Query 037302
Match_columns 408
No_of_seqs 198 out of 3093
Neff 10.9
Searched_HMMs 46136
Date Fri Mar 29 10:52:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037302.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037302hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 3E-42 6.5E-47 354.4 28.2 392 12-404 157-575 (968)
2 PLN00113 leucine-rich repeat r 100.0 4.1E-42 9E-47 353.4 27.3 390 16-406 137-553 (968)
3 KOG4194 Membrane glycoprotein 100.0 5.8E-37 1.3E-41 273.2 6.7 352 45-397 80-437 (873)
4 KOG4194 Membrane glycoprotein 100.0 3.2E-37 7E-42 274.8 3.9 357 20-377 79-438 (873)
5 KOG0444 Cytoskeletal regulator 99.9 1.6E-29 3.4E-34 228.0 -5.0 346 19-372 7-379 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 2.5E-29 5.5E-34 226.6 -4.7 341 15-363 51-394 (1255)
7 PLN03210 Resistant to P. syrin 99.9 8.5E-24 1.8E-28 218.6 27.7 343 9-366 548-904 (1153)
8 KOG0472 Leucine-rich repeat pr 99.9 1.2E-27 2.6E-32 204.9 -8.8 382 12-405 61-533 (565)
9 KOG0472 Leucine-rich repeat pr 99.9 1.2E-27 2.6E-32 205.0 -11.8 362 15-389 110-541 (565)
10 PLN03210 Resistant to P. syrin 99.9 1.6E-21 3.5E-26 201.7 27.1 337 36-387 551-904 (1153)
11 KOG0618 Serine/threonine phosp 99.9 4.1E-25 8.9E-30 207.7 -7.4 362 14-387 40-487 (1081)
12 KOG0618 Serine/threonine phosp 99.9 1E-24 2.3E-29 205.0 -7.1 235 21-271 23-276 (1081)
13 KOG4237 Extracellular matrix p 99.9 9.2E-24 2E-28 180.9 -4.8 121 5-125 77-198 (498)
14 KOG4237 Extracellular matrix p 99.8 3.2E-23 6.8E-28 177.6 -6.1 131 44-174 68-199 (498)
15 PRK15387 E3 ubiquitin-protein 99.8 2.5E-17 5.3E-22 159.6 16.9 266 68-377 202-467 (788)
16 PRK15387 E3 ubiquitin-protein 99.7 5.8E-17 1.3E-21 157.0 15.8 265 91-399 201-468 (788)
17 cd00116 LRR_RI Leucine-rich re 99.7 6.4E-19 1.4E-23 159.2 -2.7 56 72-127 3-63 (319)
18 cd00116 LRR_RI Leucine-rich re 99.7 1.3E-18 2.9E-23 157.1 -2.6 110 258-367 192-319 (319)
19 PRK15370 E3 ubiquitin-protein 99.6 4.9E-15 1.1E-19 144.6 12.3 256 92-381 179-438 (754)
20 PRK15370 E3 ubiquitin-protein 99.6 1.4E-14 3E-19 141.4 11.5 245 115-390 178-429 (754)
21 KOG0617 Ras suppressor protein 99.4 3.8E-15 8.3E-20 114.0 -4.9 157 39-200 29-186 (264)
22 KOG0617 Ras suppressor protein 99.4 3.9E-15 8.5E-20 113.9 -5.1 157 15-176 29-186 (264)
23 KOG1909 Ran GTPase-activating 99.3 8.7E-14 1.9E-18 118.5 -4.9 246 111-367 26-310 (382)
24 KOG1909 Ran GTPase-activating 99.2 7.2E-13 1.6E-17 112.9 -3.0 233 87-319 26-310 (382)
25 KOG4658 Apoptotic ATPase [Sign 99.2 1.1E-11 2.4E-16 123.3 4.4 135 13-150 517-653 (889)
26 KOG3207 Beta-tubulin folding c 99.2 3.5E-12 7.5E-17 111.9 0.4 207 162-368 120-339 (505)
27 KOG4658 Apoptotic ATPase [Sign 99.1 4.2E-11 9.2E-16 119.2 4.4 182 16-201 542-731 (889)
28 KOG3207 Beta-tubulin folding c 99.1 1.5E-11 3.3E-16 107.9 -1.1 207 184-390 118-340 (505)
29 PF14580 LRR_9: Leucine-rich r 99.1 6.6E-11 1.4E-15 94.5 2.4 124 233-361 17-146 (175)
30 KOG1259 Nischarin, modulator o 99.0 6.2E-11 1.3E-15 99.3 1.9 133 233-371 282-415 (490)
31 PF14580 LRR_9: Leucine-rich r 99.0 4.7E-10 1E-14 89.7 4.7 106 91-200 19-126 (175)
32 PF13855 LRR_8: Leucine rich r 98.9 1.3E-09 2.9E-14 71.6 3.9 61 307-367 1-61 (61)
33 KOG1259 Nischarin, modulator o 98.9 9.1E-10 2E-14 92.5 1.9 130 255-390 280-413 (490)
34 PF13855 LRR_8: Leucine rich r 98.8 3E-09 6.6E-14 69.8 3.7 61 283-343 1-61 (61)
35 PLN03150 hypothetical protein; 98.8 8.1E-09 1.7E-13 100.8 7.9 111 284-394 419-533 (623)
36 COG4886 Leucine-rich repeat (L 98.8 7.7E-09 1.7E-13 96.3 6.9 200 167-375 97-297 (394)
37 KOG0532 Leucine-rich repeat (L 98.8 3.4E-10 7.3E-15 102.9 -2.8 169 191-368 79-247 (722)
38 COG4886 Leucine-rich repeat (L 98.8 1E-08 2.2E-13 95.4 6.8 201 143-352 97-298 (394)
39 KOG4341 F-box protein containi 98.7 2E-10 4.4E-15 100.4 -7.1 278 91-368 138-439 (483)
40 PLN03150 hypothetical protein; 98.7 5.5E-08 1.2E-12 95.0 8.1 112 261-372 420-532 (623)
41 KOG0532 Leucine-rich repeat (L 98.7 1E-09 2.2E-14 99.8 -3.5 190 22-221 78-270 (722)
42 KOG2120 SCF ubiquitin ligase, 98.7 1.5E-10 3.3E-15 96.9 -8.3 177 188-366 186-374 (419)
43 KOG4341 F-box protein containi 98.7 1.6E-10 3.4E-15 101.1 -8.6 248 114-361 189-458 (483)
44 KOG2120 SCF ubiquitin ligase, 98.6 4.9E-10 1.1E-14 93.9 -7.7 180 141-343 187-375 (419)
45 KOG0531 Protein phosphatase 1, 98.5 1.7E-08 3.7E-13 94.2 -1.8 106 89-200 70-175 (414)
46 KOG0531 Protein phosphatase 1, 98.4 2.6E-08 5.6E-13 92.9 -1.3 221 88-321 92-319 (414)
47 KOG1859 Leucine-rich repeat pr 98.4 2.5E-09 5.4E-14 100.1 -8.0 128 236-369 165-293 (1096)
48 KOG2982 Uncharacterized conser 98.4 5.9E-08 1.3E-12 81.7 0.1 183 65-248 69-262 (418)
49 PF13306 LRR_5: Leucine rich r 98.4 9E-07 1.9E-11 68.2 6.6 128 8-141 1-128 (129)
50 KOG2982 Uncharacterized conser 98.3 1.5E-07 3.2E-12 79.3 1.3 225 65-289 43-285 (418)
51 COG5238 RNA1 Ran GTPase-activa 98.3 8E-08 1.7E-12 79.8 -1.5 39 281-319 212-254 (388)
52 PF13306 LRR_5: Leucine rich r 98.2 5E-06 1.1E-10 64.0 6.6 122 230-357 7-128 (129)
53 KOG1859 Leucine-rich repeat pr 98.0 9.3E-08 2E-12 89.9 -6.3 122 261-388 166-291 (1096)
54 PF12799 LRR_4: Leucine Rich r 98.0 5.6E-06 1.2E-10 49.6 2.3 39 331-370 1-39 (44)
55 KOG1644 U2-associated snRNP A' 97.9 1.9E-05 4E-10 63.2 5.3 103 260-364 43-149 (233)
56 KOG3665 ZYG-1-like serine/thre 97.9 1.7E-06 3.7E-11 84.6 -0.7 81 66-148 147-229 (699)
57 COG5238 RNA1 Ran GTPase-activa 97.9 5E-06 1.1E-10 69.4 1.4 42 14-55 87-132 (388)
58 KOG1644 U2-associated snRNP A' 97.9 3.1E-05 6.8E-10 61.9 5.6 102 282-385 41-149 (233)
59 PRK15386 type III secretion pr 97.8 0.00014 3.1E-09 65.9 9.9 138 207-366 48-188 (426)
60 PRK15386 type III secretion pr 97.8 0.00026 5.6E-09 64.3 10.7 158 183-365 48-210 (426)
61 KOG3665 ZYG-1-like serine/thre 97.7 1.7E-05 3.8E-10 77.7 1.6 157 210-368 121-288 (699)
62 KOG4579 Leucine-rich repeat (L 97.7 1.4E-06 3.1E-11 64.9 -4.4 86 258-345 52-137 (177)
63 PF12799 LRR_4: Leucine Rich r 97.6 0.00011 2.3E-09 44.1 3.6 37 19-56 1-37 (44)
64 KOG1947 Leucine rich repeat pr 97.5 3.7E-06 8E-11 80.6 -5.4 129 162-290 187-328 (482)
65 KOG4579 Leucine-rich repeat (L 97.5 4.3E-06 9.3E-11 62.4 -4.0 139 261-401 29-171 (177)
66 KOG1947 Leucine rich repeat pr 97.4 9.2E-06 2E-10 77.9 -4.1 132 137-268 186-330 (482)
67 KOG2739 Leucine-rich acidic nu 97.1 0.00013 2.8E-09 61.0 0.5 57 114-170 90-150 (260)
68 KOG2739 Leucine-rich acidic nu 97.0 0.00029 6.3E-09 58.9 1.4 63 257-319 63-128 (260)
69 KOG2123 Uncharacterized conser 96.9 2E-05 4.3E-10 66.2 -6.3 99 259-361 19-123 (388)
70 KOG2123 Uncharacterized conser 96.6 5.5E-05 1.2E-09 63.6 -5.4 80 42-125 18-98 (388)
71 PF00560 LRR_1: Leucine Rich R 96.2 0.002 4.3E-08 32.0 0.9 21 378-399 2-22 (22)
72 KOG3864 Uncharacterized conser 96.0 0.00037 7.9E-09 56.0 -3.9 81 285-365 103-186 (221)
73 KOG3864 Uncharacterized conser 94.5 0.0026 5.6E-08 51.3 -3.3 81 236-316 102-185 (221)
74 PF00560 LRR_1: Leucine Rich R 94.5 0.017 3.7E-07 28.6 0.7 12 333-344 2-13 (22)
75 PF13504 LRR_7: Leucine rich r 91.8 0.12 2.6E-06 23.7 1.3 11 333-343 3-13 (17)
76 smart00369 LRR_TYP Leucine-ric 90.8 0.21 4.5E-06 25.7 1.8 21 355-375 2-22 (26)
77 smart00370 LRR Leucine-rich re 90.8 0.21 4.5E-06 25.7 1.8 21 355-375 2-22 (26)
78 KOG4308 LRR-containing protein 85.4 0.0017 3.6E-08 61.2 -14.4 83 165-247 89-184 (478)
79 PF13516 LRR_6: Leucine Rich r 85.2 0.3 6.4E-06 24.6 0.2 15 19-33 2-16 (24)
80 KOG0473 Leucine-rich repeat pr 82.7 0.021 4.5E-07 47.3 -7.2 90 10-102 33-122 (326)
81 KOG4308 LRR-containing protein 77.9 0.0097 2.1E-07 56.2 -12.3 181 189-369 89-304 (478)
82 smart00365 LRR_SD22 Leucine-ri 69.4 4.2 9.1E-05 21.0 1.6 15 355-369 2-16 (26)
83 smart00367 LRR_CC Leucine-rich 66.1 4.5 9.6E-05 20.7 1.4 15 354-368 1-16 (26)
84 smart00364 LRR_BAC Leucine-ric 64.6 5.1 0.00011 20.7 1.3 13 332-344 3-15 (26)
85 KOG0473 Leucine-rich repeat pr 64.2 0.19 4.1E-06 41.9 -6.1 85 280-367 39-123 (326)
86 smart00368 LRR_RI Leucine rich 57.0 9.4 0.0002 19.9 1.6 14 355-368 2-15 (28)
87 KOG3763 mRNA export factor TAP 51.3 4.9 0.00011 38.2 -0.1 36 258-293 217-254 (585)
88 KOG1665 AFH1-interacting prote 47.6 23 0.00049 29.5 3.1 23 379-403 274-296 (302)
89 KOG3763 mRNA export factor TAP 34.9 24 0.00052 33.8 1.7 13 65-77 242-254 (585)
90 KOG1665 AFH1-interacting prote 32.0 69 0.0015 26.8 3.6 12 308-319 217-228 (302)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3e-42 Score=354.45 Aligned_cols=392 Identities=37% Similarity=0.542 Sum_probs=237.1
Q ss_pred ccccCCCCCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCC
Q 037302 12 QLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLK 91 (408)
Q Consensus 12 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 91 (408)
...+.++++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+..+.++++|+.|++++|.+.+..|..+.+++
T Consensus 157 p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 236 (968)
T PLN00113 157 PNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLT 236 (968)
T ss_pred ChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCC
Confidence 34566777777777777777666666677777777777777766655666666666777777766666655666666666
Q ss_pred CCceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcC
Q 037302 92 DLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLA 171 (408)
Q Consensus 92 ~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 171 (408)
+|++|++++|.+....|..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|+.|+++
T Consensus 237 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~ 316 (968)
T PLN00113 237 SLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLF 316 (968)
T ss_pred CCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECC
Confidence 66666666666655555566666666666666666654555555556666666666655554455555555555555555
Q ss_pred CCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCC------------------------cCCCCC
Q 037302 172 YNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHN------------------------RLDSPI 227 (408)
Q Consensus 172 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~------------------------~~~~~~ 227 (408)
+|.+....+..+..+++|+.|++++|.+.+..+..+..++.|+.+++++| .+....
T Consensus 317 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~ 396 (968)
T PLN00113 317 SNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEI 396 (968)
T ss_pred CCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccC
Confidence 55554444444555555555555555544444444444444444444444 444444
Q ss_pred CcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCC
Q 037302 228 PPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCS 307 (408)
Q Consensus 228 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 307 (408)
+..+..+++|+.|++++|.+.+..+..+..++.|+.|++++|.+....+..+..+++|++|++++|.+.+..+..+ ..+
T Consensus 397 p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~ 475 (968)
T PLN00113 397 PKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSK 475 (968)
T ss_pred CHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccc
Confidence 4444555566666666665554445555555566666666555554444444455556666665555543333322 235
Q ss_pred CCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCCccccC---CCeEEcc
Q 037302 308 QLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVRI---IPKLIVS 384 (408)
Q Consensus 308 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~---l~~l~l~ 384 (408)
+|+.|++++|++.+..+..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++.+..|..+.. +++|+++
T Consensus 476 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 555 (968)
T PLN00113 476 RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLS 555 (968)
T ss_pred cceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECC
Confidence 6666666666666566666666677777777777776666666666777777777777777766665543 4477777
Q ss_pred CCccCCCCCCCcCCCCCCCC
Q 037302 385 ENNLELENSTSSENAPPPQA 404 (408)
Q Consensus 385 ~n~~~~~~~~~~~~~~~~~~ 404 (408)
+|+++|.+|..+.+++.|+.
T Consensus 556 ~N~l~~~~p~~l~~l~~L~~ 575 (968)
T PLN00113 556 QNQLSGEIPKNLGNVESLVQ 575 (968)
T ss_pred CCcccccCChhHhcCcccCE
Confidence 77777777777666665543
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4.1e-42 Score=353.41 Aligned_cols=390 Identities=38% Similarity=0.570 Sum_probs=320.5
Q ss_pred CCCCCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCce
Q 037302 16 TCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDA 95 (408)
Q Consensus 16 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 95 (408)
..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+....|..+..+++|+.
T Consensus 137 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 216 (968)
T PLN00113 137 GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKW 216 (968)
T ss_pred cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccE
Confidence 46899999999999999899999999999999999999988888899999999999999999998888999999999999
Q ss_pred eecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcC
Q 037302 96 LRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNL 175 (408)
Q Consensus 96 L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 175 (408)
|++++|.+....|..+.++++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus 217 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 296 (968)
T PLN00113 217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL 296 (968)
T ss_pred EECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCee
Confidence 99999998888888899999999999999999878888999999999999999999878888899999999999999998
Q ss_pred CCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccc
Q 037302 176 VGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREV 255 (408)
Q Consensus 176 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 255 (408)
....+..+..+++|+.|++.+|.+.+..+..+..+++|+.+++++|.+....+..+..+++|+.|++++|.+.+..+..+
T Consensus 297 ~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~ 376 (968)
T PLN00113 297 SGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGL 376 (968)
T ss_pred ccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhH
Confidence 87888889999999999999999887788888999999999999999987788888888899999999887765555555
Q ss_pred cCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCC------------------------cCCcCCCCCcE
Q 037302 256 GNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIP------------------------PELMNCSQLQN 311 (408)
Q Consensus 256 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~------------------------~~~~~~~~L~~ 311 (408)
...++|+.|++.+|.+....+..+..+++|+.|++++|.+++..+ ..+..+++|+.
T Consensus 377 ~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 456 (968)
T PLN00113 377 CSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQM 456 (968)
T ss_pred hCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcE
Confidence 555555555555555544444444455555555555555444333 33444555555
Q ss_pred EEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCCcccc---CCCeEEccCCcc
Q 037302 312 LVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVR---IIPKLIVSENNL 388 (408)
Q Consensus 312 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~---~l~~l~l~~n~~ 388 (408)
|++++|++.+..+..+ ..++|+.|++++|++++..|..+.++++|+.|++++|++.+..|+.+. ++++|++++|++
T Consensus 457 L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 535 (968)
T PLN00113 457 LSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQL 535 (968)
T ss_pred EECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcc
Confidence 5555555544444333 346777888888888877888888888999999999999988887765 456999999999
Q ss_pred CCCCCCCcCCCCCCCCCC
Q 037302 389 ELENSTSSENAPPPQAKP 406 (408)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~ 406 (408)
++.+|..+.+++.|+.+-
T Consensus 536 ~~~~p~~~~~l~~L~~L~ 553 (968)
T PLN00113 536 SGQIPASFSEMPVLSQLD 553 (968)
T ss_pred cccCChhHhCcccCCEEE
Confidence 999999999888887543
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=5.8e-37 Score=273.17 Aligned_cols=352 Identities=24% Similarity=0.246 Sum_probs=182.0
Q ss_pred CcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCceeecCCccccccCCCcCCCCCCCCEEEcCC
Q 037302 45 LEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSL 124 (408)
Q Consensus 45 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~ 124 (408)
-+.|++++|++..+....|.++++|+.+.+.+|.+. ..|.......+|+.|+|.+|.|..+..+.+..++.|+.++++.
