLVHDLVYKEYEEIVDNLLHHALKGEEDKN 676 (1111)
Q Consensus 599 ~~~~~~l~~lie~~~~--~I~~~D~dG~I~~~N~a~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~ 676 (1111)
+.....+..+.+..+. .++++|.+|+++..+.. ...+ ....+++.+.. ++..+....
T Consensus 54 ~~~~~~L~~~~~~~~~~~~i~i~d~~G~~~~~~~~----------~~~~-------~~~~~r~~f~~----a~~~~~~~i 112 (217)
T 4dah_A 54 KKMQSILEKTFDSEPRFSGLYFLNAKGDVTASTTE----------LKTK-------VNLADRSFFIK----AKETKKTVI 112 (217)
T ss_dssp HHHHHHHHHHHTTCTTEEEEEEEETTCBEEEESSC----------CSSC-------CBCTTSHHHHH----HHHHCSCEE
T ss_pred HHHHHHHHHHHhcCCcccEEEEECCCCcEEEecCC----------CCCC-------CCcchhHHHHH----HHhcCCcEE
Confidence 3445556677766655 68999999999876530 0011 11223444444 333232211
Q ss_pred eEEEEEEeccccCCcEEEEEEEeEeeccCCCCEEEEEEEEEechhHHHHHHHHHhHHHHHHHHHhCCCCCCCCccccCCC
Q 037299 677 VEIKLRTFGAENRKKAVFVVVNACSSKDYTNNIVGVCFVGQDVTDQKLVMDKFIHIQGDYKAIVHSPNPLIPPIFASDEN 756 (1111)
Q Consensus 677 ~e~~l~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DITerK~ae~~L~~se~~l~~i~~~~~~l~~~I~v~D~~ 756 (1111)
.+. +. ....|. ++..-+.|+++.+|++.|++++..|+......-..+. ... -++++|.+
T Consensus 113 s~~-~~---~~~~g~--~~i~ia~pi~~~~g~~~Gvl~~~i~l~~l~~~~~~~~------------~gg---~~~l~d~~ 171 (217)
T 4dah_A 113 SDS-YS---SRITGQ--PIFTICVPVLDSKRNVTDYLVAAIQIDYLKNLINLLS------------PDV---YIEVVNQD 171 (217)
T ss_dssp CCC-EE---CTTTCS--EEEEEEEEEECTTSCEEEEEEEEEEHHHHHHHHHHHC------------TTS---CEEEEETT
T ss_pred ece-EE---cCCCCC--EEEEEEEEEECCCCCEEEEEEEEEcHHHHHHHHHhcC------------CCc---EEEEEcCC
Confidence 111 11 112344 6677788999999999999999888776543322211 111 58999999
Q ss_pred Cccccchhhh
Q 037299 757 TCCSEWNTAM 766 (1111)
Q Consensus 757 g~ii~~N~a~ 766 (1111)
|+++......
T Consensus 172 G~ii~~~~~~ 181 (217)
T 4dah_A 172 GKMIFASGQA 181 (217)
T ss_dssp SCEEEEESCG
T ss_pred CCEEEeCCCC
Confidence 9988775543
No 216
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=84.68 E-value=0.18 Score=64.20 Aligned_cols=110 Identities=5% Similarity=-0.013 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHHhhCCCeEEEEeecCCCCcEEEEEecCCC---------CCCccCCCCCCCCchHHHHHHHHhCCe
Q 037299 233 GDIKLLCDTVVESVRQLTGYDRVMVYRFHEDEHGEVVAESKRPD---------LEPYFGLHYPATDIPQASRFLFKQNRV 303 (1111)
Q Consensus 233 ~~~~~l~~~~~~~vr~~~g~DRVmiY~F~~d~~G~VvaE~~~~~---------~~~~lg~~~pa~dip~~ar~ly~~n~~ 303 (1111)
.+++++++.+++.+++++|+||+.||-+++++ ++.++.+.... ..+.-+.++|... .-+...+..+..
T Consensus 348 ~dl~~ll~~I~~~a~~ll~a~~~~V~L~d~~~-~~l~a~a~~~~s~~~~~~~~~~~~~~~~~p~~~--gi~g~v~~~g~~ 424 (878)
T 3bjc_A 348 QSLEVILKKIAATIISFMQVQKCTIFIVDEDC-SDSFSSVFHMECEELEKSSDTLTREHDANKINY--MYAQYVKNTMEP 424 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccHHHHHHHHHHHHHHHhCcceeEEEEEcCcc-cchhHHHhhccccccccccccccccccccchhh--hHHHHHhhcCCe
Confidence 48999999999999999999999999999864 34555443211 1111234444321 112334445555
Q ss_pred eEeeccCCCcceeecCCCCCCcccccCccccCCChhHHHHHHh---cCcceEEEEEEEEc--CCCcccc
Q 037299 304 RMIVDCHATPLCVIQDEGLMQPLCLVGSTLRAPHGCHAQYMAN---MGSIASLALAVIIN--GNDEEAV 367 (1111)
Q Consensus 304 r~i~d~~~~~~~~~~~~~~~~~ldls~~~lRsvsp~h~~yl~n---mgv~asl~~~i~~~--~~~~~~~ 367 (1111)
-.|+|+...|-- +.+..-... .++++-|++||+.+ |+.+|..
T Consensus 425 v~i~D~~~d~r~----------------------~~~~~~~~g~~~~~~rS~L~vPL~~~~~g~viGVL 471 (878)
T 3bjc_A 425 LNIPDVSKDKRF----------------------PWTTENTGNVNQQCIRSLLCTPIKNGKKNKVIGVC 471 (878)
T ss_dssp ---------------------------------------------------------------------
T ss_pred eeecCccccccc----------------------ccccccccCccccccceEEEEEEecCCCCcEEEEE
Confidence 556665443311 111111222 66899999999986 6777754
No 217
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=84.41 E-value=0.3 Score=51.53 Aligned_cols=20 Identities=10% Similarity=0.192 Sum_probs=17.1
Q ss_pred EEEEeeCCCCCChhhhhhcc
Q 037299 1036 EFRMVCPGEGLPPELVQDMF 1055 (1111)
Q Consensus 1036 ~i~V~DnG~GIp~e~~~~iF 1055 (1111)
.|+|.|||+||+.+.+..-+
T Consensus 131 tLtI~DNGiGMTkeeL~~~L 150 (272)
T 3ied_A 131 TLTITDNGIGMDKSELINNL 150 (272)
T ss_dssp EEEEEECSCCCCHHHHHHHT
T ss_pred EEEEEeCCCCCCHHHHHHHH
Confidence 58889999999999887655
No 218
>3ksh_A Putative uncharacterized protein; FRMSR, free-Met-R-SO, oxidoreductase; 1.50A {Staphylococcus aureus} SCOP: d.110.2.0 PDB: 3ksf_A 3ksi_A 3ksg_A*
Probab=83.98 E-value=9.6 Score=37.38 Aligned_cols=114 Identities=11% Similarity=0.160 Sum_probs=74.0
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhC-CCeEEEEeecCCCCcEEEEEecCCCCCCccCCCCCCCCchHHHH
Q 037299 217 QKLAVRAISQLQSLPGGDIKLLCDTVVESVRQLTG-YDRVMVYRFHEDEHGEVVAESKRPDLEPYFGLHYPATDIPQASR 295 (1111)
Q Consensus 217 ~~~~~~~i~~l~~~~~~~~~~l~~~~~~~vr~~~g-~DRVmiY~F~~d~~G~VvaE~~~~~~~~~lg~~~pa~dip~~ar 295 (1111)
|+.+...+.+|=+. ..|+...++.++..+++.++ +|++-+|-+++ ++.+..+-... +. ..+||-.. --.-
T Consensus 15 ~~~ll~~l~~ll~~-~~dl~~~L~~v~~ll~~~l~~~~~~gfYL~~~---~~L~l~~~~G~-~a--~~ri~~Ge--Gv~G 85 (160)
T 3ksh_A 15 YTLLKKQAASLIED-EHHMIAILSNMSALLNDNLDQINWVGFYLLEQ---NELILGPFQGH-PA--CVHIPIGK--GVCG 85 (160)
T ss_dssp HHHHHHHHHHTTTT-CCCHHHHHHHHHHHHHHHCSSCSEEEEEEEET---TEEEEEEEEES-CC--CSEEETTS--HHHH
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHcccCCEEEEEEEEC---CEEEEEeccCC-cc--cEEeeCCC--CHHH
Confidence 44444445444332 46999999999999999997 99999999974 46554433221 11 23333221 2345
Q ss_pred HHHHhCCeeEeeccCCCcceeecCCCCCCcccccCccccCCChhHHHHHHhcCcceEEEEEEEEcCCCccc
Q 037299 296 FLFKQNRVRMIVDCHATPLCVIQDEGLMQPLCLVGSTLRAPHGCHAQYMANMGSIASLALAVIINGNDEEA 366 (1111)
Q Consensus 296 ~ly~~n~~r~i~d~~~~~~~~~~~~~~~~~ldls~~~lRsvsp~h~~yl~nmgv~asl~~~i~~~~~~~~~ 366 (1111)
.-+..++.-+|+|+...|--+ .| ..++++-+++||+.+|+..|.
