BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037300
(159 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XG2|B Chain B, Crystal Structure Of The Complex Between Pectin
Methylesterase And Its Inhibitor Protein
Length = 153
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 72/149 (48%), Gaps = 6/149 (4%)
Query: 16 ENDLIEATCRKTSYPDLCIKTLRSSPGSSGADVKGLAHIILESASAYCNDTYEQVKKLLN 75
EN LI C KT P LC++ L S P S+ D+KGL ++ A A T + + L N
Sbjct: 2 ENHLISEICPKTRNPSLCLQALESDPRSASKDLKGLGQFSIDIAQASAKQTSKIIASLTN 61
Query: 76 ETKDKTMRNCLDVCFQVYDLAIYEIPTAIKYLESGDYDSAVQYANDGIIESDTCEKIPKS 135
+ D ++ + C + Y AI + A ++L SGDY+S YA+ + TCE +
Sbjct: 62 QATDPKLKGRYETCSENYADAIDSLGQAKQFLTSGDYNSLNIYASAAFDGAGTCEDSFEG 121
Query: 136 P------LTDRNNGLTNLCTIALDMINLF 158
P L + L +LC I L + NL
Sbjct: 122 PPNIPTQLHQADLKLEDLCDIVLVISNLL 150
>pdb|2CJ4|A Chain A, Crystal Structure Of A Cell Wall Invertase Inhibitor From
Tobacco At Ph 4.6
pdb|2CJ4|B Chain B, Crystal Structure Of A Cell Wall Invertase Inhibitor From
Tobacco At Ph 4.6
pdb|2CJ5|A Chain A, Crystal Structure Of A Cell Wall Invertase Inhibitor From
Tobacco (Ph 5.0)
pdb|2CJ6|A Chain A, Crystal Structure Of A Cell Wall Invertase Inhibitor From
Tobacco (Ph 7.5)
pdb|2CJ7|A Chain A, Crystal Structure Of A Cell Wall Invertase Inhibitor From
Tobacco (ph 9.0)
pdb|2CJ8|A Chain A, Crystal Structure Of A Cell Wall Invertase Inhibitor From
Tobacco (Ph 9.5)
pdb|2CJ8|B Chain B, Crystal Structure Of A Cell Wall Invertase Inhibitor From
Tobacco (Ph 9.5)
Length = 150
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 70/150 (46%), Gaps = 12/150 (8%)
Query: 14 GEENDLIEATCRKTSYPDLCIKTLRSSPGSSGADVKGLAHIILESASAYCNDTYEQVKKL 73
G N+L+E TC+ T LC+KTL S S+ D+ LA I++++ A N + KL
Sbjct: 1 GAMNNLVETTCKNTPNYQLCLKTLLSDKRSATGDITTLALIMVDAIKAKANQAAVTISKL 60
Query: 74 LNETKDKTMRNCLDVCFQVYDLAI-YEIPTAIKYLESGDYDSAVQYANDGII----ESDT 128
+ + L C Y + + +P AI+ L GD ++A DG++ ++
Sbjct: 61 RHSNPPAAWKGPLKNCAFSYKVILTASLPEAIEALTKGD----PKFAEDGMVGSSGDAQE 116
Query: 129 CE---KIPKSPLTDRNNGLTNLCTIALDMI 155
CE K KSP + N + L + ++
Sbjct: 117 CEEYFKGSKSPFSALNIAVHELSDVGRAIV 146
>pdb|1RJ1|A Chain A, Crystal Structure Of A Cell Wall Invertase Inhibitor From
Tobacco
pdb|1RJ4|A Chain A, Structure Of A Cell Wall Invertase Inhibitor From Tobacco
In Complex With Cd2+
pdb|1RJ4|B Chain B, Structure Of A Cell Wall Invertase Inhibitor From Tobacco
In Complex With Cd2+
pdb|1RJ4|C Chain C, Structure Of A Cell Wall Invertase Inhibitor From Tobacco
In Complex With Cd2+
pdb|1RJ4|D Chain D, Structure Of A Cell Wall Invertase Inhibitor From Tobacco
In Complex With Cd2+
Length = 151
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 12/147 (8%)
Query: 17 NDLIEATCRKTSYPDLCIKTLRSSPGSSGADVKGLAHIILESASAYCNDTYEQVKKLLNE 76
N+L+E TC+ T LC+KTL S S+ D+ LA I++++ A N + KL +
Sbjct: 5 NNLVETTCKNTPNYQLCLKTLLSDKRSATGDITTLALIMVDAIKAKANQAAVTISKLRHS 64
