Query 037302
Match_columns 408
No_of_seqs 198 out of 3093
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 18:33:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037302.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037302hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2.3E-45 8E-50 367.3 30.9 303 15-319 219-550 (768)
2 3rgz_A Protein brassinosteroid 100.0 7.1E-45 2.4E-49 363.8 33.5 333 13-348 194-555 (768)
3 3t6q_A CD180 antigen; protein- 100.0 2.5E-43 8.6E-48 344.9 37.3 398 4-402 42-526 (606)
4 3t6q_A CD180 antigen; protein- 100.0 3E-43 1E-47 344.4 31.3 401 4-405 66-552 (606)
5 3vq2_A TLR4, TOLL-like recepto 100.0 1.7E-41 5.7E-46 332.0 31.1 394 4-404 41-549 (606)
6 2z63_A TOLL-like receptor 4, v 100.0 1.8E-41 6.1E-46 329.6 30.4 394 4-405 37-523 (570)
7 1ziw_A TOLL-like receptor 3; i 100.0 1.6E-40 5.6E-45 329.2 36.0 387 4-390 34-518 (680)
8 3vq2_A TLR4, TOLL-like recepto 100.0 5.2E-41 1.8E-45 328.5 28.4 386 4-393 65-562 (606)
9 1ziw_A TOLL-like receptor 3; i 100.0 1.1E-39 3.8E-44 323.2 36.9 177 228-404 398-588 (680)
10 3j0a_A TOLL-like receptor 5; m 100.0 1.8E-40 6.1E-45 335.3 28.7 398 4-401 33-551 (844)
11 2z63_A TOLL-like receptor 4, v 100.0 4.2E-40 1.4E-44 319.9 29.7 383 4-394 61-536 (570)
12 4eco_A Uncharacterized protein 100.0 1.4E-40 4.8E-45 325.6 25.0 371 19-397 81-586 (636)
13 4eco_A Uncharacterized protein 100.0 5.4E-40 1.8E-44 321.4 27.6 350 35-390 198-601 (636)
14 3j0a_A TOLL-like receptor 5; m 100.0 4.1E-39 1.4E-43 325.3 26.9 385 5-391 59-562 (844)
15 2z81_A CD282 antigen, TOLL-lik 100.0 5.4E-39 1.9E-43 310.6 26.1 391 6-405 37-502 (549)
16 4ecn_A Leucine-rich repeat pro 100.0 6.6E-39 2.3E-43 319.1 26.2 331 59-397 440-826 (876)
17 3v47_A TOLL-like receptor 5B a 100.0 2.6E-38 8.8E-43 298.8 28.7 354 19-372 30-412 (455)
18 3v47_A TOLL-like receptor 5B a 100.0 3.7E-38 1.3E-42 297.7 28.7 370 21-394 12-413 (455)
19 4ecn_A Leucine-rich repeat pro 100.0 2.8E-38 9.4E-43 314.7 27.9 355 35-396 440-847 (876)
20 2z7x_B TOLL-like receptor 1, v 100.0 4.1E-37 1.4E-41 295.4 28.5 374 4-391 9-483 (520)
21 2z81_A CD282 antigen, TOLL-lik 100.0 5.7E-38 1.9E-42 303.5 19.2 392 4-405 14-478 (549)
22 1o6v_A Internalin A; bacterial 100.0 1E-35 3.4E-40 281.4 32.1 345 17-390 44-389 (466)
23 1o6v_A Internalin A; bacterial 100.0 2E-35 6.7E-40 279.4 31.5 335 5-370 56-390 (466)
24 2z7x_B TOLL-like receptor 1, v 100.0 5.8E-36 2E-40 287.4 27.7 371 22-405 3-473 (520)
25 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.5E-35 5.1E-40 286.9 29.1 373 5-392 41-513 (562)
26 2id5_A Lingo-1, leucine rich r 100.0 1.5E-35 5.2E-40 281.4 25.5 320 22-344 14-333 (477)
27 2id5_A Lingo-1, leucine rich r 100.0 3.4E-35 1.2E-39 279.0 25.3 301 20-320 33-333 (477)
28 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.9E-34 6.4E-39 279.2 30.0 376 16-405 28-502 (562)
29 4g8a_A TOLL-like receptor 4; l 100.0 5.1E-34 1.7E-38 280.7 32.2 384 20-405 53-572 (635)
30 3bz5_A Internalin-J, INLJ; leu 100.0 1.9E-33 6.4E-38 263.9 26.4 350 9-399 32-397 (457)
31 4fmz_A Internalin; leucine ric 100.0 6.3E-33 2.2E-37 252.4 28.0 305 40-367 41-345 (347)
32 3o6n_A APL1; leucine-rich repe 100.0 3.3E-33 1.1E-37 258.3 24.6 312 41-370 43-354 (390)
33 4fmz_A Internalin; leucine ric 100.0 8.7E-33 3E-37 251.5 26.8 308 61-389 38-346 (347)
34 3o6n_A APL1; leucine-rich repe 100.0 3.4E-33 1.1E-37 258.2 23.4 308 19-344 45-352 (390)
35 4g8a_A TOLL-like receptor 4; l 100.0 1.2E-31 4.2E-36 263.7 33.9 379 23-406 35-548 (635)
36 3oja_B Anopheles plasmodium-re 100.0 4.1E-32 1.4E-36 264.2 24.9 312 41-370 49-360 (597)
37 3oja_B Anopheles plasmodium-re 100.0 2.9E-31 9.8E-36 258.3 27.4 311 17-345 49-359 (597)
38 1jl5_A Outer protein YOPM; leu 100.0 7.8E-31 2.7E-35 245.9 28.0 353 4-399 20-421 (454)
39 3bz5_A Internalin-J, INLJ; leu 100.0 1.7E-30 5.8E-35 243.8 27.6 324 32-391 31-370 (457)
40 1xku_A Decorin; proteoglycan, 100.0 1.4E-29 4.7E-34 228.6 27.5 291 44-366 32-330 (330)
41 1xku_A Decorin; proteoglycan, 100.0 2.3E-29 7.8E-34 227.2 28.4 265 116-387 53-330 (330)
42 1z7x_W Ribonuclease inhibitor; 100.0 3.5E-34 1.2E-38 271.0 -4.9 376 19-394 3-445 (461)
43 2ft3_A Biglycan; proteoglycan, 100.0 3.4E-29 1.2E-33 226.2 25.0 288 44-342 34-331 (332)
44 2ft3_A Biglycan; proteoglycan, 100.0 3.8E-29 1.3E-33 225.8 25.0 287 68-365 34-330 (332)
45 1jl5_A Outer protein YOPM; leu 100.0 7.6E-28 2.6E-32 225.6 34.3 334 19-401 91-441 (454)
46 1z7x_W Ribonuclease inhibitor; 100.0 1.4E-32 4.6E-37 260.1 -6.1 366 6-371 14-443 (461)
47 1ogq_A PGIP-2, polygalacturona 100.0 1.1E-28 3.7E-33 220.6 15.8 248 141-390 52-306 (313)
48 1ogq_A PGIP-2, polygalacturona 100.0 2.1E-28 7.2E-33 218.7 17.5 252 115-369 50-306 (313)
49 2z66_A Variable lymphocyte rec 100.0 2.7E-27 9.4E-32 211.3 19.2 283 94-404 10-302 (306)
50 3ogk_B Coronatine-insensitive 99.9 1.7E-30 5.9E-35 253.4 -9.7 387 8-396 62-533 (592)
51 1ozn_A Reticulon 4 receptor; N 99.9 2.6E-26 9E-31 202.7 17.4 236 163-398 32-270 (285)
52 2z80_A TOLL-like receptor 2, v 99.9 9.3E-27 3.2E-31 212.0 14.9 280 66-372 30-318 (353)
53 2z66_A Variable lymphocyte rec 99.9 1.8E-26 6E-31 206.0 16.1 282 70-379 10-298 (306)
54 2z80_A TOLL-like receptor 2, v 99.9 2.1E-26 7.1E-31 209.7 16.1 254 68-321 53-315 (353)
55 3ogk_B Coronatine-insensitive 99.9 8.2E-30 2.8E-34 248.6 -9.0 369 34-404 64-517 (592)
56 3zyj_A Leucine-rich repeat-con 99.9 5.8E-25 2E-29 206.2 24.1 247 92-343 44-291 (440)
57 3zyi_A Leucine-rich repeat-con 99.9 5.7E-25 2E-29 206.9 23.4 246 92-342 55-301 (452)
58 1ozn_A Reticulon 4 receptor; N 99.9 8.9E-26 3E-30 199.3 16.3 256 94-377 14-270 (285)
59 3zyj_A Leucine-rich repeat-con 99.9 2.8E-24 9.4E-29 201.5 25.1 247 69-320 45-292 (440)
60 3zyi_A Leucine-rich repeat-con 99.9 2.6E-24 8.8E-29 202.5 24.6 246 46-319 57-302 (452)
61 4fcg_A Uncharacterized protein 99.9 1.6E-24 5.3E-29 194.8 19.8 234 115-368 81-314 (328)
62 2p1m_B Transport inhibitor res 99.9 1.8E-29 6.1E-34 246.4 -15.1 162 10-172 57-244 (594)
63 4fcg_A Uncharacterized protein 99.9 6.3E-24 2.2E-28 190.8 20.7 236 89-344 79-314 (328)
64 3o53_A Protein LRIM1, AGAP0063 99.9 6.2E-26 2.1E-30 203.2 4.8 257 69-363 12-270 (317)
65 3o53_A Protein LRIM1, AGAP0063 99.9 2E-25 6.9E-30 199.9 8.0 261 121-395 16-282 (317)
66 2p1m_B Transport inhibitor res 99.9 4.3E-28 1.5E-32 236.6 -10.7 377 13-395 99-525 (594)
67 3g06_A SSPH2 (leucine-rich rep 99.9 8.9E-23 3.1E-27 197.0 25.5 265 44-376 41-305 (622)
68 1wwl_A Monocyte differentiatio 99.9 8.9E-25 3E-29 195.3 8.7 203 161-369 93-310 (312)
69 3rfs_A Internalin B, repeat mo 99.9 3.1E-23 1.1E-27 181.5 17.5 190 207-402 59-248 (272)
70 3g06_A SSPH2 (leucine-rich rep 99.9 9.9E-22 3.4E-26 189.7 27.3 263 19-349 40-302 (622)
71 1wwl_A Monocyte differentiatio 99.9 1.4E-24 4.9E-29 193.9 6.7 248 135-391 39-311 (312)
72 3oja_A Leucine-rich immune mol 99.9 4.1E-23 1.4E-27 195.3 14.0 232 139-384 34-270 (487)
73 2z62_A TOLL-like receptor 4, v 99.9 3.4E-22 1.2E-26 175.4 18.9 207 164-371 29-240 (276)
74 2o6q_A Variable lymphocyte rec 99.9 1.9E-21 6.3E-26 170.0 23.3 183 188-370 38-220 (270)
75 2z62_A TOLL-like receptor 4, v 99.9 4.5E-22 1.5E-26 174.7 18.6 206 187-393 28-241 (276)
76 2o6q_A Variable lymphocyte rec 99.9 2.2E-21 7.7E-26 169.5 22.0 200 19-221 16-215 (270)
77 3oja_A Leucine-rich immune mol 99.9 2E-23 6.8E-28 197.5 8.6 237 89-363 32-270 (487)
78 3rfs_A Internalin B, repeat mo 99.9 8.3E-22 2.8E-26 172.4 16.4 209 160-379 38-246 (272)
79 2ast_B S-phase kinase-associat 99.9 3E-23 1E-27 187.7 5.7 234 163-398 70-315 (336)
80 2xwt_C Thyrotropin receptor; s 99.9 1.6E-21 5.5E-26 167.3 14.8 197 188-387 32-237 (239)
81 1p9a_G Platelet glycoprotein I 99.9 1.2E-20 4.2E-25 166.2 20.7 205 158-369 5-209 (290)
82 1p9a_G Platelet glycoprotein I 99.9 2.2E-20 7.5E-25 164.6 21.1 204 134-344 5-208 (290)
83 3goz_A Leucine-rich repeat-con 99.9 7.4E-23 2.5E-27 186.7 3.5 255 96-370 3-299 (362)
84 2ast_B S-phase kinase-associat 99.8 3.3E-22 1.1E-26 180.8 4.0 102 68-173 48-152 (336)
85 3m19_A Variable lymphocyte rec 99.8 1.7E-19 5.7E-24 155.8 20.5 179 189-370 16-194 (251)
86 4fs7_A Uncharacterized protein 99.8 3.4E-19 1.2E-23 164.3 23.6 336 6-360 58-393 (394)
87 1h6u_A Internalin H; cell adhe 99.8 2.5E-20 8.6E-25 165.9 15.4 193 136-344 38-230 (308)
88 3m19_A Variable lymphocyte rec 99.8 2.3E-19 8E-24 154.9 21.0 178 211-391 14-194 (251)
89 3goz_A Leucine-rich repeat-con 99.8 9.2E-22 3.1E-26 179.5 5.8 256 71-346 2-299 (362)
90 4glp_A Monocyte differentiatio 99.8 2.7E-20 9.2E-25 166.1 14.4 201 162-367 90-306 (310)
91 2ca6_A RAN GTPase-activating p 99.8 1E-22 3.6E-27 187.6 -2.5 258 93-371 11-319 (386)
92 2o6s_A Variable lymphocyte rec 99.8 1.3E-19 4.3E-24 151.9 16.4 180 215-401 11-190 (208)
93 4glp_A Monocyte differentiatio 99.8 3.1E-20 1.1E-24 165.7 13.4 226 163-391 64-309 (310)
94 2ca6_A RAN GTPase-activating p 99.8 1.8E-22 6.3E-27 185.9 -1.3 186 208-393 91-320 (386)
95 2xwt_C Thyrotropin receptor; s 99.8 5.8E-20 2E-24 157.5 14.1 197 140-365 32-236 (239)
96 1h6u_A Internalin H; cell adhe 99.8 7.7E-20 2.6E-24 162.7 14.8 197 159-371 37-233 (308)
97 2o6s_A Variable lymphocyte rec 99.8 3.7E-19 1.3E-23 149.1 15.3 179 210-396 27-205 (208)
98 4ay9_X Follicle-stimulating ho 99.8 1.5E-17 5.2E-22 150.7 18.2 238 142-386 12-256 (350)
99 4fs7_A Uncharacterized protein 99.8 5.7E-17 2E-21 149.4 21.5 310 37-363 65-374 (394)
100 4gt6_A Cell surface protein; l 99.7 3.6E-16 1.2E-20 144.1 24.6 337 6-367 50-390 (394)
101 1h6t_A Internalin B; cell adhe 99.7 1.5E-17 5E-22 146.7 14.3 176 183-372 42-217 (291)
102 3sb4_A Hypothetical leucine ri 99.7 1.8E-18 6.2E-23 155.5 8.6 103 234-338 225-328 (329)
103 3sb4_A Hypothetical leucine ri 99.7 2.4E-18 8.3E-23 154.7 9.0 126 235-362 202-328 (329)
104 4fdw_A Leucine rich hypothetic 99.7 1.1E-16 3.7E-21 147.0 19.7 269 15-296 109-383 (401)
105 4fdw_A Leucine rich hypothetic 99.7 2.8E-16 9.7E-21 144.2 21.6 265 89-366 111-381 (401)
106 4ay9_X Follicle-stimulating ho 99.7 9.7E-17 3.3E-21 145.5 17.8 240 94-341 12-256 (350)
107 1h6t_A Internalin B; cell adhe 99.7 3.9E-17 1.3E-21 144.0 14.7 171 16-200 43-213 (291)
108 2v9t_B SLIT homolog 2 protein 99.7 1.4E-16 4.7E-21 134.4 16.9 153 214-369 14-166 (220)
109 2xot_A Amphoterin-induced prot 99.7 4.8E-17 1.6E-21 148.1 15.0 154 236-389 40-202 (361)
110 2v9t_B SLIT homolog 2 protein 99.7 1.2E-16 4.2E-21 134.7 16.1 150 238-390 14-166 (220)
111 1m9s_A Internalin B; cell inva 99.7 5.7E-17 2E-21 156.4 15.4 180 183-376 39-218 (605)
112 1m9s_A Internalin B; cell inva 99.7 1.2E-16 4.2E-21 154.1 17.1 172 161-346 41-212 (605)
113 2v70_A SLIT-2, SLIT homolog 2 99.7 1.5E-16 5.3E-21 134.1 15.7 155 214-371 14-169 (220)
114 2v70_A SLIT-2, SLIT homolog 2 99.7 1.8E-16 6.2E-21 133.6 16.1 152 190-344 14-166 (220)
115 3e6j_A Variable lymphocyte rec 99.7 6E-16 2E-20 131.3 17.8 155 213-371 21-175 (229)
116 4ezg_A Putative uncharacterize 99.7 5.5E-17 1.9E-21 134.5 10.7 152 208-367 41-193 (197)
117 3e6j_A Variable lymphocyte rec 99.7 4.8E-16 1.7E-20 131.9 16.6 155 235-393 19-176 (229)
118 4ezg_A Putative uncharacterize 99.7 8E-17 2.7E-21 133.5 11.0 151 233-389 42-194 (197)
119 3cvr_A Invasion plasmid antige 99.7 5.7E-16 1.9E-20 147.9 16.6 187 164-378 60-253 (571)
120 2xot_A Amphoterin-induced prot 99.7 1.8E-16 6.2E-21 144.3 12.5 156 213-368 41-202 (361)
121 3cvr_A Invasion plasmid antige 99.7 3.5E-16 1.2E-20 149.3 15.0 188 187-401 59-255 (571)
122 4gt6_A Cell surface protein; l 99.7 9.7E-15 3.3E-19 134.5 22.8 329 38-388 58-390 (394)
123 1xeu_A Internalin C; cellular 99.7 2.5E-16 8.6E-21 136.5 9.5 170 162-346 18-187 (263)
124 1xeu_A Internalin C; cellular 99.6 6.9E-16 2.4E-20 133.8 10.1 170 18-202 18-187 (263)
125 1w8a_A SLIT protein; signaling 99.6 3.1E-15 1.1E-19 123.2 11.7 131 238-371 11-142 (192)
126 2ell_A Acidic leucine-rich nuc 99.6 2.5E-15 8.5E-20 121.1 8.7 89 280-370 46-135 (168)
127 2ell_A Acidic leucine-rich nuc 99.6 5.8E-15 2E-19 119.0 8.8 130 19-150 24-158 (168)
128 1w8a_A SLIT protein; signaling 99.6 1.3E-14 4.6E-19 119.4 10.4 176 214-393 11-187 (192)
129 4h09_A Hypothetical leucine ri 99.6 1.7E-12 5.7E-17 119.0 25.0 306 14-333 41-358 (379)
130 2je0_A Acidic leucine-rich nuc 99.5 6.1E-15 2.1E-19 116.3 7.0 89 280-370 39-128 (149)
131 2je0_A Acidic leucine-rich nuc 99.5 8.1E-15 2.8E-19 115.6 7.6 127 18-146 16-147 (149)
132 4b8c_D Glucose-repressible alc 99.5 2.9E-15 9.8E-20 148.1 6.1 146 251-400 216-365 (727)
133 2o6r_A Variable lymphocyte rec 99.5 9.3E-14 3.2E-18 112.8 14.0 133 237-372 9-141 (177)
134 4h09_A Hypothetical leucine ri 99.5 1.8E-12 6.3E-17 118.7 23.6 315 39-379 42-356 (379)
135 2o6r_A Variable lymphocyte rec 99.5 1.9E-13 6.5E-18 111.0 14.1 130 261-393 9-141 (177)
136 2wfh_A SLIT homolog 2 protein 99.5 2E-13 7E-18 112.3 14.1 128 238-369 13-140 (193)
137 1dce_A Protein (RAB geranylger 99.5 2.4E-16 8.4E-21 151.1 -4.2 108 260-372 442-550 (567)
138 2wfh_A SLIT homolog 2 protein 99.5 3.1E-13 1.1E-17 111.2 13.8 125 262-390 13-140 (193)
139 1dce_A Protein (RAB geranylger 99.5 1.1E-15 3.7E-20 146.6 -3.6 121 116-241 442-566 (567)
140 4b8c_D Glucose-repressible alc 99.5 1.1E-14 3.7E-19 144.0 2.6 142 229-374 218-360 (727)
141 1a9n_A U2A', U2A'; complex (nu 99.5 1E-13 3.6E-18 112.4 7.6 132 233-368 17-153 (176)
142 1a9n_A U2A', U2A'; complex (nu 99.5 1.5E-13 5E-18 111.5 8.3 133 13-150 13-151 (176)
143 3g39_A Variable lymphocyte rec 99.3 1.7E-11 5.8E-16 98.5 12.6 108 261-371 11-118 (170)
144 3g39_A Variable lymphocyte rec 99.3 2.1E-11 7.3E-16 97.9 12.1 106 284-392 10-118 (170)
145 1ds9_A Outer arm dynein; leuci 99.3 1.8E-14 6.2E-19 119.3 -6.9 130 18-152 17-153 (198)
146 2r9u_A Variable lymphocyte rec 99.3 3.9E-11 1.3E-15 96.8 12.4 106 262-370 15-120 (174)
147 2r9u_A Variable lymphocyte rec 99.3 5.7E-11 2E-15 95.8 12.2 104 285-391 14-120 (174)
148 1ds9_A Outer arm dynein; leuci 99.2 1.7E-14 5.9E-19 119.5 -9.6 111 255-370 44-155 (198)
149 3un9_A NLR family member X1; l 99.2 3.1E-13 1.1E-17 122.8 -4.6 166 210-375 71-259 (372)
150 3un9_A NLR family member X1; l 99.1 6.1E-12 2.1E-16 114.3 0.2 160 42-201 71-253 (372)
151 2ifg_A High affinity nerve gro 99.0 8E-10 2.8E-14 99.8 10.2 105 263-370 12-118 (347)
152 2ifg_A High affinity nerve gro 99.0 3.1E-09 1E-13 95.9 10.7 104 238-344 11-116 (347)
153 2ra8_A Uncharacterized protein 98.8 5.8E-10 2E-14 100.4 1.8 57 208-267 169-227 (362)
154 2ra8_A Uncharacterized protein 98.7 9.4E-09 3.2E-13 92.5 5.8 137 63-202 168-322 (362)
155 3e4g_A ATP synthase subunit S, 98.6 4.1E-09 1.4E-13 83.5 -1.1 84 283-366 61-150 (176)
156 1io0_A Tropomodulin; LRR prote 98.4 1.5E-08 5.2E-13 82.3 -1.4 112 256-367 33-163 (185)
157 3e4g_A ATP synthase subunit S, 98.4 5.1E-08 1.7E-12 77.2 -0.0 82 236-317 62-149 (176)
158 1io0_A Tropomodulin; LRR prote 98.3 5.6E-08 1.9E-12 78.9 -0.1 115 38-152 31-164 (185)
159 3rw6_A Nuclear RNA export fact 97.9 7.5E-06 2.6E-10 69.8 5.1 113 9-122 131-258 (267)
160 3rw6_A Nuclear RNA export fact 97.9 5.8E-06 2E-10 70.5 4.1 63 281-345 168-234 (267)
161 1pgv_A TMD-1, tropomodulin TMD 96.8 0.00018 6.2E-09 57.9 -0.1 38 235-272 41-83 (197)
162 1pgv_A TMD-1, tropomodulin TMD 96.7 0.00034 1.1E-08 56.4 0.7 110 257-366 39-168 (197)
163 3rfe_A Platelet glycoprotein I 95.9 0.023 7.9E-07 42.4 6.8 35 284-318 32-66 (130)
164 3rfe_A Platelet glycoprotein I 95.8 0.02 6.8E-07 42.8 6.2 36 308-343 32-67 (130)
165 2lz0_A Uncharacterized protein 93.4 0.067 2.3E-06 37.7 3.5 49 4-53 5-53 (100)
166 2lz0_A Uncharacterized protein 90.7 0.3 1E-05 34.3 4.2 46 295-341 8-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.3e-45 Score=367.31 Aligned_cols=303 Identities=35% Similarity=0.506 Sum_probs=156.1
Q ss_pred cCCCCCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccC-CCCC
Q 037302 15 FTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGN-LKDL 93 (408)
Q Consensus 15 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-l~~L 93 (408)
|.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+.. .+++|++|++++|.+.+..|..+.. +++|
T Consensus 219 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L 296 (768)
T 3rgz_A 219 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTL 296 (768)
T ss_dssp CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTC
T ss_pred cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcC
Confidence 888889999999888888888888888888888888888765433322 4555555555555555444444433 2555
Q ss_pred ceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCccc-ccCCCCCceEeccCCcccCcCchhhcc-----------
Q 037302 94 DALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQE-VGNLKNLLSLFLDNNNLTGPIPSTLYH----------- 161 (408)
Q Consensus 94 ~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~----------- 161 (408)
++|++++|.+....+..+..+++|++|++++|.+.+..+.. +..+++|++|++++|.+.+..+..+..
T Consensus 297 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls 376 (768)
T 3rgz_A 297 TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLS 376 (768)
T ss_dssp SEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECC
T ss_pred CEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEcc
Confidence 55555555554444444555555555555555443222222 444444444444444433222222222
Q ss_pred ----------------CCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCC
Q 037302 162 ----------------LNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDS 225 (408)
Q Consensus 162 ----------------~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 225 (408)
+++|++|++++|.+....+..+..+++|+.|++++|.+.+..+..+..++.|+.+++++|.+.+
T Consensus 377 ~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 456 (768)
T 3rgz_A 377 SNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 456 (768)
T ss_dssp SSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred CCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccC
Confidence 2233333333333332333344444555555555554444444444444555555555554444
Q ss_pred CCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcC
Q 037302 226 PIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMN 305 (408)
Q Consensus 226 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 305 (408)
..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+....+.++..+++|++|++++|.+.+..+..+..
T Consensus 457 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 536 (768)
T 3rgz_A 457 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 536 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGG
T ss_pred cCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcC
Confidence 44444444455555555555444444444444555555555555544444444444555555555555544444444444
Q ss_pred CCCCcEEEcCCCcc
Q 037302 306 CSQLQNLVLSHNTL 319 (408)
Q Consensus 306 ~~~L~~L~l~~~~~ 319 (408)
+++|+.|++++|++
T Consensus 537 l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 537 CRSLIWLDLNTNLF 550 (768)
T ss_dssp CTTCCEEECCSSEE
T ss_pred CCCCCEEECCCCcc
Confidence 44444444444443
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=7.1e-45 Score=363.83 Aligned_cols=333 Identities=37% Similarity=0.529 Sum_probs=273.8
Q ss_pred cccCCCCCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCC
Q 037302 13 LNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKD 92 (408)
Q Consensus 13 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 92 (408)
..+.++++|++|++++|.+.+..+. +..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..|.. .+++
T Consensus 194 ~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~ 270 (768)
T 3rgz_A 194 VDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKS 270 (768)
T ss_dssp CBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTT
T ss_pred CCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCC
Confidence 3458999999999999999987777 999999999999999998888899999999999999999988666654 8899
Q ss_pred CceeecCCccccccCCCcCCCC-CCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchh-hccCCCCCEEEc
Q 037302 93 LDALRLRGNKLDGLIPSSIGNL-TNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPST-LYHLNQLSNLYL 170 (408)
Q Consensus 93 L~~L~l~~~~i~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l 170 (408)
|++|++++|.+....|..+... ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+.. +..+++|++|++
T Consensus 271 L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~L 350 (768)
T 3rgz_A 271 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDL 350 (768)
T ss_dssp CCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEEC
T ss_pred CCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeC
Confidence 9999999999987777777664 99999999999998888899999999999999999987555544 889999999999
Q ss_pred CCCcCCCCCCccccC---------------------------CCCCCEEEecCcccccccCcccccccccCeEEccCCcC
Q 037302 171 AYNNLVGPLPKEVGN---------------------------MKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRL 223 (408)
Q Consensus 171 ~~~~~~~~~~~~~~~---------------------------~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 223 (408)
++|.+....+..+.. +++|+.|++++|.+.+..+..+..++.|+.+++++|.+
T Consensus 351 s~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l 430 (768)
T 3rgz_A 351 SFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYL 430 (768)
T ss_dssp CSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEE
T ss_pred cCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcc
Confidence 999875444443433 34566666666666555666777778888888888877
Q ss_pred CCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCC
Q 037302 224 DSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPEL 303 (408)
Q Consensus 224 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 303 (408)
.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|++++|.+++..+..+
T Consensus 431 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~ 510 (768)
T 3rgz_A 431 SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 510 (768)
T ss_dssp ESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred cCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHH
Confidence 77777777888888888888888877777778888888888888888877777778888888888888888887888888
Q ss_pred cCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCC
Q 037302 304 MNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIP 348 (408)
Q Consensus 304 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 348 (408)
..+++|++|++++|++.+..+..+..+++|+.|++++|++++.+|
T Consensus 511 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip 555 (768)
T 3rgz_A 511 GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555 (768)
T ss_dssp GGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCC
T ss_pred hcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCC
Confidence 888888888888888877777777777777777777776654443
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.5e-43 Score=344.92 Aligned_cols=398 Identities=20% Similarity=0.196 Sum_probs=268.6
Q ss_pred CCCcccccccccCCCCCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccC
Q 037302 4 NGNAAELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSI 83 (408)
Q Consensus 4 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 83 (408)
+|.++.+...+|.++++|++|++++|.+.+..+..|..+++|++|++++|.+....+..|.++++|++|++++|.+....
T Consensus 42 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~ 121 (606)
T 3t6q_A 42 FNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSID 121 (606)
T ss_dssp TCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGG
T ss_pred CCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCC
Confidence 46788888889999999999999999998888888999999999999999988777888999999999999999988666
Q ss_pred cccccCCCCCceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCc--eEeccCCcccC--------
Q 037302 84 PLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLL--SLFLDNNNLTG-------- 153 (408)
Q Consensus 84 ~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~--~L~l~~~~~~~-------- 153 (408)
+..+.++++|++|++++|.+..+....+..+++|++|++++|.+....+..+..+++|+ .+++++|.+..
T Consensus 122 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~ 201 (606)
T 3t6q_A 122 FIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS 201 (606)
T ss_dssp GSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT
T ss_pred cchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhh
Confidence 77788999999999999988766555556688999999998887766566666666666 56665554332
Q ss_pred -------------------------------------------------------------------cCchhhccCCCCC
Q 037302 154 -------------------------------------------------------------------PIPSTLYHLNQLS 166 (408)
Q Consensus 154 -------------------------------------------------------------------~~~~~~~~~~~L~ 166 (408)
..+..+..+++|+
T Consensus 202 ~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 281 (606)
T 3t6q_A 202 AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQ 281 (606)
T ss_dssp CEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCS
T ss_pred ccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCC
Confidence 2223355567777
Q ss_pred EEEcCCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCC-CcccCCCCCccEEEccCC
Q 037302 167 NLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPI-PPTIGNLTNLTSLDLSSN 245 (408)
Q Consensus 167 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~ 245 (408)
+|++++|.+. ..+..+..+++|++|++++|.+.+..+..+..++.|++++++++.+.... ...+..+++|++|++++|
T Consensus 282 ~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 360 (606)
T 3t6q_A 282 ELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD 360 (606)
T ss_dssp EEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSS
T ss_pred EEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCC
Confidence 7777777766 44556677777777877777776555566667777777777776655322 334566667777777766
Q ss_pred cccccC--CccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCc-CCcCCCCCcEEEcCCCccCCc
Q 037302 246 QLSGLL--PREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPP-ELMNCSQLQNLVLSHNTLSGI 322 (408)
Q Consensus 246 ~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~ 322 (408)
.+.... +..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+. .+..+++|++|++++|.+.+.
T Consensus 361 ~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 440 (606)
T 3t6q_A 361 DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDIS 440 (606)
T ss_dssp CCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTT
T ss_pred ccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCc
Confidence 665433 44455666666666666665555555555666666666666665543332 255556666666666655555
Q ss_pred CCcccccCCCccEEEcCCcccccc---CCcCCCCCCCccEEeCCCCccCCcCCcccc---CCCeEEccCCccCCCCCCCc
Q 037302 323 VPPEIGNLTHLRQLDLSHNFINGT---IPSQLGYIPNISAVDLSKNNLSGVVPASVR---IIPKLIVSENNLELENSTSS 396 (408)
Q Consensus 323 ~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~---~l~~l~l~~n~~~~~~~~~~ 396 (408)
.+..+..+++|++|++++|++++. .+..+..+++|+.|++++|++.+..|..+. ++++|++++|++++.+|+.+
T Consensus 441 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l 520 (606)
T 3t6q_A 441 SEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEAL 520 (606)
T ss_dssp CTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGG
T ss_pred CHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHh
Confidence 555555555566666666555531 123345555555555555555555554443 23355555555555555555
Q ss_pred CCCCCC
Q 037302 397 ENAPPP 402 (408)
Q Consensus 397 ~~~~~~ 402 (408)
.+++.|
T Consensus 521 ~~l~~L 526 (606)
T 3t6q_A 521 SHLKGI 526 (606)
T ss_dssp TTCCSC
T ss_pred Cccccc
Confidence 555544
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3e-43 Score=344.35 Aligned_cols=401 Identities=19% Similarity=0.166 Sum_probs=331.0
Q ss_pred CCCcccccccccCCCCCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccC
Q 037302 4 NGNAAELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSI 83 (408)
Q Consensus 4 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 83 (408)
+|.+..+...+|.++++|++|++++|.+.+..+..+..+++|++|++++|.++...+..+.++++|++|++++|.+....
T Consensus 66 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~ 145 (606)
T 3t6q_A 66 RCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIK 145 (606)
T ss_dssp TCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCC
T ss_pred CCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccC
Confidence 45688888889999999999999999988777888999999999999999888666777888889999999988887543
Q ss_pred cccccCCCCCceeecCCccccccCCCcCCCCCCCC--EEEcCCCe-----------------------------------
Q 037302 84 PLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLT--HLDLSLNQ----------------------------------- 126 (408)
Q Consensus 84 ~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~--~L~l~~~~----------------------------------- 126 (408)
...+..+++|++|++++|.+....+..+..+++|+ .+++++|.
T Consensus 146 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 225 (606)
T 3t6q_A 146 LPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNS 225 (606)
T ss_dssp CCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTC
T ss_pred cccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhcccc
Confidence 33344478888888888877666555555566555 55555443
Q ss_pred ----------------------------------------ecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCC
Q 037302 127 ----------------------------------------LSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLS 166 (408)
Q Consensus 127 ----------------------------------------~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 166 (408)
+....+..+..+++|++|+++++.++ ..+..+..+++|+
T Consensus 226 ~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~ 304 (606)
T 3t6q_A 226 TIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLK 304 (606)
T ss_dssp EEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCC
T ss_pred chhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCC
Confidence 33333344677889999999999988 5667788899999
Q ss_pred EEEcCCCcCCCCCCccccCCCCCCEEEecCcccccc-cCcccccccccCeEEccCCcCCCCC--CcccCCCCCccEEEcc
Q 037302 167 NLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGP-IPSTIGYLNLGGKLDLSHNRLDSPI--PPTIGNLTNLTSLDLS 243 (408)
Q Consensus 167 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~l~l~~~~~~~~~--~~~l~~~~~L~~L~l~ 243 (408)
+|++++|.+....+..+..+++|+.|++++|.+... ....+..++.|+.++++++.+.... +..+..+++|++|+++
T Consensus 305 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~ 384 (606)
T 3t6q_A 305 KLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLS 384 (606)
T ss_dssp EEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECC
T ss_pred EEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECC
Confidence 999999998876677889999999999999987643 3455888999999999999887654 5678889999999999
Q ss_pred CCcccccCCccccCCCCCCEEeCCCCcccccCC-ccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCc
Q 037302 244 SNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIP-PTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGI 322 (408)
Q Consensus 244 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 322 (408)
+|.+.+..+..+..+++|+.|++++|.+....+ ..+..+++|++|++++|.++...+..+..+++|++|++++|++.+.
T Consensus 385 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 464 (606)
T 3t6q_A 385 YNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKG 464 (606)
T ss_dssp SCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGG
T ss_pred CCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCcc
Confidence 999887778888899999999999999875543 4488899999999999999988888899999999999999998752
Q ss_pred ---CCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCCccccCCC--eEEccCCccCCCCCCCcC
Q 037302 323 ---VPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVRIIP--KLIVSENNLELENSTSSE 397 (408)
Q Consensus 323 ---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~--~l~l~~n~~~~~~~~~~~ 397 (408)
....+..+++|++|++++|.+++..|..+..+++|+.|++++|++.+..|+.++++. +|++++|++++.+|..+.
T Consensus 465 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~L~L~~N~l~~~~~~~~~ 544 (606)
T 3t6q_A 465 NIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLP 544 (606)
T ss_dssp EECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSCEEECCSSCCCCCCGGGHH
T ss_pred ccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCcccccEEECcCCcccccCHhhcc
Confidence 235688899999999999999988889999999999999999999999988888666 899999999988888888
Q ss_pred CCCCCCCC
Q 037302 398 NAPPPQAK 405 (408)
Q Consensus 398 ~~~~~~~~ 405 (408)
.++.|+.+
T Consensus 545 ~l~~L~~L 552 (606)
T 3t6q_A 545 ILSQQRTI 552 (606)
T ss_dssp HHHTSSEE
T ss_pred cCCCCCEE
Confidence 77776644
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.7e-41 Score=332.02 Aligned_cols=394 Identities=21% Similarity=0.208 Sum_probs=235.2
Q ss_pred CCCcccccccccCCCCCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccC
Q 037302 4 NGNAAELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSI 83 (408)
Q Consensus 4 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 83 (408)
+|.++.+...+|.++++|++|++++|.+.+..+..|..+++|++|++++|.++...+..|.++++|++|++++|.+....
T Consensus 41 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 120 (606)
T 3vq2_A 41 FNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLE 120 (606)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSS
T ss_pred CCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCcccccc
Confidence 35566777777777777777777777777666667777777777777777777666777777777777777777776555
Q ss_pred cccccCCCCCceeecCCcccccc-CCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCc----eEeccCCcccCcCchh
Q 037302 84 PLEFGNLKDLDALRLRGNKLDGL-IPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLL----SLFLDNNNLTGPIPST 158 (408)
Q Consensus 84 ~~~~~~l~~L~~L~l~~~~i~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~----~L~l~~~~~~~~~~~~ 158 (408)
+..+.++++|++|++++|.+... .|..+.++++|++|++++|.+....+..+..+++|+ +++++++.++......
T Consensus 121 ~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~ 200 (606)
T 3vq2_A 121 SFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQA 200 (606)
T ss_dssp SSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTT
T ss_pred ccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCccc
Confidence 56677777777777777776642 366677777777777777766544444333322221 3333333322111111
Q ss_pred --------------------------------------------------------------------------------
Q 037302 159 -------------------------------------------------------------------------------- 158 (408)
Q Consensus 159 -------------------------------------------------------------------------------- 158 (408)
T Consensus 201 ~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~ 280 (606)
T 3vq2_A 201 FQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK 280 (606)
T ss_dssp TTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS
T ss_pred ccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc
Confidence
Q ss_pred hccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCC-----------------
Q 037302 159 LYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHN----------------- 221 (408)
Q Consensus 159 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~----------------- 221 (408)
+..+++|+.++++++.+.. .+ .+..+++|++|++.+|.+. ..+ .+ .++.|+.++++++
T Consensus 281 ~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l~-~lp-~~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L 355 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQLK-QFP-TL-DLPFLKSLTLTMNKGSISFKKVALPSLSYL 355 (606)
T ss_dssp CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCCS-SCC-CC-CCSSCCEEEEESCSSCEECCCCCCTTCCEE
T ss_pred cccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccCc-ccc-cC-CCCccceeeccCCcCccchhhccCCCCCEE
Confidence 2223344444444444322 12 3445555666666665552 222 22 4444444444444
Q ss_pred -----cCCCC--CCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCC-ccccCCCCCcEEeCCCC
Q 037302 222 -----RLDSP--IPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIP-PTIGYLTNLTSLNLGYN 293 (408)
Q Consensus 222 -----~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~ 293 (408)
.+... .+..+..+++|++|++++|.+.. .+..+..+++|+.|++++|.+....+ ..+..+++|++|++++|
T Consensus 356 ~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 434 (606)
T 3vq2_A 356 DLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT 434 (606)
T ss_dssp ECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTS
T ss_pred ECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCC
Confidence 33221 12333444555555555554442 22445556666666666666554433 45566666777777776
Q ss_pred ccccCCCcCCcCCCCCcEEEcCCCccCC-cCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCC
Q 037302 294 QLSSSIPPELMNCSQLQNLVLSHNTLSG-IVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVP 372 (408)
Q Consensus 294 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 372 (408)
.+....+..+.++++|++|++++|.+.+ ..+..+..+++|++|++++|++++..|..+..+++|+.|++++|++.+..|
T Consensus 435 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 514 (606)
T 3vq2_A 435 NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS 514 (606)
T ss_dssp CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEG
T ss_pred CCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCH
Confidence 6666566666667777777777776664 345666667777777777777776666667777777777777777777666
Q ss_pred ccccC---CCeEEccCCccCCCCCCCcCCCCC-CCC
Q 037302 373 ASVRI---IPKLIVSENNLELENSTSSENAPP-PQA 404 (408)
Q Consensus 373 ~~~~~---l~~l~l~~n~~~~~~~~~~~~~~~-~~~ 404 (408)
..+++ +++|++++|+++ .+|..+..++. |+.
T Consensus 515 ~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~ 549 (606)
T 3vq2_A 515 SHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAF 549 (606)
T ss_dssp GGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCE
T ss_pred HHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcE
Confidence 55553 457777777775 56666666653 543
No 6
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.8e-41 Score=329.55 Aligned_cols=394 Identities=22% Similarity=0.230 Sum_probs=246.6
Q ss_pred CCCcccccccccCCCCCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccC
Q 037302 4 NGNAAELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSI 83 (408)
Q Consensus 4 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 83 (408)
+|.++.+...+|.++++|++|++++|.+.+..+..|..+++|++|++++|.++...+..|.++++|++|++++|.+....
T Consensus 37 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~ 116 (570)
T 2z63_A 37 FNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 116 (570)
T ss_dssp SCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCST
T ss_pred CCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCC
Confidence 34566666667777777777777777666555566667777777777777666555566677777777777777666444
Q ss_pred cccccCCCCCceeecCCcccccc-CCCcCCCCCCCCEEEcCCCeecccCcccccCCCCC----ceEeccCCcccCcCchh
Q 037302 84 PLEFGNLKDLDALRLRGNKLDGL-IPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNL----LSLFLDNNNLTGPIPST 158 (408)
Q Consensus 84 ~~~~~~l~~L~~L~l~~~~i~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L----~~L~l~~~~~~~~~~~~ 158 (408)
+..+.++++|++|++++|.+..+ .|..+.++++|++|++++|.+....+..+..+++| +.++++++.+....+..
T Consensus 117 ~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~ 196 (570)
T 2z63_A 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196 (570)
T ss_dssp TCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTT
T ss_pred CccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHH
Confidence 44566677777777777766543 35566667777777777766654444445444444 45555554443222221
Q ss_pred --------------------------------------------------------------------------------
Q 037302 159 -------------------------------------------------------------------------------- 158 (408)
Q Consensus 159 -------------------------------------------------------------------------------- 158 (408)
T Consensus 197 ~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~ 276 (570)
T 2z63_A 197 FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIID 276 (570)
T ss_dssp TTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTT
T ss_pred hccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchh
Confidence
Q ss_pred -hccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCc
Q 037302 159 -LYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNL 237 (408)
Q Consensus 159 -~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L 237 (408)
+..+++|+.++++++.+. ..+..+..+ +|++|++.+|.+.. .+. ..++.|+.++++++.+....+. ..+++|
T Consensus 277 ~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~-l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L 349 (570)
T 2z63_A 277 LFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQ-FPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSL 349 (570)
T ss_dssp TTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSS-CCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTC
T ss_pred hhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCcccc-cCc--ccccccCEEeCcCCcccccccc--ccCCCC
Confidence 222334444444444333 223333333 44444444444431 111 2344455555555444332221 456777
Q ss_pred cEEEccCCcccccC--CccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCC-cCCcCCCCCcEEEc
Q 037302 238 TSLDLSSNQLSGLL--PREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIP-PELMNCSQLQNLVL 314 (408)
Q Consensus 238 ~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l 314 (408)
++|++++|.+.... +..+..+++|++|++++|.+...... +..+++|++|++++|.+....+ ..+.++++|++|++
T Consensus 350 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 428 (570)
T 2z63_A 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428 (570)
T ss_dssp CEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEEC
T ss_pred CEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeC
Confidence 77777777665432 44566777788888887776644333 6777788888888887775544 45677788888888
Q ss_pred CCCccCCcCCcccccCCCccEEEcCCcccc-ccCCcCCCCCCCccEEeCCCCccCCcCCcccc---CCCeEEccCCccCC
Q 037302 315 SHNTLSGIVPPEIGNLTHLRQLDLSHNFIN-GTIPSQLGYIPNISAVDLSKNNLSGVVPASVR---IIPKLIVSENNLEL 390 (408)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~---~l~~l~l~~n~~~~ 390 (408)
++|.+.+..+..+..+++|++|++++|.++ +.+|..+..+++|+.|++++|++.+..|..+. ++++|++++|++++
T Consensus 429 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 508 (570)
T 2z63_A 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS 508 (570)
T ss_dssp TTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred cCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCC
Confidence 888777666777777788888888888776 35677777788888888888888777776654 45588888888877
Q ss_pred CCCCCcCCCCCCCCC
Q 037302 391 ENSTSSENAPPPQAK 405 (408)
Q Consensus 391 ~~~~~~~~~~~~~~~ 405 (408)
.+|..+.+++.|+.+
T Consensus 509 ~~~~~~~~l~~L~~L 523 (570)
T 2z63_A 509 VPDGIFDRLTSLQKI 523 (570)
T ss_dssp CCTTTTTTCTTCCEE
T ss_pred CCHHHhhcccCCcEE
Confidence 777777777776644
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.6e-40 Score=329.22 Aligned_cols=387 Identities=23% Similarity=0.249 Sum_probs=231.4
Q ss_pred CCCcccccccccCCCCCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccC
Q 037302 4 NGNAAELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSI 83 (408)
Q Consensus 4 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 83 (408)
+|.++.++..+|.++++|++|+++++.+.+..+..+..+++|++|++++|.++...+..|.++++|++|++++|.+....