T Consensus 86 ~aa~~~~~i~V~Dv~~~p~~i---------------------~~------~~~~~Sei~VPI~~~g~viGV 129 (160)
T 3ksh_A 86 TAVSERRTQVVADVHQFKGHI---------------------AC------DANSKSEIVVPIFKDDKIIGV 129 (160)
T ss_dssp HHHHHTSCEEESCGGGSTTCC---------------------GG------GTTCSEEEEEEEEETTEEEEE
T ss_pred HHHhhCCEEEECCcccCcccc---------------------cc------CcccCceEEEEEEECCEEEEE
Confidence 667888898999997665321 11 135789999999998655553
No 219
>3rfb_A Putative uncharacterized protein; FRMSR, GAF, oxidoreductase, SME; HET: SME; 2.30A {Streptococcus pneumoniae}
Probab=81.72 E-value=12 Score=37.22 Aligned_cols=114 Identities=9% Similarity=0.010 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhC-CCeEEEEeecCCCCcEEEEEecCCCCCCccCCCCCCCCchHHH
Q 037299 216 SQKLAVRAISQLQSLPGGDIKLLCDTVVESVRQLTG-YDRVMVYRFHEDEHGEVVAESKRPDLEPYFGLHYPATDIPQAS 294 (1111)
Q Consensus 216 ~~~~~~~~i~~l~~~~~~~~~~l~~~~~~~vr~~~g-~DRVmiY~F~~d~~G~VvaE~~~~~~~~~lg~~~pa~dip~~a 294 (1111)
.|..+...+.+|=+. ..|+...++.++..+++.++ +|++-+|-+++ ++.+..+-... +. ..+||-.. --.
T Consensus 15 ~~~~ll~~l~~ll~~-~~dl~~~L~nv~~lL~~~l~~~~~~gfYL~~~---~~L~l~a~~G~-~a--~~ri~~Ge--Gv~ 85 (171)
T 3rfb_A 15 RYQMLNEELSFLLEG-ETNVLANLSNASALIKSRFPNTVFAGFYLFDG---KELVLGPFQGG-VS--CIRIALGK--GVC 85 (171)
T ss_dssp HHHHHHHHHHHHHTT-CCBHHHHHHHHHHHHHHHCTTEEEEEEEEECS---SEEEEEEEESS-SC--CCEEETTS--HHH
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHccCCCEEEEEEEEC---CEEEEEeccCC-cc--ceEeeCCc--CHH
Confidence 455444445554332 46999999999999999997 99999999875 46554432221 11 22333211 234
Q ss_pred HHHHHhCCeeEeeccCCCcceeecCCCCCCcccccCccccCCChhHHHHHHhcCcceEEEEEEEEcCCCcc
Q 037299 295 RFLFKQNRVRMIVDCHATPLCVIQDEGLMQPLCLVGSTLRAPHGCHAQYMANMGSIASLALAVIINGNDEE 365 (1111)
Q Consensus 295 r~ly~~n~~r~i~d~~~~~~~~~~~~~~~~~ldls~~~lRsvsp~h~~yl~nmgv~asl~~~i~~~~~~~~ 365 (1111)
-.-+..++.-+|+|+...|--+- | ..++++-++|||+.+|+..|
T Consensus 86 G~va~tg~~i~V~Dv~~~p~~i~---------------------~------~~~~~Sei~VPI~~~g~viG 129 (171)
T 3rfb_A 86 GEAAHFQETVIVGDVTTYLNYIS---------------------C------DSLAKSEIVVPMMKNGQLLG 129 (171)
T ss_dssp HHHHHTTSCEEESCTTSCSSCCC---------------------S------CTTCCEEEEEEEEETTEEEE
T ss_pred HHHHhhCCEEEECCcccCccccc---------------------c------CcccCceEEEEEEECCEEEE
Confidence 66778888999999987663321 1 12467889999999854444
No 220
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9
Probab=80.82 E-value=2.8 Score=46.55 Aligned_cols=48 Identities=10% Similarity=0.116 Sum_probs=40.1
Q ss_pred EEEEcC-CccEEeecHHHHHHcCCChhhhcCCcccccccchhhHHHHHHH
Q 037299 616 IFAVDV-HGCVNGWNAKVAELTGLSVEEAMGKSLVHDLVYKEYEEIVDNL 664 (1111)
Q Consensus 616 I~~~D~-dG~I~~~N~a~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~ 664 (1111)
++++|. +++|+.+|..+++++|+++++++|+++. ++++++....+...
T Consensus 45 Ll~~~~~~~~i~~~S~N~~~~lg~~~~~llG~~l~-~ll~~~~~~~l~~~ 93 (337)
T 2ool_A 45 LFVVSETDLRIASVSANVEDLLRQPPASLLNVPIA-HYLTAASAARLTHA 93 (337)
T ss_dssp EEEECTTTCBEEEEETTHHHHHSSCGGGGTTCBGG-GGBCHHHHHHHHHH
T ss_pred EEEEECCCCEEEEEehhHHHHHCcCHHHHcCCCHH-HHcCHHHHHHHHHH
Confidence 345665 5899999999999999999999999998 88988777655444
No 221
>3e4o_A C4-dicarboxylate transport sensor protein DCTB; PAS domain, N-TERM helical dimerization domain, transferase; 2.30A {Sinorhizobium meliloti} PDB: 3e4p_A 3e4q_A 2zbb_A
Probab=78.13 E-value=33 Score=37.33 Aligned_cols=120 Identities=12% Similarity=0.153 Sum_probs=67.2
Q ss_pred HHHHHHHHHhc-CCcEEEEcCCccEEeecHHHHHHcCCChhhhcCCcccccccchhhHHHHHHHHHHHHcCCCccceEEE
Q 037299 602 AREMVRLIETA-TAPIFAVDVHGCVNGWNAKVAELTGLSVEEAMGKSLVHDLVYKEYEEIVDNLLHHALKGEEDKNVEIK 680 (1111)
Q Consensus 602 ~~~l~~lie~~-~~~I~~~D~dG~I~~~N~a~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~ 680 (1111)
.+.+..+.+.. -..|+++|.+|+++..+.. -.+...+|.+. .+++. +.++++++... .+.
T Consensus 101 ~~~L~~~~~~~~~~~i~v~d~~G~viass~~------~~p~~~~g~d~-------~~R~y----f~~Al~g~~~~--~~~ 161 (305)
T 3e4o_A 101 NRKLEALATSAEAAVIYLIDRSGVAVAASNW------QEPTSFVGNDY-------AFRDY----FRLAVRDGMAE--HFA 161 (305)
T ss_dssp HHHHHHHHHHSSCSEEEEEETTSBEEEETTT------TSTTCCTTCBC-------TTSHH----HHHHHHHSEEE--EEE
T ss_pred HHHHHHHHhccCccEEEEECCCCCEEEeCCC------cCcccccCCCc-------cccHH----HHHHHhcCCcE--EEE
Confidence 34444444433 3479999999999876431 01111233322 23333 34444443321 111
Q ss_pred EEEeccccCCcEEEEEEEeEeeccCCCCEEEEEEEEEechhHHHHHHHHHhHHHHHHHHHhCCCCCCCCccccCCCCccc
Q 037299 681 LRTFGAENRKKAVFVVVNACSSKDYTNNIVGVCFVGQDVTDQKLVMDKFIHIQGDYKAIVHSPNPLIPPIFASDENTCCS 760 (1111)
Q Consensus 681 l~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DITerK~ae~~L~~se~~l~~i~~~~~~l~~~I~v~D~~g~ii 760 (1111)
+ ....|. ++...+.|+++ +|+++|++++..|+....+. +. . ... .++++|.+|.++
T Consensus 162 ~----~~~tg~--~~i~~a~PV~~-~G~viGVv~v~i~l~~l~~~---~~----------~-~~g---~~~l~D~~G~ii 217 (305)
T 3e4o_A 162 M----GTVSKR--PGLYISRRVDG-PGGPLGVIVAKLEFDGVEAD---WQ----------A-SGK---PAYVTDRRGIVL 217 (305)
T ss_dssp E----CTTTCC--EEEEEEEEEEE-TTEEEEEEEEEECCHHHHHH---HH----------H-HTS---CEEEECTTCBEE
T ss_pred E----ecCCCC--EEEEEEEEEcc-CCeEEEEEEEEEcHHHHHHH---Hh----------c-CCc---eEEEEcCCCeEE
Confidence 1 122344 34556788886 59999999999998854432 11 1 111 589999999988
Q ss_pred cchh
Q 037299 761 EWNT 764 (1111)
Q Consensus 761 ~~N~ 764 (1111)
..+.
