BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037302
(408 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 112/377 (29%), Positives = 167/377 (44%), Gaps = 25/377 (6%)
Query: 21 LESIIIPYTLLSGRIPSEIGALSK-LEELALPYNSLTGTI-PAEIGSLRN-LVELDLSNN 77
L+ + + + SG +P + LS L L L N+ +G I P + +N L EL L NN
Sbjct: 342 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 401
Query: 78 ILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGX 137
G IP N +L +L L N L G IPSS+G+L+ L L L LN L G +PQE+
Sbjct: 402 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 461
Query: 138 XXXXXXXXXXXXXXTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKXXXXXXXXXX 197
TG IPS L + L+ + L+ N L G +PK +G ++
Sbjct: 462 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 521
Query: 198 XXTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGXXXXXXXXXXXXXXX---------- 247
+G IP+ +G LDL+ N + IP +
Sbjct: 522 SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMK 581
Query: 248 ------------XGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQL 295
G+ ++ L + ++ G PT ++ L++ YN L
Sbjct: 582 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML 641
Query: 296 SSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIP 355
S IP E+ + L L L HN +SG +P E+G+L L LDLS N ++G IP + +
Sbjct: 642 SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT 701
Query: 356 NISAVDLSKNNLSGVVP 372
++ +DLS NNLSG +P
Sbjct: 702 MLTEIDLSNNNLSGPIP 718
Score = 122 bits (306), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 118/384 (30%), Positives = 174/384 (45%), Gaps = 15/384 (3%)
Query: 20 NLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNIL 79
NLE + + S IP +G S L+ L + N L+G I + L L++S+N
Sbjct: 198 NLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 256
Query: 80 NGSIP-LEFGNLKDLDALRLRGNKLDGLIPSSI-GNLTNLTHLDLSLNQLSGRLPQEVGX 137
G IP L LK L L L NK G IP + G LT LDLS N G +P G
Sbjct: 257 VGPIPPLP---LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 313
Query: 138 XXXXXXXXXXXXXXTGPIP-STLYHLNQLSNLYLAYNNLVGPLPKEVGNMKXXXXXXX-X 195
+G +P TL + L L L++N G LP+ + N+
Sbjct: 314 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLS 373
Query: 196 XXXXTGPIPSTIGY--LNLGGKLDLSHNRLDSPIPPTIGXXXXXXXXXXXXXXXXGLLPR 253
+GPI + N +L L +N IPPT+ G +P
Sbjct: 374 SNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 433
Query: 254 EVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLV 313
+G+L L L L N L G IP + Y+ L +L L +N L+ IP L NC+ L +
Sbjct: 434 SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWIS 493
Query: 314 LSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPA 373
LS+N L+G +P IG L +L L LS+N +G IP++LG ++ +DL+ N +G +PA
Sbjct: 494 LSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 553
Query: 374 SV-----RIIPKLIVSENNLELEN 392
++ +I I + + ++N
Sbjct: 554 AMFKQSGKIAANFIAGKRYVYIKN 577
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 96/312 (30%), Positives = 140/312 (44%), Gaps = 7/312 (2%)
Query: 21 LESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILN 80
L S+ + + LSG IPS +G+LSKL +L L N L G IP E+ ++ L L L N L
Sbjct: 417 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 476
Query: 81 GSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGXXXX 140
G IP N +L+ + L N+L G IP IG L NL L LS N SG +P E+G
Sbjct: 477 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS 536
Query: 141 XXXXXXXXXXXTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGN--MKXXXXXXXXXXX 198
G IP+ ++ + +A N + G + N MK
Sbjct: 537 LIWLDLNTNLFNGTIPAAMFKQSG----KIAANFIAGKRYVYIKNDGMKKECHGAGNLLE 592
Query: 199 XTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGXXXXXXXXXXXXXXXXGLLPREVGNL 258
G + L+ +++ PT G +P+E+G++
Sbjct: 593 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM 652
Query: 259 KYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNT 318
YL L+L N++ GSIP +G L L L+L N+L IP + + L + LS+N
Sbjct: 653 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 712
Query: 319 LSGIVPPEIGNL 330
LSG + PE+G
Sbjct: 713 LSGPI-PEMGQF 723
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 104/426 (24%), Positives = 166/426 (38%), Gaps = 78/426 (18%)
Query: 42 LSKLEELALPYNSLTGTIPAEI-GSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRG 100
L L+ L+L N TG IP + G+ L LDLS N G++P FG+ L++L L
Sbjct: 265 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 324
Query: 101 NKLDGLIP-SSIGNLTNLTHLDLSLNQLSGRLPQEVGXXXXXXXXXXXXXX--------- 150
N G +P ++ + L LDLS N+ SG LP+ +
Sbjct: 325 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 384
Query: 151 ------------------XTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKXXXXX 192
TG IP TL + ++L +L+L++N L G +P +G++
Sbjct: 385 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 444
Query: 193 XXXXXXXTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGXXXXXXXXXXXXXXXXGLLP 252
G IP + Y+ L L N L IP + G +P
Sbjct: 445 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 504
Query: 253 REVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMN------- 305
+ +G L+ L L L N+ G+IP +G +L L+L N + +IP +
Sbjct: 505 KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAA 564
Query: 306 -------------------CSQLQNLV--------------------LSHNTLSGIVPPE 326
C NL+ ++ G P
Sbjct: 565 NFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 624
Query: 327 IGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASV---RIIPKLIV 383
N + LD+S+N ++G IP ++G +P + ++L N++SG +P V R + L +
Sbjct: 625 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDL 684
Query: 384 SENNLE 389
S N L+
Sbjct: 685 SSNKLD 690
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 95/404 (23%), Positives = 143/404 (35%), Gaps = 92/404 (22%)
Query: 74 LSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIP--SSIGNLTNLTH------------ 119
LSN+ +NGS+ F L +L L N L G + +S+G+ + L
Sbjct: 81 LSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 139
Query: 120 -------------LDLSLNQLSGRLPQEVGXXXXXXXXXXXXXXXTGPIPSTLYHLNQLS 166
LDLS N +SG VG +G S +++
Sbjct: 140 KVSGGLKLNSLEVLDLSANSISG--ANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV 197
Query: 167 NLYL---AYNNLVGPLPKEVGNMKXXXXXXXXXXXXTGPIPSTIGYLNLGGKLDLSHNRL 223
NL + NN +P +G+ +G I L++S N+
Sbjct: 198 NLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 256
Query: 224 DSPIPPTIGXXXXXXXXXXXXXXXXGLLPREV-GNLKYLDSLSLDGNNLIGSIPPTIG-- 280
PIPP G +P + G L L L GN+ G++PP G
Sbjct: 257 VGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSC 314
Query: 281 -----------------------YLTNLTSLNLGYNQLSSSIPPELMNCSQ--------- 308
+ L L+L +N+ S +P L N S
Sbjct: 315 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSS 374
Query: 309 ------------------LQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQ 350
LQ L L +N +G +PP + N + L L LS N+++GTIPS
Sbjct: 375 NNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS 434
Query: 351 LGYIPNISAVDLSKNNLSGVVPAS---VRIIPKLIVSENNLELE 391
LG + + + L N L G +P V+ + LI+ N+L E
Sbjct: 435 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGE 478
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 87/326 (26%), Positives = 122/326 (37%), Gaps = 52/326 (15%)
Query: 115 TNLTHLDLSLNQLSGRLPQEVGXXXXXXXXXXXXXXXTGPIPSTL---YHLNQLSNLYLA 171
+LT LDLS N LSG + T P + LN L L L+
Sbjct: 97 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 156
Query: 172 YNNLVGP------LPKEVGNMKXXXXXXXXXXXXTGPIPSTIGYLNLGGKLDLSHNRLDS 225
N++ G L G +K +G + + +NL LD+S N +
Sbjct: 157 ANSISGANVVGWVLSDGCGELK---HLAISGNKISGDVDVS-RCVNL-EFLDVSSNNFST 211
Query: 226 PIPPTIGXXXXXXXXXXXXXXXXGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNL 285
I P +G G R + L L++ N +G IPP L +L
Sbjct: 212 GI-PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSL 268
Query: 286 TSLNLGYNQLSSSIPPELMN-CSQLQNLVLSHNTLSGIVPPEIG---------------- 328
L+L N+ + IP L C L L LS N G VPP G
Sbjct: 269 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 328
Query: 329 ---------NLTHLRQLDLSHNFINGTIPSQLGYIPNISA----VDLSKNNLSGVVPASV 375
+ L+ LDLS N +G +P L N+SA +DLS NN SG + ++
Sbjct: 329 GELPMDTLLKMRGLKVLDLSFNEFSGELPESL---TNLSASLLTLDLSSNNFSGPILPNL 385
Query: 376 RIIPKLIVSENNLELENSTSSENAPP 401
PK + E L L+N+ + PP
Sbjct: 386 CQNPKNTLQE--LYLQNNGFTGKIPP 409
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 112/377 (29%), Positives = 167/377 (44%), Gaps = 25/377 (6%)
Query: 21 LESIIIPYTLLSGRIPSEIGALSK-LEELALPYNSLTGTI-PAEIGSLRN-LVELDLSNN 77
L+ + + + SG +P + LS L L L N+ +G I P + +N L EL L NN
Sbjct: 345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 404
Query: 78 ILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGX 137
G IP N +L +L L N L G IPSS+G+L+ L L L LN L G +PQE+
Sbjct: 405 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 464
Query: 138 XXXXXXXXXXXXXXTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKXXXXXXXXXX 197
TG IPS L + L+ + L+ N L G +PK +G ++
Sbjct: 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 524
Query: 198 XXTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGXXXXXXXXXXXXXXX---------- 247
+G IP+ +G LDL+ N + IP +
Sbjct: 525 SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMK 584
Query: 248 ------------XGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQL 295
G+ ++ L + ++ G PT ++ L++ YN L
Sbjct: 585 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML 644
Query: 296 SSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIP 355
S IP E+ + L L L HN +SG +P E+G+L L LDLS N ++G IP + +
Sbjct: 645 SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT 704
Query: 356 NISAVDLSKNNLSGVVP 372
++ +DLS NNLSG +P
Sbjct: 705 MLTEIDLSNNNLSGPIP 721
Score = 122 bits (306), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 173/383 (45%), Gaps = 13/383 (3%)
Query: 20 NLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNIL 79
NLE + + S IP +G S L+ L + N L+G I + L L++S+N
Sbjct: 201 NLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 259
Query: 80 NGSIPLEFGNLKDLDALRLRGNKLDGLIPSSI-GNLTNLTHLDLSLNQLSGRLPQEVGXX 138
G IP LK L L L NK G IP + G LT LDLS N G +P G
Sbjct: 260 VGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSC 317
Query: 139 XXXXXXXXXXXXXTGPIP-STLYHLNQLSNLYLAYNNLVGPLPKEVGNMKXXXXXXX-XX 196
+G +P TL + L L L++N G LP+ + N+
Sbjct: 318 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSS 377
Query: 197 XXXTGPIPSTIGY--LNLGGKLDLSHNRLDSPIPPTIGXXXXXXXXXXXXXXXXGLLPRE 254
+GPI + N +L L +N IPPT+ G +P
Sbjct: 378 NNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS 437
Query: 255 VGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVL 314
+G+L L L L N L G IP + Y+ L +L L +N L+ IP L NC+ L + L
Sbjct: 438 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISL 497
Query: 315 SHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPAS 374
S+N L+G +P IG L +L L LS+N +G IP++LG ++ +DL+ N +G +PA+
Sbjct: 498 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 557
Query: 375 V-----RIIPKLIVSENNLELEN 392
+ +I I + + ++N
Sbjct: 558 MFKQSGKIAANFIAGKRYVYIKN 580
Score = 115 bits (288), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 96/312 (30%), Positives = 140/312 (44%), Gaps = 7/312 (2%)
Query: 21 LESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILN 80
L S+ + + LSG IPS +G+LSKL +L L N L G IP E+ ++ L L L N L
Sbjct: 420 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 479
Query: 81 GSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGXXXX 140
G IP N +L+ + L N+L G IP IG L NL L LS N SG +P E+G
Sbjct: 480 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS 539
Query: 141 XXXXXXXXXXXTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGN--MKXXXXXXXXXXX 198
G IP+ ++ + +A N + G + N MK
Sbjct: 540 LIWLDLNTNLFNGTIPAAMFKQSG----KIAANFIAGKRYVYIKNDGMKKECHGAGNLLE 595
Query: 199 XTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGXXXXXXXXXXXXXXXXGLLPREVGNL 258
G + L+ +++ PT G +P+E+G++
Sbjct: 596 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM 655
Query: 259 KYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNT 318
YL L+L N++ GSIP +G L L L+L N+L IP + + L + LS+N
Sbjct: 656 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715
Query: 319 LSGIVPPEIGNL 330
LSG + PE+G
Sbjct: 716 LSGPI-PEMGQF 726
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 105/426 (24%), Positives = 166/426 (38%), Gaps = 78/426 (18%)
Query: 42 LSKLEELALPYNSLTGTIPAEI-GSLRNLVELDLSNNILNGSIPLEFG------------ 88
L L+ L+L N TG IP + G+ L LDLS N G++P FG
Sbjct: 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 327
Query: 89 -------------NLKDLDALRLRGNKLDGLIPSSIGNLT-NLTHLDLSLNQLSGRLPQE 134
++ L L L N+ G +P S+ NL+ +L LDLS N SG +
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387
Query: 135 VGX--XXXXXXXXXXXXXXTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKXXXXX 192
+ TG IP TL + ++L +L+L++N L G +P +G++
Sbjct: 388 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 447
Query: 193 XXXXXXXTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGXXXXXXXXXXXXXXXXGLLP 252
G IP + Y+ L L N L IP + G +P
Sbjct: 448 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 507
Query: 253 REVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMN------- 305
+ +G L+ L L L N+ G+IP +G +L L+L N + +IP +
Sbjct: 508 KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAA 567
Query: 306 -------------------CSQLQNLV--------------------LSHNTLSGIVPPE 326
C NL+ ++ G P
Sbjct: 568 NFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 627
Query: 327 IGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASV---RIIPKLIV 383
N + LD+S+N ++G IP ++G +P + ++L N++SG +P V R + L +
Sbjct: 628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDL 687
Query: 384 SENNLE 389
S N L+
Sbjct: 688 SSNKLD 693
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 95/404 (23%), Positives = 143/404 (35%), Gaps = 92/404 (22%)
