Query 037301
Match_columns 453
No_of_seqs 224 out of 1332
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 18:32:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037301.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037301hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qe7_A Uracil permease; uracil 99.9 7.6E-24 2.6E-28 220.5 32.9 339 73-450 40-408 (429)
2 3qe7_A Uracil permease; uracil 88.9 3.8 0.00013 42.0 12.8 89 362-450 92-201 (429)
3 1bts_A BAND 3 anion transport 22.7 38 0.0013 20.7 1.5 24 321-344 3-26 (26)
4 2hfr_A Fowlicidin-3, cathelici 7.0 1.6E+02 0.0055 17.6 0.9 17 236-252 2-18 (27)
5 2eke_C Ubiquitin-like protein 6.4 2.5E+02 0.0084 22.7 2.2 20 1-21 1-20 (106)
6 3jrt_A Integron cassette prote 6.4 3.2E+02 0.011 23.7 2.9 25 41-65 21-49 (192)
7 2v6z_M DNA polymerase epsilon 6.2 1.5E+02 0.0052 23.9 0.8 33 1-37 1-33 (99)
8 1hkf_A NKP44, NK cell activati 5.7 1.3E+02 0.0044 24.2 0.0 16 1-16 1-16 (122)
9 3grk_A Enoyl-(acyl-carrier-pro 5.6 1.3E+02 0.0044 28.2 -0.0 14 5-18 3-16 (293)
10 2fyu_K Ubiquinol-cytochrome C 5.5 4.2E+02 0.014 19.0 2.7 31 143-174 12-42 (56)
No 1
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=99.93 E-value=7.6e-24 Score=220.48 Aligned_cols=339 Identities=16% Similarity=0.202 Sum_probs=221.7
Q ss_pred CCChhhHHHHHHHHHHHHHHHhCCcccc--chhHHH-HHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHH--hHH-HHHH
Q 037301 73 DLDLGTTLIFTGIYNIVTGAIYGVPMPV--QPMKSI-AAVAISNGSDFGIPEIMAAGICTGGILFVLGVT--GLM-HLAY 146 (453)
Q Consensus 73 Glp~~~~l~~~gl~~iv~gl~~~~Pl~v--~p~~a~-aa~~i~~~~~~~~~~~~~A~ll~G~i~lllGl~--rl~-~~l~ 146 (453)
|+|+++.++++|+++++.+++.|.|+++ ++.-++ +...... +++|++++++.+++|++++++|++ |++ +|+.
T Consensus 40 Gl~~~~~l~~agi~Tllq~~~~~~~lP~~~G~sfafi~~~~~i~--~~g~~~~~gavi~aGli~ill~~~~~~~g~~~l~ 117 (429)
T 3qe7_A 40 HINPATVLLFNGIGTLLYLFICKGKIPAYLGSSFAFISPVLLLL--PLGYEVALGGFIMCGVLFCLVSFIVKKAGTGWLD 117 (429)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHTTTCCCCCEEECGGGHHHHHHHG--GGCHHHHHHHHHHHHHHHHHHHHHHHTTCSHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCCCeEecChHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 9999999999999999999988777664 332121 1112222 178999999999999999999999 764 7999
Q ss_pred hhCCHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccCCCCccchhHHHHHHHHHHHHHHHhccCcchhhhhhccccc
Q 037301 147 KLIPLPVVRGIQLSQGLSFAMSAVKYIRNVQDFAKSKVKGNRHWLGLDGLVLAIVCACFIIIVNGAGEESAEREANDHEE 226 (453)
Q Consensus 147 ~~IP~~Vv~G~~aGigl~i~~~ql~~~~g~~~~~~~~~l~~~~~~~~~~~~l~~~~l~~li~l~~~~~~~~~~~~~~~~~ 226 (453)
|++|+.|+-.+++.||+.++-.++++.-+.... -+..+ ...+.++++++++++++.