Query: 77 TKDKTMRNCLDVCFQVYDLAI-YEIPTAIKYLESGDYDSAVQYANDGII----ESDTCE- 130
+ L C Y + + +P AI+ L GD ++A DG++ ++ CE
Sbjct: 65 NPPAAWKGPLKNCAFSYKVILTASLPEAIEALTKGD----PKFAEDGMVGSSGDAQECEE 120
Query: 131 --KIPKSPLTDRNNGLTNLCTIALDMI 155
K KSP + N + L + ++
Sbjct: 121 YFKGSKSPFSALNIAVHELSDVGRAIV 147
>pdb|2XQR|B Chain B, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
pdb|2XQR|D Chain D, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
pdb|2XQR|F Chain F, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
pdb|2XQR|H Chain H, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
pdb|2XQR|J Chain J, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
pdb|2XQR|L Chain L, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
Length = 149
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 12/147 (8%)
Query: 17 NDLIEATCRKTSYPDLCIKTLRSSPGSSGADVKGLAHIILESASAYCNDTYEQVKKLLNE 76
N+L+E TC+ T LC+KTL S S+ D+ LA I++++ A N + KL +
Sbjct: 3 NNLVETTCKNTPNYQLCLKTLLSDKRSATGDITTLALIMVDAIKAKANQAAVTISKLRHS 62
Query: 77 TKDKTMRNCLDVCFQVYDLAI-YEIPTAIKYLESGDYDSAVQYANDGII----ESDTCE- 130
+ L C Y + + +P AI+ L GD ++A DG++ ++ CE
Sbjct: 63 NPPAAWKGPLKNCAFSYKVILTASLPEAIEALTKGD----PKFAEDGMVGSSGDAQECEE 118
Query: 131 --KIPKSPLTDRNNGLTNLCTIALDMI 155
K KSP + N + L + ++
Sbjct: 119 YFKGSKSPFSALNIAVHELSDVGRAIV 145
>pdb|1X90|A Chain A, Crystal Structure Of Mutant Form B Of A Pectin
Methylesterase Inhibitor From Arabidopsis
pdb|1X90|B Chain B, Crystal Structure Of Mutant Form B Of A Pectin
Methylesterase Inhibitor From Arabidopsis
Length = 152
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 67/144 (46%), Gaps = 14/144 (9%)
Query: 24 CRKTSYPDLCIKTLRSSPGSSGADVKGLAHIILESASAYCNDTYEQVKKLLNETKDKTMR 83
C KT P C+K L + S A+++ LA L+S A T ++++ +++ D +
Sbjct: 11 CDKTLNPSFCLKFLNTKFAS--ANLQALAKTTLDSTQARATQTLKKLQSIIDGGVDPRSK 68
Query: 84 NCLDVCFQVYDLAIYEIPTAIKYLESGD---YDSAVQYANDGIIESDTCEKIPK------ 134
C Y+ AI + A ++L SGD + V A DG +DTC K
Sbjct: 69 LAYRSCVDEYESAIGNLEEAFEHLASGDGMGMNMKVSAALDG---ADTCLDDVKRLRSVD 125
Query: 135 SPLTDRNNGLTNLCTIALDMINLF 158
S + + + + NLC IAL + N+
Sbjct: 126 SSVVNNSKTIKNLCGIALVISNML 149
>pdb|1AXI|B Chain B, Structural Plasticity At The Hgh:hghbp Interface
Length = 236
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 67 YEQVKKLLNETKDKTMRNCLDVCFQVYDLAI---YEIPTAIKYLESGDY 112
YE K +NETK K M L VY L + YE+ K SG+Y
Sbjct: 174 YELQYKEVNETKWKMMDPILTTSVPVYSLKVDKEYEVRVRSKQRNSGNY 222
>pdb|1HWG|B Chain B, 1:2 Complex Of Human Growth Hormone With Its Soluble
Binding Protein
pdb|1HWG|C Chain C, 1:2 Complex Of Human Growth Hormone With Its Soluble
Binding Protein
pdb|1HWH|B Chain B, 1:1 Complex Of Human Growth Hormone Mutant G120r With Its
Soluble Binding Protein
Length = 237
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 67 YEQVKKLLNETKDKTMRNCLDVCFQVYDLAI---YEIPTAIKYLESGDY 112
YE K +NETK K M L VY L + YE+ K SG+Y