Query: 74 LSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIP--SSIGNLTNLTH------------ 119
LSN+ +NGS+ F L +L L N L G + +S+G+ + L
Sbjct: 84 LSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 142
Query: 120 -------------LDLSLNQLSGRLPQEVGXXXXXXXXXXXXXXXTGPIPSTLYHLNQLS 166
LDLS N +SG VG +G S +++
Sbjct: 143 KVSGGLKLNSLEVLDLSANSISG--ANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV 200
Query: 167 NLYL---AYNNLVGPLPKEVGNMKXXXXXXXXXXXXTGPIPSTIGYLNLGGKLDLSHNRL 223
NL + NN +P +G+ +G I L++S N+
Sbjct: 201 NLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 259
Query: 224 DSPIPPTIGXXXXXXXXXXXXXXXXGLLPREV-GNLKYLDSLSLDGNNLIGSIPPTIG-- 280
PIPP G +P + G L L L GN+ G++PP G
Sbjct: 260 VGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSC 317
Query: 281 -----------------------YLTNLTSLNLGYNQLSSSIPPELMNCSQ--------- 308
+ L L+L +N+ S +P L N S
Sbjct: 318 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSS 377
Query: 309 ------------------LQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQ 350
LQ L L +N +G +PP + N + L L LS N+++GTIPS
Sbjct: 378 NNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS 437
Query: 351 LGYIPNISAVDLSKNNLSGVVPAS---VRIIPKLIVSENNLELE 391
LG + + + L N L G +P V+ + LI+ N+L E
Sbjct: 438 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGE 481
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 87/326 (26%), Positives = 122/326 (37%), Gaps = 52/326 (15%)
Query: 115 TNLTHLDLSLNQLSGRLPQEVGXXXXXXXXXXXXXXXTGPIPSTL---YHLNQLSNLYLA 171
+LT LDLS N LSG + T P + LN L L L+
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 159
Query: 172 YNNLVGP------LPKEVGNMKXXXXXXXXXXXXTGPIPSTIGYLNLGGKLDLSHNRLDS 225
N++ G L G +K +G + + +NL LD+S N +
Sbjct: 160 ANSISGANVVGWVLSDGCGELK---HLAISGNKISGDVDVS-RCVNL-EFLDVSSNNFST 214
Query: 226 PIPPTIGXXXXXXXXXXXXXXXXGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNL 285
I P +G G R + L L++ N +G IPP L +L
Sbjct: 215 GI-PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSL 271
Query: 286 TSLNLGYNQLSSSIPPELMN-CSQLQNLVLSHNTLSGIVPPEIG---------------- 328
L+L N+ + IP L C L L LS N G VPP G
Sbjct: 272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 331
Query: 329 ---------NLTHLRQLDLSHNFINGTIPSQLGYIPNISA----VDLSKNNLSGVVPASV 375
+ L+ LDLS N +G +P L N+SA +DLS NN SG + ++
Sbjct: 332 GELPMDTLLKMRGLKVLDLSFNEFSGELPESL---TNLSASLLTLDLSSNNFSGPILPNL 388
Query: 376 RIIPKLIVSENNLELENSTSSENAPP 401
PK + E L L+N+ + PP
Sbjct: 389 CQNPKNTLQE--LYLQNNGFTGKIPP 412
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 78.6 bits (192), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 104/221 (47%), Gaps = 4/221 (1%)
Query: 154 PIPSTLYHLNQLSNLYLA-YNNLVGPLPKEVGNMKXXXXXXXXXXXXTGPIPSTIGYLNL 212
PIPS+L +L L+ LY+ NNLVGP+P + + +G IP + +
Sbjct: 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126
Query: 213 GGKLDLSHNRLDSPIPPTIGXXXXXXXXXXXXXXXXGLLPREVGNL-KYLDSLSLDGNNL 271
LD S+N L +PP+I G +P G+ K S+++ N L
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186
Query: 272 IGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLT 331
G IPPT L NL ++L N L + Q + L+ N+L+ + ++G
Sbjct: 187 TGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSK 244
Query: 332 HLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVP 372
+L LDL +N I GT+P L + + ++++S NNL G +P
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 107/247 (43%), Gaps = 51/247 (20%)
Query: 31 LSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNL 90
L G IP I L++L L + + +++G IP + ++ LV LD S N L+G++P +L
Sbjct: 89 LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148
Query: 91 KDLDALRLRGNKLDGLIPSSIGNLTNL-THLDLSLNQLSGRLPQEVGXXXXXXXXXXXXX 149
+L + GN++ G IP S G+ + L T + +S N+L+G+
Sbjct: 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK------------------- 189
Query: 150 XXTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKXXXXXXXXXXXXTGPIPSTIGY 209
IP T +LN L+ + L+ N L G G+ K +
Sbjct: 190 -----IPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS 243
Query: 210 LNLGGKLDLSHNRLDSPIPPTIGXXXXXXXXXXXXXXXXGLLPREVGNLKYLDSLSLDGN 269
NL G LDL +NR+ G LP+ + LK+L SL++ N
Sbjct: 244 KNLNG-LDLRNNRI------------------------YGTLPQGLTQLKFLHSLNVSFN 278
Query: 270 NLIGSIP 276
NL G IP
Sbjct: 279 NLCGEIP 285
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 63/135 (46%), Gaps = 25/135 (18%)
Query: 251 LPREVGNLKYLDSLSLDG-NNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQL 309
+P + NL YL+ L + G NNL+G IPP I LT QL
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT------------------------QL 103
Query: 310 QNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSG 369
L ++H +SG +P + + L LD S+N ++GT+P + +PN+ + N +SG
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163
Query: 370 VVPASVRIIPKLIVS 384
+P S KL S
Sbjct: 164 AIPDSYGSFSKLFTS 178
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 64/139 (46%), Gaps = 25/139 (17%)
Query: 19 PNLESIIIPYTLLSGRIPSEIGALSKL-EELALPYNSLTGTIPAEIGSLRNLVELDLSNN 77
PNL I +SG IP G+ SKL + + N LTG IP +L NL +DLS N
Sbjct: 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRN 207
Query: 78 ILNGSIPLEFGN-----------------------LKDLDALRLRGNKLDGLIPSSIGNL 114
+L G + FG+ K+L+ L LR N++ G +P + L
Sbjct: 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQL 267
Query: 115 TNLTHLDLSLNQLSGRLPQ 133
L L++S N L G +PQ
Sbjct: 268 KFLHSLNVSFNNLCGEIPQ 286
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 89/220 (40%), Gaps = 4/220 (1%)
Query: 83 IPLEFGNLKDLDALRLRG-NKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGXXXXX 141
IP NL L+ L + G N L G IP +I LT L +L ++ +SG +P +
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 142 XXXXXXXXXXTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNM-KXXXXXXXXXXXXT 200
+G +P ++ L L + N + G +P G+ K T
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 201 GPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGXXXXXXXXXXXXXXXXGLLPREVGNLKY 260
G IP T LNL +DLS N L+ G L + VG K
Sbjct: 188 GKIPPTFANLNLA-FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKN 245
Query: 261 LDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIP 300
L+ L L N + G++P + L L SLN+ +N L IP
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 74/137 (54%), Gaps = 13/137 (9%)
Query: 255 VGNLKYLDSLSLDGNNL--IGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNL 312
+G L LD LSL+GN L IG T+ LTNLT L+L NQ+S+ P L ++L L
Sbjct: 212 LGILTNLDELSLNGNQLKDIG----TLASLTNLTDLDLANNQISNLAP--LSGLTKLTEL 265
Query: 313 VLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVP 372
L N +S I P + LT L L+L+ N + P + + N++ + L NN+S + P
Sbjct: 266 KLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 321
Query: 373 -ASVRIIPKLIVSENNL 388
+S+ + +L S N +
Sbjct: 322 VSSLTKLQRLFFSNNKV 338
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 61/115 (53%), Gaps = 8/115 (6%)
Query: 18 FPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNN 77
NLES+I +S P +G L+ L+EL+L N L + SL NL +LDL+NN
Sbjct: 193 LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANN 248
Query: 78 ILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLP 132
++ PL L L L+L N++ + P + LT LT+L+L+ NQL P
Sbjct: 249 QISNLAPL--SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP 299
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 6/92 (6%)
Query: 279 IGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDL 338
+ YL NLT +N NQL+ P L N ++L ++++++N ++ I P + NLT+L L L
Sbjct: 59 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 114
Query: 339 SHNFINGTIPSQLGYIPNISAVDLSKNNLSGV 370
+N I P L + N++ ++LS N +S +
Sbjct: 115 FNNQITDIDP--LKNLTNLNRLELSSNTISDI 144
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 6/94 (6%)
Query: 39 IGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRL 98
+ L+ LE L + N ++ + + L NL L +NN ++ PL G L +LD L L
Sbjct: 168 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPL--GILTNLDELSL 223
Query: 99 RGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLP 132
GN+L + ++ +LTNLT LDL+ NQ+S P
Sbjct: 224 NGNQLKDI--GTLASLTNLTDLDLANNQISNLAP 255
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 56/123 (45%), Gaps = 24/123 (19%)
Query: 269 NNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPE-- 326
NN I I P + LTNLT L L NQ++ P L N + L L LS NT+S I
Sbjct: 94 NNQIADITP-LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGL 150
Query: 327 -----------------IGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSG 369
+ NLT L +LD+S N ++ S L + N+ ++ + N +S
Sbjct: 151 TSLQQLNFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISD 208
Query: 370 VVP 372
+ P
Sbjct: 209 ITP 211
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Query: 66 LRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLN 125
L NL +++ SNN L PL+ NL L + + N++ + P + NLTNLT L L N
Sbjct: 62 LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 126 QLS 128
Q++
Sbjct: 118 QIT 120
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 48/114 (42%), Gaps = 24/114 (21%)
Query: 39 IGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRL 98
+ L+KL EL L N ++ P + L L L+L+ N L P+ NLK+L L L
Sbjct: 256 LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPI--SNLKNLTYLTL 311
Query: 99 RGNKLDGLIP--------------------SSIGNLTNLTHLDLSLNQLSGRLP 132
N + + P SS+ NLTN+ L NQ+S P
Sbjct: 312 YFNNISDISPVSSLTKLQRLFFSNNKVSDVSSLANLTNINWLSAGHNQISDLTP 365
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 74/137 (54%), Gaps = 13/137 (9%)
Query: 255 VGNLKYLDSLSLDGNNL--IGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNL 312
+G L LD LSL+GN L IG T+ LTNLT L+L NQ+S+ P L ++L L
Sbjct: 213 LGILTNLDELSLNGNQLKDIG----TLASLTNLTDLDLANNQISNLAP--LSGLTKLTEL 266
Query: 313 VLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVP 372
L N +S I P + LT L L+L+ N + P + + N++ + L NN+S + P
Sbjct: 267 KLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 322
Query: 373 -ASVRIIPKLIVSENNL 388
+S+ + +L S N +
Sbjct: 323 VSSLTKLQRLFFSNNKV 339
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 61/115 (53%), Gaps = 8/115 (6%)
Query: 18 FPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNN 77
NLES+I +S P +G L+ L+EL+L N L + SL NL +LDL+NN
Sbjct: 194 LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANN 249
Query: 78 ILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLP 132
++ PL L L L+L N++ + P + LT LT+L+L+ NQL P
Sbjct: 250 QISNLAPL--SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP 300
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 6/92 (6%)
Query: 279 IGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDL 338
+ YL NLT +N NQL+ P L N ++L ++++++N ++ I P + NLT+L L L
Sbjct: 59 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 114
Query: 339 SHNFINGTIPSQLGYIPNISAVDLSKNNLSGV 370
+N I P L + N++ ++LS N +S +
Sbjct: 115 FNNQITDIDP--LKNLTNLNRLELSSNTISDI 144
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 6/94 (6%)
Query: 39 IGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRL 98
+ L+ LE L + N ++ + + L NL L +NN ++ PL G L +LD L L
Sbjct: 169 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPL--GILTNLDELSL 224
Query: 99 RGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLP 132
GN+L + ++ +LTNLT LDL+ NQ+S P
Sbjct: 225 NGNQLKDI--GTLASLTNLTDLDLANNQISNLAP 256
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 59/118 (50%), Gaps = 8/118 (6%)
Query: 255 VGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVL 314
+ NL L L+L NN I I P + LTNL L L N +S L + LQ L
Sbjct: 103 LANLTNLTGLTL-FNNQITDIDP-LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF 158
Query: 315 SHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVP 372
S N ++ + P + NLT L +LD+S N ++ S L + N+ ++ + N +S + P
Sbjct: 159 SSNQVTDLKP--LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP 212
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 66 LRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLN 125
L NL +++ SNN L PL+ NL L + + N++ + P + NLTNLT L L N
Sbjct: 62 LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 126 QLSGRLP 132
Q++ P
Sbjct: 118 QITDIDP 124
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 48/114 (42%), Gaps = 24/114 (21%)
Query: 39 IGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRL 98
+ L+KL EL L N ++ P + L L L+L+ N L P+ NLK+L L L
Sbjct: 257 LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPI--SNLKNLTYLTL 312
Query: 99 RGNKLDGLIP--------------------SSIGNLTNLTHLDLSLNQLSGRLP 132
N + + P SS+ NLTN+ L NQ+S P
Sbjct: 313 YFNNISDISPVSSLTKLQRLFFSNNKVSDVSSLANLTNINWLSAGHNQISDLTP 366
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 66/122 (54%), Gaps = 12/122 (9%)
Query: 255 VGNLKYLDSLSLDGNNL--IGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNL 312
+G L LD LSL+GN L IG T+ LTNLT L+L NQ+S+ P L ++L L
Sbjct: 217 LGILTNLDELSLNGNQLKDIG----TLASLTNLTDLDLANNQISNLAP--LSGLTKLTEL 270
Query: 313 VLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVP 372
L N +S I P + LT L L+L+ N + P + + N++ + L NN+S + P
Sbjct: 271 KLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 326
Query: 373 AS 374
S
Sbjct: 327 VS 328
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 61/115 (53%), Gaps = 8/115 (6%)
Query: 18 FPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNN 77
NLES+I +S P +G L+ L+EL+L N L + SL NL +LDL+NN
Sbjct: 198 LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANN 253
Query: 78 ILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLP 132
++ PL L L L+L N++ + P + LT LT+L+L+ NQL P
Sbjct: 254 QISNLAPL--SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP 304
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 6/92 (6%)
Query: 279 IGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDL 338
+ YL NLT +N NQL+ P L N ++L ++++++N ++ I P + NLT+L L L