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR 158 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence 344555555555444445555555555555555554 3444444444555555555555555555555555555555555
Q ss_pred CeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccccccC
Q 037302 125 NQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIP 204 (408)
Q Consensus 125 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 204 (408)
|.+..+....|..-+++++|++++|.|+....+.|..+.+|..|.++.|++.......|..+++|+.|++..|.+...-.
T Consensus 159 N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ 238 (873)
T KOG4194|consen 159 NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEG 238 (873)
T ss_pred chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehh
Confidence 55544433444444455555555555554444455555555555555555554444445555555555555555543333
Q ss_pred cccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCC
Q 037302 205 STIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTN 284 (408)
Q Consensus 205 ~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 284 (408)
..|.++++++.+.+..|.+.......|..+.++++|+++.|.+......++-++..|+.|+++++.+.......+..+++
T Consensus 239 ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftqk 318 (873)
T KOG4194|consen 239 LTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQK 318 (873)
T ss_pred hhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhccc
Confidence 44555555555555555554444445555555555555555555444444445555555555555555444555555555
Q ss_pred CcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccC---CcCCCCCCCccEEe
Q 037302 285 LTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTI---PSQLGYIPNISAVD 361 (408)
Q Consensus 285 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~L~~L~ 361 (408)
|++|+++.|.++...+..|..+.+|++|+|+.|.++.+...+|..+++|++|++++|.+...+ ..+|.++++|+.|.
T Consensus 319 L~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~ 398 (873)
T KOG4194|consen 319 LKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLR 398 (873)
T ss_pred ceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhee
Confidence 555555555555444444555555555555555555454555555555555555555544321 12344455555555
Q ss_pred CCCCccCCcCCccccC---CCeEEccCCccCCCCCCCcC
Q 037302 362 LSKNNLSGVVPASVRI---IPKLIVSENNLELENSTSSE 397 (408)
Q Consensus 362 l~~~~l~~~~~~~~~~---l~~l~l~~n~~~~~~~~~~~ 397 (408)
+.||+++.+.-..|.. ++.|||.+|.|-...|.-|+
T Consensus 399 l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe 437 (873)
T KOG4194|consen 399 LTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFE 437 (873)
T ss_pred ecCceeeecchhhhccCcccceecCCCCcceeecccccc
Confidence 5555555444444332 33555555555444444443
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=3.2e-37 Score=274.79 Aligned_cols=357 Identities=24% Similarity=0.253 Sum_probs=186.0
Q ss_pred CCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCceeecC
Q 037302 20 NLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLR 99 (408)
Q Consensus 20 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 99 (408)
.-+.|+++++.+....+..|..+++|+.+.+..|..+ ..|.......+|+.|+|.+|.|...-...+..++-|+.|+|+
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence 3444555555555444555555555555555555544 233333334445555555555554444445555555555555
Q ss_pred CccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCCC
Q 037302 100 GNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPL 179 (408)
Q Consensus 100 ~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 179 (408)
.|.|..+....|..-.++++|++.+|.+++.....|..+.+|.+|.++.|+++...+..|..+++|+.|++..|.+...-
T Consensus 158 rN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive 237 (873)
T KOG4194|consen 158 RNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVE 237 (873)
T ss_pred hchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeeh
Confidence 55555444444544455555555555555555555555555555555555555444444444555555555555544333
Q ss_pred CccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCC
Q 037302 180 PKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLK 259 (408)
Q Consensus 180 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 259 (408)
...|+.+++|+.|.+..|.+.......|-.+..+++++++.|++......++.+++.|+.|+++.|.+.......+..++
T Consensus 238 ~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftq 317 (873)
T KOG4194|consen 238 GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQ 317 (873)
T ss_pred hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcc
Confidence 33455555555555555555444444555555555555555555544445555555555555555555544444455555
Q ss_pred CCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCc---CCcccccCCCccEE
Q 037302 260 YLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGI---VPPEIGNLTHLRQL 336 (408)
Q Consensus 260 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L 336 (408)
+|++|+++.+.+....+..+..+..|++|.++.|.++......|..+.+|++|+|++|.+... ...+|.++++|+.|
T Consensus 318 kL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL 397 (873)
T KOG4194|consen 318 KLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKL 397 (873)
T ss_pred cceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhe
Confidence 555555555555544444555555555555555555544444455555555555555543211 22344455555555
Q ss_pred EcCCccccccCCcCCCCCCCccEEeCCCCccCCcCCccccC
Q 037302 337 DLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVRI 377 (408)
Q Consensus 337 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~ 377 (408)
++.||++......+|.++++|+.|++.+|.+..+-|..|..
T Consensus 398 ~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~ 438 (873)
T KOG4194|consen 398 RLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEP 438 (873)
T ss_pred eecCceeeecchhhhccCcccceecCCCCcceeeccccccc
Confidence 55555555444445555555555555555555555555443
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.94 E-value=1.6e-29 Score=227.98 Aligned_cols=346 Identities=29% Similarity=0.424 Sum_probs=225.7
Q ss_pred CCCcEEEcCCCcccc-ccchhhccCCCCcEEeCCCCcCCCCCcccccCCC-----------------------CCcEEeC
Q 037302 19 PNLESIIIPYTLLSG-RIPSEIGALSKLEELALPYNSLTGTIPAEIGSLR-----------------------NLVELDL 74 (408)
Q Consensus 19 ~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-----------------------~L~~L~l 74 (408)
|-.+-+++++++++| ..|.....+++++.|.+...++. ..|..++.+. .|+.+++
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~ 85 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIV 85 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhh
Confidence 445555666666653 34455555555555555554443 3444444444 4444444
Q ss_pred CCceecc-cCcccccCCCCCceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccC
Q 037302 75 SNNILNG-SIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTG 153 (408)
Q Consensus 75 ~~~~~~~-~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 153 (408)
..|++.. -.|..+-.+..|..|+++.|++. ..|..++...++-+|++++|.+.++....+.++..|-.|+++.|++.
T Consensus 86 R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe- 163 (1255)
T KOG0444|consen 86 RDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE- 163 (1255)
T ss_pred hccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-
Confidence 4444331 23333445555666666666554 33444555566666666666665444445556666666666666665
Q ss_pred cCchhhccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccc-cccCcccccccccCeEEccCCcCCCCCCcccC
Q 037302 154 PIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLT-GPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIG 232 (408)
Q Consensus 154 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~ 232 (408)
.++..+..+..|++|.+++|++.......+..+.+|+.|.+++.+-+ ..++..+..+.+|..++++.|.+. ..|+.+.
T Consensus 164 ~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly 242 (1255)
T KOG0444|consen 164 MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLY 242 (1255)
T ss_pred hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHh
Confidence 55566666677777777777665433334455566666666665432 245666777777778888877775 5677777
Q ss_pred CCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccc-cCCCcCCcCCCCCcE
Q 037302 233 NLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLS-SSIPPELMNCSQLQN 311 (408)
Q Consensus 233 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~ 311 (408)
.+++|+.|++++|.++ ..........+|++|+++++.++ ..+.++..+++|+.|...+|.++ +.+|..++.+.+|+.
T Consensus 243 ~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Lev 320 (1255)
T KOG0444|consen 243 KLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEV 320 (1255)
T ss_pred hhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHH
Confidence 7888888888888777 33444555677888888888877 56777778888888888887754 246677778888888
Q ss_pred EEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCC
Q 037302 312 LVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVP 372 (408)
Q Consensus 312 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 372 (408)
+...+|++. ..++.++.|+.|+.|.++.|++. .+|+++.-++.|+.|++..|+-.-.+|
T Consensus 321 f~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 321 FHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred HHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCC
Confidence 888888876 77888888888888888888887 778888888888888888887665555
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.94 E-value=2.5e-29 Score=226.64 Aligned_cols=341 Identities=31% Similarity=0.406 Sum_probs=277.7
Q ss_pred cCCCCCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCC-CCCcccccCCCCCcEEeCCCceecccCcccccCCCCC
Q 037302 15 FTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLT-GTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDL 93 (408)
Q Consensus 15 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 93 (408)
++++.+|+.|.+..+.+. .+...++.++.||.+.+..|++. ..+|..+..+..|.+|++++|++. ..|..+.+..++
T Consensus 51 L~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~ 128 (1255)
T KOG0444|consen 51 LSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNS 128 (1255)
T ss_pred HHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCc
Confidence 345556666666666655 33445667777777777777654 356778889999999999999998 889999999999
Q ss_pred ceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCC
Q 037302 94 DALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYN 173 (408)
Q Consensus 94 ~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 173 (408)
-.|+++.|+|..++...|-+++.|-.|++++|++. .+|..+..+..|++|.+++|.+.......+..+++|+.|.+++.
T Consensus 129 iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~T 207 (1255)
T KOG0444|consen 129 IVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNT 207 (1255)
T ss_pred EEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccc
Confidence 99999999999888888889999999999999998 66777888999999999999876444445666788888999886
Q ss_pred cC-CCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCC
Q 037302 174 NL-VGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLP 252 (408)
Q Consensus 174 ~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 252 (408)
.- ...+|..+..+.+|..++++.|.+. ..+..+-..+.|..|++++|.++.. ........+|+.|+++.|+++ ..+
T Consensus 208 qRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL-~~~~~~W~~lEtLNlSrNQLt-~LP 284 (1255)
T KOG0444|consen 208 QRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITEL-NMTEGEWENLETLNLSRNQLT-VLP 284 (1255)
T ss_pred cchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeee-eccHHHHhhhhhhccccchhc-cch
Confidence 53 3457778889999999999999876 5677888899999999999998753 223444578999999999998 788
Q ss_pred ccccCCCCCCEEeCCCCcccc-cCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCC
Q 037302 253 REVGNLKYLDSLSLDGNNLIG-SIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLT 331 (408)
Q Consensus 253 ~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 331 (408)
.+++.++.|+.|.+.++++.- .++..++.+..|+++...+|.+. ..|..+.+|+.|+.|.++.|++. ..++++.-++
T Consensus 285 ~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~ 362 (1255)
T KOG0444|consen 285 DAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLP 362 (1255)
T ss_pred HHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcC
Confidence 889999999999999998763 37888999999999999999988 88999999999999999999976 6789999999
Q ss_pred CccEEEcCCccccccCCcCCCCCCCccEEeCC
Q 037302 332 HLRQLDLSHNFINGTIPSQLGYIPNISAVDLS 363 (408)
Q Consensus 332 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 363 (408)
.|+.|++..|+-.-..|..-..-++++.-+++
T Consensus 363 ~l~vLDlreNpnLVMPPKP~da~~~lefYNID 394 (1255)
T KOG0444|consen 363 DLKVLDLRENPNLVMPPKPNDARKKLEFYNID 394 (1255)
T ss_pred CcceeeccCCcCccCCCCcchhhhcceeeecc
Confidence 99999999997764444332223456554444
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.93 E-value=8.5e-24 Score=218.57 Aligned_cols=343 Identities=23% Similarity=0.262 Sum_probs=254.4
Q ss_pred cccccccCCCCCCcEEEcCCCc------cccccchhhccCC-CCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecc
Q 037302 9 ELSQLNFTCFPNLESIIIPYTL------LSGRIPSEIGALS-KLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNG 81 (408)
Q Consensus 9 ~~~~~~~~~~~~L~~L~l~~~~------~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 81 (408)
.++..+|.+|++|+.|.+.... ....+|..+..++ +|+.|.+.++.+. .+|..| ...+|+.|++.++.+.
T Consensus 548 ~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~- 624 (1153)
T PLN03210 548 HIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE- 624 (1153)
T ss_pred eecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-
Confidence 4667789999999999996543 2234566666664 5999999998776 556555 5689999999999887
Q ss_pred cCcccccCCCCCceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhcc
Q 037302 82 SIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYH 161 (408)
Q Consensus 82 ~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 161 (408)
.++..+..+++|++++++++......| .+..+++|+.|++.+|......+..+..+++|+.|++++|.....++..+ .
T Consensus 625 ~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~ 702 (1153)
T PLN03210 625 KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-N 702 (1153)
T ss_pred ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-C
Confidence 566677889999999999875332334 37788999999999986555678888899999999999875433444433 6
Q ss_pred CCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCC-------CCCcccCCC
Q 037302 162 LNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDS-------PIPPTIGNL 234 (408)
Q Consensus 162 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-------~~~~~l~~~ 234 (408)
+++|+.|++++|.....++. ...+|+.|++.++.+.. ++..+ .+++|..|.+.++.... ..+.....+
T Consensus 703 l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~-lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~ 777 (1153)
T PLN03210 703 LKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEE-FPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLS 777 (1153)
T ss_pred CCCCCEEeCCCCCCcccccc---ccCCcCeeecCCCcccc-ccccc-cccccccccccccchhhccccccccchhhhhcc
Confidence 88999999999865444432 24688999999988763 33333 46777777776543211 111122345
Q ss_pred CCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEc
Q 037302 235 TNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVL 314 (408)
Q Consensus 235 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 314 (408)
++|+.|++++|......+..++.+++|+.|++.+|......+... .+++|+.|++++|......+. ..++|+.|++
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~---~~~nL~~L~L 853 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD---ISTNISDLNL 853 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc---cccccCEeEC
Confidence 789999999987665677778889999999999987554555444 688999999999865433332 2368999999
Q ss_pred CCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCc
Q 037302 315 SHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNN 366 (408)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 366 (408)
++|.++ ..+..+..+++|+.|++++|.....+|..+..+++|+.+++++|.
T Consensus 854 s~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 854 SRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 999887 567778889999999999986665777777888999999999995
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.91 E-value=1.2e-27 Score=204.90 Aligned_cols=382 Identities=30% Similarity=0.411 Sum_probs=233.4
Q ss_pred ccccCCCCCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecc----------
Q 037302 12 QLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNG---------- 81 (408)
Q Consensus 12 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---------- 81 (408)
.....+++-+.+++++++... ..|.+++.+..++.++.+.+++. .+|..+..+..|+.++++.+....
T Consensus 61 ~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~ 138 (565)
T KOG0472|consen 61 REDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELKELPDSIGRLLD 138 (565)
T ss_pred cHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccccceeecCchHHHHhh
Confidence 345677788888888877766 44555665555666666655554 445555555555555555554441
Q ss_pred ------------cCcccccCCCCCceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCC
Q 037302 82 ------------SIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNN 149 (408)
Q Consensus 82 ------------~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 149 (408)
..|..+..+.++..+++.++++....++.+. ++.|++++...|.+. ..|..++.+.+|..|++..|
T Consensus 139 l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~N 216 (565)
T KOG0472|consen 139 LEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRN 216 (565)
T ss_pred hhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhc
Confidence 3344444444444455555444433333332 556666666666555 45555666666666666666
Q ss_pred cccCcCchhhccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCc
Q 037302 150 NLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPP 229 (408)
Q Consensus 150 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~ 229 (408)
.+. ..+ .|.+|..|+++++..|.+.....+...+++++..|++++|.+. ..++.++-+.+|.+++++++.++. .+.
T Consensus 217 ki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~-Lp~ 292 (565)
T KOG0472|consen 217 KIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISS-LPY 292 (565)
T ss_pred ccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCcccc-CCc
Confidence 665 344 5666777777777666665332233446778888888888877 456677777888888888887763 556
Q ss_pred ccCCCCCccEEEccCCccccc-------C-------------------------------Ccc---ccCCCCCCEEeCCC
Q 037302 230 TIGNLTNLTSLDLSSNQLSGL-------L-------------------------------PRE---VGNLKYLDSLSLDG 268 (408)
Q Consensus 230 ~l~~~~~L~~L~l~~~~~~~~-------~-------------------------------~~~---~~~~~~L~~L~l~~ 268 (408)
.++++ +|+.|.+.|+.+... . ... .....+.+.|.+++
T Consensus 293 sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~ 371 (565)
T KOG0472|consen 293 SLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSD 371 (565)
T ss_pred ccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccc
Confidence 67776 788888777643210 0 000 01112344455554
Q ss_pred CcccccCCccccCC--CCCcEEeCCCCcccc-----------------------CCCcCCcCCCCCcEEEcCCCccCCcC
Q 037302 269 NNLIGSIPPTIGYL--TNLTSLNLGYNQLSS-----------------------SIPPELMNCSQLQNLVLSHNTLSGIV 323 (408)
Q Consensus 269 ~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~-----------------------~~~~~~~~~~~L~~L~l~~~~~~~~~ 323 (408)
-..+.++...|... .-.+.++++.|++.+ ..+..+.++++|..|++++|-+- -.
T Consensus 372 ~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~L 450 (565)
T KOG0472|consen 372 KQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DL 450 (565)
T ss_pred cccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hc
Confidence 44443322222211 124555666655432 34445566788888999888776 45
Q ss_pred CcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCCcccc---CCCeEEccCCccCCCCCCCcCCCC
Q 037302 324 PPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVR---IIPKLIVSENNLELENSTSSENAP 400 (408)
Q Consensus 324 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~---~l~~l~l~~n~~~~~~~~~~~~~~ 400 (408)
+..+..+..|+.++++.|.+. ..|.++.-...++.+..++||+..+.|..+. ++.+||+.+|.+. .||-.+.|++
T Consensus 451 P~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~Lgnmt 528 (565)
T KOG0472|consen 451 PEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMT 528 (565)
T ss_pred chhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhcccc
Confidence 666677778889999888776 6676666666777788888888877766444 4448888888885 7787888888
Q ss_pred CCCCC
Q 037302 401 PPQAK 405 (408)
Q Consensus 401 ~~~~~ 405 (408)
+|.-+
T Consensus 529 nL~hL 533 (565)
T KOG0472|consen 529 NLRHL 533 (565)
T ss_pred ceeEE
Confidence 76544
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.90 E-value=1.2e-27 Score=204.98 Aligned_cols=362 Identities=28% Similarity=0.405 Sum_probs=277.4
Q ss_pred cCCCCCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCc
Q 037302 15 FTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLD 94 (408)
Q Consensus 15 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 94 (408)
....+.++.++++.+.+. ..++.++.+..+..++..+|++. ..|.++..+.+|..+++.++.+....+..+ ++..|+
T Consensus 110 i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i-~m~~L~ 186 (565)
T KOG0472|consen 110 IGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHI-AMKRLK 186 (565)
T ss_pred Hhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHH-HHHHHH
Confidence 344577888888888777 66777888888999999888887 678888899999999999999884444444 489999
Q ss_pred eeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhh-ccCCCCCEEEcCCC
Q 037302 95 ALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTL-YHLNQLSNLYLAYN 173 (408)
Q Consensus 95 ~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~ 173 (408)
.++...|-++ ..|..++.+.+|+.|++..|++. ..| .|.++..|++++++.|.+. +++... .+++++..|++.+|
T Consensus 187 ~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdN 262 (565)
T KOG0472|consen 187 HLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDN 262 (565)
T ss_pred hcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecccc
Confidence 9999998777 55667999999999999999998 455 7999999999999999998 555544 47999999999999
Q ss_pred cCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCC----------------------------
Q 037302 174 NLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDS---------------------------- 225 (408)
Q Consensus 174 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~---------------------------- 225 (408)
++.+ .|..+..+.+|+.|++++|.++ ..+..++.+ +|+.+.+.++++..