T Consensus 218 ~~~~ 221 (305)
T 3e4o_A 218 ITSL 221 (305)
T ss_dssp EESS
T ss_pred EeCC
Confidence 6654
No 222
>1f5m_A GAF; CGMP binding, signaling protein; 1.90A {Saccharomyces cerevisiae} SCOP: d.110.2.1 PDB: 3ko6_A*
Probab=76.89 E-value=11 Score=37.53 Aligned_cols=113 Identities=5% Similarity=0.019 Sum_probs=73.3
Q ss_pred CCCHHHHHHHHHHHHHHhh-----CCCeEEEEeecCCCCcEEEEEecCCCCCCccCCCCCCCCchHHHHHHHHhCCeeEe
Q 037299 232 GGDIKLLCDTVVESVRQLT-----GYDRVMVYRFHEDEHGEVVAESKRPDLEPYFGLHYPATDIPQASRFLFKQNRVRMI 306 (1111)
Q Consensus 232 ~~~~~~l~~~~~~~vr~~~-----g~DRVmiY~F~~d~~G~VvaE~~~~~~~~~lg~~~pa~dip~~ar~ly~~n~~r~i 306 (1111)
..++.++++.+++.+.+.+ +++++.+|-++++..++.+.-....... ..+||-..= -.-.-+..++.-+|
T Consensus 39 ~~dl~~~L~~v~~~l~~~l~~~~~~~~~~~~yl~d~~~~~~L~l~~~~g~~~---~~~i~~g~G--i~G~aa~~g~~v~v 113 (180)
T 1f5m_A 39 QVNWVCNLSNASSLIWHAYKSLAVDINWAGFYVTQASEENTLILGPFQGKVA---CQMIQFGKG--VCGTAASTKETQIV 113 (180)
T ss_dssp CCBHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECSSSSCEEEEEEEEESCC---CSEEETTSH--HHHHHHHHTSCEEE
T ss_pred CccHHHHHHHHHHHHHHHHhhccCCccEEEEEEEecCCCCeEEEeecCCCcc---ceeecCCCc--chhhhhhcCCEEEe
Confidence 3589999999999999998 9999999999987645665422211111 345543321 23345566677788
Q ss_pred eccCCCc--------------ceeec-CCCCCCcccccCccccCCChhHHHHHHhcCc
Q 037299 307 VDCHATP--------------LCVIQ-DEGLMQPLCLVGSTLRAPHGCHAQYMANMGS 349 (1111)
Q Consensus 307 ~d~~~~~--------------~~~~~-~~~~~~~ldls~~~lRsvsp~h~~yl~nmgv 349 (1111)
+|+...| |||+- +...-.-|++-....+..++-++++|+.+..
T Consensus 114 ~Dv~~dp~~~~~~~~~~S~l~vPi~~~~g~viGVL~l~s~~~~~F~~~d~~~L~~la~ 171 (180)
T 1f5m_A 114 PDVNKYPGHIACDGETKSEIVVPIISNDGKTLGVIDIDCLDYEGFDHVDKEFLEKLAK 171 (180)
T ss_dssp SCGGGSTTCCCSSTTCCEEEEEEEECTTSCEEEEEEEEESSTTCCCHHHHHHHHHHHH
T ss_pred CCcccCccccccCcccceEEEEEEEcCCCeEEEEEEeccCCCCCcCHHHHHHHHHHHH
Confidence 9988755 34442 2222344666555567888888888877643
No 223
>3lif_A Putative diguanylate cyclase (ggdef) with PAS/PAC; PDC fold, signaling protein; HET: CIT; 2.70A {Rhodopseudomonas palustris}
Probab=76.13 E-value=27 Score=36.23 Aligned_cols=124 Identities=7% Similarity=-0.031 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHhcCC--cEEEEcCCccEEeecHHHHHHcCCChhhhcCCcccccccchhhHHHHHHHHHHHHcC--CCcc
Q 037299 600 SVAREMVRLIETATA--PIFAVDVHGCVNGWNAKVAELTGLSVEEAMGKSLVHDLVYKEYEEIVDNLLHHALKG--EEDK 675 (1111)
Q Consensus 600 ~~~~~l~~lie~~~~--~I~~~D~dG~I~~~N~a~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~--~~~~ 675 (1111)
.....+..+.+..+. .++++|.+|+ +..+.. .. ..+. ...+++. +..++.+ +...
T Consensus 55 ~~~~~L~~~~~~~~~~~~i~i~d~~G~-~~~s~~------~~---~~~~-------~~~~r~~----f~~a~~~~~~~~~ 113 (254)
T 3lif_A 55 VFNERLRALADNLPQLSDVAILDADGQ-LTYASV------KP---VPAL-------DNSDRSY----FRYHRANDDHTLL 113 (254)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEECTTSB-EEEESS------SS---EECC-------BCTTSHH----HHHHHHCCCCCCE
T ss_pred HHHHHHHHHHhcCCccceEEEECCCCC-EecCCC------CC---CCCC-------CcccHHH----HHHHHhCCCCCeE
Confidence 345566777777765 6899999999 544321 00 0111 1223333 3444442 2221
Q ss_pred ceEEEEEEeccccCCcEEEEEEEeEeeccCCCCEEEEEEEEEechhHHHHHHHHHhHHHHHHHHHhCCCCCCC-CccccC
Q 037299 676 NVEIKLRTFGAENRKKAVFVVVNACSSKDYTNNIVGVCFVGQDVTDQKLVMDKFIHIQGDYKAIVHSPNPLIP-PIFASD 754 (1111)
Q Consensus 676 ~~e~~l~~~~~~~dG~~~~v~v~~~pi~d~~G~v~gvv~v~~DITerK~ae~~L~~se~~l~~i~~~~~~l~~-~I~v~D 754 (1111)
+.-.+. ....| .|+..-+.|+++.+|++.|++++..|+... ..++........ -++++|
T Consensus 114 -is~p~~---~~~~g--~~~i~~~~pi~~~~g~~~Gvl~~~i~l~~l--------------~~~~~~~~~~~~g~~~l~d 173 (254)
T 3lif_A 114 -ITGPIQ---SRTSG--VWVFVVSRRLETTDGKFFGVVVATIESEYF--------------STFYKTFDLGPGGSISLLH 173 (254)
T ss_dssp -EEEEEE---CTTTC--CEEEEEEEEEECTTCCEEEEEEEEECHHHH--------------HHHHTTSCCCTTCEEEEEE
T ss_pred -ECCcee---cCCCC--cEEEEEEeeeeCCCCCEeEEEEEEECHHHH--------------HHHHHhcCcCCCcEEEEEe
Confidence 111111 11223 356677889999999999999998886432 223333322111 478899
Q ss_pred CCCccccchh
Q 037299 755 ENTCCSEWNT 764 (1111)
Q Consensus 755 ~~g~ii~~N~ 764 (1111)
.+|.++.-.+
T Consensus 174 ~~G~ii~~~p 183 (254)
T 3lif_A 174 SDGRLLIQWP 183 (254)
T ss_dssp TTSBEEEEET
T ss_pred CCCcEEEECC
Confidence 9999987644
No 224
>1p0z_A Sensor kinase CITA; transferase; HET: FLC MO7; 1.60A {Klebsiella pneumoniae} SCOP: d.110.6.1 PDB: 2v9a_A 2j80_A*
Probab=74.80 E-value=7.2 Score=36.62 Aligned_cols=77 Identities=16% Similarity=0.139 Sum_probs=46.2
Q ss_pred CcEEEEcCCccEEeecHHHHHHcCCChhhhcCCcccccccchhhHHHHHHHHHHHHcCCCccceEEEEEEeccccCCcEE
Q 037299 614 APIFAVDVHGCVNGWNAKVAELTGLSVEEAMGKSLVHDLVYKEYEEIVDNLLHHALKGEEDKNVEIKLRTFGAENRKKAV 693 (1111)
Q Consensus 614 ~~I~~~D~dG~I~~~N~a~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~l~~~~~~~dG~~~ 693 (1111)
+.|+++|.+|..+.... .+.+|+++. . .+ .+..+++|+... ... .|...