Sbjct: 64 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 119
Query: 339 SHNFINGTIPSQLGYIPNISAVDLSKNNLSGV 370
+N I P L + N++ ++LS N +S +
Sbjct: 120 FNNQITDIDP--LKNLTNLNRLELSSNTISDI 149
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 6/94 (6%)
Query: 39 IGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRL 98
+ L+ LE L + N ++ + + L NL L +NN ++ PL G L +LD L L
Sbjct: 173 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPL--GILTNLDELSL 228
Query: 99 RGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLP 132
GN+L + ++ +LTNLT LDL+ NQ+S P
Sbjct: 229 NGNQLKDI--GTLASLTNLTDLDLANNQISNLAP 260
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 56/123 (45%), Gaps = 24/123 (19%)
Query: 269 NNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVP---- 324
NN I I P + LTNLT L L NQ++ P L N + L L LS NT+S I
Sbjct: 99 NNQIADITP-LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGL 155
Query: 325 ---------------PEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSG 369
+ NLT L +LD+S N ++ S L + N+ ++ + N +S
Sbjct: 156 TSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISD 213
Query: 370 VVP 372
+ P
Sbjct: 214 ITP 216
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Query: 66 LRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLN 125
L NL +++ SNN L PL+ NL L + + N++ + P + NLTNLT L L N
Sbjct: 67 LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 122
Query: 126 QLS 128
Q++
Sbjct: 123 QIT 125
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 48/114 (42%), Gaps = 24/114 (21%)
Query: 39 IGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRL 98
+ L+KL EL L N ++ P + L L L+L+ N L P+ NLK+L L L
Sbjct: 261 LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPI--SNLKNLTYLTL 316
Query: 99 RGNKLDGLIP--------------------SSIGNLTNLTHLDLSLNQLSGRLP 132
N + + P SS+ NLTN+ L NQ+S P
Sbjct: 317 YFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP 370
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 66/122 (54%), Gaps = 12/122 (9%)
Query: 255 VGNLKYLDSLSLDGNNL--IGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNL 312
+G L LD LSL+GN L IG T+ LTNLT L+L NQ+S+ P L ++L L
Sbjct: 216 LGILTNLDELSLNGNQLKDIG----TLASLTNLTDLDLANNQISNLAP--LSGLTKLTEL 269
Query: 313 VLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVP 372
L N +S I P + LT L L+L+ N + P + + N++ + L NN+S + P
Sbjct: 270 KLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 325
Query: 373 AS 374
S
Sbjct: 326 VS 327
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 61/115 (53%), Gaps = 8/115 (6%)
Query: 18 FPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNN 77
NLES+I +S P +G L+ L+EL+L N L + SL NL +LDL+NN
Sbjct: 197 LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANN 252
Query: 78 ILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLP 132
++ PL L L L+L N++ + P + LT LT+L+L+ NQL P
Sbjct: 253 QISNLAPL--SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP 303
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 6/92 (6%)
Query: 279 IGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDL 338
+ YL NLT +N NQL+ P L N ++L ++++++N ++ I P + NLT+L L L
Sbjct: 63 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 118
Query: 339 SHNFINGTIPSQLGYIPNISAVDLSKNNLSGV 370
+N I P L + N++ ++LS N +S +
Sbjct: 119 FNNQITDIDP--LKNLTNLNRLELSSNTISDI 148
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 6/94 (6%)
Query: 39 IGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRL 98
+ L+ LE L + N ++ + + L NL L +NN ++ PL G L +LD L L
Sbjct: 172 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPL--GILTNLDELSL 227
Query: 99 RGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLP 132
GN+L + ++ +LTNLT LDL+ NQ+S P
Sbjct: 228 NGNQLKDI--GTLASLTNLTDLDLANNQISNLAP 259
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 56/123 (45%), Gaps = 24/123 (19%)
Query: 269 NNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVP---- 324
NN I I P + LTNLT L L NQ++ P L N + L L LS NT+S I
Sbjct: 98 NNQIADITP-LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGL 154
Query: 325 ---------------PEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSG 369
+ NLT L +LD+S N ++ S L + N+ ++ + N +S
Sbjct: 155 TSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISD 212
Query: 370 VVP 372
+ P
Sbjct: 213 ITP 215
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Query: 66 LRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLN 125
L NL +++ SNN L PL+ NL L + + N++ + P + NLTNLT L L N
Sbjct: 66 LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 121
Query: 126 QLS 128
Q++
Sbjct: 122 QIT 124
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 48/114 (42%), Gaps = 24/114 (21%)
Query: 39 IGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRL 98
+ L+KL EL L N ++ P + L L L+L+ N L P+ NLK+L L L
Sbjct: 260 LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPI--SNLKNLTYLTL 315
Query: 99 RGNKLDGLIP--------------------SSIGNLTNLTHLDLSLNQLSGRLP 132
N + + P SS+ NLTN+ L NQ+S P
Sbjct: 316 YFNNISDISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLTP 369
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 66/122 (54%), Gaps = 12/122 (9%)
Query: 255 VGNLKYLDSLSLDGNNL--IGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNL 312
+G L LD LSL+GN L IG T+ LTNLT L+L NQ+S+ P L ++L L
Sbjct: 213 LGILTNLDELSLNGNQLKDIG----TLASLTNLTDLDLANNQISNLAP--LSGLTKLTEL 266
Query: 313 VLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVP 372
L N +S I P + LT L L+L+ N + P + + N++ + L NN+S + P
Sbjct: 267 KLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 322
Query: 373 AS 374
S
Sbjct: 323 VS 324
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 61/115 (53%), Gaps = 8/115 (6%)
Query: 18 FPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNN 77
NLES+I +S P +G L+ L+EL+L N L + SL NL +LDL+NN
Sbjct: 194 LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANN 249
Query: 78 ILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLP 132
++ PL L L L+L N++ + P + LT LT+L+L+ NQL P
Sbjct: 250 QISNLAPL--SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP 300
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 6/92 (6%)
Query: 279 IGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDL 338
+ YL NLT +N NQL+ P L N ++L ++++++N ++ I P + NLT+L L L
Sbjct: 59 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 114
Query: 339 SHNFINGTIPSQLGYIPNISAVDLSKNNLSGV 370
+N I P L + N++ ++LS N +S +
Sbjct: 115 FNNQITDIDP--LKNLTNLNRLELSSNTISDI 144
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 6/94 (6%)
Query: 39 IGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRL 98
+ L+ LE L + N ++ + + L NL L +NN ++ PL G L +LD L L
Sbjct: 169 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPL--GILTNLDELSL 224
Query: 99 RGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLP 132
GN+L + ++ +LTNLT LDL+ NQ+S P
Sbjct: 225 NGNQLKDI--GTLASLTNLTDLDLANNQISNLAP 256
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 59/118 (50%), Gaps = 8/118 (6%)
Query: 255 VGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVL 314
+ NL L L+L NN I I P + LTNL L L N +S L + LQ L
Sbjct: 103 LANLTNLTGLTL-FNNQITDIDP-LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF 158
Query: 315 SHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVP 372
S N ++ + P + NLT L +LD+S N ++ S L + N+ ++ + N +S + P
Sbjct: 159 SSNQVTDLKP--LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP 212
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 66 LRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLN 125
L NL +++ SNN L PL+ NL L + + N++ + P + NLTNLT L L N
Sbjct: 62 LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 126 QLSGRLP 132
Q++ P
Sbjct: 118 QITDIDP 124
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 48/114 (42%), Gaps = 24/114 (21%)
Query: 39 IGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRL 98
+ L+KL EL L N ++ P + L L L+L+ N L P+ NLK+L L L
Sbjct: 257 LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPI--SNLKNLTYLTL 312
Query: 99 RGNKLDGLIP--------------------SSIGNLTNLTHLDLSLNQLSGRLP 132
N + + P SS+ NLTN+ L NQ+S P
Sbjct: 313 YFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP 366
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 39 IGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRL 98
+ L+ L L L N +T P + +L NL L+LS+N ++ L L L L
Sbjct: 103 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISAL--SGLTSLQQLSF 158
Query: 99 RGNKLDGLIPSSIGNLTNLTHLDLSLNQLS 128
N++ L P + NLT L LD+S N++S
Sbjct: 159 SSNQVTDLKP--LANLTTLERLDISSNKVS 186
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 66/122 (54%), Gaps = 12/122 (9%)
Query: 255 VGNLKYLDSLSLDGNNL--IGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNL 312
+G L LD LSL+GN L IG T+ LTNLT L+L NQ+S+ P L ++L L
Sbjct: 213 LGILTNLDELSLNGNQLKDIG----TLASLTNLTDLDLANNQISNLAP--LSGLTKLTEL 266
Query: 313 VLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVP 372
L N +S I P + LT L L+L+ N + P + + N++ + L NN+S + P
Sbjct: 267 KLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 322
Query: 373 AS 374
S
Sbjct: 323 VS 324
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 61/115 (53%), Gaps = 8/115 (6%)
Query: 18 FPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNN 77
NLES+I +S P +G L+ L+EL+L N L + SL NL +LDL+NN
Sbjct: 194 LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANN 249
Query: 78 ILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLP 132
++ PL L L L+L N++ + P + LT LT+L+L+ NQL P
Sbjct: 250 QISNLAPL--SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP 300
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 6/92 (6%)
Query: 279 IGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDL 338
+ YL NLT +N NQL+ P L N ++L ++++++N ++ I P + NLT+L L L
Sbjct: 59 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 114
Query: 339 SHNFINGTIPSQLGYIPNISAVDLSKNNLSGV 370
+N I P L + N++ ++LS N +S +
Sbjct: 115 FNNQITDIDP--LKNLTNLNRLELSSNTISDI 144
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 6/94 (6%)
Query: 39 IGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRL 98
+ L+ LE L + N ++ + + L NL L +NN ++ PL G L +LD L L
Sbjct: 169 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPL--GILTNLDELSL 224
Query: 99 RGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLP 132
GN+L + ++ +LTNLT LDL+ NQ+S P
Sbjct: 225 NGNQLKDI--GTLASLTNLTDLDLANNQISNLAP 256
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 56/124 (45%), Gaps = 25/124 (20%)
Query: 269 NNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPE-- 326
NN I I P + LTNLT L L NQ++ P L N + L L LS NT+S I
Sbjct: 94 NNQIADITP-LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGL 150
Query: 327 ------------------IGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLS 368
+ NLT L +LD+S N ++ S L + N+ ++ + N +S
Sbjct: 151 TSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQIS 208
Query: 369 GVVP 372
+ P
Sbjct: 209 DITP 212
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 66 LRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLN 125
L NL +++ SNN L PL+ NL L + + N++ + P + NLTNLT L L N
Sbjct: 62 LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 126 QLSGRLP 132
Q++ P
Sbjct: 118 QITDIDP 124
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 48/114 (42%), Gaps = 24/114 (21%)
Query: 39 IGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRL 98
+ L+KL EL L N ++ P + L L L+L+ N L P+ NLK+L L L
Sbjct: 257 LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPI--SNLKNLTYLTL 312
Query: 99 RGNKLDGLIP--------------------SSIGNLTNLTHLDLSLNQLSGRLP 132
N + + P SS+ NLTN+ L NQ+S P
Sbjct: 313 YFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP 366
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 39 IGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRL 98
+ L+ L L L N +T P + +L NL L+LS+N ++ L L L L
Sbjct: 103 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISAL--SGLTSLQQLNF 158
Query: 99 RGNKLDGLIPSSIGNLTNLTHLDLSLNQLS 128
N++ L P + NLT L LD+S N++S
Sbjct: 159 SSNQVTDLKP--LANLTTLERLDISSNKVS 186
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 57/112 (50%), Gaps = 14/112 (12%)
Query: 2 DNNGNAAELSQLNFTCFPNLESIIIPYTLLS---------GRIPSEIGALSKLEELALPY 52
D +A +LS L N+ + I Y L+ +P+EI LS L L L +
Sbjct: 223 DQLWHALDLSNLQIF---NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSH 279
Query: 53 NSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLD 104
N LT ++PAE+GS L +N++ ++P EFGNL +L L + GN L+
Sbjct: 280 NRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLE 329
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 3/87 (3%)
Query: 255 VGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVL 314
+ +L L L+GN+L +P I L+NL L+L +N+L +S+P EL +C QL+
Sbjct: 243 IFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRL-TSLPAELGSCFQLKYFYF 300
Query: 315 SHNTLSGIVPPEIGNLTHLRQLDLSHN 341
N ++ + P E GNL +L+ L + N
Sbjct: 301 FDNMVTTL-PWEFGNLCNLQFLGVEGN 326
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Query: 35 IPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLD 94
I + I L L L NSLT +PAEI +L NL LDLS+N L S+P E G+ L
Sbjct: 239 ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLK 296
Query: 95 ALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRL 131
N + L P GNL NL L + N L +
Sbjct: 297 YFYFFDNMVTTL-PWEFGNLCNLQFLGVEGNPLEKQF 332
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 50/116 (43%), Gaps = 30/116 (25%)
Query: 72 LDLSN-NILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGR 130
LDLSN I N I L L L GN L L P+ I NL+NL LDLS N+L+
Sbjct: 229 LDLSNLQIFN--ISANIFKYDFLTRLYLNGNSLTEL-PAEIKNLSNLRVLDLSHNRLTS- 284