T Consensus 263 klke-~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~ 339 (565)
T KOG0472|consen 263 KLKE-VPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQ 339 (565)
T ss_pred cccc-CchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCC
Confidence 9874 5666788999999999999998 567788888 89999888875420
Q ss_pred ------CC---C----cccCCCCCccEEEccCCcccccCCccccCC--CCCCEEeCCCCccc------------------
Q 037302 226 ------PI---P----PTIGNLTNLTSLDLSSNQLSGLLPREVGNL--KYLDSLSLDGNNLI------------------ 272 (408)
Q Consensus 226 ------~~---~----~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~------------------ 272 (408)
.. + .......+.+.|++++-+++....+.|... .-....+++++.+.
T Consensus 340 se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~l 419 (565)
T KOG0472|consen 340 SEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVL 419 (565)
T ss_pred CcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHh
Confidence 00 0 011122456777777766665444444221 22455566655432
Q ss_pred -----ccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccC
Q 037302 273 -----GSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTI 347 (408)
Q Consensus 273 -----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 347 (408)
+.++..+..+++|..|++++|.+. ..|..+.++..|+.|+++.|++. ..++.+.....++.+-.++|++....
T Consensus 420 snn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd 497 (565)
T KOG0472|consen 420 SNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVD 497 (565)
T ss_pred hcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccC
Confidence 123445567889999999998887 56667778888999999999987 67777777777888888889998666
Q ss_pred CcCCCCCCCccEEeCCCCccCCcCCcccc---CCCeEEccCCccC
Q 037302 348 PSQLGYIPNISAVDLSKNNLSGVVPASVR---IIPKLIVSENNLE 389 (408)
Q Consensus 348 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~---~l~~l~l~~n~~~ 389 (408)
+..+.++..|.+|++.+|.+..++| .++ ++++|++.+|++.
T Consensus 498 ~~~l~nm~nL~tLDL~nNdlq~IPp-~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 498 PSGLKNMRNLTTLDLQNNDLQQIPP-ILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hHHhhhhhhcceeccCCCchhhCCh-hhccccceeEEEecCCccC
Confidence 6668889999999999999886555 344 4559999999997
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=1.6e-21 Score=201.74 Aligned_cols=337 Identities=23% Similarity=0.273 Sum_probs=251.4
Q ss_pred chhhccCCCCcEEeCCCCcC------CCCCcccccCC-CCCcEEeCCCceecccCcccccCCCCCceeecCCccccccCC
Q 037302 36 PSEIGALSKLEELALPYNSL------TGTIPAEIGSL-RNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIP 108 (408)
Q Consensus 36 ~~~~~~~~~L~~L~l~~~~~------~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~ 108 (408)
..+|..+++|+.|.+..+.. ....+..+..+ ++|+.|.+.++.+. .+|..| ...+|+.|++.++.+. ..+
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~ 627 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLW 627 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccc
Confidence 45688999999999976532 22345556555 46999999998876 667766 4689999999999887 456
Q ss_pred CcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCCCCccccCCCC
Q 037302 109 SSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKN 188 (408)
Q Consensus 109 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 188 (408)
..+..+++|+.++++++......+ .+..+++|++|++.+|......+..+..+++|+.|++++|.....++..+ .+++
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~s 705 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKS 705 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCC
Confidence 667889999999999875432444 47788999999999987655778888999999999999987655555543 7899
Q ss_pred CCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccc-------cCCccccCCCCC
Q 037302 189 LDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSG-------LLPREVGNLKYL 261 (408)
Q Consensus 189 L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-------~~~~~~~~~~~L 261 (408)
|+.|++++|.....++. ...+++.++++++.+.. .|..+ .+++|++|.+.++.... ..+.....+++|
T Consensus 706 L~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~-lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL 780 (1153)
T PLN03210 706 LYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEE-FPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSL 780 (1153)
T ss_pred CCEEeCCCCCCcccccc---ccCCcCeeecCCCcccc-ccccc-cccccccccccccchhhccccccccchhhhhccccc
Confidence 99999999865433332 24678999999988754 34333 46788888887753221 111122345789
Q ss_pred CEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCc
Q 037302 262 DSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHN 341 (408)
Q Consensus 262 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 341 (408)
+.|++++|.....++..+.++++|+.|++++|......+... .+++|+.|++++|......+.. .++|+.|++++|
T Consensus 781 ~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n 856 (1153)
T PLN03210 781 TRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRT 856 (1153)
T ss_pred hheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCC
Confidence 999999998776778889999999999999986544555544 6899999999999644333332 368999999999
Q ss_pred cccccCCcCCCCCCCccEEeCCCCccCCcCCcc---ccCCCeEEccCCc
Q 037302 342 FINGTIPSQLGYIPNISAVDLSKNNLSGVVPAS---VRIIPKLIVSENN 387 (408)
Q Consensus 342 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~---~~~l~~l~l~~n~ 387 (408)
.++ .+|..+..+++|+.|++++|+-....|.. +..++.+++++|.
T Consensus 857 ~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 857 GIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 998 67888899999999999998544444443 3455678888876
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.87 E-value=4.1e-25 Score=207.66 Aligned_cols=362 Identities=33% Similarity=0.448 Sum_probs=235.2
Q ss_pred ccCCCCCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCC
Q 037302 14 NFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDL 93 (408)
Q Consensus 14 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 93 (408)
...++-+|++|+++++.+. ..|..+..+.+|+.|.++.|.+. ..+....++.+|+++.|.++... ..|..+..+.+|
T Consensus 40 ~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl 116 (1081)
T KOG0618|consen 40 FVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNL 116 (1081)
T ss_pred HhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcc
Confidence 3444555888888888776 56666777788888888888776 55667778888888888887766 677777888888
Q ss_pred ceeecCCccccccCCCcCCCCCC-------------------CCEEEcCCCeecccCcccc-------------------
Q 037302 94 DALRLRGNKLDGLIPSSIGNLTN-------------------LTHLDLSLNQLSGRLPQEV------------------- 135 (408)
Q Consensus 94 ~~L~l~~~~i~~~~~~~l~~l~~-------------------L~~L~l~~~~~~~~~~~~~------------------- 135 (408)
++|+++.|.+..+ |..+..++. ++++++..+.+...+..++
T Consensus 117 ~~LdlS~N~f~~~-Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dl 195 (1081)
T KOG0618|consen 117 QYLDLSFNHFGPI-PLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDL 195 (1081)
T ss_pred cccccchhccCCC-chhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhhhh
Confidence 8888887776533 222222211 2222222221111111111
Q ss_pred cCC--------------------CCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEec
Q 037302 136 GNL--------------------KNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLN 195 (408)
Q Consensus 136 ~~l--------------------~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 195 (408)
..+ ++++.++...|.++... . -....++++++++.+++.. .++++..+.+|+.+...
T Consensus 196 s~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~-~-~p~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n 272 (1081)
T KOG0618|consen 196 SNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLD-V-HPVPLNLQYLDISHNNLSN-LPEWIGACANLEALNAN 272 (1081)
T ss_pred hhccchhhhhhhhcccceEEecCcchheeeeccCcceeec-c-ccccccceeeecchhhhhc-chHHHHhcccceEeccc
Confidence 111 22333333333332110 0 1113467777777777763 45888888899998888
Q ss_pred CcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccc--------------------
Q 037302 196 RNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREV-------------------- 255 (408)
Q Consensus 196 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-------------------- 255 (408)
.|.+. ..+........|+.+.+..|.+.. .+..+.....|++|++..+++.+.....+
T Consensus 273 ~N~l~-~lp~ri~~~~~L~~l~~~~nel~y-ip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~l 350 (1081)
T KOG0618|consen 273 HNRLV-ALPLRISRITSLVSLSAAYNELEY-IPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTL 350 (1081)
T ss_pred chhHH-hhHHHHhhhhhHHHHHhhhhhhhh-CCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccccc
Confidence 88775 334444555666666666665543 33445556667777776665543221111
Q ss_pred -----cCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccC
Q 037302 256 -----GNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNL 330 (408)
Q Consensus 256 -----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 330 (408)
...+.|+.|.+.+|.+++.....+.++++|+.|++++|.+.......+.+++.|++|+++||+++ .+++.+..+
T Consensus 351 p~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~ 429 (1081)
T KOG0618|consen 351 PSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANL 429 (1081)
T ss_pred ccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhh
Confidence 12244677777777777666666778889999999999888666677788888999999999887 445777888
Q ss_pred CCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCc-CCcccc--CCCeEEccCCc
Q 037302 331 THLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGV-VPASVR--IIPKLIVSENN 387 (408)
Q Consensus 331 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~--~l~~l~l~~n~ 387 (408)
+.|++|...+|++. ..| .++.++.|+.++++.|+++.. .|+.+. +|++||+++|.
T Consensus 430 ~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 430 GRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred hhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 88888888888888 666 677888899999999988655 444444 68888988887
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.87 E-value=1e-24 Score=204.97 Aligned_cols=235 Identities=31% Similarity=0.407 Sum_probs=146.1
Q ss_pred CcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCceeecCC
Q 037302 21 LESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRG 100 (408)
Q Consensus 21 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 100 (408)
+..|++..+.+.....+...++.+|+.|+++++.+. ..|..+..+.+|+.|+++++.+. ..|....++.+|+++.|.+
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~ 100 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKN 100 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheecc
Confidence 777777777665333455566777999999999886 66777888999999999999988 6777788999999999999
Q ss_pred ccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCC-------------------CceEeccCCcccCcCchhhcc
Q 037302 101 NKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKN-------------------LLSLFLDNNNLTGPIPSTLYH 161 (408)
Q Consensus 101 ~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~-------------------L~~L~l~~~~~~~~~~~~~~~ 161 (408)
+... ..|..+..+.+|+.|+++.|.+.. .|..+..+.. ++.+++..+.+.......+..
T Consensus 101 n~l~-~lP~~~~~lknl~~LdlS~N~f~~-~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~ 178 (1081)
T KOG0618|consen 101 NRLQ-SLPASISELKNLQYLDLSFNHFGP-IPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYN 178 (1081)
T ss_pred chhh-cCchhHHhhhcccccccchhccCC-CchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhh
Confidence 9876 667778999999999999997762 2222222222 444444444443333333333
Q ss_pred CCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEE
Q 037302 162 LNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLD 241 (408)
Q Consensus 162 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~ 241 (408)
+.. .+++.+|.+. . ..+..+++|+.+....+.+... --.-++++.+..+.|.++..... ....+|++++
T Consensus 179 l~~--~ldLr~N~~~-~--~dls~~~~l~~l~c~rn~ls~l----~~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~d 247 (1081)
T KOG0618|consen 179 LTH--QLDLRYNEME-V--LDLSNLANLEVLHCERNQLSEL----EISGPSLTALYADHNPLTTLDVH--PVPLNLQYLD 247 (1081)
T ss_pred hhe--eeecccchhh-h--hhhhhccchhhhhhhhcccceE----EecCcchheeeeccCcceeeccc--cccccceeee
Confidence 332 4777777655 1 2345566666666655554321 11234455555555554422111 1224555555
Q ss_pred ccCCcccccCCccccCCCCCCEEeCCCCcc
Q 037302 242 LSSNQLSGLLPREVGNLKYLDSLSLDGNNL 271 (408)
Q Consensus 242 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 271 (408)
++.+.+.. .+.++..+.+|+.++..++.+
T Consensus 248 is~n~l~~-lp~wi~~~~nle~l~~n~N~l 276 (1081)
T KOG0618|consen 248 ISHNNLSN-LPEWIGACANLEALNANHNRL 276 (1081)
T ss_pred cchhhhhc-chHHHHhcccceEecccchhH
Confidence 55555552 225555555555555555544
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.85 E-value=9.2e-24 Score=180.85 Aligned_cols=121 Identities=22% Similarity=0.264 Sum_probs=80.6
Q ss_pred CCcccccccccCCCCCCcEEEcCCCccccccchhhccCCCCcEEeCCC-CcCCCCCcccccCCCCCcEEeCCCceecccC
Q 037302 5 GNAAELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPY-NSLTGTIPAEIGSLRNLVELDLSNNILNGSI 83 (408)
Q Consensus 5 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 83 (408)
|.|..|+..+|+.++.||+|+|+.+.+....|++|..+++|.+|.+.+ |+|++.....|.++..|+.|.+.-+.+....
T Consensus 77 N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir 156 (498)
T KOG4237|consen 77 NQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIR 156 (498)
T ss_pred CCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchh
Confidence 566677777777777777777777777666666777777766666655 6666555566667777777777666666666
Q ss_pred cccccCCCCCceeecCCccccccCCCcCCCCCCCCEEEcCCC
Q 037302 84 PLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLN 125 (408)
Q Consensus 84 ~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~ 125 (408)
..+|..++++..|.+-++.+..+....|..+..++.+.+..+
T Consensus 157 ~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~n 198 (498)
T KOG4237|consen 157 QDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQN 198 (498)
T ss_pred HHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcC
Confidence 666667777777777776666555555666666666655444
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.83 E-value=3.2e-23 Score=177.59 Aligned_cols=131 Identities=29% Similarity=0.350 Sum_probs=104.7
Q ss_pred CCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCceeecCC-ccccccCCCcCCCCCCCCEEEc
Q 037302 44 KLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRG-NKLDGLIPSSIGNLTNLTHLDL 122 (408)
Q Consensus 44 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~i~~~~~~~l~~l~~L~~L~l 122 (408)
.-.+|.|..|+|+.+.+.+|..+++|+.|+|++|.|..+.|.+|..++.+-.|.+-+ |+|+.+....|.++..++.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 467778888888877888888888888888888888888888888888877777766 7788787788888888888888
Q ss_pred CCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCc
Q 037302 123 SLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNN 174 (408)
Q Consensus 123 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 174 (408)
.-+.+.....++|..++++..|.+.++.+..+-..+|..+..++.+.+..+.
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence 8887776777788888888888888887775544567777778887776665
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.75 E-value=2.5e-17 Score=159.58 Aligned_cols=266 Identities=29% Similarity=0.336 Sum_probs=173.7
Q ss_pred CCcEEeCCCceecccCcccccCCCCCceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEecc
Q 037302 68 NLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLD 147 (408)
Q Consensus 68 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 147 (408)
.-..|+++.+.+. .+|..+. ++|+.|++.+|+++.++ . .+++|++|++++|.++. ++. ..++|+.|+++
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~LP-~---lp~~Lk~LdLs~N~Lts-LP~---lp~sL~~L~Ls 270 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLP-A---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIF 270 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCCCC-C---CCCCCcEEEecCCccCc-ccC---cccccceeecc
Confidence 4556777777776 4555443 46788888887776442 2 25778888888887763 332 24677888888
Q ss_pred CCcccCcCchhhccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCC
Q 037302 148 NNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPI 227 (408)
Q Consensus 148 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~ 227 (408)
+|.+.. ++. ..++|+.|++++|.+.. ++. ..++|+.|++++|.+... +. .+..|+.|.+++|.+.. +
T Consensus 271 ~N~L~~-Lp~---lp~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~L-p~---lp~~L~~L~Ls~N~L~~-L 337 (788)
T PRK15387 271 SNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTS-L 337 (788)
T ss_pred CCchhh-hhh---chhhcCEEECcCCcccc-ccc---cccccceeECCCCccccC-CC---CcccccccccccCcccc-c
Confidence 777662 222 13567778888877653 222 346788888888877642 22 23457777777777754 2
Q ss_pred CcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCC
Q 037302 228 PPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCS 307 (408)
Q Consensus 228 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 307 (408)
|. ...+|+.|++++|.+... +.. .++|+.|.+++|.+.. ++. ...+|+.|++++|.++. .+.. .+
T Consensus 338 P~---lp~~Lq~LdLS~N~Ls~L-P~l---p~~L~~L~Ls~N~L~~-LP~---l~~~L~~LdLs~N~Lt~-LP~l---~s 402 (788)
T PRK15387 338 PT---LPSGLQELSVSDNQLASL-PTL---PSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LPVL---PS 402 (788)
T ss_pred cc---cccccceEecCCCccCCC-CCC---Ccccceehhhcccccc-Ccc---cccccceEEecCCcccC-CCCc---cc
Confidence 22 124788888888877642 221 3567778888777663 222 23578888888888773 3322 25
Q ss_pred CCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCCccccC
Q 037302 308 QLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVRI 377 (408)
Q Consensus 308 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~ 377 (408)
+|+.|++++|++.. ++.. ..+|+.|++++|+++ .+|..+..+++|+.|++++|++.+..|..+..
T Consensus 403 ~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 403 ELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred CCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence 78888888888774 3332 246778888888887 66777778888888888888888776665533
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.73 E-value=5.8e-17 Score=157.01 Aligned_cols=265 Identities=27% Similarity=0.309 Sum_probs=198.0
Q ss_pred CCCceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEc
Q 037302 91 KDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYL 170 (408)
Q Consensus 91 ~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 170 (408)
..-..|+++.+.++.+ |..+. ++|+.|.+.+|.++. ++. .+++|++|++++|.++. ++. ..++|+.|++
T Consensus 201 ~~~~~LdLs~~~LtsL-P~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lts-LP~---lp~sL~~L~L 269 (788)
T PRK15387 201 NGNAVLNVGESGLTTL-PDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSI 269 (788)
T ss_pred CCCcEEEcCCCCCCcC-Ccchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCc-ccC---cccccceeec
Confidence 4577899999988854 44453 589999999998874 333 36899999999999884 333 2478999999
Q ss_pred CCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCccccc
Q 037302 171 AYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGL 250 (408)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 250 (408)
++|.+.. ++. ...+|+.|++.+|.+... +. .++.|+.|++++|.+... +.. ...|+.|.+++|.+..
T Consensus 270 s~N~L~~-Lp~---lp~~L~~L~Ls~N~Lt~L-P~---~p~~L~~LdLS~N~L~~L-p~l---p~~L~~L~Ls~N~L~~- 336 (788)
T PRK15387 270 FSNPLTH-LPA---LPSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLASL-PAL---PSELCKLWAYNNQLTS- 336 (788)
T ss_pred cCCchhh-hhh---chhhcCEEECcCCccccc-cc---cccccceeECCCCccccC-CCC---cccccccccccCcccc-
Confidence 9998763 222 236788999999988743 22 357899999999988753 322 3568899999998874
Q ss_pred CCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccC
Q 037302 251 LPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNL 330 (408)
Q Consensus 251 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 330 (408)
.+. ...+|+.|++++|.+... +. ..++|+.|++++|.+.. ++.. ..+|+.|++++|.+.. .+.. .