T Consensus 34 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~ 113 (680)
T 1ziw_A 34 HNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIK 113 (680)
T ss_dssp SSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC
T ss_pred CCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccC
Confidence 45677788888888888899998888888777888888888888888888887665567888888888888888887666
Q ss_pred cccccCCCCCceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCccccc--CCCCCceEeccCCcccCcCchhhcc
Q 037302 84 PLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVG--NLKNLLSLFLDNNNLTGPIPSTLYH 161 (408)
Q Consensus 84 ~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~ 161 (408)
+..|.++++|++|++++|.+....+..+.++++|++|++++|.+....+..+. .+++|++|++++|.+....+..+..
T Consensus 114 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 193 (680)
T 1ziw_A 114 NNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHA 193 (680)
T ss_dssp SCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGG
T ss_pred hhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhh
Confidence 67788888888888888888777777788888888888888877655444433 3467777777776655443333322
Q ss_pred C---------------------------CC--------------------------CCEEEcCCCcCCCCCCccccCCCC
Q 037302 162 L---------------------------NQ--------------------------LSNLYLAYNNLVGPLPKEVGNMKN 188 (408)
Q Consensus 162 ~---------------------------~~--------------------------L~~L~l~~~~~~~~~~~~~~~~~~ 188 (408)
+ ++ |+.|++++|.+....+..+..+++
T Consensus 194 l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 273 (680)
T 1ziw_A 194 IGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQ 273 (680)
T ss_dssp SSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCccc
Confidence 2 22 444444444433333333444444
Q ss_pred CCEEEecCcccccccCcccccccccCeEEccCCcCCC---------CCCcccCCCCCccEEEccCCcccccCCccccCCC
Q 037302 189 LDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDS---------PIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLK 259 (408)
Q Consensus 189 L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~---------~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 259 (408)
|++|++++|.+.+..+..+..++.|+.++++++.... .....+..+++|++|++++|.+.+..+..+..++
T Consensus 274 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 353 (680)
T 1ziw_A 274 LEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLI 353 (680)
T ss_dssp CCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCT
T ss_pred ccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhcccc
Confidence 5555554444444444444444555555544332111 0111345556666666666666655555556666
Q ss_pred CCCEEeCCCCcc----------------------------cccCCccccCCCCCcEEeCCCCccccCCC-cCCcCCCCCc
Q 037302 260 YLDSLSLDGNNL----------------------------IGSIPPTIGYLTNLTSLNLGYNQLSSSIP-PELMNCSQLQ 310 (408)
Q Consensus 260 ~L~~L~l~~~~~----------------------------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~ 310 (408)
+|++|++++|.+ ....+..+..+++|++|++++|.+.+..+ ..+.++++|+
T Consensus 354 ~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~ 433 (680)
T 1ziw_A 354 NLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIF 433 (680)
T ss_dssp TCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCC
T ss_pred CCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCccccc
Confidence 666666655432 11122233334444444444444432222 2344444444
Q ss_pred EEEcCCCccCCcCCcccccCCCccEEEcCCcccc--ccCCcCCCCCCCccEEeCCCCccCCcCCcccc---CCCeEEccC
Q 037302 311 NLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFIN--GTIPSQLGYIPNISAVDLSKNNLSGVVPASVR---IIPKLIVSE 385 (408)
Q Consensus 311 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~---~l~~l~l~~ 385 (408)
+|++++|++.+..+..+..+++|+.|++++|.+. +..|..+..+++|+.|++++|++.++.|..+. ++++|++++
T Consensus 434 ~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~ 513 (680)
T 1ziw_A 434 EIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQH 513 (680)
T ss_dssp EEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred EEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCC
Confidence 4444444444344444444555555555555443 23455566666666666666666666555443 344666666
Q ss_pred CccCC
Q 037302 386 NNLEL 390 (408)
Q Consensus 386 n~~~~ 390 (408)
|++++
T Consensus 514 N~l~~ 518 (680)
T 1ziw_A 514 NNLAR 518 (680)
T ss_dssp SCCGG
T ss_pred CCccc
Confidence 66654
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5.2e-41 Score=328.54 Aligned_cols=386 Identities=20% Similarity=0.197 Sum_probs=302.1
Q ss_pred CCCcccccccccCCCCCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecc-c
Q 037302 4 NGNAAELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNG-S 82 (408)
Q Consensus 4 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~ 82 (408)
+|.++.+...+|.++++|++|++++|.+.+..|..+..+++|++|++++|.+....+..++++++|++|++++|.+.. .
T Consensus 65 ~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 144 (606)
T 3vq2_A 65 RCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCK 144 (606)
T ss_dssp TCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCC
T ss_pred CCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCccccee
Confidence 467888989999999999999999999998888999999999999999999987777889999999999999999875 4
Q ss_pred CcccccCCCCCceeecCCccccccCCCcCCCCCCCC----EEEcCCCeecccCccc------------------------
Q 037302 83 IPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLT----HLDLSLNQLSGRLPQE------------------------ 134 (408)
Q Consensus 83 ~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~----~L~l~~~~~~~~~~~~------------------------ 134 (408)
.|..+.++++|++|++++|.+....+..+..+.+|+ ++++++|.+....+..
T Consensus 145 lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~ 224 (606)
T 3vq2_A 145 LPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTC 224 (606)
T ss_dssp CCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHH
T ss_pred chHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHH
Confidence 688899999999999999988776665554433322 3444443332111110
Q ss_pred --------------------------------------------------------ccCCCCCceEeccCCcccCcCchh
Q 037302 135 --------------------------------------------------------VGNLKNLLSLFLDNNNLTGPIPST 158 (408)
Q Consensus 135 --------------------------------------------------------~~~l~~L~~L~l~~~~~~~~~~~~ 158 (408)
+..+++|+.++++++.+.. .+ .
T Consensus 225 ~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~-~ 302 (606)
T 3vq2_A 225 LQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY-LE-D 302 (606)
T ss_dssp HHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCC-CC-C
T ss_pred hccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchh-hh-h
Confidence 2223444444444444332 11 3
Q ss_pred hccCCCCCEEEcCCCcCCCCCC--------------------ccccCCCCCCEEEecCcccccc--cCcccccccccCeE
Q 037302 159 LYHLNQLSNLYLAYNNLVGPLP--------------------KEVGNMKNLDSLLLNRNSLTGP--IPSTIGYLNLGGKL 216 (408)
Q Consensus 159 ~~~~~~L~~L~l~~~~~~~~~~--------------------~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~l 216 (408)
+..+++|++|++++|.+. .++ ..+..+++|+.|++++|.+.+. .+..+..++.|+.+
T Consensus 303 l~~~~~L~~L~l~~n~l~-~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L 381 (606)
T 3vq2_A 303 VPKHFKWQSLSIIRCQLK-QFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHL 381 (606)
T ss_dssp CCTTCCCSEEEEESCCCS-SCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEE
T ss_pred ccccccCCEEEcccccCc-ccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEe
Confidence 344444455544444431 111 1345677788888888777644 26677889999999
Q ss_pred EccCCcCCCCCCcccCCCCCccEEEccCCcccccCC-ccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCcc
Q 037302 217 DLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLP-REVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQL 295 (408)
Q Consensus 217 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 295 (408)
++++|.+.. .+..+..+++|+.|++++|.+....+ ..+..+++|+.|++++|.+....+..+..+++|++|++++|.+
T Consensus 382 ~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 460 (606)
T 3vq2_A 382 DLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF 460 (606)
T ss_dssp ECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEE
T ss_pred ECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcC
Confidence 999998765 34678889999999999999886655 6788999999999999999877888899999999999999999
Q ss_pred cc-CCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCCc-
Q 037302 296 SS-SIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPA- 373 (408)
Q Consensus 296 ~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~- 373 (408)
.+ ..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..|..+..+++|+.|++++|+++.+.+.
T Consensus 461 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~ 540 (606)
T 3vq2_A 461 KDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGIL 540 (606)
T ss_dssp GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCG
T ss_pred CCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhH
Confidence 86 3677899999999999999999988888999999999999999999988899999999999999999999965543
Q ss_pred -ccc-CCCeEEccCCccCCCCC
Q 037302 374 -SVR-IIPKLIVSENNLELENS 393 (408)
Q Consensus 374 -~~~-~l~~l~l~~n~~~~~~~ 393 (408)
.+. ++++|++++|++.+..+
T Consensus 541 ~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 541 QHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp GGSCTTCCEEECCSCCCCCSST
T ss_pred hhhcccCcEEEccCCCcccCCc
Confidence 222 47899999999987554
No 9
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.1e-39 Score=323.23 Aligned_cols=177 Identities=21% Similarity=0.224 Sum_probs=93.6
Q ss_pred CcccCCCCCccEEEccCCcccccC-CccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccc--cCCCcCCc
Q 037302 228 PPTIGNLTNLTSLDLSSNQLSGLL-PREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLS--SSIPPELM 304 (408)
Q Consensus 228 ~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~ 304 (408)
+..+..+++|+.|++++|.+.+.. ...+..+++|++|++++|.+....+..+..+++|++|++++|.+. +..+..+.
T Consensus 398 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~ 477 (680)
T 1ziw_A 398 SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ 477 (680)
T ss_dssp TTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTT
T ss_pred hhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccc
Confidence 334444555555555555544222 234444555555555555544333334444444444444444433 23344455
Q ss_pred CCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCC--------cCCCCCCCccEEeCCCCccCCcCCcccc
Q 037302 305 NCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIP--------SQLGYIPNISAVDLSKNNLSGVVPASVR 376 (408)
Q Consensus 305 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------~~~~~~~~L~~L~l~~~~l~~~~~~~~~ 376 (408)
.+++|++|++++|.++++.+..+..+++|++|++++|.+++..+ ..+..+++|+.|++++|++..+.+..|.
T Consensus 478 ~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~ 557 (680)
T 1ziw_A 478 PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFK 557 (680)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcc
Confidence 56666666666666665555556666666666666666654321 1245566666666666666655444443
Q ss_pred ---CCCeEEccCCccCCCCCCCcCCCCCCCC
Q 037302 377 ---IIPKLIVSENNLELENSTSSENAPPPQA 404 (408)
Q Consensus 377 ---~l~~l~l~~n~~~~~~~~~~~~~~~~~~ 404 (408)
++++|++++|.+++..+..+.+++.|+.
T Consensus 558 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~ 588 (680)
T 1ziw_A 558 DLFELKIIDLGLNNLNTLPASVFNNQVSLKS 588 (680)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cccCcceeECCCCCCCcCCHhHhCCCCCCCE
Confidence 3446666666666544444556665554
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.8e-40 Score=335.28 Aligned_cols=398 Identities=23% Similarity=0.221 Sum_probs=271.8
Q ss_pred CCCcccccccccCCCCCCcEEEcCCCcccccc-chhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceeccc
Q 037302 4 NGNAAELSQLNFTCFPNLESIIIPYTLLSGRI-PSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGS 82 (408)
Q Consensus 4 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 82 (408)
+|.++.+...+|.++++|++|++++|...+.+ +..|..+++|++|++++|.+....+..|.++++|++|++++|.+.+.
T Consensus 33 ~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~ 112 (844)
T 3j0a_A 33 FNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDA 112 (844)
T ss_dssp SCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSC
T ss_pred CCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcc
Confidence 46677788888888888888888888655554 67788888888888888888877788888888888888888888754
Q ss_pred Cccc--ccCCCCCceeecCCccccccCC-CcCCCCCCCCEEEcCCCeecccCcccccCC--CC-----------------
Q 037302 83 IPLE--FGNLKDLDALRLRGNKLDGLIP-SSIGNLTNLTHLDLSLNQLSGRLPQEVGNL--KN----------------- 140 (408)
Q Consensus 83 ~~~~--~~~l~~L~~L~l~~~~i~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l--~~----------------- 140 (408)
.+.. +.++++|++|++++|.+....+ ..|.++++|++|++++|.+....+..+..+ ++
T Consensus 113 ~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~ 192 (844)
T 3j0a_A 113 VLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSV 192 (844)
T ss_dssp CSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCC
T ss_pred cccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCcccccccc
Confidence 4443 7888888888888888765544 467888888888888887765544444333 33
Q ss_pred -------------CceEeccCCcccCcCchhh------------------------------------cc--CCCCCEEE
Q 037302 141 -------------LLSLFLDNNNLTGPIPSTL------------------------------------YH--LNQLSNLY 169 (408)
Q Consensus 141 -------------L~~L~l~~~~~~~~~~~~~------------------------------------~~--~~~L~~L~ 169 (408)
|+.|++++|.+....+..+ .. .++|+.|+
T Consensus 193 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~ 272 (844)
T 3j0a_A 193 DWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLD 272 (844)
T ss_dssp CCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEE
T ss_pred chhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEE
Confidence 4455554443321111111 11 14566666
Q ss_pred cCCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccc
Q 037302 170 LAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSG 249 (408)
Q Consensus 170 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 249 (408)
+++|.+....+..+..+++|+.|++++|.+.+..+..+..++.|+.|++++|.+....+..+..+++|+.|++++|.+..
T Consensus 273 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~ 352 (844)
T 3j0a_A 273 LSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAI 352 (844)
T ss_dssp CTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCC
T ss_pred CCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCc
Confidence 66665554445556667777777777777766656666777777777777777766666667777777777777777765
Q ss_pred cCCccccCCCCCCEEeCCCCcccccCC----------------------------------------ccccCCCCCcEEe
Q 037302 250 LLPREVGNLKYLDSLSLDGNNLIGSIP----------------------------------------PTIGYLTNLTSLN 289 (408)
Q Consensus 250 ~~~~~~~~~~~L~~L~l~~~~~~~~~~----------------------------------------~~~~~~~~L~~L~ 289 (408)
..+..+..+++|+.|++++|.+..... ..+..+++|++|+
T Consensus 353 ~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~ 432 (844)
T 3j0a_A 353 IQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILI 432 (844)
T ss_dssp CCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEE
T ss_pred cChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceee
Confidence 555666677777777777766542110 0011344455555
Q ss_pred CCCCccccCCCc-CCcCCCCCcEEEcCCCccC-----CcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCC
Q 037302 290 LGYNQLSSSIPP-ELMNCSQLQNLVLSHNTLS-----GIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLS 363 (408)
Q Consensus 290 l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 363 (408)
+++|.++..... .+..+++|+.|++++|.+. +..+..|..+++|+.|++++|.+++..+..+..+++|+.|+++
T Consensus 433 Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 512 (844)
T 3j0a_A 433 LNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLN 512 (844)
T ss_dssp EESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEE
T ss_pred CCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECC
Confidence 555544422211 2333455666666665554 2223456778889999999999888888888899999999999
Q ss_pred CCccCCcCCcccc-CCCeEEccCCccCCCCCCCcCCCCC
Q 037302 364 KNNLSGVVPASVR-IIPKLIVSENNLELENSTSSENAPP 401 (408)
Q Consensus 364 ~~~l~~~~~~~~~-~l~~l~l~~n~~~~~~~~~~~~~~~ 401 (408)
+|+++++.|..+. ++++|++++|++++.+|..+.++..
T Consensus 513 ~N~l~~l~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~L~~ 551 (844)
T 3j0a_A 513 SNRLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSV 551 (844)
T ss_dssp SCCCSSCCCCCCCSCCCEEEEEEECCCCCCSCCCSSCCE
T ss_pred CCCCCccChhhhhccccEEECCCCcCCCCChhHhCCcCE
Confidence 9999988776664 6889999999999999988776554
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.2e-40 Score=319.93 Aligned_cols=383 Identities=21% Similarity=0.267 Sum_probs=320.9
Q ss_pred CCCcccccccccCCCCCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecc-c
Q 037302 4 NGNAAELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNG-S 82 (408)
Q Consensus 4 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~ 82 (408)
+|.++.++..+|.++++|++|+++++.+.+..+..+..+++|++|++++|.+....+..+.++++|++|++++|.+.. .
T Consensus 61 ~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~ 140 (570)
T 2z63_A 61 RCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140 (570)
T ss_dssp TCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCC
T ss_pred CCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceec
Confidence 456888999999999999999999999987777889999999999999999886666679999999999999999875 3
Q ss_pred CcccccCCCCCceeecCCccccccCCCcCCCCCCC----CEEEcCCCeeccc----------------------------
Q 037302 83 IPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNL----THLDLSLNQLSGR---------------------------- 130 (408)
Q Consensus 83 ~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L----~~L~l~~~~~~~~---------------------------- 130 (408)
.|..+.++++|++|++++|.+....+..+..+++| +++++++|.+...
T Consensus 141 lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 220 (570)
T 2z63_A 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTC 220 (570)
T ss_dssp CCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHH
T ss_pred ChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhh
Confidence 68889999999999999998877666666655555 5666665543321
Q ss_pred -----------------------------------------------------CcccccCCCCCceEeccCCcccCcCch
Q 037302 131 -----------------------------------------------------LPQEVGNLKNLLSLFLDNNNLTGPIPS 157 (408)
Q Consensus 131 -----------------------------------------------------~~~~~~~l~~L~~L~l~~~~~~~~~~~ 157 (408)
.+..+..+++|++++++++.+. ..+.
T Consensus 221 ~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~ 299 (570)
T 2z63_A 221 IQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKD 299 (570)
T ss_dssp HHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCB
T ss_pred hcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhh
Confidence 2233455688999999998887 4566
Q ss_pred hhccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCC--CcccCCCC
Q 037302 158 TLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPI--PPTIGNLT 235 (408)
Q Consensus 158 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~--~~~l~~~~ 235 (408)
.+..+ +|+.|++++|.+. ..+. ..+++|+.|++.+|.+....+. ..++.|+.++++++.+.... +..+..++
T Consensus 300 ~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~ 373 (570)
T 2z63_A 300 FSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTT 373 (570)
T ss_dssp CCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCS
T ss_pred hhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccC
Confidence 67777 9999999999887 3333 5789999999999987654433 77899999999999876543 45677889
Q ss_pred CccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCC-ccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEc
Q 037302 236 NLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIP-PTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVL 314 (408)
Q Consensus 236 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 314 (408)
+|++|++++|.+...... +..+++|+.|++++|.+....+ ..+..+++|++|++++|.+....+..+.++++|++|++
T Consensus 374 ~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 452 (570)
T 2z63_A 374 SLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 452 (570)
T ss_dssp CCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEEC
T ss_pred ccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEEC
Confidence 999999999988855444 8899999999999999876544 56789999999999999999888888999999999999
Q ss_pred CCCccC-CcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCCcccc---CCCeEEccCCccCC
Q 037302 315 SHNTLS-GIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVR---IIPKLIVSENNLEL 390 (408)
Q Consensus 315 ~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~---~l~~l~l~~n~~~~ 390 (408)
++|.+. +..+..+..+++|++|++++|++++..|..+..+++|+.|++++|++.+..|..+. ++++|++++|++++
T Consensus 453 ~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccC
Confidence 999987 46778899999999999999999988899999999999999999999999887665 56699999999998
Q ss_pred CCCC
Q 037302 391 ENST 394 (408)
Q Consensus 391 ~~~~ 394 (408)
..|.
T Consensus 533 ~~~~ 536 (570)
T 2z63_A 533 SCPR 536 (570)
T ss_dssp CTTT
T ss_pred CCcc
Confidence 8775
No 12
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.4e-40 Score=325.58 Aligned_cols=371 Identities=23% Similarity=0.310 Sum_probs=265.4
Q ss_pred CCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcC-------------------------------------------
Q 037302 19 PNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSL------------------------------------------- 55 (408)
Q Consensus 19 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~------------------------------------------- 55 (408)
-+++.|+++++.+.|.+|..++.+++|++|++++|.+
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 4788888888888888888888888888888887743
Q ss_pred -----------------------------------CCCCcccccCCCCCcEEeCCCceeccc-----------------C
Q 037302 56 -----------------------------------TGTIPAEIGSLRNLVELDLSNNILNGS-----------------I 83 (408)
Q Consensus 56 -----------------------------------~~~~~~~~~~~~~L~~L~l~~~~~~~~-----------------~ 83 (408)
++ +|..++++++|++|++++|.+.+. .
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i 239 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK 239 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccC
Confidence 12 455677888888888888887764 7
Q ss_pred ccccc--CCCCCceeecCCccccccCCCcCCCCCCCCEEEcCCCe-ecc-cCcccccCC------CCCceEeccCCcccC
Q 037302 84 PLEFG--NLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQ-LSG-RLPQEVGNL------KNLLSLFLDNNNLTG 153 (408)
Q Consensus 84 ~~~~~--~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~-~~~-~~~~~~~~l------~~L~~L~l~~~~~~~ 153 (408)
|..+. ++++|++|++++|.+....|..+.++++|++|++++|. +.+ ..+..+..+ ++|++|++++|.++
T Consensus 240 p~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~- 318 (636)
T 4eco_A 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK- 318 (636)
T ss_dssp TSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-
T ss_pred chhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-
Confidence 77777 88888888888888777777888888888888888887 665 456656554 78888888888887
Q ss_pred cCch--hhccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccc-cCeEEccCCcCCCCCCcc
Q 037302 154 PIPS--TLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNL-GGKLDLSHNRLDSPIPPT 230 (408)
Q Consensus 154 ~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~l~l~~~~~~~~~~~~ 230 (408)
.++. .+..+++|+.|++++|.+....+ .+..+++|+.|++++|.+. ..+..+..++. |+.|++++|.+. ..+..
T Consensus 319 ~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~ 395 (636)
T 4eco_A 319 TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNI 395 (636)
T ss_dssp SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSC
T ss_pred ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchh
Confidence 5665 77888888888888887764455 6777788888888888776 55556777777 888888887776 44555
Q ss_pred cCCCC--CccEEEccCCcccccCCcccc-------CCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCc
Q 037302 231 IGNLT--NLTSLDLSSNQLSGLLPREVG-------NLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPP 301 (408)
Q Consensus 231 l~~~~--~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 301 (408)
+...+ +|+.|++++|.+.+..+..+. .+++|+.|++++|.+.......+..+++|++|++++|.++.....
T Consensus 396 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~ 475 (636)
T 4eco_A 396 FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKN 475 (636)
T ss_dssp CCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSS
T ss_pred hhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHH
Confidence 55433 777888877777665555555 556777777777777644444455677777777777777743333
Q ss_pred CCcCC-------CCCcEEEcCCCccCCcCCcccc--cCCCccEEEcCCccccccCCcCCCCCCCccEEeC------CCCc
Q 037302 302 ELMNC-------SQLQNLVLSHNTLSGIVPPEIG--NLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDL------SKNN 366 (408)
Q Consensus 302 ~~~~~-------~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l------~~~~ 366 (408)
.+... ++|++|++++|+++ ..+..+. .+++|++|++++|++++ +|..+..+++|+.|++ ++|+
T Consensus 476 ~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~ 553 (636)
T 4eco_A 476 SLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNR 553 (636)
T ss_dssp SSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCB
T ss_pred HhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCc
Confidence 33322 27777777777776 4455554 67777777777777775 6666667777777777 4566
Q ss_pred cCCcCCcccc---CCCeEEccCCccCCCCCCCcC
Q 037302 367 LSGVVPASVR---IIPKLIVSENNLELENSTSSE 397 (408)
Q Consensus 367 l~~~~~~~~~---~l~~l~l~~n~~~~~~~~~~~ 397 (408)
+.+..|..+. ++++|++++|++ +.+|..+.
T Consensus 554 l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~ 586 (636)
T 4eco_A 554 TLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT 586 (636)
T ss_dssp CCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred ccccChHHHhcCCCCCEEECCCCcC-CccCHhHh
Confidence 6666666554 344777777777 67776654
No 13
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=5.4e-40 Score=321.42 Aligned_cols=350 Identities=21% Similarity=0.295 Sum_probs=301.7
Q ss_pred cchhhccCCCCcEEeCCCCcCCCC-----------------Cccccc--CCCCCcEEeCCCceecccCcccccCCCCCce
Q 037302 35 IPSEIGALSKLEELALPYNSLTGT-----------------IPAEIG--SLRNLVELDLSNNILNGSIPLEFGNLKDLDA 95 (408)
Q Consensus 35 ~~~~~~~~~~L~~L~l~~~~~~~~-----------------~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 95 (408)
+|..+..+++|++|++++|.+++. .|..++ ++++|++|++++|.+.+..|..+.++++|++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 677799999999999999999864 788888 9999999999999988889999999999999
Q ss_pred eecCCcc-ccc-cCCCcCCCC------CCCCEEEcCCCeecccCcc--cccCCCCCceEeccCCcccCcCchhhccCCCC
Q 037302 96 LRLRGNK-LDG-LIPSSIGNL------TNLTHLDLSLNQLSGRLPQ--EVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQL 165 (408)
Q Consensus 96 L~l~~~~-i~~-~~~~~l~~l------~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 165 (408)
|++++|. ++. ..|..+..+ ++|++|++++|.+. ..+. .+..+++|++|++++|.+.+..+ .+..+++|
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L 355 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKL 355 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEE
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCC
Confidence 9999998 776 556666555 99999999999998 6777 89999999999999999886666 88889999
Q ss_pred CEEEcCCCcCCCCCCccccCCCC-CCEEEecCcccccccCccccccc--ccCeEEccCCcCCCCCCcccC-------CCC
Q 037302 166 SNLYLAYNNLVGPLPKEVGNMKN-LDSLLLNRNSLTGPIPSTIGYLN--LGGKLDLSHNRLDSPIPPTIG-------NLT 235 (408)
Q Consensus 166 ~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~--~L~~l~l~~~~~~~~~~~~l~-------~~~ 235 (408)
+.|++++|.+. ..+..+..+++ |+.|++++|.+. ..+..+...+ .|+.+++++|.+....+..+. .++
T Consensus 356 ~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~ 433 (636)
T 4eco_A 356 ASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGI 433 (636)
T ss_dssp SEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCC
T ss_pred CEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCC
Confidence 99999999987 56667888999 999999999988 5566666544 899999999999887777777 778
Q ss_pred CccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCC-------CCCcEEeCCCCccccCCCcCCc--CC
Q 037302 236 NLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYL-------TNLTSLNLGYNQLSSSIPPELM--NC 306 (408)
Q Consensus 236 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-------~~L~~L~l~~~~~~~~~~~~~~--~~ 306 (408)
+|+.|++++|.+.......+..+++|+.|++++|.+.......+... ++|++|++++|.++ ..+..+. .+
T Consensus 434 ~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l 512 (636)
T 4eco_A 434 NVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTL 512 (636)
T ss_dssp CEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTC
T ss_pred CCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccC
Confidence 99999999999986555666778999999999999985444444433 39999999999999 5666665 89
Q ss_pred CCCcEEEcCCCccCCcCCcccccCCCccEEEc------CCccccccCCcCCCCCCCccEEeCCCCccCCcCCccccCCCe
Q 037302 307 SQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDL------SHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVRIIPK 380 (408)
Q Consensus 307 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l------~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~ 380 (408)
++|++|++++|++++ .+..+..+++|++|++ ++|.+.+.+|..+..+++|+.|++++|++..+......++++
T Consensus 513 ~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~~~L~~ 591 (636)
T 4eco_A 513 PYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNISV 591 (636)
T ss_dssp TTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCCTTCCE
T ss_pred CCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHhHhCcCCE
Confidence 999999999999996 7888889999999999 567788889999999999999999999996554455568999
Q ss_pred EEccCCccCC
Q 037302 381 LIVSENNLEL 390 (408)
Q Consensus 381 l~l~~n~~~~ 390 (408)
|++++|++..
T Consensus 592 L~Ls~N~l~~ 601 (636)
T 4eco_A 592 LDIKDNPNIS 601 (636)
T ss_dssp EECCSCTTCE
T ss_pred EECcCCCCcc
Confidence 9999998864
No 14
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4.1e-39 Score=325.32 Aligned_cols=385 Identities=24% Similarity=0.236 Sum_probs=317.2
Q ss_pred CCcccccccccCCCCCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCccc--ccCCCCCcEEeCCCceeccc
Q 037302 5 GNAAELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAE--IGSLRNLVELDLSNNILNGS 82 (408)
Q Consensus 5 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~ 82 (408)
+.++.++..+|.++++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+.. +..+++|++|++++|.+.+.
T Consensus 59 ~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~ 138 (844)
T 3j0a_A 59 YTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL 138 (844)
T ss_dssp CCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCC
T ss_pred CCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccc
Confidence 3577888899999999999999999999888899999999999999999987644443 88999999999999998755
Q ss_pred Cc-ccccCCCCCceeecCCccccccCCCcCCC--------------------------CC------CCCEEEcCCCeecc
Q 037302 83 IP-LEFGNLKDLDALRLRGNKLDGLIPSSIGN--------------------------LT------NLTHLDLSLNQLSG 129 (408)
Q Consensus 83 ~~-~~~~~l~~L~~L~l~~~~i~~~~~~~l~~--------------------------l~------~L~~L~l~~~~~~~ 129 (408)
.+ ..|.++++|++|++++|.+....+..+.. ++ .|++|++++|.+..
T Consensus 139 ~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 218 (844)
T 3j0a_A 139 YLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTV 218 (844)
T ss_dssp CCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSST
T ss_pred ccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCch
Confidence 43 56889999999999988776544433322 22 27788887775432
Q ss_pred cCcccc------------------------------------cC--CCCCceEeccCCcccCcCchhhccCCCCCEEEcC
Q 037302 130 RLPQEV------------------------------------GN--LKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLA 171 (408)
Q Consensus 130 ~~~~~~------------------------------------~~--l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 171 (408)
..+..+ .. .++|+.|++++|.+....+..+..+++|+.|+++
T Consensus 219 ~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 298 (844)
T 3j0a_A 219 DITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLA 298 (844)
T ss_dssp TTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEE
T ss_pred hHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECC
Confidence 222111 11 2689999999999887777888999999999999
Q ss_pred CCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccC
Q 037302 172 YNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLL 251 (408)
Q Consensus 172 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 251 (408)
+|.+....+..+..+++|+.|++++|.+.+..+..+..++.|+.+++++|.+....+..+..+++|+.|++++|.+....
T Consensus 299 ~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~ 378 (844)
T 3j0a_A 299 YNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH 378 (844)
T ss_dssp SCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS
T ss_pred CCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCccc
Confidence 99998777788999999999999999998777888999999999999999998887788889999999999998765311
Q ss_pred C----------------------------------------ccccCCCCCCEEeCCCCcccccCC-ccccCCCCCcEEeC
Q 037302 252 P----------------------------------------REVGNLKYLDSLSLDGNNLIGSIP-PTIGYLTNLTSLNL 290 (408)
Q Consensus 252 ~----------------------------------------~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l 290 (408)
. ..+..+++|+.|++++|.+..... ..+..+++|++|++
T Consensus 379 ~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L 458 (844)
T 3j0a_A 379 FIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFL 458 (844)
T ss_dssp SCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEE
T ss_pred CCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccC
Confidence 0 112367889999999998875432 24556899999999
Q ss_pred CCCcccc-----CCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCC
Q 037302 291 GYNQLSS-----SIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKN 365 (408)
Q Consensus 291 ~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 365 (408)
++|.+.. ..+..+.++++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+. ++|+.|++++|
T Consensus 459 s~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N 536 (844)
T 3j0a_A 459 GENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRN 536 (844)
T ss_dssp ESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEE
T ss_pred CCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCC
Confidence 9999863 3345678899999999999999988888899999999999999999977666665 89999999999
Q ss_pred ccCCcCCccccCCCeEEccCCccCCC
Q 037302 366 NLSGVVPASVRIIPKLIVSENNLELE 391 (408)
Q Consensus 366 ~l~~~~~~~~~~l~~l~l~~n~~~~~ 391 (408)
++.+..|..+.+++++++++|++.+.
T Consensus 537 ~l~~~~~~~~~~L~~l~l~~Np~~C~ 562 (844)
T 3j0a_A 537 QLLAPNPDVFVSLSVLDITHNKFICE 562 (844)
T ss_dssp CCCCCCSCCCSSCCEEEEEEECCCCS
T ss_pred cCCCCChhHhCCcCEEEecCCCcccc
Confidence 99999999999999999999998763
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5.4e-39 Score=310.61 Aligned_cols=391 Identities=20% Similarity=0.216 Sum_probs=222.4
Q ss_pred CcccccccccCCCCCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecc-cCc
Q 037302 6 NAAELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNG-SIP 84 (408)
Q Consensus 6 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~ 84 (408)
.++.+...+|.++++|++|+++++.+.+..+..+..+++|++|++++|.+.+..+..|.++++|++|++++|.+.. ..+
T Consensus 37 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 116 (549)
T 2z81_A 37 KITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVT 116 (549)
T ss_dssp CCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSS
T ss_pred ccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchh
Confidence 3444444455555555555555555554444445555555555555555544444445555555555555555443 123
Q ss_pred ccccCCCCCceeecCCcc-ccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCC
Q 037302 85 LEFGNLKDLDALRLRGNK-LDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLN 163 (408)
Q Consensus 85 ~~~~~l~~L~~L~l~~~~-i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 163 (408)
..+.++++|++|++++|. +..+.+..+.++++|++|++++|.+....+..+..+++|++|+++.+.+.......+..++
T Consensus 117 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~ 196 (549)
T 2z81_A 117 SLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILS 196 (549)
T ss_dssp CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTT
T ss_pred hhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcc
Confidence 344555555555555554 3333334455555555555555555444444455555555555555444322111223466
Q ss_pred CCCEEEcCCCcCCCCC---CccccCCCCCCEEEecCcccccccC----c-------------------------------
Q 037302 164 QLSNLYLAYNNLVGPL---PKEVGNMKNLDSLLLNRNSLTGPIP----S------------------------------- 205 (408)
Q Consensus 164 ~L~~L~l~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~----~------------------------------- 205 (408)
+|+.|++++|.+.... ......+++|+.|++.++.+.+... .
T Consensus 197 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ 276 (549)
T 2z81_A 197 SVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDV 276 (549)
T ss_dssp TBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTC
T ss_pred cccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhh
Confidence 7777777776654321 0111223444444444433221000 0
Q ss_pred ----------------------------ccccccccCeEEccCCcCCCCCCccc-CCCCCccEEEccCCcccccC---Cc
Q 037302 206 ----------------------------TIGYLNLGGKLDLSHNRLDSPIPPTI-GNLTNLTSLDLSSNQLSGLL---PR 253 (408)
Q Consensus 206 ----------------------------~~~~~~~L~~l~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~---~~ 253 (408)
.+...+.++.++++++.+.. .+..+ ..+++|++|++++|.+.+.. ..
T Consensus 277 ~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~-ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 355 (549)
T 2z81_A 277 VSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL-VPCSFSQHLKSLEFLDLSENLMVEEYLKNSA 355 (549)
T ss_dssp CCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCC-CCHHHHHHCTTCCEEECCSSCCCHHHHHHHT
T ss_pred hhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCcccc-CCHHHHhcCccccEEEccCCccccccccchh
Confidence 01112345555665555543 23222 45778888888888776433 22
Q ss_pred cccCCCCCCEEeCCCCcccccCC--ccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCC
Q 037302 254 EVGNLKYLDSLSLDGNNLIGSIP--PTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLT 331 (408)
Q Consensus 254 ~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 331 (408)
.++.+++|+.|++++|.+..... ..+..+++|++|++++|.++ ..+..+..+++|++|++++|+++... ..+ .+
T Consensus 356 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~-~~~--~~ 431 (549)
T 2z81_A 356 CKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVK-TCI--PQ 431 (549)
T ss_dssp CTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCC-TTS--CT
T ss_pred hhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccccc-chh--cC
Confidence 35667788888888887764321 34667788888888888887 55666777788888888888876332 222 25
Q ss_pred CccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCC-ccccCCCeEEccCCccCCCCCCCcCCCCCCCCC
Q 037302 332 HLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVP-ASVRIIPKLIVSENNLELENSTSSENAPPPQAK 405 (408)
Q Consensus 332 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~ 405 (408)
+|+.|++++|++++. ...+++|+.|++++|+++.+.+ ..+.++++|++++|++++.+|..+.+++.|+.+
T Consensus 432 ~L~~L~Ls~N~l~~~----~~~l~~L~~L~Ls~N~l~~ip~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 502 (549)
T 2z81_A 432 TLEVLDVSNNNLDSF----SLFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKI 502 (549)
T ss_dssp TCSEEECCSSCCSCC----CCCCTTCCEEECCSSCCSSCCCGGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEE
T ss_pred CceEEECCCCChhhh----cccCChhcEEECCCCccCcCCCcccCccCCEEecCCCccCCcCHHHHhcCcccCEE
Confidence 778888888877743 2467888888888888885543 234567788888888888888888888877654
No 16
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=6.6e-39 Score=319.14 Aligned_cols=331 Identities=21% Similarity=0.249 Sum_probs=197.8
Q ss_pred CcccccCCCCCcEEeCCCceecc-----------------cCccccc--CCCCCceeecCCccccccCCCcCCCCCCCCE
Q 037302 59 IPAEIGSLRNLVELDLSNNILNG-----------------SIPLEFG--NLKDLDALRLRGNKLDGLIPSSIGNLTNLTH 119 (408)
Q Consensus 59 ~~~~~~~~~~L~~L~l~~~~~~~-----------------~~~~~~~--~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~ 119 (408)
+|..++++++|++|++++|.+.+ ..|..+. ++++|++|++++|.+....|..+.++++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 44556677777777777777765 2566655 7777777777777766666677777777777
Q ss_pred EEcCCCe-ecc-cCcccccC-------CCCCceEeccCCcccCcCch--hhccCCCCCEEEcCCCcCCCCCCccccCCCC
Q 037302 120 LDLSLNQ-LSG-RLPQEVGN-------LKNLLSLFLDNNNLTGPIPS--TLYHLNQLSNLYLAYNNLVGPLPKEVGNMKN 188 (408)
Q Consensus 120 L~l~~~~-~~~-~~~~~~~~-------l~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 188 (408)
|++++|. +.+ ..|..+.. +++|+.|++++|.+. .++. .+..+++|+.|++++|.+. .++ .+..+++
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~ 596 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVK 596 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCc
Confidence 7777776 554 34443333 347777777777776 4555 6777777777777777766 444 5677777
Q ss_pred CCEEEecCcccccccCcccccccc-cCeEEccCCcCCCCCCcccCCCC--CccEEEccCCcccccCCcc---cc--CCCC
Q 037302 189 LDSLLLNRNSLTGPIPSTIGYLNL-GGKLDLSHNRLDSPIPPTIGNLT--NLTSLDLSSNQLSGLLPRE---VG--NLKY 260 (408)
Q Consensus 189 L~~L~l~~~~~~~~~~~~~~~~~~-L~~l~l~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~~~~~~~~---~~--~~~~ 260 (408)
|+.|++++|.+. .++..+..++. |+.|++++|.+. ..+..+...+ +|+.|++++|.+.+..+.. +. ..++
T Consensus 597 L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~ 674 (876)
T 4ecn_A 597 LTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN 674 (876)
T ss_dssp ESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCC
T ss_pred ceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCC
Confidence 777777777766 45555666666 777777777666 3444444433 3666666666665332211 11 2235
Q ss_pred CCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcC-------CCCCcEEEcCCCccCCcCCcccc--cCC
Q 037302 261 LDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMN-------CSQLQNLVLSHNTLSGIVPPEIG--NLT 331 (408)
Q Consensus 261 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-------~~~L~~L~l~~~~~~~~~~~~~~--~~~ 331 (408)
|+.|++++|.+.......+..+++|+.|++++|.+.......+.. +++|+.|++++|++. .++..+. .++
T Consensus 675 L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~ 753 (876)
T 4ecn_A 675 ASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLP 753 (876)
T ss_dssp EEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCT
T ss_pred cCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCC
Confidence 666666666655333333345566666666666655322222221 225666666666665 3344443 556
Q ss_pred CccEEEcCCccccccCCcCCCCCCCccEEeCCC------CccCCcCCcccc---CCCeEEccCCccCCCCCCCcC
Q 037302 332 HLRQLDLSHNFINGTIPSQLGYIPNISAVDLSK------NNLSGVVPASVR---IIPKLIVSENNLELENSTSSE 397 (408)
Q Consensus 332 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~------~~l~~~~~~~~~---~l~~l~l~~n~~~~~~~~~~~ 397 (408)
+|+.|++++|.+++ +|..+..+++|+.|++++ |++.+..|..+. +|++|++++|++ +.+|..+.
T Consensus 754 ~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~ 826 (876)
T 4ecn_A 754 YLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT 826 (876)
T ss_dssp TCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred CcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc
Confidence 66666666666664 455555666666666644 555555554443 344666666666 56665543
No 17
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.6e-38 Score=298.78 Aligned_cols=354 Identities=20% Similarity=0.168 Sum_probs=201.1
Q ss_pred CCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCC-CCCcccccCCCCCcEEeCCCceecccCcccccCCCCCceee
Q 037302 19 PNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLT-GTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALR 97 (408)
Q Consensus 19 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 97 (408)
++|++|+++++.+.+..+..+..+++|++|++++|.+. ...+..|.++++|++|++++|.+....|..|.++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 56777777777776666666777777777777777664 23345567777777777777776655666677777777777
Q ss_pred cCCccccccC--CCcCCCCCCCCEEEcCCCeecccCccc-ccCCCCCceEeccCCcccCcCchhhccC--CCCCEEEcCC
Q 037302 98 LRGNKLDGLI--PSSIGNLTNLTHLDLSLNQLSGRLPQE-VGNLKNLLSLFLDNNNLTGPIPSTLYHL--NQLSNLYLAY 172 (408)
Q Consensus 98 l~~~~i~~~~--~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~ 172 (408)
+++|.+.... ...+..+++|++|++++|.+....+.. +..+++|++|++++|.+....+..+..+ .+++.+++++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 7777665422 233666777777777777776554444 5667777777777777665555555543 5666777777
Q ss_pred CcCCCCCCcc--------ccCCCCCCEEEecCcccccccCcccccc---cccCeEEccCCcCCCCC----------Cccc
Q 037302 173 NNLVGPLPKE--------VGNMKNLDSLLLNRNSLTGPIPSTIGYL---NLGGKLDLSHNRLDSPI----------PPTI 231 (408)
Q Consensus 173 ~~~~~~~~~~--------~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~l~l~~~~~~~~~----------~~~l 231 (408)
+.+....... +..+++|++|++++|.+.+..+..+... +.++.++++++...... ...+
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 269 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence 6665432221 2244667777777766654433333322 56666666655332110 0011
Q ss_pred C--CCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCC
Q 037302 232 G--NLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQL 309 (408)
Q Consensus 232 ~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 309 (408)
. ..++|+.|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|++++|.+++..+..+.++++|
T Consensus 270 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 349 (455)
T 3v47_A 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKL 349 (455)
T ss_dssp GGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTC
T ss_pred ccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccC
Confidence 1 11345555555555544444445555555555555555544444444555555555555555554444444555555
Q ss_pred cEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCC
Q 037302 310 QNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVP 372 (408)
Q Consensus 310 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 372 (408)
++|++++|++.+..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++.+..|
T Consensus 350 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 350 EVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 555555555554444455555555555555555554444444455555555555555554443
No 18
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.7e-38 Score=297.74 Aligned_cols=370 Identities=21% Similarity=0.212 Sum_probs=307.8
Q ss_pred CcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceec-ccCcccccCCCCCceeecC
Q 037302 21 LESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILN-GSIPLEFGNLKDLDALRLR 99 (408)
Q Consensus 21 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~ 99 (408)
-+.++.++..+. .+|. + .++|++|++++|.++...+..|.++++|++|++++|.+. ...+..|.++++|++|+++
T Consensus 12 ~~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 12 GYNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TTEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred ccccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 346777776665 4444 2 278999999999998777889999999999999999876 3456779999999999999
Q ss_pred CccccccCCCcCCCCCCCCEEEcCCCeecccCccc--ccCCCCCceEeccCCcccCcCchh-hccCCCCCEEEcCCCcCC
Q 037302 100 GNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQE--VGNLKNLLSLFLDNNNLTGPIPST-LYHLNQLSNLYLAYNNLV 176 (408)
Q Consensus 100 ~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~ 176 (408)
+|.+....+..+.++++|++|++++|.+.+..+.. +..+++|++|++++|.+....+.. +..+++|++|++++|.+.