Query: 131 LPQEVGXXXXXXXXXXXXXXXTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNM 186
LP E+G QL Y ++N+V LP E GN+
Sbjct: 285 LPAELGSCF------------------------QLKYFYF-FDNMVTTLPWEFGNL 315
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%), Gaps = 2/44 (4%)
Query: 309 LQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLG 352
L L L+ N+L+ + P EI NL++LR LDLSHN + ++P++LG
Sbjct: 249 LTRLYLNGNSLTEL-PAEIKNLSNLRVLDLSHNRLT-SLPAELG 290
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 66/122 (54%), Gaps = 12/122 (9%)
Query: 255 VGNLKYLDSLSLDGNNL--IGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNL 312
+G L LD LSL+GN L IG T+ LTNLT L+L NQ+S+ P L ++L L
Sbjct: 212 LGILTNLDELSLNGNQLKDIG----TLASLTNLTDLDLANNQISNLAP--LSGLTKLTEL 265
Query: 313 VLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVP 372
L N +S I P + LT L L+L+ N + P + + N++ + L NN+S + P
Sbjct: 266 KLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 321
Query: 373 AS 374
S
Sbjct: 322 VS 323
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 61/115 (53%), Gaps = 8/115 (6%)
Query: 18 FPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNN 77
NLES+I +S P +G L+ L+EL+L N L + SL NL +LDL+NN
Sbjct: 193 LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANN 248
Query: 78 ILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLP 132
++ PL L L L+L N++ + P + LT LT+L+L+ NQL P
Sbjct: 249 QISNLAPL--SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP 299
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 6/92 (6%)
Query: 279 IGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDL 338
+ YL NLT +N NQL+ P L N ++L ++++++N ++ I P + NLT+L L L
Sbjct: 59 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 114
Query: 339 SHNFINGTIPSQLGYIPNISAVDLSKNNLSGV 370
+N I P L + N++ ++LS N +S +
Sbjct: 115 FNNQITDIDP--LKNLTNLNRLELSSNTISDI 144
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 6/94 (6%)
Query: 39 IGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRL 98
+ L+ LE L + N ++ + + L NL L +NN ++ PL G L +LD L L
Sbjct: 168 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPL--GILTNLDELSL 223
Query: 99 RGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLP 132
GN+L + ++ +LTNLT LDL+ NQ+S P
Sbjct: 224 NGNQLKDI--GTLASLTNLTDLDLANNQISNLAP 255
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 56/123 (45%), Gaps = 24/123 (19%)
Query: 269 NNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPE-- 326
NN I I P + LTNLT L L NQ++ P L N + L L LS NT+S I
Sbjct: 94 NNQIADITP-LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGL 150
Query: 327 -----------------IGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSG 369
+ NLT L +LD+S N ++ S L + N+ ++ + N +S
Sbjct: 151 TSLQQLNFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISD 208
Query: 370 VVP 372
+ P
Sbjct: 209 ITP 211
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 66 LRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLN 125
L NL +++ SNN L PL+ NL L + + N++ + P + NLTNLT L L N
Sbjct: 62 LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 126 QLSGRLP 132
Q++ P
Sbjct: 118 QITDIDP 124
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 48/114 (42%), Gaps = 24/114 (21%)
Query: 39 IGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRL 98
+ L+KL EL L N ++ P + L L L+L+ N L P+ NLK+L L L
Sbjct: 256 LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPI--SNLKNLTYLTL 311
Query: 99 RGNKLDGLIP--------------------SSIGNLTNLTHLDLSLNQLSGRLP 132
N + + P SS+ NLTN+ L NQ+S P
Sbjct: 312 YFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP 365
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 82/321 (25%), Positives = 117/321 (36%), Gaps = 52/321 (16%)
Query: 62 EIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGN-LTNLTHL 120
E S +L EL+L+ NI++ P F NL +L L LR N+L LIP + L+NLT L
Sbjct: 51 EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKL 109
Query: 121 DLSLNQLSGRLPQEVGXXXXXXXXXXXXXXXTGPIPSTLYHLNQLSNLYLAYNNLVGPLP 180
D+S N++ L LN L L L NL +P
Sbjct: 110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS-IP 168
Query: 181 KEVGNMKXXXXXXXXXXXXTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGXXXXXXXX 240
E G I + +LN+ D S RL
Sbjct: 169 TEA------------LSHLHGLIVLRLRHLNINAIRDYSFKRL----------------- 199
Query: 241 XXXXXXXXGLLPREVGNLKYLD-------------SLSLDGNNLIGSIPPTIGYLTNLTS 287
L E+ + YLD SLS+ NL + +L L
Sbjct: 200 -------YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRF 252
Query: 288 LNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTI 347
LNL YN +S+ L +LQ + L L+ + P L +LR L++S N +
Sbjct: 253 LNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLE 312
Query: 348 PSQLGYIPNISAVDLSKNNLS 368
S + N+ + L N L+
Sbjct: 313 ESVFHSVGNLETLILDSNPLA 333
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 8/131 (6%)
Query: 250 LLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQL 309
LL +L L SL + N+L+ L +L L L L+S IP E + S L
Sbjct: 119 LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS-IPTEAL--SHL 175
Query: 310 QNLV---LSHNTLSGIVPPEIGNLTHLRQLDLSHN-FINGTIPSQLGYIPNISAVDLSKN 365
L+ L H ++ I L L+ L++SH +++ P+ L Y N++++ ++
Sbjct: 176 HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL-YGLNLTSLSITHC 234
Query: 366 NLSGVVPASVR 376
NL+ V +VR
Sbjct: 235 NLTAVPYLAVR 245
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 44/95 (46%)
Query: 282 LTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHN 341
L L L + + ++ P + L +L ++H L+ + + +L +LR L+LS+N
Sbjct: 199 LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN 258
Query: 342 FINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVR 376
I+ S L + + + L L+ V P + R
Sbjct: 259 PISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFR 293
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 71/142 (50%), Gaps = 10/142 (7%)
Query: 1 MDNNGNAAELSQLNFTCFP-NLESIIIPYTLLSGRIPS----EIGALSKLEELALPYNSL 55
+NN N+ + S T P N+ + L S ++ S L+KL L L N L
Sbjct: 14 CNNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL 73
Query: 56 TGTIPAEI-GSLRNLVELDLSNNILNGSIPL-EFGNLKDLDALRLRGNKLDGLIPSSIGN 113
T+PA I L+NL L +++N L ++P+ F L +L LRL N+L L P +
Sbjct: 74 Q-TLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS 131
Query: 114 LTNLTHLDLSLNQLSGRLPQEV 135
LT LT+L L N+L LP+ V
Sbjct: 132 LTKLTYLSLGYNELQS-LPKGV 152
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 48/106 (45%), Gaps = 2/106 (1%)
Query: 261 LDSLSLDGNNLIGSIPPTI-GYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTL 319
L L LD N L S+PP + LT LT L+LGYN+L S + L+ L L +N L
Sbjct: 111 LAELRLDRNQL-KSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL 169
Query: 320 SGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKN 365
+ LT L+ L L +N + + + + L +N
Sbjct: 170 KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 46/119 (38%), Gaps = 1/119 (0%)
Query: 15 FTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDL 74
F NLE++ + L L L EL L N L P SL L L L
Sbjct: 81 FKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSL 140
Query: 75 SNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQ 133
N L F L L LRL N+L + + LT L L L NQL R+P+
Sbjct: 141 GYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPE 198
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 43/97 (44%), Gaps = 2/97 (2%)
Query: 252 PREVGNLKYLDSLSLDGNNLIGSIPPTI-GYLTNLTSLNLGYNQLSSSIPPELMNCSQLQ 310
PR +L L LSL G N + S+P + LT+L L L NQL ++L+
Sbjct: 126 PRVFDSLTKLTYLSL-GYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELK 184
Query: 311 NLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTI 347
L L +N L + +L L+ L L N + T
Sbjct: 185 TLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC 221
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Query: 35 IPSEIGALSKLEELALPYNSLTGTIPAEIG-SLRNLVELDLSNNILNGSIPLEFGNLKDL 93
+ S L +LE L +++L + SLRNL+ LD+S+ + F L L
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447
Query: 94 DALRLRGNKL-DGLIPSSIGNLTNLTHLDLSLNQL 127
+ L++ GN + +P L NLT LDLS QL
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 307 SQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFING-TIPSQLGYIPNISAVDLSKN 365
S LQ LV L+ + IG+L L++L+++HN I +P + N+ +DLS N
Sbjct: 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159
Query: 366 NLSGVVPASVRIIPKL 381
+ + +R++ ++
Sbjct: 160 KIQSIYCTDLRVLHQM 175
Score = 35.0 bits (79), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 56/134 (41%), Gaps = 6/134 (4%)
Query: 4 NGNAAELSQLNFTCFPNLESII---IPYTLLSGRIPSEIGALSKLEELALPYNSLT-GTI 59
+ N ++S+ F+ F +L ++I I +T LS LE L + NS +
Sbjct: 405 HSNLKQMSE--FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462
Query: 60 PAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTH 119
P LRNL LDLS L P F +L L L + N+L + LT+L
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQK 522
Query: 120 LDLSLNQLSGRLPQ 133
+ L N P+
Sbjct: 523 IWLHTNPWDCSCPR 536
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 57/123 (46%), Gaps = 7/123 (5%)
Query: 9 ELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELAL---PYNSLTGTIPAEIGS 65
L +F FP L+ + + + +LS L L L P SL + + S
Sbjct: 42 HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101
Query: 66 LRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGL-IPSSIGNLTNLTHLDLSL 124
L+ LV ++ + L + P+ G+LK L L + N + +P NLTNL HLDLS
Sbjct: 102 LQKLVAVETNLASLE-NFPI--GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158
Query: 125 NQL 127
N++
Sbjct: 159 NKI 161
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 39 IGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNG-SIPLEFGNLKDLDALR 97
LS L++L +L IG L+ L EL++++N++ +P F NL +L+ L
Sbjct: 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155
Query: 98 LRGNKLDGLIPSSI 111
L NK+ + + +
Sbjct: 156 LSSNKIQSIYCTDL 169
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%)
Query: 283 TNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNF 342
TN+T LNL +NQL SQL +L + NT+S + P L L+ L+L HN
Sbjct: 30 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 89
Query: 343 INGTIPSQLGYIPNISAVDLSKNNLSGV 370
++ + N++ + L N++ +
Sbjct: 90 LSQLSDKTFAFCTNLTELHLMSNSIQKI 117
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 259 KYLDSLSLD-GNNLIGSIPPTIGY-LTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSH 316
+Y SLD G N I + P + L L LNL +N+LS C+ L L L
Sbjct: 52 RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMS 111
Query: 317 NTLSGIVPPEIGNLTHLRQLDLSHNFINGT 346
N++ I +L LDLSHN ++ T
Sbjct: 112 NSIQKIKNNPFVKQKNLITLDLSHNGLSST 141
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%)
Query: 283 TNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNF 342
TN+T LNL +NQL SQL +L + NT+S + P L L+ L+L HN
Sbjct: 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84
Query: 343 INGTIPSQLGYIPNISAVDLSKNNLSGV 370
++ + N++ + L N++ +
Sbjct: 85 LSQLSDKTFAFCTNLTELHLMSNSIQKI 112
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 259 KYLDSLSLD-GNNLIGSIPPTIGY-LTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSH 316
+Y SLD G N I + P + L L LNL +N+LS C+ L L L
Sbjct: 47 RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMS 106
Query: 317 NTLSGIVPPEIGNLTHLRQLDLSHNFINGT 346
N++ I +L LDLSHN ++ T
Sbjct: 107 NSIQKIKNNPFVKQKNLITLDLSHNGLSST 136
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%)
Query: 283 TNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNF 342
TN+T LNL +NQL SQL +L + NT+S + P L L+ L+L HN
Sbjct: 35 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 94
Query: 343 INGTIPSQLGYIPNISAVDLSKNNLSGV 370
++ + N++ + L N++ +
Sbjct: 95 LSQLSDKTFAFCTNLTELHLMSNSIQKI 122
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 259 KYLDSLSLD-GNNLIGSIPPTIGY-LTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSH 316
+Y SLD G N I + P + L L LNL +N+LS C+ L L L
Sbjct: 57 RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMS 116
Query: 317 NTLSGIVPPEIGNLTHLRQLDLSHNFINGT 346
N++ I +L LDLSHN ++ T
Sbjct: 117 NSIQKIKNNPFVKQKNLITLDLSHNGLSST 146
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 307 SQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFING-TIPSQLGYIPNISAVDLSKN 365
S LQ LV L+ + IG+L L++L+++HN I +P + N+ +DLS N
Sbjct: 124 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 183
Query: 366 NLSGVVPASVRIIPKL 381
+ + +R++ ++
Sbjct: 184 KIQSIYCTDLRVLHQM 199
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 57/136 (41%), Gaps = 6/136 (4%)
Query: 4 NGNAAELSQLNFTCFPNLESII---IPYTLLSGRIPSEIGALSKLEELALPYNSLT-GTI 59
+ N ++S+ F+ F +L ++I I +T LS LE L + NS +
Sbjct: 429 HSNLKQMSE--FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 486
Query: 60 PAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTH 119
P LRNL LDLS L P F +L L L + N L L +L
Sbjct: 487 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 546
Query: 120 LDLSLNQLSGRLPQEV 135
LD SLN + QE+
Sbjct: 547 LDYSLNHIMTSKKQEL 562
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 66/150 (44%), Gaps = 7/150 (4%)
Query: 258 LKYLDSLSLDGNNLIGSIPPTI-GYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSH 316
L L+ L + GN+ + P I L NLT L+L QL P + S LQ L +SH
Sbjct: 468 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 527
Query: 317 NTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIP-NISAVDLSKNNLSGVVPAS- 374
N + L L+ LD S N I + +L + P +++ ++L++N+ +
Sbjct: 528 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQS 587
Query: 375 ----VRIIPKLIVSENNLELENSTSSENAP 400
++ +L+V +E + + P
Sbjct: 588 FLQWIKDQRQLLVEVERMECATPSDKQGMP 617
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 7/125 (5%)
Query: 9 ELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELAL---PYNSLTGTIPAEIGS 65
L +F FP L+ + + + +LS L L L P SL + + S
Sbjct: 66 HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 125