Sbjct: 174 YELQYKEVNETKWKMMDPILTTSVPVYSLKVDKEYEVRVRSKQRNSGNY 222
>pdb|1A22|B Chain B, Human Growth Hormone Bound To Single Receptor
pdb|1KF9|B Chain B, Phage Display Derived Variant Of Human Growth Hormone
Complexed With Two Copies Of The Extracellular Domain Of
Its Receptor
pdb|1KF9|C Chain C, Phage Display Derived Variant Of Human Growth Hormone
Complexed With Two Copies Of The Extracellular Domain Of
Its Receptor
pdb|1KF9|E Chain E, Phage Display Derived Variant Of Human Growth Hormone
Complexed With Two Copies Of The Extracellular Domain Of
Its Receptor
pdb|1KF9|F Chain F, Phage Display Derived Variant Of Human Growth Hormone
Complexed With Two Copies Of The Extracellular Domain Of
Its Receptor
Length = 238
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 67 YEQVKKLLNETKDKTMRNCLDVCFQVYDLAI---YEIPTAIKYLESGDY 112
YE K +NETK K M L VY L + YE+ K SG+Y
Sbjct: 174 YELQYKEVNETKWKMMDPILTTSVPVYSLKVDKEYEVRVRSKQRNSGNY 222
>pdb|3HHR|B Chain B, Human Growth Hormone And Extracellular Domain Of Its
Receptor: Crystal Structure Of The Complex
pdb|3HHR|C Chain C, Human Growth Hormone And Extracellular Domain Of Its
Receptor: Crystal Structure Of The Complex
Length = 205
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 67 YEQVKKLLNETKDKTMRNCLDVCFQVYDLAI---YEIPTAIKYLESGDY 112
YE K +NETK K M L VY L + YE+ K SG+Y
Sbjct: 143 YELQYKEVNETKWKMMDPILTTSVPVYSLKVDKEYEVRVRSKQRNSGNY 191
>pdb|2AEW|A Chain A, A Model For Growth Hormone Receptor Activation Based On
Subunit Rotation Within A Receptor Dimer
pdb|2AEW|B Chain B, A Model For Growth Hormone Receptor Activation Based On
Subunit Rotation Within A Receptor Dimer
Length = 205
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 67 YEQVKKLLNETKDKTMRNCLDVCFQVYDLAI---YEIPTAIKYLESGDY 112
YE K +NETK K M L VY L + YE+ K SG+Y
Sbjct: 146 YELQYKEVNETKWKMMDPILTTSVPVYSLKVDKEYEVRVRSKQRNSGNY 194
>pdb|1KFX|L Chain L, Crystal Structure Of Human M-Calpain Form I
pdb|1KFU|L Chain L, Crystal Structure Of Human M-Calpain Form Ii
Length = 699
Score = 27.3 bits (59), Expect = 3.5, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 25/52 (48%)
Query: 66 TYEQVKKLLNETKDKTMRNCLDVCFQVYDLAIYEIPTAIKYLESGDYDSAVQ 117
++E+ K LN+ + CL+ D + IP+A+ + E G Y S +
Sbjct: 19 SHERAIKYLNQDYEALRNECLEAGTLFQDPSFPAIPSALGFKELGPYSSKTR 70
>pdb|3KHY|A Chain A, Crystal Structure Of A Propionate Kinase From Francisella
Tularensis Subsp. Tularensis Schu S4
pdb|3KHY|B Chain B, Crystal Structure Of A Propionate Kinase From Francisella
Tularensis Subsp. Tularensis Schu S4
Length = 384
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 104 IKYLESGDYDSAVQYANDGIIESDTCEKI 132
+KYLE+G Y + D ++E+ EKI
Sbjct: 51 VKYLENGSYKDVFEXLKDFLVENKHLEKI 79
>pdb|2G8G|A Chain A, Structurally Mapping The Diverse Phenotype Of Adeno-
Associated Virus Serotype 4
Length = 524
Score = 26.6 bits (57), Expect = 5.8, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 12/80 (15%)