T Consensus 337 LP~---lp~~Lq~LdLS~N~Ls~L-P~---lp~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l---~ 401 (788)
T PRK15387 337 LPT---LPSGLQELSVSDNQLASL-PT---LPSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL---P 401 (788)
T ss_pred ccc---cccccceEecCCCccCCC-CC---CCcccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc---c
Confidence 332 125899999999998743 32 24689999999999884 4432 3579999999999884 3332 3
Q ss_pred CCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCCcccc---CCCeEEccCCccCCCCCCCcCCC
Q 037302 331 THLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVR---IIPKLIVSENNLELENSTSSENA 399 (408)
Q Consensus 331 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~---~l~~l~l~~n~~~~~~~~~~~~~ 399 (408)
++|+.|++++|+++ .+|.. ..+|+.|++++|+++. +|..+. ++..|++++|++++.+|..+..+
T Consensus 402 s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt~-LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l 468 (788)
T PRK15387 402 SELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSERTLQALREI 468 (788)
T ss_pred cCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCcccc-cChHHhhccCCCeEECCCCCCCchHHHHHHHH
Confidence 68999999999998 45643 3578999999999985 566555 56699999999999988877443
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.70 E-value=6.4e-19 Score=159.20 Aligned_cols=56 Identities=32% Similarity=0.392 Sum_probs=25.9
Q ss_pred EeCCCceec-ccCcccccCCCCCceeecCCcccccc----CCCcCCCCCCCCEEEcCCCee
Q 037302 72 LDLSNNILN-GSIPLEFGNLKDLDALRLRGNKLDGL----IPSSIGNLTNLTHLDLSLNQL 127 (408)
Q Consensus 72 L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~i~~~----~~~~l~~l~~L~~L~l~~~~~ 127 (408)
|+|.++.+. ......+..+.+|++++++++.++.. .+..+...+++++++++++.+
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~ 63 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNET 63 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEecccccc
Confidence 444444443 22334444555566666666654321 122233444455555554433
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.68 E-value=1.3e-18 Score=157.11 Aligned_cols=110 Identities=24% Similarity=0.260 Sum_probs=58.8
Q ss_pred CCCCCEEeCCCCccccc----CCccccCCCCCcEEeCCCCccccCCCcCCc-----CCCCCcEEEcCCCccCCc----CC
Q 037302 258 LKYLDSLSLDGNNLIGS----IPPTIGYLTNLTSLNLGYNQLSSSIPPELM-----NCSQLQNLVLSHNTLSGI----VP 324 (408)
Q Consensus 258 ~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~----~~ 324 (408)
.++|+.|++++|.+.+. ....+..+++|++|++++|.+++.....+. ..+.|++|++++|.+++. ..
T Consensus 192 ~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~ 271 (319)
T cd00116 192 NCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLA 271 (319)
T ss_pred CCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHH
Confidence 34555555555544322 122344556666666666665532111111 236777777777766521 12
Q ss_pred cccccCCCccEEEcCCccccccC----CcCCCCC-CCccEEeCCCCcc
Q 037302 325 PEIGNLTHLRQLDLSHNFINGTI----PSQLGYI-PNISAVDLSKNNL 367 (408)
Q Consensus 325 ~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~-~~L~~L~l~~~~l 367 (408)
..+..+++|+.+++++|.+.+.. ...+... +.|+++++.++++
T Consensus 272 ~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 272 EVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 33345567777777777777442 2223333 5777777777653
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.61 E-value=4.9e-15 Score=144.55 Aligned_cols=256 Identities=26% Similarity=0.431 Sum_probs=143.0
Q ss_pred CCceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcC
Q 037302 92 DLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLA 171 (408)
Q Consensus 92 ~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 171 (408)
+...|++++..++.+ |..+ .++++.|++++|.+.. ++..+. ++|++|++++|.++. ++..+ .+.|+.|+++
T Consensus 179 ~~~~L~L~~~~LtsL-P~~I--p~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lts-LP~~l--~~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKILGLTTI-PACI--PEQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLTS-IPATL--PDTIQEMELS 249 (754)
T ss_pred CceEEEeCCCCcCcC-Cccc--ccCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCcccc-CChhh--hccccEEECc
Confidence 355666666555533 2222 2456666666666652 333222 356666666666552 23222 2356666666
Q ss_pred CCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccC
Q 037302 172 YNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLL 251 (408)
Q Consensus 172 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 251 (408)
+|.+.. ++..+ ..+|+.|++++|.+.. ++..+ ++.|+.|++++|.+... +..+ .++|+.|++++|.+.. .
T Consensus 250 ~N~L~~-LP~~l--~s~L~~L~Ls~N~L~~-LP~~l--~~sL~~L~Ls~N~Lt~L-P~~l--p~sL~~L~Ls~N~Lt~-L 319 (754)
T PRK15370 250 INRITE-LPERL--PSALQSLDLFHNKISC-LPENL--PEELRYLSVYDNSIRTL-PAHL--PSGITHLNVQSNSLTA-L 319 (754)
T ss_pred CCccCc-CChhH--hCCCCEEECcCCccCc-ccccc--CCCCcEEECCCCccccC-cccc--hhhHHHHHhcCCcccc-C
Confidence 666552 23222 2356666666666552 23222 24667777777666542 2222 2467777777776663 2
Q ss_pred CccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCC
Q 037302 252 PREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLT 331 (408)
Q Consensus 252 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 331 (408)
+..+ .++|+.|.+++|.+.. .+..+ +++|+.|++++|.+. ..+..+. ++|+.|++++|.+.. .+..+. +
T Consensus 320 P~~l--~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~-LP~~l~--~ 388 (754)
T PRK15370 320 PETL--PPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTN-LPENLP--A 388 (754)
T ss_pred Cccc--cccceeccccCCcccc-CChhh--cCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCC-CCHhHH--H
Confidence 2222 2567777777777653 33222 367888888887776 3343332 578888888887763 333332 3
Q ss_pred CccEEEcCCccccccCCcC----CCCCCCccEEeCCCCccCCcCCccccCCCeE
Q 037302 332 HLRQLDLSHNFINGTIPSQ----LGYIPNISAVDLSKNNLSGVVPASVRIIPKL 381 (408)
Q Consensus 332 ~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~l 381 (408)
.|+.|++++|++. .+|.. ...++.+..+++.+|++. ...+.+++.+
T Consensus 389 sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls---~~tl~~L~~L 438 (754)
T PRK15370 389 ALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS---ERTIQNMQRL 438 (754)
T ss_pred HHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc---HHHHHHHHHh
Confidence 6778888888777 44433 233467778888888775 2344444444
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.57 E-value=1.4e-14 Score=141.39 Aligned_cols=245 Identities=28% Similarity=0.473 Sum_probs=166.3
Q ss_pred CCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEe
Q 037302 115 TNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLL 194 (408)
Q Consensus 115 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 194 (408)
.+...|++++..+.. +|..+ .+.++.|++++|.++. ++..+. ++|+.|++++|.+.. ++..+ .++|+.|++
T Consensus 178 ~~~~~L~L~~~~Lts-LP~~I--p~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lts-LP~~l--~~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILGLTT-IPACI--PEQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLTS-IPATL--PDTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCCcCc-CCccc--ccCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCcccc-CChhh--hccccEEEC
Confidence 356778888877763 34433 3578899999888874 444333 588999998887763 33322 357888999
Q ss_pred cCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCccccc
Q 037302 195 NRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGS 274 (408)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 274 (408)
++|.+.. ++..+ +..|+.|++++|.+.. .+..+. ++|+.|++++|.+.. .+..+ .++|+.|++++|.+...
T Consensus 249 s~N~L~~-LP~~l--~s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l--p~sL~~L~Ls~N~Lt~L 319 (754)
T PRK15370 249 SINRITE-LPERL--PSALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRT-LPAHL--PSGITHLNVQSNSLTAL 319 (754)
T ss_pred cCCccCc-CChhH--hCCCCEEECcCCccCc-cccccC--CCCcEEECCCCcccc-Ccccc--hhhHHHHHhcCCccccC
Confidence 8888763 33333 3578889998888774 344332 578999999888774 33222 24688888888877643
Q ss_pred CCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCC
Q 037302 275 IPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYI 354 (408)
Q Consensus 275 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 354 (408)
+.. ..++|+.|++++|.++. .+..+. ++|+.|++++|++. ..+..+ .++|+.|++++|.++ .+|..+.
T Consensus 320 -P~~--l~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~-- 387 (754)
T PRK15370 320 -PET--LPPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NLPENLP-- 387 (754)
T ss_pred -Ccc--ccccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CCCHhHH--
Confidence 222 23688899999888874 443333 68999999998887 344444 268899999999888 4454432
Q ss_pred CCccEEeCCCCccCCcCCccc-------cCCCeEEccCCccCC
Q 037302 355 PNISAVDLSKNNLSGVVPASV-------RIIPKLIVSENNLEL 390 (408)
Q Consensus 355 ~~L~~L~l~~~~l~~~~~~~~-------~~l~~l~l~~n~~~~ 390 (408)
.+|+.|++++|++..+ |+.+ ..+.+|++.+|+++.
T Consensus 388 ~sL~~LdLs~N~L~~L-P~sl~~~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 388 AALQIMQASRNNLVRL-PESLPHFRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred HHHHHHhhccCCcccC-chhHHHHhhcCCCccEEEeeCCCccH
Confidence 4688889999988754 4332 334588999998863
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.41 E-value=3.8e-15 Score=113.99 Aligned_cols=157 Identities=34% Similarity=0.573 Sum_probs=106.1
Q ss_pred hccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCceeecCCccccccCCCcCCCCCCCC
Q 037302 39 IGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLT 118 (408)
Q Consensus 39 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~ 118 (408)
+..+.+.+.|.+++++++ ..+-.+..+.+|++|+++++++. .+|..+..+++|+.|++.-+++. +.|..|+.++.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 444556667777777766 44555667777777777777776 56666777777777777766655 6667777777777
Q ss_pred EEEcCCCeec-ccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCc
Q 037302 119 HLDLSLNQLS-GRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRN 197 (408)
Q Consensus 119 ~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 197 (408)
.|++..|.+. ...|..|..+..|+.|+++++.+. +++..++++++|+.|.+..|++. ..+..+..+..|++|++.+|
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence 7777776553 345555666677777777777766 56666777777777777776655 34555666666777777666
Q ss_pred ccc
Q 037302 198 SLT 200 (408)
Q Consensus 198 ~~~ 200 (408)
.+.
T Consensus 184 rl~ 186 (264)
T KOG0617|consen 184 RLT 186 (264)
T ss_pred eee
Confidence 654
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.40 E-value=3.9e-15 Score=113.92 Aligned_cols=157 Identities=32% Similarity=0.485 Sum_probs=138.4
Q ss_pred cCCCCCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCc
Q 037302 15 FTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLD 94 (408)
Q Consensus 15 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 94 (408)
+-+++++++|.++.+.+. .+|..++.+.+|+.|.+.+++++ .+|..++.+++|+.|++.-+++. ..|..|+.+|-|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 445678899999999988 56667999999999999999998 78889999999999999988887 8899999999999
Q ss_pred eeecCCcccc-ccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCC
Q 037302 95 ALRLRGNKLD-GLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYN 173 (408)
Q Consensus 95 ~L~l~~~~i~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 173 (408)
.|++..+++. ...|..|..++.|+.|.++.|.+. ..|..++.+.+|+.|.+.++.+- .++..++.+..|++|++.+|
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence 9999988764 557777888999999999999988 77888999999999999999876 67888999999999999999
Q ss_pred cCC
Q 037302 174 NLV 176 (408)
Q Consensus 174 ~~~ 176 (408)
.+.
T Consensus 184 rl~ 186 (264)
T KOG0617|consen 184 RLT 186 (264)
T ss_pred eee
Confidence 876
No 23
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.27 E-value=8.7e-14 Score=118.45 Aligned_cols=246 Identities=19% Similarity=0.204 Sum_probs=153.8
Q ss_pred CCCCCCCCEEEcCCCeecccCc----ccccCCCCCceEeccCCccc---C-------cCchhhccCCCCCEEEcCCCcCC
Q 037302 111 IGNLTNLTHLDLSLNQLSGRLP----QEVGNLKNLLSLFLDNNNLT---G-------PIPSTLYHLNQLSNLYLAYNNLV 176 (408)
Q Consensus 111 l~~l~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~---~-------~~~~~~~~~~~L~~L~l~~~~~~ 176 (408)
+..+..+..+++++|.+..... ..++..+.|+..++++-... . .+...+..+|+|+++++++|-+.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 4556788888888888764333 33455677777777653211 1 12233445667777777777654
Q ss_pred CCCCc----cccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccC-
Q 037302 177 GPLPK----EVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLL- 251 (408)
Q Consensus 177 ~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~- 251 (408)
...+. .+..+..|++|.+.+|.+.......++ ..|..+. .....+..+.|+.+..+.|.+.+..
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~--~al~~l~---------~~kk~~~~~~Lrv~i~~rNrlen~ga 174 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLG--RALFELA---------VNKKAASKPKLRVFICGRNRLENGGA 174 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHH--HHHHHHH---------HHhccCCCcceEEEEeeccccccccH
Confidence 43322 234456666666666655421111110 0111111 0112334578888888888766433
Q ss_pred ---CccccCCCCCCEEeCCCCccccc----CCccccCCCCCcEEeCCCCccccC----CCcCCcCCCCCcEEEcCCCccC
Q 037302 252 ---PREVGNLKYLDSLSLDGNNLIGS----IPPTIGYLTNLTSLNLGYNQLSSS----IPPELMNCSQLQNLVLSHNTLS 320 (408)
Q Consensus 252 ---~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~ 320 (408)
...|...+.|+++.+.++.+... ....+.+|++|+.|++.+|-++.. ....+..+++|++|++++|.+.
T Consensus 175 ~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 175 TALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred HHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence 34456678899999988887543 234567889999999999887643 3345667888999999999876
Q ss_pred CcCCccc-----ccCCCccEEEcCCcccccc----CCcCCCCCCCccEEeCCCCcc
Q 037302 321 GIVPPEI-----GNLTHLRQLDLSHNFINGT----IPSQLGYIPNISAVDLSKNNL 367 (408)
Q Consensus 321 ~~~~~~~-----~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~l 367 (408)
.....++ ...|+|+.+.+.+|.++.. +..++...+.|+.|++++|.+
T Consensus 255 ~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 255 NEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 5444333 2468999999999988853 233445578899999999988
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.20 E-value=7.2e-13 Score=112.94 Aligned_cols=233 Identities=21% Similarity=0.229 Sum_probs=148.5
Q ss_pred ccCCCCCceeecCCccccc----cCCCcCCCCCCCCEEEcCCC---eecccCc-------ccccCCCCCceEeccCCccc
Q 037302 87 FGNLKDLDALRLRGNKLDG----LIPSSIGNLTNLTHLDLSLN---QLSGRLP-------QEVGNLKNLLSLFLDNNNLT 152 (408)
Q Consensus 87 ~~~l~~L~~L~l~~~~i~~----~~~~~l~~l~~L~~L~l~~~---~~~~~~~-------~~~~~l~~L~~L~l~~~~~~ 152 (408)
......++++++++|.+.. .....+.+.++|+..++++- +.....+ .++..+|+|+++++++|.+.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 4567889999999998742 23344667789999988763 2222223 34567889999999999876
Q ss_pred CcCch----hhccCCCCCEEEcCCCcCCCCCC-------------ccccCCCCCCEEEecCcccccc----cCccccccc
Q 037302 153 GPIPS----TLYHLNQLSNLYLAYNNLVGPLP-------------KEVGNMKNLDSLLLNRNSLTGP----IPSTIGYLN 211 (408)
Q Consensus 153 ~~~~~----~~~~~~~L~~L~l~~~~~~~~~~-------------~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~ 211 (408)
...+. .+.++..|++|.+.+|.+..... ......+.|+++...+|.+.+. +...+...+
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~ 185 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHP 185 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcc
Confidence 44333 45678999999999998753221 2234467788888877776432 234556667
Q ss_pred ccCeEEccCCcCCCCC----CcccCCCCCccEEEccCCccccc----CCccccCCCCCCEEeCCCCcccccCCcc-----
Q 037302 212 LGGKLDLSHNRLDSPI----PPTIGNLTNLTSLDLSSNQLSGL----LPREVGNLKYLDSLSLDGNNLIGSIPPT----- 278 (408)
Q Consensus 212 ~L~~l~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~----- 278 (408)
.++.+.+..+.+.... ...+..|++|+.|++.+|.++.. ....++.+++|+++++++|.+...-..+
T Consensus 186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al 265 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDAL 265 (382)
T ss_pred ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHH
Confidence 7888888777664322 23456677777777777766533 2334556677777777777665332211
Q ss_pred ccCCCCCcEEeCCCCccccCCC----cCCcCCCCCcEEEcCCCcc
Q 037302 279 IGYLTNLTSLNLGYNQLSSSIP----PELMNCSQLQNLVLSHNTL 319 (408)
Q Consensus 279 ~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~ 319 (408)
-...|+|+++.+.+|.|+.... ..+...|.|+.|++++|++
T Consensus 266 ~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 266 KESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred hccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 1235677777777776653211 1222346666666666666
No 25
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.19 E-value=1.1e-11 Score=123.29 Aligned_cols=135 Identities=26% Similarity=0.292 Sum_probs=99.0
Q ss_pred cccCCCCCCcEEEcCCCccccccchhhccCCCCcEEeCCCCc--CCCCCcccccCCCCCcEEeCCCceecccCcccccCC
Q 037302 13 LNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNS--LTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNL 90 (408)
Q Consensus 13 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 90 (408)
....+....+++.+.++.+.. .+. -..++.|++|-+.++. +.......|..++.|++|++++|.-...+|..++.+
T Consensus 517 ~~~~~~~~~rr~s~~~~~~~~-~~~-~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~L 594 (889)
T KOG4658|consen 517 PQVKSWNSVRRMSLMNNKIEH-IAG-SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGEL 594 (889)
T ss_pred ccccchhheeEEEEeccchhh-ccC-CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhh
Confidence 344455667777777776642 222 2445688898888875 444555557889999999999877666888888999
Q ss_pred CCCceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCc
Q 037302 91 KDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNN 150 (408)
Q Consensus 91 ~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 150 (408)
.+||+|+++++.+. ..|..+.++..|.+|++..+......+.....+++|++|.+....