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 99998888899999999999999999987543443 888999999999999998776655 788999999999999988
Q ss_pred CCCCccccCC--CCCCEEEecCcccccccCcc--------cccccccCeEEccCCcCCCCCCcccCC---CCCccEEEcc
Q 037302 177 GPLPKEVGNM--KNLDSLLLNRNSLTGPIPST--------IGYLNLGGKLDLSHNRLDSPIPPTIGN---LTNLTSLDLS 243 (408)
Q Consensus 177 ~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~--------~~~~~~L~~l~l~~~~~~~~~~~~l~~---~~~L~~L~l~ 243 (408)
...+..+..+ ++++.++++++.+.+..... +...+.|+.+++++|.+....+..+.. .++|+.|+++
T Consensus 168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~ 247 (455)
T 3v47_A 168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247 (455)
T ss_dssp CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECT
T ss_pred ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeec
Confidence 7766666655 78999999999887543332 234578999999999887544443332 3789999999
Q ss_pred CCccccc----------CCcccc--CCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcE
Q 037302 244 SNQLSGL----------LPREVG--NLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQN 311 (408)
Q Consensus 244 ~~~~~~~----------~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 311 (408)
++..... ....+. ..++|+.|++++|.+....+..+..+++|++|++++|.+++..+..+.++++|++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 327 (455)
T 3v47_A 248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLK 327 (455)
T ss_dssp TCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred cccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCE
Confidence 8744321 111222 2368999999999998888888999999999999999999888888999999999
Q ss_pred EEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCCcccc---CCCeEEccCCcc
Q 037302 312 LVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVR---IIPKLIVSENNL 388 (408)
Q Consensus 312 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~---~l~~l~l~~n~~ 388 (408)
|++++|.+.+..+..+..+++|++|++++|++++..|..+..+++|+.|++++|+++++.+..+. ++++|++++|++
T Consensus 328 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 328 LNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp EECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred EECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCc
Confidence 99999999888788899999999999999999988899999999999999999999998876654 577999999999
Q ss_pred CCCCCC
Q 037302 389 ELENST 394 (408)
Q Consensus 389 ~~~~~~ 394 (408)
++.+|.
T Consensus 408 ~~~~~~ 413 (455)
T 3v47_A 408 DCSCPR 413 (455)
T ss_dssp CCCTTT
T ss_pred ccCCCc
Confidence 998873
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.8e-38 Score=314.68 Aligned_cols=355 Identities=19% Similarity=0.268 Sum_probs=279.3
Q ss_pred cchhhccCCCCcEEeCCCCcCCC-----------------CCccccc--CCCCCcEEeCCCceecccCcccccCCCCCce
Q 037302 35 IPSEIGALSKLEELALPYNSLTG-----------------TIPAEIG--SLRNLVELDLSNNILNGSIPLEFGNLKDLDA 95 (408)
Q Consensus 35 ~~~~~~~~~~L~~L~l~~~~~~~-----------------~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 95 (408)
+|..+..+++|++|++++|.+++ ..|..++ ++++|++|++++|.+.+..|..+.++++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 66778889999999999998886 2677766 8999999999999887788888999999999
Q ss_pred eecCCcc-ccc-cCCCc-------CCCCCCCCEEEcCCCeecccCcc--cccCCCCCceEeccCCcccCcCchhhccCCC
Q 037302 96 LRLRGNK-LDG-LIPSS-------IGNLTNLTHLDLSLNQLSGRLPQ--EVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQ 164 (408)
Q Consensus 96 L~l~~~~-i~~-~~~~~-------l~~l~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 164 (408)
|++++|. ++. ..|.. +..+++|++|++++|.+. .++. .+..+++|+.|++++|.+. .++ .+..+++
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~ 596 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVK 596 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCc
Confidence 9999997 665 34433 345569999999999888 6666 7888999999999999888 555 7888899
Q ss_pred CCEEEcCCCcCCCCCCccccCCCC-CCEEEecCcccccccCcccccccc--cCeEEccCCcCCCCCCcc---cC--CCCC
Q 037302 165 LSNLYLAYNNLVGPLPKEVGNMKN-LDSLLLNRNSLTGPIPSTIGYLNL--GGKLDLSHNRLDSPIPPT---IG--NLTN 236 (408)
Q Consensus 165 L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~--L~~l~l~~~~~~~~~~~~---l~--~~~~ 236 (408)
|+.|++++|.+. .++..+..+++ |+.|++++|.+. .++..+...+. |+.|++++|.+.+..+.. +. .+++
T Consensus 597 L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~ 674 (876)
T 4ecn_A 597 LTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN 674 (876)
T ss_dssp ESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCC
T ss_pred ceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCC
Confidence 999999999887 66667888888 999999999887 55566655543 899999999886544321 22 3458
Q ss_pred ccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccC-------CCCCcEEeCCCCccccCCCcCCc--CCC
Q 037302 237 LTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGY-------LTNLTSLNLGYNQLSSSIPPELM--NCS 307 (408)
Q Consensus 237 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-------~~~L~~L~l~~~~~~~~~~~~~~--~~~ 307 (408)
|+.|++++|.+.......+..+++|+.|++++|.+.......+.. +++|++|++++|.++ ..+..+. .++
T Consensus 675 L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~ 753 (876)
T 4ecn_A 675 ASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLP 753 (876)
T ss_dssp EEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCT
T ss_pred cCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCC
Confidence 999999999888544444557889999999999887443333332 238999999999988 5666665 889
Q ss_pred CCcEEEcCCCccCCcCCcccccCCCccEEEcCC------ccccccCCcCCCCCCCccEEeCCCCccCCcCCccccCCCeE
Q 037302 308 QLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSH------NFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVRIIPKL 381 (408)
Q Consensus 308 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~l 381 (408)
+|+.|++++|++.+ ++..+..+++|+.|++++ |.+.+.+|..+..+++|+.|++++|++..+.+....+++.|
T Consensus 754 ~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l~~~L~~L 832 (876)
T 4ecn_A 754 YLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQLYIL 832 (876)
T ss_dssp TCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCCSSSCEE
T ss_pred CcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCHhhcCCCCEE
Confidence 99999999999886 577788899999999976 77777888888899999999999999954444455678899
Q ss_pred EccCCccCCCCCCCc
Q 037302 382 IVSENNLELENSTSS 396 (408)
Q Consensus 382 ~l~~n~~~~~~~~~~ 396 (408)
++++|++...-+..+
T Consensus 833 dLs~N~l~~i~~~~~ 847 (876)
T 4ecn_A 833 DIADNPNISIDVTSV 847 (876)
T ss_dssp ECCSCTTCEEECGGG
T ss_pred ECCCCCCCccChHHc
Confidence 999999875444443
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.1e-37 Score=295.40 Aligned_cols=374 Identities=21% Similarity=0.198 Sum_probs=235.7
Q ss_pred CCCcccccccccCCCCCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccC
Q 037302 4 NGNAAELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSI 83 (408)
Q Consensus 4 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 83 (408)
++.++.++...+ ++|++|+++++.+.+..+..+..+++|++|++++|.+++..+..|.++++|++|++++|.+. .+
T Consensus 9 ~n~l~~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~l 84 (520)
T 2z7x_B 9 KNGLIHVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KI 84 (520)
T ss_dssp TSCCSSCCCSCC---TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EE
T ss_pred CCCccccccccc---ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ec
Confidence 456777776544 89999999999998877788999999999999999998777888999999999999999987 44
Q ss_pred cccccCCCCCceeecCCcccccc-CCCcCCCCCCCCEEEcCCCeecccCcccccCCCCC--ceEeccCCcc--cCcCchh
Q 037302 84 PLEFGNLKDLDALRLRGNKLDGL-IPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNL--LSLFLDNNNL--TGPIPST 158 (408)
Q Consensus 84 ~~~~~~l~~L~~L~l~~~~i~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~--~~~~~~~ 158 (408)
|.. .+++|++|++++|.+... .|..+.++++|++|++++|.+.. ..+..+++| +++++++|.+ ....+..
T Consensus 85 p~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~ 159 (520)
T 2z7x_B 85 SCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEG 159 (520)
T ss_dssp ECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTT
T ss_pred Ccc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccccccccc
Confidence 544 789999999999998764 56788999999999999998864 346666777 8888888776 3333332
Q ss_pred hcc--------------------------CCCCCEEEcCCCc------------------------------CCCCCCcc
Q 037302 159 LYH--------------------------LNQLSNLYLAYNN------------------------------LVGPLPKE 182 (408)
Q Consensus 159 ~~~--------------------------~~~L~~L~l~~~~------------------------------~~~~~~~~ 182 (408)
+.. +++|+.+++++|. +.......
T Consensus 160 l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~ 239 (520)
T 2z7x_B 160 LQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIR 239 (520)
T ss_dssp TTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHH
T ss_pred ccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHH
Confidence 222 2333333333321 11000000
Q ss_pred ---ccCCCCCCEEEecCcccccccCccc-----ccccccC--------------------------eEEccCCcCCCCCC
Q 037302 183 ---VGNMKNLDSLLLNRNSLTGPIPSTI-----GYLNLGG--------------------------KLDLSHNRLDSPIP 228 (408)
Q Consensus 183 ---~~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~--------------------------~l~l~~~~~~~~~~ 228 (408)
....++|++|++++|.+.+..+..+ ..++.|+ .++++++.+....
T Consensus 240 ~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~- 318 (520)
T 2z7x_B 240 ILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML- 318 (520)
T ss_dssp HHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCC-
T ss_pred HHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcccccc-
Confidence 0002355666666655554444433 4444444 4444444433211
Q ss_pred cccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccc--cCCccccCCCCCcEEeCCCCccccCCC-cCCcC
Q 037302 229 PTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIG--SIPPTIGYLTNLTSLNLGYNQLSSSIP-PELMN 305 (408)
Q Consensus 229 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~ 305 (408)
....+++|++|++++|.+.+..+..+..+++|++|++++|.+.. ..+..+..+++|++|++++|.++...+ ..+..
T Consensus 319 -~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~ 397 (520)
T 2z7x_B 319 -CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSW 397 (520)
T ss_dssp -CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCC
T ss_pred -chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhcc
Confidence 11455666666666666665555556666666666666666653 223345566666666666666664222 23555
Q ss_pred CCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCCcccc---CCCeEE
Q 037302 306 CSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVR---IIPKLI 382 (408)
Q Consensus 306 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~---~l~~l~ 382 (408)
+++|++|++++|++++..+..+. ++|+.|++++|+++ .+|..+..+++|+.|++++|+++.+.+..+. ++++|+
T Consensus 398 l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 474 (520)
T 2z7x_B 398 TKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIW 474 (520)
T ss_dssp CTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEE
Confidence 66666666666666544333332 46666666666666 4555555666666666666666654443233 345666
Q ss_pred ccCCccCCC
Q 037302 383 VSENNLELE 391 (408)
Q Consensus 383 l~~n~~~~~ 391 (408)
+++|++++.
T Consensus 475 l~~N~~~c~ 483 (520)
T 2z7x_B 475 LHTNPWDCS 483 (520)
T ss_dssp CCSSCBCCC
T ss_pred CcCCCCccc
Confidence 666666553
No 21
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5.7e-38 Score=303.48 Aligned_cols=392 Identities=21% Similarity=0.195 Sum_probs=280.9
Q ss_pred CCCcccccccccCCCCCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccC
Q 037302 4 NGNAAELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSI 83 (408)
Q Consensus 4 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 83 (408)
++.++.++...+ ++|++|+++++.+.+..+..+..+++|++|++++|.++...+..|..+++|++|++++|.+.+..
T Consensus 14 ~~~l~~ip~~~~---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 90 (549)
T 2z81_A 14 SRSFTSIPSGLT---AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLS 90 (549)
T ss_dssp TSCCSSCCSCCC---TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCC
T ss_pred CCccccccccCC---CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccC
Confidence 345666776443 78999999999999877888999999999999999999877888999999999999999999777
Q ss_pred cccccCCCCCceeecCCcccccc-CCCcCCCCCCCCEEEcCCCe-ecccCcccccCCCCCceEeccCCcccCcCchhhcc
Q 037302 84 PLEFGNLKDLDALRLRGNKLDGL-IPSSIGNLTNLTHLDLSLNQ-LSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYH 161 (408)
Q Consensus 84 ~~~~~~l~~L~~L~l~~~~i~~~-~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 161 (408)
+..|.++++|++|++++|.+... .+..+.++++|++|++++|. +....+..+..+++|++|++++|.+....+..+..
T Consensus 91 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 170 (549)
T 2z81_A 91 SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKS 170 (549)
T ss_dssp HHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT
T ss_pred HHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhc
Confidence 77799999999999999998754 45678999999999999997 44444467889999999999999998778888999
Q ss_pred CCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCccccccc---CcccccccccCeEEccCCcCCCCC-----------
Q 037302 162 LNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPI---PSTIGYLNLGGKLDLSHNRLDSPI----------- 227 (408)
Q Consensus 162 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~L~~l~l~~~~~~~~~----------- 227 (408)
+++|++|+++.+.........+..+++|+.|++++|.+.+.. ......++.++.++++++.+.+..
T Consensus 171 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~ 250 (549)
T 2z81_A 171 IRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYI 250 (549)
T ss_dssp CSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGC
T ss_pred cccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhh
Confidence 999999999998875332233456899999999999887531 122234556666666554332100
Q ss_pred -----------------------CcccCCC-----------------------------CCccEEEccCCcccccCCccc
Q 037302 228 -----------------------PPTIGNL-----------------------------TNLTSLDLSSNQLSGLLPREV 255 (408)
Q Consensus 228 -----------------------~~~l~~~-----------------------------~~L~~L~l~~~~~~~~~~~~~ 255 (408)
...+..+ .+|+.|++++|.+.......+
T Consensus 251 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~ 330 (549)
T 2z81_A 251 LELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFS 330 (549)
T ss_dssp TTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHH
T ss_pred ccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHH
Confidence 0011112 345555555555442222222
Q ss_pred cCCCCCCEEeCCCCcccccC---CccccCCCCCcEEeCCCCccccCCC--cCCcCCCCCcEEEcCCCccCCcCCcccccC
Q 037302 256 GNLKYLDSLSLDGNNLIGSI---PPTIGYLTNLTSLNLGYNQLSSSIP--PELMNCSQLQNLVLSHNTLSGIVPPEIGNL 330 (408)
Q Consensus 256 ~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 330 (408)
..+++|++|++++|.+.+.. ...+..+++|++|++++|.++.... ..+..+++|++|++++|+++ ..+..+..+
T Consensus 331 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~ 409 (549)
T 2z81_A 331 QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWP 409 (549)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCC
T ss_pred hcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhccc
Confidence 45677777777777765432 2235566777777777777764321 33566777777777777776 445566667
Q ss_pred CCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCCccccCCCeEEccCCccCCCCCCCcCCCCCCCCC
Q 037302 331 THLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVRIIPKLIVSENNLELENSTSSENAPPPQAK 405 (408)
Q Consensus 331 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~ 405 (408)
++|++|++++|.++. ++..+ .++|+.|++++|++++.. ..+.++++|++++|+++ .+|.. ..++.|+.+
T Consensus 410 ~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~-~~l~~L~~L~Ls~N~l~-~ip~~-~~l~~L~~L 478 (549)
T 2z81_A 410 EKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSFS-LFLPRLQELYISRNKLK-TLPDA-SLFPVLLVM 478 (549)
T ss_dssp TTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCCC-CCCTTCCEEECCSSCCS-SCCCG-GGCTTCCEE
T ss_pred ccccEEECCCCCccc-ccchh--cCCceEEECCCCChhhhc-ccCChhcEEECCCCccC-cCCCc-ccCccCCEE
Confidence 777777777777763 33222 257777778777777653 45667888888888886 67763 556665543
No 22
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1e-35 Score=281.39 Aligned_cols=345 Identities=30% Similarity=0.446 Sum_probs=254.6
Q ss_pred CCCCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCcee
Q 037302 17 CFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDAL 96 (408)
Q Consensus 17 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 96 (408)
.++++++|++.++.+.. ++ .+..+++|++|++++|.++...+ +..+++|++|++++|.+.+..+ +.++++|++|
T Consensus 44 ~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117 (466)
T ss_dssp HHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred HhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence 35678888888887763 33 37778888888888888775433 7888888888888888774443 7788888888
Q ss_pred ecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCC
Q 037302 97 RLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLV 176 (408)
Q Consensus 97 ~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 176 (408)
++++|.+....+ +..+++|++|++++|.+... ..+..+++|++++++. .+... ..+..+++|+.|++++|.+.
T Consensus 118 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~-~~~~~--~~~~~l~~L~~L~l~~n~l~ 190 (466)
T 1o6v_A 118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFGN-QVTDL--KPLANLTTLERLDISSNKVS 190 (466)
T ss_dssp ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEEE-SCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred ECCCCCCCCChH--HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecCC-cccCc--hhhccCCCCCEEECcCCcCC
Confidence 888888775533 77888888888888887643 3477788888888863 33322 23677888888888888766
Q ss_pred CCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCcccc
Q 037302 177 GPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVG 256 (408)
Q Consensus 177 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 256 (408)
.. ..+..+++|++|++++|.+.+..+ +..++.|+.+++++|.+... ..+..+++|++|++++|.+.+..+ +.
T Consensus 191 ~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~ 262 (466)
T 1o6v_A 191 DI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LS 262 (466)
T ss_dssp CC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GT
T ss_pred CC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hh
Confidence 43 346778888888888887765433 56678888888888877653 356677888888888887764433 67
Q ss_pred CCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEE
Q 037302 257 NLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQL 336 (408)
Q Consensus 257 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 336 (408)
.+++|+.|++++|.+....+ +..+++|++|++++|.+++..+ +..+++|+.|++++|++.+..+ +..+++|++|
T Consensus 263 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 336 (466)
T 1o6v_A 263 GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL 336 (466)
T ss_dssp TCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEE
T ss_pred cCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEe
Confidence 77888888888887764432 6778888888888888775432 6778888888888888775543 6778888888
Q ss_pred EcCCccccccCCcCCCCCCCccEEeCCCCccCCcCC-ccccCCCeEEccCCccCC
Q 037302 337 DLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVP-ASVRIIPKLIVSENNLEL 390 (408)
Q Consensus 337 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~l~~l~l~~n~~~~ 390 (408)
++++|.+++. ..+..+++|+.|++++|++.+..| ..+.+++.|++++|++++
T Consensus 337 ~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 337 FFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp ECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGGGTTCTTCCEEECCCEEEEC
T ss_pred ECCCCccCCc--hhhccCCCCCEEeCCCCccCccchhhcCCCCCEEeccCCcccC
Confidence 8888888754 356778888888888888887766 334566688888888876
No 23
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2e-35 Score=279.38 Aligned_cols=335 Identities=30% Similarity=0.455 Sum_probs=283.9
Q ss_pred CCcccccccccCCCCCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCc
Q 037302 5 GNAAELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIP 84 (408)
Q Consensus 5 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 84 (408)
+.+..++ .+..+++|++|+++++.+.+..+ +..+++|++|++++|.+....+ +.++++|++|++++|.+.+..+
T Consensus 56 ~~i~~l~--~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~ 129 (466)
T 1o6v_A 56 LGIKSID--GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP 129 (466)
T ss_dssp SCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG
T ss_pred CCCccCc--chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH
Confidence 3455555 48889999999999999886544 8999999999999999885543 9999999999999999885433
Q ss_pred ccccCCCCCceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCC
Q 037302 85 LEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQ 164 (408)
Q Consensus 85 ~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 164 (408)
+..+++|++|++++|.+... ..+..+++|++|++++ .+... ..+..+++|++|+++++.+... ..+..+++
T Consensus 130 --~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~-~~~~~--~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~ 200 (466)
T 1o6v_A 130 --LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFGN-QVTDL--KPLANLTTLERLDISSNKVSDI--SVLAKLTN 200 (466)
T ss_dssp --GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEEE-SCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTT
T ss_pred --HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecCC-cccCc--hhhccCCCCCEEECcCCcCCCC--hhhccCCC
Confidence 88999999999999998754 3588999999999964 33322 3488999999999999998743 45788999
Q ss_pred CCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccC
Q 037302 165 LSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSS 244 (408)
Q Consensus 165 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 244 (408)
|+.|++++|.+....+ +..+++|+.|++++|.+.+. ..+..+++|+.+++++|.+....+ +..+++|++|++++
T Consensus 201 L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~ 274 (466)
T 1o6v_A 201 LESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGA 274 (466)
T ss_dssp CSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCS
T ss_pred CCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCC
Confidence 9999999998875433 67899999999999988753 467889999999999999876543 78899999999999
Q ss_pred CcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCC
Q 037302 245 NQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVP 324 (408)
Q Consensus 245 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 324 (408)
|.+....+ +..+++|+.|++++|.+....+ +..+++|++|++++|.+++..+ +..+++|++|++++|++.+.
T Consensus 275 n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-- 346 (466)
T 1o6v_A 275 NQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-- 346 (466)
T ss_dssp SCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--
T ss_pred CccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--
Confidence 98875433 7789999999999999875433 7889999999999999986543 77899999999999999865
Q ss_pred cccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCc
Q 037302 325 PEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGV 370 (408)
Q Consensus 325 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 370 (408)
..+..+++|+.|++++|++++..| +..+++|+.|++++|++.+.
T Consensus 347 ~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 347 SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 578899999999999999997776 78999999999999999884
No 24
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.8e-36 Score=287.37 Aligned_cols=371 Identities=22% Similarity=0.220 Sum_probs=264.9
Q ss_pred cEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCceeecCCc
Q 037302 22 ESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGN 101 (408)
Q Consensus 22 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 101 (408)
++++++++.+. .+|..+. ++|++|++++|.+....+..|.++++|++|++++|.+.+..|..|.++++|++|++++|
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 58999999988 4665555 89999999999998777788999999999999999999878889999999999999999
Q ss_pred cccccCCCcCCCCCCCCEEEcCCCeecc-cCcccccCCCCCceEeccCCcccCcCchhhccCCCC--CEEEcCCCcC--C
Q 037302 102 KLDGLIPSSIGNLTNLTHLDLSLNQLSG-RLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQL--SNLYLAYNNL--V 176 (408)
Q Consensus 102 ~i~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~ 176 (408)
.++.++.. .+++|++|++++|.+.. ..+..+..+++|++|++++|.+.. ..+..+++| +.+++++|.+ .
T Consensus 80 ~l~~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 80 KLVKISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp CCCEEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred ceeecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence 99865443 79999999999999986 356889999999999999998874 456778888 9999998877 3
Q ss_pred CCCCccccC--------------------------CCCCCEEEecCcc------------------------------cc
Q 037302 177 GPLPKEVGN--------------------------MKNLDSLLLNRNS------------------------------LT 200 (408)
Q Consensus 177 ~~~~~~~~~--------------------------~~~L~~L~l~~~~------------------------------~~ 200 (408)
...+..+.. +++|+.+++++|. +.
T Consensus 154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~ 233 (520)
T 2z7x_B 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETT 233 (520)
T ss_dssp SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEE
T ss_pred ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccC
Confidence 333332222 4444444444442 22
Q ss_pred cccCcc---cccccccCeEEccCCcCCCCCCccc-----CCCCCccEEEccCCcccccCCcc------------------
Q 037302 201 GPIPST---IGYLNLGGKLDLSHNRLDSPIPPTI-----GNLTNLTSLDLSSNQLSGLLPRE------------------ 254 (408)
Q Consensus 201 ~~~~~~---~~~~~~L~~l~l~~~~~~~~~~~~l-----~~~~~L~~L~l~~~~~~~~~~~~------------------ 254 (408)
+..... ....+.|++++++++.+.+..+..+ ..+++|+.++++++.+. .....
T Consensus 234 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~-~p~~~~~~~~~~~~L~~L~l~~n 312 (520)
T 2z7x_B 234 WNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFG-FPQSYIYEIFSNMNIKNFTVSGT 312 (520)
T ss_dssp HHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCC-SCTHHHHHHHHTCCCSEEEEESS
T ss_pred HHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEecccccccee-cchhhhhcccccCceeEEEcCCC
Confidence 100000 0113478888888888775666665 66677777766666541 11011
Q ss_pred -------ccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCcccc--CCCcCCcCCCCCcEEEcCCCccCC-cCC
Q 037302 255 -------VGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSS--SIPPELMNCSQLQNLVLSHNTLSG-IVP 324 (408)
Q Consensus 255 -------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~-~~~ 324 (408)
...+++|++|++++|.+.+..+..+..+++|++|++++|.+++ ..+..+..+++|++|++++|.+.+ ...
T Consensus 313 ~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~ 392 (520)
T 2z7x_B 313 RMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK 392 (520)
T ss_dssp CCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGG
T ss_pred ccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCccccc
Confidence 1456777788888777776566667777788888888777774 223446677788888888887775 333
Q ss_pred cccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCCc--cccCCCeEEccCCccCCCCCCC-cCCCCC
Q 037302 325 PEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPA--SVRIIPKLIVSENNLELENSTS-SENAPP 401 (408)
Q Consensus 325 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~--~~~~l~~l~l~~n~~~~~~~~~-~~~~~~ 401 (408)
..+..+++|++|++++|++++..|..+. ++|+.|++++|++..+.+. .+.++++|++++|+++ .+|.. +..++.
T Consensus 393 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~ 469 (520)
T 2z7x_B 393 GDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTS 469 (520)
T ss_dssp CSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTT
T ss_pred chhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCc
Confidence 3466677788888888877766555543 6788888888888743332 2345668888888886 56665 777776
Q ss_pred CCCC
Q 037302 402 PQAK 405 (408)
Q Consensus 402 ~~~~ 405 (408)
|+.+
T Consensus 470 L~~L 473 (520)
T 2z7x_B 470 LQKI 473 (520)
T ss_dssp CCEE
T ss_pred ccEE
Confidence 6543
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.5e-35 Score=286.90 Aligned_cols=373 Identities=21% Similarity=0.206 Sum_probs=229.1
Q ss_pred CCcccccccccCCCCCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCc
Q 037302 5 GNAAELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIP 84 (408)
Q Consensus 5 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 84 (408)
++++.++...+ ++|++|+++++.+.+..+..+..+++|++|++++|.++...+..|.++++|++|++++|.+. .+|
T Consensus 41 ~~L~~ip~~~~---~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp 116 (562)
T 3a79_B 41 RNLTHVPKDLP---PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NIS 116 (562)
T ss_dssp SCCCSCCTTSC---TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EEC
T ss_pred CCCccCCCCCC---CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccC
Confidence 34455554332 66777777777777666666777777777777777776666666777777777777777766 334
Q ss_pred ccccCCCCCceeecCCccccccC-CCcCCCCCCCCEEEcCCCeecccCcccccCCCCC--ceEeccCCcc--cCcCchhh
Q 037302 85 LEFGNLKDLDALRLRGNKLDGLI-PSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNL--LSLFLDNNNL--TGPIPSTL 159 (408)
Q Consensus 85 ~~~~~l~~L~~L~l~~~~i~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~--~~~~~~~~ 159 (408)
.. .+++|++|++++|.+.... +..+.++++|++|++++|.+... .+..+++| +++++++|.+ ....+..+
T Consensus 117 ~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l 191 (562)
T 3a79_B 117 CC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESL 191 (562)
T ss_dssp SC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEE
T ss_pred cc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccc
Confidence 33 5677777777777766543 35667777777777777766532 23333444 6777666655 32222222
Q ss_pred cc--------------------------CCCCCEEEcCCCc----------------------------CCCC----CCc
Q 037302 160 YH--------------------------LNQLSNLYLAYNN----------------------------LVGP----LPK 181 (408)
Q Consensus 160 ~~--------------------------~~~L~~L~l~~~~----------------------------~~~~----~~~ 181 (408)
.. +++|+.++++++. +... .+.
T Consensus 192 ~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~ 271 (562)
T 3a79_B 192 QIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQ 271 (562)
T ss_dssp EECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHH
T ss_pred cccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHH
Confidence 22 2223333333221 0000 000
Q ss_pred cccCCCCCCEEEecCcccccccCccc-----ccc--------------------------cccCeEEccCCcCCCCCCcc
Q 037302 182 EVGNMKNLDSLLLNRNSLTGPIPSTI-----GYL--------------------------NLGGKLDLSHNRLDSPIPPT 230 (408)
Q Consensus 182 ~~~~~~~L~~L~l~~~~~~~~~~~~~-----~~~--------------------------~~L~~l~l~~~~~~~~~~~~ 230 (408)
....++|++|++++|.+.+..+..+ ..+ ..++.++++++.+.... .
T Consensus 272 -~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~ 348 (562)
T 3a79_B 272 -FFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--C 348 (562)
T ss_dssp -HHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--C
T ss_pred -hhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--C
Confidence 0011256666666665553333322 111 34666666666554322 1
Q ss_pred cCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccC--CccccCCCCCcEEeCCCCcccc-CCCcCCcCCC
Q 037302 231 IGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSI--PPTIGYLTNLTSLNLGYNQLSS-SIPPELMNCS 307 (408)
Q Consensus 231 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~ 307 (408)
...+++|++|++++|.+.+..+..+..+++|++|++++|.+.... +..+..+++|++|++++|.++. .....+..++
T Consensus 349 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~ 428 (562)
T 3a79_B 349 PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE 428 (562)
T ss_dssp CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence 256678888888888877666677777888888888888776432 3456777888888888888876 3334466778
Q ss_pred CCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCCcccc---CCCeEEcc
Q 037302 308 QLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVR---IIPKLIVS 384 (408)
Q Consensus 308 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~---~l~~l~l~ 384 (408)
+|++|++++|++++..+..+. ++|++|++++|+++ .+|..+..+++|+.|++++|+++.+.+..+. ++++|+++
T Consensus 429 ~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~ 505 (562)
T 3a79_B 429 SILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLH 505 (562)
T ss_dssp TCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECC
T ss_pred cCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEec
Confidence 888888888887654433332 57888888888887 5565555788888888888888865554343 45588888
Q ss_pred CCccCCCC
Q 037302 385 ENNLELEN 392 (408)
Q Consensus 385 ~n~~~~~~ 392 (408)
+|++.+..
T Consensus 506 ~N~~~c~c 513 (562)
T 3a79_B 506 DNPWDCTC 513 (562)
T ss_dssp SCCBCCCH
T ss_pred CCCcCCCc
Confidence 88877643
No 26
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.5e-35 Score=281.38 Aligned_cols=320 Identities=26% Similarity=0.250 Sum_probs=218.5
Q ss_pred cEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCceeecCCc
Q 037302 22 ESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGN 101 (408)
Q Consensus 22 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 101 (408)
+.+++++..+. .+|..+. ++++.|++++|.++...+..|.++++|++|++++|.+....+..|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 56777766665 3444332 47888888888887766777888888888888888887777778888888888888888
Q ss_pred cccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCCCCc
Q 037302 102 KLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPK 181 (408)
Q Consensus 102 ~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 181 (408)
.+..+.+..|.++++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+......
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 170 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence 88777777778888888888888887766667777888888888888877766666777778888888887777655555
Q ss_pred cccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCC
Q 037302 182 EVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYL 261 (408)
Q Consensus 182 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 261 (408)
.+..+++|+.|++.+|.+.......+..++.|+.++++++......+.......+|++|++++|.+.......+..+++|
T Consensus 171 ~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 250 (477)
T 2id5_A 171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL 250 (477)
T ss_dssp HHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTC
T ss_pred HhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcccc
Confidence 67777777777777777665555566666667777776655443333333333466666666666654443455556666
Q ss_pred CEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCc
Q 037302 262 DSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHN 341 (408)
Q Consensus 262 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 341 (408)
+.|++++|.+.......+..+++|++|++++|.+....+..+.++++|+.|++++|.++......|..+++|++|++++|
T Consensus 251 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 251 RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330 (477)
T ss_dssp CEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSS
T ss_pred CeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCC
Confidence 66666666655444455556666666666666666555555566666666666666665554455555666666666666
Q ss_pred ccc
Q 037302 342 FIN 344 (408)
Q Consensus 342 ~~~ 344 (408)
++.
T Consensus 331 ~l~ 333 (477)
T 2id5_A 331 PLA 333 (477)
T ss_dssp CEE
T ss_pred Ccc
Confidence 554
No 27
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.4e-35 Score=278.97 Aligned_cols=301 Identities=24% Similarity=0.221 Sum_probs=156.8
Q ss_pred CCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCceeecC
Q 037302 20 NLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLR 99 (408)
Q Consensus 20 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 99 (408)
++++|+++++.+.+..+..|..+++|++|++++|.+....+..|.++++|++|++++|.+....+..|.++++|++|+++
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 112 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS 112 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECT
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECC
Confidence 45555555555554444455555555555555555554445555555555555555555553333444555555555555
Q ss_pred CccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCCC
Q 037302 100 GNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPL 179 (408)
Q Consensus 100 ~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 179 (408)
+|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.++......+..+++|+.|++++|.+....
T Consensus 113 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~ 192 (477)
T 2id5_A 113 ENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIR 192 (477)
T ss_dssp TSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEEC
T ss_pred CCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeC
Confidence 55555444555555555555555555554444445555555555555555555444444555555555555555554433
Q ss_pred CccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCC
Q 037302 180 PKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLK 259 (408)
Q Consensus 180 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 259 (408)
+..+..+++|+.|++++|...+..+........|+.|++++|.+.......+..+++|+.|++++|.+.......+..++
T Consensus 193 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 272 (477)
T 2id5_A 193 DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL 272 (477)
T ss_dssp TTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCT
T ss_pred hhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccc
Confidence 44455555555555555443333333333333555555555555443333445555555555555555544444455555
Q ss_pred CCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccC
Q 037302 260 YLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLS 320 (408)
Q Consensus 260 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 320 (408)
+|+.|++++|.+....+..+..+++|++|++++|.++...+..+..+++|++|++++|++.
T Consensus 273 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 273 RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp TCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred cCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 5555555555555444445555555555555555555444444455555555555555543
No 28
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.9e-34 Score=279.20 Aligned_cols=376 Identities=21% Similarity=0.204 Sum_probs=281.2
Q ss_pred CCCCCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCce
Q 037302 16 TCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDA 95 (408)
Q Consensus 16 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 95 (408)
..+...++++++++.+.+ +|..+. ++|++|++++|.++...+..|.++++|++|++++|.+.+..+..|.++++|++
T Consensus 28 ~~~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 104 (562)
T 3a79_B 28 FSNELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEY 104 (562)
T ss_dssp -----CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred cccCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCE
Confidence 445566899999999884 665454 79999999999999877789999999999999999999888899999999999
Q ss_pred eecCCccccccCCCcCCCCCCCCEEEcCCCeeccc-CcccccCCCCCceEeccCCcccCcCchhhccCCCC--CEEEcCC
Q 037302 96 LRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGR-LPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQL--SNLYLAY 172 (408)
Q Consensus 96 L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L--~~L~l~~ 172 (408)
|++++|.++.++.. .+++|++|++++|.+... .+..+..+++|++|+++++.+... .+..+++| +.+++++
T Consensus 105 L~Ls~N~l~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~ 178 (562)
T 3a79_B 105 LDVSHNRLQNISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDL 178 (562)
T ss_dssp EECTTSCCCEECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEE
T ss_pred EECCCCcCCccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeec
Confidence 99999999865444 799999999999999853 347899999999999999988753 44555666 9999998
Q ss_pred CcC--CCCCCcccc--------------------------CCCCCCEEEecCcc--------------------------
Q 037302 173 NNL--VGPLPKEVG--------------------------NMKNLDSLLLNRNS-------------------------- 198 (408)
Q Consensus 173 ~~~--~~~~~~~~~--------------------------~~~~L~~L~l~~~~-------------------------- 198 (408)
|.+ ....+..+. .+++|+.+++++|.
T Consensus 179 n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~ 258 (562)
T 3a79_B 179 VSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQH 258 (562)
T ss_dssp SSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEE
T ss_pred ccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecC
Confidence 877 433333333 34456666666542
Q ss_pred --ccccc-C--cccccccccCeEEccCCcCCCCCCccc-----CCCC--------------------------CccEEEc
Q 037302 199 --LTGPI-P--STIGYLNLGGKLDLSHNRLDSPIPPTI-----GNLT--------------------------NLTSLDL 242 (408)
Q Consensus 199 --~~~~~-~--~~~~~~~~L~~l~l~~~~~~~~~~~~l-----~~~~--------------------------~L~~L~l 242 (408)
+.+.. . ......+.|++++++++.+.+..+..+ ..++ +|++|++
T Consensus 259 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l 338 (562)
T 3a79_B 259 IETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSI 338 (562)
T ss_dssp EEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEE
T ss_pred CcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEc
Confidence 10000 0 000112378889998888775555444 2222 3556666
Q ss_pred cCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCC--CcCCcCCCCCcEEEcCCCccC
Q 037302 243 SSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSI--PPELMNCSQLQNLVLSHNTLS 320 (408)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~ 320 (408)
++|.+.... ....+++|++|++++|.+.+..+..+..+++|++|++++|.++... +..+.++++|++|++++|.+.
T Consensus 339 ~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~ 416 (562)
T 3a79_B 339 SDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN 416 (562)
T ss_dssp ESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCB
T ss_pred cCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCC
Confidence 665544221 1257789999999999988777778889999999999999988533 345788999999999999988
Q ss_pred C-cCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCCcc--ccCCCeEEccCCccCCCCCCC-c
Q 037302 321 G-IVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPAS--VRIIPKLIVSENNLELENSTS-S 396 (408)
Q Consensus 321 ~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~--~~~l~~l~l~~n~~~~~~~~~-~ 396 (408)
+ .....+..+++|++|++++|++++..+..+. ++|+.|++++|+++.+.+.. +.++++|++++|+++ .+|.. +
T Consensus 417 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~ 493 (562)
T 3a79_B 417 SHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK-SVPDGVF 493 (562)
T ss_dssp SCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCC-CCCTTST
T ss_pred CccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCC-CCCHHHH
Confidence 7 4445678889999999999999876665543 78999999999998655433 346779999999998 67776 8
Q ss_pred CCCCCCCCC
Q 037302 397 ENAPPPQAK 405 (408)
Q Consensus 397 ~~~~~~~~~ 405 (408)
..++.|+.+
T Consensus 494 ~~l~~L~~L 502 (562)
T 3a79_B 494 DRLTSLQYI 502 (562)
T ss_dssp TTCTTCCCE
T ss_pred hcCCCCCEE
Confidence 888887654
No 29
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=5.1e-34 Score=280.66 Aligned_cols=384 Identities=21% Similarity=0.209 Sum_probs=221.6
Q ss_pred CCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCceeecC
Q 037302 20 NLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLR 99 (408)
Q Consensus 20 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 99 (408)
++++|+|+++.+.+..+..|..+++|++|++++|.++.+.+.+|.++++|++|++++|++....+..|.++++|++|+++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence 56666666666665555556666666666666666665555566666666666666666654455556666666666666
Q ss_pred CccccccCCCcCCCCCCCCEEEcCCCeeccc-CcccccCCCCCceEeccCCcccCcCchhhccCCCCC----EEEcCCCc
Q 037302 100 GNKLDGLIPSSIGNLTNLTHLDLSLNQLSGR-LPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLS----NLYLAYNN 174 (408)
Q Consensus 100 ~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~----~L~l~~~~ 174 (408)
+|.++.+.+..|.++++|++|++++|.+... .+..+..+++|++|++++|.++...+..+..+.+++ .++++.+.
T Consensus 133 ~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~ 212 (635)
T 4g8a_A 133 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 212 (635)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCC
T ss_pred CCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCc
Confidence 6666655555566666666666666665432 344455566666666666655433333222211111 11111111
Q ss_pred CCC------------------------------------------------------C----------------------
Q 037302 175 LVG------------------------------------------------------P---------------------- 178 (408)
Q Consensus 175 ~~~------------------------------------------------------~---------------------- 178 (408)
+.. .
T Consensus 213 l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~ 292 (635)
T 4g8a_A 213 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 292 (635)
T ss_dssp CCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCC
T ss_pred ccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhc
Confidence 100 0
Q ss_pred -----CCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCC-------------------CcccCCC
Q 037302 179 -----LPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPI-------------------PPTIGNL 234 (408)
Q Consensus 179 -----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-------------------~~~l~~~ 234 (408)
....+....+++.+.+.++.+... ..+.....++.+.+.++.+.... ......+
T Consensus 293 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l 370 (635)
T 4g8a_A 293 YYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL 370 (635)
T ss_dssp SCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBC
T ss_pred ccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccc
Confidence 000011112223333222222110 11222223333333332211110 0111234
Q ss_pred CCccEEEccCCcccc-------------------------cCCccccCCCCCCEEeCCCCccccc-CCccccCCCCCcEE
Q 037302 235 TNLTSLDLSSNQLSG-------------------------LLPREVGNLKYLDSLSLDGNNLIGS-IPPTIGYLTNLTSL 288 (408)
Q Consensus 235 ~~L~~L~l~~~~~~~-------------------------~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L 288 (408)
++|+.++++++.+.. .....+..+++|+.+++.++..... ....+..+++++.+
T Consensus 371 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l 450 (635)
T 4g8a_A 371 PSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 450 (635)
T ss_dssp TTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEE
T ss_pred cccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccc
Confidence 455555555543321 1122344556677777766655433 23456677788888
Q ss_pred eCCCCccccCCCcCCcCCCCCcEEEcCCCcc-CCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCcc
Q 037302 289 NLGYNQLSSSIPPELMNCSQLQNLVLSHNTL-SGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNL 367 (408)
Q Consensus 289 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 367 (408)
+++.|.+....+..+..++.|+.|++++|.+ ....+..+..+++|++|++++|++++..|..|.++++|+.|++++|++
T Consensus 451 ~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l 530 (635)
T 4g8a_A 451 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530 (635)
T ss_dssp ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred cccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcC
Confidence 8888888777777777888888888888864 335667788888888888888888877788888888888888888888
Q ss_pred CCcCCcccc---CCCeEEccCCccCCCCCCCcCCCC-CCCCC
Q 037302 368 SGVVPASVR---IIPKLIVSENNLELENSTSSENAP-PPQAK 405 (408)
Q Consensus 368 ~~~~~~~~~---~l~~l~l~~n~~~~~~~~~~~~~~-~~~~~ 405 (408)
+++.|..+. +|++|++++|++++.+|..++.++ .|+.+
T Consensus 531 ~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L 572 (635)
T 4g8a_A 531 FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 572 (635)
T ss_dssp CBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEE
T ss_pred CCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEE
Confidence 888877665 456888888888888888888773 46543
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.9e-33 Score=263.87 Aligned_cols=350 Identities=22% Similarity=0.213 Sum_probs=252.1
Q ss_pred cccccccCCCCCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCccccc
Q 037302 9 ELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFG 88 (408)
Q Consensus 9 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 88 (408)
......+.++++|++|+++++.+.+. | .+..+++|++|++++|.+++. .+..+++|++|++++|.+.+. + +.
T Consensus 32 ~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N~l~~~-~--~~ 103 (457)
T 3bz5_A 32 ATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTNL-D--VT 103 (457)
T ss_dssp TTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C--CT
T ss_pred cccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE---ccccCCCCCEEECcCCCCcee-e--cC
Confidence 34445677889999999999988864 4 588999999999999988754 288899999999999988753 3 78
Q ss_pred CCCCCceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEE
Q 037302 89 NLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNL 168 (408)
Q Consensus 89 ~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 168 (408)
.+++|++|++++|.++.+ .+..+++|++|++++|.+... .+..+++|++|++++|...... .+..+++|+.|
T Consensus 104 ~l~~L~~L~L~~N~l~~l---~~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L 175 (457)
T 3bz5_A 104 PLTKLTYLNCDTNKLTKL---DVSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTL 175 (457)
T ss_dssp TCTTCCEEECCSSCCSCC---CCTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEE
T ss_pred CCCcCCEEECCCCcCCee---cCCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEE
Confidence 899999999999988765 278899999999999988753 3778899999999988533233 46778999999
Q ss_pred EcCCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCccc
Q 037302 169 YLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLS 248 (408)
Q Consensus 169 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 248 (408)
++++|.+... + +..+++|+.|++++|.+.+. .+..++.|+.+++++|++.+. + +..+++|+.|++++|.+.
T Consensus 176 ~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l~ 246 (457)
T 3bz5_A 176 DCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPLT 246 (457)
T ss_dssp ECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCS
T ss_pred ECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCcCC
Confidence 9999988753 3 78889999999999988754 477889999999999988763 3 778889999999999887
Q ss_pred ccCCccccCCCCCCEEeCCCCcccccC--------CccccCCCCCcEEeCCCCccccCCCc--------CCcCCCCCcEE
Q 037302 249 GLLPREVGNLKYLDSLSLDGNNLIGSI--------PPTIGYLTNLTSLNLGYNQLSSSIPP--------ELMNCSQLQNL 312 (408)
Q Consensus 249 ~~~~~~~~~~~~L~~L~l~~~~~~~~~--------~~~~~~~~~L~~L~l~~~~~~~~~~~--------~~~~~~~L~~L 312 (408)
+.. +..+++|+.|+++++.+.... ...+..+++|+.|++++|...+..+. .+.++++|++|
T Consensus 247 ~~~---~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L 323 (457)
T 3bz5_A 247 ELD---VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYL 323 (457)
T ss_dssp CCC---CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEE
T ss_pred CcC---HHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEE
Confidence 543 334556665555544332110 01134567777777777754322111 24445666666
Q ss_pred EcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCCccccCCCeEEccCCccCCCC
Q 037302 313 VLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVRIIPKLIVSENNLELEN 392 (408)
Q Consensus 313 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~l~l~~n~~~~~~ 392 (408)
++++|++++. .+..+++|+.|++++|++++ ++.|+.|.+++|.+.|. .....+..+++++|.++|.|
T Consensus 324 ~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~--~~~~~l~~l~l~~N~l~g~i 390 (457)
T 3bz5_A 324 YLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE--GQTITMPKETLTNNSLTIAV 390 (457)
T ss_dssp ECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE--EEEEECCCBCCBTTBEEEEC
T ss_pred ECCCCccccc---ccccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec--ceeeecCccccccCcEEEEc
Confidence 6666666543 25556666666666666553 23445555555555543 23345668899999999999
Q ss_pred CCCcCCC
Q 037302 393 STSSENA 399 (408)
Q Consensus 393 ~~~~~~~ 399 (408)
|..+...