Query: 66 LRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGL-IPSSIGNLTNLTHLDLSL 124
L+ LV ++ + L P+ G+LK L L + N + +P NLTNL HLDLS
Sbjct: 126 LQKLVAVETNLASLEN-FPI--GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 182
Query: 125 NQLSG 129
N++
Sbjct: 183 NKIQS 187
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 39 IGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNG-SIPLEFGNLKDLDALR 97
LS L++L +L IG L+ L EL++++N++ +P F NL +L+ L
Sbjct: 120 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 179
Query: 98 LRGNKLDGLIPSSI 111
L NK+ + + +
Sbjct: 180 LSSNKIQSIYCTDL 193
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 307 SQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFING-TIPSQLGYIPNISAVDLSKN 365
S LQ LV L+ + IG+L L++L+++HN I +P + N+ +DLS N
Sbjct: 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159
Query: 366 NLSGVVPASVRIIPKL 381
+ + +R++ ++
Sbjct: 160 KIQSIYCTDLRVLHQM 175
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 57/136 (41%), Gaps = 6/136 (4%)
Query: 4 NGNAAELSQLNFTCFPNLESII---IPYTLLSGRIPSEIGALSKLEELALPYNSLT-GTI 59
+ N ++S+ F+ F +L ++I I +T LS LE L + NS +
Sbjct: 405 HSNLKQMSE--FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462
Query: 60 PAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTH 119
P LRNL LDLS L P F +L L L + N L L +L
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 522
Query: 120 LDLSLNQLSGRLPQEV 135
LD SLN + QE+
Sbjct: 523 LDYSLNHIMTSKKQEL 538
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 66/150 (44%), Gaps = 7/150 (4%)
Query: 258 LKYLDSLSLDGNNLIGSIPPTI-GYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSH 316
L L+ L + GN+ + P I L NLT L+L QL P + S LQ L +SH
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 503
Query: 317 NTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIP-NISAVDLSKNNLSGVVPAS- 374
N + L L+ LD S N I + +L + P +++ ++L++N+ +
Sbjct: 504 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQS 563
Query: 375 ----VRIIPKLIVSENNLELENSTSSENAP 400
++ +L+V +E + + P
Sbjct: 564 FLQWIKDQRQLLVEVERMECATPSDKQGMP 593
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 7/125 (5%)
Query: 9 ELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELAL---PYNSLTGTIPAEIGS 65
L +F FP L+ + + + +LS L L L P SL + + S
Sbjct: 42 HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101
Query: 66 LRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGL-IPSSIGNLTNLTHLDLSL 124
L+ LV ++ + L P+ G+LK L L + N + +P NLTNL HLDLS
Sbjct: 102 LQKLVAVETNLASLEN-FPI--GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158
Query: 125 NQLSG 129
N++
Sbjct: 159 NKIQS 163
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 39 IGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNG-SIPLEFGNLKDLDALR 97
LS L++L +L IG L+ L EL++++N++ +P F NL +L+ L
Sbjct: 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155
Query: 98 LRGNKLDGLIPSSI 111
L NK+ + + +
Sbjct: 156 LSSNKIQSIYCTDL 169
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 52/115 (45%), Gaps = 8/115 (6%)
Query: 26 IPYTLLSGRIPSEIGALSKLEELALPYNSLTG----TIP-AEIGSLRNLVELDLSNNILN 80
+ Y L G +I AL +L L Y LTG ++P L NL EL L N L
Sbjct: 65 VRYLALGGNKLHDISALKELTNLT--YLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ 122
Query: 81 GSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV 135
F L +L L L N+L L LTNLT LDLS NQL LP+ V
Sbjct: 123 SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-LPEGV 176
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 254 EVGNLKYLDSLSLDGNNLIGSIPPTI-GYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNL 312
++ NL YL+ +N + S+P + LTNLT L+L YNQL S +QL++L
Sbjct: 131 KLTNLTYLNL----AHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDL 186
Query: 313 VLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIP 348
L N L + LT L+ + L N + T P
Sbjct: 187 RLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 53/114 (46%), Gaps = 5/114 (4%)
Query: 257 NLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSH 316
N++YL +L GN L + LTNLT L L NQL S + L+ LVL
Sbjct: 64 NVRYL---ALGGNKLHD--ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118
Query: 317 NTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGV 370
N L + LT+L L+L+HN + + N++ +DLS N L +
Sbjct: 119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL 172
Score = 35.0 bits (79), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 50/118 (42%), Gaps = 3/118 (2%)
Query: 253 REVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNL 312
+E+ NL YL L GN L LTNL L L NQL S + L L
Sbjct: 82 KELTNLTYL---ILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 313 VLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGV 370
L+HN L + LT+L +LDLS+N + + + + L +N L V
Sbjct: 139 NLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV 196
Score = 35.0 bits (79), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 45/118 (38%)
Query: 15 FTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDL 74
F NL+ +++ L L+ L L L +N L L NL ELDL
Sbjct: 105 FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDL 164
Query: 75 SNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLP 132
S N L F L L LRL N+L + LT+L ++ L N P
Sbjct: 165 SYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 36 PSEIGALSKLEELALPYNSLTGTIPAEI-GSLRNLVELDLSNNILNGSIPLEFGNLKDLD 94
P +L L+EL L N L G +P + SL L LDL N L F L L
Sbjct: 57 PGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLK 115
Query: 95 ALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQL 127
L + NKL L P I LT+LTHL L NQL
Sbjct: 116 ELFMCCNKLTEL-PRGIERLTHLTHLALDQNQL 147
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 50/119 (42%), Gaps = 3/119 (2%)
Query: 57 GTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTN 116
++PA I + N L L +N + P F +L +L L L N+L L +LT
Sbjct: 32 ASVPAGIPT--NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQ 89
Query: 117 LTHLDLSLNQLSGRLPQEVGXXXXXXXXXXXXXXXTGPIPSTLYHLNQLSNLYLAYNNL 175
LT LDL NQL+ LP V +P + L L++L L N L
Sbjct: 90 LTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQL 147
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Query: 282 LTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHN 341
L +L++L L N + S P + L+NLV L+ + IG L L++L+++HN
Sbjct: 79 LHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN 138
Query: 342 FINGT-IPSQLGYIPNISAVDLSKNNLSGVVPASVRIIPK 380
FI+ +P+ + N+ VDLS N + + ++ + +
Sbjct: 139 FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRE 178
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 42 LSKLEELALPYNSLTG-TIPAEIGSLRNLVELDLSNNILNGSIPLE--FGNLKDLDALRL 98
L +L+ L +++L T + SL L+ LD+S N I + F L L+ L++
Sbjct: 398 LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT--NTKIDFDGIFLGLTSLNTLKM 455
Query: 99 RGNKL-DGLIPSSIGNLTNLTHLDLSLNQL 127
GN D + + N TNLT LDLS QL
Sbjct: 456 AGNSFKDNTLSNVFANTTNLTFLDLSKCQL 485
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 1/107 (0%)
Query: 258 LKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHN 317
L +L +L L GN + P + LT+L +L +L+S + L+ L ++HN
Sbjct: 79 LHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN 138
Query: 318 TL-SGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLS 363
+ S +P NLT+L +DLS+N+I + L ++ V+LS
Sbjct: 139 FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLS 185
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 63 IGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGL-IPSSIGNLTNLTHLD 121
+ SL NLV ++ L S P+ G L L L + N + +P+ NLTNL H+D
Sbjct: 103 LTSLENLVAVETKLASLE-SFPI--GQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVD 159
Query: 122 LSLNQL 127
LS N +
Sbjct: 160 LSYNYI 165
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Query: 282 LTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHN 341
L +L++L L N + S P + L+NLV L+ + IG L L++L+++HN
Sbjct: 74 LHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN 133
Query: 342 FINGT-IPSQLGYIPNISAVDLSKNNLSGVVPASVRIIPK 380
FI+ +P+ + N+ VDLS N + + ++ + +
Sbjct: 134 FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRE 173
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 42 LSKLEELALPYNSLTG-TIPAEIGSLRNLVELDLSNNILNGSIPLE--FGNLKDLDALRL 98
L +L+ L +++L T + SL L+ LD+S N I + F L L+ L++
Sbjct: 393 LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT--NTKIDFDGIFLGLTSLNTLKM 450
Query: 99 RGNKL-DGLIPSSIGNLTNLTHLDLSLNQL 127
GN D + + N TNLT LDLS QL
Sbjct: 451 AGNSFKDNTLSNVFANTTNLTFLDLSKCQL 480
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 1/107 (0%)
Query: 258 LKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHN 317
L +L +L L GN + P + LT+L +L +L+S + L+ L ++HN
Sbjct: 74 LHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN 133
Query: 318 TL-SGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLS 363
+ S +P NLT+L +DLS+N+I + L ++ V+LS
Sbjct: 134 FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLS 180
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 63 IGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGL-IPSSIGNLTNLTHLD 121
+ SL NLV ++ L S P+ G L L L + N + +P+ NLTNL H+D
Sbjct: 98 LTSLENLVAVETKLASLE-SFPI--GQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVD 154
Query: 122 LSLNQL 127
LS N +
Sbjct: 155 LSYNYI 160
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Query: 282 LTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHN 341
L++L++L L N + S S LQ LV L+ + IG+L L++L+++HN
Sbjct: 75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134
Query: 342 FING-TIPSQLGYIPNISAVDLSKNNLSGVVPASVRIIPKL 381
I +P + N+ +DLS N + + +R++ ++
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 7/125 (5%)
Query: 9 ELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELAL---PYNSLTGTIPAEIGS 65
L +F FP L+ + + + +LS L L L P SL + + S
Sbjct: 42 HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101
Query: 66 LRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGL-IPSSIGNLTNLTHLDLSL 124
L+ LV ++ + L P+ G+LK L L + N + +P NLTNL HLDLS
Sbjct: 102 LQKLVAVETNLASLEN-FPI--GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158
Query: 125 NQLSG 129
N++
Sbjct: 159 NKIQS 163
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 39 IGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNG-SIPLEFGNLKDLDALR 97
LS L++L +L IG L+ L EL++++N++ +P F NL +L+ L
Sbjct: 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155
Query: 98 LRGNKLDGLIPSSIGNLTNL 117
L NK+ + + + L +
Sbjct: 156 LSSNKIQSIYCTDLRVLHQM 175
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Query: 282 LTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHN 341
L++L++L L N + S S LQ LV L+ + IG+L L++L+++HN
Sbjct: 76 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 135
Query: 342 FING-TIPSQLGYIPNISAVDLSKNNLSGVVPASVRIIPKL 381
I +P + N+ +DLS N + + +R++ ++
Sbjct: 136 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 176
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 54/125 (43%), Gaps = 7/125 (5%)
Query: 9 ELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELAL---PYNSLTGTIPAEIGS 65
L +F FP L+ + + + +LS L L L P SL + + S
Sbjct: 43 HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 102
Query: 66 LRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGL-IPSSIGNLTNLTHLDLSL 124
L+ LV ++ + L G+LK L L + N + +P NLTNL HLDLS
Sbjct: 103 LQKLVAVETNLASLEN---FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 159
Query: 125 NQLSG 129
N++
Sbjct: 160 NKIQS 164
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 39 IGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNG-SIPLEFGNLKDLDALR 97
LS L++L +L IG L+ L EL++++N++ +P F NL +L+ L
Sbjct: 97 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 156
Query: 98 LRGNKLDGLIPSSIGNLTNL 117
L NK+ + + + L +
Sbjct: 157 LSSNKIQSIYCTDLRVLHQM 176
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Query: 282 LTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHN 341
L++L++L L N + S S LQ LV L+ + IG+L L++L+++HN
Sbjct: 77 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 136
Query: 342 FING-TIPSQLGYIPNISAVDLSKNNLSGVVPASVRIIPKL 381
I +P + N+ +DLS N + + +R++ ++
Sbjct: 137 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 177
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 54/125 (43%), Gaps = 7/125 (5%)
Query: 9 ELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELAL---PYNSLTGTIPAEIGS 65
L +F FP L+ + + + +LS L L L P SL + + S
Sbjct: 44 HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 103
Query: 66 LRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGL-IPSSIGNLTNLTHLDLSL 124
L+ LV ++ + L G+LK L L + N + +P NLTNL HLDLS
Sbjct: 104 LQKLVAVETNLASLEN---FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 160
Query: 125 NQLSG 129
N++
Sbjct: 161 NKIQS 165
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 39 IGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNG-SIPLEFGNLKDLDALR 97
LS L++L +L IG L+ L EL++++N++ +P F NL +L+ L
Sbjct: 98 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 157
Query: 98 LRGNKLDGLIPSSIGNLTNL 117
L NK+ + + + L +
Sbjct: 158 LSSNKIQSIYCTDLRVLHQM 177
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Query: 282 LTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHN 341
L++L++L L N + S S LQ LV L+ + IG+L L++L+++HN
Sbjct: 76 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 135
Query: 342 FING-TIPSQLGYIPNISAVDLSKNNLSGVVPASVRIIPKL 381
I +P + N+ +DLS N + + +R++ ++
Sbjct: 136 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 176
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 54/125 (43%), Gaps = 7/125 (5%)
Query: 9 ELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELAL---PYNSLTGTIPAEIGS 65
L +F FP L+ + + + +LS L L L P SL + + S
Sbjct: 43 HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 102