T Consensus 595 i~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 595 VHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred hhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 99999999998887 667778888899999988876543445666668888888887554
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=3.5e-12 Score=111.88 Aligned_cols=207 Identities=24% Similarity=0.236 Sum_probs=90.0
Q ss_pred CCCCCEEEcCCCcCCCCCC-ccccCCCCCCEEEecCccccc--ccCcccccccccCeEEccCCcCCCCCCcc-cCCCCCc
Q 037302 162 LNQLSNLYLAYNNLVGPLP-KEVGNMKNLDSLLLNRNSLTG--PIPSTIGYLNLGGKLDLSHNRLDSPIPPT-IGNLTNL 237 (408)
Q Consensus 162 ~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~l~l~~~~~~~~~~~~-l~~~~~L 237 (408)
+.+|+.+.+.++.+..... .....+++++.|+++.|-+.. ........+|+|+.|+++.|++....... -..+++|
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 3344444444444332211 233444555555555443321 11222334455555555554433211110 1133555
Q ss_pred cEEEccCCcccccCC-ccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCC-CcCCcCCCCCcEEEcC
Q 037302 238 TSLDLSSNQLSGLLP-REVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSI-PPELMNCSQLQNLVLS 315 (408)
Q Consensus 238 ~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~ 315 (408)
+.|.+++|.++.... .....+|+|+.|.+.+|...........-++.|+.|+|++|++.... ......+|.|+.|+++
T Consensus 200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls 279 (505)
T KOG3207|consen 200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLS 279 (505)
T ss_pred heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcc
Confidence 556666655542211 12234556666666555321111122233455666666665544221 1223445556666666
Q ss_pred CCccCCcCCccc------ccCCCccEEEcCCcccccc-CCcCCCCCCCccEEeCCCCccC
Q 037302 316 HNTLSGIVPPEI------GNLTHLRQLDLSHNFINGT-IPSQLGYIPNISAVDLSKNNLS 368 (408)
Q Consensus 316 ~~~~~~~~~~~~------~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~ 368 (408)
.|.+.++..... ..+++|+.|++..|++.+- ....++..++|+.+.+.+|++.
T Consensus 280 ~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 280 STGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 655543322221 3445666666666655421 1123444555555555555553
No 27
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.11 E-value=4.2e-11 Score=119.16 Aligned_cols=182 Identities=26% Similarity=0.306 Sum_probs=107.5
Q ss_pred CCCCCCcEEEcCCCc--cccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCC
Q 037302 16 TCFPNLESIIIPYTL--LSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDL 93 (408)
Q Consensus 16 ~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 93 (408)
.++|.|++|-+.++. +.......|..++.|+.|++++|.--..+|..++.+-+|++|+++++.+. .+|..+.++..|
T Consensus 542 ~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L 620 (889)
T KOG4658|consen 542 SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKL 620 (889)
T ss_pred CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhh
Confidence 344578888877764 33223334677888888888877655577888888888888888888877 778888888888
Q ss_pred ceeecCCccccccCCCcCCCCCCCCEEEcCCCeec--ccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCE----
Q 037302 94 DALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLS--GRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSN---- 167 (408)
Q Consensus 94 ~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~---- 167 (408)
.+|++..+......+.....+++|++|.+...... ......+..+.+|+.+.+..... .....+..++.|..
T Consensus 621 ~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~ 698 (889)
T KOG4658|consen 621 IYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQS 698 (889)
T ss_pred heeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHh
Confidence 88888876543344555666888888887665421 11222334444444444432221 11111222333332
Q ss_pred EEcCCCcCCCCCCccccCCCCCCEEEecCccccc
Q 037302 168 LYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTG 201 (408)
Q Consensus 168 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 201 (408)
+.+..+... .....+..+.+|++|.+.++.+.+
T Consensus 699 l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 699 LSIEGCSKR-TLISSLGSLGNLEELSILDCGISE 731 (889)
T ss_pred hhhcccccc-eeecccccccCcceEEEEcCCCch
Confidence 222222211 223345667778888887777653
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=1.5e-11 Score=107.95 Aligned_cols=207 Identities=25% Similarity=0.241 Sum_probs=147.6
Q ss_pred cCCCCCCEEEecCcccccccC-cccccccccCeEEccCCcCCCC--CCcccCCCCCccEEEccCCcccccC-CccccCCC
Q 037302 184 GNMKNLDSLLLNRNSLTGPIP-STIGYLNLGGKLDLSHNRLDSP--IPPTIGNLTNLTSLDLSSNQLSGLL-PREVGNLK 259 (408)
Q Consensus 184 ~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~ 259 (408)
+++.+|+.+.++++.+..... .....++.++.|+++.+-+... .......+|+|+.|+++.|.+.... ...-..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 457788999999887753322 4667899999999999865543 2234567899999999998665221 11122568
Q ss_pred CCCEEeCCCCccccc-CCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcC-CcccccCCCccEEE
Q 037302 260 YLDSLSLDGNNLIGS-IPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIV-PPEIGNLTHLRQLD 337 (408)
Q Consensus 260 ~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~ 337 (408)
+|+.|.+++|++.-. +......+|+|+.|++..|..-.........+..|++|+|++|.+.... ......++.|+.|.
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 899999999998632 3344668999999999999532233333445678999999999875332 24556789999999
Q ss_pred cCCcccccc-CCcC-----CCCCCCccEEeCCCCccCCcC----CccccCCCeEEccCCccCC
Q 037302 338 LSHNFINGT-IPSQ-----LGYIPNISAVDLSKNNLSGVV----PASVRIIPKLIVSENNLEL 390 (408)
Q Consensus 338 l~~~~~~~~-~~~~-----~~~~~~L~~L~l~~~~l~~~~----~~~~~~l~~l~l~~n~~~~ 390 (408)
++.|.+.+. .|.+ ...+++|++|++..|++..+. -+...+++.+.+..|+++.
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 999999864 3333 346799999999999996553 2445566677777887753
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.06 E-value=6.6e-11 Score=94.55 Aligned_cols=124 Identities=30% Similarity=0.409 Sum_probs=43.8
Q ss_pred CCCCccEEEccCCcccccCCcccc-CCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCC-cCCCCCc
Q 037302 233 NLTNLTSLDLSSNQLSGLLPREVG-NLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPEL-MNCSQLQ 310 (408)
Q Consensus 233 ~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~ 310 (408)
++.++++|+++++.+... ..+. .+.+|+.|++++|.+... ..+..+++|++|++++|.++.. ...+ ..+|+|+
T Consensus 17 n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--
T ss_pred cccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcc-ccchHHhCCcCC
Confidence 345677777777776632 2233 456778888888877643 3466677888888888888743 2233 3577888
Q ss_pred EEEcCCCccCCcCC-cccccCCCccEEEcCCccccccCC---cCCCCCCCccEEe
Q 037302 311 NLVLSHNTLSGIVP-PEIGNLTHLRQLDLSHNFINGTIP---SQLGYIPNISAVD 361 (408)
Q Consensus 311 ~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~ 361 (408)
+|.+++|++.+... ..+..+++|+.|++.+|++++... ..+..+|+|+.|+
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 88888887765332 455677888888888888874411 1344578888765
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.05 E-value=6.2e-11 Score=99.34 Aligned_cols=133 Identities=27% Similarity=0.352 Sum_probs=102.1
Q ss_pred CCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEE
Q 037302 233 NLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNL 312 (408)
Q Consensus 233 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 312 (408)
....|+++++++|.+. .+.....-.|.++.|++++|.+... ..+..+++|..|++++|.++. ...+-..+.++++|
T Consensus 282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTL 357 (490)
T ss_pred hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHh-hhhhHhhhcCEeee
Confidence 3467888999998876 5556667778999999999988743 337788899999999988773 33333456788999
Q ss_pred EcCCCccCCcCCcccccCCCccEEEcCCcccccc-CCcCCCCCCCccEEeCCCCccCCcC
Q 037302 313 VLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGT-IPSQLGYIPNISAVDLSKNNLSGVV 371 (408)
Q Consensus 313 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~~~~ 371 (408)
.+.+|.+... ..+.++-+|..||+++|++.+. ....++++|-|+.+.+.+|++.++.
T Consensus 358 ~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 358 KLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred ehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 9999988633 4567778899999999988854 2356788899999999999998753
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.99 E-value=4.7e-10 Score=89.69 Aligned_cols=106 Identities=29% Similarity=0.405 Sum_probs=24.0
Q ss_pred CCCceeecCCccccccCCCcCC-CCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEE
Q 037302 91 KDLDALRLRGNKLDGLIPSSIG-NLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLY 169 (408)
Q Consensus 91 ~~L~~L~l~~~~i~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 169 (408)
.++++|++.++.|+.+ +.+. .+.+|+.|++++|.+... ..+..++.|++|++++|.++.........+|+|++|.
T Consensus 19 ~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 19 VKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred cccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 3445555555544433 2232 244555555555555422 2344455555555555555432221112345555555
Q ss_pred cCCCcCCCC-CCccccCCCCCCEEEecCcccc
Q 037302 170 LAYNNLVGP-LPKEVGNMKNLDSLLLNRNSLT 200 (408)
Q Consensus 170 l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~ 200 (408)
+++|.+... ....++.+++|++|++.+|++.
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 555554321 1123444555555555555543
No 32
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.91 E-value=1.3e-09 Score=71.58 Aligned_cols=61 Identities=41% Similarity=0.628 Sum_probs=39.8
Q ss_pred CCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCcc
Q 037302 307 SQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNL 367 (408)
Q Consensus 307 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 367 (408)
|+|++|++++|++..+....|..+++|++|++++|.++...+.+|..+++|+.|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4566666666666655556666666666666666666655556666666666666666654
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.85 E-value=9.1e-10 Score=92.45 Aligned_cols=130 Identities=25% Similarity=0.265 Sum_probs=101.0
Q ss_pred ccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCcc
Q 037302 255 VGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLR 334 (408)
Q Consensus 255 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 334 (408)
+..+..|+++++++|.+. .+-..+.-.|.++.|+++.|.+..... +..+++|+.|++++|.++. ...+=.++.+++
T Consensus 280 ~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAE-CVGWHLKLGNIK 355 (490)
T ss_pred cchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHh-hhhhHhhhcCEe
Confidence 344578999999999887 344566778999999999999985433 6778999999999999874 345556788999
Q ss_pred EEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCC-ccccC---CCeEEccCCccCC
Q 037302 335 QLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVP-ASVRI---IPKLIVSENNLEL 390 (408)
Q Consensus 335 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~---l~~l~l~~n~~~~ 390 (408)
+|.+++|.+.+. ..++++=+|..|++++|+|..... +.+++ ++.+.+.+|++.+
T Consensus 356 tL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 356 TLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred eeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 999999988643 456677889999999999986643 33443 4488999999864
No 34
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.84 E-value=3e-09 Score=69.84 Aligned_cols=61 Identities=43% Similarity=0.591 Sum_probs=49.1
Q ss_pred CCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccc
Q 037302 283 TNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFI 343 (408)
Q Consensus 283 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 343 (408)
|+|++|++++|.+....+..|.++++|++|++++|++..+.+.+|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5678888888888877767788888888888888888877777888888888888888864
No 35
>PLN03150 hypothetical protein; Provisional
Probab=98.83 E-value=8.1e-09 Score=100.78 Aligned_cols=111 Identities=32% Similarity=0.494 Sum_probs=95.0
Q ss_pred CCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCC
Q 037302 284 NLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLS 363 (408)
Q Consensus 284 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 363 (408)
.++.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++++.+|..+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 37788999999888888888889999999999999988888888999999999999999998899989999999999999
Q ss_pred CCccCCcCCccccC----CCeEEccCCccCCCCCC
Q 037302 364 KNNLSGVVPASVRI----IPKLIVSENNLELENST 394 (408)
Q Consensus 364 ~~~l~~~~~~~~~~----l~~l~l~~n~~~~~~~~ 394 (408)
+|++.+..|..+.. +..+++.+|+..+..|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~ 533 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG 533 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCC
Confidence 99999998877654 33788888886665553
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.81 E-value=7.7e-09 Score=96.26 Aligned_cols=200 Identities=41% Similarity=0.605 Sum_probs=118.7
Q ss_pred EEEcCCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccc-cccCeEEccCCcCCCCCCcccCCCCCccEEEccCC
Q 037302 167 NLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYL-NLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSN 245 (408)
Q Consensus 167 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 245 (408)
.+....+.+.... ..+...+.++.+.+.++.+.+ .+...... +.++.++++++.+... +..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~~l-~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIESL-PSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCc-hhhhcccceeEEecCCccccc-Cccccccchhhcccccccccchhhh-hhhhhccccccccccCCc
Confidence 4555555542221 223445667777777777663 33333444 2677777777766532 234566777777777777
Q ss_pred cccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCc
Q 037302 246 QLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPP 325 (408)
Q Consensus 246 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 325 (408)
.+.+. +...+..+.|+.|+++++.+... +........|+++.+++|.+. ..+..+..+.++..+.+.++++... +.
T Consensus 174 ~l~~l-~~~~~~~~~L~~L~ls~N~i~~l-~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~-~~ 249 (394)
T COG4886 174 DLSDL-PKLLSNLSNLNNLDLSGNKISDL-PPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDL-PE 249 (394)
T ss_pred hhhhh-hhhhhhhhhhhheeccCCccccC-chhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeec-cc
Confidence 76633 22222556777777777776633 222234445777777777533 2334455566666666666666522 45
Q ss_pred ccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCCccc
Q 037302 326 EIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASV 375 (408)
Q Consensus 326 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~ 375 (408)
.+..++++++|++++|++++..+ +....+++.|+++++.+....|...
T Consensus 250 ~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 250 SIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred hhccccccceecccccccccccc--ccccCccCEEeccCccccccchhhh
Confidence 55666677777777777774433 6666777777777777766655443
No 37
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.79 E-value=3.4e-10 Score=102.87 Aligned_cols=169 Identities=34% Similarity=0.468 Sum_probs=102.1
Q ss_pred EEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCc
Q 037302 191 SLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNN 270 (408)
Q Consensus 191 ~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 270 (408)
..+++.|.+. ..+..++.+..|+.+.+..+.+. ..+..+..+..|..++++.|.+. ..+..++.++ |+.|.+++++
T Consensus 79 ~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNk 154 (722)
T KOG0532|consen 79 FADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNK 154 (722)
T ss_pred hhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCc
Confidence 3445555554 34455556666666666665554 34555666666666777666655 3333343332 6666666666
Q ss_pred ccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcC
Q 037302 271 LIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQ 350 (408)
Q Consensus 271 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 350 (408)
+. ..+..++..++|..|+.+.|++- ..+..+.++.+|+.|++..|++. ..++.+. .=.|..||++.|.+. .+|..
T Consensus 155 l~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis-~iPv~ 229 (722)
T KOG0532|consen 155 LT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKIS-YLPVD 229 (722)
T ss_pred cc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCcee-ecchh
Confidence 65 34444556667777777777666 44555666667777777777665 3344444 235667777777776 66667
Q ss_pred CCCCCCccEEeCCCCccC
Q 037302 351 LGYIPNISAVDLSKNNLS 368 (408)
Q Consensus 351 ~~~~~~L~~L~l~~~~l~ 368 (408)
|+.|+.|+.|-+.+|+++
T Consensus 230 fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 230 FRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred hhhhhhheeeeeccCCCC
Confidence 777777777777777776
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.79 E-value=1e-08 Score=95.41 Aligned_cols=201 Identities=38% Similarity=0.525 Sum_probs=143.4
Q ss_pred eEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCCCCccccCCC-CCCEEEecCcccccccCcccccccccCeEEccCC
Q 037302 143 SLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMK-NLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHN 221 (408)
Q Consensus 143 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 221 (408)
.+....+.+. .....+...+.++.+.+.++.+... +....... +|+.|+++++.+.. .+.....++.|+.|+++.|
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~~i-~~~~~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNITDI-PPLIGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCcccccC-ccccccchhhcccccccccchhh-hhhhhhccccccccccCCc
Confidence 4666666653 2233444557788888888887643 33345553 89999999988763 3356778899999999998
Q ss_pred cCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCc
Q 037302 222 RLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPP 301 (408)
Q Consensus 222 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 301 (408)
++..... .....+.|+.|+++++.+.. .+........|+++.+.++... ..+..+....++..+.+.++++.. .+.
T Consensus 174 ~l~~l~~-~~~~~~~L~~L~ls~N~i~~-l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~ 249 (394)
T COG4886 174 DLSDLPK-LLSNLSNLNNLDLSGNKISD-LPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPE 249 (394)
T ss_pred hhhhhhh-hhhhhhhhhheeccCCcccc-CchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccc
Confidence 8875432 23256889999999998873 3433344556899999888533 344556777888888888888773 355
Q ss_pred CCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCC
Q 037302 302 ELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLG 352 (408)
Q Consensus 302 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 352 (408)
.+..++++++|++++|.+..+.. +....+++.|+++++.+....+....
T Consensus 250 ~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~~~ 298 (394)
T COG4886 250 SIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLIAL 298 (394)
T ss_pred hhccccccceecccccccccccc--ccccCccCEEeccCccccccchhhhc
Confidence 67778889999999999885544 77888999999999988876665543
No 39
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.69 E-value=2e-10 Score=100.43 Aligned_cols=278 Identities=19% Similarity=0.126 Sum_probs=153.9
Q ss_pred CCCceeecCCcccccc--CCCcCCCCCCCCEEEcCCCee-cccCcccc-cCCCCCceEeccCCc-ccCcCch-hhccCCC
Q 037302 91 KDLDALRLRGNKLDGL--IPSSIGNLTNLTHLDLSLNQL-SGRLPQEV-GNLKNLLSLFLDNNN-LTGPIPS-TLYHLNQ 164 (408)
Q Consensus 91 ~~L~~L~l~~~~i~~~--~~~~l~~l~~L~~L~l~~~~~-~~~~~~~~-~~l~~L~~L~l~~~~-~~~~~~~-~~~~~~~ 164 (408)
-.|+.|.++++.-... .......++++++|.+.++.. ++.....+ ..+++|+++++..|. ++...-. ....|++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 3578888887752211 112234578888888877753 22111122 357788888887743 4432222 3345888
Q ss_pred CCEEEcCCCcCCCC-CC-ccccCCCCCCEEEecCccccc--ccCcccccccccCeEEccCCc-CCCCCC-cccCCCCCcc
Q 037302 165 LSNLYLAYNNLVGP-LP-KEVGNMKNLDSLLLNRNSLTG--PIPSTIGYLNLGGKLDLSHNR-LDSPIP-PTIGNLTNLT 238 (408)
Q Consensus 165 L~~L~l~~~~~~~~-~~-~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~l~l~~~~-~~~~~~-~~l~~~~~L~ 238 (408)
|+++++++|+-... .. .....+..++.+...+|.-.+ .+...-.+++-+.++++..|. +++... ..-..+..|+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 88888888754221 11 123445556666555543211 111222344455566654442 222211 1123466778
Q ss_pred EEEccCCcc-cccCCccc-cCCCCCCEEeCCCCcc-ccc-CCccccCCCCCcEEeCCCCcccc--CCCcCCcCCCCCcEE
Q 037302 239 SLDLSSNQL-SGLLPREV-GNLKYLDSLSLDGNNL-IGS-IPPTIGYLTNLTSLNLGYNQLSS--SIPPELMNCSQLQNL 312 (408)
Q Consensus 239 ~L~l~~~~~-~~~~~~~~-~~~~~L~~L~l~~~~~-~~~-~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L 312 (408)
.|+.++|.. ++.....+ .++++|+.+.+.+|.- ++. ....-.+++.|+.+++.++.... .....-.+|+.|+.+
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~l 377 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVL 377 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccC
Confidence 888877643 22222222 4678888888888763 222 22233467788888887775331 123334567888888
Q ss_pred EcCCCc-cCCcC----CcccccCCCccEEEcCCcccc-ccCCcCCCCCCCccEEeCCCCccC
Q 037302 313 VLSHNT-LSGIV----PPEIGNLTHLRQLDLSHNFIN-GTIPSQLGYIPNISAVDLSKNNLS 368 (408)
Q Consensus 313 ~l~~~~-~~~~~----~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~l~ 368 (408)
.++.|. +++.. ...-.....+..+.+++|+.+ +...+.+..|+.|+.+++.+|+-.