T Consensus 391 p~~~~~~ 397 (457)
T 3bz5_A 391 SPDLLDQ 397 (457)
T ss_dssp CTTCBCT
T ss_pred ChhHhcc
Confidence 9887554
No 31
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=6.3e-33 Score=252.44 Aligned_cols=305 Identities=30% Similarity=0.396 Sum_probs=140.3
Q ss_pred ccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCceeecCCccccccCCCcCCCCCCCCE
Q 037302 40 GALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTH 119 (408)
Q Consensus 40 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~ 119 (408)
..+++|++|+++++.+... ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+... ..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~~~i~~~--~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~ 114 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASI--QGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLRE 114 (347)
T ss_dssp HHHTTCSEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSE
T ss_pred hhcccccEEEEeCCccccc--hhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCE
Confidence 3455555566655555422 224555555555555555543222 55555566666655555432 23555555555
Q ss_pred EEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCccc
Q 037302 120 LDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSL 199 (408)
Q Consensus 120 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 199 (408)
|++++|.+.... .+..+++|+++++++|..... ...+..+++|++|++++|.+..... +..+++|++|++++|.+
T Consensus 115 L~l~~n~i~~~~--~~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l 189 (347)
T 4fmz_A 115 LYLNEDNISDIS--PLANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQI 189 (347)
T ss_dssp EECTTSCCCCCG--GGTTCTTCCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCC
T ss_pred EECcCCcccCch--hhccCCceeEEECCCCCCccc-ccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcc
Confidence 555555554321 145555555555555533222 2224455555555555555432211 44555555555555544
Q ss_pred ccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccc
Q 037302 200 TGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTI 279 (408)
Q Consensus 200 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 279 (408)
.+... +..++.|+.++++++.+....+ +..+++|++|++++|.+.+... +..+++|++|++++|.+... ..+
T Consensus 190 ~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~ 261 (347)
T 4fmz_A 190 EDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAV 261 (347)
T ss_dssp CCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGG
T ss_pred ccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhH
Confidence 32211 3444444444444444433221 3344445555555544442211 34444444444444444321 233
Q ss_pred cCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccE
Q 037302 280 GYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISA 359 (408)
Q Consensus 280 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 359 (408)
..+++|++|++++|.+++. ..+..+++|++|++++|.+.+..+..+..+++|++|++++|++++..| +..+++|+.
T Consensus 262 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 337 (347)
T 4fmz_A 262 KDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDS 337 (347)
T ss_dssp TTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSE
T ss_pred hcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccce
Confidence 4444444444444444422 223444444444444444443333444444444444444444443333 334444444
Q ss_pred EeCCCCcc
Q 037302 360 VDLSKNNL 367 (408)
Q Consensus 360 L~l~~~~l 367 (408)
|++++|++
T Consensus 338 L~l~~N~i 345 (347)
T 4fmz_A 338 ADFANQVI 345 (347)
T ss_dssp ESSSCC--
T ss_pred eehhhhcc
Confidence 44444444
No 32
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=3.3e-33 Score=258.26 Aligned_cols=312 Identities=24% Similarity=0.192 Sum_probs=243.2
Q ss_pred cCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCceeecCCccccccCCCcCCCCCCCCEE
Q 037302 41 ALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHL 120 (408)
Q Consensus 41 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L 120 (408)
.+++++.|++.++.++...+..+..+++|++|+++++.+....+..|..+++|++|++++|.+..+.+..+..+++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 46788999999888876655667888999999999998887777788889999999999998887888888889999999
Q ss_pred EcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccc
Q 037302 121 DLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLT 200 (408)
Q Consensus 121 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 200 (408)
++++|.+.......+..+++|++|++++|.+....+..+..+++|++|++++|.+... .+..+++|+.+++++|.+.
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccc
Confidence 9999988855555567888999999999888876677788888999999988887643 3567788888888887665
Q ss_pred cccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCcccc
Q 037302 201 GPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIG 280 (408)
Q Consensus 201 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 280 (408)
. +...+.++.++++++.+..... ...++|+.|++++|.+.+. ..+..+++|++|++++|.+....+..+.
T Consensus 200 ~-----~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 269 (390)
T 3o6n_A 200 T-----LAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV 269 (390)
T ss_dssp E-----EECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred c-----cCCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcc
Confidence 2 3445678888888887764322 2246788888888887743 4677788888888888888766677778
Q ss_pred CCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEE
Q 037302 281 YLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAV 360 (408)
Q Consensus 281 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 360 (408)
.+++|++|++++|.++. .+..+..+++|++|++++|++. ..+..+..+++|++|++++|++++. + +..+++|+.|
T Consensus 270 ~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L 344 (390)
T 3o6n_A 270 KMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNL 344 (390)
T ss_dssp TCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEE
T ss_pred ccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEE
Confidence 88888888888888874 3444566788888888888877 3455567778888888888888744 2 5667888888
Q ss_pred eCCCCccCCc
Q 037302 361 DLSKNNLSGV 370 (408)
Q Consensus 361 ~l~~~~l~~~ 370 (408)
++++|++...
T Consensus 345 ~l~~N~~~~~ 354 (390)
T 3o6n_A 345 TLSHNDWDCN 354 (390)
T ss_dssp ECCSSCEEHH
T ss_pred EcCCCCccch
Confidence 8888888654
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=8.7e-33 Score=251.52 Aligned_cols=308 Identities=26% Similarity=0.413 Sum_probs=260.9
Q ss_pred ccccCCCCCcEEeCCCceecccCcccccCCCCCceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCC
Q 037302 61 AEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKN 140 (408)
Q Consensus 61 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 140 (408)
..+..+++|+.|+++++.+.. .+ .+..+++|++|++++|.+..+.+ +..+++|++|++++|.+... ..+..+++
T Consensus 38 ~~~~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~ 111 (347)
T 4fmz_A 38 VTQEELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTN 111 (347)
T ss_dssp ECHHHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTT
T ss_pred ccchhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCc
Confidence 345678899999999999874 33 47889999999999999886644 88999999999999988753 46889999
Q ss_pred CceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccC
Q 037302 141 LLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSH 220 (408)
Q Consensus 141 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~ 220 (408)
|++|+++++.+.... .+..+++|+.+++++|...... ..+..+++|+.|++++|.+.+... +..++.|+.+++++
T Consensus 112 L~~L~l~~n~i~~~~--~~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~ 186 (347)
T 4fmz_A 112 LRELYLNEDNISDIS--PLANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNY 186 (347)
T ss_dssp CSEEECTTSCCCCCG--GGTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTT
T ss_pred CCEEECcCCcccCch--hhccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccC
Confidence 999999999988543 2788999999999999665444 348899999999999998875433 78899999999999
Q ss_pred CcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCC
Q 037302 221 NRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIP 300 (408)
Q Consensus 221 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 300 (408)
|.+....+ +..+++|+.+++++|.+.+... +..+++|++|++++|.+..... +..+++|++|++++|.++..
T Consensus 187 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-- 258 (347)
T 4fmz_A 187 NQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI-- 258 (347)
T ss_dssp SCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--
T ss_pred Cccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--
Confidence 98875433 7788999999999998875433 7788999999999999875433 78899999999999999854
Q ss_pred cCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCC-ccccCCC
Q 037302 301 PELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVP-ASVRIIP 379 (408)
Q Consensus 301 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~l~ 379 (408)
..+..+++|++|++++|.+.+. ..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..| ..+.+++
T Consensus 259 ~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~ 336 (347)
T 4fmz_A 259 NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMD 336 (347)
T ss_dssp GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGGGGGCTTCS
T ss_pred hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccChhhhhccc
Confidence 4678899999999999999865 568899999999999999998888889999999999999999999877 6677888
Q ss_pred eEEccCCccC
Q 037302 380 KLIVSENNLE 389 (408)
Q Consensus 380 ~l~l~~n~~~ 389 (408)
+|++++|+++
T Consensus 337 ~L~l~~N~i~ 346 (347)
T 4fmz_A 337 SADFANQVIK 346 (347)
T ss_dssp EESSSCC---
T ss_pred eeehhhhccc
Confidence 9999999985
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=3.4e-33 Score=258.23 Aligned_cols=308 Identities=22% Similarity=0.221 Sum_probs=145.4
Q ss_pred CCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCceeec
Q 037302 19 PNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRL 98 (408)
Q Consensus 19 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 98 (408)
++++.++++++.+....+..+..+++|++|+++++.+....+..|..+++|++|++++|.+....+..+..+++|++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 45555555555444333333445555555555555554444444555555555555555554444444455555555555
Q ss_pred CCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCC
Q 037302 99 RGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGP 178 (408)
Q Consensus 99 ~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 178 (408)
++|.+..+.+..+..+++|++|++++|.+....+..+..+++|++|++++|.++.. .+..+++|+.+++++|.+.
T Consensus 125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~-- 199 (390)
T 3o6n_A 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS-- 199 (390)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCS--
T ss_pred CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccc--
Confidence 55555444444444555555555555555444444445555555555555544422 1333455555555544432
Q ss_pred CCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCC
Q 037302 179 LPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNL 258 (408)
Q Consensus 179 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 258 (408)
.+...++|+.|++++|.+..... ...+.|+.++++++.+... ..+..+++|++|++++|.+.+..+..+..+
T Consensus 200 ---~~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l 271 (390)
T 3o6n_A 200 ---TLAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKM 271 (390)
T ss_dssp ---EEECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred ---ccCCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcccc
Confidence 12333445555555554432211 1224455555555544432 234444555555555555544444444455
Q ss_pred CCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEc
Q 037302 259 KYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDL 338 (408)
Q Consensus 259 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 338 (408)
++|+.|++++|.+... +..+..+++|++|++++|.+. ..+..+..+++|++|++++|.++.. .+..+++|+.|++
T Consensus 272 ~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~---~~~~~~~L~~L~l 346 (390)
T 3o6n_A 272 QRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL---KLSTHHTLKNLTL 346 (390)
T ss_dssp SSCCEEECCSSCCCEE-ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC---CCCTTCCCSEEEC
T ss_pred ccCCEEECCCCcCccc-CcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee---CchhhccCCEEEc
Confidence 5555555555544422 222334455555555555544 2233344445555555555554432 1334445555555
Q ss_pred CCcccc
Q 037302 339 SHNFIN 344 (408)
Q Consensus 339 ~~~~~~ 344 (408)
++|++.
T Consensus 347 ~~N~~~ 352 (390)
T 3o6n_A 347 SHNDWD 352 (390)
T ss_dssp CSSCEE
T ss_pred CCCCcc
Confidence 555444
No 35
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.2e-31 Score=263.69 Aligned_cols=379 Identities=19% Similarity=0.182 Sum_probs=275.2
Q ss_pred EEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCceeecCCcc
Q 037302 23 SIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNK 102 (408)
Q Consensus 23 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 102 (408)
+.+.++..+. .+|..+. +++++|+|++|.++...+.+|.++++|++|++++|++....+.+|.++++|++|++++|+
T Consensus 35 ~~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~ 111 (635)
T 4g8a_A 35 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 111 (635)
T ss_dssp EEECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc
Confidence 4566655555 4554443 479999999999998878899999999999999999987888889999999999999999
Q ss_pred ccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCc-CchhhccCCCCCEEEcCCCcCCCCCCc
Q 037302 103 LDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGP-IPSTLYHLNQLSNLYLAYNNLVGPLPK 181 (408)
Q Consensus 103 i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~ 181 (408)
++.+.+..|.++++|++|++++|.+....+..|..+++|++|++++|.+... .+..+..+++|++|++++|.+....+.
T Consensus 112 l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 191 (635)
T 4g8a_A 112 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 191 (635)
T ss_dssp CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccc
Confidence 9988888899999999999999999877777899999999999999998754 456778899999999999987654443
Q ss_pred cccCCCC----CCEEEecCccccccc------------------------------------------------------
Q 037302 182 EVGNMKN----LDSLLLNRNSLTGPI------------------------------------------------------ 203 (408)
Q Consensus 182 ~~~~~~~----L~~L~l~~~~~~~~~------------------------------------------------------ 203 (408)
.+..+.+ ...++++.+.+....
T Consensus 192 ~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~ 271 (635)
T 4g8a_A 192 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 271 (635)
T ss_dssp GGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCC
T ss_pred cccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccc
Confidence 3322211 112222222211000
Q ss_pred ---------------------------CcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCC----
Q 037302 204 ---------------------------PSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLP---- 252 (408)
Q Consensus 204 ---------------------------~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~---- 252 (408)
...+.....++.+.+..+.+... ..+....+++.|++.++.+.....
T Consensus 272 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 349 (635)
T 4g8a_A 272 KSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTLKLK 349 (635)
T ss_dssp TTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCCCBCT
T ss_pred ccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCcccch
Confidence 00011122233333333322211 234455677888877765442211
Q ss_pred ---------------ccccCCCCCCEEeCCCCccccc--C-----------------------CccccCCCCCcEEeCCC
Q 037302 253 ---------------REVGNLKYLDSLSLDGNNLIGS--I-----------------------PPTIGYLTNLTSLNLGY 292 (408)
Q Consensus 253 ---------------~~~~~~~~L~~L~l~~~~~~~~--~-----------------------~~~~~~~~~L~~L~l~~ 292 (408)
.....+++|+.++++++.+... . ...+..+++|+.+++.+
T Consensus 350 ~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~ 429 (635)
T 4g8a_A 350 SLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH 429 (635)
T ss_dssp TCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTT
T ss_pred hhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhh
Confidence 1123467888888887765321 1 12234456677777766
Q ss_pred CccccCCC-cCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCcccc-ccCCcCCCCCCCccEEeCCCCccCCc
Q 037302 293 NQLSSSIP-PELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFIN-GTIPSQLGYIPNISAVDLSKNNLSGV 370 (408)
Q Consensus 293 ~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~l~~~ 370 (408)
+......+ ..+..+++++.++++.|.+....+..+..++.++.|++++|... ...|..+..+++|+.|++++|+++++
T Consensus 430 ~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l 509 (635)
T 4g8a_A 430 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 509 (635)
T ss_dssp SEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE
T ss_pred ccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCc
Confidence 65543332 44677888999999999888777888889999999999999754 35788899999999999999999999
Q ss_pred CCcccc---CCCeEEccCCccCCCCCCCcCCCCCCCCCC
Q 037302 371 VPASVR---IIPKLIVSENNLELENSTSSENAPPPQAKP 406 (408)
Q Consensus 371 ~~~~~~---~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~ 406 (408)
.|..|. +|++|++++|++++..|..+.+++.|+.+-
T Consensus 510 ~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 548 (635)
T 4g8a_A 510 SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD 548 (635)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEE
T ss_pred ChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEE
Confidence 998876 466999999999998899999999887653
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=4.1e-32 Score=264.19 Aligned_cols=312 Identities=24% Similarity=0.202 Sum_probs=237.5
Q ss_pred cCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCceeecCCccccccCCCcCCCCCCCCEE
Q 037302 41 ALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHL 120 (408)
Q Consensus 41 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L 120 (408)
.+.+++.+++.++.+....+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+..+.+..|.++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 45788888888888876666667888888999998888887777788888889999998888887877788888889999
Q ss_pred EcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccc
Q 037302 121 DLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLT 200 (408)
Q Consensus 121 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 200 (408)
++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+... .+..+++|+.+++++|.+.
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCccc
Confidence 9888888865555667888888888888888877777788888888888888877643 2566788888888887665
Q ss_pred cccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCcccc
Q 037302 201 GPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIG 280 (408)
Q Consensus 201 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 280 (408)
. +..++.|+.++++++.+....+. ..++|+.|++++|.+++. ..+..+++|+.|++++|.+....+..+.
T Consensus 206 ~-----l~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 275 (597)
T 3oja_B 206 T-----LAIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV 275 (597)
T ss_dssp E-----EECCTTCSEEECCSSCCCEEECS---CCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred c-----ccCCchhheeeccCCcccccccc---cCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhc
Confidence 2 34556788888888776543222 135788888888877643 5567778888888888887766677777
Q ss_pred CCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEE
Q 037302 281 YLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAV 360 (408)
Q Consensus 281 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 360 (408)
.+++|++|++++|.++. .+..+..+++|+.|++++|.+. ..+..+..+++|+.|++++|.+++. + +..+++|+.|
T Consensus 276 ~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L 350 (597)
T 3oja_B 276 KMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNL 350 (597)
T ss_dssp TCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEE
T ss_pred CccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEE
Confidence 88888888888888774 3444566788888888888877 4455667778888888888887744 2 5567788888
Q ss_pred eCCCCccCCc
Q 037302 361 DLSKNNLSGV 370 (408)
Q Consensus 361 ~l~~~~l~~~ 370 (408)
++++|++.+.
T Consensus 351 ~l~~N~~~~~ 360 (597)
T 3oja_B 351 TLSHNDWDCN 360 (597)
T ss_dssp ECCSSCEEHH
T ss_pred EeeCCCCCCh
Confidence 8888887643
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2.9e-31 Score=258.27 Aligned_cols=311 Identities=22% Similarity=0.221 Sum_probs=270.8
Q ss_pred CCCCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCcee
Q 037302 17 CFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDAL 96 (408)
Q Consensus 17 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 96 (408)
.+++++.++++++.+....+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+....+..|.++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 34788999999999886666778999999999999999987777899999999999999999998888889999999999
Q ss_pred ecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCC
Q 037302 97 RLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLV 176 (408)
Q Consensus 97 ~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 176 (408)
++++|.+..+++..|..+++|++|++++|.+....+..+..+++|++|++++|.+... .+..+++|+.+++++|.+.
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCccc
Confidence 9999999978777789999999999999999888788899999999999999998754 3566899999999998765
Q ss_pred CCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCcccc
Q 037302 177 GPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVG 256 (408)
Q Consensus 177 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 256 (408)
.+...++|+.|++++|.+...... ..+.|+.|++++|.+.+ +..+..+++|+.|++++|.+.+..+..+.
T Consensus 206 -----~l~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 275 (597)
T 3oja_B 206 -----TLAIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFV 275 (597)
T ss_dssp -----EEECCTTCSEEECCSSCCCEEECS---CCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred -----cccCCchhheeeccCCcccccccc---cCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhc
Confidence 346677899999999988644322 24689999999999876 36788899999999999999988888899
Q ss_pred CCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEE
Q 037302 257 NLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQL 336 (408)
Q Consensus 257 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 336 (408)
.+++|+.|++++|.+... +..+..+++|++|++++|.++ ..+..+..+++|+.|++++|.+... .+..+++|+.|
T Consensus 276 ~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~---~~~~~~~L~~L 350 (597)
T 3oja_B 276 KMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL---KLSTHHTLKNL 350 (597)
T ss_dssp TCSSCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC---CCCTTCCCSEE
T ss_pred CccCCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc---ChhhcCCCCEE
Confidence 999999999999998753 455677899999999999999 5666678899999999999998755 36778999999
Q ss_pred EcCCccccc
Q 037302 337 DLSHNFING 345 (408)
Q Consensus 337 ~l~~~~~~~ 345 (408)
++++|++..
T Consensus 351 ~l~~N~~~~ 359 (597)
T 3oja_B 351 TLSHNDWDC 359 (597)
T ss_dssp ECCSSCEEH
T ss_pred EeeCCCCCC
Confidence 999999874
No 38
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=7.8e-31 Score=245.87 Aligned_cols=353 Identities=26% Similarity=0.297 Sum_probs=174.7
Q ss_pred CCCcccccccccCCCCCCcEEEcCCCccccccchhhccCCC-------------CcEEeCCCCcCCCCCcccccCCCCCc
Q 037302 4 NGNAAELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSK-------------LEELALPYNSLTGTIPAEIGSLRNLV 70 (408)
Q Consensus 4 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-------------L~~L~l~~~~~~~~~~~~~~~~~~L~ 70 (408)
+++++.++. ++.++++|++|+++++.+.+..|..+..+.+ +++|++++|.+++. +. ..++|+
T Consensus 20 ~n~l~~iP~-~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l-p~---~~~~L~ 94 (454)
T 1jl5_A 20 SSNLTEMPV-EAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSL-PE---LPPHLE 94 (454)
T ss_dssp ---------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC-CS---CCTTCS
T ss_pred cCchhhCCh-hHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccC-CC---CcCCCC
Confidence 345566664 4788888888888888777777777766654 37777777776632 22 235677
Q ss_pred EEeCCCceecccCcccccCCCCCceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCc
Q 037302 71 ELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNN 150 (408)
Q Consensus 71 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 150 (408)
+|++++|.+.+ .|.. .++|++|++++|.+..+.. ..++|++|++++|.+.. .+ .+..+++|++|++++|.
T Consensus 95 ~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~~----~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~ 164 (454)
T 1jl5_A 95 SLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALSD----LPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNS 164 (454)
T ss_dssp EEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCCS----CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSC
T ss_pred EEEccCCcCCc-cccc---cCCCcEEECCCCccCcccC----CCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCc
Confidence 77777777663 3432 3567777776666553321 11567777777776664 33 46666777777777666
Q ss_pred ccCcCchhhccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcc
Q 037302 151 LTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPT 230 (408)
Q Consensus 151 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~ 230 (408)
++. .+.. .++|++|++++|.+.. .+ .+..+++|+.|++++|.+.+. +. ..+.|+.+++++|.+.. .+ .
T Consensus 165 l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l-~~---~~~~L~~L~l~~n~l~~-lp-~ 232 (454)
T 1jl5_A 165 LKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKL-PD---LPLSLESIVAGNNILEE-LP-E 232 (454)
T ss_dssp CSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSC-CC---CCTTCCEEECCSSCCSS-CC-C
T ss_pred Ccc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcC-CC---CcCcccEEECcCCcCCc-cc-c
Confidence 653 2221 2466677776666654 23 456666677777766665531 11 12466666666666552 33 3
Q ss_pred cCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCc---------
Q 037302 231 IGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPP--------- 301 (408)
Q Consensus 231 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------- 301 (408)
+..+++|++|++++|.+.+. +. ..++|+.|++++|.+... +. .+++|++|++++|.+++....
T Consensus 233 ~~~l~~L~~L~l~~N~l~~l-~~---~~~~L~~L~l~~N~l~~l-~~---~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l 304 (454)
T 1jl5_A 233 LQNLPFLTTIYADNNLLKTL-PD---LPPSLEALNVRDNYLTDL-PE---LPQSLTFLDVSENIFSGLSELPPNLYYLNA 304 (454)
T ss_dssp CTTCTTCCEEECCSSCCSSC-CS---CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSEESCCCTTCCEEEC
T ss_pred cCCCCCCCEEECCCCcCCcc-cc---cccccCEEECCCCccccc-Cc---ccCcCCEEECcCCccCcccCcCCcCCEEEC
Confidence 55666666666666665532 11 125566666666655432 11 124555555555555431100
Q ss_pred ------CCcCC-CCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCC--cCC
Q 037302 302 ------ELMNC-SQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSG--VVP 372 (408)
Q Consensus 302 ------~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~--~~~ 372 (408)
.+... ++|++|++++|++.+ .+.. +++|++|++++|+++ .+|. .+++|+.|++++|++.+ ..|
T Consensus 305 ~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip 376 (454)
T 1jl5_A 305 SSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIP 376 (454)
T ss_dssp CSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCC
T ss_pred cCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCCh
Confidence 01111 355555555555543 2211 355666666666555 3333 34556666666666655 334
Q ss_pred ccc----------------cCCCeEEccCCccCC--CCCCCcCCC
Q 037302 373 ASV----------------RIIPKLIVSENNLEL--ENSTSSENA 399 (408)
Q Consensus 373 ~~~----------------~~l~~l~l~~n~~~~--~~~~~~~~~ 399 (408)
..+ .++++|++++|++++ .+|.++.++
T Consensus 377 ~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~~L 421 (454)
T 1jl5_A 377 ESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVEDL 421 (454)
T ss_dssp TTCCEEECCC-----------------------------------
T ss_pred HHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhhHhhe
Confidence 433 234456666666665 555555444
No 39
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.98 E-value=1.7e-30 Score=243.78 Aligned_cols=324 Identities=23% Similarity=0.221 Sum_probs=254.4
Q ss_pred ccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCceeecCCccccccCCCcC
Q 037302 32 SGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSI 111 (408)
Q Consensus 32 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l 111 (408)
.+..+..+..+++|++|+++++.+++. + .+..+++|++|++++|.+.+. + +..+++|++|++++|.++.. .+
T Consensus 31 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~---~~ 102 (457)
T 3bz5_A 31 QATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL---DV 102 (457)
T ss_dssp CTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC---CC
T ss_pred CcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee---ec
Confidence 334445678899999999999999854 4 688999999999999998854 3 78999999999999998865 28
Q ss_pred CCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCCCCccccCCCCCCE
Q 037302 112 GNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDS 191 (408)
Q Consensus 112 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 191 (408)
..+++|++|++++|.+... + +..+++|++|++++|.++.. .+..+++|+.|++++|...... .+..+++|+.
T Consensus 103 ~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~ 174 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTT 174 (457)
T ss_dssp TTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCE
T ss_pred CCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCE
Confidence 8999999999999998853 2 78899999999999998864 3778999999999999654433 4788999999
Q ss_pred EEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcc
Q 037302 192 LLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNL 271 (408)
Q Consensus 192 L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 271 (408)
|++++|.+.+. + +..++.|+.+++++|.+... .+..+++|+.|++++|.+.+. + +..+++|+.|++++|.+
T Consensus 175 L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l 245 (457)
T 3bz5_A 175 LDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPL 245 (457)
T ss_dssp EECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCC
T ss_pred EECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCcC
Confidence 99999998753 2 77889999999999988765 377889999999999999863 3 77889999999999998
Q ss_pred cccCCccccCCCCCcEEeCCCCccccCCC--------cCCcCCCCCcEEEcCCCccCCcC--------CcccccCCCccE
Q 037302 272 IGSIPPTIGYLTNLTSLNLGYNQLSSSIP--------PELMNCSQLQNLVLSHNTLSGIV--------PPEIGNLTHLRQ 335 (408)
Q Consensus 272 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------~~~~~~~~L~~L~l~~~~~~~~~--------~~~~~~~~~L~~ 335 (408)
.... ...+++|+.|+++++.+..... ..+..+++|+.|++++|...+.. .-.+..+++|++
T Consensus 246 ~~~~---~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~ 322 (457)
T 3bz5_A 246 TELD---VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVY 322 (457)
T ss_dssp SCCC---CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCE
T ss_pred CCcC---HHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCE
Confidence 7654 3455666666555544332111 12456788999999888643221 123566788888
Q ss_pred EEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCCccccCCCeEEccCCccCCC
Q 037302 336 LDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVRIIPKLIVSENNLELE 391 (408)
Q Consensus 336 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~l~l~~n~~~~~ 391 (408)
|++++|++++. + +..+++|+.|++++|+++++ ..+..|+++.|.++|.
T Consensus 323 L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~l-----~~L~~L~l~~n~l~g~ 370 (457)
T 3bz5_A 323 LYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQDF-----SSVGKIPALNNNFEAE 370 (457)
T ss_dssp EECTTCCCSCC-C--CTTCTTCSEEECCSSCCCBC-----TTGGGSSGGGTSEEEE
T ss_pred EECCCCccccc-c--cccCCcCcEEECCCCCCCCc-----cccccccccCCcEEec
Confidence 88888888864 3 77888888888888888863 4566777888888765
No 40
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.4e-29 Score=228.60 Aligned_cols=291 Identities=24% Similarity=0.301 Sum_probs=181.3
Q ss_pred CCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCceeecCCccccccCCCcCCCCCCCCEEEcC
Q 037302 44 KLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLS 123 (408)
Q Consensus 44 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~ 123 (408)
+++.++++++.++ ..+..+ .+.+++|+++++.+....+..|.++++|++|++++|.+..+.+..+..+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 5666776666555 233322 2466666776666665555556666667777776666665656666666666666666
Q ss_pred CCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCccccccc
Q 037302 124 LNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPI 203 (408)
Q Consensus 124 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 203 (408)
+|.+.. .+..+. ++|++|++++|.+.......+..+++|+.|++++|.+.. .+..
T Consensus 109 ~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----------------------~~~~ 163 (330)
T 1xku_A 109 KNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS----------------------SGIE 163 (330)
T ss_dssp SSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG----------------------GGBC
T ss_pred CCcCCc-cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCc----------------------cCcC
Confidence 666552 222222 456666666666554444455555666666665555432 0022
Q ss_pred CcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCC
Q 037302 204 PSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLT 283 (408)
Q Consensus 204 ~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 283 (408)
+..+..+++|+.++++++.+... +..+ .++|++|++++|.+.+..+..+..+++|+.|++++|.+....+..+..++
T Consensus 164 ~~~~~~l~~L~~L~l~~n~l~~l-~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 240 (330)
T 1xku_A 164 NGAFQGMKKLSYIRIADTNITTI-PQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 240 (330)
T ss_dssp TTGGGGCTTCCEEECCSSCCCSC-CSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGST
T ss_pred hhhccCCCCcCEEECCCCccccC-Cccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCC
Confidence 23334444444455544444332 1111 15677777777777666666677777788888877777665555677778
Q ss_pred CCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCccccc------CCCccEEEcCCccccc--cCCcCCCCCC
Q 037302 284 NLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGN------LTHLRQLDLSHNFING--TIPSQLGYIP 355 (408)
Q Consensus 284 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~------~~~L~~L~l~~~~~~~--~~~~~~~~~~ 355 (408)
+|++|++++|.++ ..+..+..+++|++|++++|+++++....|.. .+.++.+++++|++.. ..|..+..++
T Consensus 241 ~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~ 319 (330)
T 1xku_A 241 HLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVY 319 (330)
T ss_dssp TCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCC
T ss_pred CCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCcccccccc
Confidence 8888888888877 55666777888888888888877666555543 3678899999998764 4567788888
Q ss_pred CccEEeCCCCc
Q 037302 356 NISAVDLSKNN 366 (408)
Q Consensus 356 ~L~~L~l~~~~ 366 (408)
+++.+++++|+
T Consensus 320 ~l~~l~L~~N~ 330 (330)
T 1xku_A 320 VRAAVQLGNYK 330 (330)
T ss_dssp CGGGEEC----
T ss_pred ceeEEEecccC
Confidence 99999998875
No 41
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=2.3e-29 Score=227.19 Aligned_cols=265 Identities=25% Similarity=0.334 Sum_probs=185.3
Q ss_pred CCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEec
Q 037302 116 NLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLN 195 (408)
Q Consensus 116 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 195 (408)
++++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+... +..+ .++|++|+++
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l-~~~~--~~~L~~L~l~ 129 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL-PEKM--PKTLQELRVH 129 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBC-CSSC--CTTCCEEECC
T ss_pred CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCcc-Chhh--cccccEEECC
Confidence 344444444444433333344444444444444444433344444445555555555444321 1111 2567777777
Q ss_pred CcccccccCcccccccccCeEEccCCcCCC--CCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccc
Q 037302 196 RNSLTGPIPSTIGYLNLGGKLDLSHNRLDS--PIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIG 273 (408)
Q Consensus 196 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 273 (408)
+|.+.+.....+..++.|+.++++++.+.. ..+..+..+++|++|++++|.+... +..+ .++|++|++++|.+..
T Consensus 130 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~~--~~~L~~L~l~~n~l~~ 206 (330)
T 1xku_A 130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI-PQGL--PPSLTELHLDGNKITK 206 (330)
T ss_dssp SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC-CSSC--CTTCSEEECTTSCCCE
T ss_pred CCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC-Cccc--cccCCEEECCCCcCCc
Confidence 776665555566777888888888877653 4556788899999999999988743 3332 2899999999999987
Q ss_pred cCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCC
Q 037302 274 SIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGY 353 (408)
Q Consensus 274 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 353 (408)
..+..+..+++|++|++++|.++...+..+..+++|++|++++|++. ..+..+..+++|++|++++|++++..+..|..
T Consensus 207 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~ 285 (330)
T 1xku_A 207 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCP 285 (330)
T ss_dssp ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSC
T ss_pred cCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCC
Confidence 77788999999999999999999877778899999999999999998 56677889999999999999999777766643
Q ss_pred ------CCCccEEeCCCCccCC--cCCcccc---CCCeEEccCCc
Q 037302 354 ------IPNISAVDLSKNNLSG--VVPASVR---IIPKLIVSENN 387 (408)
Q Consensus 354 ------~~~L~~L~l~~~~l~~--~~~~~~~---~l~~l~l~~n~ 387 (408)
.++++.+++++|++.. +.|..|. .++.+++++|+
T Consensus 286 ~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 286 PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 3789999999999975 4455555 45599999885
No 42
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=3.5e-34 Score=270.98 Aligned_cols=376 Identities=21% Similarity=0.175 Sum_probs=269.6
Q ss_pred CCCcEEEcCCCccccccch-hhccCCCCcEEeCCCCcCCCC----CcccccCCCCCcEEeCCCceecccCcccc-cCCC-
Q 037302 19 PNLESIIIPYTLLSGRIPS-EIGALSKLEELALPYNSLTGT----IPAEIGSLRNLVELDLSNNILNGSIPLEF-GNLK- 91 (408)
Q Consensus 19 ~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~l~- 91 (408)
++|++|+++++.+...... .+..+++|++|++++|.++.. .+..+..+++|++|++++|.+.+..+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 5788999988887754433 378889999999999987632 34556778999999999988765433333 3344
Q ss_pred ---CCceeecCCccccc----cCCCcCCCCCCCCEEEcCCCeecccCccccc-----CCCCCceEeccCCcccCcC----
Q 037302 92 ---DLDALRLRGNKLDG----LIPSSIGNLTNLTHLDLSLNQLSGRLPQEVG-----NLKNLLSLFLDNNNLTGPI---- 155 (408)
Q Consensus 92 ---~L~~L~l~~~~i~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~~---- 155 (408)
+|++|++++|.+.. ..+..+..+++|++|++++|.+....+..+. ..++|++|++++|.++...
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 69999999998774 3366788889999999999887644333332 3567999999998877533
Q ss_pred chhhccCCCCCEEEcCCCcCCCCCCcccc-----CCCCCCEEEecCcccccc----cCcccccccccCeEEccCCcCCCC
Q 037302 156 PSTLYHLNQLSNLYLAYNNLVGPLPKEVG-----NMKNLDSLLLNRNSLTGP----IPSTIGYLNLGGKLDLSHNRLDSP 226 (408)
Q Consensus 156 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~ 226 (408)
...+..+++|++|++++|.+.......+. ..++|++|++++|.+.+. .+..+..++.|+++++++|.+...
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 44556678999999998886533222222 356899999999887653 345566788999999998876542
Q ss_pred C-----CcccCCCCCccEEEccCCccccc----CCccccCCCCCCEEeCCCCcccccCCccc-----cCCCCCcEEeCCC
Q 037302 227 I-----PPTIGNLTNLTSLDLSSNQLSGL----LPREVGNLKYLDSLSLDGNNLIGSIPPTI-----GYLTNLTSLNLGY 292 (408)
Q Consensus 227 ~-----~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~ 292 (408)
. +..+..+++|++|++++|.+++. .+..+..+++|++|++++|.+.+.....+ ...++|++|++++
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 322 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence 1 12223578899999999988753 34456668899999999988754322222 2336899999999
Q ss_pred CccccCC----CcCCcCCCCCcEEEcCCCccCCcCCccccc-----CCCccEEEcCCccccc----cCCcCCCCCCCccE
Q 037302 293 NQLSSSI----PPELMNCSQLQNLVLSHNTLSGIVPPEIGN-----LTHLRQLDLSHNFING----TIPSQLGYIPNISA 359 (408)
Q Consensus 293 ~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~ 359 (408)
|.++... +..+..+++|++|++++|.+.+.....+.. .++|++|++++|.+++ .++..+..+++|+.
T Consensus 323 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~ 402 (461)
T 1z7x_W 323 CSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRE 402 (461)
T ss_dssp SCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCE
T ss_pred CCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccE
Confidence 9887542 344556789999999999876544433332 6799999999999886 56777778899999
Q ss_pred EeCCCCccCCc--------CCccccCCCeEEccCCccCCCCCC
Q 037302 360 VDLSKNNLSGV--------VPASVRIIPKLIVSENNLELENST 394 (408)
Q Consensus 360 L~l~~~~l~~~--------~~~~~~~l~~l~l~~n~~~~~~~~ 394 (408)
|++++|++.+. .|...+.++.|.+.++......++
T Consensus 403 L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~ 445 (461)
T 1z7x_W 403 LDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMED 445 (461)
T ss_dssp EECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHH
T ss_pred EECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHH
Confidence 99999998765 344455788888888887654443
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=3.4e-29 Score=226.18 Aligned_cols=288 Identities=22% Similarity=0.278 Sum_probs=203.0
Q ss_pred CCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCceeecCCccccccCCCcCCCCCCCCEEEcC
Q 037302 44 KLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLS 123 (408)
Q Consensus 44 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~ 123 (408)
+++.++++++.++ ..|..+ .++|++|++++|.+....+..|.++++|++|++++|.++.+.+..+.++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 5666666666655 333333 2466677777766665555566667777777777776666666666667777777777
Q ss_pred CCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCC--CCCccccCCCCCCEEEecCccccc
Q 037302 124 LNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVG--PLPKEVGNMKNLDSLLLNRNSLTG 201 (408)
Q Consensus 124 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~ 201 (408)
+|.+.. .+..+. ++|++|++++|.+.......+..+++|+.|++++|.+.. ..+..+..+ +|+.|++++|.+.+
T Consensus 111 ~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCcCCc-cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 766652 232222 567777777777665555556667777777777776642 334445555 77777777777664
Q ss_pred ccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccC
Q 037302 202 PIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGY 281 (408)
Q Consensus 202 ~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 281 (408)
. +..+ .+.|+.+++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+. ..+..+..
T Consensus 187 l-~~~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 262 (332)
T 2ft3_A 187 I-PKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD 262 (332)
T ss_dssp C-CSSS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGG
T ss_pred c-Cccc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhc
Confidence 3 2222 267888888888888777778888899999999999888777777888899999999999887 55566888
Q ss_pred CCCCcEEeCCCCccccCCCcCCcC------CCCCcEEEcCCCccC--CcCCcccccCCCccEEEcCCcc
Q 037302 282 LTNLTSLNLGYNQLSSSIPPELMN------CSQLQNLVLSHNTLS--GIVPPEIGNLTHLRQLDLSHNF 342 (408)
Q Consensus 282 ~~~L~~L~l~~~~~~~~~~~~~~~------~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~ 342 (408)
+++|++|++++|.++......+.. .+.|+.|++++|++. +..+.+|..+++|+.+++++|.
T Consensus 263 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 263 LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 999999999999998766665554 467999999999876 5677788899999999999884
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=3.8e-29 Score=225.83 Aligned_cols=287 Identities=21% Similarity=0.284 Sum_probs=163.5
Q ss_pred CCcEEeCCCceecccCcccccCCCCCceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEecc
Q 037302 68 NLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLD 147 (408)
Q Consensus 68 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 147 (408)
+++.++++++.+. ..|..+ .++|++|+++++.+..+.+..+.++++|++|++++|.+....+..+..+++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 6788888888776 445444 2678888888888877777778888888888888888876667778888888888888
Q ss_pred CCcccCcCchhhccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCccccc--ccCcccccccccCeEEccCCcCCC
Q 037302 148 NNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTG--PIPSTIGYLNLGGKLDLSHNRLDS 225 (408)
Q Consensus 148 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~l~l~~~~~~~ 225 (408)
+|.+.. .+..+. ++|++|++++|.+....+..+..+++|+.|++++|.+.. ..+..+..+ .|+.++++++.+..
T Consensus 111 ~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCcCCc-cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 887763 333222 678888888777766555567777777777777776642 233334433 55555555555543
Q ss_pred CCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcC
Q 037302 226 PIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMN 305 (408)
Q Consensus 226 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 305 (408)
. +..+. ++|++|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|++++|.++ ..+..+..
T Consensus 187 l-~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 262 (332)
T 2ft3_A 187 I-PKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD 262 (332)
T ss_dssp C-CSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGG
T ss_pred c-Ccccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhc
Confidence 2 21111 34555555555544443344444455555555555444333334444445555555554444 33333444
Q ss_pred CCCCcEEEcCCCccCCcCCccccc------CCCccEEEcCCcccc--ccCCcCCCCCCCccEEeCCCC
Q 037302 306 CSQLQNLVLSHNTLSGIVPPEIGN------LTHLRQLDLSHNFIN--GTIPSQLGYIPNISAVDLSKN 365 (408)
Q Consensus 306 ~~~L~~L~l~~~~~~~~~~~~~~~------~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~ 365 (408)
+++|++|++++|++++.....|.. .+.|+.+++++|++. +..+.++..+++|+.+++++|
T Consensus 263 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 263 LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp CTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred CccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 444444544444444333333322 133444444444443 233334444444444444443
No 45
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.97 E-value=7.6e-28 Score=225.60 Aligned_cols=334 Identities=27% Similarity=0.351 Sum_probs=210.4
Q ss_pred CCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCceeec
Q 037302 19 PNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRL 98 (408)
Q Consensus 19 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 98 (408)
++|++|+++++.+.+ +|. .+++|++|++++|.++.. +. ..++|++|++++|.+.+ .| .+.++++|++|++
T Consensus 91 ~~L~~L~l~~n~l~~-lp~---~~~~L~~L~l~~n~l~~l-~~---~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l 160 (454)
T 1jl5_A 91 PHLESLVASCNSLTE-LPE---LPQSLKSLLVDNNNLKAL-SD---LPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDV 160 (454)
T ss_dssp TTCSEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSCC-CS---CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred CCCCEEEccCCcCCc-ccc---ccCCCcEEECCCCccCcc-cC---CCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEEC
Confidence 577888888777775 443 236788888888877632 11 12688888888888874 55 4788888888888
Q ss_pred CCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCC
Q 037302 99 RGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGP 178 (408)
Q Consensus 99 ~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 178 (408)
++|.++.+ +.. .++|++|++++|.+.. .+ .+..+++|++|++++|.++. .+. ..++|++|++++|.+. .
T Consensus 161 ~~N~l~~l-p~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~n~l~-~ 229 (454)
T 1jl5_A 161 DNNSLKKL-PDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPD---LPLSLESIVAGNNILE-E 229 (454)
T ss_dssp CSSCCSCC-CCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCS-S
T ss_pred CCCcCccc-CCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCC---CcCcccEEECcCCcCC-c
Confidence 88887653 222 3588888888888874 33 57788888888888888764 222 1357888888888776 3
Q ss_pred CCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCC
Q 037302 179 LPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNL 258 (408)
Q Consensus 179 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 258 (408)
.+ .+..+++|+.|++++|.+.+. +. .++.|+.+++++|.+... +.. +++|+.|++++|.+.+... ..
T Consensus 230 lp-~~~~l~~L~~L~l~~N~l~~l-~~---~~~~L~~L~l~~N~l~~l-~~~---~~~L~~L~ls~N~l~~l~~----~~ 296 (454)
T 1jl5_A 230 LP-ELQNLPFLTTIYADNNLLKTL-PD---LPPSLEALNVRDNYLTDL-PEL---PQSLTFLDVSENIFSGLSE----LP 296 (454)
T ss_dssp CC-CCTTCTTCCEEECCSSCCSSC-CS---CCTTCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCSEESC----CC
T ss_pred cc-ccCCCCCCCEEECCCCcCCcc-cc---cccccCEEECCCCccccc-Ccc---cCcCCEEECcCCccCcccC----cC
Confidence 44 377888899999888887642 22 347888888888887652 322 3788999999888764211 12
Q ss_pred CCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEc
Q 037302 259 KYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDL 338 (408)
Q Consensus 259 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 338 (408)
++|+.|++++|.+.... ...++|++|++++|.+++ .+.. +++|++|++++|.++. .+. .+++|++|++
T Consensus 297 ~~L~~L~l~~N~l~~i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L 364 (454)
T 1jl5_A 297 PNLYYLNASSNEIRSLC----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHV 364 (454)
T ss_dssp TTCCEEECCSSCCSEEC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEEC
T ss_pred CcCCEEECcCCcCCccc----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEEC
Confidence 68999999998876421 123589999999999985 3332 5899999999999984 343 4689999999
Q ss_pred CCccccc--cCCcCCCCC-------------CCccEEeCCCCccCC--cCCccccCCCeEEccCCccCCCCCCCcCCCCC
Q 037302 339 SHNFING--TIPSQLGYI-------------PNISAVDLSKNNLSG--VVPASVRIIPKLIVSENNLELENSTSSENAPP 401 (408)
Q Consensus 339 ~~~~~~~--~~~~~~~~~-------------~~L~~L~l~~~~l~~--~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~ 401 (408)
++|++++ .+|..+..+ ++|+.|++++|++++ .+|. .++.+.+.+|.+.+.+|-..+....