Query: 66 LRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGL-IPSSIGNLTNLTHLDLSL 124
L+ LV ++ + L G+LK L L + N + +P NLTNL HLDLS
Sbjct: 103 LQKLVAVETNLASLEN---FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 159
Query: 125 NQLSG 129
N++
Sbjct: 160 NKIQS 164
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 39 IGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNG-SIPLEFGNLKDLDALR 97
LS L++L +L IG L+ L EL++++N++ +P F NL +L+ L
Sbjct: 97 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 156
Query: 98 LRGNKLDGLIPSSIGNLTNL 117
L NK+ + + + L +
Sbjct: 157 LSSNKIQSIYCTDLRVLHQM 176
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 65/137 (47%), Gaps = 11/137 (8%)
Query: 255 VGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSL-NLGYNQLSSSIPPELMNCSQLQNLV 313
VG+ ++ +L+L ++GS+ P L ++ N + +PP + + L
Sbjct: 9 VGSFHFVCALAL----IVGSMTPFSNELESMVDYSNRNLTHVPKDLPP------RTKALS 58
Query: 314 LSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPA 373
LS N++S + P+I L+ LR L LSHN I + ++ +D+S N L +
Sbjct: 59 LSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC 118
Query: 374 SVRIIPKLIVSENNLEL 390
+ + L +S N+ ++
Sbjct: 119 PMASLRHLDLSFNDFDV 135
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Query: 282 LTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHN 341
L++L++L L N + S S LQ LV L+ + IG+L L++L+++HN
Sbjct: 77 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHN 136
Query: 342 FING-TIPSQLGYIPNISAVDLSKNNLSGVVPASVRIIPKL 381
I +P + N+ +DLS N + + +R++ ++
Sbjct: 137 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 177
Score = 35.0 bits (79), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 54/125 (43%), Gaps = 7/125 (5%)
Query: 9 ELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELAL---PYNSLTGTIPAEIGS 65
L +F FP L+ + + + +LS L L L P SL + + S
Sbjct: 44 HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 103
Query: 66 LRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGL-IPSSIGNLTNLTHLDLSL 124
L+ LV L+ + L G+LK L L + N + +P NLTNL HLDLS
Sbjct: 104 LQKLVALETNLASLEN---FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 160
Query: 125 NQLSG 129
N++
Sbjct: 161 NKIQS 165
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 39 IGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNG-SIPLEFGNLKDLDALR 97
LS L++L +L IG L+ L EL++++N++ +P F NL +L+ L
Sbjct: 98 FSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 157
Query: 98 LRGNKLDGLIPSSIGNLTNL 117
L NK+ + + + L +
Sbjct: 158 LSSNKIQSIYCTDLRVLHQM 177
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 43/110 (39%)
Query: 261 LDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLS 320
+ + L + + + + T+L L L N+++ + L L LS N L
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG 336
Query: 321 GIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGV 370
I NL L LDLS+N I +PN+ + L N L V
Sbjct: 337 SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSV 386
Score = 35.4 bits (80), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 307 SQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGY-IPNISAVDLSKN 365
+ L+ L L+ N ++ I LTHL +L+LS NF+ G+I S++ + + +DLS N
Sbjct: 299 TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYN 357
Query: 366 NLSGVVPASVRIIPKL 381
++ + S +P L
Sbjct: 358 HIRALGDQSFLGLPNL 373
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 26 IPYTLLSGRIPSEIGALSKLEELALPYNSLTG----TIP-AEIGSLRNLVELDLSNNILN 80
+ Y L G +I AL +L L Y LTG ++P L NL EL L N L
Sbjct: 65 VRYLALGGNKLHDISALKELTNLT--YLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ 122
Query: 81 GSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV 135
F L +L L L N+L L LTNLT LDL NQL LP+ V
Sbjct: 123 SLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQS-LPEGV 176
Score = 35.4 bits (80), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 42/108 (38%)
Query: 15 FTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDL 74
F NL+ +++ L L+ L L L +N L L NL LDL
Sbjct: 105 FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDL 164
Query: 75 SNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDL 122
NN L F L L L L N+L + LT+LTH+ L
Sbjct: 165 DNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWL 212
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 48/118 (40%), Gaps = 3/118 (2%)
Query: 253 REVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNL 312
+E+ NL YL L GN L LTNL L L NQL S + L L
Sbjct: 82 KELTNLTYL---ILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 313 VLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGV 370
L HN L + LT+L +LDL +N + + + + L+ N L V
Sbjct: 139 YLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSV 196
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 36/91 (39%)
Query: 39 IGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRL 98
L+ L+EL L N L L NL L L +N L F L +L L L
Sbjct: 105 FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDL 164
Query: 99 RGNKLDGLIPSSIGNLTNLTHLDLSLNQLSG 129
N+L L LT L L L+ NQL
Sbjct: 165 DNNQLQSLPEGVFDKLTQLKQLSLNDNQLKS 195
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 269 NNLIGSIPP-TIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGI---VP 324
+N + S+P LTNLT L+L NQL S +QL+ L L+ N L + V
Sbjct: 142 HNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVF 201
Query: 325 PEIGNLTHL 333
+ +LTH+
Sbjct: 202 DRLTSLTHI 210
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 73/172 (42%), Gaps = 15/172 (8%)
Query: 215 KLDLSHNRLDSPIPPTIGXXXXXXXXXXXXXXXXGLLPREVGNLKYLDSLSLD----GNN 270
KLDLSHN L S +G +L L++L + SL +N
Sbjct: 125 KLDLSHNGLSST---KLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSN 181
Query: 271 LIGSIPP----TIGYLTNLTSLNLGYN-QLSSSIPPELMNCSQLQNLVLSHNTLSGIVPP 325
+ P TIG L L N N L+ + EL N S +QNL L++N L
Sbjct: 182 PLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTS-IQNLSLANNQLLATSES 240
Query: 326 EIGNL--THLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASV 375
L T+L QLDLS+N ++ Y+P++ + L NN+ + P S
Sbjct: 241 TFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSF 292
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%)
Query: 283 TNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNF 342
+N+T LNL +NQL P SQL L N++S + P L L+ L+L HN
Sbjct: 25 SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNE 84
Query: 343 INGTIPSQLGYIPNISAVDLSKNNLSGV 370
++ + N++ +DL N++ +
Sbjct: 85 LSQISDQTFVFCTNLTELDLMSNSIHKI 112
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 50/106 (47%), Gaps = 7/106 (6%)
Query: 269 NNLIGSIPPT-IGYLTNLTSLNLGYNQLSSSIPPELMNCS---QLQNLVLSHNTLSGIVP 324
+N + +PPT + L L+ G+N +S + PEL C L+ L L HN LS I
Sbjct: 34 HNQLRRLPPTNFTRYSQLAILDAGFNSISK-LEPEL--CQILPLLKVLNLQHNELSQISD 90
Query: 325 PEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGV 370
T+L +LDL N I+ + N+ +DLS N LS
Sbjct: 91 QTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSST 136
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 58/129 (44%), Gaps = 5/129 (3%)
Query: 258 LKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLG--YNQLSSSIPPELMNCSQ--LQNLV 313
LKYL+ L++D NN+ + T L +L L+L + L + ++ + L L
Sbjct: 328 LKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLN 387
Query: 314 LSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGY-IPNISAVDLSKNNLSGVVP 372
L+ N +S I L LR LDL N I + Q + NI + LS N +
Sbjct: 388 LTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLST 447
Query: 373 ASVRIIPKL 381
+S ++P L
Sbjct: 448 SSFALVPSL 456
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 69/183 (37%), Gaps = 8/183 (4%)
Query: 203 IPSTIGYLNLGGKLDLSHNRLDSPIPPTIGXXXXXXXXXXXXXXXXGLLPREVGNLKYLD 262
+PS I LNL +HN+L P L P L L
Sbjct: 23 LPSNITVLNL------THNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLK 76
Query: 263 SLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGI 322
L+L N L T + TNLT L+L N + N L L LSHN LS
Sbjct: 77 VLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSST 136
Query: 323 VPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPN--ISAVDLSKNNLSGVVPASVRIIPK 380
L +L++L L+ N I +L ++ N + +DLS N L P + I K
Sbjct: 137 KLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGK 196
Query: 381 LIV 383
L
Sbjct: 197 LFA 199
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 57/137 (41%), Gaps = 6/137 (4%)
Query: 3 NNGNAAELSQLNFTCFPNLESII---IPYTLLSGRIPSEIGALSKLEELALPYNSLT-GT 58
+ N ++S+ F+ F +L ++I I +T LS LE L + NS
Sbjct: 109 QHSNLKQMSE--FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166
Query: 59 IPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLT 118
+P LRNL LDLS L P F +L L L + N L L +L
Sbjct: 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 226
Query: 119 HLDLSLNQLSGRLPQEV 135
LD SLN + QE+
Sbjct: 227 VLDYSLNHIMTSKKQEL 243
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 2/116 (1%)
Query: 258 LKYLDSLSLDGNNLIGSIPPTI-GYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSH 316
L L+ L + GN+ + P I L NLT L+L QL P + S LQ L +SH
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208
Query: 317 NTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIP-NISAVDLSKNNLSGVV 371
N + L L+ LD S N I + +L + P +++ ++L++N+ +
Sbjct: 209 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 264
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 251 LPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQ 310
+PR+V L LDGN +P + +LT ++L N++S+ N +QL
Sbjct: 29 IPRDV------TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLL 81
Query: 311 NLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFIN 344
L+LS+N L I P L LR L L N I+
Sbjct: 82 TLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 45 LEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLD 104
+ EL L N T +P E+ + ++L +DLSNN ++ F N+ L L L N+L
Sbjct: 33 VTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91
Query: 105 GLIPSSIGNLTNLTHLDLSLNQLS 128
+ P + L +L L L N +S
Sbjct: 92 CIPPRTFDGLKSLRLLSLHGNDIS 115
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 284 NLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFI 343
++T L L NQ + +P EL N L + LS+N +S + N+T L L LS+N +
Sbjct: 32 DVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90
Query: 344 NGTIPSQLGYIPNISAVDLSKNNLSGVVP 372
P + ++ + L N++S VVP
Sbjct: 91 RCIPPRTFDGLKSLRLLSLHGNDIS-VVP 118
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 41/93 (44%)
Query: 35 IPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLD 94
+P E+ L + L N ++ ++ L+ L LS N L P F LK L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 95 ALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQL 127
L L GN + + + +L+ L+HL + N L
Sbjct: 106 LLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 250 LLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMN-CSQ 308
L+P+E+ N K+L + L N + + +T L +L L YN+L IPP +
Sbjct: 45 LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL-RCIPPRTFDGLKS 103
Query: 309 LQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHN 341
L+ L L N +S + +L+ L L + N
Sbjct: 104 LRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 9/89 (10%)
Query: 263 SLSLDGNNL-------IGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLS 315
SLS D N + + SIP G + SL+L N+++ +L C LQ LVL+
Sbjct: 1 SLSCDRNGICKGSSGSLNSIPS--GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLT 58
Query: 316 HNTLSGIVPPEIGNLTHLRQLDLSHNFIN 344
N ++ I +L L LDLS+N+++
Sbjct: 59 SNGINTIEEDSFSSLGSLEHLDLSYNYLS 87
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%)
Query: 72 LDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLS 128
LDLSNN + + +L AL L N ++ + S +L +L HLDLS N LS
Sbjct: 31 LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 87
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 9/89 (10%)
Query: 263 SLSLDGNNL-------IGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLS 315
SLS D N + + SIP G + SL+L N+++ +L C LQ LVL+
Sbjct: 27 SLSCDRNGICKGSSGSLNSIPS--GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLT 84
Query: 316 HNTLSGIVPPEIGNLTHLRQLDLSHNFIN 344
N ++ I +L L LDLS+N+++
Sbjct: 85 SNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%)
Query: 72 LDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLS 128
LDLSNN + + +L AL L N ++ + S +L +L HLDLS N LS
Sbjct: 57 LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 64/118 (54%), Gaps = 6/118 (5%)
Query: 255 VGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVL 314
V N L+SL + GNN I + P + L+ LT L +G NQ+S + + ++L+ L +
Sbjct: 217 VANXTRLNSLKI-GNNKITDLSP-LANLSQLTWLEIGTNQISD--INAVKDLTKLKXLNV 272
Query: 315 SHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVP 372
N +S I + NL+ L L L++N + +G + N++ + LS+N+++ + P
Sbjct: 273 GSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRP 328
Score = 35.0 bits (79), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 53/97 (54%), Gaps = 7/97 (7%)
Query: 279 IGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDL 338
I YLTNL LNL NQ++ P L N +L NL + N ++ I + NLT+LR+L L
Sbjct: 62 IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYL 117
Query: 339 SHNFINGTIPSQLGYIPNISAVDLSKN-NLSGVVPAS 374
+ + I+ P L + +++L N NLS + P S
Sbjct: 118 NEDNISDISP--LANLTKXYSLNLGANHNLSDLSPLS 152
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 16/98 (16%)
Query: 279 IGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDL 338
I LT+L SL+L YNQ+ P L + + L N ++ I P + N T L L +
Sbjct: 173 IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANXTRLNSLKI 228
Query: 339 SHNFINGTIP----SQLGY-------IPNISAV-DLSK 364
+N I P SQL + I +I+AV DL+K
Sbjct: 229 GNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTK 266
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 12/100 (12%)
Query: 37 SEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDL----SNNILNGSIPLEFGNLKD 92