T Consensus 378 slshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 378 SLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDV 439 (483)
T ss_pred ChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhh
Confidence 888775 23221 112234567888888888544 445566777888888888888653
No 40
>PLN03150 hypothetical protein; Provisional
Probab=98.67 E-value=5.5e-08 Score=95.04 Aligned_cols=112 Identities=36% Similarity=0.574 Sum_probs=98.1
Q ss_pred CCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCC
Q 037302 261 LDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSH 340 (408)
Q Consensus 261 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 340 (408)
++.|+++++.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 77889999988877888889999999999999999888888899999999999999999988999999999999999999
Q ss_pred ccccccCCcCCCC-CCCccEEeCCCCccCCcCC
Q 037302 341 NFINGTIPSQLGY-IPNISAVDLSKNNLSGVVP 372 (408)
Q Consensus 341 ~~~~~~~~~~~~~-~~~L~~L~l~~~~l~~~~~ 372 (408)
|.+++.+|..+.. ..++..+++.+|+.....|
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCC
Confidence 9999999988765 3567889999997654333
No 41
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.67 E-value=1e-09 Score=99.78 Aligned_cols=190 Identities=33% Similarity=0.459 Sum_probs=148.2
Q ss_pred cEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCceeecCCc
Q 037302 22 ESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGN 101 (408)
Q Consensus 22 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 101 (408)
...+++.+.+. .+|..+..|..|..+.++.|.+. ..+..+.++..|..++++.|++. .+|..++.| -|+.|.+++|
T Consensus 78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkvli~sNN 153 (722)
T KOG0532|consen 78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKVLIVSNN 153 (722)
T ss_pred hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC-cceeEEEecC
Confidence 34566667666 67777888888999999888776 77888999999999999999987 777777766 4899999999
Q ss_pred cccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCCCCc
Q 037302 102 KLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPK 181 (408)
Q Consensus 102 ~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 181 (408)
+++ ..|..++..+.|.+++.+.|.+. ..+..+..+.+|+.+.+..|++. .++..+. .-.|..|+++.|++. .++-
T Consensus 154 kl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis-~iPv 228 (722)
T KOG0532|consen 154 KLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKIS-YLPV 228 (722)
T ss_pred ccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCcee-ecch
Confidence 887 55666888899999999999988 56677888899999999988877 4555556 345889999999887 4667
Q ss_pred cccCCCCCCEEEecCcccccccCccc---ccccccCeEEccCC
Q 037302 182 EVGNMKNLDSLLLNRNSLTGPIPSTI---GYLNLGGKLDLSHN 221 (408)
Q Consensus 182 ~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~l~l~~~ 221 (408)
.|..+.+|++|.+.+|.+.. .+..+ +...-.|+|+...|
T Consensus 229 ~fr~m~~Lq~l~LenNPLqS-PPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 229 DFRKMRHLQVLQLENNPLQS-PPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred hhhhhhhheeeeeccCCCCC-ChHHHHhccceeeeeeecchhc
Confidence 78999999999999998874 22222 22344566766665
No 42
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=1.5e-10 Score=96.85 Aligned_cols=177 Identities=26% Similarity=0.260 Sum_probs=103.7
Q ss_pred CCCEEEecCccccc-ccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCccccc--CCccccCCCCCCEE
Q 037302 188 NLDSLLLNRNSLTG-PIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGL--LPREVGNLKYLDSL 264 (408)
Q Consensus 188 ~L~~L~l~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L 264 (408)
.|+.++++...++. .....++.|.+|+.+.+.+.++++.+...++...+|+.|++++|+.-.. ....+..|..|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 46667776655532 2334556677777777777777665555666677777777777643211 12234567777777
Q ss_pred eCCCCccccc-CCccccC-CCCCcEEeCCCCccc--cC-CCcCCcCCCCCcEEEcCCCc-cCCcCCcccccCCCccEEEc
Q 037302 265 SLDGNNLIGS-IPPTIGY-LTNLTSLNLGYNQLS--SS-IPPELMNCSQLQNLVLSHNT-LSGIVPPEIGNLTHLRQLDL 338 (408)
Q Consensus 265 ~l~~~~~~~~-~~~~~~~-~~~L~~L~l~~~~~~--~~-~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l 338 (408)
+++.|..... ....+.+ -++|+.|+++|+.-. .. ......+||+|..|++++|. ++.-....|.+++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 7777765432 2222222 256777777776421 11 11223457777777777774 33222234456777777777
Q ss_pred CCccccccCCc---CCCCCCCccEEeCCCCc
Q 037302 339 SHNFINGTIPS---QLGYIPNISAVDLSKNN 366 (408)
Q Consensus 339 ~~~~~~~~~~~---~~~~~~~L~~L~l~~~~ 366 (408)
+.|... +|+ .+...|+|.+|++.||-
T Consensus 346 sRCY~i--~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 346 SRCYDI--IPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hhhcCC--ChHHeeeeccCcceEEEEecccc
Confidence 777542 333 34566777777777763
No 43
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.66 E-value=1.6e-10 Score=101.14 Aligned_cols=248 Identities=19% Similarity=0.108 Sum_probs=136.6
Q ss_pred CCCCCEEEcCCC-eecccCcc-cccCCCCCceEeccCCc-ccCcCch-hhccCCCCCEEEcCCCcCCCC--CCccccCCC
Q 037302 114 LTNLTHLDLSLN-QLSGRLPQ-EVGNLKNLLSLFLDNNN-LTGPIPS-TLYHLNQLSNLYLAYNNLVGP--LPKEVGNMK 187 (408)
Q Consensus 114 l~~L~~L~l~~~-~~~~~~~~-~~~~l~~L~~L~l~~~~-~~~~~~~-~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~ 187 (408)
|+.|+++++..| .++..... -...+++|++++++.+. +++.... ...++..++.+...+|.-... +...-+.++
T Consensus 189 C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~ 268 (483)
T KOG4341|consen 189 CRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCL 268 (483)
T ss_pred cchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccCh
Confidence 455555555442 22222222 12345666666666553 3321111 233455555555555432110 011112334
Q ss_pred CCCEEEecCcc-ccc-ccCcccccccccCeEEccCCcC-CCCCC-cccCCCCCccEEEccCCc-ccccCCcccc-CCCCC
Q 037302 188 NLDSLLLNRNS-LTG-PIPSTIGYLNLGGKLDLSHNRL-DSPIP-PTIGNLTNLTSLDLSSNQ-LSGLLPREVG-NLKYL 261 (408)
Q Consensus 188 ~L~~L~l~~~~-~~~-~~~~~~~~~~~L~~l~l~~~~~-~~~~~-~~l~~~~~L~~L~l~~~~-~~~~~~~~~~-~~~~L 261 (408)
.+..+++..|. +++ .....-..+..++.+..+++.. ++... ..-..+.+|+.+.+++|. +++.....++ .++.|
T Consensus 269 ~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~L 348 (483)
T KOG4341|consen 269 EILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHL 348 (483)
T ss_pred HhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhh
Confidence 44555544443 222 1223335677788888776643 22111 122457889999998884 4444444444 56889
Q ss_pred CEEeCCCCccccc--CCccccCCCCCcEEeCCCCc-cccCCCcCC----cCCCCCcEEEcCCCc-cCCcCCcccccCCCc
Q 037302 262 DSLSLDGNNLIGS--IPPTIGYLTNLTSLNLGYNQ-LSSSIPPEL----MNCSQLQNLVLSHNT-LSGIVPPEIGNLTHL 333 (408)
Q Consensus 262 ~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~----~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L 333 (408)
+.+++.++..... ....-.+|+.|+.+.++.|. +++.....+ .....|+.+.+++|+ +++...+.+..+++|
T Consensus 349 e~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~L 428 (483)
T KOG4341|consen 349 ERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNL 428 (483)
T ss_pred hhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCccc
Confidence 9999988864322 33445678999999999886 343322222 346789999999997 455556677889999
Q ss_pred cEEEcCCcc-ccccCCcCC-CCCCCccEEe
Q 037302 334 RQLDLSHNF-INGTIPSQL-GYIPNISAVD 361 (408)
Q Consensus 334 ~~L~l~~~~-~~~~~~~~~-~~~~~L~~L~ 361 (408)
+.+++.+|+ ++......+ ..+|+++..-
T Consensus 429 eri~l~~~q~vtk~~i~~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 429 ERIELIDCQDVTKEAISRFATHLPNIKVHA 458 (483)
T ss_pred ceeeeechhhhhhhhhHHHHhhCccceehh
Confidence 999999994 443333333 3567666543
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=4.9e-10 Score=93.92 Aligned_cols=180 Identities=23% Similarity=0.184 Sum_probs=94.7
Q ss_pred CceEeccCCcccC-cCchhhccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEcc
Q 037302 141 LLSLFLDNNNLTG-PIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLS 219 (408)
Q Consensus 141 L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~ 219 (408)
|++++++...++. .+...+..|.+|+.+.+.+..+.+.....++.-.+|+.|+++.+..
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG-------------------- 246 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSG-------------------- 246 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccc--------------------
Confidence 5555555444331 1222334455555555555555444434444445555555544421
Q ss_pred CCcCCCC-CCcccCCCCCccEEEccCCccccc-CCccccC-CCCCCEEeCCCCccc---ccCCccccCCCCCcEEeCCCC
Q 037302 220 HNRLDSP-IPPTIGNLTNLTSLDLSSNQLSGL-LPREVGN-LKYLDSLSLDGNNLI---GSIPPTIGYLTNLTSLNLGYN 293 (408)
Q Consensus 220 ~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~-~~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~ 293 (408)
++.. ..-.+..|+.|.+|+++.|..... .....++ -++|+.|+++|+.-. .........||+|.+|++++|
T Consensus 247 ---~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~ 323 (419)
T KOG2120|consen 247 ---FTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDS 323 (419)
T ss_pred ---cchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccc
Confidence 1111 111234556666666666644322 1122222 256777777766421 112233567888888888877
Q ss_pred cc-ccCCCcCCcCCCCCcEEEcCCCcc-CCcCCcccccCCCccEEEcCCccc
Q 037302 294 QL-SSSIPPELMNCSQLQNLVLSHNTL-SGIVPPEIGNLTHLRQLDLSHNFI 343 (408)
Q Consensus 294 ~~-~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~ 343 (408)
.. +......+-+++.|++|.++.|.. .-.....+...|+|.+|++.+|--
T Consensus 324 v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 324 VMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred cccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence 53 333334466778888888888863 212223456678899999988843
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.46 E-value=1.7e-08 Score=94.16 Aligned_cols=106 Identities=29% Similarity=0.313 Sum_probs=49.2
Q ss_pred CCCCCceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEE
Q 037302 89 NLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNL 168 (408)
Q Consensus 89 ~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 168 (408)
.+..++.+.++.+.+.. ....+..+.+|+.+++.++.+..+ ...+..+++|+++++++|.++.. ..+..++.|+.|
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccc--cchhhccchhhh
Confidence 34445555555554442 112244555666666666655422 11144455555555555555432 123334445555
Q ss_pred EcCCCcCCCCCCccccCCCCCCEEEecCcccc
Q 037302 169 YLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLT 200 (408)
Q Consensus 169 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 200 (408)
++.+|.+... ..+..++.|+.+++++|.+.
T Consensus 146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~ 175 (414)
T KOG0531|consen 146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIV 175 (414)
T ss_pred eeccCcchhc--cCCccchhhhcccCCcchhh
Confidence 5555554422 12333444555555554443
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.43 E-value=2.6e-08 Score=92.94 Aligned_cols=221 Identities=29% Similarity=0.345 Sum_probs=97.4
Q ss_pred cCCCCCceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCE
Q 037302 88 GNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSN 167 (408)
Q Consensus 88 ~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 167 (408)
..+.+|+.+++.++.+..+... +..+++|++|++++|.+... ..+..++.|+.|++.+|.+..+ ..+..++.|+.
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~ 166 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISDI--SGLESLKSLKL 166 (414)
T ss_pred ccccceeeeeccccchhhcccc-hhhhhcchheeccccccccc--cchhhccchhhheeccCcchhc--cCCccchhhhc
Confidence 3444555555555554433111 34455555555555555422 2334444455555555554422 22233455555
Q ss_pred EEcCCCcCCCCCC-ccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCC--CccEEEccC
Q 037302 168 LYLAYNNLVGPLP-KEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLT--NLTSLDLSS 244 (408)
Q Consensus 168 L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~--~L~~L~l~~ 244 (408)
+++++|.+...-. . ...+.+++.+++.++.+... ..+.....+..+.+..+.+....+ +.... +|+.+.+++
T Consensus 167 l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~ 241 (414)
T KOG0531|consen 167 LDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSG 241 (414)
T ss_pred ccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhccc
Confidence 5555555443211 1 24455555555555544321 122222233333444444432211 11112 266666666
Q ss_pred CcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCC---c-CCcCCCCCcEEEcCCCccC
Q 037302 245 NQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIP---P-ELMNCSQLQNLVLSHNTLS 320 (408)
Q Consensus 245 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~-~~~~~~~L~~L~l~~~~~~ 320 (408)
+.+.. ....+..+..+..+++..+.+... ..+...+.+..+....+.+..... . .....+.++.+.+.++...
T Consensus 242 n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (414)
T KOG0531|consen 242 NRISR-SPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIR 318 (414)
T ss_pred Ccccc-ccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccc
Confidence 65542 113344455666666665554322 223334444444554444331111 1 1334456666666666554
Q ss_pred C
Q 037302 321 G 321 (408)
Q Consensus 321 ~ 321 (408)
.
T Consensus 319 ~ 319 (414)
T KOG0531|consen 319 K 319 (414)
T ss_pred c
Confidence 3
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.43 E-value=2.5e-09 Score=100.05 Aligned_cols=128 Identities=30% Similarity=0.372 Sum_probs=92.0
Q ss_pred CccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcC
Q 037302 236 NLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLS 315 (408)
Q Consensus 236 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 315 (408)
.|...+.+.|.+. .....+.-++.++.|++++|++.+. ..+..+++|++|+|+.|.+....-....+|. |..|+++
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence 4555666666665 4455666678888888888888754 3677888888888888887744333344555 8888888
Q ss_pred CCccCCcCCcccccCCCccEEEcCCcccccc-CCcCCCCCCCccEEeCCCCccCC
Q 037302 316 HNTLSGIVPPEIGNLTHLRQLDLSHNFINGT-IPSQLGYIPNISAVDLSKNNLSG 369 (408)
Q Consensus 316 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~~ 369 (408)
+|.++.. ..+.++++|+.||+++|-+.+. ....++.+..|+.|++.||++-.
T Consensus 241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred ccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 8887633 4667788888999998877643 22345567788888999988864
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=5.9e-08 Score=81.65 Aligned_cols=183 Identities=23% Similarity=0.192 Sum_probs=76.4
Q ss_pred CCCCCcEEeCCCceecc--cCcccccCCCCCceeecCCccccccCCCcC-CCCCCCCEEEcCCCeecccC-cccccCCCC
Q 037302 65 SLRNLVELDLSNNILNG--SIPLEFGNLKDLDALRLRGNKLDGLIPSSI-GNLTNLTHLDLSLNQLSGRL-PQEVGNLKN 140 (408)
Q Consensus 65 ~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l-~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~ 140 (408)
.++.++.+++.+|.+.+ .....+.++|.|+.|+++.|.+..... .+ ....+|+.|.+.++.+.... ...+..+|.
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~-~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK-SLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc-cCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 34555555655555542 122223455666666665555432211 11 12345555555555443211 122334555
Q ss_pred CceEeccCCcccCcCch--hhcc-CCCCCEEEcCCCcCCCC--CCccccCCCCCCEEEecCcccccc-cCcccccccccC
Q 037302 141 LLSLFLDNNNLTGPIPS--TLYH-LNQLSNLYLAYNNLVGP--LPKEVGNMKNLDSLLLNRNSLTGP-IPSTIGYLNLGG 214 (408)
Q Consensus 141 L~~L~l~~~~~~~~~~~--~~~~-~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~ 214 (408)
++.++++.|........ .... .+.+++++...|..... ....-.-+|++.++.+..|++... .......+|.+.
T Consensus 148 vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~ 227 (418)
T KOG2982|consen 148 VTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLS 227 (418)
T ss_pred hhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcch
Confidence 55555555532211110 0111 22444444444432210 001112245555565555554321 112223334444
Q ss_pred eEEccCCcCCCCC-CcccCCCCCccEEEccCCccc
Q 037302 215 KLDLSHNRLDSPI-PPTIGNLTNLTSLDLSSNQLS 248 (408)
Q Consensus 215 ~l~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~ 248 (408)
.|++..+++.+.. .+.+.+++.|..|.++.+.+.
T Consensus 228 ~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 228 CLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred hhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 4555554444321 133455555555555555443
No 49
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.39 E-value=9e-07 Score=68.22 Aligned_cols=128 Identities=20% Similarity=0.277 Sum_probs=62.0
Q ss_pred ccccccccCCCCCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccc
Q 037302 8 AELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEF 87 (408)
Q Consensus 8 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 87 (408)
+.|+..+|.++++|+.+.+.. .+...-...|..+++|+.+.+.++ +.......|..++.++.+.+.. .+.......|
T Consensus 1 ~~i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F 77 (129)
T PF13306_consen 1 TSIGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAF 77 (129)
T ss_dssp -EE-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTT
T ss_pred CEECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccc
Confidence 357888999999999999874 344344456778878888888764 5545556677777777777765 2222334556
Q ss_pred cCCCCCceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCC
Q 037302 88 GNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNL 141 (408)
Q Consensus 88 ~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 141 (408)
..+++|+.+.+..+ +..+....|.++ .++.+.+.. .+..+....|.++++|
T Consensus 78 ~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 78 SNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp TT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 66777777777554 444444555555 666666654 2222334455555444
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=1.5e-07 Score=79.33 Aligned_cols=225 Identities=23% Similarity=0.220 Sum_probs=145.1
Q ss_pred CCCCCcEEeCCCceeccc-Ccccc-cCCCCCceeecCCcccccc--CCCcCCCCCCCCEEEcCCCeecccCcccccCCCC
Q 037302 65 SLRNLVELDLSNNILNGS-IPLEF-GNLKDLDALRLRGNKLDGL--IPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKN 140 (408)
Q Consensus 65 ~~~~L~~L~l~~~~~~~~-~~~~~-~~l~~L~~L~l~~~~i~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 140 (408)
....++.+.+.++.+..+ ....| ..+.+++.+++.+|.+... ....++++|.|+.|+++.|.+...+...-....+
T Consensus 43 s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~n 122 (418)
T KOG2982|consen 43 SLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKN 122 (418)
T ss_pred cccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccc
Confidence 344566777778877632 22223 3578999999999998743 2234678999999999999887433222245678
Q ss_pred CceEeccCCccc-CcCchhhccCCCCCEEEcCCCcCCCCCCc--cc-cCCCCCCEEEecCccccc--ccCcccccccccC
Q 037302 141 LLSLFLDNNNLT-GPIPSTLYHLNQLSNLYLAYNNLVGPLPK--EV-GNMKNLDSLLLNRNSLTG--PIPSTIGYLNLGG 214 (408)
Q Consensus 141 L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~-~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~ 214 (408)
|+++-+.+.++. ......+..+|.++.++++.|........ .. .-.+.+..++...|.... .....-..+|++.