T Consensus 365 ~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~---sl~~L~~~~~~~~~~~~~~~~~~~~ 441 (454)
T 1jl5_A 365 EYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPE---SVEDLRMNSERVVDPYEFAHETTDK 441 (454)
T ss_dssp CSSCCSSCCCCCTTCCEEECCC----------------------------------------------------------
T ss_pred CCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchh---hHhheeCcCcccCCccccCHHHhhh
Confidence 9999998 677777766 889999999999997 4454 4567788999998888776655443
No 46
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=1.4e-32 Score=260.08 Aligned_cols=366 Identities=20% Similarity=0.152 Sum_probs=274.2
Q ss_pred Ccccccccc-cCCCCCCcEEEcCCCccccc----cchhhccCCCCcEEeCCCCcCCCCCcccc-cCCC----CCcEEeCC
Q 037302 6 NAAELSQLN-FTCFPNLESIIIPYTLLSGR----IPSEIGALSKLEELALPYNSLTGTIPAEI-GSLR----NLVELDLS 75 (408)
Q Consensus 6 ~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~----~L~~L~l~ 75 (408)
+++...... |..+++|++|++++|.+.+. ++..+..+++|++|++++|.+.+.....+ ..++ +|++|+++
T Consensus 14 ~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~ 93 (461)
T 1z7x_W 14 ELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQ 93 (461)
T ss_dssp CCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECT
T ss_pred ccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEcc
Confidence 344444333 78899999999999998743 45667889999999999998865333333 3344 79999999
Q ss_pred Cceecc----cCcccccCCCCCceeecCCccccccCCCc-----CCCCCCCCEEEcCCCeecccC----cccccCCCCCc
Q 037302 76 NNILNG----SIPLEFGNLKDLDALRLRGNKLDGLIPSS-----IGNLTNLTHLDLSLNQLSGRL----PQEVGNLKNLL 142 (408)
Q Consensus 76 ~~~~~~----~~~~~~~~l~~L~~L~l~~~~i~~~~~~~-----l~~l~~L~~L~l~~~~~~~~~----~~~~~~l~~L~ 142 (408)
+|.+.+ ..+..+..+++|++|++++|.+....+.. ....++|++|++++|.+.... +..+..+++|+
T Consensus 94 ~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 173 (461)
T 1z7x_W 94 NCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFK 173 (461)
T ss_dssp TSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCC
T ss_pred CCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCC
Confidence 999874 45778899999999999999876433322 233578999999999887543 44556789999
Q ss_pred eEeccCCcccCcCchhhc-----cCCCCCEEEcCCCcCCCC----CCccccCCCCCCEEEecCccccccc-----Ccccc
Q 037302 143 SLFLDNNNLTGPIPSTLY-----HLNQLSNLYLAYNNLVGP----LPKEVGNMKNLDSLLLNRNSLTGPI-----PSTIG 208 (408)
Q Consensus 143 ~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~-----~~~~~ 208 (408)
+|++++|.+.......+. ..++|++|++++|.+... ++..+..+++|++|++++|.+.+.. ...+.
T Consensus 174 ~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~ 253 (461)
T 1z7x_W 174 ELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLH 253 (461)
T ss_dssp EEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTS
T ss_pred EEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhc
Confidence 999999987754444333 256999999999988753 3456677899999999999876432 22223
Q ss_pred cccccCeEEccCCcCCCC----CCcccCCCCCccEEEccCCcccccCCcccc-----CCCCCCEEeCCCCccccc----C
Q 037302 209 YLNLGGKLDLSHNRLDSP----IPPTIGNLTNLTSLDLSSNQLSGLLPREVG-----NLKYLDSLSLDGNNLIGS----I 275 (408)
Q Consensus 209 ~~~~L~~l~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~----~ 275 (408)
.++.|++|++++|.++.. .+..+..+++|++|++++|.+.+.....+. ..++|++|++++|.+... .
T Consensus 254 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 333 (461)
T 1z7x_W 254 PSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHF 333 (461)
T ss_dssp TTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHH
Confidence 578999999999988753 344566689999999999988754443333 236999999999998754 3
Q ss_pred CccccCCCCCcEEeCCCCccccCCCcCCc-----CCCCCcEEEcCCCccCC----cCCcccccCCCccEEEcCCcccccc
Q 037302 276 PPTIGYLTNLTSLNLGYNQLSSSIPPELM-----NCSQLQNLVLSHNTLSG----IVPPEIGNLTHLRQLDLSHNFINGT 346 (408)
Q Consensus 276 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~ 346 (408)
+..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++ ..+..+..+++|++|++++|++++.
T Consensus 334 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 334 SSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp HHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred HHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 44566789999999999998765443332 26899999999999875 4566777899999999999999865
Q ss_pred CCcC----CC-CCCCccEEeCCCCccCCcC
Q 037302 347 IPSQ----LG-YIPNISAVDLSKNNLSGVV 371 (408)
Q Consensus 347 ~~~~----~~-~~~~L~~L~l~~~~l~~~~ 371 (408)
.... +. ...+|+.|.+.++.+....
T Consensus 414 ~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~ 443 (461)
T 1z7x_W 414 GILQLVESVRQPGCLLEQLVLYDIYWSEEM 443 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTCCCCHHH
T ss_pred HHHHHHHHhccCCcchhheeecccccCHHH
Confidence 3222 21 2457999999888776543
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=1.1e-28 Score=220.58 Aligned_cols=248 Identities=31% Similarity=0.496 Sum_probs=144.6
Q ss_pred CceEeccCCcccC--cCchhhccCCCCCEEEcCC-CcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEE
Q 037302 141 LLSLFLDNNNLTG--PIPSTLYHLNQLSNLYLAY-NNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLD 217 (408)
Q Consensus 141 L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~ 217 (408)
++.|+++++.+.+ ..+..+..+++|++|++++ +.+....+..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 52 l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 131 (313)
T 1ogq_A 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131 (313)
T ss_dssp EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE
T ss_pred EEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEe
Confidence 4444444444433 3334444444444444442 333333444444455555555555544444444445555555555
Q ss_pred ccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCC-CCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccc
Q 037302 218 LSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLK-YLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLS 296 (408)
Q Consensus 218 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 296 (408)
+++|.+....+..+..+++|++|++++|.+.+..+..+..++ +|+.|++++|.+....+..+..++ |++|++++|.++
T Consensus 132 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~ 210 (313)
T 1ogq_A 132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLE 210 (313)
T ss_dssp CCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEE
T ss_pred CCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCccc
Confidence 555555444455555556666666666665545555555555 666666666666555555555554 777777777766
Q ss_pred cCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCCcc--
Q 037302 297 SSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPAS-- 374 (408)
Q Consensus 297 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~-- 374 (408)
+..+..+..+++|+.|++++|.+.+..+. +..+++|++|++++|++++.+|..+..+++|+.|++++|++.+.+|..
T Consensus 211 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~ 289 (313)
T 1ogq_A 211 GDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGN 289 (313)
T ss_dssp ECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTT
T ss_pred CcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCcc
Confidence 66666666677777777777776643333 566677777777777777667777777777777777777777666643
Q ss_pred ccCCCeEEccCCc-cCC
Q 037302 375 VRIIPKLIVSENN-LEL 390 (408)
Q Consensus 375 ~~~l~~l~l~~n~-~~~ 390 (408)
+.+++.+++++|+ +.|
T Consensus 290 l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 290 LQRFDVSAYANNKCLCG 306 (313)
T ss_dssp GGGSCGGGTCSSSEEES
T ss_pred ccccChHHhcCCCCccC
Confidence 3455677777777 444
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=2.1e-28 Score=218.72 Aligned_cols=252 Identities=30% Similarity=0.486 Sum_probs=226.5
Q ss_pred CCCCEEEcCCCeecc--cCcccccCCCCCceEeccC-CcccCcCchhhccCCCCCEEEcCCCcCCCCCCccccCCCCCCE
Q 037302 115 TNLTHLDLSLNQLSG--RLPQEVGNLKNLLSLFLDN-NNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDS 191 (408)
Q Consensus 115 ~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 191 (408)
.++++|+++++.+.+ ..+..+..+++|++|++++ +.+....+..+..+++|++|++++|.+....+..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 579999999999987 6788899999999999995 8888788888999999999999999988777888999999999
Q ss_pred EEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCC-CccEEEccCCcccccCCccccCCCCCCEEeCCCCc
Q 037302 192 LLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLT-NLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNN 270 (408)
Q Consensus 192 L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 270 (408)
|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..++ +|++|++++|.+.+..+..+..++ |+.|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 99999999878888899999999999999998877788888887 999999999999877888888776 9999999999
Q ss_pred ccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcC
Q 037302 271 LIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQ 350 (408)
Q Consensus 271 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 350 (408)
+....+..+..+++|++|++++|.++...+. +..+++|++|++++|.+.+..+..+..+++|++|++++|++++.+|..
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 9877888889999999999999999855444 778899999999999998888999999999999999999999888876
Q ss_pred CCCCCCccEEeCCCCc-cCC
Q 037302 351 LGYIPNISAVDLSKNN-LSG 369 (408)
Q Consensus 351 ~~~~~~L~~L~l~~~~-l~~ 369 (408)
..+++|+.+++++|+ +.+
T Consensus 288 -~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 288 -GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp -TTGGGSCGGGTCSSSEEES
T ss_pred -ccccccChHHhcCCCCccC
Confidence 788999999999998 554
No 49
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=2.7e-27 Score=211.26 Aligned_cols=283 Identities=23% Similarity=0.282 Sum_probs=199.6
Q ss_pred ceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcC--chhhccCCCCCEEEcC
Q 037302 94 DALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPI--PSTLYHLNQLSNLYLA 171 (408)
Q Consensus 94 ~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~ 171 (408)
+.++.+++.++.++. .+ .++|++|+++++.+.......+..+++|++|++++|.+.... +..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~~ip~-~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLTSVPT-GI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCSSCCS-CC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcccCCC-CC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 456666666654432 22 256777777777776444445667777777777777655221 3344456666666666
Q ss_pred CCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCC-cccCCCCCccEEEccCCccccc
Q 037302 172 YNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIP-PTIGNLTNLTSLDLSSNQLSGL 250 (408)
Q Consensus 172 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~ 250 (408)
+|.+.. .+..+..+++|++|++++| .+..... ..+..+++|++|++++|.+...
T Consensus 87 ~n~i~~-l~~~~~~l~~L~~L~l~~n------------------------~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 141 (306)
T 2z66_A 87 FNGVIT-MSSNFLGLEQLEHLDFQHS------------------------NLKQMSEFSVFLSLRNLIYLDISHTHTRVA 141 (306)
T ss_dssp SCSEEE-EEEEEETCTTCCEEECTTS------------------------EEESSTTTTTTTTCTTCCEEECTTSCCEEC
T ss_pred CCcccc-ChhhcCCCCCCCEEECCCC------------------------cccccccchhhhhccCCCEEECCCCcCCcc
Confidence 665442 2223444555555555544 4433322 3456677788888888877766
Q ss_pred CCccccCCCCCCEEeCCCCcccc-cCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCccccc
Q 037302 251 LPREVGNLKYLDSLSLDGNNLIG-SIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGN 329 (408)
Q Consensus 251 ~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 329 (408)
.+..+..+++|++|++++|.+.. ..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++.....+..
T Consensus 142 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 221 (306)
T 2z66_A 142 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 221 (306)
T ss_dssp STTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTT
T ss_pred chhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccC
Confidence 66677778888888888888765 35667788899999999999998777788888999999999999998777778888
Q ss_pred CCCccEEEcCCccccccCCcCCCCCC-CccEEeCCCCccCCcCC-----ccccCCCeEEccCCccCCCCCCCcCCCCCCC
Q 037302 330 LTHLRQLDLSHNFINGTIPSQLGYIP-NISAVDLSKNNLSGVVP-----ASVRIIPKLIVSENNLELENSTSSENAPPPQ 403 (408)
Q Consensus 330 ~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~l~~~~~-----~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~ 403 (408)
+++|+.|++++|++++..+..+..++ +|+.|++++|++.+..+ +.+...+.+....+.+.++.|..+.+.+-++
T Consensus 222 l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~~~~~ 301 (306)
T 2z66_A 222 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLS 301 (306)
T ss_dssp CTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTTCBGGG
T ss_pred cccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCCceeee
Confidence 99999999999999988888888884 89999999999986532 2334455667778888899999888766544
Q ss_pred C
Q 037302 404 A 404 (408)
Q Consensus 404 ~ 404 (408)
.
T Consensus 302 ~ 302 (306)
T 2z66_A 302 L 302 (306)
T ss_dssp C
T ss_pred e
Confidence 3
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=1.7e-30 Score=253.41 Aligned_cols=387 Identities=14% Similarity=0.114 Sum_probs=206.5
Q ss_pred ccccccccCCCCCCcEEEcCCCccc---cccc------------hhhccCCCCcEEeCCCCcCCCCCcccccC-CCC-Cc
Q 037302 8 AELSQLNFTCFPNLESIIIPYTLLS---GRIP------------SEIGALSKLEELALPYNSLTGTIPAEIGS-LRN-LV 70 (408)
Q Consensus 8 ~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~------------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~-L~ 70 (408)
.......+.++|+|+.|+++++... +..| .....+++|++|+++++.+++.....+.. +++ |+
T Consensus 62 ~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~ 141 (592)
T 3ogk_B 62 TATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLE 141 (592)
T ss_dssp GSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCC
T ss_pred ccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCc
Confidence 3344556677777888888665321 1111 11236777888888777665443344433 333 77
Q ss_pred EEeCCCce-ecc-cCcccccCCCCCceeecCCccccccCC----CcCCCCCCCCEEEcCCCeecc----cCcccccCCCC
Q 037302 71 ELDLSNNI-LNG-SIPLEFGNLKDLDALRLRGNKLDGLIP----SSIGNLTNLTHLDLSLNQLSG----RLPQEVGNLKN 140 (408)
Q Consensus 71 ~L~l~~~~-~~~-~~~~~~~~l~~L~~L~l~~~~i~~~~~----~~l~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~ 140 (408)
+|++++|. +.. ..+.....+++|++|++++|.+..... .....+++|++|+++++.+.. ..+..+..+++
T Consensus 142 ~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~ 221 (592)
T 3ogk_B 142 TLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRS 221 (592)
T ss_dssp EEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTT
T ss_pred EEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCC
Confidence 77777765 221 122223466777777777776543321 123456777777777776642 22223345677
Q ss_pred CceEeccCCcccCcCchhhccCCCCCEEEcCCCcCC---CCCCccccCCCCCCEEEecCcccccccCcccccccccCeEE
Q 037302 141 LLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLV---GPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLD 217 (408)
Q Consensus 141 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~ 217 (408)
|++|+++++.+.. .+..+..+++|+++.++..... ......+..+++|+.+.+.++.. ...+..+..+++|++|+
T Consensus 222 L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~ 299 (592)
T 3ogk_B 222 LVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLD 299 (592)
T ss_dssp CCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEE
T ss_pred CcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEe
Confidence 7777777776653 4455666777777776542211 11222344455555555544321 12333444455555555
Q ss_pred ccCCcCCCCCC-cccCCCC------------------------CccEEEccC----------C-cccccCC-ccccCCCC
Q 037302 218 LSHNRLDSPIP-PTIGNLT------------------------NLTSLDLSS----------N-QLSGLLP-REVGNLKY 260 (408)
Q Consensus 218 l~~~~~~~~~~-~~l~~~~------------------------~L~~L~l~~----------~-~~~~~~~-~~~~~~~~ 260 (408)
+++|.+..... ..+..++ +|++|++++ | .+++... .....+++
T Consensus 300 Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~ 379 (592)
T 3ogk_B 300 LLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQE 379 (592)
T ss_dssp ETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTT
T ss_pred cCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCcc
Confidence 55554321111 1123344 444444442 2 2221111 11223455
Q ss_pred CCEEeCCCCcccccCCcccc-CCCCCcEEeCC----CCccccC-----CCcCCcCCCCCcEEEcCCCc--cCCcCCccc-
Q 037302 261 LDSLSLDGNNLIGSIPPTIG-YLTNLTSLNLG----YNQLSSS-----IPPELMNCSQLQNLVLSHNT--LSGIVPPEI- 327 (408)
Q Consensus 261 L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~----~~~~~~~-----~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~- 327 (408)
|++|++..+.+.+.....+. .+++|++|+++ .+.+++. ....+.++++|++|++++|. +++.....+
T Consensus 380 L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~ 459 (592)
T 3ogk_B 380 LEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIG 459 (592)
T ss_dssp CSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHH
T ss_pred CeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHH
Confidence 55555544444332222222 25666666664 3334321 11124456777777776553 332222223
Q ss_pred ccCCCccEEEcCCcccccc-CCcCCCCCCCccEEeCCCCccCCcCC----ccccCCCeEEccCCccCCCCCCCc
Q 037302 328 GNLTHLRQLDLSHNFINGT-IPSQLGYIPNISAVDLSKNNLSGVVP----ASVRIIPKLIVSENNLELENSTSS 396 (408)
Q Consensus 328 ~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~~~~~----~~~~~l~~l~l~~n~~~~~~~~~~ 396 (408)
..+++|++|++++|++++. .+..+..+++|+.|++++|++.+... ..+.++++|++++|++++.....+
T Consensus 460 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l 533 (592)
T 3ogk_B 460 QYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLM 533 (592)
T ss_dssp HSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGG
T ss_pred HhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHH
Confidence 2478888888888888763 34455778889999999998764422 235678899999999887644433
No 51
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=2.6e-26 Score=202.67 Aligned_cols=236 Identities=24% Similarity=0.204 Sum_probs=160.7
Q ss_pred CCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCc-CCCCCCcccCCCCCccEEE
Q 037302 163 NQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNR-LDSPIPPTIGNLTNLTSLD 241 (408)
Q Consensus 163 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~l~~~~~L~~L~ 241 (408)
+++++|+++++.+....+..+..+++|++|++++|.+.+..+..+..++.|++|+++++. +....+..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 345555555555444333445555555555555555554444555556666666666664 5544455666677777777
Q ss_pred ccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCC
Q 037302 242 LSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSG 321 (408)
Q Consensus 242 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 321 (408)
+++|.+....+..+..+++|++|+++++.+.......+..+++|++|++++|.++...+..+..+++|++|++++|.+.+
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence 77777766556667777777777777777765555567777888888888888776666667778888888888888877
Q ss_pred cCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCC--ccccCCCeEEccCCccCCCCCCCcCC
Q 037302 322 IVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVP--ASVRIIPKLIVSENNLELENSTSSEN 398 (408)
Q Consensus 322 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~l~~l~l~~n~~~~~~~~~~~~ 398 (408)
..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++....+ +....++.+....+.+.+..|+.+.+
T Consensus 192 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~p~~l~g 270 (285)
T 1ozn_A 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAG 270 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEESGGGTT
T ss_pred cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccCCchHhCC
Confidence 777778888888888888888886666667788888888888888875433 12233445667777888888877654
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=9.3e-27 Score=212.05 Aligned_cols=280 Identities=20% Similarity=0.180 Sum_probs=178.5
Q ss_pred CCCCcEEeCCCceecccCcccccCCCCCceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEe
Q 037302 66 LRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLF 145 (408)
Q Consensus 66 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 145 (408)
|+...+.+.+++.+. ..|..+. ++|++|+++++.++.+.+..+.++++|++|++++|.+....+..+..+++|++|+
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 344455666666666 4454433 5788888888888777766788888888888888877766666777788888888
Q ss_pred ccCCcccCcCchhhccCCCCCEEEcCCCcCCCCCC-ccccCCCCCCEEEecCcc-cccccCcccccccccCeEEccCCcC
Q 037302 146 LDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLP-KEVGNMKNLDSLLLNRNS-LTGPIPSTIGYLNLGGKLDLSHNRL 223 (408)
Q Consensus 146 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~l~l~~~~~ 223 (408)
+++|.++......+..+++|++|++++|.+..... ..+..+++|+.|++++|. +....+..+..++.|+.+++++|.+
T Consensus 107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 186 (353)
T 2z80_A 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186 (353)
T ss_dssp CCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence 88887775555557777888888888777764433 356677777777777763 4433344455555555555555555
Q ss_pred CCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCC
Q 037302 224 DSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPEL 303 (408)
Q Consensus 224 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 303 (408)
....+..+..+++|++|++++|.+.......+..+++|+.|++++ |.++......+
T Consensus 187 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~------------------------n~l~~~~~~~l 242 (353)
T 2z80_A 187 QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRD------------------------TDLDTFHFSEL 242 (353)
T ss_dssp CEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEES------------------------CBCTTCCCC--
T ss_pred CccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCC------------------------Ccccccccccc
Confidence 544445555555555555555554422222223344455555544 44443222211
Q ss_pred ---cCCCCCcEEEcCCCccCC----cCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCC
Q 037302 304 ---MNCSQLQNLVLSHNTLSG----IVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVP 372 (408)
Q Consensus 304 ---~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 372 (408)
...+.++.++++++.+.+ ..+..+..+++|++|++++|+++...+..+..+++|+.|++++|++.+..|
T Consensus 243 ~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 243 STGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp ----CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 234566777777766543 234566788899999999998884444446888999999999998886544
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=1.8e-26 Score=206.01 Aligned_cols=282 Identities=24% Similarity=0.244 Sum_probs=189.2
Q ss_pred cEEeCCCceecccCcccccCCCCCceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccC--cccccCCCCCceEecc
Q 037302 70 VELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRL--PQEVGNLKNLLSLFLD 147 (408)
Q Consensus 70 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~ 147 (408)
+.++.+++.+. ..|..+. ++|++|+++++.+..+.+..|.++++|++|++++|.+.... +..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 46777777776 4554443 68999999999998777777899999999999999886332 4566779999999999
Q ss_pred CCcccCcCchhhccCCCCCEEEcCCCcCCCCCC-ccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCC
Q 037302 148 NNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLP-KEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSP 226 (408)
Q Consensus 148 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~ 226 (408)
+|.+. ..+..+..+++|++|++++|.+..... ..+..+++|+.|++++|.+....+..
T Consensus 87 ~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-------------------- 145 (306)
T 2z66_A 87 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI-------------------- 145 (306)
T ss_dssp SCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTT--------------------
T ss_pred CCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhh--------------------
Confidence 99987 455568889999999999998865433 45677777888877777665443333
Q ss_pred CCcccCCCCCccEEEccCCcccc-cCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcC
Q 037302 227 IPPTIGNLTNLTSLDLSSNQLSG-LLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMN 305 (408)
Q Consensus 227 ~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 305 (408)
+..+++|++|++++|.+.+ ..+..+..+++|++|++++|.+....+..+..+++|++|++++|.++...+..+..
T Consensus 146 ----~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 221 (306)
T 2z66_A 146 ----FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 221 (306)
T ss_dssp ----TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTT
T ss_pred ----cccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccC
Confidence 3444555555555555543 24445555666666666666665555555666666666666666666555555666
Q ss_pred CCCCcEEEcCCCccCCcCCcccccCC-CccEEEcCCccccccCC--cCCCCCCCccEEeCCCCccCCcCCccccCCC
Q 037302 306 CSQLQNLVLSHNTLSGIVPPEIGNLT-HLRQLDLSHNFINGTIP--SQLGYIPNISAVDLSKNNLSGVVPASVRIIP 379 (408)
Q Consensus 306 ~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~ 379 (408)
+++|++|++++|++.+..+..+..++ +|++|++++|+++..-. .....+...+.+.+..+.+....|..+.+..
T Consensus 222 l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~~ 298 (306)
T 2z66_A 222 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMP 298 (306)
T ss_dssp CTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTTCB
T ss_pred cccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCCce
Confidence 67777777777776666666666663 67777777776653211 1112233444455556666666666665544
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=2.1e-26 Score=209.71 Aligned_cols=254 Identities=21% Similarity=0.210 Sum_probs=134.0
Q ss_pred CCcEEeCCCceecccCcccccCCCCCceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEecc
Q 037302 68 NLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLD 147 (408)
Q Consensus 68 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 147 (408)
+|++|+++++.+....+..+.++++|++|++++|.++.+.+..|.++++|++|++++|.+....+..+..+++|++|+++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 44444554444443333344445555555555554444444444455555555555554443333334445555555555
Q ss_pred CCcccCcCc-hhhccCCCCCEEEcCCCc-CCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCC
Q 037302 148 NNNLTGPIP-STLYHLNQLSNLYLAYNN-LVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDS 225 (408)
Q Consensus 148 ~~~~~~~~~-~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 225 (408)
+|.+..... ..+..+++|++|++++|. +....+..+..+++|+.|++++|.+.+..+..+..+++|++++++++.+..
T Consensus 133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 212 (353)
T 2z80_A 133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL 212 (353)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT
T ss_pred CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc
Confidence 554443222 234445555555555542 322223344555555555555555544444455555555555555555433
Q ss_pred CCCcccCCCCCccEEEccCCcccccCCccc---cCCCCCCEEeCCCCccccc----CCccccCCCCCcEEeCCCCccccC
Q 037302 226 PIPPTIGNLTNLTSLDLSSNQLSGLLPREV---GNLKYLDSLSLDGNNLIGS----IPPTIGYLTNLTSLNLGYNQLSSS 298 (408)
Q Consensus 226 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~ 298 (408)
.....+..+++|+.|++++|.+.+.....+ ...+.++.+++.++.+.+. .+..+..+++|++|++++|.++..
T Consensus 213 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i 292 (353)
T 2z80_A 213 LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSV 292 (353)
T ss_dssp HHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCC
T ss_pred chhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCcc
Confidence 222222334566666666665553322222 2345566666666655432 344567788888888888888855
Q ss_pred CCcCCcCCCCCcEEEcCCCccCC
Q 037302 299 IPPELMNCSQLQNLVLSHNTLSG 321 (408)
Q Consensus 299 ~~~~~~~~~~L~~L~l~~~~~~~ 321 (408)
....+.++++|++|++++|++.+
T Consensus 293 ~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 293 PDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCC
T ss_pred CHHHHhcCCCCCEEEeeCCCccC
Confidence 44446788888888888888763
No 55
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=8.2e-30 Score=248.62 Aligned_cols=369 Identities=13% Similarity=0.074 Sum_probs=231.6
Q ss_pred ccchhhccCCCCcEEeCCCCcCC---CCCccc------------ccCCCCCcEEeCCCceecccCcccccC-CCC-Ccee
Q 037302 34 RIPSEIGALSKLEELALPYNSLT---GTIPAE------------IGSLRNLVELDLSNNILNGSIPLEFGN-LKD-LDAL 96 (408)
Q Consensus 34 ~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~------------~~~~~~L~~L~l~~~~~~~~~~~~~~~-l~~-L~~L 96 (408)
..+..+.++++|++|+++++... +..+.. +..+++|++|++++|.+.+..+..+.. +++ |++|
T Consensus 64 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L 143 (592)
T 3ogk_B 64 TPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETL 143 (592)
T ss_dssp CHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEE
T ss_pred ChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEE
Confidence 34455788999999999886421 111111 227899999999999887655555554 455 9999
Q ss_pred ecCCcc-cccc-CCCcCCCCCCCCEEEcCCCeecccC----cccccCCCCCceEeccCCcccC----cCchhhccCCCCC
Q 037302 97 RLRGNK-LDGL-IPSSIGNLTNLTHLDLSLNQLSGRL----PQEVGNLKNLLSLFLDNNNLTG----PIPSTLYHLNQLS 166 (408)
Q Consensus 97 ~l~~~~-i~~~-~~~~l~~l~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~----~~~~~~~~~~~L~ 166 (408)
++++|. +... .+.....+++|++|++++|.+.+.. ......+++|++|+++++.+.. .....+..+++|+
T Consensus 144 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~ 223 (592)
T 3ogk_B 144 KLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLV 223 (592)
T ss_dssp EEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCC
T ss_pred ECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCc
Confidence 999886 2211 1122347899999999999886542 2234578999999999988762 2333456799999
Q ss_pred EEEcCCCcCCCCCCccccCCCCCCEEEecCcccc---cccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEcc
Q 037302 167 NLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLT---GPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLS 243 (408)
Q Consensus 167 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~ 243 (408)
.|++++|.+.. .+..+..+++|++|.+...... ......+..+++|+.+.+..... ...+..+..+++|++|+++
T Consensus 224 ~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls 301 (592)
T 3ogk_B 224 SVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLL 301 (592)
T ss_dssp EEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEET
T ss_pred EEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecC
Confidence 99999988764 4567888999999999853322 23345667788999999987532 3455667788999999999
Q ss_pred CCcccccCC-ccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCC-------------------------------
Q 037302 244 SNQLSGLLP-REVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLG------------------------------- 291 (408)
Q Consensus 244 ~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~------------------------------- 291 (408)
+|.+++... ..+..+++|+.|++.++............+++|++|+++
T Consensus 302 ~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~ 381 (592)
T 3ogk_B 302 YALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELE 381 (592)
T ss_dssp TCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCS
T ss_pred CCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCe
Confidence 998654332 334667777777776332111122223445556666665
Q ss_pred -----CCccccCCCcCCcC-CCCCcEEEcC----CCccCCc-----CCcccccCCCccEEEcCCcc--ccccCCcCC-CC
Q 037302 292 -----YNQLSSSIPPELMN-CSQLQNLVLS----HNTLSGI-----VPPEIGNLTHLRQLDLSHNF--INGTIPSQL-GY 353 (408)
Q Consensus 292 -----~~~~~~~~~~~~~~-~~~L~~L~l~----~~~~~~~-----~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~-~~ 353 (408)
.+.+++.....+.. +++|+.|+++ .+.+++. ....+.++++|++|++++|. +++..+..+ ..
T Consensus 382 ~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~ 461 (592)
T 3ogk_B 382 YMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQY 461 (592)
T ss_dssp EEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHS
T ss_pred EEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHh
Confidence 33332222222222 4555555554 2233321 11124456677777776543 443333333 24
Q ss_pred CCCccEEeCCCCccCCcC-C---ccccCCCeEEccCCccCCC-CCCCcCCCCCCCC
Q 037302 354 IPNISAVDLSKNNLSGVV-P---ASVRIIPKLIVSENNLELE-NSTSSENAPPPQA 404 (408)
Q Consensus 354 ~~~L~~L~l~~~~l~~~~-~---~~~~~l~~l~l~~n~~~~~-~~~~~~~~~~~~~ 404 (408)
+++|+.|++++|++.+.. + ....++++|++++|++++. ++.....++.|+.
T Consensus 462 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 517 (592)
T 3ogk_B 462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRY 517 (592)
T ss_dssp CTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCE
T ss_pred CccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCe
Confidence 677888888888876532 2 2345677888888887654 3444445555543
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=5.8e-25 Score=206.16 Aligned_cols=247 Identities=24% Similarity=0.236 Sum_probs=148.3
Q ss_pred CCceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcC
Q 037302 92 DLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLA 171 (408)
Q Consensus 92 ~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 171 (408)
..+.++..+..++.++ ..+ .+++++|++++|.+....+..|..+++|++|++++|.+....+..+.++++|++|+++
T Consensus 44 ~~~~v~c~~~~l~~iP-~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLREVP-DGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCSSCC-SCC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcCcCC-CCC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 3567777777766443 333 2678888888888876666778888888888888888776666777778888888888
Q ss_pred CCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCC-cCCCCCCcccCCCCCccEEEccCCccccc
Q 037302 172 YNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHN-RLDSPIPPTIGNLTNLTSLDLSSNQLSGL 250 (408)
Q Consensus 172 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 250 (408)
+|.+.......+..+++|++|++++|.+.......+..+++|+.|+++++ .+.......+..+++|++|++++|.+...
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 200 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI 200 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc
Confidence 88777655556777777888877777766555555666666666666653 23322333455555555555555555422
Q ss_pred CCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccC
Q 037302 251 LPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNL 330 (408)
Q Consensus 251 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 330 (408)
+ .+..+++|+.|++++|.+....+..+..+++|++|++++|.++...+..+.++++|++|++++|+++......+..+
T Consensus 201 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 278 (440)
T 3zyj_A 201 -P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278 (440)
T ss_dssp -C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred -c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence 1 23444455555555554444444444445555555555555544444444444555555555555444444444444
Q ss_pred CCccEEEcCCccc
Q 037302 331 THLRQLDLSHNFI 343 (408)
Q Consensus 331 ~~L~~L~l~~~~~ 343 (408)
++|+.|++++|++
T Consensus 279 ~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 279 HHLERIHLHHNPW 291 (440)
T ss_dssp TTCCEEECCSSCE
T ss_pred cCCCEEEcCCCCc
Confidence 4555555554443
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=5.7e-25 Score=206.90 Aligned_cols=246 Identities=22% Similarity=0.194 Sum_probs=136.4
Q ss_pred CCceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcC
Q 037302 92 DLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLA 171 (408)
Q Consensus 92 ~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 171 (408)
....++.++..++.++ ..+ .+++++|++++|.+....+..|..+++|++|++++|.+....+..+.++++|++|+++
T Consensus 55 ~~~~v~c~~~~l~~iP-~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVP-QGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCSSCC-SCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcCccC-CCC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 3456677666666443 323 2577888888887776666777777788888887777776666667777777777777
Q ss_pred CCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCC-cCCCCCCcccCCCCCccEEEccCCccccc
Q 037302 172 YNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHN-RLDSPIPPTIGNLTNLTSLDLSSNQLSGL 250 (408)
Q Consensus 172 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 250 (408)
+|.+....+..+..+++|++|++++|.+.......+..++.|+.|+++++ .+.......+..+++|++|++++|.+.+.
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 77766555555666777777777777665444445555556666665553 22222233344455555555555544422
Q ss_pred CCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccC
Q 037302 251 LPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNL 330 (408)
Q Consensus 251 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 330 (408)
..+..+++|+.|++++|.+....+..+..+++|++|++++|.++...+..+..+++|+.|++++|+++......+..+
T Consensus 212 --~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 289 (452)
T 3zyi_A 212 --PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL 289 (452)
T ss_dssp --CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTC
T ss_pred --ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccc
Confidence 123344444444444444443334444444444444444444444444444444444444444444443333344444
Q ss_pred CCccEEEcCCcc
Q 037302 331 THLRQLDLSHNF 342 (408)
Q Consensus 331 ~~L~~L~l~~~~ 342 (408)
++|+.|++++|+
T Consensus 290 ~~L~~L~L~~Np 301 (452)
T 3zyi_A 290 RYLVELHLHHNP 301 (452)
T ss_dssp TTCCEEECCSSC
T ss_pred cCCCEEEccCCC
Confidence 444444444443
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=8.9e-26 Score=199.28 Aligned_cols=256 Identities=21% Similarity=0.183 Sum_probs=146.5
Q ss_pred ceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCC
Q 037302 94 DALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYN 173 (408)
Q Consensus 94 ~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 173 (408)
+.++.++..++.++ .. ..++|++|+++++.+....+..+..+++|++|+++++.++...+..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~ip-~~--~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAVP-VG--IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSCC-TT--CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccCC-cC--CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 56666666665443 22 2467777777777777555566777777777777777766555566666777777777766
Q ss_pred c-CCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCC
Q 037302 174 N-LVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLP 252 (408)
Q Consensus 174 ~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 252 (408)
. +....+..+..+++|++|++++|.+.+..+. .+..+++|++|++++|.+.....
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------------------~~~~l~~L~~L~l~~n~l~~~~~ 146 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPG------------------------LFRGLAALQYLYLQDNALQALPD 146 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT------------------------TTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHh------------------------HhhCCcCCCEEECCCCcccccCH
Confidence 5 4444445555566666666666555443333 44444555555555555544334
Q ss_pred ccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCC
Q 037302 253 REVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTH 332 (408)
Q Consensus 253 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 332 (408)
..+..+++|++|++++|.+.......+..+++|++|++++|.++...+..+..+++|++|++++|.+++..+..+..+++
T Consensus 147 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 226 (285)
T 1ozn_A 147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA 226 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTT
T ss_pred hHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcc
Confidence 44455555555555555555444444555666666666666666555555666666666666666666544455666666
Q ss_pred ccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCCccccC
Q 037302 333 LRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVRI 377 (408)
Q Consensus 333 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~ 377 (408)
|+.|++++|++...-+. ......++.+....+.+....|+.+..
T Consensus 227 L~~L~l~~N~~~c~~~~-~~~~~~l~~~~~~~~~~~c~~p~~l~g 270 (285)
T 1ozn_A 227 LQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRLAG 270 (285)
T ss_dssp CCEEECCSSCEECSGGG-HHHHHHHHHCCSEECCCBEEESGGGTT
T ss_pred cCEEeccCCCccCCCCc-HHHHHHHHhcccccCccccCCchHhCC
Confidence 66666666665522111 011122344445555555555555544
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=2.8e-24 Score=201.55 Aligned_cols=247 Identities=23% Similarity=0.223 Sum_probs=216.3
Q ss_pred CcEEeCCCceecccCcccccCCCCCceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccC
Q 037302 69 LVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDN 148 (408)
Q Consensus 69 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 148 (408)
...++..+..+. ..|..+. ++++.|++++|.+..+.+..|.++++|++|++++|.+....+..|..+++|++|++++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 457777777776 5565544 7899999999999988889999999999999999999877778899999999999999
Q ss_pred CcccCcCchhhccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcc-cccccCcccccccccCeEEccCCcCCCCC
Q 037302 149 NNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNS-LTGPIPSTIGYLNLGGKLDLSHNRLDSPI 227 (408)
Q Consensus 149 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~l~l~~~~~~~~~ 227 (408)
|.++......+..+++|++|++++|.+.......+..+++|+.|+++++. +.......+..+++|+.|++++|.+...
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~- 200 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI- 200 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-
Confidence 99987767788999999999999999887666788999999999999854 4444455788899999999999988754
Q ss_pred CcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCC
Q 037302 228 PPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCS 307 (408)
Q Consensus 228 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 307 (408)
+ .+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|++++|.++...+..+..++
T Consensus 201 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 279 (440)
T 3zyj_A 201 P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLH 279 (440)
T ss_dssp C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCT
T ss_pred c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcccc
Confidence 3 477889999999999999988888899999999999999999888888899999999999999999988778888999
Q ss_pred CCcEEEcCCCccC
Q 037302 308 QLQNLVLSHNTLS 320 (408)
Q Consensus 308 ~L~~L~l~~~~~~ 320 (408)
+|+.|++++|++.
T Consensus 280 ~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 280 HLERIHLHHNPWN 292 (440)
T ss_dssp TCCEEECCSSCEE
T ss_pred CCCEEEcCCCCcc
Confidence 9999999999875
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=2.6e-24 Score=202.46 Aligned_cols=246 Identities=23% Similarity=0.214 Sum_probs=133.7
Q ss_pred cEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCceeecCCccccccCCCcCCCCCCCCEEEcCCC
Q 037302 46 EELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLN 125 (408)
Q Consensus 46 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~ 125 (408)
+.++..+..++ ..|..+. +++++|++++|.+....+..|.++++|++|++++|.+..+.+..|.++++|++|++++|
T Consensus 57 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 57 SKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp CEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 44455444443 2222222 35566666666555545555555566666666665555555555555556666666555
Q ss_pred eecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccccccCc
Q 037302 126 QLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPS 205 (408)
Q Consensus 126 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 205 (408)
.+....+..+..+++|++|++++|.+.......+..+++|+.|+++++.. +......
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~-----------------------l~~i~~~ 190 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKK-----------------------LEYISEG 190 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTT-----------------------CCEECTT
T ss_pred cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCC-----------------------ccccChh
Confidence 55544444455555555555555555544444455555555555554322 2212222
Q ss_pred ccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCC
Q 037302 206 TIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNL 285 (408)
Q Consensus 206 ~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 285 (408)
.+..+++|+.|++++|.+... ..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+....+..+..+++|
T Consensus 191 ~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 268 (452)
T 3zyi_A 191 AFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASL 268 (452)
T ss_dssp TTTTCTTCCEEECTTSCCSSC--CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred hccCCCCCCEEECCCCccccc--ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCC
Confidence 344444555555555544432 134455666666666666665555556666666666666666655555556666666
Q ss_pred cEEeCCCCccccCCCcCCcCCCCCcEEEcCCCcc
Q 037302 286 TSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTL 319 (408)
Q Consensus 286 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 319 (408)
++|++++|.++......+..+++|+.|++++|++
T Consensus 269 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 269 VELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp CEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred CEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 6666666666655555556666666666666654
No 61
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=1.6e-24 Score=194.77 Aligned_cols=234 Identities=24% Similarity=0.337 Sum_probs=136.0
Q ss_pred CCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEe
Q 037302 115 TNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLL 194 (408)
Q Consensus 115 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 194 (408)
+++++|+++++.+. ..+..+..+++|++|++++|.+. ..+..+..+++|++|++++|.+. .++..+..+++|+.|++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 45555555555554 33444444555555555555554 34444555555555555555544 33444555555555555
Q ss_pred cCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCccccc
Q 037302 195 NRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGS 274 (408)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 274 (408)
++|...+..+..+.. . .....+..+++|++|++++|.+. ..+..+..+++|++|++++|.+..
T Consensus 158 ~~n~~~~~~p~~~~~------~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~- 220 (328)
T 4fcg_A 158 RACPELTELPEPLAS------T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA- 220 (328)
T ss_dssp EEETTCCCCCSCSEE------E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-
T ss_pred CCCCCccccChhHhh------c---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-
Confidence 554433222222111 0 00112334666777777776666 445556666777777777776663
Q ss_pred CCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCC
Q 037302 275 IPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYI 354 (408)
Q Consensus 275 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 354 (408)
.+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.+|..+..+
T Consensus 221 l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L 300 (328)
T 4fcg_A 221 LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300 (328)
T ss_dssp CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGS
T ss_pred CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhc
Confidence 33446666777777777776666666666667777777777776666666666777777777777777776777777777
Q ss_pred CCccEEeCCCCccC
Q 037302 355 PNISAVDLSKNNLS 368 (408)
Q Consensus 355 ~~L~~L~l~~~~l~ 368 (408)
++|+.+.+..+.+.
T Consensus 301 ~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 301 PANCIILVPPHLQA 314 (328)
T ss_dssp CTTCEEECCGGGSC
T ss_pred cCceEEeCCHHHHH
Confidence 77777776665554
No 62
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=1.8e-29 Score=246.37 Aligned_cols=162 Identities=22% Similarity=0.179 Sum_probs=86.5
Q ss_pred ccccccCCCCCCcEEEcCCCcccccc---------------chhhccCCCCcEEeCCCCcCCCCCccccc-CCCCCcEEe
Q 037302 10 LSQLNFTCFPNLESIIIPYTLLSGRI---------------PSEIGALSKLEELALPYNSLTGTIPAEIG-SLRNLVELD 73 (408)
Q Consensus 10 ~~~~~~~~~~~L~~L~l~~~~~~~~~---------------~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~ 73 (408)
.+...+.++|+|++|+++++...... ......+++|++|+++++.+++.....+. .+++|++|+
T Consensus 57 ~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~ 136 (594)
T 2p1m_B 57 SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLV 136 (594)
T ss_dssp CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEE
T ss_pred CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEe
Confidence 34455667777777777766432111 11234567777777777766544334443 466777777
Q ss_pred CCCc-eeccc-CcccccCCCCCceeecCCccccccCCCc----CCCCCCCCEEEcCCCe--eccc-CcccccCCCCCceE
Q 037302 74 LSNN-ILNGS-IPLEFGNLKDLDALRLRGNKLDGLIPSS----IGNLTNLTHLDLSLNQ--LSGR-LPQEVGNLKNLLSL 144 (408)
Q Consensus 74 l~~~-~~~~~-~~~~~~~l~~L~~L~l~~~~i~~~~~~~----l~~l~~L~~L~l~~~~--~~~~-~~~~~~~l~~L~~L 144 (408)
+++| .+.+. .+..+..+++|++|++++|.+....+.. ...+++|++|+++++. +... .......+++|++|
T Consensus 137 L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L 216 (594)
T 2p1m_B 137 LSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSL 216 (594)
T ss_dssp EESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEE
T ss_pred CCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEE
Confidence 7776 33321 3333346677777777777654433222 2255677777777664 2111 11112335677777
Q ss_pred eccCCc-ccCcCchhhccCCCCCEEEcCC
Q 037302 145 FLDNNN-LTGPIPSTLYHLNQLSNLYLAY 172 (408)
Q Consensus 145 ~l~~~~-~~~~~~~~~~~~~~L~~L~l~~ 172 (408)
+++++. +. ..+..+..+++|+.+.+..
T Consensus 217 ~L~~~~~~~-~l~~~~~~~~~L~~L~l~~ 244 (594)
T 2p1m_B 217 KLNRAVPLE-KLATLLQRAPQLEELGTGG 244 (594)
T ss_dssp ECCTTSCHH-HHHHHHHHCTTCSEEECSB
T ss_pred ecCCCCcHH-HHHHHHhcCCcceEccccc
Confidence 776652 22 2333444555566655443
No 63
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=6.3e-24 Score=190.80 Aligned_cols=236 Identities=24% Similarity=0.306 Sum_probs=180.8
Q ss_pred CCCCCceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEE
Q 037302 89 NLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNL 168 (408)
Q Consensus 89 ~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 168 (408)
...+++.|+++++.+. ..|..+..+++|++|++++|.+. ..+..+..+++|++|++++|.+. .++..+..+++|++|
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 3578999999999998 45566888999999999999998 67888999999999999999998 667789999999999
Q ss_pred EcCCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCccc
Q 037302 169 YLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLS 248 (408)
Q Consensus 169 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 248 (408)
++++|......+..+.. . .....+..++.|++|++++|.+. ..+..+..+++|++|++++|.+.