T Consensus 51 ~~i~v~d~~G~~~a~~~----------~~~iG~~~~-~--~~--------~~~~al~G~~~~----~~~------~g~~g 99 (131)
T 1p0z_A 51 TYITVGDASGQRLYHVN----------PDEIGKSME-G--GD--------SDEALINAKSYV----SVR------KGSLG 99 (131)
T ss_dssp SEEEEEETTSBEEECSS----------GGGTTSBCC-S--SC--------CHHHHHHCCCEE----EEE------EETTE
T ss_pred CEEEEEcCCCcEEEecC----------hhhCCCccc-C--CC--------cHHHHhCCCeEE----EEE------Eccce
Confidence 47889999998876532 234676543 0 11 223445555311 111 12222
Q ss_pred EEEEEeEeeccCCCCEEEEEEEEEechh
Q 037299 694 FVVVNACSSKDYTNNIVGVCFVGQDVTD 721 (1111)
Q Consensus 694 ~v~v~~~pi~d~~G~v~gvv~v~~DITe 721 (1111)
.......|+++.+|+++|++.+..++..
T Consensus 100 ~~~~~~~PV~~~~g~viGvv~vg~~l~~ 127 (131)
T 1p0z_A 100 SSLRGKSPIQDATGKVIGIVSVGYTIEQ 127 (131)
T ss_dssp EEEEEEEEEECTTCCEEEEEEEEEEGGG
T ss_pred eeEEEEEeEECCCCCEEEEEEEEEEhHH
Confidence 3334445999989999999999988764
No 225
>3by8_A Sensor protein DCUS; histidine kinase sensor domain, inner membrane, membrane, phosphoprotein, transferase, transmembrane; 1.45A {Escherichia coli} SCOP: d.110.6.1 PDB: 1ojg_A
Probab=58.59 E-value=13 Score=35.36 Aligned_cols=79 Identities=15% Similarity=0.189 Sum_probs=46.3
Q ss_pred CcEEEEcCCccEEeecHHHHHHcCCChhhhcCCcccccccchhhHHHHHHHHHHHHcCCCccceEEEEEEeccccCCcEE
Q 037299 614 APIFAVDVHGCVNGWNAKVAELTGLSVEEAMGKSLVHDLVYKEYEEIVDNLLHHALKGEEDKNVEIKLRTFGAENRKKAV 693 (1111)
Q Consensus 614 ~~I~~~D~dG~I~~~N~a~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~l~~~~~~~dG~~~ 693 (1111)
+.|+++|.+|..++... .+.+|+++. .+ .+..+++|+.. +... ...++
T Consensus 57 ~~i~v~d~~G~~~~~~~----------~~~iG~~~~----~~--------~~~~al~G~~~----~~~~----~~~~g-- 104 (142)
T 3by8_A 57 LFIVVTDMQSLRYSHPE----------AQRIGQPFK----GD--------DILKALNGEEN----VAIN----RGFLA-- 104 (142)
T ss_dssp SEEEEEETTCBBSCCSS----------GGGTTSBCC----CG--------GGTGGGGTCCE----EEEE----CSSSS--
T ss_pred cEEEEECCCCcEEECCC----------hHHCCCcCC----CC--------CHHHHhCCCeE----EEEe----cCccE--
Confidence 47899999998766532 345677553 11 12233454421 1111 11222
Q ss_pred EEEEEeEeeccCCCCEEEEEEEEEechhHHH
Q 037299 694 FVVVNACSSKDYTNNIVGVCFVGQDVTDQKL 724 (1111)
Q Consensus 694 ~v~v~~~pi~d~~G~v~gvv~v~~DITerK~ 724 (1111)
.......|+++.+|+++|++.+..++.....
T Consensus 105 ~~~~~~~PV~~~~g~viGvv~vg~~~~~~~~ 135 (142)
T 3by8_A 105 QALRVFTPIYDENHKQIGVVAIGLELSRVTQ 135 (142)
T ss_dssp CEEEEEEEEECTTSCEEEEEEEEEEHHHHHH
T ss_pred EEEEEEEeEEcCCCCEEEEEEEeEEHHHHHH
Confidence 2233344999888999999999999876544
No 226
>4ew7_A Conjugative transfer: regulation; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology; 1.67A {Salmonella enterica subsp}
Probab=58.31 E-value=1e+02 Score=27.38 Aligned_cols=43 Identities=14% Similarity=0.121 Sum_probs=35.4
Q ss_pred HHHHHHhcCCcEEEEcCCccEEeecHHHHHHcCCChhhhcCCc
Q 037299 605 MVRLIETATAPIFAVDVHGCVNGWNAKVAELTGLSVEEAMGKS 647 (1111)
Q Consensus 605 l~~lie~~~~~I~~~D~dG~I~~~N~a~~~l~G~~~eeliG~~ 647 (1111)
.+.+..++|+++.+.+.+..|+|.|.++.+||-.....+-|.+
T Consensus 22 iq~iY~nSPVpVCVRNq~RkilYaN~aF~elF~Ked~~~sg~S 64 (127)
T 4ew7_A 22 IQDIYKNSPVPVCVRNQSRKIIYANGAFIELFSKEDQPLSGDS 64 (127)
T ss_dssp HHHHHTTCSSCEEEECTTSCEEEECHHHHHHTTSCCCGGGCTT
T ss_pred HHhhhcCCCccEEEecccceEEEecchHHHHhhcccCcccCcc
Confidence 4578899999999999999999999999999765544444444
No 227
>3lid_A Putative sensory BOX/ggdef family protein; PDC fold, signaling protein; 1.76A {Vibrio parahaemolyticus} PDB: 3lie_A 2p7j_A*
Probab=53.88 E-value=88 Score=33.56 Aligned_cols=135 Identities=12% Similarity=-0.043 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHhcCC--cEEEEcCCccEE-eecHHHHHHcCCChhhhcCCcccccccchhhHHHHHHHHHHHHcC--C
Q 037299 598 LSSVAREMVRLIETATA--PIFAVDVHGCVN-GWNAKVAELTGLSVEEAMGKSLVHDLVYKEYEEIVDNLLHHALKG--E 672 (1111)
Q Consensus 598 L~~~~~~l~~lie~~~~--~I~~~D~dG~I~-~~N~a~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~--~ 672 (1111)
....++.|..+.++.+. .|.++|.+|+.+ .+|......+-.+.. .+....+++.+.. +++. +
T Consensus 62 ~~~l~~~~~~~~~~~~~~~~i~lid~~G~~i~~~~~~~~~~~~~p~~---------~l~n~~~R~yf~~----a~~~~~~ 128 (295)
T 3lid_A 62 LTILENMWSSVARNQKLYKQIRFLDTSGTEKVRIKYDFKTSIAGPSL---------ILRDKSAREYFKY----AQSLDNE 128 (295)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEEETTSBEEEEEEEETTTTEEEECS---------CCCBCTTSHHHHH----HHHSCTT
T ss_pred HHHHHHHHHHHHhcCccccEEEEECCCCCEEEEEEccCCceeEcCcc---------ccccchhhHHHHH----HhcCCCC
Confidence 45566678888877665 588999999755 344221111100111 1222334444433 3432 2
Q ss_pred CccceEEEEEEeccccCC----cEEEEEEEeEeeccCCCCEEEEEEEEEechhHHHHHHHHHhHHHHHHHHHhCCCCCCC
Q 037299 673 EDKNVEIKLRTFGAENRK----KAVFVVVNACSSKDYTNNIVGVCFVGQDVTDQKLVMDKFIHIQGDYKAIVHSPNPLIP 748 (1111)
Q Consensus 673 ~~~~~e~~l~~~~~~~dG----~~~~v~v~~~pi~d~~G~v~gvv~v~~DITerK~ae~~L~~se~~l~~i~~~~~~l~~ 748 (1111)
..+...+.+.. .+| ...++..-+.|+. .+|++.|++++-.|+...... +. ..... ..