T Consensus 118 ~~~PpvviG~~i~~IGl~l~~~~~~~~~~~~~~-----~~~~~---~~~~~la~~tl~iii~~~---------------- 173 (429)
T 3qe7_A 118 VLFPPAAMGAIVAVIGLELAGVAAGMAGLLPAE-----GQTPD---SKTIIISITTLAVTVLGS---------------- 173 (429)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHHHHHHTSSCBT-----TBCCC---HHHHHHHHHHHHHHHHHH----------------
T ss_pred HHCCCeeeHHHHHHHHHHHHHHHHHhccccCCC-----Ccccc---HHHHHHHHHHHHHHHHHH----------------
Confidence 999988777789999999988888764321100 01112 236778888887776433
Q ss_pred cchhhhhhhhhcccchHHHHHHHHHHHHHHHhcCCccccc---ccCCCcccccccChhhhHHhHHhhhcchhHHHHHHHH
Q 037301 227 ERPKRSRLRRIVASLPSAFIVFLLGVILAFVRRPNVVKDI---NFGPSSIEVLKITKHAWKEGFIKGTIPQLPLSVLNSV 303 (453)
Q Consensus 227 ~~~~~~~~~r~~~~iP~aLi~vv~g~~l~~~~~~~~~~~i---~~g~~~P~~~~p~~~~~~~~~~~l~lp~l~ltll~sv 303 (453)
| +.|++. |.++.|+.+++++++++.++..+.+.+ ++ .++|++..|+|+ + .. +...++....++.+++
T Consensus 174 ----~-~~kg~~-~~~aiLigivvg~~~a~~~G~~d~~~v~~a~~-~~lP~~~~P~f~-~-~~-i~~i~~i~lV~~~Esl 243 (429)
T 3qe7_A 174 ----V-LFRGFL-AIIPILIGVLVGYALSFAMGIVDTTPIINAHW-FALPTLYTPRFE-W-FA-ILTILPAALVVIAEHV 243 (429)
T ss_dssp ----H-SSSTTT-TTHHHHHHHHHHHHHHHHHHHTTSSHHHHSCS-SCCCCCCCCCCC-H-HH-HHHHTHHHHHHHHHHH
T ss_pred ----H-Hhcccc-hhhHHHHHHHHHHHHHHHhcCCCccccccccc-ccccCCCCCccc-H-HH-HHHHHHHHHHHHHHHH
Confidence 1 112333 345799999999988877653222221 22 356776677664 2 12 2222232222233322
Q ss_pred ---HHHHHHHhhhCCCCCCCCChhHHHHhHHHHHhhhcCccccccccccccccccCCCcchHHHHHHHHHHHHHHHHhhh
Q 037301 304 ---IAVCKLSADLFPGKHFSATSVSVTVGLMNLVGCWFGAMPCCHGAGGLAGQYKFGGRSGGCVALLGAVKMVLGLVLGS 380 (453)
Q Consensus 304 ---ia~~~la~~~~~~~~~~~~~el~a~GlaNl~~~~fGg~p~~~s~~~sa~n~~~GaRT~la~v~~G~~~ll~~L~~~p 380 (453)
.+++....+.. +++.+.||++.++|++|+++++||++|.|...-....+...|.|||++.+++|+++++++++ |
T Consensus 244 g~~~av~~~~g~~~-~~~~~~~r~l~adGla~i~~glfGg~p~Tt~~en~g~i~~tg~~sr~~~~~ag~~lillgl~--p 320 (429)
T 3qe7_A 244 GHLVVTANIVKKDL-LRDPGLHRSMFANGLSTVISGFFGSTPNTTYGENIGVMAITRVYSTWVIGGAAIFAILLSCV--G 320 (429)
T ss_dssp HHHHHHHHHHTSCT-CCCCCHHHHHHHHHHHHHHHHHHTCCCEEECHHHHHHHHHHTBCCHHHHHHHHHHHHHHTCC--H
T ss_pred HHHHHHHHHhCCCC-CCCCCcchHHHHHHHHHHHHHhcCCCCcchHHHhHHHHHhcCCcchHHHHHHHHHHHHHHHH--H
Confidence 22222221111 24568899999999999999999999998755555555568999999999999999886643 4