T Consensus 156 ~L~~n~~~~~~p~~~~~------~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 156 SIRACPELTELPEPLAS------T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS 219 (328)
T ss_dssp EEEEETTCCCCCSCSEE------E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC
T ss_pred ECCCCCCccccChhHhh------c---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC
Confidence 99998776555544332 0 11223455566666666666665 34555666777777777777766
Q ss_pred ccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccc
Q 037302 249 GLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIG 328 (408)
Q Consensus 249 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 328 (408)
. .+..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+.++++|++|++++|++.+..+..+.
T Consensus 220 ~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~ 298 (328)
T 4fcg_A 220 A-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298 (328)
T ss_dssp C-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG
T ss_pred c-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHh
Confidence 3 444566777888888888777766777777788888888888877777777778888888888888887778888888
Q ss_pred cCCCccEEEcCCcccc
Q 037302 329 NLTHLRQLDLSHNFIN 344 (408)
Q Consensus 329 ~~~~L~~L~l~~~~~~ 344 (408)
.+++++.+++..+.+.
T Consensus 299 ~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 299 QLPANCIILVPPHLQA 314 (328)
T ss_dssp GSCTTCEEECCGGGSC
T ss_pred hccCceEEeCCHHHHH
Confidence 8888888888876554
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=6.2e-26 Score=203.23 Aligned_cols=257 Identities=21% Similarity=0.210 Sum_probs=117.6
Q ss_pred CcEEeCCCceecccCcccccCCCCCceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccC
Q 037302 69 LVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDN 148 (408)
Q Consensus 69 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 148 (408)
++..+++.+.+.......+..+++|++|++++|.+....+..+..+++|++|++++|.+....+ +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 3344444444433333334455566666666666655555555566666666666665543221 45555555555555
Q ss_pred CcccCcCchhhccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCC
Q 037302 149 NNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIP 228 (408)
Q Consensus 149 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~ 228 (408)
|.++.. ...++|++|++++|.+.. ... ..++.|+.+++++|.+....+
T Consensus 90 n~l~~l-----~~~~~L~~L~l~~n~l~~------------------------~~~---~~~~~L~~L~l~~N~l~~~~~ 137 (317)
T 3o53_A 90 NYVQEL-----LVGPSIETLHAANNNISR------------------------VSC---SRGQGKKNIYLANNKITMLRD 137 (317)
T ss_dssp SEEEEE-----EECTTCCEEECCSSCCSE------------------------EEE---CCCSSCEEEECCSSCCCSGGG
T ss_pred Cccccc-----cCCCCcCEEECCCCccCC------------------------cCc---cccCCCCEEECCCCCCCCccc
Confidence 554421 122444444444443321 111 112334444444444433333
Q ss_pred cccCCCCCccEEEccCCcccccCCccc-cCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCC
Q 037302 229 PTIGNLTNLTSLDLSSNQLSGLLPREV-GNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCS 307 (408)
Q Consensus 229 ~~l~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 307 (408)
..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+.... ....+++|++|++++|.++... ..+..++
T Consensus 138 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~l~-~~~~~l~ 214 (317)
T 3o53_A 138 LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMG-PEFQSAA 214 (317)
T ss_dssp BCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEEC-GGGGGGT
T ss_pred hhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc--cccccccCCEEECCCCcCCcch-hhhcccC
Confidence 334444455555555554443333222 23445555555555444321 1122445555555555554322 2244445
Q ss_pred CCcEEEcCCCccCCcCCcccccCCCccEEEcCCcccc-ccCCcCCCCCCCccEEeCC
Q 037302 308 QLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFIN-GTIPSQLGYIPNISAVDLS 363 (408)
Q Consensus 308 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~ 363 (408)
+|++|++++|+++ ..+..+..+++|+.|++++|++. +..+..+..+++|+.+++.
T Consensus 215 ~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 215 GVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp TCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred cccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 5555555555544 22333444455555555555544 3334444444455555444
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=2e-25 Score=199.92 Aligned_cols=261 Identities=20% Similarity=0.179 Sum_probs=196.4
Q ss_pred EcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccc
Q 037302 121 DLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLT 200 (408)
Q Consensus 121 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 200 (408)
+++.+.+.......+..+++|++|++++|.++...+..+..+++|++|++++|.+.... .+..+++|+.|++++|.+.
T Consensus 16 ~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~l~~L~~L~Ls~n~l~ 93 (317)
T 3o53_A 16 KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--DLESLSTLRTLDLNNNYVQ 93 (317)
T ss_dssp SCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE--EETTCTTCCEEECCSSEEE
T ss_pred eccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch--hhhhcCCCCEEECcCCccc
Confidence 34444443333334445667777777777777655566777777777777777765332 2677888888888888776
Q ss_pred cccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccc-
Q 037302 201 GPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTI- 279 (408)
Q Consensus 201 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~- 279 (408)
+. ...+.|+.+++++|.+....+. .+++|++|++++|.+....+..+..+++|+.|++++|.+....+..+
T Consensus 94 ~l-----~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 165 (317)
T 3o53_A 94 EL-----LVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA 165 (317)
T ss_dssp EE-----EECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGG
T ss_pred cc-----cCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHh
Confidence 32 2348899999999988764433 35789999999999987777788889999999999999886655544
Q ss_pred cCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccE
Q 037302 280 GYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISA 359 (408)
Q Consensus 280 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 359 (408)
..+++|++|++++|.++... ....+++|++|++++|++++. +..+..+++|++|++++|+++ .+|..+..+++|+.
T Consensus 166 ~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~ 241 (317)
T 3o53_A 166 ASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEH 241 (317)
T ss_dssp GGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCE
T ss_pred hccCcCCEEECCCCcCcccc--cccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCE
Confidence 47899999999999998652 233589999999999999854 445889999999999999999 56778899999999
Q ss_pred EeCCCCccC-CcCCccccCC---CeEEccC-CccCCCCCCC
Q 037302 360 VDLSKNNLS-GVVPASVRII---PKLIVSE-NNLELENSTS 395 (408)
Q Consensus 360 L~l~~~~l~-~~~~~~~~~l---~~l~l~~-n~~~~~~~~~ 395 (408)
|++++|++. +..|..+..+ +++++++ +.++|..|..
T Consensus 242 L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~ 282 (317)
T 3o53_A 242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE 282 (317)
T ss_dssp EECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCC
T ss_pred EEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhc
Confidence 999999998 5566655544 4777773 3466655544
No 66
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=4.3e-28 Score=236.58 Aligned_cols=377 Identities=15% Similarity=0.118 Sum_probs=251.8
Q ss_pred cccCCCCCCcEEEcCCCccccccchhhc-cCCCCcEEeCCCC-cCCCC-CcccccCCCCCcEEeCCCceecccCcccc--
Q 037302 13 LNFTCFPNLESIIIPYTLLSGRIPSEIG-ALSKLEELALPYN-SLTGT-IPAEIGSLRNLVELDLSNNILNGSIPLEF-- 87 (408)
Q Consensus 13 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-- 87 (408)
..+.++++|++|+++++.+.+..+..+. .+++|++|++.+| .++.. .+..+..+++|++|++++|.+.+..+..+
T Consensus 99 ~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~ 178 (594)
T 2p1m_B 99 AMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSH 178 (594)
T ss_dssp HHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGG
T ss_pred HHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHH
Confidence 3356789999999999988766666664 7899999999988 44322 23334578999999999998775443333
Q ss_pred --cCCCCCceeecCCccccccCCC----cCCCCCCCCEEEcCCC-eecccCcccccCCCCCceEeccCCc-------ccC
Q 037302 88 --GNLKDLDALRLRGNKLDGLIPS----SIGNLTNLTHLDLSLN-QLSGRLPQEVGNLKNLLSLFLDNNN-------LTG 153 (408)
Q Consensus 88 --~~l~~L~~L~l~~~~i~~~~~~----~l~~l~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~~~-------~~~ 153 (408)
..+++|++|+++++. ..+... .+..+++|++|++++| .+. ..+..+..+++|+++++..+. +.
T Consensus 179 ~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~- 255 (594)
T 2p1m_B 179 FPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLE-KLATLLQRAPQLEELGTGGYTAEVRPDVYS- 255 (594)
T ss_dssp SCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHH-HHHHHHHHCTTCSEEECSBCCCCCCHHHHH-
T ss_pred HhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHH-HHHHHHhcCCcceEcccccccCccchhhHH-
Confidence 367799999999885 112111 1234689999999988 333 355666778999999876543 22
Q ss_pred cCchhhccCCCCCEEE-cCCCcCCCCCCccccCCCCCCEEEecCcccccc-cCcccccccccCeEEccCCcCCCC-CCcc
Q 037302 154 PIPSTLYHLNQLSNLY-LAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGP-IPSTIGYLNLGGKLDLSHNRLDSP-IPPT 230 (408)
Q Consensus 154 ~~~~~~~~~~~L~~L~-l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~l~l~~~~~~~~-~~~~ 230 (408)
.....+.++++|+.+. +..... ...+..+..+++|++|++++|.+.+. ....+..+++|++|.++++ +... ....
T Consensus 256 ~l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l 333 (594)
T 2p1m_B 256 GLSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVL 333 (594)
T ss_dssp HHHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHH
T ss_pred HHHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHH
Confidence 1233667889999883 332211 12233344678999999999886532 2223567889999999877 3211 1112
Q ss_pred cCCCCCccEEEccC---------CcccccCCcccc-CCCCCCEEeCCCCcccccCCccc-cCCCCCcEEeCC--C----C
Q 037302 231 IGNLTNLTSLDLSS---------NQLSGLLPREVG-NLKYLDSLSLDGNNLIGSIPPTI-GYLTNLTSLNLG--Y----N 293 (408)
Q Consensus 231 l~~~~~L~~L~l~~---------~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~--~----~ 293 (408)
...+++|++|++.+ +.+++.....+. .+++|+.|.+..+.+.+.....+ ..+++|++|+++ + +
T Consensus 334 ~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~ 413 (594)
T 2p1m_B 334 ASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPD 413 (594)
T ss_dssp HHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCC
T ss_pred HHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcc
Confidence 23478899999843 233332222233 47899999887776654433333 358999999998 3 3
Q ss_pred ccccCC-----CcCCcCCCCCcEEEcCCCccCCcCCccccc-CCCccEEEcCCccccccCCcCC-CCCCCccEEeCCCCc
Q 037302 294 QLSSSI-----PPELMNCSQLQNLVLSHNTLSGIVPPEIGN-LTHLRQLDLSHNFINGTIPSQL-GYIPNISAVDLSKNN 366 (408)
Q Consensus 294 ~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~ 366 (408)
.++... ...+..+++|+.|++++ .+++.....+.. +++|+.|++++|.+++..+..+ ..+++|+.|++++|+
T Consensus 414 ~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~ 492 (594)
T 2p1m_B 414 YLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCP 492 (594)
T ss_dssp TTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCS
T ss_pred cccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCC
Confidence 444211 11255689999999987 555443344444 7899999999999886655544 568999999999999
Q ss_pred cCCcCC----ccccCCCeEEccCCccCCCCCCC
Q 037302 367 LSGVVP----ASVRIIPKLIVSENNLELENSTS 395 (408)
Q Consensus 367 l~~~~~----~~~~~l~~l~l~~n~~~~~~~~~ 395 (408)
+.+..+ ..+.++++|++++|+++......
T Consensus 493 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 525 (594)
T 2p1m_B 493 FGDKALLANASKLETMRSLWMSSCSVSFGACKL 525 (594)
T ss_dssp CCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHH
T ss_pred CcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHH
Confidence 964433 23567889999999986544333
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=8.9e-23 Score=197.03 Aligned_cols=265 Identities=28% Similarity=0.285 Sum_probs=152.2
Q ss_pred CCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCceeecCCccccccCCCcCCCCCCCCEEEcC
Q 037302 44 KLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLS 123 (408)
Q Consensus 44 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~ 123 (408)
+++.|+++++.++ .+|..+. ++|+.|++++|.+. .+|. .+++|++|++++|.++.++. .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTSLPV----LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSCCCC----CCTTCCEEEEC
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECc
Confidence 5777777777776 4444443 67777777777666 3333 45677777777776654332 45666667666
Q ss_pred CCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCccccccc
Q 037302 124 LNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPI 203 (408)
Q Consensus 124 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 203 (408)
+|.+... +. .+++|+.|++++|.++.. +. .+++|++|++++|.+... + ..+
T Consensus 110 ~N~l~~l-~~---~l~~L~~L~L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~~l-~---~~~----------------- 160 (622)
T 3g06_A 110 SNPLTHL-PA---LPSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLASL-P---ALP----------------- 160 (622)
T ss_dssp SCCCCCC-CC---CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSCC-C---CCC-----------------
T ss_pred CCcCCCC-CC---CCCCcCEEECCCCCCCcC-CC---CCCCCCEEECcCCcCCCc-C---Ccc-----------------
Confidence 6666532 22 345566666666655432 21 124555555555544321 1 122
Q ss_pred CcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCC
Q 037302 204 PSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLT 283 (408)
Q Consensus 204 ~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 283 (408)
+.|+.|.+++|.+.... ..+++|+.|++++|.+... +. ..++|+.|.+.+|.+.... . .++
T Consensus 161 -------~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~l~-~---~~~ 221 (622)
T 3g06_A 161 -------SELCKLWAYNNQLTSLP----MLPSGLQELSVSDNQLASL-PT---LPSELYKLWAYNNRLTSLP-A---LPS 221 (622)
T ss_dssp -------TTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSSCC-C---CCT
T ss_pred -------CCCCEEECCCCCCCCCc----ccCCCCcEEECCCCCCCCC-CC---ccchhhEEECcCCcccccC-C---CCC
Confidence 34445555554444321 2345566666666655532 11 2356666666666655322 1 236
Q ss_pred CCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCC
Q 037302 284 NLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLS 363 (408)
Q Consensus 284 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 363 (408)
+|++|++++|.++. .+ ..+++|+.|++++|.++.+ +. .+++|+.|++++|.++ .+|..+..+++|+.|+++
T Consensus 222 ~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~l-p~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~ 292 (622)
T 3g06_A 222 GLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTSL-PM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 292 (622)
T ss_dssp TCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECC
T ss_pred CCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCcC-Cc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEec
Confidence 67777777776663 22 3446777777777776633 22 4567777777777777 556667777777777777
Q ss_pred CCccCCcCCcccc
Q 037302 364 KNNLSGVVPASVR 376 (408)
Q Consensus 364 ~~~l~~~~~~~~~ 376 (408)
+|++.+..|..+.
T Consensus 293 ~N~l~~~~~~~l~ 305 (622)
T 3g06_A 293 GNPLSERTLQALR 305 (622)
T ss_dssp SCCCCHHHHHHHH
T ss_pred CCCCCCcCHHHHH
Confidence 7777766665544
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.91 E-value=8.9e-25 Score=195.27 Aligned_cols=203 Identities=24% Similarity=0.233 Sum_probs=137.8
Q ss_pred cCCCCCEEEcCCCcCCCCCCccc--cCCCCCCEEEecCcccccccCcccccc-----cccCeEEccCCcCCCCCCcccCC
Q 037302 161 HLNQLSNLYLAYNNLVGPLPKEV--GNMKNLDSLLLNRNSLTGPIPSTIGYL-----NLGGKLDLSHNRLDSPIPPTIGN 233 (408)
Q Consensus 161 ~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~l~l~~~~~~~~~~~~l~~ 233 (408)
.+++|++|++++|.+....+..+ ..+++|++|++++|.+.+. +..+..+ +.|++|++++|.+....+..+..
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 46677777777777665555544 6677777777777777654 4555554 77888888888777766677778
Q ss_pred CCCccEEEccCCccccc--CCcc--ccCCCCCCEEeCCCCccccc---CCccccCCCCCcEEeCCCCccccCCC-cCCcC
Q 037302 234 LTNLTSLDLSSNQLSGL--LPRE--VGNLKYLDSLSLDGNNLIGS---IPPTIGYLTNLTSLNLGYNQLSSSIP-PELMN 305 (408)
Q Consensus 234 ~~~L~~L~l~~~~~~~~--~~~~--~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~ 305 (408)
+++|++|++++|.+.+. .+.. +..+++|++|++++|.+... ....+..+++|++|++++|.+++..+ ..+..
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 251 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh
Confidence 88888888888875432 1112 26677888888888877622 22334566788888888887776543 34555
Q ss_pred CCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCC
Q 037302 306 CSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSG 369 (408)
Q Consensus 306 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 369 (408)
+++|++|++++|.++ ..+..+. ++|++|++++|++++. |. +..+++|+.|++++|++++
T Consensus 252 l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 252 PSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred cCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 677888888888776 3444443 6777888888877754 54 6677777777777777764
No 69
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=3.1e-23 Score=181.47 Aligned_cols=190 Identities=29% Similarity=0.258 Sum_probs=138.5
Q ss_pred cccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCc
Q 037302 207 IGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLT 286 (408)
Q Consensus 207 ~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 286 (408)
+..++.|++|+++++.+... ..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+
T Consensus 59 l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 136 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT 136 (272)
T ss_dssp GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCC
Confidence 33444555555555544432 2455666777777777776655555566777777777777777655555677778888
Q ss_pred EEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCc
Q 037302 287 SLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNN 366 (408)
Q Consensus 287 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 366 (408)
+|++++|.++...+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|+
T Consensus 137 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCC
Confidence 88888888876666667778888888888888877666667788888888888888887777777888888888888888
Q ss_pred cCCcCCccccCCCeEEccCCccCCCCCCCcCCCCCC
Q 037302 367 LSGVVPASVRIIPKLIVSENNLELENSTSSENAPPP 402 (408)
Q Consensus 367 l~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~ 402 (408)
+.+..| +++.+++..|.++|.+|.++.++++.
T Consensus 217 ~~~~~~----~l~~l~~~~n~~~g~ip~~~~~~~~~ 248 (272)
T 3rfs_A 217 WDCTCP----GIRYLSEWINKHSGVVRNSAGSVAPD 248 (272)
T ss_dssp BCCCTT----TTHHHHHHHHHTGGGBBCTTSCBCGG
T ss_pred ccccCc----HHHHHHHHHHhCCCcccCcccccCCC
Confidence 876543 56788888888888888888877653
No 70
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.90 E-value=9.9e-22 Score=189.75 Aligned_cols=263 Identities=27% Similarity=0.285 Sum_probs=174.0
Q ss_pred CCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCceeec
Q 037302 19 PNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRL 98 (408)
Q Consensus 19 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 98 (408)
.++++|+++++.+. .+|..+. ++|++|++++|.++. ++. .+++|++|++++|.+. .+|. .+++|++|++
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEEC
Confidence 46999999999988 5665554 799999999999884 333 6789999999999987 4454 6799999999
Q ss_pred CCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCC
Q 037302 99 RGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGP 178 (408)
Q Consensus 99 ~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 178 (408)
++|.++.+.. .+++|+.|++++|.+.. .+. .+++|++|++++|.++.. +. ..++|+.|++++|.+...
T Consensus 109 s~N~l~~l~~----~l~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~l 176 (622)
T 3g06_A 109 FSNPLTHLPA----LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTSL 176 (622)
T ss_dssp CSCCCCCCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSCC
T ss_pred cCCcCCCCCC----CCCCcCEEECCCCCCCc-CCC---CCCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCCC
Confidence 9999886543 57899999999999874 333 358999999999988743 22 357899999999988742
Q ss_pred CCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCC
Q 037302 179 LPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNL 258 (408)
Q Consensus 179 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 258 (408)
+ ..+++|+.|++++|.+.+. +. .++.|+.|.+++|.+.... . .+++|+.|++++|.+.
T Consensus 177 -~---~~~~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~l~-~---~~~~L~~L~Ls~N~L~---------- 234 (622)
T 3g06_A 177 -P---MLPSGLQELSVSDNQLASL-PT---LPSELYKLWAYNNRLTSLP-A---LPSGLKELIVSGNRLT---------- 234 (622)
T ss_dssp -C---CCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSSCC-C---CCTTCCEEECCSSCCS----------
T ss_pred -c---ccCCCCcEEECCCCCCCCC-CC---ccchhhEEECcCCcccccC-C---CCCCCCEEEccCCccC----------
Confidence 2 4567788888888776532 11 2345555555555544321 1 1244455555544443
Q ss_pred CCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEc
Q 037302 259 KYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDL 338 (408)
Q Consensus 259 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 338 (408)
.. + ..+++|++|++++|.++. ++. .+++|+.|++++|.++ .++..+..+++|+.|++
T Consensus 235 --------------~l-p---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L 291 (622)
T 3g06_A 235 --------------SL-P---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 291 (622)
T ss_dssp --------------CC-C---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred --------------cC-C---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence 21 1 233455555555555552 222 3455555555555555 33445555555666666
Q ss_pred CCccccccCCc
Q 037302 339 SHNFINGTIPS 349 (408)
Q Consensus 339 ~~~~~~~~~~~ 349 (408)
++|++++..|.
T Consensus 292 ~~N~l~~~~~~ 302 (622)
T 3g06_A 292 EGNPLSERTLQ 302 (622)
T ss_dssp CSCCCCHHHHH
T ss_pred cCCCCCCcCHH
Confidence 66655544443
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.90 E-value=1.4e-24 Score=193.94 Aligned_cols=248 Identities=21% Similarity=0.234 Sum_probs=190.4
Q ss_pred ccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCC-CCCcccc-------CCCCCCEEEecCcccccccCcc
Q 037302 135 VGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVG-PLPKEVG-------NMKNLDSLLLNRNSLTGPIPST 206 (408)
Q Consensus 135 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~ 206 (408)
+...++|+.++++++.+ ..+..+... ++.|+++++.+.. ..+..+. .+++|++|++++|.+.+..+..
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 34456677777777776 344444433 6777777776632 2333333 6899999999999998766665
Q ss_pred c--ccccccCeEEccCCcCCCCCCcccCCC-----CCccEEEccCCcccccCCccccCCCCCCEEeCCCCccccc--CCc
Q 037302 207 I--GYLNLGGKLDLSHNRLDSPIPPTIGNL-----TNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGS--IPP 277 (408)
Q Consensus 207 ~--~~~~~L~~l~l~~~~~~~~~~~~l~~~-----~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~ 277 (408)
+ ..++.|++|++++|.+... +..+..+ ++|++|++++|.+....+..++.+++|++|++++|.+... .+.
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 193 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence 4 8899999999999999876 6666555 8999999999999877778899999999999999986533 122
Q ss_pred c--ccCCCCCcEEeCCCCcccc---CCCcCCcCCCCCcEEEcCCCccCCcCC-cccccCCCccEEEcCCccccccCCcCC
Q 037302 278 T--IGYLTNLTSLNLGYNQLSS---SIPPELMNCSQLQNLVLSHNTLSGIVP-PEIGNLTHLRQLDLSHNFINGTIPSQL 351 (408)
Q Consensus 278 ~--~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~ 351 (408)
. +..+++|++|++++|.++. .....+..+++|++|++++|++.+..+ ..+..+++|++|++++|.++ .+|..+
T Consensus 194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~ 272 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL 272 (312)
T ss_dssp HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSC
T ss_pred HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhc
Confidence 2 3788999999999999883 222334578999999999999987653 45667899999999999999 667666
Q ss_pred CCCCCccEEeCCCCccCCcCCc--cccCCCeEEccCCccCCC
Q 037302 352 GYIPNISAVDLSKNNLSGVVPA--SVRIIPKLIVSENNLELE 391 (408)
Q Consensus 352 ~~~~~L~~L~l~~~~l~~~~~~--~~~~l~~l~l~~n~~~~~ 391 (408)
. ++|+.|++++|++++. |. .+.++++|++++|++++.
T Consensus 273 ~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 273 P--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp C--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCTTTCC
T ss_pred c--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCCCCCC
Confidence 5 8999999999999987 43 233556999999999764
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=4.1e-23 Score=195.35 Aligned_cols=232 Identities=21% Similarity=0.195 Sum_probs=144.7
Q ss_pred CCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEc
Q 037302 139 KNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDL 218 (408)
Q Consensus 139 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l 218 (408)
++|++|++++|.+....+..+..+++|+.|++++|.+....+ +..+++|+.|++++|.+.+.. ..+.|+.|++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L 106 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHA 106 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEEC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEEC
Confidence 355666666555554444555555666666666555543222 555666666666666554321 2256666666
Q ss_pred cCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCcccc-CCCCCcEEeCCCCcccc
Q 037302 219 SHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIG-YLTNLTSLNLGYNQLSS 297 (408)
Q Consensus 219 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~ 297 (408)
++|.+....+. .+++|+.|++++|.+.+..+..++.+++|+.|++++|.+....+..+. .+++|++|++++|.+++
T Consensus 107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 66666543332 346677777777777666566666777777777777777655444443 56777777777777775
Q ss_pred CCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccC-CcCCcccc
Q 037302 298 SIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLS-GVVPASVR 376 (408)
Q Consensus 298 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~ 376 (408)
.. ....+++|+.|++++|.+++. +..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|++. +..|..+.
T Consensus 184 ~~--~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~ 259 (487)
T 3oja_A 184 VK--GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (487)
T ss_dssp EE--CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHHHT
T ss_pred cc--ccccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHHHH
Confidence 42 233467788888888877744 334677778888888888777 35666777778888888888776 44444444
Q ss_pred CCC---eEEcc
Q 037302 377 IIP---KLIVS 384 (408)
Q Consensus 377 ~l~---~l~l~ 384 (408)
.+. .+++.
T Consensus 260 ~l~~L~~l~~~ 270 (487)
T 3oja_A 260 KNQRVQTVAKQ 270 (487)
T ss_dssp TCHHHHHHHHH
T ss_pred hCCCCcEEecc
Confidence 433 44443
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=3.4e-22 Score=175.45 Aligned_cols=207 Identities=23% Similarity=0.226 Sum_probs=118.6
Q ss_pred CCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEcc
Q 037302 164 QLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLS 243 (408)
Q Consensus 164 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~ 243 (408)
++++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|+++++.+....+..+..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 34444444444433333334444445555555444443333344445555555555555544444455555666666666
Q ss_pred CCcccccCCccccCCCCCCEEeCCCCccccc-CCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCc----EEEcCCCc
Q 037302 244 SNQLSGLLPREVGNLKYLDSLSLDGNNLIGS-IPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQ----NLVLSHNT 318 (408)
Q Consensus 244 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~----~L~l~~~~ 318 (408)
+|.+.......+..+++|++|++++|.+... .+..+..+++|++|++++|.++...+..+..+++|+ +|++++|.
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~ 188 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence 6655544444455666666666666665542 345566667777777777766655444555545554 67777777
Q ss_pred cCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcC
Q 037302 319 LSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVV 371 (408)
Q Consensus 319 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 371 (408)
+.+..+..+. ..+|++|++++|++++..+..+..+++|+.|++++|++.+..
T Consensus 189 l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 189 MNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp CCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred ccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 7655444443 346777777777777555556677777777777777776544
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=1.9e-21 Score=170.03 Aligned_cols=183 Identities=26% Similarity=0.297 Sum_probs=115.2
Q ss_pred CCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCC
Q 037302 188 NLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLD 267 (408)
Q Consensus 188 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 267 (408)
+++.|++++|.+....+..+..+++|++|+++++.+....+..+..+++|++|++++|.+.......+..+++|++|+++
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 117 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence 44444444444443333344445555555555555544444445556666666666666655444555666667777776
Q ss_pred CCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccC
Q 037302 268 GNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTI 347 (408)
Q Consensus 268 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 347 (408)
++.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.++...+..|..+++|++|++++|++++..
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 197 (270)
T 2o6q_A 118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP 197 (270)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCC
Confidence 66666555555666777777777777777555555667777777777777777666666777777777777777777655
Q ss_pred CcCCCCCCCccEEeCCCCccCCc
Q 037302 348 PSQLGYIPNISAVDLSKNNLSGV 370 (408)
Q Consensus 348 ~~~~~~~~~L~~L~l~~~~l~~~ 370 (408)
+..+..+++|+.|++++|++...
T Consensus 198 ~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 198 EGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCBCCS
T ss_pred HHHhccccCCCEEEecCCCeeCC
Confidence 55667777777777777776543
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=4.5e-22 Score=174.67 Aligned_cols=206 Identities=24% Similarity=0.230 Sum_probs=178.8
Q ss_pred CCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeC
Q 037302 187 KNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSL 266 (408)
Q Consensus 187 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 266 (408)
++++.|++++|.+.+..+..+..++.|++++++++.+....+..+..+++|++|++++|.+....+..+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 57999999999998777778889999999999999998777778899999999999999998777788999999999999
Q ss_pred CCCcccccCCccccCCCCCcEEeCCCCccccC-CCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCcc----EEEcCCc
Q 037302 267 DGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSS-IPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLR----QLDLSHN 341 (408)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~----~L~l~~~ 341 (408)
+++.+.......+..+++|++|++++|.++.. .+..+.++++|++|++++|++++..+..+..+++|+ .|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 99998876666788999999999999999864 477889999999999999999877777777777777 8999999
Q ss_pred cccccCCcCCCCCCCccEEeCCCCccCCcCCcccc---CCCeEEccCCccCCCCC
Q 037302 342 FINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVR---IIPKLIVSENNLELENS 393 (408)
Q Consensus 342 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~---~l~~l~l~~n~~~~~~~ 393 (408)
.+++..+..+. ..+|+.|++++|+++++.+..+. ++++|++++|++++..|
T Consensus 188 ~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 188 PMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred cccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 99966665554 45899999999999988876654 56799999999987554
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=2.2e-21 Score=169.50 Aligned_cols=200 Identities=28% Similarity=0.285 Sum_probs=114.3
Q ss_pred CCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCceeec
Q 037302 19 PNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRL 98 (408)
Q Consensus 19 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 98 (408)
++.+.++++++.+. .+|..+. +++++|+++++.+....+..|.++++|++|++++|.+....+..|..+++|++|++
T Consensus 16 ~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 16 NNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 35667777766665 3343332 46777777777666555556666777777777776666444445566666777777
Q ss_pred CCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCC
Q 037302 99 RGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGP 178 (408)
Q Consensus 99 ~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 178 (408)
++|.+..+.+..+..+++|++|++++|.+....+..+..+++|++|++++|.++......+..+++|+.|++++|.+...
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence 66666655555566666666666666666555445555666666666666655544444455555566666555555444
Q ss_pred CCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCC
Q 037302 179 LPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHN 221 (408)
Q Consensus 179 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 221 (408)
.+..+..+++|+.|++++|.+.......+..++.|+.+++++|
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCC
Confidence 3334445555555555555444333333333444444444443
No 77
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=2e-23 Score=197.50 Aligned_cols=237 Identities=22% Similarity=0.235 Sum_probs=140.9
Q ss_pred CCCCCceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEE
Q 037302 89 NLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNL 168 (408)
Q Consensus 89 ~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 168 (408)
.+++|++|++++|.+....+..|..+++|++|++++|.+.+..+ +..+++|++|++++|.++.. ...++|+.|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-----~~~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-----LVGPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-----EECTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-----CCCCCcCEE
Confidence 44578888888888777767777788888888888877764333 66777777777777776532 123566666
Q ss_pred EcCCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCccc
Q 037302 169 YLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLS 248 (408)
Q Consensus 169 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 248 (408)
++++|.+....+ ..+++|+.|++++| .+....+..+..+++|+.|++++|.+.
T Consensus 105 ~L~~N~l~~~~~---~~l~~L~~L~L~~N------------------------~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 157 (487)
T 3oja_A 105 HAANNNISRVSC---SRGQGKKNIYLANN------------------------KITMLRDLDEGCRSRVQYLDLKLNEID 157 (487)
T ss_dssp ECCSSCCCCEEE---CCCSSCEEEECCSS------------------------CCCSGGGBCGGGGSSEEEEECTTSCCC
T ss_pred ECcCCcCCCCCc---cccCCCCEEECCCC------------------------CCCCCCchhhcCCCCCCEEECCCCCCC
Confidence 666665543211 22344455555444 444444444445555666666666555
Q ss_pred ccCCcccc-CCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCccc
Q 037302 249 GLLPREVG-NLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEI 327 (408)
Q Consensus 249 ~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 327 (408)
+..+..+. .+++|+.|++++|.+.... ....+++|++|++++|.+++..+ .+..+++|+.|++++|.+.+ .+..+
T Consensus 158 ~~~~~~l~~~l~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l 233 (487)
T 3oja_A 158 TVNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKAL 233 (487)
T ss_dssp EEEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTC
T ss_pred CcChHHHhhhCCcccEEecCCCcccccc--ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhh
Confidence 44444443 4566666666666655331 22245666666666666664333 35566666666666666663 34455
Q ss_pred ccCCCccEEEcCCcccc-ccCCcCCCCCCCccEEeCC
Q 037302 328 GNLTHLRQLDLSHNFIN-GTIPSQLGYIPNISAVDLS 363 (408)
Q Consensus 328 ~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~ 363 (408)
..+++|+.|++++|++. +..|..+..++.|+.+.+.
T Consensus 234 ~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred ccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 66666777777777665 3445555556666665554
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=8.3e-22 Score=172.38 Aligned_cols=209 Identities=29% Similarity=0.275 Sum_probs=145.7
Q ss_pred ccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccE
Q 037302 160 YHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTS 239 (408)
Q Consensus 160 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~ 239 (408)
..+++|+.+.++++.+... ..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+....+..+..+++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred ccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 3455566666665554422 2345566666666666655532 24556666777777766666655556667777777
Q ss_pred EEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCcc
Q 037302 240 LDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTL 319 (408)
Q Consensus 240 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 319 (408)
|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.++...+..+..+++|++|++++|++
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence 77777777765556667777788888887777755555667778888888888888766666677788888888888888
Q ss_pred CCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCCccccCCC
Q 037302 320 SGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVRIIP 379 (408)
Q Consensus 320 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~ 379 (408)
.+..+..+..+++|+.|++++|++. ..+++|+.+.+..|++.|.+|..++.+.
T Consensus 194 ~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 194 KSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred CccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcccCcccccC
Confidence 7776666777888888888888665 3466788888888888888887777665
No 79
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=3e-23 Score=187.68 Aligned_cols=234 Identities=20% Similarity=0.240 Sum_probs=129.3
Q ss_pred CCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccccc-cCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEE
Q 037302 163 NQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGP-IPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLD 241 (408)
Q Consensus 163 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~ 241 (408)
+.++.+++.++.+....+. +..+++|++|++++|.+.+. .+..+..+++|++|++++|.+....+..++.+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 4444444444444332222 23445555555555544322 333445555555555555554433344455566666666
Q ss_pred ccCC-ccccc-CCccccCCCCCCEEeCCCC-ccccc-CCccccCCC-CCcEEeCCCCc--cc-cCCCcCCcCCCCCcEEE
Q 037302 242 LSSN-QLSGL-LPREVGNLKYLDSLSLDGN-NLIGS-IPPTIGYLT-NLTSLNLGYNQ--LS-SSIPPELMNCSQLQNLV 313 (408)
Q Consensus 242 l~~~-~~~~~-~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~-~L~~L~l~~~~--~~-~~~~~~~~~~~~L~~L~ 313 (408)
+++| .+++. .+..+..+++|++|++++| .+.+. .+..+..++ +|++|++++|. ++ ...+..+..+++|++|+
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~ 228 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence 6666 44432 3334555667777777776 55432 234455666 77777777763 33 12233445567777777
Q ss_pred cCCCc-cCCcCCcccccCCCccEEEcCCcc-ccccCCcCCCCCCCccEEeCCCCccCCcCCccc-cCCCeEEccCCccCC
Q 037302 314 LSHNT-LSGIVPPEIGNLTHLRQLDLSHNF-INGTIPSQLGYIPNISAVDLSKNNLSGVVPASV-RIIPKLIVSENNLEL 390 (408)
Q Consensus 314 l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~l~~l~l~~n~~~~ 390 (408)
+++|. +++.....+..+++|++|++++|. +.+.....+..+++|+.|++++| +....-+.+ .++..|++++|++++
T Consensus 229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~~~l~~L~l~~n~l~~ 307 (336)
T 2ast_B 229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQINCSHFTT 307 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSEESCCCSCC
T ss_pred CCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHHhhCcceEEecccCcc
Confidence 77776 554555566677777777777773 33222234566777777777777 332221222 236677777777777
Q ss_pred CCCCCcCC
Q 037302 391 ENSTSSEN 398 (408)
Q Consensus 391 ~~~~~~~~ 398 (408)
..|..+.+
T Consensus 308 ~~~~~~~~ 315 (336)
T 2ast_B 308 IARPTIGN 315 (336)
T ss_dssp TTCSSCSS
T ss_pred ccCCcccc
Confidence 77766553
No 80
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=1.6e-21 Score=167.28 Aligned_cols=197 Identities=16% Similarity=0.178 Sum_probs=147.9
Q ss_pred CCCEEEecCcccccccCcccccccccCeEEccCCc-CCCCCCcccCCCCCccEEEccC-CcccccCCccccCCCCCCEEe
Q 037302 188 NLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNR-LDSPIPPTIGNLTNLTSLDLSS-NQLSGLLPREVGNLKYLDSLS 265 (408)
Q Consensus 188 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~ 265 (408)
+++.|++++|.+....+..+..+++|++++++++. +....+..+..+++|++|++++ +.+....+..|..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 56677777766665555566667777777777765 6555555667777888888877 677655666677778888888
Q ss_pred CCCCcccccCCccccCCCCCc---EEeCCCC-ccccCCCcCCcCCCCCc-EEEcCCCccCCcCCcccccCCCccEEEcCC
Q 037302 266 LDGNNLIGSIPPTIGYLTNLT---SLNLGYN-QLSSSIPPELMNCSQLQ-NLVLSHNTLSGIVPPEIGNLTHLRQLDLSH 340 (408)
Q Consensus 266 l~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 340 (408)
+++|.+.. .+. +..+++|+ +|++++| .++...+..+.++++|+ +|++++|+++.+....+.. ++|++|++++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK 188 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence 88877764 333 66777777 8888888 78766666788888888 9999888887555555555 7899999999
Q ss_pred cc-ccccCCcCCCCC-CCccEEeCCCCccCCcCCccccCCCeEEccCCc
Q 037302 341 NF-INGTIPSQLGYI-PNISAVDLSKNNLSGVVPASVRIIPKLIVSENN 387 (408)
Q Consensus 341 ~~-~~~~~~~~~~~~-~~L~~L~l~~~~l~~~~~~~~~~l~~l~l~~n~ 387 (408)
|+ +++..+..+..+ ++|+.|++++|+++.+.+..+.++++|++++++
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNTW 237 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTCSEEECTTC-
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCccccCChhHhccCceeeccCcc
Confidence 95 886667778888 899999999999988877888888888888775
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.87 E-value=1.2e-20 Score=166.24 Aligned_cols=205 Identities=25% Similarity=0.196 Sum_probs=170.6
Q ss_pred hhccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCc
Q 037302 158 TLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNL 237 (408)
Q Consensus 158 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L 237 (408)
.+..++++++++++++.+... +..+ .++++.|++++|.+....+..+..++.|+.|+++++.+..... ...+++|
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~i-p~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 79 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTAL-PPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVL 79 (290)
T ss_dssp EEECSTTCCEEECTTSCCSSC-CSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTC
T ss_pred cccccCCccEEECCCCCCCcC-CCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcC
Confidence 356688899999998887643 3322 3789999999999887777788889999999999998875433 2678899
Q ss_pred cEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCC
Q 037302 238 TSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHN 317 (408)
Q Consensus 238 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 317 (408)
+.|++++|.+. ..+..+..+++|+.|++++|.+....+..+..+++|++|++++|.++...+..+..+++|+.|++++|
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 99999999887 45566778899999999999988777778889999999999999999777777888999999999999
Q ss_pred ccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCC
Q 037302 318 TLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSG 369 (408)
Q Consensus 318 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 369 (408)
+++......+..+++|+.|++++|+++ .+|..+...++|+.+++++|++..
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 998777777888999999999999998 667777778899999999998864
No 82
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.86 E-value=2.2e-20 Score=164.63 Aligned_cols=204 Identities=31% Similarity=0.289 Sum_probs=172.6
Q ss_pred cccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccccccCccccccccc
Q 037302 134 EVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLG 213 (408)
Q Consensus 134 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 213 (408)
.+..++++++++++++.++. ++..+ .+.++.|++++|.+....+..+..+++|+.|++++|.+..... ...++.|
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~-ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 79 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTA-LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVL 79 (290)
T ss_dssp EEECSTTCCEEECTTSCCSS-CCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTC
T ss_pred cccccCCccEEECCCCCCCc-CCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcC
Confidence 45678899999999988874 44333 3689999999999877666788999999999999998875433 2678999
Q ss_pred CeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCC
Q 037302 214 GKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYN 293 (408)
Q Consensus 214 ~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 293 (408)
+.|+++++.+.. .+..+..+++|+.|++++|.++...+..|..+++|+.|++++|.+....+..+..+++|++|++++|
T Consensus 80 ~~L~Ls~N~l~~-l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 80 GTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CEEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCCc-CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 999999998874 5567788899999999999998777788899999999999999998777777888999999999999
Q ss_pred ccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCcccc
Q 037302 294 QLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFIN 344 (408)
Q Consensus 294 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 344 (408)
.++...+..+..+++|+.|++++|+++ ..+..+...++|+.+++++|+..
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 999777777888999999999999998 45666677789999999999876
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=7.4e-23 Score=186.73 Aligned_cols=255 Identities=23% Similarity=0.228 Sum_probs=135.1
Q ss_pred eecCCccccccCCCcCCCCCCCCEEEcCCCeecccCc----ccccCCC-CCceEeccCCcccCcCchhhccC-----CCC
Q 037302 96 LRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLP----QEVGNLK-NLLSLFLDNNNLTGPIPSTLYHL-----NQL 165 (408)
Q Consensus 96 L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~-----~~L 165 (408)
.+++.+.+....+..+...++|++|++++|.+....+ ..+..++ +|++|++++|.+.......+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 4566666665555555555668888888877765554 5566666 77777777777765555555543 677
Q ss_pred CEEEcCCCcCCCCCCcc----ccCC-CCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCC-CCCccE
Q 037302 166 SNLYLAYNNLVGPLPKE----VGNM-KNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGN-LTNLTS 239 (408)
Q Consensus 166 ~~L~l~~~~~~~~~~~~----~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~-~~~L~~ 239 (408)
++|++++|.+....+.. +..+ ++|++|++++|.+.+.....+.. .+.. +++|++
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~--------------------~l~~~~~~L~~ 142 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ--------------------AFSNLPASITS 142 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH--------------------HHTTSCTTCCE
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH--------------------HHHhCCCceeE
Confidence 77777777665433332 2333 56666666666655332222211 1112 234555
Q ss_pred EEccCCcccccCCc----cccCCC-CCCEEeCCCCcccccCCc----cccCC-CCCcEEeCCCCccccCCCc----CCcC
Q 037302 240 LDLSSNQLSGLLPR----EVGNLK-YLDSLSLDGNNLIGSIPP----TIGYL-TNLTSLNLGYNQLSSSIPP----ELMN 305 (408)
Q Consensus 240 L~l~~~~~~~~~~~----~~~~~~-~L~~L~l~~~~~~~~~~~----~~~~~-~~L~~L~l~~~~~~~~~~~----~~~~ 305 (408)
|++++|.+++.... .+...+ +|++|++++|.+.+.... .+..+ ++|++|++++|.+++.... .+..
T Consensus 143 L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~ 222 (362)
T 3goz_A 143 LNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS 222 (362)
T ss_dssp EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH
T ss_pred EEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc
Confidence 55555544432221 122333 555555555555433221 22233 3566666666655542221 2222
Q ss_pred -CCCCcEEEcCCCccCCcCC----cccccCCCccEEEcCCcccccc-------CCcCCCCCCCccEEeCCCCccCCc
Q 037302 306 -CSQLQNLVLSHNTLSGIVP----PEIGNLTHLRQLDLSHNFINGT-------IPSQLGYIPNISAVDLSKNNLSGV 370 (408)
Q Consensus 306 -~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~-------~~~~~~~~~~L~~L~l~~~~l~~~ 370 (408)
.++|++|++++|.+.+... ..+..+++|+.|++++|.+.+. ++..+..+++|+.|++++|++...