T Consensus 129 ~~~~s~~~~~~----~~g~~~~~~~p~i~~a~pV~-~~g~~~GVlv~~i~l~~l~~~----------~~---~~~~~-~~ 189 (295)
T 3lid_A 129 QISAWGIELER----DKGELVYPLSPSLRILMPIS-VNDVRQGYLVLNVDIEYLSSL----------LN---YSPVR-DF 189 (295)
T ss_dssp CCEECCCEECE----ETTEECSSCCEEEEEEEEEE-ETTEEEEEEEEEEEHHHHHHH----------HS---EETTT-TE
T ss_pred cEEEeCceecc----cCCcccCCCCCEEEEEEEEc-cCCeEEEEEEEEecHHHHHHH----------Hh---hcccC-CC
Confidence 22222222211 122 2245667778886 689999999998887553211 11 01110 11
Q ss_pred CccccCCCCccccchh
Q 037299 749 PIFASDENTCCSEWNT 764 (1111)
Q Consensus 749 ~I~v~D~~g~ii~~N~ 764 (1111)
.++++|.+|.++.-+.
T Consensus 190 ~~~l~d~~G~~l~~~~ 205 (295)
T 3lid_A 190 HIELVKHKGFYIASPD 205 (295)
T ss_dssp ECEEEETTSBEEECSC
T ss_pred cEEEEcCCCCEEecCC
Confidence 5899999999876543
No 228
>4ew7_A Conjugative transfer: regulation; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology; 1.67A {Salmonella enterica subsp}
Probab=47.22 E-value=1.5e+02 Score=26.28 Aligned_cols=93 Identities=14% Similarity=0.100 Sum_probs=51.0
Q ss_pred HHHHHhCCCCCCCCccccCCCCccccchhhhHHHhCCCccccccccccccccccccccCChhhHHHHHHHHHhhhCCCCc
Q 037299 736 YKAIVHSPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGDIIGKMLVGEVFGSCCRLKGPDALTKFMIALHNAFGGQDT 815 (1111)
Q Consensus 736 l~~i~~~~~~l~~~I~v~D~~g~ii~~N~a~~~l~G~~~eeliGk~l~~~v~~~~~~l~~~~~~~~~~~~l~~~~~~~~~ 815 (1111)
.+.+..++| .++++-+.+..+++.|.+|.++|-.+..-+-|.... .+ .-+..-...+.--+++..+..
T Consensus 22 iq~iY~nSP---VpVCVRNq~RkilYaN~aF~elF~Ked~~~sg~S~~--~~-------~vE~~LS~LELeCqsLGhG~a 89 (127)
T 4ew7_A 22 IQDIYKNSP---VPVCVRNQSRKIIYANGAFIELFSKEDQPLSGDSYN--RY-------GVEVFLSSLELECQSLGHGAA 89 (127)
T ss_dssp HHHHHTTCS---SCEEEECTTSCEEEECHHHHHHTTSCCCGGGCTTSS--HH-------HHHHHHHHHHHHHHHHCTTCE
T ss_pred HHhhhcCCC---ccEEEecccceEEEecchHHHHhhcccCcccCcccc--ee-------eehhhHHHHHHHHHhhcCCce
Confidence 445556664 489999999999999999999975443333332210 00 011111112222233333322
Q ss_pred ceeeeeeecCCCCEEEEEEEEeeeecCC
Q 037299 816 EKFPFPLFDRNGKYVQALLTANKRVNME 843 (1111)
Q Consensus 816 ~~~e~~~~~~dG~~~~v~~~~~pi~d~~ 843 (1111)
. .+.++-.|+...+.+......+.+
T Consensus 90 f---~r~Fn~~~e~yQIRmE~iSf~~~e 114 (127)
T 4ew7_A 90 F---CRRFNFHGEIYQIRMENISFDNNE 114 (127)
T ss_dssp E---EEEEEETTEEEEEEEEEEECTTCC
T ss_pred E---EEEeecCCceEEEEEEEeeecCCc
Confidence 2 244455677777777666655544
No 229
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris}
Probab=44.89 E-value=17 Score=39.88 Aligned_cols=48 Identities=21% Similarity=0.301 Sum_probs=40.4
Q ss_pred cEEEEcCCccEEeecHHHHHHcCCChhhhcCCcccccccchhhHHHHHH
Q 037299 615 PIFAVDVHGCVNGWNAKVAELTGLSVEEAMGKSLVHDLVYKEYEEIVDN 663 (1111)
Q Consensus 615 ~I~~~D~dG~I~~~N~a~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~ 663 (1111)
.++++|.+++|+.+...+.+++|.++++++|+++. +++.++....+..
T Consensus 31 ~Ll~~~~~~~I~~~S~N~~~~lg~~~~~~lG~~l~-~ll~~~~~~~l~~ 78 (327)
T 4e04_A 31 LLLALAADMTIVAGSDNLPELTGLAIGALIGRSAA-DVFDSETHNRLTI 78 (327)
T ss_dssp EEEEECTTCBEEEEETTHHHHHSCCHHHHTTCBHH-HHBCHHHHHHHHH
T ss_pred EEEEEcCCCeEEEEcccHHHHhCCChHhhcCCCHH-HHcCHHHHHHHHH
Confidence 35677888999999999999999999999999998 7887766665444
No 230
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A*
Probab=42.32 E-value=11 Score=44.32 Aligned_cols=38 Identities=11% Similarity=-0.001 Sum_probs=32.2
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHHHhhCCCeEEEEeec
Q 037299 222 RAISQLQSLPGGDIKLLCDTVVESVRQLTGYDRVMVYRFH 261 (1111)
Q Consensus 222 ~~i~~l~~~~~~~~~~l~~~~~~~vr~~~g~DRVmiY~F~ 261 (1111)
+.+.+|.+ +.++.+.+.+.+.++++++++|||.+|.++
T Consensus 324 ~l~~~l~~--~~~~~~~l~~~~~~l~~ll~adg~al~~~~ 361 (505)
T 3nhq_A 324 ALARRARD--ADDLFGALAHPDDGIAALIPCDGALVMLGG 361 (505)
T ss_dssp HHHHHHHH--HCCHHHHHHCTTTSHHHHTTCSEEEEEETT
T ss_pred HHHHHHhh--cCCHHHHHHHhhHHHHHHhCCCeEEEEECC
Confidence 44556666 558999999999999999999999999886
No 231
>3by8_A Sensor protein DCUS; histidine kinase sensor domain, inner membrane, membrane, phosphoprotein, transferase, transmembrane; 1.45A {Escherichia coli} SCOP: d.110.6.1 PDB: 1ojg_A
Probab=41.27 E-value=55 Score=30.86 Aligned_cols=27 Identities=15% Similarity=0.007 Sum_probs=20.9
Q ss_pred EEEEEeeeecCCCCEEEEEeeeecccH
Q 037299 832 ALLTANKRVNMEGQIVGAFCFLQIASP 858 (1111)
Q Consensus 832 v~~~~~pi~d~~G~v~g~v~~~~DITe 858 (1111)
......|+++.+|+++|++.+-.+...
T Consensus 106 ~~~~~~PV~~~~g~viGvv~vg~~~~~ 132 (142)
T 3by8_A 106 ALRVFTPIYDENHKQIGVVAIGLELSR 132 (142)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEEEHHH
T ss_pred EEEEEEeEEcCCCCEEEEEEEeEEHHH
Confidence 334445999888999999999888764
No 232
>1p0z_A Sensor kinase CITA; transferase; HET: FLC MO7; 1.60A {Klebsiella pneumoniae} SCOP: d.110.6.1 PDB: 2v9a_A 2j80_A*
Probab=40.93 E-value=48 Score=30.74 Aligned_cols=28 Identities=11% Similarity=0.112 Sum_probs=21.1
Q ss_pred EEEEEEEeeeecCCCCEEEEEeeeeccc
Q 037299 830 VQALLTANKRVNMEGQIVGAFCFLQIAS 857 (1111)
Q Consensus 830 ~~v~~~~~pi~d~~G~v~g~v~~~~DIT 857 (1111)
........|+++.+|+++|++.+-.++.
