Query 037301
Match_columns 453
No_of_seqs 224 out of 1332
Neff 6.7
Searched_HMMs 13730
Date Mon Mar 25 18:32:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037301.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/037301hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74e1 f.23.24.1 (E:1-32) Pet 19.7 65 0.0047 18.4 3.5 15 431-445 11-25 (32)
2 d2vv5a3 f.34.1.1 (A:27-112) Me 18.5 1.5E+02 0.011 20.6 7.4 45 48-92 39-83 (86)
3 d2vy4a1 g.37.1.7 (A:53-87) U11 12.1 11 0.00083 22.7 -1.3 14 3-16 9-22 (35)
4 d1jb0x_ f.23.20.1 (X:) Subunit 4.8 2.8E+02 0.021 15.3 2.6 20 359-378 6-25 (29)
5 d1uh6a_ d.15.1.1 (A:) Ubiquiti 3.4 3.2E+02 0.023 19.7 2.7 19 2-20 3-21 (100)
6 d2fyuk1 f.23.15.1 (K:1-53) Sub 2.2 5.6E+02 0.041 16.4 2.5 25 142-166 11-35 (53)
7 d2axtl1 f.23.31.1 (L:1-37) Pho 1.8 8.4E+02 0.061 14.2 2.8 9 434-442 17-25 (37)
8 d1r3jc_ f.14.1.1 (C:) Potassiu 1.6 1.3E+03 0.092 15.6 5.7 35 417-451 67-101 (103)
9 d3cuma1 a.100.1.1 (A:163-296) 1.5 1.2E+03 0.088 16.4 3.9 24 55-78 16-39 (134)
10 d1xj1a_ g.3.6.5 (A:) Vhv1.1, p 1.5 3.7E+02 0.027 16.6 0.4 7 8-14 3-9 (47)
No 1
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=19.69 E-value=65 Score=18.43 Aligned_cols=15 Identities=20% Similarity=0.297 Sum_probs=8.9
Q ss_pred HhHHHHHHHHHHHHH
Q 037301 431 GSSAALGFVCGIVVH 445 (453)
Q Consensus 431 ~~~l~~Gi~~Gi~v~ 445 (453)
+..++.|+.+|++..
T Consensus 11 fialffgiavgiifa 25 (32)
T d2e74e1 11 FIALFFGIAVGIIFA 25 (32)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhheee
Confidence 345666666666544
No 2
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=18.46 E-value=1.5e+02 Score=20.62 Aligned_cols=45 Identities=16% Similarity=0.152 Sum_probs=28.5
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHH
Q 037301 48 WAEINGAMGDLGTYIPIVLALTLAKDLDLGTTLIFTGIYNIVTGA 92 (453)
Q Consensus 48 ~~e~~g~l~~l~t~lPl~la~a~~aGlp~~~~l~~~gl~~iv~gl 92 (453)
..+.-..+.-....+=..+.....-|+|....+...|+.++..|+
T Consensus 39 ~~~~i~~~~~~~i~~i~~~~~L~~~Gi~~t~l~a~~G~~gvaiGf 83 (86)
T d2vv5a3 39 VADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLVVGL 83 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTCCSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 344433344444444444445566799999888888888888775
No 3
>d2vy4a1 g.37.1.7 (A:53-87) U11/U12 small nuclear ribonucleoprotein 48 kDa protein, U11-48K {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.13 E-value=11 Score=22.69 Aligned_cols=14 Identities=36% Similarity=0.781 Sum_probs=10.7
Q ss_pred CCCCCCCccccccC
Q 037301 3 SQNHHIPHYQTSQH 16 (453)
Q Consensus 3 ~~~~~~~~~~~~~~ 16 (453)
..|||.|.+..++|
T Consensus 9 D~nH~mPksSL~kH 22 (35)
T d2vy4a1 9 DSNHHMPKSSLAKH 22 (35)
T ss_dssp TSSCEECGGGHHHH
T ss_pred cccCcCcHHHHHHH
Confidence 35899997777776
No 4
>d1jb0x_ f.23.20.1 (X:) Subunit PsaX of photosystem I reaction centre {Synechococcus elongatus [TaxId: 32046]}
Probab=4.81 E-value=2.8e+02 Score=15.30 Aligned_cols=20 Identities=25% Similarity=0.140 Sum_probs=13.4
Q ss_pred cchHHHHHHHHHHHHHHHHh
Q 037301 359 RSGGCVALLGAVKMVLGLVL 378 (453)
Q Consensus 359 RT~la~v~~G~~~ll~~L~~ 378 (453)
||.|+-+..++=+++.+..|