Q ss_pred hHHHHHhhccHHHHHHHHHH-------HHHHHHH-hhcccccchhHHHHHHHHHHHHH----------HhHHHHHHHHHH
Q 037301 381 SLVMVLDQFPVGVLGVLLLF-------AGIELAM-ASRDMNSKEEFFVMLVCTSVSLV----------GSSAALGFVCGI 442 (453)
Q Consensus 381 ~~~~ll~~iP~a~LaalLi~-------~g~~L~~-~~~~~~~~~~~~v~~~t~~~~~~----------~~~l~~Gi~~Gi 442 (453)
.+..+++.||.+++|++.++ .|+++.. ...|.+++++.++.-+....++. ..++..|-+.++
T Consensus 321 k~~al~~~IP~~vlgg~~l~lfg~i~~~Gi~~l~~~~v~~~~~rn~~i~~~~l~~G~g~~~~~~~~~~~~gi~~~~~~ai 400 (429)
T 3qe7_A 321 KLAAAIQMIPLPVMGGVSLLLYGVIGASGIRVLIESKVDYNKAQNLILTSVILIIGVSGAKVNIGAAELKGMALATIVGI 400 (429)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSHHHHHHHHHHHHHHHHCCCCCSSSCCCCHHHHHHHHHH
T ss_pred HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHhhhhhccCcHHHHHHHHH
Confidence 56679999999999987432 3333331 11222344555555555444442 126777777777
Q ss_pred HHHHHHHh
Q 037301 443 VVHVLLKI 450 (453)
Q Consensus 443 ~v~~~l~~ 450 (453)
++..++..
T Consensus 401 ~ln~~l~~ 408 (429)
T 3qe7_A 401 GLSLIFKL 408 (429)
T ss_dssp HHHHHHTC
T ss_pred HHHHHhcC
Confidence 77777643
No 2
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=88.92 E-value=3.8 Score=41.99 Aligned_cols=89 Identities=17% Similarity=0.369 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHhhhh-HHHHHhhccHHHHHHHHHHHHHHHHHhhccc--------c--cchhHHHHHHHHHHHHH
Q 037301 362 GCVALLGAVKMVLGLVLGSS-LVMVLDQFPVGVLGVLLLFAGIELAMASRDM--------N--SKEEFFVMLVCTSVSLV 430 (453)
Q Consensus 362 la~v~~G~~~ll~~L~~~p~-~~~ll~~iP~a~LaalLi~~g~~L~~~~~~~--------~--~~~~~~v~~~t~~~~~~ 430 (453)
.+.++.|++++++++++... .-.+.+.+|..+.|..+..+|+++.....+. + +.....+.+++.+.++.
T Consensus 92 gavi~aGli~ill~~~~~~~g~~~l~~~~PpvviG~~i~~IGl~l~~~~~~~~~~~~~~~~~~~~~~~~la~~tl~iii~ 171 (429)
T 3qe7_A 92 GGFIMCGVLFCLVSFIVKKAGTGWLDVLFPPAAMGAIVAVIGLELAGVAAGMAGLLPAEGQTPDSKTIIISITTLAVTVL 171 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHTSSCBTTBCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHCCCeeeHHHHHHHHHHHHHHHHHhccccCCCCccccHHHHHHHHHHHHHHHH
Confidence 46677788887777764310 0138899999999999999999998753211 1 12344455566555543
Q ss_pred H----------hHHHHHHHHHHHHHHHHHh
Q 037301 431 G----------SSAALGFVCGIVVHVLLKI 450 (453)
Q Consensus 431 ~----------~~l~~Gi~~Gi~v~~~l~~ 450 (453)
+ .++.+|+++|.++++.+..