T Consensus 99 g~~~~~~~PV~~~~g~viGvv~vg~~l~ 126 (131)
T 1p0z_A 99 GSSLRGKSPIQDATGKVIGIVSVGYTIE 126 (131)
T ss_dssp EEEEEEEEEEECTTCCEEEEEEEEEEGG
T ss_pred eeeEEEEEeEECCCCCEEEEEEEEEEhH
Confidence 3444455599998999999999877654
No 233
>3c8c_A Methyl-accepting chemotaxis protein; structural genomics, unknown function, uncharacterized protein; 1.50A {Vibrio cholerae o1 biovar eltor str}
Probab=40.08 E-value=2.3e+02 Score=28.13 Aligned_cols=56 Identities=16% Similarity=0.217 Sum_probs=36.3
Q ss_pred EEEEEeEeeccCC-CCEEEEEEEEEechhHHHHHHHHHhHHHHHHHHHhCCCCCCC-CccccCCCCccccch
Q 037299 694 FVVVNACSSKDYT-NNIVGVCFVGQDVTDQKLVMDKFIHIQGDYKAIVHSPNPLIP-PIFASDENTCCSEWN 763 (1111)
Q Consensus 694 ~v~v~~~pi~d~~-G~v~gvv~v~~DITerK~ae~~L~~se~~l~~i~~~~~~l~~-~I~v~D~~g~ii~~N 763 (1111)
++..-+.|+++.+ |++.|++++..+.... ..++........ -++++|.+|.++.-+
T Consensus 118 ~~i~~~~pi~~~~~g~~~Gvl~~~i~~~~l--------------~~~~~~~~~~~~g~~~l~d~~G~ii~~~ 175 (240)
T 3c8c_A 118 ILVSVATPVKDSATGQFLGSIFYDVSLAEL--------------AELVNEVKLFDAGYVFIVSEDGTTIAHP 175 (240)
T ss_dssp EEEEEEEEEECTTTCCEEEEEEEEECHHHH--------------HHHHTCSCCTTSEEEEEEETTSBEEECS
T ss_pred EEEEEEEEEEECCCCeEEEEEEEEEEHHHH--------------HHHHHhcccCCceEEEEEcCCCcEEEeC
Confidence 5556678998866 9999999887775432 222333221111 378899999988654
No 234
>4dah_A Sporulation kinase D; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology, PAS-like fold; 2.03A {Bacillus subtilis} PDB: 4dbj_A 4dbi_A 4dak_A 3fos_A
Probab=39.63 E-value=52 Score=33.13 Aligned_cols=94 Identities=7% Similarity=-0.082 Sum_probs=52.6
Q ss_pred HHHHHHHHhCCCCCCCCccccCCCCccccchhhhHHHhCCCccccccccccccccccccccCChhhHHHHHHHHHhhhCC
Q 037299 733 QGDYKAIVHSPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGDIIGKMLVGEVFGSCCRLKGPDALTKFMIALHNAFGG 812 (1111)
Q Consensus 733 e~~l~~i~~~~~~l~~~I~v~D~~g~ii~~N~a~~~l~G~~~eeliGk~l~~~v~~~~~~l~~~~~~~~~~~~l~~~~~~ 812 (1111)
...++.+.+..+. ...+++.|.+|+++..++. ...+.. ..+...+...+ ..
T Consensus 57 ~~~L~~~~~~~~~-~~~i~i~d~~G~~~~~~~~----------~~~~~~--------------~~~r~~f~~a~----~~ 107 (217)
T 4dah_A 57 QSILEKTFDSEPR-FSGLYFLNAKGDVTASTTE----------LKTKVN--------------LADRSFFIKAK----ET 107 (217)
T ss_dssp HHHHHHHHTTCTT-EEEEEEEETTCBEEEESSC----------CSSCCB--------------CTTSHHHHHHH----HH
T ss_pred HHHHHHHHhcCCc-ccEEEEECCCCcEEEecCC----------CCCCCC--------------cchhHHHHHHH----hc
Confidence 3345555555443 3478999999998876531 001111 11222233322 22
Q ss_pred CCcceeeeeeecCCCCEEEEEEEEeeeecCCCCEEEEEeeeeccc
Q 037299 813 QDTEKFPFPLFDRNGKYVQALLTANKRVNMEGQIVGAFCFLQIAS 857 (1111)
Q Consensus 813 ~~~~~~e~~~~~~dG~~~~v~~~~~pi~d~~G~v~g~v~~~~DIT 857 (1111)
+...-.+..+-...|+ ++...+.|+++.+|++.|+++..-+..
T Consensus 108 ~~~~is~~~~~~~~g~--~~i~ia~pi~~~~g~~~Gvl~~~i~l~ 150 (217)
T 4dah_A 108 KKTVISDSYSSRITGQ--PIFTICVPVLDSKRNVTDYLVAAIQID 150 (217)
T ss_dssp CSCEECCCEECTTTCS--EEEEEEEEEECTTSCEEEEEEEEEEHH
T ss_pred CCcEEeceEEcCCCCC--EEEEEEEEEECCCCCEEEEEEEEEcHH
Confidence 2232222222234565 667778899998999999999887765
No 235
>3by9_A Sensor protein; histidine kinase sensor domain, phosphoprotein, transferase, two-component regulatory system; 1.70A {Vibrio cholerae}
Probab=38.67 E-value=3.3e+02 Score=27.58 Aligned_cols=108 Identities=13% Similarity=0.133 Sum_probs=59.8
Q ss_pred CcEEEEcCCccEEeecHHHHHHcCCChhhhcCCcccccccchhhHHHHHHHHHHHHcCCCccceEEEEEEeccccCCcEE
Q 037299 614 APIFAVDVHGCVNGWNAKVAELTGLSVEEAMGKSLVHDLVYKEYEEIVDNLLHHALKGEEDKNVEIKLRTFGAENRKKAV 693 (1111)
Q Consensus 614 ~~I~~~D~dG~I~~~N~a~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~e~~l~~~~~~~dG~~~ 693 (1111)
..+++.|.+|.++..+... .+....|... ..++ .+..+++++... +... ....|.
T Consensus 73 ~~i~i~d~~G~~~~~~~~~------~~~~~~~~~~-------~~r~----~~~~a~~~~~~~---~~~~---~~~~g~-- 127 (260)
T 3by9_A 73 ADTYLIDRFGNTIASSNWN------LDRSFIGRNF-------AWRP----YFYLSIAGQKSQ---YFAL---GSTSGQ-- 127 (260)
T ss_dssp SEEEEEETTSBEEEETTTT------STTCCTTCBC-------TTSH----HHHHHTTTSCEE---EEEE---CTTTCC--
T ss_pred ceEEEECCCCCEEEecCCC------CCCCccCCcc-------ccCH----HHHHHHhCCCce---EEEE---ecCCCC--
Confidence 4688999999988764210 0111122221 1222 344555544321 1111 122343
Q ss_pred EEEEEeEeeccCCCCEEEEEEEEEechhHHHHHHHHHhHHHHHHHHHhCCCCCCCCccccCCCCccccchh
Q 037299 694 FVVVNACSSKDYTNNIVGVCFVGQDVTDQKLVMDKFIHIQGDYKAIVHSPNPLIPPIFASDENTCCSEWNT 764 (1111)
Q Consensus 694 ~v~v~~~pi~d~~G~v~gvv~v~~DITerK~ae~~L~~se~~l~~i~~~~~~l~~~I~v~D~~g~ii~~N~ 764 (1111)
++...+.|++ .+|++.|++++..|+..... ++..... -++++|.+|.++.-+.
T Consensus 128 ~~i~~~~pi~-~~g~~~Gvv~~~i~l~~l~~--------------~~~~~~g---~~~l~d~~G~ii~~~~ 180 (260)
T 3by9_A 128 RGYYYAYPVI-YAAEILGVIVVKMDLSAIEQ--------------GWQNKSS---YFVATDDHQVVFMSSQ 180 (260)
T ss_dssp EEEEEEEEEE-ETTEEEEEEEEEECSHHHHH--------------TCCCSSC---EEEEECTTCBEEEESS
T ss_pred EEEEEEEEEc-cCCeEEEEEEEEEeHHHHHH--------------HHhcCCC---cEEEECCCCeEEEcCC
Confidence 4556678888 68999999999888754221 1111111 4788899999887643
No 236
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=37.89 E-value=61 Score=33.62 Aligned_cols=114 Identities=11% Similarity=0.021 Sum_probs=68.2
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHHhhCCCeEEEEeecCCCCcEEEEEecCCCCCCccCCCCCCCCchHHHHHHHHhCC
Q 037299 223 AISQLQSLPGGDIKLLCDTVVESVRQLTGYDRVMVYRFHEDEHGEVVAESKRPDLEPYFGLHYPATDIPQASRFLFKQNR 302 (1111)
Q Consensus 223 ~i~~l~~~~~~~~~~l~~~~~~~vr~~~g~DRVmiY~F~~d~~G~VvaE~~~~~~~~~lg~~~pa~dip~~ar~ly~~n~ 302 (1111)
.+.++.+ +.+.+++.+.+ ..+.+.+|||++..+-+.+...+ .+ ..++ -+..|..-.+.|..+.