T Consensus 223 ~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 223 IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp SCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred CCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 2466666666666554322 2234456666666666663322 223455566666666766666544
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=3.3e-22 Score=180.76 Aligned_cols=102 Identities=25% Similarity=0.248 Sum_probs=58.3
Q ss_pred CCcEEeCCCceecccCcccccCC--CCCceeecCCccccccCCCcCCCCCCCCEEEcCCCeeccc-CcccccCCCCCceE
Q 037302 68 NLVELDLSNNILNGSIPLEFGNL--KDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGR-LPQEVGNLKNLLSL 144 (408)
Q Consensus 68 ~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L 144 (408)
.++.++++++.+. +..+..+ ++++.++++++.+....+. +..+++|++|++++|.+... .+..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 4667777766554 3334444 6677777777766544433 44566666666666665432 34445556666666
Q ss_pred eccCCcccCcCchhhccCCCCCEEEcCCC
Q 037302 145 FLDNNNLTGPIPSTLYHLNQLSNLYLAYN 173 (408)
Q Consensus 145 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 173 (408)
++++|.+++..+..+..+++|++|++++|
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~ 152 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGC 152 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCC
Confidence 66666554444444455555555555555
No 85
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.84 E-value=1.7e-19 Score=155.80 Aligned_cols=179 Identities=29% Similarity=0.293 Sum_probs=127.5
Q ss_pred CCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCC
Q 037302 189 LDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDG 268 (408)
Q Consensus 189 L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 268 (408)
.+.++++++.+... +..+ .+.++.|+++++.+....+..+..+++|++|++++|.+....+..+..+++|++|++++
T Consensus 16 ~~~l~~~~~~l~~~-p~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 16 KKEVDCQGKSLDSV-PSGI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GTEEECTTCCCSSC-CSCC--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CeEEecCCCCcccc-CCCC--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 34455555444422 2111 24566666766666666666667777777777777777766666677777788888877
Q ss_pred CcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCC
Q 037302 269 NNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIP 348 (408)
Q Consensus 269 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 348 (408)
+.+....+..+..+++|++|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 77776666667777888888888888876666667778888888888888876666677788888888888888886666
Q ss_pred cCCCCCCCccEEeCCCCccCCc
Q 037302 349 SQLGYIPNISAVDLSKNNLSGV 370 (408)
Q Consensus 349 ~~~~~~~~L~~L~l~~~~l~~~ 370 (408)
..+..+++|+.|++++|++...
T Consensus 173 ~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 173 GAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTCTTCCEEECCSCCBCTT
T ss_pred HHHhCCCCCCEEEeeCCceeCC
Confidence 6777888888888888888765
No 86
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.84 E-value=3.4e-19 Score=164.32 Aligned_cols=336 Identities=14% Similarity=0.051 Sum_probs=228.6
Q ss_pred CcccccccccCCCCCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcc
Q 037302 6 NAAELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPL 85 (408)
Q Consensus 6 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 85 (408)
+|+.|+..||.+|.+|+.+.+... +...-..+|..|.+|+.+.+.++ ++.+...+|.++..|+.+.+..+ +......
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~ 134 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVE 134 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred eEeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecce
Confidence 588899999999999999999743 44344567899999999999765 55566778899999998887765 3224556
Q ss_pred cccCCCCCceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCC
Q 037302 86 EFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQL 165 (408)
Q Consensus 86 ~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 165 (408)
+|.++..++....... ..+...+|.++++|+.+.+..+.. .....+|..+++|+.+.+..+ ++.+....+..+..|
T Consensus 135 aF~~~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L 210 (394)
T 4fs7_A 135 AFKGCDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSME-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILL 210 (394)
T ss_dssp TTTTCCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTCC-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTC
T ss_pred eeecccccccccCccc--cccchhhhcccCCCcEEecCCccc-eeccccccCCCCceEEEcCCC-ceEeCchhhcccccc
Confidence 6776654443333332 335567788899999999876532 255667888889999888765 444556677888888
Q ss_pred CEEEcCCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCC
Q 037302 166 SNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSN 245 (408)
Q Consensus 166 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 245 (408)
+.+.+..+... ..........|+.+.+.... .......+..+..++.+.+..+.. ......+..+..++.+.....
T Consensus 211 ~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~ 286 (394)
T 4fs7_A 211 ENMEFPNSLYY--LGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSV 286 (394)
T ss_dssp CBCCCCTTCCE--ECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSS
T ss_pred ceeecCCCceE--eehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCcc-eeeccccccccccceeccCce
Confidence 88877654321 11223445678888776532 223445667777888887765432 244556777778887777654
Q ss_pred cccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCc
Q 037302 246 QLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPP 325 (408)
Q Consensus 246 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 325 (408)
.+ ....+..+.+|+.+.+..+ +......++.+|.+|+.++|.++ ++.....+|.+|.+|+.+.+..+ ++.+...
T Consensus 287 ~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~ 360 (394)
T 4fs7_A 287 IV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGAN 360 (394)
T ss_dssp EE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTT
T ss_pred ee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHH
Confidence 32 3345667788888887654 33345566777888888888654 55566677888888888888765 5556677
Q ss_pred ccccCCCccEEEcCCccccccCCcCCCCCCCccEE
Q 037302 326 EIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAV 360 (408)
Q Consensus 326 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 360 (408)
+|.+|++|+.+++..+ +. ....+|.+|.+|+.+
T Consensus 361 aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 361 AFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp TBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred HhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 8888888888888655 22 234567777777765
No 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=2.5e-20 Score=165.86 Aligned_cols=193 Identities=26% Similarity=0.356 Sum_probs=109.3
Q ss_pred cCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCe
Q 037302 136 GNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGK 215 (408)
Q Consensus 136 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 215 (408)
..+++|++|+++++.+... + .+..+++|+.|++++|.+....+ +..+++|++|++++|.+.+. ..+..++.|+.
T Consensus 38 ~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~ 111 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKT 111 (308)
T ss_dssp HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred HHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCE
Confidence 4466777777777766532 2 45667777777777776654322 66667777777777666532 24555666666
Q ss_pred EEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCcc
Q 037302 216 LDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQL 295 (408)
Q Consensus 216 l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 295 (408)
|++++|.+.... .+..+++|++|++++|.+.+... +..+++|+.|++++|.+.+... +..+++|++|++++|.+
T Consensus 112 L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 112 LDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI 185 (308)
T ss_dssp EECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCcc
Confidence 666666555421 25555666666666665543222 4455566666666665543221 45555666666666655
Q ss_pred ccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCcccc
Q 037302 296 SSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFIN 344 (408)
Q Consensus 296 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 344 (408)
++..+ +..+++|++|++++|++.+.. .+..+++|+.|++++|+++
T Consensus 186 ~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 186 SDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred CcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence 53221 455555666666666555332 3455555666666665555
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.84 E-value=2.3e-19 Score=154.89 Aligned_cols=178 Identities=26% Similarity=0.299 Sum_probs=156.8
Q ss_pred cccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeC
Q 037302 211 NLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNL 290 (408)
Q Consensus 211 ~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 290 (408)
...+.++++++.+... |..+. +.++.|+++++.+....+..+..+++|++|+++++.+....+..+..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~~~-p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSV-PSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSSC-CSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCcccc-CCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 4567899998887753 33333 68999999999998877788999999999999999998777777899999999999
Q ss_pred CCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCc
Q 037302 291 GYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGV 370 (408)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 370 (408)
++|.++...+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++.+.
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 99999987778889999999999999999977777789999999999999999977777899999999999999999998
Q ss_pred CCcccc---CCCeEEccCCccCCC
Q 037302 371 VPASVR---IIPKLIVSENNLELE 391 (408)
Q Consensus 371 ~~~~~~---~l~~l~l~~n~~~~~ 391 (408)
.+..+. ++++|++++|++++.
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CHHHHhCCCCCCEEEeeCCceeCC
Confidence 886665 566999999999876
No 89
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.84 E-value=9.2e-22 Score=179.49 Aligned_cols=256 Identities=21% Similarity=0.187 Sum_probs=163.5
Q ss_pred EEeCCCceecccCcccccCCCCCceeecCCccccccCC----CcCCCCC-CCCEEEcCCCeecccCcccccCC-----CC
Q 037302 71 ELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIP----SSIGNLT-NLTHLDLSLNQLSGRLPQEVGNL-----KN 140 (408)
Q Consensus 71 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~----~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~l-----~~ 140 (408)
.+.++.+.+.+..|..+...++|++|++++|.+....+ ..+..++ +|++|++++|.+....+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 35677787776667766667779999999999987766 6677888 99999999999987666666654 99
Q ss_pred CceEeccCCcccCcCchhhc----cC-CCCCEEEcCCCcCCCCCCcc----ccC-CCCCCEEEecCcccccccCcccccc
Q 037302 141 LLSLFLDNNNLTGPIPSTLY----HL-NQLSNLYLAYNNLVGPLPKE----VGN-MKNLDSLLLNRNSLTGPIPSTIGYL 210 (408)
Q Consensus 141 L~~L~l~~~~~~~~~~~~~~----~~-~~L~~L~l~~~~~~~~~~~~----~~~-~~~L~~L~l~~~~~~~~~~~~~~~~ 210 (408)
|++|++++|.++......+. .+ ++|++|++++|.+....... +.. .++|++|++++|.+.+.....+.
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~-- 159 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI-- 159 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH--
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH--
Confidence 99999999998866555443 44 89999999999987554433 333 35888888888877643222111
Q ss_pred cccCeEEccCCcCCCCCCcccCCCC-CccEEEccCCcccccCCc----cccCC-CCCCEEeCCCCccccc----CCcccc
Q 037302 211 NLGGKLDLSHNRLDSPIPPTIGNLT-NLTSLDLSSNQLSGLLPR----EVGNL-KYLDSLSLDGNNLIGS----IPPTIG 280 (408)
Q Consensus 211 ~~L~~l~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~----~~~~~-~~L~~L~l~~~~~~~~----~~~~~~ 280 (408)
..+...+ +|++|++++|.+++.... .+..+ ++|++|++++|.+.+. .+..+.
T Consensus 160 ------------------~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~ 221 (362)
T 3goz_A 160 ------------------QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFS 221 (362)
T ss_dssp ------------------HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred ------------------HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHh
Confidence 0111111 455555555544433322 22233 3566666665555432 112222
Q ss_pred C-CCCCcEEeCCCCccccCCC----cCCcCCCCCcEEEcCCCccCCcCC-------cccccCCCccEEEcCCcccccc
Q 037302 281 Y-LTNLTSLNLGYNQLSSSIP----PELMNCSQLQNLVLSHNTLSGIVP-------PEIGNLTHLRQLDLSHNFINGT 346 (408)
Q Consensus 281 ~-~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~-------~~~~~~~~L~~L~l~~~~~~~~ 346 (408)
. .++|++|++++|.+++... ..+..+++|++|++++|.+.++.. ..+..+++|+.|++++|++.+.
T Consensus 222 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 222 SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred cCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 2 3466667776666654332 234556677777777776433222 2455667777788888777655
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=2.7e-20 Score=166.07 Aligned_cols=201 Identities=24% Similarity=0.248 Sum_probs=100.9
Q ss_pred CCCCCEEEcCCCcCCCCCCccc--cCCCCCCEEEecCcccccccC----cccccccccCeEEccCCcCCCCCCcccCCCC
Q 037302 162 LNQLSNLYLAYNNLVGPLPKEV--GNMKNLDSLLLNRNSLTGPIP----STIGYLNLGGKLDLSHNRLDSPIPPTIGNLT 235 (408)
Q Consensus 162 ~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~ 235 (408)
+++|++|++++|.+....+..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+....+..+..++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 4557777777776665555555 666777777777776654222 2223456666666666666555555566666
Q ss_pred CccEEEccCCccccc----CCccccCCCCCCEEeCCCCcccccCC--c-cccCCCCCcEEeCCCCccccCCCcCCcCC--
Q 037302 236 NLTSLDLSSNQLSGL----LPREVGNLKYLDSLSLDGNNLIGSIP--P-TIGYLTNLTSLNLGYNQLSSSIPPELMNC-- 306 (408)
Q Consensus 236 ~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~--~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-- 306 (408)
+|++|++++|.+... ....+..+++|++|++++|.+..... . .+..+++|++|++++|.+++..+..+..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 666666666654321 11222345555555555555532111 0 12344555555555555554433333333
Q ss_pred -CCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCcc
Q 037302 307 -SQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNL 367 (408)
Q Consensus 307 -~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 367 (408)
++|++|++++|+++ ..+..+. ++|++|++++|++++. |. +..+++|+.|++++|++
T Consensus 250 ~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 250 SSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPF 306 (310)
T ss_dssp CTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTT
T ss_pred cCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCC
Confidence 34555555555444 2222221 3444555555544422 21 23344444444444444
No 91
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.83 E-value=1e-22 Score=187.59 Aligned_cols=258 Identities=19% Similarity=0.209 Sum_probs=138.0
Q ss_pred CceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcc----cccCCCCCceEeccCCccc---CcCchh-------
Q 037302 93 LDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQ----EVGNLKNLLSLFLDNNNLT---GPIPST------- 158 (408)
Q Consensus 93 L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~l~~~~~~---~~~~~~------- 158 (408)
|+...+....+. ..+..+..+++|++|++++|.+....+. .+..+++|++|+++++.+. ...+..
T Consensus 11 L~~~~l~~~~~~-~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~ 89 (386)
T 2ca6_A 11 LKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA 89 (386)
T ss_dssp CEESSCCSHHHH-TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHH
T ss_pred cccCCCCHHHHH-HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHH
Confidence 333334333333 2334566677888888888877644332 3556777888888775432 222222
Q ss_pred hccCCCCCEEEcCCCcCCCC----CCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCC
Q 037302 159 LYHLNQLSNLYLAYNNLVGP----LPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNL 234 (408)
Q Consensus 159 ~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~ 234 (408)
+..+++|++|++++|.+... ++..+..+++|++|++++|.+.+.....+... +..+
T Consensus 90 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~--------------------l~~l 149 (386)
T 2ca6_A 90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA--------------------LQEL 149 (386)
T ss_dssp HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHH--------------------HHHH
T ss_pred HhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHH--------------------HHHH
Confidence 24566777777777666542 33345556666666666665542211111111 1111
Q ss_pred ---------CCccEEEccCCccccc-CC---ccccCCCCCCEEeCCCCccccc-----CCccccCCCCCcEEeCCCCccc
Q 037302 235 ---------TNLTSLDLSSNQLSGL-LP---REVGNLKYLDSLSLDGNNLIGS-----IPPTIGYLTNLTSLNLGYNQLS 296 (408)
Q Consensus 235 ---------~~L~~L~l~~~~~~~~-~~---~~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~ 296 (408)
++|++|++++|.++.. .+ ..+..+++|+.|++++|.+... .+..+..+++|++|++++|.++
T Consensus 150 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~ 229 (386)
T 2ca6_A 150 AVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT 229 (386)
T ss_dssp HHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCH
T ss_pred hhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCC
Confidence 4555555555554421 11 2344455666666666655421 1124555666666666666664
Q ss_pred ----cCCCcCCcCCCCCcEEEcCCCccCCc----CCcccc--cCCCccEEEcCCccccc----cCCcCC-CCCCCccEEe
Q 037302 297 ----SSIPPELMNCSQLQNLVLSHNTLSGI----VPPEIG--NLTHLRQLDLSHNFING----TIPSQL-GYIPNISAVD 361 (408)
Q Consensus 297 ----~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~--~~~~L~~L~l~~~~~~~----~~~~~~-~~~~~L~~L~ 361 (408)
...+..+..+++|++|++++|.+.+. .+..+. .+++|+.|++++|.+++ .+|..+ .++++|+.|+
T Consensus 230 ~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~ 309 (386)
T 2ca6_A 230 HLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE 309 (386)
T ss_dssp HHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEE
T ss_pred cHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEE
Confidence 23334455666666666666665533 223332 25667777777776665 244444 3466677777
Q ss_pred CCCCccCCcC
Q 037302 362 LSKNNLSGVV 371 (408)
Q Consensus 362 l~~~~l~~~~ 371 (408)
+++|++.+..
T Consensus 310 l~~N~l~~~~ 319 (386)
T 2ca6_A 310 LNGNRFSEED 319 (386)
T ss_dssp CTTSBSCTTS
T ss_pred ccCCcCCcch
Confidence 7777666544
No 92
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=1.3e-19 Score=151.94 Aligned_cols=180 Identities=26% Similarity=0.235 Sum_probs=137.2
Q ss_pred eEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCc
Q 037302 215 KLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQ 294 (408)
Q Consensus 215 ~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 294 (408)
.++.+++.+... +..+ .++|++|+++++.+.......+..+++|++|+++++.+.......+..+++|++|++++|.
T Consensus 11 ~v~c~~~~l~~~-p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 11 TVECYSQGRTSV-PTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp EEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCccCC-CCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 455555544432 2222 3578888888887776666667778888888888888776656667788888888888888
Q ss_pred cccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCCcc
Q 037302 295 LSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPAS 374 (408)
Q Consensus 295 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~ 374 (408)
++...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++.+..
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~--- 164 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC--- 164 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCT---
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCC---
Confidence 88666666778888888888888888776667788888999999988888666666788888999999998887543
Q ss_pred ccCCCeEEccCCccCCCCCCCcCCCCC
Q 037302 375 VRIIPKLIVSENNLELENSTSSENAPP 401 (408)
Q Consensus 375 ~~~l~~l~l~~n~~~~~~~~~~~~~~~ 401 (408)
.+++.|+++.|.++|.+|+.+.+++.
T Consensus 165 -~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 165 -PGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp -TTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred -CCHHHHHHHHHhCCceeeccCccccC
Confidence 36778888889998899888887765
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.83 E-value=3.1e-20 Score=165.65 Aligned_cols=226 Identities=20% Similarity=0.201 Sum_probs=168.5
Q ss_pred CCCCEEEcCCCcCCCCCC---ccccCCCCCCEEEecCcccccccCccc--ccccccCeEEccCCcCCCCCC----cccCC
Q 037302 163 NQLSNLYLAYNNLVGPLP---KEVGNMKNLDSLLLNRNSLTGPIPSTI--GYLNLGGKLDLSHNRLDSPIP----PTIGN 233 (408)
Q Consensus 163 ~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~l~l~~~~~~~~~~----~~l~~ 233 (408)
..++.+.+..+.+..... ..+..+++|++|++++|.+.+..+..+ ..+++|+.|++++|.+....+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 446666666655432100 012234669999999998887766666 788999999999998875433 23346
Q ss_pred CCCccEEEccCCcccccCCccccCCCCCCEEeCCCCccccc----CCccccCCCCCcEEeCCCCccccCCCc---CCcCC
Q 037302 234 LTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGS----IPPTIGYLTNLTSLNLGYNQLSSSIPP---ELMNC 306 (408)
Q Consensus 234 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~ 306 (408)
+++|++|++++|.+....+..++.+++|++|++++|.+... ....+..+++|++|++++|.++..... .+..+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 78999999999998877777888899999999999986432 223346788999999999988632111 24567
Q ss_pred CCCcEEEcCCCccCCcCCcccccC---CCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCc-CCccccCCCeEE
Q 037302 307 SQLQNLVLSHNTLSGIVPPEIGNL---THLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGV-VPASVRIIPKLI 382 (408)
Q Consensus 307 ~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~l~~l~ 382 (408)
++|++|++++|.+.+..+..+..+ ++|++|++++|+++ .+|..+. ++|+.|++++|+++++ .+..+.++++|+
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~ 300 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQPDELPEVDNLT 300 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCCTTSCCCCSCEE
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCchhhhCCCccEEE
Confidence 899999999999887766666655 69999999999998 5566553 7999999999999885 456677888999
Q ss_pred ccCCccCCC
Q 037302 383 VSENNLELE 391 (408)
Q Consensus 383 l~~n~~~~~ 391 (408)
+++|+++.+
T Consensus 301 L~~N~l~~~ 309 (310)
T 4glp_A 301 LDGNPFLVP 309 (310)
T ss_dssp CSSTTTSCC
T ss_pred CcCCCCCCC
Confidence 999998754
No 94
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.83 E-value=1.8e-22 Score=185.94 Aligned_cols=186 Identities=18% Similarity=0.184 Sum_probs=142.6
Q ss_pred ccccccCeEEccCCcCCCC----CCcccCCCCCccEEEccCCcccccCCccc----cCC---------CCCCEEeCCCCc
Q 037302 208 GYLNLGGKLDLSHNRLDSP----IPPTIGNLTNLTSLDLSSNQLSGLLPREV----GNL---------KYLDSLSLDGNN 270 (408)
Q Consensus 208 ~~~~~L~~l~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~----~~~---------~~L~~L~l~~~~ 270 (408)
..+++|++|++++|.+... .+..+..+++|++|++++|.++......+ ..+ ++|+.|++++|.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 5567777777777766652 34456678889999999988764433333 333 899999999999
Q ss_pred cccc-CC---ccccCCCCCcEEeCCCCccccC-----CCcCCcCCCCCcEEEcCCCccC----CcCCcccccCCCccEEE
Q 037302 271 LIGS-IP---PTIGYLTNLTSLNLGYNQLSSS-----IPPELMNCSQLQNLVLSHNTLS----GIVPPEIGNLTHLRQLD 337 (408)
Q Consensus 271 ~~~~-~~---~~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~L~~L~ 337 (408)
+... .+ ..+..+++|++|++++|.++.. .+..+..+++|++|++++|.++ ...+..+..+++|++|+
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ 250 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 250 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence 8633 22 3566889999999999988732 2336778999999999999985 35566788899999999
Q ss_pred cCCcccccc----CCcCC--CCCCCccEEeCCCCccCC----cCCcc----ccCCCeEEccCCccCCCCC
Q 037302 338 LSHNFINGT----IPSQL--GYIPNISAVDLSKNNLSG----VVPAS----VRIIPKLIVSENNLELENS 393 (408)
Q Consensus 338 l~~~~~~~~----~~~~~--~~~~~L~~L~l~~~~l~~----~~~~~----~~~l~~l~l~~n~~~~~~~ 393 (408)
+++|.+++. ++..+ ..+++|+.|++++|++.. ..|.. +.++++|++++|++++..|
T Consensus 251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 999999865 45555 348999999999999998 35543 4788899999999987764
No 95
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.83 E-value=5.8e-20 Score=157.52 Aligned_cols=197 Identities=18% Similarity=0.207 Sum_probs=111.0
Q ss_pred CCceEeccCCcccCcCchhhccCCCCCEEEcCCCc-CCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEc
Q 037302 140 NLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNN-LVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDL 218 (408)
Q Consensus 140 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l 218 (408)
++++|+++++.++......+..+++|++|++++|. +....+..|..+++|++|+++++
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~--------------------- 90 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT--------------------- 90 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEE---------------------
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCC---------------------
Confidence 45555555555554443444455555555555553 33333334444455555555440
Q ss_pred cCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCC---EEeCCCC-cccccCCccccCCCCCc-EEeCCCC
Q 037302 219 SHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLD---SLSLDGN-NLIGSIPPTIGYLTNLT-SLNLGYN 293 (408)
Q Consensus 219 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~~ 293 (408)
+.+....+..+..+++|++|++++|.+.. .+. +..+++|+ .|++++| .+.......+..+++|+ +|++++|
T Consensus 91 --n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n 166 (239)
T 2xwt_C 91 --RNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN 166 (239)
T ss_dssp --TTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC
T ss_pred --CCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC
Confidence 44443333444455555555555555543 222 44555555 6666666 55544445566667777 7777777
Q ss_pred ccccCCCcCCcCCCCCcEEEcCCCc-cCCcCCcccccC-CCccEEEcCCccccccCCcCCCCCCCccEEeCCCC
Q 037302 294 QLSSSIPPELMNCSQLQNLVLSHNT-LSGIVPPEIGNL-THLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKN 365 (408)
Q Consensus 294 ~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 365 (408)
.++......+.. ++|++|++++|+ ++.+.+..|..+ ++|+.|++++|+++.. |.. .+++|+.|.++++
T Consensus 167 ~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 167 GFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKELIARNT 236 (239)
T ss_dssp CCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEEECTTC
T ss_pred CCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCceeeccCc
Confidence 766444444444 677777777774 665556667777 7777777777777743 322 4567777777765
No 96
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=7.7e-20 Score=162.73 Aligned_cols=197 Identities=29% Similarity=0.380 Sum_probs=165.3
Q ss_pred hccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCcc
Q 037302 159 LYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLT 238 (408)
Q Consensus 159 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~ 238 (408)
...+++|+.|+++++.+... + .+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+... ..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence 45688999999999988753 3 57889999999999999875443 88899999999999998764 3688899999
Q ss_pred EEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCc
Q 037302 239 SLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNT 318 (408)
Q Consensus 239 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 318 (408)
+|++++|.+.+.. .+..+++|+.|++++|.+..... +..+++|++|++++|.+++..+ +..+++|+.|++++|.
T Consensus 111 ~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 111 TLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNK 184 (308)
T ss_dssp EEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCc
Confidence 9999999887532 37889999999999998875433 7889999999999999985433 7889999999999999
Q ss_pred cCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcC
Q 037302 319 LSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVV 371 (408)
Q Consensus 319 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 371 (408)
+.+.. .+..+++|++|++++|++++..+ +..+++|+.|++++|++.+..
T Consensus 185 l~~~~--~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 185 ISDIS--PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp CCCCG--GGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECCC
T ss_pred cCcCh--hhcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecCC
Confidence 98553 37889999999999999986553 788999999999999998643
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=3.7e-19 Score=149.12 Aligned_cols=179 Identities=28% Similarity=0.209 Sum_probs=138.2
Q ss_pred ccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEe
Q 037302 210 LNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLN 289 (408)
Q Consensus 210 ~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 289 (408)
.+.+++|+++++.+....+..+..+++|++|++++|.+.......+..+++|++|++++|.+.......+..+++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 34677777777777665556667778888888888877766566677788888888888887766666677888888999
Q ss_pred CCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCC
Q 037302 290 LGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSG 369 (408)
Q Consensus 290 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 369 (408)
+++|.++...+..+..+++|++|++++|.+++.....+..+++|+.|++++|++. ..+++|+.|++..|++.+
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSG 179 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTT
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCc
Confidence 9888888666666788889999999999888776667888889999999999665 356788999999999999
Q ss_pred cCCccccCCCeEEccCCccCCCCCCCc
Q 037302 370 VVPASVRIIPKLIVSENNLELENSTSS 396 (408)
Q Consensus 370 ~~~~~~~~l~~l~l~~n~~~~~~~~~~ 396 (408)
.+|..++.+.. ++..+...+..+.++
T Consensus 180 ~ip~~~~~l~~-~~~~C~~~~~~~~~~ 205 (208)
T 2o6s_A 180 VVRNSAGSVAP-DSAKCSGSGKPVRSI 205 (208)
T ss_dssp TBBCTTSSBCT-TCSBBTTTCCBGGGC
T ss_pred eeeccCccccC-CccccccCCCcceee
Confidence 88888887753 555566666666665
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.77 E-value=1.5e-17 Score=150.74 Aligned_cols=238 Identities=18% Similarity=0.107 Sum_probs=133.9
Q ss_pred ceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccccc-cCcccccccccCe-EEcc
Q 037302 142 LSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGP-IPSTIGYLNLGGK-LDLS 219 (408)
Q Consensus 142 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~-l~l~ 219 (408)
++++.+++.++ .++..+ .+++++|++++|.+......+|..+++|+.|++++|.+.+. ....|..++.+.. +.+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 45566666665 334333 25677788877777655555677777788888777776443 2345566666554 3344
Q ss_pred CCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCC-cccccCCccccCC-CCCcEEeCCCCcccc
Q 037302 220 HNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGN-NLIGSIPPTIGYL-TNLTSLNLGYNQLSS 297 (408)
Q Consensus 220 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~-~~L~~L~l~~~~~~~ 297 (408)
++++....+..+..+++|++|++++|.+.......+....++..+++.++ .+.......+... ..++.|++++|.++.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 56666555666677777777777777666544444445556666666443 3333333333333 346666777766664
Q ss_pred CCCcCCcCCCCCcEEEcCC-CccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCC--cc
Q 037302 298 SIPPELMNCSQLQNLVLSH-NTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVP--AS 374 (408)
Q Consensus 298 ~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~ 374 (408)
.....+ ...+|+++.+.+ |.++.+...+|..+++|++|++++|+++...+..+ .+|+.|.+.++.-....| +.
T Consensus 169 i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~lP~l~~ 244 (350)
T 4ay9_X 169 IHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKKLPTLEK 244 (350)
T ss_dssp ECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCCCCTTT
T ss_pred CChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcCcCCCchh
Confidence 433333 335566666654 44554444556666666777777666663333233 344444444443222233 34
Q ss_pred ccCCCeEEccCC
Q 037302 375 VRIIPKLIVSEN 386 (408)
Q Consensus 375 ~~~l~~l~l~~n 386 (408)
+.+|+.+++.++
T Consensus 245 l~~L~~l~l~~~ 256 (350)
T 4ay9_X 245 LVALMEASLTYP 256 (350)
T ss_dssp CCSCCEEECSCH
T ss_pred CcChhhCcCCCC
Confidence 555556666543
No 99
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.76 E-value=5.7e-17 Score=149.42 Aligned_cols=310 Identities=11% Similarity=0.020 Sum_probs=168.8
Q ss_pred hhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCceeecCCccccccCCCcCCCCCC
Q 037302 37 SEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTN 116 (408)
Q Consensus 37 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~ 116 (408)
.+|..|.+|+++.+..+ ++.+...+|.+|.+|+.+++..+ +..+...+|.++..|+.+.+..+ +..+...+|.++..
T Consensus 65 ~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~ 141 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDF 141 (394)
T ss_dssp TTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCC
T ss_pred HHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccc
Confidence 45667777777777643 44455666777777777777654 33344556667777777666544 33345555655544
Q ss_pred CCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecC
Q 037302 117 LTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNR 196 (408)
Q Consensus 117 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 196 (408)
++......... ....+|..+++|+.+.+..+. ..+....|..+++|+.+.+..+ +......+|..+..|+.+.+..
T Consensus 142 ~~~~~~~~~~~--i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~ 217 (394)
T 4fs7_A 142 KEITIPEGVTV--IGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPN 217 (394)
T ss_dssp SEEECCTTCCE--ECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCT
T ss_pred cccccCccccc--cchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCC
Confidence 33332222211 334566677777777776543 2244556666777777766544 2223334566666666665544
Q ss_pred cccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCC
Q 037302 197 NSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIP 276 (408)
Q Consensus 197 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 276 (408)
+... ....+.....++.+.+... ...+....+..+..++.+.+..+... .....|..+..++.+......+ ..
T Consensus 218 ~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~ 290 (394)
T 4fs7_A 218 SLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PE 290 (394)
T ss_dssp TCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CT
T ss_pred CceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee---cc
Confidence 3221 1222233445666655432 22233345556666666666554322 3444555566666665544332 22
Q ss_pred ccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCC
Q 037302 277 PTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPN 356 (408)
Q Consensus 277 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 356 (408)
..+..+.+|+.+.+.++ +......+|.+|.+|+.+.+..+ ++.+...+|.+|++|+.+.+..+ ++.....+|.+|.+
T Consensus 291 ~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~ 367 (394)
T 4fs7_A 291 KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCIN 367 (394)
T ss_dssp TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTT
T ss_pred ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCC
Confidence 34555666666666543 33344555666666666666543 44455556666666666666555 44445556666666
Q ss_pred ccEEeCC
Q 037302 357 ISAVDLS 363 (408)
Q Consensus 357 L~~L~l~ 363 (408)
|+.+++.
T Consensus 368 L~~i~lp 374 (394)
T 4fs7_A 368 LKKVELP 374 (394)
T ss_dssp CCEEEEE
T ss_pred CCEEEEC
Confidence 6666654
No 100
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.75 E-value=3.6e-16 Score=144.12 Aligned_cols=337 Identities=10% Similarity=0.103 Sum_probs=176.7
Q ss_pred CcccccccccCCCC-CCcEEEcCCCccccccchhhccCCCCcEEeCCCCc---CCCCCcccccCCCCCcEEeCCCceecc
Q 037302 6 NAAELSQLNFTCFP-NLESIIIPYTLLSGRIPSEIGALSKLEELALPYNS---LTGTIPAEIGSLRNLVELDLSNNILNG 81 (408)
Q Consensus 6 ~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~~~~~~~L~~L~l~~~~~~~ 81 (408)
.|+.|+..||.++. .|+.+.+... +...-..+|..|.+|+.+.+..+. ++.+...+|..+..|+.+.+..+ +..
T Consensus 50 ~Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~ 127 (394)
T 4gt6_A 50 PVSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTE 127 (394)
T ss_dssp EEEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSE
T ss_pred eeeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cce
Confidence 47788888888875 5888888643 333334567788888888776542 44455566777777777666554 222
Q ss_pred cCcccccCCCCCceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhcc
Q 037302 82 SIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYH 161 (408)
Q Consensus 82 ~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 161 (408)
....+|..+.+|+.+.+... +..+....|..+..|+.+.+..+ +..+...+|.. ..|+.+.+..... ......+..
T Consensus 128 I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~-~i~~~af~~ 203 (394)
T 4gt6_A 128 IDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVT-RIGTNAFSE 203 (394)
T ss_dssp ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCC-EECTTTTTT
T ss_pred ehhhhhhhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCccc-ccccchhhh
Confidence 44556667777777777543 33355556666777777766554 22233344433 4566666654322 234445555
Q ss_pred CCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEE
Q 037302 162 LNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLD 241 (408)
Q Consensus 162 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~ 241 (408)
+..++................+......... ...+.....+..+.+.. .+..+...+|..|..|+.+.
T Consensus 204 c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~ 271 (394)
T 4gt6_A 204 CFALSTITSDSESYPAIDNVLYEKSANGDYA-----------LIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVK 271 (394)
T ss_dssp CTTCCEEEECCSSSCBSSSCEEEECTTSCEE-----------EEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEE
T ss_pred ccccceecccccccccccceeeccccccccc-----------ccccccccccceEEcCC-cceEcccceeeecccccEEe
Confidence 6666555543322211000000000000000 00011112223333322 11222344566677777777
Q ss_pred ccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCC
Q 037302 242 LSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSG 321 (408)
Q Consensus 242 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 321 (408)
+..... .....+|.+++.|+.+.+... +......+|.+|.+|+.+.|.++ ++.....+|.+|.+|+++.+..+ ++.
T Consensus 272 lp~~~~-~I~~~aF~~c~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~ 347 (394)
T 4gt6_A 272 MPDSVV-SIGTGAFMNCPALQDIEFSSR-ITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTK 347 (394)
T ss_dssp CCTTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCB
T ss_pred cccccc-eecCcccccccccccccCCCc-ccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCE
Confidence 765432 244556666777777777532 33344556667777777777553 44455566777777777777543 444
Q ss_pred cCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCcc
Q 037302 322 IVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNL 367 (408)
Q Consensus 322 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 367 (408)
+...+|.+|++|+.+++.++.... .++..+.+|+.+.+..+.+
T Consensus 348 I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 348 IPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred EhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 556677777777777777664331 3455666676666655443
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=1.5e-17 Score=146.66 Aligned_cols=176 Identities=31% Similarity=0.406 Sum_probs=140.0
Q ss_pred ccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCC
Q 037302 183 VGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLD 262 (408)
Q Consensus 183 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 262 (408)
+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+....+ +..+++|+.|++++|.+.+. ..+..+++|+
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~ 115 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLK 115 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCC
T ss_pred hhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCC
Confidence 45678899999999887644 247778899999999988876543 78889999999999888743 3477888999
Q ss_pred EEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCcc
Q 037302 263 SLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNF 342 (408)
Q Consensus 263 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 342 (408)
.|++++|.+... ..+..+++|++|++++|.++.. ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.
T Consensus 116 ~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 116 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCc
Confidence 999999888753 4577888999999999988854 567788899999999998875543 7888899999999998
Q ss_pred ccccCCcCCCCCCCccEEeCCCCccCCcCC
Q 037302 343 INGTIPSQLGYIPNISAVDLSKNNLSGVVP 372 (408)
Q Consensus 343 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 372 (408)
+++. + .+..+++|+.|++++|++.....
T Consensus 190 i~~l-~-~l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 190 ISDL-R-ALAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp CCBC-G-GGTTCTTCSEEEEEEEEEECCCE
T ss_pred CCCC-h-hhccCCCCCEEECcCCcccCCcc
Confidence 8854 3 37788899999999998876443
No 102
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.75 E-value=1.8e-18 Score=155.51 Aligned_cols=103 Identities=19% Similarity=0.226 Sum_probs=80.7
Q ss_pred CCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCc-EEeCCCCccccCCCcCCcCCCCCcEE
Q 037302 234 LTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLT-SLNLGYNQLSSSIPPELMNCSQLQNL 312 (408)
Q Consensus 234 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L 312 (408)
|++|+.++++++.+......+|.+|.+|+++++.++ +......+|.+|++|+ .+++.+ .++.....+|.+|++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 677888888877777677777888888888888776 5555667788888888 888877 6666777788888888888
Q ss_pred EcCCCccCCcCCcccccCCCccEEEc
Q 037302 313 VLSHNTLSGIVPPEIGNLTHLRQLDL 338 (408)
Q Consensus 313 ~l~~~~~~~~~~~~~~~~~~L~~L~l 338 (408)
+++++.++.+...+|.+|++|+.++.
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EeCCCccCccchhhhcCCcchhhhcc
Confidence 88888887777788888888888764
No 103
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.74 E-value=2.4e-18 Score=154.68 Aligned_cols=126 Identities=16% Similarity=0.069 Sum_probs=92.4
Q ss_pred CCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCc-EEE
Q 037302 235 TNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQ-NLV 313 (408)
Q Consensus 235 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~-~L~ 313 (408)
.++..+.+.+.-...........+++|+.++++++.+......+|.+|++|+.+++.++ +......+|.+|++|+ .+.
T Consensus 202 ~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~ 280 (329)
T 3sb4_A 202 RDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLE 280 (329)
T ss_dssp GGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEE
T ss_pred cccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEE
Confidence 45555665554222111111224788888888888777677778888888888888887 6667777888888888 888
Q ss_pred cCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeC
Q 037302 314 LSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDL 362 (408)
Q Consensus 314 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 362 (408)
+.+ .++.+...+|.+|++|+.+++.++.++...+.+|.+|++|+.+..
T Consensus 281 l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 281 LPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp ECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred Ecc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 888 676677788888888888888888888777778888888888753
No 104
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.74 E-value=1.1e-16 Score=146.96 Aligned_cols=269 Identities=10% Similarity=0.087 Sum_probs=161.5
Q ss_pred cCCCCCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCc
Q 037302 15 FTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLD 94 (408)
Q Consensus 15 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 94 (408)
+..+..++.+.+.+. +...-..+|..+ +|+.+.+..+ ++.+...+|.++ +|+.+.+.. .+..+...+|.+|++|+
T Consensus 109 ~~~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~ 183 (401)
T 4fdw_A 109 TEILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLK 183 (401)
T ss_dssp EEECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCC
T ss_pred EEecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCC
Confidence 334455566665432 222223344443 5666666544 443445555553 466666664 33334455666666666
Q ss_pred eeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCc
Q 037302 95 ALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNN 174 (408)
Q Consensus 95 ~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 174 (408)
.+++..+.++.+....|. +.+|+.+.+..+ +..+...+|..+++|+.+.+..+ ++.+...+|.. .+|+.+.+.. .
T Consensus 184 ~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~ 258 (401)
T 4fdw_A 184 KADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-G 258 (401)
T ss_dssp EEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-T
T ss_pred eeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-C
Confidence 666666666655555555 466666666543 44445556666666777666653 33344455555 5677766633 2
Q ss_pred CCCCCCccccCCCCCCEEEecCcccc-----cccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccc
Q 037302 175 LVGPLPKEVGNMKNLDSLLLNRNSLT-----GPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSG 249 (408)
Q Consensus 175 ~~~~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 249 (408)
+......+|..|++|+.+.+.++... ......|..|+.|+.+.+.. .+..+...+|..|++|+.+.+..+ +..
T Consensus 259 i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~ 336 (401)
T 4fdw_A 259 VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQ 336 (401)
T ss_dssp CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCE
T ss_pred ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccE
Confidence 33334456677777777777665443 24456677778888887774 355556677888888888888654 555
Q ss_pred cCCccccCCCCCCEEeCCCCcccccCCccccCCC-CCcEEeCCCCccc
Q 037302 250 LLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLT-NLTSLNLGYNQLS 296 (408)
Q Consensus 250 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~ 296 (408)
....+|.++ +|+.+.+.++.........+..++ +++.+.+..+.+.
T Consensus 337 I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 337 INFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp ECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred EcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 666778888 888888888776655555566664 6778888766544
No 105
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.74 E-value=2.8e-16 Score=144.17 Aligned_cols=265 Identities=11% Similarity=0.105 Sum_probs=147.6
Q ss_pred CCCCCceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEE
Q 037302 89 NLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNL 168 (408)
Q Consensus 89 ~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 168 (408)
.+..++.+.+... ++.+...+|.++ +|+.+.+..+ +..+...+|..+ +|+.+.+.. .+..+...+|..|++|+.+
T Consensus 111 ~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 111 ILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp ECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred ecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence 4466777777654 444556666664 6777777655 444455566653 577777764 3444555566777777777
Q ss_pred EcCCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCccc
Q 037302 169 YLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLS 248 (408)
Q Consensus 169 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 248 (408)
++..+.+.......|. +.+|+++.+..+ +.......|..++.|+.+.+..+ +..+...+|.. ++|+.+.+.. .+.
T Consensus 186 ~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~ 260 (401)
T 4fdw_A 186 DLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVT 260 (401)
T ss_dssp ECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCC
T ss_pred ecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-Ccc
Confidence 7766655544444444 466666666543 43344555666666666666542 33334444554 4566666632 334
Q ss_pred ccCCccccCCCCCCEEeCCCCccc-----ccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcC
Q 037302 249 GLLPREVGNLKYLDSLSLDGNNLI-----GSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIV 323 (408)
Q Consensus 249 ~~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 323 (408)
.....+|.+|++|+.+.+.++... .....+|.+|++|+.+.+.+ .+......+|.+|++|+.+.+..+ ++.+.
T Consensus 261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~ 338 (401)
T 4fdw_A 261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQIN 338 (401)
T ss_dssp EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEEC
T ss_pred EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEc
Confidence 344555666666666666554432 23344555566666666653 244445555556666666666433 44445
Q ss_pred CcccccCCCccEEEcCCccccccCCcCCCCCC-CccEEeCCCCc
Q 037302 324 PPEIGNLTHLRQLDLSHNFINGTIPSQLGYIP-NISAVDLSKNN 366 (408)
Q Consensus 324 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~ 366 (408)
..+|.+| +|+.+.+.++.........|.+++ +++.|.+-.+.
T Consensus 339 ~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 339 FSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp TTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred HHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 5556655 666666666655544444555543 45555554443
No 106
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.73 E-value=9.7e-17 Score=145.46 Aligned_cols=240 Identities=17% Similarity=0.133 Sum_probs=170.1
Q ss_pred ceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcC-chhhccCCCCCEE-EcC
Q 037302 94 DALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPI-PSTLYHLNQLSNL-YLA 171 (408)
Q Consensus 94 ~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L-~l~ 171 (408)
+.++.++++++.++ ..+ .+++++|++++|.++...+.+|..+++|++|++++|.+.... ...|.++++++++ ...
T Consensus 12 ~~v~C~~~~Lt~iP-~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTEIP-SDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCSCC-TTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCccC-cCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 56777777777553 334 368999999999998666678899999999999999875433 4567788888765 445
Q ss_pred CCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccC-CcCCCCCCcccCCC-CCccEEEccCCcccc
Q 037302 172 YNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSH-NRLDSPIPPTIGNL-TNLTSLDLSSNQLSG 249 (408)
Q Consensus 172 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~-~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~ 249 (408)
.+.+....+..|..+++|+.|++++|.+.......+.....+..+++.+ +.+.......+..+ ..++.|++++|.+..
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 5677666677888999999999999988766555555666677777755 45554444455554 368888999888875
Q ss_pred cCCccccCCCCCCEEeCCC-CcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccc
Q 037302 250 LLPREVGNLKYLDSLSLDG-NNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIG 328 (408)
Q Consensus 250 ~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 328 (408)
.....+. ..+|+.+.+.+ +.+......++..+++|++|++++|.++...... +.+|+.|.+.++.--+..+ .+.
T Consensus 169 i~~~~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l~ 243 (350)
T 4ay9_X 169 IHNSAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP-TLE 243 (350)
T ss_dssp ECTTSST-TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-CTT
T ss_pred CChhhcc-ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-Cch
Confidence 5554443 45788888875 4455445566788888999999998888554433 4566666666554332333 467
Q ss_pred cCCCccEEEcCCc
Q 037302 329 NLTHLRQLDLSHN 341 (408)
Q Consensus 329 ~~~~L~~L~l~~~ 341 (408)
.+++|+.+++.++
T Consensus 244 ~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 244 KLVALMEASLTYP 256 (350)
T ss_dssp TCCSCCEEECSCH
T ss_pred hCcChhhCcCCCC
Confidence 7888888888765
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.73 E-value=3.9e-17 Score=143.96 Aligned_cols=171 Identities=27% Similarity=0.391 Sum_probs=90.3
Q ss_pred CCCCCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCce
Q 037302 16 TCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDA 95 (408)
Q Consensus 16 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 95 (408)
..+++|+.|+++++.+... + .+..+++|++|++++|.+++..+ +..+++|+.|++++|.+.+ .+ .+..+++|++
T Consensus 43 ~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCE
T ss_pred hhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCE
Confidence 3455566666666555432 2 25555666666666665553322 5556666666666665542 22 2555556666
Q ss_pred eecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcC
Q 037302 96 LRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNL 175 (408)
Q Consensus 96 L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 175 (408)
|++++|.+... ..+..+++|++|++++|.+... ..+..+++|++|++++|.+....+ +..+++|+.|++++|.+
T Consensus 117 L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp EECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcC
Confidence 66666555433 3345555566666655555432 345555555555555555543322 45555555555555555
Q ss_pred CCCCCccccCCCCCCEEEecCcccc
Q 037302 176 VGPLPKEVGNMKNLDSLLLNRNSLT 200 (408)
Q Consensus 176 ~~~~~~~~~~~~~L~~L~l~~~~~~ 200 (408)
... ..+..+++|+.|++++|.+.