T Consensus 123 l~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~ 202 (418)
T KOG2982|consen 123 LRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVN 202 (418)
T ss_pred eEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccch
Confidence 999999988754 23344566689999999999854321111 11 123456667666665431 1122234567888
Q ss_pred eEEccCCcCCCCC-CcccCCCCCccEEEccCCccccc-CCccccCCCCCCEEeCCCCcccccCCc------cccCCCCCc
Q 037302 215 KLDLSHNRLDSPI-PPTIGNLTNLTSLDLSSNQLSGL-LPREVGNLKYLDSLSLDGNNLIGSIPP------TIGYLTNLT 286 (408)
Q Consensus 215 ~l~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~------~~~~~~~L~ 286 (408)
.+.+..+++.... ......++.+..|.++.+++.+. ....+.++++|..|++.++.+.+.... .++.+++++
T Consensus 203 sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~ 282 (418)
T KOG2982|consen 203 SVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQ 282 (418)
T ss_pred heeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceE
Confidence 8888777664432 23455667777888888887643 235677889999999999887644322 234566666
Q ss_pred EEe
Q 037302 287 SLN 289 (408)
Q Consensus 287 ~L~ 289 (408)
.|+
T Consensus 283 vLN 285 (418)
T KOG2982|consen 283 VLN 285 (418)
T ss_pred Eec
Confidence 664
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.29 E-value=8e-08 Score=79.84 Aligned_cols=39 Identities=26% Similarity=0.284 Sum_probs=17.3
Q ss_pred CCCCCcEEeCCCCccccCCC----cCCcCCCCCcEEEcCCCcc
Q 037302 281 YLTNLTSLNLGYNQLSSSIP----PELMNCSQLQNLVLSHNTL 319 (408)
Q Consensus 281 ~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~ 319 (408)
.+++|+.|++.+|-++-... ..+..++.|++|.+..|-+
T Consensus 212 y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCll 254 (388)
T COG5238 212 YSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLL 254 (388)
T ss_pred HhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhh
Confidence 44555555555554442111 1223344455555555543
No 52
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.18 E-value=5e-06 Score=64.00 Aligned_cols=122 Identities=18% Similarity=0.269 Sum_probs=40.4
Q ss_pred ccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCC
Q 037302 230 TIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQL 309 (408)
Q Consensus 230 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 309 (408)
.|..+.+|+.+.+.. .+.......|..+++|+.+.+.+. +......++..+++++.+.+.+ .+.......|..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 344444555555543 223333344445555555555442 3223333444444555555543 2222333344445555
Q ss_pred cEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCc
Q 037302 310 QNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNI 357 (408)
Q Consensus 310 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 357 (408)
+.+.+..+ +..+....|.++ .++.+.+.+ .+......+|.+|++|
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 55555432 322333444444 555555444 2222333444444444
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.05 E-value=9.3e-08 Score=89.86 Aligned_cols=122 Identities=27% Similarity=0.305 Sum_probs=72.8
Q ss_pred CCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCC
Q 037302 261 LDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSH 340 (408)
Q Consensus 261 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 340 (408)
|...+.+.|.+. ..-..+.-++.|+.|++++|+++... .+..|+.|++|+|++|.+..+..-....|. |..|.+++
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecc
Confidence 444444444443 22234455567777777777776432 566677777777777766533332333443 77777777
Q ss_pred ccccccCCcCCCCCCCccEEeCCCCccCCcC---C-ccccCCCeEEccCCcc
Q 037302 341 NFINGTIPSQLGYIPNISAVDLSKNNLSGVV---P-ASVRIIPKLIVSENNL 388 (408)
Q Consensus 341 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~---~-~~~~~l~~l~l~~n~~ 388 (408)
|.++.. ..++++++|+-|++++|-+.+.. | +.++.++.|.|.+|++
T Consensus 242 N~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 242 NALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 776633 23556677777777777665442 2 4455566777777776
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.95 E-value=5.6e-06 Score=49.64 Aligned_cols=39 Identities=38% Similarity=0.724 Sum_probs=23.5
Q ss_pred CCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCc
Q 037302 331 THLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGV 370 (408)
Q Consensus 331 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 370 (408)
++|++|++++|++++ +|..++++++|+.|++++|+++.+
T Consensus 1 ~~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp TT-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCSBE
T ss_pred CcceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCCCC
Confidence 356677777777763 344466677777777777766643
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.93 E-value=1.9e-05 Score=63.17 Aligned_cols=103 Identities=21% Similarity=0.275 Sum_probs=50.3
Q ss_pred CCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcC-CcccccCCCccEEEc
Q 037302 260 YLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIV-PPEIGNLTHLRQLDL 338 (408)
Q Consensus 260 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l 338 (408)
+...++++++.+... ..+.++++|.+|.+.+|.|+.+.+..-..+|+|+.|.+.+|.+.+.. ...+..||.|++|.+
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 444455555544321 23445555556666655555444433334455666666555543221 133445556666666
Q ss_pred CCccccccCC---cCCCCCCCccEEeCCC
Q 037302 339 SHNFINGTIP---SQLGYIPNISAVDLSK 364 (408)
Q Consensus 339 ~~~~~~~~~~---~~~~~~~~L~~L~l~~ 364 (408)
-+|++++.-- ..+..+|+|+.|++.+
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhh
Confidence 6665553211 1234455566555443
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.92 E-value=1.7e-06 Score=84.57 Aligned_cols=81 Identities=23% Similarity=0.310 Sum_probs=37.3
Q ss_pred CCCCcEEeCCCceecc-cCcccccCCCCCceeecCCccccccCCCcCCCCCCCCEEEcCCCeecc-cCcccccCCCCCce
Q 037302 66 LRNLVELDLSNNILNG-SIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSG-RLPQEVGNLKNLLS 143 (408)
Q Consensus 66 ~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~ 143 (408)
+|.|+.|.+.+-.+.. .+.....++|+|..|++++++++.. .+++.+++|++|.+.+-.+.. .....+..+.+|+.
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 4555555555544331 2222334455555555555555433 344455555555554443331 11223344555555
Q ss_pred EeccC
Q 037302 144 LFLDN 148 (408)
Q Consensus 144 L~l~~ 148 (408)
||++.
T Consensus 225 LDIS~ 229 (699)
T KOG3665|consen 225 LDISR 229 (699)
T ss_pred eeccc
Confidence 55553
No 57
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.87 E-value=5e-06 Score=69.43 Aligned_cols=42 Identities=21% Similarity=0.320 Sum_probs=23.5
Q ss_pred ccCCCCCCcEEEcCCCccccccch----hhccCCCCcEEeCCCCcC
Q 037302 14 NFTCFPNLESIIIPYTLLSGRIPS----EIGALSKLEELALPYNSL 55 (408)
Q Consensus 14 ~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~ 55 (408)
++-+||+|+.++|+++.+....|. .+++-+.|.+|.+.+|..
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence 445566666666666655544332 245555666666666544
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.86 E-value=3.1e-05 Score=61.90 Aligned_cols=102 Identities=22% Similarity=0.238 Sum_probs=79.8
Q ss_pred CCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccC-CcCCCCCCCccEE
Q 037302 282 LTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTI-PSQLGYIPNISAV 360 (408)
Q Consensus 282 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L 360 (408)
......+++++|.+... ..|..+++|.+|.+++|+++.+.+..-.-+++|+.|.+.+|.+.... ...++.||+|++|
T Consensus 41 ~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 34678899999988733 46888999999999999999877766667789999999999888642 3567899999999
Q ss_pred eCCCCccCCcC------CccccCCCeEEccC
Q 037302 361 DLSKNNLSGVV------PASVRIIPKLIVSE 385 (408)
Q Consensus 361 ~l~~~~l~~~~------~~~~~~l~~l~l~~ 385 (408)
.+-+|++..-. -..++++++||-+.
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhh
Confidence 99999997541 23355566666543
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.82 E-value=0.00014 Score=65.86 Aligned_cols=138 Identities=18% Similarity=0.210 Sum_probs=83.8
Q ss_pred cccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCc
Q 037302 207 IGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLT 286 (408)
Q Consensus 207 ~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 286 (408)
+..++.++.|++++|.+... | .-.++|++|.+++|.--...+..+ .++|+.|.+.+|..... -.++|+
T Consensus 48 ~~~~~~l~~L~Is~c~L~sL-P---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~s------LP~sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESL-P---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISG------LPESVR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCccc-C---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccc------cccccc
Confidence 44568888999998876643 3 123579999998874433444433 35889999988843222 235688
Q ss_pred EEeCCCCccccCCCcCCcCC-CCCcEEEcCCCc-cCC-cCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCC
Q 037302 287 SLNLGYNQLSSSIPPELMNC-SQLQNLVLSHNT-LSG-IVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLS 363 (408)
Q Consensus 287 ~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~-~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 363 (408)
.|++.++.... +..+ ++|+.|.+.+++ ... ..+..+ .++|++|++++|... ..|..+. .+|+.|.++
T Consensus 116 ~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls 185 (426)
T PRK15386 116 SLEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLH 185 (426)
T ss_pred eEEeCCCCCcc-----cccCcchHhheecccccccccccccccc--CCcccEEEecCCCcc-cCccccc--ccCcEEEec
Confidence 88887654431 2222 467888875543 110 111111 257999999998866 3443332 588888887
Q ss_pred CCc
Q 037302 364 KNN 366 (408)
Q Consensus 364 ~~~ 366 (408)
.+.
T Consensus 186 ~n~ 188 (426)
T PRK15386 186 IEQ 188 (426)
T ss_pred ccc
Confidence 763
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.77 E-value=0.00026 Score=64.28 Aligned_cols=158 Identities=17% Similarity=0.211 Sum_probs=97.3
Q ss_pred ccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCC-cccccCCccccCCCCC
Q 037302 183 VGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSN-QLSGLLPREVGNLKYL 261 (408)
Q Consensus 183 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L 261 (408)
+..+++++.|++++|.+... + ..++.|+.|.+++|......+..+ .++|++|.+++| .+. .. .++|
T Consensus 48 ~~~~~~l~~L~Is~c~L~sL-P---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sL------P~sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESL-P---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GL------PESV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCccc-C---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cc------cccc
Confidence 44578999999999977633 3 345679999998865433444444 368999999998 433 22 2468
Q ss_pred CEEeCCCCcccccCCccccCCCCCcEEeCCCCcccc--CCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcC
Q 037302 262 DSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSS--SIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLS 339 (408)
Q Consensus 262 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 339 (408)
+.|.+.++.... . -.-+++|+.|.+.++.... ..+..+ .++|++|.+++|... ..+..+. .+|+.|.++
T Consensus 115 e~L~L~~n~~~~-L---~~LPssLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls 185 (426)
T PRK15386 115 RSLEIKGSATDS-I---KNVPNGLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLH 185 (426)
T ss_pred ceEEeCCCCCcc-c---ccCcchHhheecccccccccccccccc--CCcccEEEecCCCcc-cCccccc--ccCcEEEec
Confidence 888887554331 1 1123578888885433110 111112 268999999999865 3343343 589999998
Q ss_pred Cccccc--cCCcCCCCCCCccEEeCCCC
Q 037302 340 HNFING--TIPSQLGYIPNISAVDLSKN 365 (408)
Q Consensus 340 ~~~~~~--~~~~~~~~~~~L~~L~l~~~ 365 (408)
.+.... .....+. +++ .|.+.+|
T Consensus 186 ~n~~~sLeI~~~sLP--~nl-~L~f~n~ 210 (426)
T PRK15386 186 IEQKTTWNISFEGFP--DGL-DIDLQNS 210 (426)
T ss_pred ccccccccCcccccc--ccc-Eechhhh
Confidence 874331 1111221 445 6777766
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.66 E-value=1.7e-05 Score=77.71 Aligned_cols=157 Identities=25% Similarity=0.197 Sum_probs=98.8
Q ss_pred ccccCeEEccCCcCCCCC-C-cccCCCCCccEEEccCCccccc-CCccccCCCCCCEEeCCCCcccccCCccccCCCCCc
Q 037302 210 LNLGGKLDLSHNRLDSPI-P-PTIGNLTNLTSLDLSSNQLSGL-LPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLT 286 (408)
Q Consensus 210 ~~~L~~l~l~~~~~~~~~-~-~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 286 (408)
-.+|++|++++...-... + ..-..+|+|++|.+.+-.+... ......++|+|..|+++++++... .+++++++|+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq 198 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQ 198 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHH
Confidence 356778888774332111 1 1112468888888888655422 334456778888888888887644 6677888888
Q ss_pred EEeCCCCcccc-CCCcCCcCCCCCcEEEcCCCccCCcC------CcccccCCCccEEEcCCccccccCCcC-CCCCCCcc
Q 037302 287 SLNLGYNQLSS-SIPPELMNCSQLQNLVLSHNTLSGIV------PPEIGNLTHLRQLDLSHNFINGTIPSQ-LGYIPNIS 358 (408)
Q Consensus 287 ~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~------~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~ 358 (408)
.|.+.+-.+.. .....+-++.+|+.|++|..+..... .+.-..+|+|+.||.++..+.+..-+. +...|+|+
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~ 278 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQ 278 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHh
Confidence 88887766663 11223556788888888887543211 122234788888888888777554333 34567777
Q ss_pred EEeCCCCccC
Q 037302 359 AVDLSKNNLS 368 (408)
Q Consensus 359 ~L~l~~~~l~ 368 (408)
.+..-+|...
T Consensus 279 ~i~~~~~~~~ 288 (699)
T KOG3665|consen 279 QIAALDCLAL 288 (699)
T ss_pred hhhhhhhhcc
Confidence 7776665443
No 62
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.65 E-value=1.4e-06 Score=64.87 Aligned_cols=86 Identities=29% Similarity=0.286 Sum_probs=54.3
Q ss_pred CCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEE
Q 037302 258 LKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLD 337 (408)
Q Consensus 258 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 337 (408)
...|+..++++|.+.+........++.++.+++++|.+. ..|..+..++.|+.|++++|++. ..+..+..+.++-.|+
T Consensus 52 ~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD 129 (177)
T ss_pred CceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence 345566667776666555455555666777777777776 34444666777777777777765 4455555566677777
Q ss_pred cCCccccc
Q 037302 338 LSHNFING 345 (408)
Q Consensus 338 l~~~~~~~ 345 (408)
..+|....
T Consensus 130 s~~na~~e 137 (177)
T KOG4579|consen 130 SPENARAE 137 (177)
T ss_pred CCCCcccc
Confidence 77766653
No 63
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.57 E-value=0.00011 Score=44.10 Aligned_cols=37 Identities=30% Similarity=0.540 Sum_probs=20.3
Q ss_pred CCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCC
Q 037302 19 PNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLT 56 (408)
Q Consensus 19 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 56 (408)
++|++|+++++.+. .++..++.+++|+.|++++|.++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 35666666666665 33444566666666666666554
No 64
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.50 E-value=3.7e-06 Score=80.62 Aligned_cols=129 Identities=22% Similarity=0.133 Sum_probs=61.4
Q ss_pred CCCCCEEEcCCCcCCCC--CCccccCCCCCCEEEecCc-cc-cc---ccCcccccccccCeEEccCCc-CCCCCCcccC-
Q 037302 162 LNQLSNLYLAYNNLVGP--LPKEVGNMKNLDSLLLNRN-SL-TG---PIPSTIGYLNLGGKLDLSHNR-LDSPIPPTIG- 232 (408)
Q Consensus 162 ~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~-~~-~~---~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~l~- 232 (408)
++.|+.+.+.++..... .......++.|+.|+++++ .. .. ........++.++.++++.+. +++.....++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 56666666665533222 2233455666666666552 11 10 011233445666666666655 3333222222
Q ss_pred CCCCccEEEccCCc-ccccCCccc-cCCCCCCEEeCCCCccccc--CCccccCCCCCcEEeC
Q 037302 233 NLTNLTSLDLSSNQ-LSGLLPREV-GNLKYLDSLSLDGNNLIGS--IPPTIGYLTNLTSLNL 290 (408)
Q Consensus 233 ~~~~L~~L~l~~~~-~~~~~~~~~-~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l 290 (408)
.|++|+.|.+.+|. +++.....+ ..++.|++|++++|..... .......+++|+.+.+
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 26667777666664 343332222 3456677777766654311 2222334555555443
No 65
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.48 E-value=4.3e-06 Score=62.43 Aligned_cols=139 Identities=19% Similarity=0.216 Sum_probs=84.6
Q ss_pred CCEEeCCCCccccc--CCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEc
Q 037302 261 LDSLSLDGNNLIGS--IPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDL 338 (408)
Q Consensus 261 L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 338 (408)
+..++++.|.+.-. ....+..-..|+..++++|.+....+..-...+.++.+++.+|.+.+ .++.+..++.|+.+++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisd-vPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISD-VPEELAAMPALRSLNL 107 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhh-chHHHhhhHHhhhccc
Confidence 44455556654311 12223344566677777777774333333345677777777777763 3455777777777777
Q ss_pred CCccccccCCcCCCCCCCccEEeCCCCccCCcCCcccc--CCCeEEccCCccCCCCCCCcCCCCC
Q 037302 339 SHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVR--IIPKLIVSENNLELENSTSSENAPP 401 (408)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~--~l~~l~l~~n~~~~~~~~~~~~~~~ 401 (408)
+.|++. ..|..+..+.++-.|+.-+|.+.-+.-..+. ....+++.++++.+.=+..+|-+.+
T Consensus 108 ~~N~l~-~~p~vi~~L~~l~~Lds~~na~~eid~dl~~s~~~al~~lgnepl~~~~~~klqa~kp 171 (177)
T KOG4579|consen 108 RFNPLN-AEPRVIAPLIKLDMLDSPENARAEIDVDLFYSSLPALIKLGNEPLGDETKKKLQALKP 171 (177)
T ss_pred ccCccc-cchHHHHHHHhHHHhcCCCCccccCcHHHhccccHHHHHhcCCcccccCcccccccCC
Confidence 777777 5566666667777777777766544333222 2226677777787777777776663
No 66
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.40 E-value=9.2e-06 Score=77.88 Aligned_cols=132 Identities=22% Similarity=0.091 Sum_probs=73.5
Q ss_pred CCCCCceEeccCCc-ccCc-CchhhccCCCCCEEEcCCC-cCCCC----CCccccCCCCCCEEEecCcc-cccccCccc-
Q 037302 137 NLKNLLSLFLDNNN-LTGP-IPSTLYHLNQLSNLYLAYN-NLVGP----LPKEVGNMKNLDSLLLNRNS-LTGPIPSTI- 207 (408)
Q Consensus 137 ~l~~L~~L~l~~~~-~~~~-~~~~~~~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~- 207 (408)
..+.|+.+.+.++. +... .......++.|+.++++++ ..... .......+++|+.+++..+. +++.....+
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 36777777777663 2211 2234455788888888763 21111 11233456778888888776 443332232
Q ss_pred ccccccCeEEccCCc-CCCCC-CcccCCCCCccEEEccCCccc-cc-CCccccCCCCCCEEeCCC
Q 037302 208 GYLNLGGKLDLSHNR-LDSPI-PPTIGNLTNLTSLDLSSNQLS-GL-LPREVGNLKYLDSLSLDG 268 (408)
Q Consensus 208 ~~~~~L~~l~l~~~~-~~~~~-~~~l~~~~~L~~L~l~~~~~~-~~-~~~~~~~~~~L~~L~l~~ 268 (408)
..++.|+.+.+.+|. +++.. ......++.|++|++++|... +. .......+++++.|.+..