T Consensus 8 ~~~~l~~--a~~~~~l~~~l-~~~~~~lGf~~~~y~~~~~~~~~-------~~--~~~i-----~~~~p~~w~~~Y~~~~ 70 (237)
T 3szt_A 8 YLEILSR--ITTEEEFFSLV-LEICGNYGFEFFSFGARAPFPLT-------AP--KYHF-----LSNYPGEWKSRYISED 70 (237)
T ss_dssp HHHHHHH--CCSHHHHHHHH-HHHHHHTTCSEEEEEEECCCSTT-------SC--CEEE-----EECCCHHHHHHHHHTT
T ss_pred HHHHHHc--CCCHHHHHHHH-HHHHHHcCCCeEEEEeecCCCCC-------CC--CeEe-----eCCCCHHHHHHHHHCC
Confidence 4566666 55889998887 77888999999998876643211 01 1111 2345788888888886
Q ss_pred eeEeeccCCCcceeecCCCCCCcccccCccccCCChhHHHHHHhcCcceEEEEEEEEc
Q 037299 303 VRMIVDCHATPLCVIQDEGLMQPLCLVGSTLRAPHGCHAQYMANMGSIASLALAVIIN 360 (1111)
Q Consensus 303 ~r~i~d~~~~~~~~~~~~~~~~~ldls~~~lRsvsp~h~~yl~nmgv~asl~~~i~~~ 360 (1111)
...|. ||-.. ......|+.-+....+. .+--.++.+.+|+...+++|+.-.
T Consensus 71 y~~~D-----Pv~~~-~~~~~~p~~W~~~~~~~-~~~~~~~a~~~gl~~G~~~p~~~~ 121 (237)
T 3szt_A 71 YTSID-----PIVRH-GLLEYTPLIWNGEDFQE-NRFFWEEALHHGIRHGWSIPVRGK 121 (237)
T ss_dssp GGGTC-----HHHHH-HHHSCSCEEEETTTCSS-CHHHHHHHHHTTCCEEEEEEEECG
T ss_pred CcccC-----hHhhh-hcCCCCCEEeCCCCccc-HHHHHHHHHHcCCCCEEEEEeeCC
Confidence 54322 11100 00111222222222222 245567888999999999999754
No 237
>3cit_A Sensor histidine kinase; MEGA: 3.30.450.40, structural genomics, sensor histidine KIN pseudomonas syringae, PSI-2; HET: MSE; 1.90A {Pseudomonas syringae PV}
Probab=34.09 E-value=92 Score=30.30 Aligned_cols=54 Identities=13% Similarity=0.164 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhCCCeEEEEeecCCCCcEEEEEec
Q 037299 215 QSQKLAVRAISQLQSLPGGDIKLLCDTVVESVRQLTGYDRVMVYRFHEDEHGEVVAESK 273 (1111)
Q Consensus 215 ~~~~~~~~~i~~l~~~~~~~~~~l~~~~~~~vr~~~g~DRVmiY~F~~d~~G~VvaE~~ 273 (1111)
..++++.++-..|.+ .+.+++++.+.+..+++.|+||..+|-+|+| |+....+.
T Consensus 12 ~rLrlL~e~~~~L~~---l~~~~~l~~il~~a~~~~~~d~gsL~l~d~~--~~l~~~aa 65 (160)
T 3cit_A 12 ARLRLLVDTGQELIQ---LPPEAMRKCVLQRACAFVAMDHGLLLEWGAD--NGVQTTAR 65 (160)
T ss_dssp HHHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHTTCSEEEEEECC----CCCEEEEE
T ss_pred HHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHhccCeeEEEEEcCC--Cceeeeec
Confidence 345566666666644 3679999999999999999999999999995 66654443
No 238
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=32.58 E-value=69 Score=38.23 Aligned_cols=94 Identities=9% Similarity=0.094 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhhcCCCC-CceEEEEEEEccccCCCCceeEEEEEEEeeCCC---CCChhhhhh-----------ccCCCC
Q 037299 995 QVLADFLLNMVRYSPSA-EGWVEIHVRPTLKQSSEGQTIVHNEFRMVCPGE---GLPPELVQD-----------MFHSSR 1059 (1111)
Q Consensus 995 qVl~nLl~NAik~t~~~-~g~I~I~v~~~~~~~~~~~~~~~v~i~V~DnG~---GIp~e~~~~-----------iFepf~ 1059 (1111)
.++.++|.||+-|..-. .+.|.|.+..-.+ .|.|...|. |++.+.+.. +|....
T Consensus 299 ~aiREal~NAl~HrDY~~~~~i~i~i~~~~d-----------riei~npG~l~~~~t~e~~~~~~s~RNp~la~~~~~~~ 367 (583)
T 3lmm_A 299 LAVREAMLNAMIHRDWNRSEPIDVRWIELDS-----------TLIVRSPGGFPAAITSENVLSNRAARYPALADLYRALG 367 (583)
T ss_dssp HHHHHHHHHHHHHSCSSSSSCEEEEEETTTT-----------EEEEEEESCCCTTCCTTSSTTCCCCSCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccccCCCCCEEEEEEecCC-----------EEEEEcCCCCCCCCCHHHhcCCCCCCCHHHHHHHHHhC
Confidence 78899999999874421 3667777642244 356668884 555554322 111112
Q ss_pred CCCCccchHHHHHHHHHHcCCE-EEEEecCCceEEEEEEEee
Q 037299 1060 WMTQEGLGLSMCRKILKLMNGE-VQYIRESERCYFLIIFELP 1100 (1111)
Q Consensus 1060 ~~~G~GLGL~i~r~iVe~~gG~-I~v~s~~ggstF~~~L~LP 1100 (1111)
-..+.|-|+.-+.+..+..|.. -.+....+ ..|+++|+.+
T Consensus 368 ~~e~~GsGi~~i~~~~~~~g~~~P~~~~~~~-~~~~v~l~~~ 408 (583)
T 3lmm_A 368 LVDKQGVGVDRMYQAMIALGHRPPTIEEIAG-PFVETTLVGG 408 (583)
T ss_dssp CSCSSHHHHHHHHHHHHHTTCCCCEEEEETT-TEEEEEEECC
T ss_pred ccccCCcHHHHHHHHHHHcCCCCCeEEEcCC-CEEEEEEeCC
Confidence 2346688887777777777764 35554333 4567766543
No 239
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A*
Probab=29.81 E-value=32 Score=37.97 Aligned_cols=46 Identities=17% Similarity=0.174 Sum_probs=38.1
Q ss_pred cEEEEcC-CccEEeecHHHHHHcCCChhhhcCCcccccccchhhHHHHH
Q 037299 615 PIFAVDV-HGCVNGWNAKVAELTGLSVEEAMGKSLVHDLVYKEYEEIVD 662 (1111)
Q Consensus 615 ~I~~~D~-dG~I~~~N~a~~~l~G~~~eeliG~~~~~~l~~~~~~~~~~ 662 (1111)
.++++|. +++|+.+...+.+++|.++++++|+++. +++.+ ....+.