Query: 69 QVKKLLNETKDKTMRNCLDVCFQVYDLAIYEIPTAIKYLESG-------DYDSAVQYAND 121
QVK++ + T+ N L Q++ + YE+P + + G D QY
Sbjct: 100 QVKEVTTSNGETTVANNLTSTVQIFADSSYELPYVMDAGQEGSLPPFPNDVFMVPQYGYC 159
Query: 122 GIIESDTCEKIPKSPLTDRN 141
G++ +T ++ TDRN
Sbjct: 160 GLVTGNTSQQ-----QTDRN 174
>pdb|3QCM|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
2-[(3,4-Dichlorobenzyl)sulfanyl]-4-{[3-({n-[2-
(Methylamino)ethyl]glycyl}amino)phenyl]ethynyl}benzoic
Acid
pdb|3QCM|B Chain B, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
2-[(3,4-Dichlorobenzyl)sulfanyl]-4-{[3-({n-[2-
(Methylamino)ethyl]glycyl}amino)phenyl]ethynyl}benzoic
Acid
Length = 310
Score = 26.2 bits (56), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 41/101 (40%), Gaps = 6/101 (5%)
Query: 13 RGEENDLIEATCRKTSYPDL-----CIKTLRSSPGSSGADVKGLAHIILE-SASAYCNDT 66
+G +N+ + T +PD+ + L SS A + +++ SA T
Sbjct: 192 KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGT 251
Query: 67 YEQVKKLLNETKDKTMRNCLDVCFQVYDLAIYEIPTAIKYL 107
Y + +L + KDK+ N L + Y + T +Y+
Sbjct: 252 YIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYI 292
>pdb|2H4V|A Chain A, Crystal Structure Of The Human Tyrosine Receptor
Phosphatase Gamma
pdb|2H4V|B Chain B, Crystal Structure Of The Human Tyrosine Receptor
Phosphatase Gamma
Length = 320
Score = 26.2 bits (56), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 41/101 (40%), Gaps = 6/101 (5%)
Query: 13 RGEENDLIEATCRKTSYPDL-----CIKTLRSSPGSSGADVKGLAHIILE-SASAYCNDT 66
+G +N+ + T +PD+ + L SS A + +++ SA T
Sbjct: 203 KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGT 262
Query: 67 YEQVKKLLNETKDKTMRNCLDVCFQVYDLAIYEIPTAIKYL 107
Y + +L + KDK+ N L + Y + T +Y+
Sbjct: 263 YIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYI 303
>pdb|3QCL|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
2-[(3,4-Dichlorobenzyl)sulfanyl]-4-(4-Hydroxybut-1-Yn-1-
Yl)benzoic Acid
pdb|3QCN|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, Trigonal Crystal Form
Length = 310
Score = 26.2 bits (56), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 41/101 (40%), Gaps = 6/101 (5%)
Query: 13 RGEENDLIEATCRKTSYPDL-----CIKTLRSSPGSSGADVKGLAHIILE-SASAYCNDT 66
+G +N+ + T +PD+ + L SS A + +++ SA T
Sbjct: 192 KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGT 251
Query: 67 YEQVKKLLNETKDKTMRNCLDVCFQVYDLAIYEIPTAIKYL 107
Y + +L + KDK+ N L + Y + T +Y+
Sbjct: 252 YIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYI 292
>pdb|3QCB|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, Apo
pdb|3QCB|B Chain B, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, Apo
pdb|3QCC|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With Vanadate, Orthorhombic Crystal Form
pdb|3QCC|B Chain B, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With Vanadate, Orthorhombic Crystal Form
pdb|3QCD|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With Vanadate, Trigonal Crystal Form