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS 330 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence 337788888876665 33322 223345778888888887543 11 122233466666655443
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.13 E-value=0.00013 Score=60.95 Aligned_cols=57 Identities=30% Similarity=0.199 Sum_probs=23.6
Q ss_pred CCCCCEEEcCCCeeccc-CcccccCCCCCceEeccCCcccCcCc---hhhccCCCCCEEEc
Q 037302 114 LTNLTHLDLSLNQLSGR-LPQEVGNLKNLLSLFLDNNNLTGPIP---STLYHLNQLSNLYL 170 (408)
Q Consensus 114 l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l 170 (408)
+++|+++++++|+++.. -...++.+++|..|++..|..+.... ..|.-+++|++++-
T Consensus 90 ~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 90 APNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred CCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 35555555555544310 00112334445555555544332111 12333566666554
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.00 E-value=0.00029 Score=58.90 Aligned_cols=63 Identities=27% Similarity=0.303 Sum_probs=26.4
Q ss_pred CCCCCCEEeCCCC--cccccCCccccCCCCCcEEeCCCCcccc-CCCcCCcCCCCCcEEEcCCCcc
Q 037302 257 NLKYLDSLSLDGN--NLIGSIPPTIGYLTNLTSLNLGYNQLSS-SIPPELMNCSQLQNLVLSHNTL 319 (408)
Q Consensus 257 ~~~~L~~L~l~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~ 319 (408)
.+++|+.|.++.+ ............+|+|+++++++|.+.. .....+..+++|..|++.+|..
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSV 128 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCc
Confidence 3445555555555 2222233333344555555555554441 0111122334444445555443
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.89 E-value=2e-05 Score=66.20 Aligned_cols=99 Identities=27% Similarity=0.346 Sum_probs=59.1
Q ss_pred CCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCC-cccccCCCccEEE
Q 037302 259 KYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVP-PEIGNLTHLRQLD 337 (408)
Q Consensus 259 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~ 337 (408)
.+.+.|+..||.+.++ .....++.|++|.|+-|.|+.. ..+..|++|++|.|..|.|.++.. +.+.++|+|+.|+
T Consensus 19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 4455666677766543 3345667777777777777633 346667777777777776653321 2345677777777
Q ss_pred cCCccccccCCc-----CCCCCCCccEEe
Q 037302 338 LSHNFINGTIPS-----QLGYIPNISAVD 361 (408)
Q Consensus 338 l~~~~~~~~~~~-----~~~~~~~L~~L~ 361 (408)
|..|+-.+..+. .++.+|+|+.|+
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 777766544332 233456666553
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.65 E-value=5.5e-05 Score=63.62 Aligned_cols=80 Identities=25% Similarity=0.194 Sum_probs=48.3
Q ss_pred CCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCceeecCCccccccC-CCcCCCCCCCCEE
Q 037302 42 LSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLI-PSSIGNLTNLTHL 120 (408)
Q Consensus 42 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~-~~~l~~l~~L~~L 120 (408)
+.+.+.|+.-||.++++ ....+++.|++|.|+-|+|... ..+..|.+|++|+|+.|.|.++. ...+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 34556666666666544 3445677777777777766532 23566777777777777665331 1235566666666
Q ss_pred EcCCC
Q 037302 121 DLSLN 125 (408)
Q Consensus 121 ~l~~~ 125 (408)
.+..|
T Consensus 94 WL~EN 98 (388)
T KOG2123|consen 94 WLDEN 98 (388)
T ss_pred hhccC
Confidence 66554
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.24 E-value=0.002 Score=32.02 Aligned_cols=21 Identities=33% Similarity=0.265 Sum_probs=12.4
Q ss_pred CCeEEccCCccCCCCCCCcCCC
Q 037302 378 IPKLIVSENNLELENSTSSENA 399 (408)
Q Consensus 378 l~~l~l~~n~~~~~~~~~~~~~ 399 (408)
|++|++++|+++ .+|..|++|
T Consensus 2 L~~Ldls~n~l~-~ip~~~~~l 22 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFSNL 22 (22)
T ss_dssp ESEEEETSSEES-EEGTTTTT-
T ss_pred ccEEECCCCcCE-eCChhhcCC
Confidence 456666666665 666665543
No 72
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.97 E-value=0.00037 Score=56.00 Aligned_cols=81 Identities=16% Similarity=0.146 Sum_probs=42.8
Q ss_pred CcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCc-cCCcCCccc-ccCCCccEEEcCCc-cccccCCcCCCCCCCccEEe
Q 037302 285 LTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNT-LSGIVPPEI-GNLTHLRQLDLSHN-FINGTIPSQLGYIPNISAVD 361 (408)
Q Consensus 285 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~-~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~ 361 (408)
++.++-+++.|.......+.++++++.|.+.+|+ +.+.-.+.+ ...++|+.|+|++| +||+...+.+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 4555556665555555555556666666666664 111100111 12356666666666 55555555555666666666
Q ss_pred CCCC
Q 037302 362 LSKN 365 (408)
Q Consensus 362 l~~~ 365 (408)
+++=
T Consensus 183 l~~l 186 (221)
T KOG3864|consen 183 LYDL 186 (221)
T ss_pred hcCc
Confidence 5554
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.50 E-value=0.0026 Score=51.27 Aligned_cols=81 Identities=19% Similarity=0.220 Sum_probs=40.1
Q ss_pred CccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccC-Cccc-cCCCCCcEEeCCCCc-cccCCCcCCcCCCCCcEE
Q 037302 236 NLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSI-PPTI-GYLTNLTSLNLGYNQ-LSSSIPPELMNCSQLQNL 312 (408)
Q Consensus 236 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~-~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L 312 (408)
.++.++-+++.+......-+..++.++.|.+.+|...+.. ...+ .-.++|+.|++++|. |++.....+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 4666666766666555555666666777777666543221 1111 122445555555443 343333334444444444
Q ss_pred EcCC
Q 037302 313 VLSH 316 (408)
Q Consensus 313 ~l~~ 316 (408)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 4433
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.47 E-value=0.017 Score=28.59 Aligned_cols=12 Identities=50% Similarity=0.562 Sum_probs=6.4
Q ss_pred ccEEEcCCcccc
Q 037302 333 LRQLDLSHNFIN 344 (408)
Q Consensus 333 L~~L~l~~~~~~ 344 (408)
|++|++++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 455555555555
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.82 E-value=0.12 Score=23.65 Aligned_cols=11 Identities=64% Similarity=0.854 Sum_probs=3.4
Q ss_pred ccEEEcCCccc
Q 037302 333 LRQLDLSHNFI 343 (408)
Q Consensus 333 L~~L~l~~~~~ 343 (408)
|+.|++++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 34444444443
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.76 E-value=0.21 Score=25.71 Aligned_cols=21 Identities=43% Similarity=0.760 Sum_probs=11.7
Q ss_pred CCccEEeCCCCccCCcCCccc
Q 037302 355 PNISAVDLSKNNLSGVVPASV 375 (408)
Q Consensus 355 ~~L~~L~l~~~~l~~~~~~~~ 375 (408)
++|+.|++++|++..+.+..|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 455666666666655544444
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.76 E-value=0.21 Score=25.71 Aligned_cols=21 Identities=43% Similarity=0.760 Sum_probs=11.7
Q ss_pred CCccEEeCCCCccCCcCCccc
Q 037302 355 PNISAVDLSKNNLSGVVPASV 375 (408)
Q Consensus 355 ~~L~~L~l~~~~l~~~~~~~~ 375 (408)
++|+.|++++|++..+.+..|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 455666666666655544444
No 78
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=85.36 E-value=0.0017 Score=61.20 Aligned_cols=83 Identities=30% Similarity=0.257 Sum_probs=39.5
Q ss_pred CCEEEcCCCcCCCC----CCccccCCCCCCEEEecCccccccc----Ccccccc-cccCeEEccCCcCCCCC----Cccc
Q 037302 165 LSNLYLAYNNLVGP----LPKEVGNMKNLDSLLLNRNSLTGPI----PSTIGYL-NLGGKLDLSHNRLDSPI----PPTI 231 (408)
Q Consensus 165 L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~-~~L~~l~l~~~~~~~~~----~~~l 231 (408)
+..+.+.+|.+... +...+...+.|..|+++.|.+.+.. ...+... ..++.|.+..|.+.... ...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 55566666665432 2233455667777777776665321 1112222 33444555444443321 1223
Q ss_pred CCCCCccEEEccCCcc
Q 037302 232 GNLTNLTSLDLSSNQL 247 (408)
Q Consensus 232 ~~~~~L~~L~l~~~~~ 247 (408)
.....++.++++.|.+
T Consensus 169 ~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGL 184 (478)
T ss_pred hcccchhHHHHHhccc
Confidence 3345556666655544
No 79
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=85.18 E-value=0.3 Score=24.57 Aligned_cols=15 Identities=27% Similarity=0.547 Sum_probs=7.4
Q ss_pred CCCcEEEcCCCcccc
Q 037302 19 PNLESIIIPYTLLSG 33 (408)
Q Consensus 19 ~~L~~L~l~~~~~~~ 33 (408)
++|++|++++|.+.+
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 556666666665543
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=82.65 E-value=0.021 Score=47.26 Aligned_cols=90 Identities=13% Similarity=0.171 Sum_probs=40.7
Q ss_pred ccccccCCCCCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccC
Q 037302 10 LSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGN 89 (408)
Q Consensus 10 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 89 (408)
|+.-.+..+...++||++.+.... +-..|+.++.+..|+++.+.+. ..+.++.....++.+++..|... ..|..+..
T Consensus 33 ~~v~ei~~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k 109 (326)
T KOG0473|consen 33 IPVREIASFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKK 109 (326)
T ss_pred cchhhhhccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccc
Confidence 333334444444555554443321 1112333344444455544443 44444444444555555444443 44555555
Q ss_pred CCCCceeecCCcc
Q 037302 90 LKDLDALRLRGNK 102 (408)
Q Consensus 90 l~~L~~L~l~~~~ 102 (408)
.+++++++..++.
T Consensus 110 ~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 110 EPHPKKNEQKKTE 122 (326)
T ss_pred cCCcchhhhccCc
Confidence 5555555555544
No 81
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=77.91 E-value=0.0097 Score=56.20 Aligned_cols=181 Identities=28% Similarity=0.274 Sum_probs=94.7
Q ss_pred CCEEEecCcccccc----cCcccccccccCeEEccCCcCCCCCC----cccCCC-CCccEEEccCCcccccC----Cccc
Q 037302 189 LDSLLLNRNSLTGP----IPSTIGYLNLGGKLDLSHNRLDSPIP----PTIGNL-TNLTSLDLSSNQLSGLL----PREV 255 (408)
Q Consensus 189 L~~L~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~~----~~l~~~-~~L~~L~l~~~~~~~~~----~~~~ 255 (408)
+..+.+.+|.+.+. ....+...+.|+.++++++.+..... ..+... +.++.|.+..|.++... ...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 55666666665432 23445666777778887776653211 122222 45666667666665332 2333
Q ss_pred cCCCCCCEEeCCCCccccc----CCcccc----CCCCCcEEeCCCCccccCC----CcCCcCCCC-CcEEEcCCCccCCc
Q 037302 256 GNLKYLDSLSLDGNNLIGS----IPPTIG----YLTNLTSLNLGYNQLSSSI----PPELMNCSQ-LQNLVLSHNTLSGI 322 (408)
Q Consensus 256 ~~~~~L~~L~l~~~~~~~~----~~~~~~----~~~~L~~L~l~~~~~~~~~----~~~~~~~~~-L~~L~l~~~~~~~~ 322 (408)
.....+++++++.|.+... ....+. ...++++|.+++|.++... ...+...+. +..+++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 3456677777776665311 112222 2456667777766655211 112333334 55566666665433
Q ss_pred C----CcccccC-CCccEEEcCCccccccCC----cCCCCCCCccEEeCCCCccCC
Q 037302 323 V----PPEIGNL-THLRQLDLSHNFINGTIP----SQLGYIPNISAVDLSKNNLSG 369 (408)
Q Consensus 323 ~----~~~~~~~-~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~l~~ 369 (408)
. ...+..+ +.+++++++.|.+++... +.+..++.++.+.+..|++..
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 1 1222223 456677777777665433 234456667777777666653
No 82
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=69.42 E-value=4.2 Score=20.99 Aligned_cols=15 Identities=33% Similarity=0.612 Sum_probs=8.8
Q ss_pred CCccEEeCCCCccCC
Q 037302 355 PNISAVDLSKNNLSG 369 (408)
Q Consensus 355 ~~L~~L~l~~~~l~~ 369 (408)
.+|+.|++++|+|+.
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 456666666666643
No 83
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=66.10 E-value=4.5 Score=20.66 Aligned_cols=15 Identities=33% Similarity=0.612 Sum_probs=11.3
Q ss_pred CCCccEEeCCCCc-cC
Q 037302 354 IPNISAVDLSKNN-LS 368 (408)
Q Consensus 354 ~~~L~~L~l~~~~-l~ 368 (408)
|++|+.|++++|+ ++
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 5788888888885 44
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=64.64 E-value=5.1 Score=20.68 Aligned_cols=13 Identities=31% Similarity=0.618 Sum_probs=7.3
Q ss_pred CccEEEcCCcccc
Q 037302 332 HLRQLDLSHNFIN 344 (408)
Q Consensus 332 ~L~~L~l~~~~~~ 344 (408)
+|+.|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 4555555555555
No 85
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=64.19 E-value=0.19 Score=41.86 Aligned_cols=85 Identities=18% Similarity=0.213 Sum_probs=49.9
Q ss_pred cCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccE
Q 037302 280 GYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISA 359 (408)
Q Consensus 280 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 359 (408)
..+...+.|+++.+... .....|.-++++..|+++.+.+. ..++.+.....+..++...|... -.|-.+...++++.
T Consensus 39 ~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKK 115 (326)
T ss_pred hccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcch
Confidence 34455666666666555 22233444566666666666655 45556665566666666666555 44555666666666
Q ss_pred EeCCCCcc
Q 037302 360 VDLSKNNL 367 (408)
Q Consensus 360 L~l~~~~l 367 (408)
++..++++
T Consensus 116 ~e~k~~~~ 123 (326)
T KOG0473|consen 116 NEQKKTEF 123 (326)
T ss_pred hhhccCcc
Confidence 66666664
No 86
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=57.01 E-value=9.4 Score=19.94 Aligned_cols=14 Identities=43% Similarity=0.800 Sum_probs=7.8
Q ss_pred CCccEEeCCCCccC
Q 037302 355 PNISAVDLSKNNLS 368 (408)
Q Consensus 355 ~~L~~L~l~~~~l~ 368 (408)
++|+.|++++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 34555666666553
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=51.29 E-value=4.9 Score=38.20 Aligned_cols=36 Identities=28% Similarity=0.289 Sum_probs=18.8
Q ss_pred CCCCCEEeCCCCccccc--CCccccCCCCCcEEeCCCC
Q 037302 258 LKYLDSLSLDGNNLIGS--IPPTIGYLTNLTSLNLGYN 293 (408)
Q Consensus 258 ~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~ 293 (408)
.+.+..+.+++|.+.+. ........|+|+.|+|++|
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 45556666666655422 2222334466666666666
No 88
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=47.63 E-value=23 Score=29.48 Aligned_cols=23 Identities=13% Similarity=0.070 Sum_probs=10.4
Q ss_pred CeEEccCCccCCCCCCCcCCCCCCC
Q 037302 379 PKLIVSENNLELENSTSSENAPPPQ 403 (408)
Q Consensus 379 ~~l~l~~n~~~~~~~~~~~~~~~~~ 403 (408)
++-++.+..+.++.-+ ..++||+
T Consensus 274 QeAnLRg~Nlk~A~~e--~mltplh 296 (302)
T KOG1665|consen 274 QEANLRGVNLKEAHME--AMLTPLH 296 (302)
T ss_pred hHhhcccCchhhHHHH--hhccchh
Confidence 3444455555444333 4444443
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=34.86 E-value=24 Score=33.81 Aligned_cols=13 Identities=46% Similarity=0.488 Sum_probs=6.7
Q ss_pred CCCCCcEEeCCCc
Q 037302 65 SLRNLVELDLSNN 77 (408)
Q Consensus 65 ~~~~L~~L~l~~~ 77 (408)
..|+|+.|+|++|
T Consensus 242 ~apklk~L~LS~N 254 (585)
T KOG3763|consen 242 IAPKLKTLDLSHN 254 (585)
T ss_pred hcchhheeecccc
Confidence 3445555555554
No 90
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=31.96 E-value=69 Score=26.77 Aligned_cols=12 Identities=17% Similarity=0.241 Sum_probs=5.2
Q ss_pred CCcEEEcCCCcc
Q 037302 308 QLQNLVLSHNTL 319 (408)
Q Consensus 308 ~L~~L~l~~~~~ 319 (408)
+|+--++.++.+
T Consensus 217 NLeganLkG~~~ 228 (302)
T KOG1665|consen 217 NLEGANLKGADM 228 (302)
T ss_pred cccccccccccc
Confidence 344444444443
Done!