T Consensus 54 ~LL~l~~~~~~I~~~S~N~~~~lg~~~~~llG~~l~-~ll~~-~~~~l~ 100 (343)
T 3s7o_A 54 ALLTADGHSGEVLQMSLNAATFLGQEPTVLRGQTLA-ALLPE-QWPALQ 100 (343)
T ss_dssp EEEEEETTTCBEEEEETTHHHHHSSCHHHHTTCBHH-HHSTT-THHHHH
T ss_pred EEEEEECCCCEEEEEcccHHHHhCcChHHHcCCCHH-HHHhH-HHHHHH
Confidence 3466776 8999999999999999999999999998 77776 655443
No 240
>3pxp_A Helix-turn-helix domain protein; DNA-binding, basic helix-loop-helix motif, BHLH motif, lambd repressor-like DNA-binding fold; HET: MSE MYR; 2.30A {Chloroflexus aurantiacus}
Probab=27.71 E-value=75 Score=34.23 Aligned_cols=39 Identities=13% Similarity=0.156 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhcCCcEEEEcCCccEEeecHHHHHHcC
Q 037299 599 SSVAREMVRLIETATAPIFAVDVHGCVNGWNAKVAELTG 637 (1111)
Q Consensus 599 ~~~~~~l~~lie~~~~~I~~~D~dG~I~~~N~a~~~l~G 637 (1111)
......++.+++..+.+-+++|..+.|+.||+.+..+|+
T Consensus 95 ~~v~p~l~~lLd~l~~PA~V~d~~~dvla~N~~a~~L~~ 133 (292)
T 3pxp_A 95 EESLQYLIDMIRNMNVPAFVTDQYVNIIAANMITIRFFN 133 (292)
T ss_dssp HHHHHHHHHHHHTCSSCEEEEETTCBEEEEEHHHHHHHT
T ss_pred cccCHHHHHHHHhcCCCeEEECCCCCHhhcCHHHHHHhC
Confidence 345567889999998899999999999999999999996
No 241
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=26.69 E-value=2.3e+02 Score=29.70 Aligned_cols=123 Identities=10% Similarity=0.001 Sum_probs=72.8
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhCCCeEEEEeecCCCCcEEEEEecCCCCCCccCCCCCCCCchHHHHH
Q 037299 217 QKLAVRAISQLQSLPGGDIKLLCDTVVESVRQLTGYDRVMVYRFHEDEHGEVVAESKRPDLEPYFGLHYPATDIPQASRF 296 (1111)
Q Consensus 217 ~~~~~~~i~~l~~~~~~~~~~l~~~~~~~vr~~~g~DRVmiY~F~~d~~G~VvaE~~~~~~~~~lg~~~pa~dip~~ar~ 296 (1111)
+..+...+.+++. +.+.+++. .+.+.+.+.+|||+++.+-......+..- ++..++ .+..|..-.+
T Consensus 21 ~~~l~~~l~~l~~--a~~~~~l~-~~l~~~~~~lGf~~~~y~~~~~~~~~~~~------~~~~~i-----~~~yp~~W~~ 86 (265)
T 3qp6_A 21 QWTLLEWIHMAGH--IETEGELK-AFLDNILSQAPSDRIILVLGRLNNQNQIQ------RMEKVL-----NVSYPSDWLN 86 (265)
T ss_dssp HHHHHHHHHHHTT--CCSHHHHH-HHHHHHTCSSTTCEEEEEEEEECTTSCEE------EEEEEE-----ESSCCHHHHH
T ss_pred HHHHHHHHHHHhc--CCCHHHHH-HHHHHHHHHcCCCEEEEEeecCCCCcccc------ccccee-----ecCCcHHHHH
Confidence 4456788899998 55899988 55667888999999987544432222110 000111 2455888999
Q ss_pred HHHhCCeeEeeccCCCcceeecCCCCCCcccccCccccCCChhH---HHHHHhcCcceEEEEEE-EEc
Q 037299 297 LFKQNRVRMIVDCHATPLCVIQDEGLMQPLCLVGSTLRAPHGCH---AQYMANMGSIASLALAV-IIN 360 (1111)
Q Consensus 297 ly~~n~~r~i~d~~~~~~~~~~~~~~~~~ldls~~~lRsvsp~h---~~yl~nmgv~asl~~~i-~~~ 360 (1111)
.|..+..-.|. |++.......|+.-+....+..++-. .+..+.+|+...+++|+ ...
T Consensus 87 ~Y~~~~y~~~D-------Pvv~~~~~~~p~~W~~~~~~~~~~~~~~~~~~a~~~Gl~~G~tipi~~~~ 147 (265)
T 3qp6_A 87 QYSQENFAQHD-------PIMRIHLGQGPVIWEERFSRAKGSEEKRFIAEASSNGMGSGITFSAASDR 147 (265)
T ss_dssp HHHHTTGGGTC-------GGGGCCTTSSCEEHHHHHTTCCSHHHHHHHHHHHHTTCSSEEEEEEECSS
T ss_pred HHHHCcCcccC-------hHHHHhcCCCCEEECCcccccCChhHHHHHHHHHHcCCccceEEEEEEcC
Confidence 99987654321 12211113344444332222233333 55568999999999999 533
No 242
>3qp1_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 1.55A {Chromobacterium violaceum} PDB: 3qp2_A* 3qp4_A* 3qp8_A*
Probab=26.44 E-value=2.8e+02 Score=27.12 Aligned_cols=116 Identities=8% Similarity=-0.010 Sum_probs=70.7
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhCCCeEEEEeecCCCCcEEEEEecCCCCCC---ccCCCCCCCCchHHHHH
Q 037299 220 AVRAISQLQSLPGGDIKLLCDTVVESVRQLTGYDRVMVYRFHEDEHGEVVAESKRPDLEP---YFGLHYPATDIPQASRF 296 (1111)
Q Consensus 220 ~~~~i~~l~~~~~~~~~~l~~~~~~~vr~~~g~DRVmiY~F~~d~~G~VvaE~~~~~~~~---~lg~~~pa~dip~~ar~ 296 (1111)
+.+.+.++++ +.+.+++.+. ...+.+..|||+++.---.....|. .++ ++= +..|+.-.+
T Consensus 19 l~~~~~~l~~--a~s~~~l~~~-l~~~~~~~Gf~~~~y~~~~~~~~~~---------~~~~~~~~~-----~nyP~~W~~ 81 (182)
T 3qp1_A 19 LLEWIHMAGH--IETENELKAF-LDQVLSQAPSERLLLALGRLNNQNQ---------IQRLERVLN-----VSYPSDWLD 81 (182)
T ss_dssp HHHHHHHHTT--CCSHHHHHHH-HHHHHTTSSCSEEEEEEEEECTTSC---------EEEEEEEEE-----SSSCHHHHH
T ss_pred HHHHHHHHHh--cCCHHHHHHH-HHHHHHhcCCCeEEEEeecCCCccc---------ccchhhhhh-----cCCCHHHHH
Confidence 3567888888 5588888876 4568889999999764332211111 122 122 234788999
Q ss_pred HHHhCCeeEeeccCCCcceeec-CCCCCCcccccCccccCCChhH---HHHHHhcCcceEEEEEEEEc
Q 037299 297 LFKQNRVRMIVDCHATPLCVIQ-DEGLMQPLCLVGSTLRAPHGCH---AQYMANMGSIASLALAVIIN 360 (1111)
Q Consensus 297 ly~~n~~r~i~d~~~~~~~~~~-~~~~~~~ldls~~~lRsvsp~h---~~yl~nmgv~asl~~~i~~~ 360 (1111)
.|.++..-.|. |++. .. ...|+.-+....+..++-. .+..+.+|++..+++||.--
T Consensus 82 ~Y~~~~y~~~D-------Pvv~~~~-~~~p~~W~~~~~~~~~~~~~~~~~~a~~~Gl~~G~tvp~~~~ 141 (182)
T 3qp1_A 82 QYMKENYAQHD-------PILRIHL-GQGPVMWEERFNRAKGAEEKRFIAEATQNGMGSGITFSAASE 141 (182)
T ss_dssp HHHHTTGGGTC-------GGGGSCT-TSCCEEHHHHHHTCCSHHHHHHHHHHHHTTCSSEEEEEEEET
T ss_pred HHHHCCCcccC-------cchHhhc-CCCCEecCchhhcccChHHHHHHHHHHHcCCCceEEEEeecC
Confidence 99999875442 2222 12 3344444433333334433 45567999999999999643
No 243
>2hl0_A Threonyl-tRNA synthetase; translation, editing, aminoacyl-tRNA synthetase, enzyme mechanism, enantioselectivity, ligase; HET: A3S; 1.86A {Pyrococcus abyssi} PDB: 2hkz_A 1y2q_A* 2hl2_A* 3pd2_A* 2hl1_A* 3pd3_A* 3pd4_A* 3pd5_A*
Probab=24.47 E-value=71 Score=30.32 Aligned_cols=29 Identities=17% Similarity=0.355 Sum_probs=22.0
Q ss_pred CHHHHHHHHHHHHHHh---hCCCeEEEEeecC
Q 037299 234 DIKLLCDTVVESVRQL---TGYDRVMVYRFHE 262 (1111)
Q Consensus 234 ~~~~l~~~~~~~vr~~---~g~DRVmiY~F~~ 262 (1111)
+.+.+...+|+||..+ +|++|||+|-|..
T Consensus 52 ~~~~vv~~av~eI~~~a~kv~~~~ivlYPyAH 83 (143)
T 2hl0_A 52 NPEEVSLKAIEEISKVAEQVKAENVFVYPFAH 83 (143)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCCEEEEEECGG
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCEEEEecccc
Confidence 3466777777777665 6999999999975
Done!