T Consensus 172 ~~~~~kg~~~~~aiLigivvg~~~a~~~G~ 201 (429)
T 3qe7_A 172 GSVLFRGFLAIIPILIGVLVGYALSFAMGI 201 (429)
T ss_dssp HHHSSSTTTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccchhhHHHHHHHHHHHHHHHhcC
Confidence 3 1788888888888877653
No 3
>1bts_A BAND 3 anion transport protein; transmembrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 1btt_A
Probab=22.71 E-value=38 Score=20.66 Aligned_cols=24 Identities=8% Similarity=0.230 Sum_probs=16.3
Q ss_pred CChhHHHHhHHHHHhhhcCccccc
Q 037301 321 ATSVSVTVGLMNLVGCWFGAMPCC 344 (453)
Q Consensus 321 ~~~el~a~GlaNl~~~~fGg~p~~ 344 (453)
.+...++++++.++-++|+|-|.+
T Consensus 3 v~E~i~s~ai~Gi~f~lf~gQPL~ 26 (26)
T 1bts_A 3 VSELLISTAVQGILFALLGAXXXX 26 (26)
T ss_dssp HHHHHHHHHHHHHHHHHTTC----
T ss_pred hhHHHHHHHHHHHHHHHHhcccCC
Confidence 345677889999999999998864
No 4
>2hfr_A Fowlicidin-3, cathelicidin; alpha helix, antimicrobial protein; NMR {Synthetic}
Probab=6.97 E-value=1.6e+02 Score=17.64 Aligned_cols=17 Identities=24% Similarity=0.348 Sum_probs=11.5
Q ss_pred hhcccchHHHHHHHHHH
Q 037301 236 RIVASLPSAFIVFLLGV 252 (453)
Q Consensus 236 r~~~~iP~aLi~vv~g~ 252 (453)
|+.+++|-++..+..|+
T Consensus 2 RF~P~vpvaintvaagi 18 (27)
T 2hfr_A 2 RFWPLVPVAINTVAAGI 18 (27)
T ss_dssp CSCSSSSSHHHHHHHHH
T ss_pred CccccCcceEEEeehhh
Confidence 56788887766665554
No 5
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=6.42 E-value=2.5e+02 Score=22.67 Aligned_cols=20 Identities=35% Similarity=0.481 Sum_probs=4.2
Q ss_pred CCCCCCCCCccccccCCCCCC
Q 037301 1 MESQNHHIPHYQTSQHSPETT 21 (453)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~ 21 (453)
|.|..||.-|+|..- .|+++
T Consensus 1 ~~~~~~~~~~~~~~~-~~~~~ 20 (106)
T 2eke_C 1 MGSSHHHHHHSQDPL-VPRGS 20 (106)
T ss_dssp ------------CCC-CCCCC
T ss_pred CCccccccccccCCC-cCCCc
Confidence 567788888888765 44444
No 6
>3jrt_A Integron cassette protein VPC_CASS2; mobIle metagenome, structural genomics, PSI-2 protein structure initiative; 2.30A {Vibrio paracholerae}
Probab=6.40 E-value=3.2e+02 Score=23.72 Aligned_cols=25 Identities=28% Similarity=0.721 Sum_probs=13.6
Q ss_pred ccccchhhhH----HHhHHHHHHHHHHHH
Q 037301 41 NLVFQSKWAE----INGAMGDLGTYIPIV 65 (453)
Q Consensus 41 ~~~~~~~~~e----~~g~l~~l~t~lPl~ 65 (453)
+...|..|.| ++|-++|++..+...