pdb|3QCE|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
3-[(3,4-Dichlorobenzyl)sulfanyl]thiophene-2-Carboxylic
Acid Via Soaking
pdb|3QCE|B Chain B, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
3-[(3,4-Dichlorobenzyl)sulfanyl]thiophene-2-Carboxylic
Acid Via Soaking
pdb|3QCF|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
3-[(3,4-Dichlorobenzyl)sulfanyl]thiophene-2-Carboxylic
Acid Via Co-Crystallization
pdb|3QCF|B Chain B, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
3-[(3,4-Dichlorobenzyl)sulfanyl]thiophene-2-Carboxylic
Acid Via Co-Crystallization
pdb|3QCG|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
3-[(3-Bromo-4-Chlorobenzyl)sulfanyl]thiophene-2-
Carboxylic Acid
pdb|3QCH|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
3-[(3,4-Dichlorobenzyl)sulfanyl]-N-(Methylsulfonyl)
Thiophene-2-Carboxamide
pdb|3QCI|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
N-[(3-Aminophenyl)sulfonyl]-3-[(3,4-Dichlorobenzyl)
Sulfanyl]thiophene-2-Carboxamide
pdb|3QCJ|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
5-[({3-[(3,4-Dichlorobenzyl)sulfanyl]thiophen-2-
Yl}carbonyl)sulfamoyl]-2-Methoxybenzoic Acid
pdb|3QCK|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
2-[(3,4-Dichlorobenzyl)sulfanyl]benzoic Acid
Length = 310
Score = 26.2 bits (56), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 41/101 (40%), Gaps = 6/101 (5%)
Query: 13 RGEENDLIEATCRKTSYPDL-----CIKTLRSSPGSSGADVKGLAHIILE-SASAYCNDT 66
+G +N+ + T +PD+ + L SS A + +++ SA T
Sbjct: 192 KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGT 251
Query: 67 YEQVKKLLNETKDKTMRNCLDVCFQVYDLAIYEIPTAIKYL 107
Y + +L + KDK+ N L + Y + T +Y+
Sbjct: 252 YIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYI 292
>pdb|2PBN|A Chain A, Crystal Structure Of The Human Tyrosine Receptor Phosphate
Gamma
Length = 313
Score = 25.8 bits (55), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 41/101 (40%), Gaps = 6/101 (5%)
Query: 13 RGEENDLIEATCRKTSYPDL-----CIKTLRSSPGSSGADVKGLAHIILE-SASAYCNDT 66
+G +N+ + T +PD+ + L SS A + +++ SA T
Sbjct: 193 KGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARMPETGPVLVHCSAGVGRTGT 252
Query: 67 YEQVKKLLNETKDKTMRNCLDVCFQVYDLAIYEIPTAIKYL 107
Y + +L + KDK+ N L + Y + T +Y+
Sbjct: 253 YIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYI 293
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,641,379
Number of Sequences: 62578
Number of extensions: 182763
Number of successful extensions: 498
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 489
Number of HSP's gapped (non-prelim): 23
length of query: 159
length of database: 14,973,337
effective HSP length: 91
effective length of query: 68
effective length of database: 9,278,739
effective search space: 630954252
effective search space used: 630954252
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)