S + LS+L L + N + ++I ++++L +L SN I + S+ NL
Sbjct: 237 SPLANLSQLTWLEIGTNQI-----SDINAVKDLTKLKXLNVGSNQISDISV---LNNLSQ 288
Query: 93 LDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLP 132
L++L L N+L IG LTNLT L LS N ++ P
Sbjct: 289 LNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRP 328
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 72 LDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRL 131
LDL NN + +F NLK+L L L NK+ + P + L L L LS NQL L
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-EL 115
Query: 132 PQEV 135
P+++
Sbjct: 116 PEKM 119
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 285 LTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFIN 344
LT L+L N+++ L + L L LS N++S + + N HLR+L L++N +
Sbjct: 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL- 252
Query: 345 GTIPSQLGYIPNISAVDLSKNNLSGV 370
+P L I V L NN+S +
Sbjct: 253 VKVPGGLADHKYIQVVYLHNNNISAI 278
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 64/153 (41%), Gaps = 28/153 (18%)
Query: 8 AELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYN-------------- 53
+++S F CF L+ + + T L G +PS + L+ L++L L N
Sbjct: 264 SDISSTTFQCFTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFP 322
Query: 54 SLT--------GTIPAEIGSLR---NLVELDLSNNILNGS--IPLEFGNLKDLDALRLRG 100
SLT + +G L NL LDLS+N + S L+ NL L L L
Sbjct: 323 SLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSH 382
Query: 101 NKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQ 133
N+ GL + L LDL+ +L PQ
Sbjct: 383 NEPLGLQSQAFKECPQLELLDLAFTRLHINAPQ 415
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 309 LQNLVLSHNTL--SGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNN 366
LQ L LSHN + S ++ NL+HL+ L+LSHN G P + +DL+
Sbjct: 349 LQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTR 408
Query: 367 LSGVVPAS 374
L P S
Sbjct: 409 LHINAPQS 416
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 56/113 (49%), Gaps = 19/113 (16%)
Query: 269 NNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCS-QLQNLVLSHNTLSGIVPPEI 327
N L G +P G L SLNL YNQ+ + IP + Q++NL +HN L I P I
Sbjct: 340 NQLEGKLP-AFGSEIKLASLNLAYNQI-TEIPANFCGFTEQVENLSFAHNKLKYI--PNI 395
Query: 328 GNLTHL---RQLDLSHNFINGTIPSQLGYIP---------NISAVDLSKNNLS 368
+ + +D S+N I G++ + + P N+S+++LS N +S
Sbjct: 396 FDAKSVSVXSAIDFSYNEI-GSVDGK-NFDPLDPTPFKGINVSSINLSNNQIS 446
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 72 LDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRL 131
LDL NN + +F NLK+L L L NK+ + P + L L L LS NQL L
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-EL 115
Query: 132 PQEV 135
P+++
Sbjct: 116 PEKM 119
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 285 LTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFIN 344
LT L+L N+++ L + L L LS N++S + + N HLR+L L++N +
Sbjct: 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL- 252
Query: 345 GTIPSQLGYIPNISAVDLSKNNLSGV 370
+P L I V L NN+S +
Sbjct: 253 VKVPGGLADHKYIQVVYLHNNNISAI 278
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 35.0 bits (79), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 40/73 (54%)
Query: 309 LQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLS 368
L+ L L++N ++ I L +L+ L+LS+N + S +P ++ +DL KN+++
Sbjct: 292 LKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA 351
Query: 369 GVVPASVRIIPKL 381
+ + + + KL
Sbjct: 352 IIQDQTFKFLEKL 364
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 6/109 (5%)
Query: 282 LTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHN 341
L +L LNL YN+++ LQ L LS+N L + L + +DL N
Sbjct: 289 LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN 348
Query: 342 FINGTIPSQLGYIPNISAVDLSKNNLSGV--VPASVRIIPKLIVSENNL 388
I ++ + +DL N L+ + +P+ IP + +S N L
Sbjct: 349 HIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPS----IPDIFLSGNKL 393
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%)
Query: 71 ELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQL 127
LDLS+ + F LKDL L L NK++ + + L NL L+LS N L
Sbjct: 270 HLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL 326
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 67/153 (43%), Gaps = 28/153 (18%)
Query: 8 AELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSL-------TGTIP 60
++LS F CF ++ + + L+G +PS I ++ L++L L NS + P
Sbjct: 266 SDLSSSTFRCFTRVQELDLTAAHLNG-LPSGIEGMNSLKKLVLNANSFDQLCQINAASFP 324
Query: 61 A-------------EIGS-----LRNLVELDLSNNILNGS--IPLEFGNLKDLDALRLRG 100
+ ++G+ L NL +LDLS++ + S L+ NL+ L L L
Sbjct: 325 SLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSY 384
Query: 101 NKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQ 133
N+ GL + L LD++ L + P
Sbjct: 385 NEPLGLEDQAFKECPQLELLDVAFTHLHVKAPH 417
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 55/134 (41%), Gaps = 26/134 (19%)
Query: 19 PNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNI 78
+ E + + T L+ + L+KL L L YN L L L L L+NN
Sbjct: 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94
Query: 79 LNGSIPLE-FGNLKDLDALRLRGNKLDGL-----------------------IPS-SIGN 113
L S+PL F +L LD L L GN+L L IP+ +
Sbjct: 95 L-ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDK 153
Query: 114 LTNLTHLDLSLNQL 127
LTNL L LS NQL
Sbjct: 154 LTNLQTLSLSTNQL 167
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 268 GNNLIGSIP-PTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPE 326
NN + S+P +LT L L LG NQL S ++L+ L L+ N L I
Sbjct: 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGA 150
Query: 327 IGNLTHLRQLDLSHN 341
LT+L+ L LS N
Sbjct: 151 FDKLTNLQTLSLSTN 165
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 262 DSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSG 321
+ L L L T LT LT LNL YNQL + + ++L L L++N L+
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 322 IVPPEIGNLTHLRQLD 337
+ +G HL QLD
Sbjct: 98 L---PLGVFDHLTQLD 110
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Query: 257 NLKYLDSLSLDGNNLIGSIPPTI-GYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLS 315
+L LD L L GN L S+P + LT L L L NQL S + LQ L LS
Sbjct: 105 HLTQLDKLYLGGNQL-KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLS 163
Query: 316 HNTLSGIVPPEIGNLTHLRQLDLSHN 341
N L + L L+ + L N
Sbjct: 164 TNQLQSVPHGAFDRLGKLQTITLFGN 189
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 55/134 (41%), Gaps = 26/134 (19%)
Query: 19 PNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNI 78
+ E + + T L+ + L+KL L L YN L L L L L+NN
Sbjct: 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94
Query: 79 LNGSIPLE-FGNLKDLDALRLRGNKLDGL-----------------------IPS-SIGN 113
L S+PL F +L LD L L GN+L L IP+ +
Sbjct: 95 L-ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDK 153
Query: 114 LTNLTHLDLSLNQL 127
LTNL L LS NQL
Sbjct: 154 LTNLQTLSLSTNQL 167
Score = 31.6 bits (70), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 268 GNNLIGSIP-PTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPE 326
NN + S+P +LT L L LG NQL S ++L+ L L+ N L I
Sbjct: 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGA 150
Query: 327 IGNLTHLRQLDLSHN 341
LT+L+ L LS N
Sbjct: 151 FDKLTNLQTLSLSTN 165
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 262 DSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSG 321
+ L L L T LT LT LNL YNQL + + ++L L L++N L+
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 322 IVPPEIGNLTHLRQLD 337
+ +G HL QLD
Sbjct: 98 L---PLGVFDHLTQLD 110
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Query: 257 NLKYLDSLSLDGNNLIGSIPPTI-GYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLS 315
+L LD L L GN L S+P + LT L L L NQL S + LQ L LS
Sbjct: 105 HLTQLDKLYLGGNQL-KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLS 163
Query: 316 HNTLSGIVPPEIGNLTHLRQLDLSHN 341
N L + L L+ + L N
Sbjct: 164 TNQLQSVPHGAFDRLGKLQTITLFGN 189
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
Query: 251 LPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQ 310
LP + NL+ L SL + N+ + ++ P I +L L L+L + PP + L+
Sbjct: 198 LPASIANLQNLKSLKIR-NSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK 256
Query: 311 NLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIP 355
L+L + +P +I LT L +LDL +PS + +P
Sbjct: 257 RLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLP 301
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
Query: 18 FPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGS---------LRN 68
F LE++ + L +P+ I +L++L EL++ +P + S L N
Sbjct: 126 FAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVN 184
Query: 69 LVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDL 122
L L L + S+P NL++L +L++R + L L P +I +L L LDL
Sbjct: 185 LQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGP-AIHHLPKLEELDL 236
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 7/98 (7%)
Query: 20 NLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGS---LRNLVELDLSN 76
NL+S+ I + LS P+ I L KLEEL L + P G L+ L+ D SN
Sbjct: 207 NLKSLKIRNSPLSALGPA-IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSN 265
Query: 77 NILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNL 114
+ ++PL+ L L+ L LRG +PS I L
Sbjct: 266 LL---TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 15/114 (13%)
Query: 262 DSLSLDGNNL-------IGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVL 314
+SLS D + + SIP G + SL+L +N+++ +L C+ LQ L+L
Sbjct: 26 ESLSCDASGVCDGRSRSFTSIPS--GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLIL 83
Query: 315 SH---NTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKN 365
NT+ G +G+L HL DLS N ++ S G + ++ ++L N
Sbjct: 84 KSSRINTIEGDAFYSLGSLEHL---DLSDNHLSSLSSSWFGPLSSLKYLNLMGN 134
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 42 LSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGN 101
L+ L L L +N L + NL LDLS+N L+ F +L+ L+ L L N
Sbjct: 63 LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNN 122
Query: 102 KLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV 135
+ + ++ ++ L L LS NQ+S R P E+
Sbjct: 123 HIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVEL 155
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 312 LVLSHNTLSGIVPPEI-GNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNL 367
L LSHN LS + LT+L L LSHN +N +PN+ +DLS N+L
Sbjct: 44 LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%)
Query: 45 LEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLD 104
+ E+ L N++ P + L +DLSNN ++ P F L+ L++L L GNK+
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 105 GL 106
L
Sbjct: 94 EL 95
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%)
Query: 45 LEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLD 104
+ E+ L N++ P + L +DLSNN ++ P F L+ L++L L GNK+
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 105 GL 106
L
Sbjct: 94 EL 95
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 66/147 (44%), Gaps = 14/147 (9%)
Query: 250 LLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLS--SSIPPELMNCS 307
L P ++ +LD N L ++ G+LT L +L L NQL S I
Sbjct: 318 LCPSKISPFLHLD---FSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMK 374
Query: 308 QLQNLVLSHNTLSGIVPPEIGNLTHLR---QLDLSHNFINGTIPSQLGYIPNISAVDLSK 364
LQ L +S N++S + G+ + + L++S N + TI L P I +DL
Sbjct: 375 SLQQLDISQNSVS--YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHS 430
Query: 365 NNLSGVVPASVRI--IPKLIVSENNLE 389
N + + V++ + +L V+ N L+
Sbjct: 431 NKIKSIPKQVVKLEALQELNVASNQLK 457
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 69 LVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGL--IPSSIGNLTNLTHLDLSLNQ 126
+ LD SNN+L ++ G+L +L+ L L+ N+L L I + +L LD+S N
Sbjct: 326 FLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS 385
Query: 127 LS 128
+S
Sbjct: 386 VS 387
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 286 TSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHN 341
T LN+ N +S ++++ S+L+ L++SHN + + L LDLSHN
Sbjct: 24 TILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 314 LSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGV 370
+S N +S + +I +L+ LR L +SHN I S + + +DLS N L +
Sbjct: 28 ISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKI 84
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 15/113 (13%)
Query: 263 SLSLDGNNL-------IGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLS 315
SLS D + + SIP G + SL+L +N+++ +L C+ LQ L+L
Sbjct: 1 SLSCDASGVCDGRSRSFTSIPS--GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILK 58
Query: 316 H---NTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKN 365
NT+ G +G+L HL DLS N ++ S G + ++ ++L N
Sbjct: 59 SSRINTIEGDAFYSLGSLEHL---DLSDNHLSSLSSSWFGPLSSLKYLNLMGN 108
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 51/126 (40%), Gaps = 9/126 (7%)
Query: 59 IPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLT 118
IPA+ LDL N L F L L L L GNKL L LT+LT
Sbjct: 26 IPAQT------TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLT 79
Query: 119 HLDLSLNQLSGRLPQEVGXXXXXXXXXXXXXXXTGPIPSTLY-HLNQLSNLYLAYNNLVG 177
+L+LS NQL LP V +P ++ L QL +L L Y N +
Sbjct: 80 YLNLSTNQLQS-LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRL-YQNQLK 137
Query: 178 PLPKEV 183
+P V
Sbjct: 138 SVPDGV 143
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 49/125 (39%), Gaps = 1/125 (0%)
Query: 258 LKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHN 317
L L L L GN L LT+LT LNL NQL S +QL+ L L+ N
Sbjct: 51 LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN 110
Query: 318 TLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVRI 377
L + LT L+ L L N + + ++ + L N P +R
Sbjct: 111 QLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG-IRY 169
Query: 378 IPKLI 382
+ + I
Sbjct: 170 LSEWI 174
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 68/135 (50%), Gaps = 7/135 (5%)