T Consensus 21 ~~~Mr~~~~E~~eIL~GLIgDLtiaV~vi 49 (192)
T 3jrt_A 21 GVKMSDKWIEIEEILSGLIGDLTIAVTVL 49 (192)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhHHHHHHHHHHhhccceeehhhH
Confidence 3444444544 567677776554443
No 7
>2v6z_M DNA polymerase epsilon subunit 2; DNA replication, DPOE2, transferase, AAA protein family; HET: DNA; NMR {Homo sapiens}
Probab=6.23 E-value=1.5e+02 Score=23.88 Aligned_cols=33 Identities=21% Similarity=0.369 Sum_probs=4.6
Q ss_pred CCCCCCCCCccccccCCCCCCCCCCCCCCcHHHHHHH
Q 037301 1 MESQNHHIPHYQTSQHSPETTNNSPTSSNSPAKIIHK 37 (453)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (453)
|.|..||.-|+|... +.+.+-..-+...++++.
T Consensus 1 ~~~~~~~~~~~~~~~----~~~~~~~~~M~~~rlrk~ 33 (99)
T 2v6z_M 1 MGSSHHHHHHSQDPN----SSSARLQVDMAPERLRSR 33 (99)
T ss_dssp ----------------------------CCHHHHHHH
T ss_pred CCCccccccccCCCC----ccchhhhhcccHHHHHHH
Confidence 566777777766433 223333344555555443
No 8
>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor, immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1
Probab=5.74 E-value=1.3e+02 Score=24.17 Aligned_cols=16 Identities=38% Similarity=0.559 Sum_probs=1.2
Q ss_pred CCCCCCCCCccccccC
Q 037301 1 MESQNHHIPHYQTSQH 16 (453)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (453)
||...||.-|+|..|.
T Consensus 1 ~~~~~~~~~~~~~~~~ 16 (122)
T 1hkf_A 1 MEGSHHHHHHSQAQSK 16 (122)
T ss_dssp --------------CC
T ss_pred CCccccccccchhccC
Confidence 6777888888888873
No 9
>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*
Probab=5.59 E-value=1.3e+02 Score=28.18 Aligned_cols=14 Identities=29% Similarity=0.389 Sum_probs=0.0
Q ss_pred CCCCCccccccCCC
Q 037301 5 NHHIPHYQTSQHSP 18 (453)
Q Consensus 5 ~~~~~~~~~~~~~~ 18 (453)
.||+||.|.+.|.+
T Consensus 3 ~~~~~~~~~~~~~~ 16 (293)
T 3grk_A 3 HHHHHHMGTLEAQT 16 (293)
T ss_dssp --------------
T ss_pred CCcccccCCcCccc
Confidence 58888777766543
No 10
>2fyu_K Ubiquinol-cytochrome C reductase complex 6.4 kDa; transmembrane helices, 11 protein complex, oxidoreductase; HET: HEM FDN; 2.26A {Bos taurus} SCOP: f.23.15.1 PDB: 1sqq_K* 1sqv_K* 1sqx_K* 1l0l_K* 1ntk_K* 1ntm_K* 1ntz_K* 1nu1_K* 1sqp_K* 1sqb_K* 1be3_K* 1bgy_K* 2ybb_K* 1l0n_K* 1qcr_K*
Probab=5.53 E-value=4.2e+02 Score=18.97 Aligned_cols=31 Identities=26% Similarity=0.332 Sum_probs=26.0
Q ss_pred HHHHhhCCHHHHHHHHHHHHHHHHHHhhhhhh
Q 037301 143 HLAYKLIPLPVVRGIQLSQGLSFAMSAVKYIR 174 (453)
Q Consensus 143 ~~l~~~IP~~Vv~G~~aGigl~i~~~ql~~~~ 174 (453)
+...+++|....-|..+|++++....+ +.++
T Consensus 12 ~~~~~w~psa~~~Gaaa~v~~ly~tdw-r~IL 42 (56)
T 2fyu_K 12 QLARNWVPTASLWGAVGAVGLVWATDW-RLIL 42 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC-HHHH
T ss_pred HHHHHHhhhhhhhhhhhhhheeeeccH-HHHH
Confidence 567889999999999999999988774 5554
Done!