T Consensus 6 rt~wa~lllainflvaayyf 25 (29)
T d1jb0x_ 6 RTFWAVLLLAINFLVAAYYF 25 (29)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77888777777666655443
No 5
>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.40 E-value=3.2e+02 Score=19.67 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=11.5
Q ss_pred CCCCCCCCccccccCCCCC
Q 037301 2 ESQNHHIPHYQTSQHSPET 20 (453)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~ 20 (453)
.|.+||+-|+-.....|++
T Consensus 3 ~~~~~~~~~ss~~~~~p~~ 21 (100)
T d1uh6a_ 3 GSSHHHHHHSSGASLVPRG 21 (100)
T ss_dssp CCCCCCCCCCCCCSSCCCC
T ss_pred CccccccccCCcccccCCC
Confidence 3677777766655544443
No 6
>d2fyuk1 f.23.15.1 (K:1-53) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.24 E-value=5.6e+02 Score=16.45 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=20.0
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHH
Q 037301 142 MHLAYKLIPLPVVRGIQLSQGLSFA 166 (453)
Q Consensus 142 ~~~l~~~IP~~Vv~G~~aGigl~i~ 166 (453)
.+...+++|..+.-|..+|+++.-.
T Consensus 11 ~~ia~~wips~~~~G~a~gl~lvy~ 35 (53)
T d2fyuk1 11 RQLARNWVPTASLWGAVGAVGLVWA 35 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhhhheeeeee
Confidence 3556788999999999999988653
No 7
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=1.76 E-value=8.4e+02 Score=14.17 Aligned_cols=9 Identities=22% Similarity=0.290 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 037301 434 AALGFVCGI 442 (453)
Q Consensus 434 l~~Gi~~Gi 442 (453)
+.||++.=+
T Consensus 17 Ly~GlLlif 25 (37)
T d2axtl1 17 LYLGLLLIL 25 (37)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 334433333
No 8
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=1.56 E-value=1.3e+03 Score=15.59 Aligned_cols=35 Identities=11% Similarity=-0.024 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 037301 417 EFFVMLVCTSVSLVGSSAALGFVCGIVVHVLLKIR 451 (453)
Q Consensus 417 ~~~v~~~t~~~~~~~~~l~~Gi~~Gi~v~~~l~~~ 451 (453)
..++..+..+.++..++...+.+.......--+.|
T Consensus 67 gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~~~rr 101 (103)
T d1r3jc_ 67 GRCVAVVVMVAGITSFGLVTAALATWFVGREQERR 101 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455555555555455555555444444333333
No 9
>d3cuma1 a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=1.48 E-value=1.2e+03 Score=16.37 Aligned_cols=24 Identities=21% Similarity=0.155 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhh
Q 037301 55 MGDLGTYIPIVLALTLAKDLDLGT 78 (453)
Q Consensus 55 l~~l~t~lPl~la~a~~aGlp~~~ 78 (453)
.....+.+-+++.++..+|+|+..
T Consensus 16 ~~~~~~a~aEal~la~~~Gld~~~ 39 (134)
T d3cuma1 16 LAVLMIGTAEAMALGVANGLEAKV 39 (134)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHH
Confidence 444557789999999999999986
No 10
>d1xj1a_ g.3.6.5 (A:) Vhv1.1, polydnaviral gene product {Campoletis sonorensis virus, CsIV [TaxId: 10484]}
Probab=1.46 E-value=3.7e+02 Score=16.63 Aligned_cols=7 Identities=57% Similarity=0.909 Sum_probs=3.8
Q ss_pred CCccccc
Q 037301 8 IPHYQTS 14 (453)
Q Consensus 8 ~~~~~~~ 14 (453)
|||||.-
T Consensus 3 I~~Y~~C 9 (47)
T d1xj1a_ 3 IGHYQKC 9 (47)
T ss_dssp CCSSEEC
T ss_pred cccHHHH
Confidence 5566543
Done!