Query: 3 NNGNAAELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAE 62
N + +EL + +F +L ++++ +S L KL++L + N L IP
Sbjct: 62 QNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPN 120
Query: 63 IGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLD--GLIPSSIGNLTNLTHL 120
+ S +LVEL + +N + F L++++ + + GN L+ G P + L L +L
Sbjct: 121 LPS--SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYL 177
Query: 121 DLSLNQLSGRLPQEV 135
+S +L+G +P+++
Sbjct: 178 RISEAKLTG-IPKDL 191
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 285 LTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFIN 344
L L+L +N++ + +L+ S+L L L HN + I + L LR+L L +N ++
Sbjct: 195 LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS 254
Query: 345 GTIPSQLGYIPNISAVDLSKNNLSGV 370
+P+ L + + V L NN++ V
Sbjct: 255 -RVPAGLPDLKLLQVVYLHTNNITKV 279
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 6/90 (6%)
Query: 285 LTSLNLGYNQLSSS----IPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSH 340
L L Y ++S + IP +L L L L HN + I ++ + L +L L H
Sbjct: 169 FDGLKLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGH 226
Query: 341 NFINGTIPSQLGYIPNISAVDLSKNNLSGV 370
N I L ++P + + L N LS V
Sbjct: 227 NQIRMIENGSLSFLPTLRELHLDNNKLSRV 256
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 33/77 (42%)
Query: 46 EELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDG 105
+ L L N +T P L L LDL NN L F L L L L N+L
Sbjct: 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92
Query: 106 LIPSSIGNLTNLTHLDL 122
+ + NL +LTH+ L
Sbjct: 93 IPRGAFDNLKSLTHIWL 109
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Query: 279 IGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDL 338
I YL NL L L NQ++ P L N +++ L LS N L + I L ++ LDL
Sbjct: 65 IQYLNNLIGLELKDNQITDLTP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDL 120
Query: 339 SHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVP 372
+ I P L + N+ + L N ++ + P
Sbjct: 121 TSTQITDVTP--LAGLSNLQVLYLDLNQITNISP 152
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Query: 258 LKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHN 317
L L L LD N I +I P G LTNL L++G NQ++ P L N S+L L N
Sbjct: 134 LSNLQVLYLDLNQ-ITNISPLAG-LTNLQYLSIGNNQVNDLTP--LANLSKLTTLRADDN 189
Query: 318 TLSGIVPPEIGNLTHLRQLDLSHNFINGTIP 348
+S I P + +L +L ++ L N I+ P
Sbjct: 190 KISDISP--LASLPNLIEVHLKDNQISDVSP 218
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Query: 42 LSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGN 101
L+K+ EL L N L + I L+++ LDL++ + PL L +L L L N
Sbjct: 90 LTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTPL--AGLSNLQVLYLDLN 145
Query: 102 KLDGLIPSSIGNLTNLTHLDLSLNQLSGRLP 132
++ + P + LTNL +L + NQ++ P
Sbjct: 146 QITNISP--LAGLTNLQYLSIGNNQVNDLTP 174
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 33/77 (42%)
Query: 46 EELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDG 105
+ L L N +T P L L LDL NN L F L L L L N+L
Sbjct: 33 QVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92
Query: 106 LIPSSIGNLTNLTHLDL 122
+ + NL +LTH+ L
Sbjct: 93 IPRGAFDNLRSLTHIWL 109
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 33/77 (42%)
Query: 46 EELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDG 105
+ L L N +T P L L LDL NN L F L L L L N+L
Sbjct: 41 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 100
Query: 106 LIPSSIGNLTNLTHLDL 122
+ + NL +LTH+ L
Sbjct: 101 IPRGAFDNLKSLTHIWL 117
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 4/101 (3%)
Query: 293 NQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNF-INGTIPSQL 351
N++S +C L L L N L+GI LT L QLDLS N + P+
Sbjct: 41 NRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTF 100
Query: 352 GYIPNISAVDLSKNNLSGVVPASVR---IIPKLIVSENNLE 389
+ ++ + L + L + P R + L + +NNL+
Sbjct: 101 RGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQ 141
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 37 SEIGALSKLEELALPYNSLTGTIPAEI-GSLRNLVELDLSNNILNGSIPLEFGNLKDLDA 95
+ L L+ LT IPA + +RNL L+L NI L F +L++L++
Sbjct: 117 QHLDRLHGLKRFRFTTRRLTH-IPANLLTDMRNLSHLELRANIEEMPSHL-FDDLENLES 174
Query: 96 LRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLS 128
+ NKL + G + L L+L+ NQL
Sbjct: 175 IEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLK 207
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 11/99 (11%)
Query: 32 SGRIPSEI---GALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFG 88
S PS+ G +E +L ++PA I + ++ L + N + P F
Sbjct: 10 SAACPSQCSCSGTTVNCQERSL------ASVPAGIPTTTQVLHLYI--NQITKLEPGVFD 61
Query: 89 NLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQL 127
+L L L L N+L L LT LTHL L +NQL
Sbjct: 62 SLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQL 100
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 94 DALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSG 129
L L N++ L P +LT LT+L+L++NQL+
Sbjct: 43 QVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTA 78
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Query: 279 IGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDL 338
+ YL NL L L NQ++ P L N +++ L LS N L + I L ++ LDL
Sbjct: 59 VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDL 114
Query: 339 SHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVP 372
+ I P L + N+ + L N ++ + P
Sbjct: 115 TSTQITDVTP--LAGLSNLQVLYLDLNQITNISP 146
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 30/69 (43%)
Query: 308 QLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNL 367
L L L N L+GI P +H+++L L N I + + ++L N +
Sbjct: 55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQI 114
Query: 368 SGVVPASVR 376
S V+P S
Sbjct: 115 SCVMPGSFE 123
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 47 ELALPYNSLTGTIPAE--IGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLD 104
EL L N L G I ++ G L +LV+L+L N L G P F + L+L NK+
Sbjct: 33 ELLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91
Query: 105 GLIPSSIGNLTNLTHLDLSLNQLSGRLP 132
+ L L L+L NQ+S +P
Sbjct: 92 EISNKMFLGLHQLKTLNLYDNQISCVMP 119
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 308 QLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNL 367
+L+ LVLS LS I +L + +DLSHN + + L ++ I ++L+ N++
Sbjct: 477 RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHI 535
Query: 368 SGVVPASVRIIPK 380
S ++P+ + I+ +
Sbjct: 536 SIILPSLLPILSQ 548
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 253 REVGNLK---YLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQL 309
RE+ NL LD L L GN+L P + L +L L + +Q+ N L
Sbjct: 198 REIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSL 257
Query: 310 QNLVLSHNTLSGIVPPEIGN-LTHLRQLDLSHN 341
+ L+HN L+ ++P ++ L HL ++ L HN
Sbjct: 258 VEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 282 LTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHN 341
L+NL LNL L P L +L L LS N LS I P L HL++L + +
Sbjct: 184 LSNLRYLNLAMCNLREI--PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS 241
Query: 342 FINGTIPSQLGYIPNISAVDLSKNNLS 368
I + + ++ ++L+ NNL+
Sbjct: 242 QIQVIERNAFDNLQSLVEINLAHNNLT 268
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 57 GTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTN 116
++PA I + + L L+NN + P F +L +L L NKL + LT
Sbjct: 25 ASVPAGIPTDKQ--RLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQ 82
Query: 117 LTHLDLSLNQLSG 129
LT LDL+ N L
Sbjct: 83 LTQLDLNDNHLKS 95
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 36 PSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPL-EFGNLKDLD 94
P L L++L N LT L L +LDL++N L SIP F NLK L
Sbjct: 50 PGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK-SIPRGAFDNLKSLT 108
Query: 95 ALRLRGNKLD 104
+ L N D
Sbjct: 109 HIYLYNNPWD 118
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 71/158 (44%), Gaps = 25/158 (15%)
Query: 251 LPREV-GNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSS---SIPPELMNC 306
LPR + N L +LS+ NNL T T+L +L L N+L+ S+ P L +
Sbjct: 138 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHA 197
Query: 307 S-------------QLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGY 353
+ ++ L SHN+++ + P LT L+ L HN N T + L
Sbjct: 198 NVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILK---LQHN--NLTDTAWLLN 252
Query: 354 IPNISAVDLSKNNLSGVVP---ASVRIIPKLIVSENNL 388
P + VDLS N L ++ ++ + +L +S N L
Sbjct: 253 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 290
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 279 IGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDL 338
I YL NLTSLNL NQ++ P + + + L L+ N L+ I P + NL +L L L
Sbjct: 62 IQYLPNLTSLNLSNNQITDISPIQYL--PNVTKLFLNGNKLTDIKP--LANLKNLGWLFL 117
Query: 339 SHNFI 343
N +
Sbjct: 118 DENKV 122
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 63 IGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDL 122
I L NL L+LSNN + P+++ L ++ L L GNKL + P + NL NL L L
Sbjct: 62 IQYLPNLTSLNLSNNQITDISPIQY--LPNVTKLFLNGNKLTDIKP--LANLKNLGWLFL 117
Query: 123 SLNQL 127
N++
Sbjct: 118 DENKV 122
>pdb|3KYP|A Chain A, Crystal Structure Of Nucleosome Assembly Protein S
(Pfnaps) Plasmodium Falciparum
pdb|3KYP|B Chain B, Crystal Structure Of Nucleosome Assembly Protein S
(Pfnaps) Plasmodium Falciparum
pdb|3KYP|C Chain C, Crystal Structure Of Nucleosome Assembly Protein S
(Pfnaps) Plasmodium Falciparum
pdb|3KYP|D Chain D, Crystal Structure Of Nucleosome Assembly Protein S
(Pfnaps) Plasmodium Falciparum
pdb|3KYP|E Chain E, Crystal Structure Of Nucleosome Assembly Protein S
(Pfnaps) Plasmodium Falciparum
pdb|3KYP|F Chain F, Crystal Structure Of Nucleosome Assembly Protein S
(Pfnaps) Plasmodium Falciparum
Length = 193
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 19/34 (55%)
Query: 311 NLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFIN 344
N + H LS IVP +I L HL +LDL N N
Sbjct: 54 NTLRKHPALSDIVPEDIDILNHLVKLDLKDNMDN 87
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 49/110 (44%), Gaps = 23/110 (20%)
Query: 42 LSKLEELAL---PYNSLTGTIPAEIGSLR--NLVELD----LSNNILNGSIPLEF----- 87
LSKL EL L P S+ + SLR +L EL +S G + L +
Sbjct: 106 LSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGM 165
Query: 88 GNLKD---------LDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLS 128
NLKD L+ L L GN+LD + P S LT+L L L Q++
Sbjct: 166 CNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVA 215
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 29/65 (44%)
Query: 277 PTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQL 336
P + L L L L N+L P + L+ L L H ++ I +L L +L
Sbjct: 172 PNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEEL 231
Query: 337 DLSHN 341
+LSHN
Sbjct: 232 NLSHN 236
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%)
Query: 258 LKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHN 317
L L+ L L GN L P + LT+L L L + Q+++ + L+ L LSHN
Sbjct: 177 LVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHN 236
Query: 318 TLSGIVPPEIGNLTHLRQLDLSHN 341
L + L L ++ L+HN
Sbjct: 237 NLMSLPHDLFTPLHRLERVHLNHN 260
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 71/158 (44%), Gaps = 25/158 (15%)
Query: 251 LPREV-GNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSS---SIPPELMNC 306
LPR + N L +LS+ NNL T T+L +L L N+L+ S+ P L +
Sbjct: 132 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHA 191
Query: 307 SQLQNLV-------------LSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGY 353
+ NL+ SHN+++ + P LT L+ L HN N T + L
Sbjct: 192 NVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILK---LQHN--NLTDTAWLLN 246
Query: 354 IPNISAVDLSKNNLSGVVP---ASVRIIPKLIVSENNL 388
P + VDLS N L ++ ++ + +L +S N L
Sbjct: 247 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 284
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 49/110 (44%), Gaps = 23/110 (20%)
Query: 42 LSKLEELAL---PYNSLTGTIPAEIGSLR--NLVELD----LSNNILNGSIPLEF----- 87
LSKL EL L P S+ + SLR +L EL +S G + L +
Sbjct: 106 LSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGM 165
Query: 88 GNLKD---------LDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLS 128
NLKD L+ L L GN+LD + P S LT+L L L Q++
Sbjct: 166 CNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVA 215
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 29/65 (44%)
Query: 277 PTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQL 336
P + L L L L N+L P + L+ L L H ++ I +L L +L
Sbjct: 172 PNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEEL 231
Query: 337 DLSHN 341
+LSHN
Sbjct: 232 NLSHN 236
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%)
Query: 261 LDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLS 320
L+ L L GN L P + LT+L L L + Q+++ + L+ L LSHN L
Sbjct: 180 LEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLM 239
Query: 321 GIVPPEIGNLTHLRQLDLSHN 341
+ L L ++ L+HN
Sbjct: 240 SLPHDLFTPLHRLERVHLNHN 260
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 73 DLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQL 127
DLS + + + F + DL+ L L N+++ + ++ LT+L L L NQL
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQL 335
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.136 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,809,238
Number of Sequences: 62578
Number of extensions: 407610
Number of successful extensions: 1539
Number of sequences better than 100.0: 97
Number of HSP's better than 100.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 752
Number of HSP's gapped (non-prelim): 524
length of query: 408
length of database: 14,973,337
effective HSP length: 101
effective length of query: 307
effective length of database: 8,652,959
effective search space: 2656458413
effective search space used: 2656458413
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (25.0 bits)