T Consensus 191 ~~l--~~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 191 SDL--RALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp CBC--GGGTTCTTCSEEEEEEEEEE
T ss_pred CCC--hhhccCCCCCEEECcCCccc
Confidence 432 22455555555555555543
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.73 E-value=1.4e-16 Score=134.35 Aligned_cols=153 Identities=20% Similarity=0.246 Sum_probs=121.5
Q ss_pred CeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCC
Q 037302 214 GKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYN 293 (408)
Q Consensus 214 ~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 293 (408)
+.++++++.++.+ |..+. ++++.|+++++.+....+..+..+++|+.|++++|.+....+..+..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~~i-P~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEI-PTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSC-CSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcC-CCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 3566666655543 33332 57888888888887666667788888888888888887666777888888899999888
Q ss_pred ccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCC
Q 037302 294 QLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSG 369 (408)
Q Consensus 294 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 369 (408)
.++...+..|..+++|++|++++|++.+..+..|..+++|+.|++++|.+++..+..+..+++|+.|++++|++..
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 8886666667888889999999998887777888888899999999998887777778888889999999988864
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.73 E-value=4.8e-17 Score=148.06 Aligned_cols=154 Identities=27% Similarity=0.265 Sum_probs=74.7
Q ss_pred CccEEEccCCcccccCCcccc-CCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEc
Q 037302 236 NLTSLDLSSNQLSGLLPREVG-NLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVL 314 (408)
Q Consensus 236 ~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 314 (408)
.++.|++++|.++......+. .+++|+.|++++|.+....+..+..+++|++|++++|.++...+..|.++++|++|++
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 119 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL 119 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence 345555555554444444443 4455555555555554444444455555555555555555444444555555555555
Q ss_pred CCCccCCcCCcccccCCCccEEEcCCccccccCCcCC---CCCCCccEEeCCCCccCCcCCccccCC-----CeEEccCC
Q 037302 315 SHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQL---GYIPNISAVDLSKNNLSGVVPASVRII-----PKLIVSEN 386 (408)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~l~~~~~~~~~~l-----~~l~l~~n 386 (408)
++|.+..+.+..|..+++|+.|++++|.++...+..+ ..+++|+.|++++|++..+.+..+..+ +.|++.+|
T Consensus 120 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 120 YNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred CCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCC
Confidence 5555554444455555555555555555553333333 334555555555555554443333332 23555555
Q ss_pred ccC
Q 037302 387 NLE 389 (408)
Q Consensus 387 ~~~ 389 (408)
++.
T Consensus 200 ~~~ 202 (361)
T 2xot_A 200 PLE 202 (361)
T ss_dssp CEE
T ss_pred Ccc
Confidence 543
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.72 E-value=1.2e-16 Score=134.66 Aligned_cols=150 Identities=20% Similarity=0.274 Sum_probs=132.2
Q ss_pred cEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCC
Q 037302 238 TSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHN 317 (408)
Q Consensus 238 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 317 (408)
+.++.+++.++. .+..+ .++++.|+++++.+....+..+..+++|++|++++|.++...+..|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~~-iP~~l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTE-IPTNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSS-CCSSC--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCc-CCCcc--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 578888887774 33333 278999999999998777778899999999999999999888889999999999999999
Q ss_pred ccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCCcccc---CCCeEEccCCccCC
Q 037302 318 TLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVR---IIPKLIVSENNLEL 390 (408)
Q Consensus 318 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~---~l~~l~l~~n~~~~ 390 (408)
.++.+....|..+++|++|++++|++++..+..+..+++|+.|++++|+++++.+..+. ++++|++++|++.+
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 99977777789999999999999999988889999999999999999999999887666 46699999999864
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=5.7e-17 Score=156.38 Aligned_cols=180 Identities=30% Similarity=0.393 Sum_probs=150.0
Q ss_pred ccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCC
Q 037302 183 VGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLD 262 (408)
Q Consensus 183 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 262 (408)
+..+++|+.|+++++.+... + .+..++.|+.|++++|.+....+ +..+++|+.|++++|.+... ..+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCC
T ss_pred hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCC
Confidence 46688899999999988743 2 57889999999999999876544 78899999999999988743 3678899999
Q ss_pred EEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCcc
Q 037302 263 SLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNF 342 (408)
Q Consensus 263 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 342 (408)
.|++++|.+... ..+..+++|+.|++++|.+... ..+..+++|+.|+|++|.+.+..+ +..+++|+.|++++|+
T Consensus 113 ~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 113 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 186 (605)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCC
Confidence 999999998753 4578899999999999999854 668889999999999999986644 8889999999999999
Q ss_pred ccccCCcCCCCCCCccEEeCCCCccCCcCCcccc
Q 037302 343 INGTIPSQLGYIPNISAVDLSKNNLSGVVPASVR 376 (408)
Q Consensus 343 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~ 376 (408)
+.+. ..+..+++|+.|++++|++.+.....+.
T Consensus 187 i~~l--~~l~~l~~L~~L~L~~N~l~~~p~~~~~ 218 (605)
T 1m9s_A 187 ISDL--RALAGLKNLDVLELFSQECLNKPINHQS 218 (605)
T ss_dssp CCBC--GGGTTCTTCSEEECCSEEEECCCCCCCS
T ss_pred CCCC--hHHccCCCCCEEEccCCcCcCCcccccc
Confidence 9864 3578899999999999999876444433
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=1.2e-16 Score=154.09 Aligned_cols=172 Identities=29% Similarity=0.407 Sum_probs=111.3
Q ss_pred cCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEE
Q 037302 161 HLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSL 240 (408)
Q Consensus 161 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L 240 (408)
.++.|+.|+++++.+... ..+..+++|+.|++++|.+.+..+ +..++.|+.|++++|.+... ..+..+++|+.|
T Consensus 41 ~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L 114 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKSL 114 (605)
T ss_dssp HHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCCEE
T ss_pred cCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCCEE
Confidence 344455555555444322 124455555555555555443222 45555666666666555432 246667777777
Q ss_pred EccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccC
Q 037302 241 DLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLS 320 (408)
Q Consensus 241 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 320 (408)
++++|.+.+. ..+..+++|+.|++++|.+... ..+..+++|+.|+|++|.+....+ +..+++|+.|+|++|.+.
T Consensus 115 ~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 115 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp ECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred EecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence 7777776642 3466777888888888877643 556778888888888888775443 777888888888888887
Q ss_pred CcCCcccccCCCccEEEcCCcccccc
Q 037302 321 GIVPPEIGNLTHLRQLDLSHNFINGT 346 (408)
Q Consensus 321 ~~~~~~~~~~~~L~~L~l~~~~~~~~ 346 (408)
+. ..+..+++|+.|++++|++.+.
T Consensus 189 ~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 189 DL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp BC--GGGTTCTTCSEEECCSEEEECC
T ss_pred CC--hHHccCCCCCEEEccCCcCcCC
Confidence 54 4677788888888888888754
No 113
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.72 E-value=1.5e-16 Score=134.05 Aligned_cols=155 Identities=19% Similarity=0.241 Sum_probs=131.4
Q ss_pred CeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccC-CccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCC
Q 037302 214 GKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLL-PREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGY 292 (408)
Q Consensus 214 ~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 292 (408)
+.++++++.+..+ |..+ ...+++|++++|.+.... ...+..+++|+.|+++++.+....+..+..+++|++|++++
T Consensus 14 ~~l~~s~n~l~~i-P~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKI-PEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccC-ccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 4788888887653 4333 346789999999888653 35578899999999999998877777888999999999999
Q ss_pred CccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcC
Q 037302 293 NQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVV 371 (408)
Q Consensus 293 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 371 (408)
|.++...+..+..+++|++|++++|++.+..+..|..+++|++|++++|++++..|..+..+++|+.|++++|++....
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 9999777777889999999999999999888888999999999999999999888889999999999999999997653
No 114
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.72 E-value=1.8e-16 Score=133.60 Aligned_cols=152 Identities=19% Similarity=0.248 Sum_probs=99.0
Q ss_pred CEEEecCcccccccCcccccccccCeEEccCCcCCCCCC-cccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCC
Q 037302 190 DSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIP-PTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDG 268 (408)
Q Consensus 190 ~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 268 (408)
+.++++++.+... +..+ .+.++.|+++++.+....+ ..+..+++|++|++++|.+....+..|..+++|++|++++
T Consensus 14 ~~l~~s~n~l~~i-P~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKI-PEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccC-ccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 3566666665532 2222 3445677777776665432 3456667777777777776655555666677777777777
Q ss_pred CcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCcccc
Q 037302 269 NNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFIN 344 (408)
Q Consensus 269 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 344 (408)
|.+....+..+..+++|++|++++|.++...+..+..+++|++|++++|.+++..+..|..+++|+.|++++|++.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 7766555555666777777777777777666666667777777777777776666666777777777777777665
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.70 E-value=6e-16 Score=131.34 Aligned_cols=155 Identities=29% Similarity=0.320 Sum_probs=122.3
Q ss_pred cCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCC
Q 037302 213 GGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGY 292 (408)
Q Consensus 213 L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 292 (408)
.+.++.+++.+..+ |..+ .++|+.|++++|.+....+..+..+++|+.|++++|.+.......+..+++|++|++++
T Consensus 21 ~~~v~c~~~~l~~i-p~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASV-PAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCcc-CCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 34566666655533 3222 27788888888888877677788888888888888888766666678888999999999
Q ss_pred CccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcC
Q 037302 293 NQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVV 371 (408)
Q Consensus 293 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 371 (408)
|.++...+..+..+++|++|++++|++. .++..+..+++|+.|++++|+++...+..+..+++|+.|++++|++....
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 9888776677788899999999999888 55677788899999999999988766677888899999999999887654
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.70 E-value=5.5e-17 Score=134.51 Aligned_cols=152 Identities=16% Similarity=0.258 Sum_probs=73.5
Q ss_pred ccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcE
Q 037302 208 GYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTS 287 (408)
Q Consensus 208 ~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 287 (408)
..++.++.++++++.+... + .+..+++|++|++++|.+.. ...+..+++|++|++++|.+....+..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDL-T-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCSCC-T-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCccCh-H-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 3445555566655555422 2 34455555555555554331 123444555555555555554433444455555555
Q ss_pred EeCCCCccccCCCcCCcCCCCCcEEEcCCCc-cCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCc
Q 037302 288 LNLGYNQLSSSIPPELMNCSQLQNLVLSHNT-LSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNN 366 (408)
Q Consensus 288 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 366 (408)
|++++|.++...+..+..+++|++|++++|+ +... ..+..+++|++|++++|++++. + .+..+++|+.|++++|+
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~--~~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI--MPLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC--GGGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC-
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc--HhhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcc
Confidence 5555555554334444455555555555554 3322 1344455555555555555432 1 34444555555555554
Q ss_pred c
Q 037302 367 L 367 (408)
Q Consensus 367 l 367 (408)
+
T Consensus 193 i 193 (197)
T 4ezg_A 193 I 193 (197)
T ss_dssp -
T ss_pred c
Confidence 4
No 117
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.70 E-value=4.8e-16 Score=131.91 Aligned_cols=155 Identities=22% Similarity=0.281 Sum_probs=133.7
Q ss_pred CCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEc
Q 037302 235 TNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVL 314 (408)
Q Consensus 235 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 314 (408)
...+.++.+++.+.. .+..+ .++|+.|+++++.+....+..+..+++|++|++++|.+....+..+..+++|++|++
T Consensus 19 Cs~~~v~c~~~~l~~-ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 19 CSGTTVDCRSKRHAS-VPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp EETTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred EeCCEeEccCCCcCc-cCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence 356778888887773 33333 389999999999998777888999999999999999998777677899999999999
Q ss_pred CCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCCcccc---CCCeEEccCCccCCC
Q 037302 315 SHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVR---IIPKLIVSENNLELE 391 (408)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~---~l~~l~l~~n~~~~~ 391 (408)
++|+++...+..|..+++|++|++++|.++ .+|..+..+++|+.|++++|++..+.+..+. ++++|++++|++.+.
T Consensus 96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 96 GTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred CCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 999999887778899999999999999999 7788889999999999999999988876655 566999999999865
Q ss_pred CC
Q 037302 392 NS 393 (408)
Q Consensus 392 ~~ 393 (408)
.+
T Consensus 175 c~ 176 (229)
T 3e6j_A 175 CR 176 (229)
T ss_dssp BG
T ss_pred cc
Confidence 43
No 118
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.70 E-value=8e-17 Score=133.51 Aligned_cols=151 Identities=19% Similarity=0.274 Sum_probs=82.5
Q ss_pred CCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEE
Q 037302 233 NLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNL 312 (408)
Q Consensus 233 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 312 (408)
.+++|++|+++++.+.+ .+ .+..+++|++|++++|.+.. ...+..+++|++|++++|.++...+..+..+++|++|
T Consensus 42 ~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 42 QMNSLTYITLANINVTD-LT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hcCCccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 34556666666665552 22 35555666666666664432 2345556666666666666654445555566666666
Q ss_pred EcCCCccCCcCCcccccCCCccEEEcCCcc-ccccCCcCCCCCCCccEEeCCCCccCCcCC-ccccCCCeEEccCCccC
Q 037302 313 VLSHNTLSGIVPPEIGNLTHLRQLDLSHNF-INGTIPSQLGYIPNISAVDLSKNNLSGVVP-ASVRIIPKLIVSENNLE 389 (408)
Q Consensus 313 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~l~~l~l~~n~~~ 389 (408)
++++|.+++..+..+..+++|++|++++|. ++ .++ .+..+++|+.|++++|++.+..+ ..+.++++|++++|++.
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCTTGGGCSSCCEEEECBC---
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChHHhccCCCCCEEEeeCcccC
Confidence 666666654444555566666666666665 44 223 35556666666666666655432 33445556666666653
No 119
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.68 E-value=5.7e-16 Score=147.86 Aligned_cols=187 Identities=29% Similarity=0.379 Sum_probs=117.4
Q ss_pred CCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEcc
Q 037302 164 QLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLS 243 (408)
Q Consensus 164 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~ 243 (408)
+++.|+++++.+.. ++..+ .++|+.|++++|.+.. ++ ..+++|+.|++++|.+.. ++. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALIS-LP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 56666666665543 23222 2556666666666552 22 335666777777666655 333 333 67777777
Q ss_pred CCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcC
Q 037302 244 SNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIV 323 (408)
Q Consensus 244 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 323 (408)
+|.++. .+. .+++|+.|++++|.+.. ++. .+++|++|++++|.++. ++. +. ++|+.|++++|.++. +
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~-l 195 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLES-L 195 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSS-C
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCc-h
Confidence 777664 222 45777777777777664 222 45677888888877775 343 44 778888888887763 3
Q ss_pred CcccccCCCc-------cEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCCccccCC
Q 037302 324 PPEIGNLTHL-------RQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVRII 378 (408)
Q Consensus 324 ~~~~~~~~~L-------~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l 378 (408)
+. +.. +| +.|++++|+++ .+|..+..+++|+.|++++|++.+..|..+..+
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 33 433 56 88888888887 456666668888888888888887777665543
No 120
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.68 E-value=1.8e-16 Score=144.26 Aligned_cols=156 Identities=31% Similarity=0.258 Sum_probs=81.9
Q ss_pred cCeEEccCCcCCCCCCcccC-CCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCC
Q 037302 213 GGKLDLSHNRLDSPIPPTIG-NLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLG 291 (408)
Q Consensus 213 L~~l~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 291 (408)
++.|++++|.+....+..+. .+++|+.|++++|.+....+..|..+++|+.|++++|.+.......+..+++|++|+++
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 120 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY 120 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC
Confidence 44455555544444444444 45555555555555554444445555555555555555554444445555556666666
Q ss_pred CCccccCCCcCCcCCCCCcEEEcCCCccCCcCCccc---ccCCCccEEEcCCccccccCCcCCCCCCC--ccEEeCCCCc
Q 037302 292 YNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEI---GNLTHLRQLDLSHNFINGTIPSQLGYIPN--ISAVDLSKNN 366 (408)
Q Consensus 292 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--L~~L~l~~~~ 366 (408)
+|.+....+..+..+++|+.|++++|.+..+....+ ..+++|+.|++++|+++...+..+..++. ++.|++++|+
T Consensus 121 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 121 NNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred CCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCC
Confidence 665555545555555666666666665554333333 34556666666666665443344444444 3556666665
Q ss_pred cC
Q 037302 367 LS 368 (408)
Q Consensus 367 l~ 368 (408)
+.
T Consensus 201 ~~ 202 (361)
T 2xot_A 201 LE 202 (361)
T ss_dssp EE
T ss_pred cc
Confidence 54
No 121
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.68 E-value=3.5e-16 Score=149.26 Aligned_cols=188 Identities=25% Similarity=0.350 Sum_probs=149.1
Q ss_pred CCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeC
Q 037302 187 KNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSL 266 (408)
Q Consensus 187 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 266 (408)
.+++.|+++++.+.+ ++..+ +++|+.|++++|.+.. ++ ..+++|+.|++++|.++. .+. +.. +|+.|++
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALIS-LP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 389999999999876 44333 4789999999999884 34 457899999999999986 444 443 9999999
Q ss_pred CCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCcccccc
Q 037302 267 DGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGT 346 (408)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 346 (408)
++|.+.. ++. .+++|++|++++|.++. ++. .+++|++|++++|++++ ++. +. ++|+.|++++|.++ .
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~ 194 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-S 194 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-S
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-c
Confidence 9999886 333 68999999999999985 443 57899999999999986 444 55 89999999999999 6
Q ss_pred CCcCCCCCCCc-------cEEeCCCCccCCcCCcc--ccCCCeEEccCCccCCCCCCCcCCCCC
Q 037302 347 IPSQLGYIPNI-------SAVDLSKNNLSGVVPAS--VRIIPKLIVSENNLELENSTSSENAPP 401 (408)
Q Consensus 347 ~~~~~~~~~~L-------~~L~l~~~~l~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~ 401 (408)
+|. +.. +| +.|++++|+++.+.+.. +.++++|++++|++++.+|..+..++.
T Consensus 195 lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 195 LPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp CCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred hhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 665 543 77 99999999999754322 335669999999999999988777543
No 122
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.67 E-value=9.7e-15 Score=134.49 Aligned_cols=329 Identities=9% Similarity=0.086 Sum_probs=187.6
Q ss_pred hhccCC-CCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCce---ecccCcccccCCCCCceeecCCccccccCCCcCCC
Q 037302 38 EIGALS-KLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNI---LNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGN 113 (408)
Q Consensus 38 ~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~ 113 (408)
+|..+. .|+++.+..+ ++.+...+|.+|.+|+.+.+..+. +..+...+|.+|.+|+.+.+..+ ++.+....|..
T Consensus 58 aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~ 135 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHH 135 (394)
T ss_dssp TTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTT
T ss_pred hccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhh
Confidence 455553 4677777644 444556667777777777665432 33344555666666666666544 34455556666
Q ss_pred CCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEE
Q 037302 114 LTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLL 193 (408)
Q Consensus 114 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 193 (408)
+.+|+.+.+.... ..+...++..+..|+.+.+..+ +..+...+|. ...|+.+.+..... .....++..+.++....
T Consensus 136 c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~-~i~~~af~~c~~l~~~~ 211 (394)
T 4gt6_A 136 CEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVT-RIGTNAFSECFALSTIT 211 (394)
T ss_dssp CTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCC-EECTTTTTTCTTCCEEE
T ss_pred hccccccccccee-eeecccceecccccccccccce-eeEecccccc-ccceeEEEECCccc-ccccchhhhccccceec
Confidence 6677766665432 2234455666666666666543 2223333443 24566666544321 12234455566665555
Q ss_pred ecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccc
Q 037302 194 LNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIG 273 (408)
Q Consensus 194 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 273 (408)
.............+...... ...+ ........+..+.+.. .+......+|..+..|+.+.+......
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~-~~~~----------~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~- 278 (394)
T 4gt6_A 212 SDSESYPAIDNVLYEKSANG-DYAL----------IRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS- 278 (394)
T ss_dssp ECCSSSCBSSSCEEEECTTS-CEEE----------EECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE-
T ss_pred ccccccccccceeecccccc-cccc----------cccccccccceEEcCC-cceEcccceeeecccccEEecccccce-
Confidence 44332211100001100000 0000 0111223455555543 233355667888999999999765432
Q ss_pred cCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCC
Q 037302 274 SIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGY 353 (408)
Q Consensus 274 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 353 (408)
....++.++++|+.+.+.. .+......+|.+|.+|+.+.+..+ ++.+...+|.+|.+|+.+.+..+ ++.....+|.+
T Consensus 279 I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~ 355 (394)
T 4gt6_A 279 IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSN 355 (394)
T ss_dssp ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTT
T ss_pred ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhC
Confidence 4556788899999999964 455567778999999999999764 55577789999999999999765 66567788999
Q ss_pred CCCccEEeCCCCccCCcCCccccCCCeEEccCCcc
Q 037302 354 IPNISAVDLSKNNLSGVVPASVRIIPKLIVSENNL 388 (408)
Q Consensus 354 ~~~L~~L~l~~~~l~~~~~~~~~~l~~l~l~~n~~ 388 (408)
|.+|+.+++.++......-....+|+.+.+..+.+
T Consensus 356 C~~L~~i~~~~~~~~~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 356 CTALNNIEYSGSRSQWNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CTTCCEEEESSCHHHHHTCBCCCCC----------
T ss_pred CCCCCEEEECCceeehhhhhccCCCCEEEeCCCCE
Confidence 99999999998865422222223455666655443
No 123
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.65 E-value=2.5e-16 Score=136.54 Aligned_cols=170 Identities=22% Similarity=0.273 Sum_probs=109.8
Q ss_pred CCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEE
Q 037302 162 LNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLD 241 (408)
Q Consensus 162 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~ 241 (408)
+.++..+.+.++.+.+.. .+..+++|+.|++++|.+.+. + .+..++.|+.|++++|.+....+ +..+++|+.|+
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 344555566666654322 356677888888888776643 2 56667777777777777765433 66777777777
Q ss_pred ccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCC
Q 037302 242 LSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSG 321 (408)
Q Consensus 242 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 321 (408)
+++|.+.+... +.. ++|+.|++++|.+... ..+..+++|++|++++|.+++. ..+..+++|++|++++|++.+
T Consensus 92 L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 92 VNRNRLKNLNG--IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp CCSSCCSCCTT--CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCB
T ss_pred CCCCccCCcCc--ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcc
Confidence 77777664322 222 6777777777766543 3466677777777777777643 246667777777777777764
Q ss_pred cCCcccccCCCccEEEcCCcccccc
Q 037302 322 IVPPEIGNLTHLRQLDLSHNFINGT 346 (408)
Q Consensus 322 ~~~~~~~~~~~L~~L~l~~~~~~~~ 346 (408)
. ..+..+++|+.|++++|+++..
T Consensus 165 ~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 165 T--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp C--TTSTTCCCCCEEEEEEEEEECC
T ss_pred h--HHhccCCCCCEEeCCCCcccCC
Confidence 4 5566677777777777776644
No 124
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.63 E-value=6.9e-16 Score=133.78 Aligned_cols=170 Identities=23% Similarity=0.251 Sum_probs=124.8
Q ss_pred CCCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCceee
Q 037302 18 FPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALR 97 (408)
Q Consensus 18 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 97 (408)
+.+++.+++.++.+.+. + .+..+++|++|++++|.++.. + .+..+++|+.|++++|.+.+..+ +..+++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 44566667777766633 2 467788888888888877643 3 67778888888888888775443 77888888888
Q ss_pred cCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCC
Q 037302 98 LRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVG 177 (408)
Q Consensus 98 l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 177 (408)
+++|.++.+.+ +.. ++|++|++++|.+... ..+..+++|+.|++++|.++.. ..+..+++|+.|++++|.+..
T Consensus 92 L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 92 VNRNRLKNLNG--IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp CCSSCCSCCTT--CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCB
T ss_pred CCCCccCCcCc--ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcc
Confidence 88888775433 233 7888888888887743 3577888888888888887754 357778888888888888765
Q ss_pred CCCccccCCCCCCEEEecCcccccc
Q 037302 178 PLPKEVGNMKNLDSLLLNRNSLTGP 202 (408)
Q Consensus 178 ~~~~~~~~~~~L~~L~l~~~~~~~~ 202 (408)
. ..+..+++|+.|++++|.+...
T Consensus 165 ~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 165 T--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp C--TTSTTCCCCCEEEEEEEEEECC
T ss_pred h--HHhccCCCCCEEeCCCCcccCC
Confidence 4 5577788888888888877643
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.62 E-value=3.1e-15 Score=123.21 Aligned_cols=131 Identities=25% Similarity=0.365 Sum_probs=82.6
Q ss_pred cEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCc-cccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCC
Q 037302 238 TSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPP-TIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSH 316 (408)
Q Consensus 238 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 316 (408)
+.++++++.+.. .+..+. +++++|+++++.+....+. .+..+++|++|++++|.++...+..+.++++|++|++++
T Consensus 11 ~~l~~s~~~l~~-ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKE-IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSS-CCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCc-CccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 455555555542 222221 2566666666665544332 356666777777777777666566666677777777777
Q ss_pred CccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcC
Q 037302 317 NTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVV 371 (408)
Q Consensus 317 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 371 (408)
|++++..+..|..+++|++|++++|++++..|..+..+++|+.|++++|++.+..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 7776666666666777777777777777666666777777777777777776543
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.59 E-value=2.5e-15 Score=121.13 Aligned_cols=89 Identities=25% Similarity=0.253 Sum_probs=38.6
Q ss_pred cCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccC-CcCCCCCCCcc
Q 037302 280 GYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTI-PSQLGYIPNIS 358 (408)
Q Consensus 280 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~ 358 (408)
..+++|++|++++|.++.. ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++.. +..+..+++|+
T Consensus 46 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~ 123 (168)
T 2ell_A 46 AEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLK 123 (168)
T ss_dssp GGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCC
T ss_pred HhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCC
Confidence 3444444444444444422 33444444444444444444333333333444444444444444321 13344444444
Q ss_pred EEeCCCCccCCc
Q 037302 359 AVDLSKNNLSGV 370 (408)
Q Consensus 359 ~L~l~~~~l~~~ 370 (408)
.|++++|++.+.
T Consensus 124 ~L~l~~N~l~~~ 135 (168)
T 2ell_A 124 SLDLFNCEVTNL 135 (168)
T ss_dssp EEECCSSGGGTS
T ss_pred EEEeeCCcCcch
Confidence 444444444443
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.57 E-value=5.8e-15 Score=118.97 Aligned_cols=130 Identities=23% Similarity=0.272 Sum_probs=63.4
Q ss_pred CCCcEEEcCCCccc-cccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCceee
Q 037302 19 PNLESIIIPYTLLS-GRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALR 97 (408)
Q Consensus 19 ~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 97 (408)
++|++|++++|.+. +.++..+..+++|++|++++|.++.. ..+..+++|++|++++|.+....+..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45566666655554 34444455555555555555555433 4455555555555555555533444444455555555
Q ss_pred cCCccccccCC-CcCCCCCCCCEEEcCCCeecccCc---ccccCCCCCceEeccCCc
Q 037302 98 LRGNKLDGLIP-SSIGNLTNLTHLDLSLNQLSGRLP---QEVGNLKNLLSLFLDNNN 150 (408)
Q Consensus 98 l~~~~i~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~---~~~~~l~~L~~L~l~~~~ 150 (408)
+++|.++.+.. ..+..+++|++|++++|.+....+ ..+..+++|++|++.++.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 55555443321 334444444444444444442222 233444444444444443
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.56 E-value=1.3e-14 Score=119.39 Aligned_cols=176 Identities=23% Similarity=0.281 Sum_probs=120.9
Q ss_pred CeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCc-cccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCC
Q 037302 214 GKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPR-EVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGY 292 (408)
Q Consensus 214 ~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 292 (408)
+.++++++.+.. +|..+. .++++|+++++.+....+. .+..+++|+.|++++|.+....+..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l~~-ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKE-IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSS-CCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCc-CccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 466677666653 333332 3788888888877755443 477788888888888888766677788888888888888
Q ss_pred CccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCC
Q 037302 293 NQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVP 372 (408)
Q Consensus 293 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 372 (408)
|.++...+..+..+++|++|++++|++++..+..+..+++|++|++++|++....+-. .....++...+.++......|
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~-~~~~~l~~~~~~~~~~~C~~P 166 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA-WFAEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGH-HHHHHHHHHCCSGGGCBBCSS
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcch-HHHHHHHHcCCCCCCCCCCCC
Confidence 8888777777888888888888888888777788888888888888888887432210 000112323344455555566
Q ss_pred ccccCCCeEEccCCccCCCCC
Q 037302 373 ASVRIIPKLIVSENNLELENS 393 (408)
Q Consensus 373 ~~~~~l~~l~l~~n~~~~~~~ 393 (408)
..+......++..+.+....+
T Consensus 167 ~~l~~~~l~~l~~~~~~C~~~ 187 (192)
T 1w8a_A 167 SKVRDVQIKDLPHSEFKCSSE 187 (192)
T ss_dssp TTTTTSBGGGSCTTTCCCCCC
T ss_pred hHHcCCChhhCcHhhcCcCCC
Confidence 666666666666666654433
No 129
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.56 E-value=1.7e-12 Score=119.00 Aligned_cols=306 Identities=11% Similarity=0.063 Sum_probs=163.4
Q ss_pred ccCCCCCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCC
Q 037302 14 NFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDL 93 (408)
Q Consensus 14 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 93 (408)
+|....+|+.+.+... +...-..+|..|.+|+.+.+..+ ++.+...+|.++ +|+.+.+..+ +..+...+|..+ +|
T Consensus 41 ~~~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L 115 (379)
T 4h09_A 41 WYKDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DL 115 (379)
T ss_dssp TGGGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CC
T ss_pred ccccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-Cc
Confidence 3444455555555422 12122234555555555555433 333444445444 3444444332 211223334333 45
Q ss_pred ceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCccc------------CcCchhhcc
Q 037302 94 DALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLT------------GPIPSTLYH 161 (408)
Q Consensus 94 ~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~------------~~~~~~~~~ 161 (408)
+.+.+..+ +..+....|..+ +++.+.+..+ +......++..+..++.+.+...... ......+..
T Consensus 116 ~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (379)
T 4h09_A 116 DDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPA 192 (379)
T ss_dssp SEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCT
T ss_pred ccccCCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccc
Confidence 55555443 222333333332 3444433322 11122233444444444444322110 011112233
Q ss_pred CCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEE
Q 037302 162 LNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLD 241 (408)
Q Consensus 162 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~ 241 (408)
+..+..+.+..... ......+..+.+++.+.+..+ +.......+..+..|+.+.+..+ +..+...++..+.+|+.+.
T Consensus 193 ~~~~~~~~~~~~~~-~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~ 269 (379)
T 4h09_A 193 AKTGTEFTIPSTVK-TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLN 269 (379)
T ss_dssp TCCCSEEECCTTCC-EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEE
T ss_pred ccccccccccccee-EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccc
Confidence 44455554433221 122344566777777776543 23244556677778888877654 4444556777888888888
Q ss_pred ccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCC
Q 037302 242 LSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSG 321 (408)
Q Consensus 242 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 321 (408)
+... +......+|.+|.+|+.+.+.++.+......+|.+|.+|+.+.|..+ ++.....+|.+|.+|+++.+..+ ++.
T Consensus 270 l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~ 346 (379)
T 4h09_A 270 FYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITL 346 (379)
T ss_dssp ECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCE
T ss_pred cccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCE
Confidence 8653 44455667788888888888877766566677888888998888654 55566778888899998888654 555
Q ss_pred cCCcccccCCCc
Q 037302 322 IVPPEIGNLTHL 333 (408)
Q Consensus 322 ~~~~~~~~~~~L 333 (408)
+...+|.+++.+
T Consensus 347 I~~~aF~~c~~~ 358 (379)
T 4h09_A 347 IESGAFEGSSIT 358 (379)
T ss_dssp ECTTTTTTSSCC
T ss_pred EchhHhhCCCCC
Confidence 667778777443
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.55 E-value=6.1e-15 Score=116.29 Aligned_cols=89 Identities=25% Similarity=0.254 Sum_probs=36.2
Q ss_pred cCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCcccccc-CCcCCCCCCCcc
Q 037302 280 GYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGT-IPSQLGYIPNIS 358 (408)
Q Consensus 280 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~ 358 (408)
..+++|++|++++|.++.. ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++. .+..+..+++|+
T Consensus 39 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~ 116 (149)
T 2je0_A 39 DEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLK 116 (149)
T ss_dssp TTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCC
T ss_pred hhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCC
Confidence 3344444444444444322 3333344444444444444432333333344444444444444431 123334444444
Q ss_pred EEeCCCCccCCc
Q 037302 359 AVDLSKNNLSGV 370 (408)
Q Consensus 359 ~L~l~~~~l~~~ 370 (408)
.|++++|++.+.
T Consensus 117 ~L~l~~N~l~~~ 128 (149)
T 2je0_A 117 SLDLFNCEVTNL 128 (149)
T ss_dssp EEECTTCGGGGS
T ss_pred EEeCcCCcccch
Confidence 444444444443
No 131
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.55 E-value=8.1e-15 Score=115.56 Aligned_cols=127 Identities=24% Similarity=0.283 Sum_probs=73.6
Q ss_pred CCCCcEEEcCCCccc-cccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCcee
Q 037302 18 FPNLESIIIPYTLLS-GRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDAL 96 (408)
Q Consensus 18 ~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 96 (408)
.++|++|+++++.+. +.++..+..+++|++|++++|.++.. ..+..+++|++|++++|.+.+..|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 356777777777666 55566666677777777777766544 556666666666666666664455555556666666
Q ss_pred ecCCccccccC-CCcCCCCCCCCEEEcCCCeecccCc---ccccCCCCCceEec
Q 037302 97 RLRGNKLDGLI-PSSIGNLTNLTHLDLSLNQLSGRLP---QEVGNLKNLLSLFL 146 (408)
Q Consensus 97 ~l~~~~i~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~---~~~~~l~~L~~L~l 146 (408)
++++|.++... +..+..+++|++|++++|.+....+ ..+..+++|+.|++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 66666655331 2344555555555555555443322 23444445554444
No 132
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.55 E-value=2.9e-15 Score=148.14 Aligned_cols=146 Identities=23% Similarity=0.292 Sum_probs=103.5
Q ss_pred CCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccC
Q 037302 251 LPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNL 330 (408)
Q Consensus 251 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 330 (408)
.+..+..++.|+.|++++|.+. .++..+..+++|++|+|++|.++ .++..+..+++|++|+|++|+++ .++..+..+
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 292 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC 292 (727)
T ss_dssp ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence 3455667778888888888776 34444557788888888888887 56666778888888888888887 557777888
Q ss_pred CCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCCccccCCC----eEEccCCccCCCCCCCcCCCC
Q 037302 331 THLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVRIIP----KLIVSENNLELENSTSSENAP 400 (408)
Q Consensus 331 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~----~l~l~~n~~~~~~~~~~~~~~ 400 (408)
++|++|++++|.++ .+|..+..+++|+.|++++|++.+.+|..+..+. .+++++|.+++.+|..+..+.
T Consensus 293 ~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l~~l~ 365 (727)
T 4b8c_D 293 FQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHERRFIE 365 (727)
T ss_dssp TTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-----
T ss_pred CCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccccceeE
Confidence 88888888888877 6676788888888888888888887777665432 467888888888887765553
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.54 E-value=9.3e-14 Score=112.85 Aligned_cols=133 Identities=23% Similarity=0.226 Sum_probs=94.0
Q ss_pred ccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCC
Q 037302 237 LTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSH 316 (408)
Q Consensus 237 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 316 (408)
.+.++++++.+.... .. ..++|++|+++++.+.......+..+++|++|++++|.++...+..+..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~~~p-~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVP-TG--IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSCC-TT--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccCC-CC--CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 455666666555322 21 125677777777777655555567777888888888877766556677788888888888
Q ss_pred CccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCC
Q 037302 317 NTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVP 372 (408)
Q Consensus 317 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 372 (408)
|.+++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++.+..|
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 88876666667778888888888888886655566778888888888888876543
No 134
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.54 E-value=1.8e-12 Score=118.71 Aligned_cols=315 Identities=12% Similarity=0.106 Sum_probs=172.5
Q ss_pred hccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCceeecCCccccccCCCcCCCCCCCC
Q 037302 39 IGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLT 118 (408)
Q Consensus 39 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~ 118 (408)
+....+|+++.+... ++.+...+|.+|.+|+.+.+..+ +..+...+|.++ +|+.+.+..+ ++.+...+|..+ +|+
T Consensus 42 ~~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~ 116 (379)
T 4h09_A 42 YKDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLD 116 (379)
T ss_dssp GGGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCS
T ss_pred cccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-Ccc
Confidence 455567777777654 44466677777777887777654 333555666666 5666666543 344445555543 677
Q ss_pred EEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcc
Q 037302 119 HLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNS 198 (408)
Q Consensus 119 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 198 (408)
.+.+..+... ....+|... +++.+.+..+ ++.+....+..+..++.+.+........... .... ..
T Consensus 117 ~i~lp~~~~~-i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~-~~~~--------~~-- 182 (379)
T 4h09_A 117 DFEFPGATTE-IGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAEN-YVLY--------NK-- 182 (379)
T ss_dssp EEECCTTCCE-ECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEET-TEEE--------ET--
T ss_pred cccCCCcccc-ccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeeccc-ceec--------cc--
Confidence 7777554221 233344433 4555554432 2223344555566666665543321100000 0000 00
Q ss_pred cccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCcc
Q 037302 199 LTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPT 278 (408)
Q Consensus 199 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 278 (408)
.......+..+..+..+.+.... .......+..+..|+.+.+... +......++..+..|+.+.+..+ +......+
T Consensus 183 -~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~a 258 (379)
T 4h09_A 183 -NKTILESYPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFL 258 (379)
T ss_dssp -TSSEEEECCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTT
T ss_pred -ccceeccccccccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccc
Confidence 00011122233334444443221 1123344555667777766543 23344455666777777777654 33344456
Q ss_pred ccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCcc
Q 037302 279 IGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNIS 358 (408)
Q Consensus 279 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 358 (408)
+..+.+|+.+.+..+ +.......|.+|++|+.+.+.++.++.+...+|.+|.+|+.+.+..+ ++.....+|.+|.+|+
T Consensus 259 F~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~ 336 (379)
T 4h09_A 259 LQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALS 336 (379)
T ss_dssp TTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred cceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCC
Confidence 667777777777543 33355566777777777777777766666777777777777777654 5545566777777777
Q ss_pred EEeCCCCccCCcCCccccCCC
Q 037302 359 AVDLSKNNLSGVVPASVRIIP 379 (408)
Q Consensus 359 ~L~l~~~~l~~~~~~~~~~l~ 379 (408)
.+.+..+ ++.+...+|.+..
T Consensus 337 ~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 337 TISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp CCCCCTT-CCEECTTTTTTSS
T ss_pred EEEECCc-cCEEchhHhhCCC
Confidence 7777544 5555556665543
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.52 E-value=1.9e-13 Score=110.99 Aligned_cols=130 Identities=20% Similarity=0.214 Sum_probs=111.0
Q ss_pred CCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCC
Q 037302 261 LDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSH 340 (408)
Q Consensus 261 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 340 (408)
.+.+++.++.+.... . ...++|++|++++|.+....+..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~~~p-~--~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVP-T--GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSCC-T--TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccCC-C--CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 577888888776443 2 2347999999999999977777788999999999999999977777789999999999999
Q ss_pred ccccccCCcCCCCCCCccEEeCCCCccCCcCCcccc---CCCeEEccCCccCCCCC
Q 037302 341 NFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVR---IIPKLIVSENNLELENS 393 (408)
Q Consensus 341 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~---~l~~l~l~~n~~~~~~~ 393 (408)
|.+++..+..+..+++|+.|++++|++.++.+..+. ++++|++++|++++..|
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 999977777889999999999999999988876654 57799999999987654
No 136
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.52 E-value=2e-13 Score=112.27 Aligned_cols=128 Identities=28% Similarity=0.372 Sum_probs=84.4
Q ss_pred cEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCC
Q 037302 238 TSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHN 317 (408)
Q Consensus 238 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 317 (408)
+.++++++.+.. .+..+ .+++++|+++++.+. ..+..+..+++|++|++++|.++...+..|.++++|++|++++|
T Consensus 13 ~~l~~~~~~l~~-ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKV-LPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSS-CCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCc-CCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 345555555442 22222 246666666666665 33355666777777777777777666666777777777777777
Q ss_pred ccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCC
Q 037302 318 TLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSG 369 (408)
Q Consensus 318 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 369 (408)
.++.+.+..|..+++|+.|++++|.++...+..+..+++|+.|++++|++..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 7776666677777777777777777775555567777777777777777753
No 137
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.52 E-value=2.4e-16 Score=151.08 Aligned_cols=108 Identities=27% Similarity=0.325 Sum_probs=55.6
Q ss_pred CCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcC
Q 037302 260 YLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLS 339 (408)
Q Consensus 260 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 339 (408)
.|+.|++++|.+.. ++. +..+++|+.|++++|.++ ..|..+.++++|+.|++++|.+++ .+ .+..+++|+.|+++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 35555555555543 222 455555555555555555 344445555555555555555553 22 44555555555555
Q ss_pred CccccccC-CcCCCCCCCccEEeCCCCccCCcCC
Q 037302 340 HNFINGTI-PSQLGYIPNISAVDLSKNNLSGVVP 372 (408)
Q Consensus 340 ~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~ 372 (408)
+|.+++.. |..+..+++|+.|++++|++.+.+|
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 55555443 5555555555555555555554433
No 138
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.50 E-value=3.1e-13 Score=111.19 Aligned_cols=125 Identities=26% Similarity=0.307 Sum_probs=108.8
Q ss_pred CEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCc
Q 037302 262 DSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHN 341 (408)
Q Consensus 262 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 341 (408)
+.++.+++.+... +..+ .++|++|++++|.++ ..+..+.++++|++|++++|.++++.+..|..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~~i-p~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVL-PKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSC-CSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcC-CCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 5788888887744 3332 368999999999998 55678899999999999999999888888999999999999999
Q ss_pred cccccCCcCCCCCCCccEEeCCCCccCCcCCcccc---CCCeEEccCCccCC
Q 037302 342 FINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVR---IIPKLIVSENNLEL 390 (408)
Q Consensus 342 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~---~l~~l~l~~n~~~~ 390 (408)
.++...+..|..+++|+.|++++|++..+.+..|. ++++|++++|++.+
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 99988888999999999999999999988877665 56699999999864
No 139
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.47 E-value=1.1e-15 Score=146.62 Aligned_cols=121 Identities=25% Similarity=0.208 Sum_probs=69.4
Q ss_pred CCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEec
Q 037302 116 NLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLN 195 (408)
Q Consensus 116 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 195 (408)
.|+.|++++|.+.. ++. +..+++|+.|++++|.++ .++..+..+++|+.|++++|.+.. ++ .+..+++|+.|+++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 35666666666553 333 556666666666666665 445556666666666666666554 33 45666666666666
Q ss_pred Cccccccc-CcccccccccCeEEccCCcCCCCCCc---ccCCCCCccEEE
Q 037302 196 RNSLTGPI-PSTIGYLNLGGKLDLSHNRLDSPIPP---TIGNLTNLTSLD 241 (408)
Q Consensus 196 ~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~---~l~~~~~L~~L~ 241 (408)
+|.+.+.. +..+..++.|+.|++++|.+....+. .+..+++|+.|+
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 66665443 55566666666666666665443221 122356666664
No 140
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.46 E-value=1.1e-14 Score=144.03 Aligned_cols=142 Identities=28% Similarity=0.346 Sum_probs=72.5
Q ss_pred cccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCC
Q 037302 229 PTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQ 308 (408)
Q Consensus 229 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 308 (408)
..+..++.|+.|++++|.+. ..+..+..+++|++|++++|.+. .++..+..+++|++|+|++|.++ .++..+..+++
T Consensus 218 ~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~ 294 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQ 294 (727)
T ss_dssp ----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTT
T ss_pred hhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCC
Confidence 34445555666666655554 23333335555666666666555 34444555566666666666655 44555555566
Q ss_pred CcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCC-ccEEeCCCCccCCcCCcc
Q 037302 309 LQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPN-ISAVDLSKNNLSGVVPAS 374 (408)
Q Consensus 309 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~l~~~~~~~ 374 (408)
|++|+|++|.+. .++..|..+++|+.|++++|.+++.+|..+..... +..+++++|.+.+..|..
T Consensus 295 L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~ 360 (727)
T 4b8c_D 295 LKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE 360 (727)
T ss_dssp CSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_pred CCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc
Confidence 666666666554 33444555666666666666665544444332211 112445555555554443
No 141
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.46 E-value=1e-13 Score=112.40 Aligned_cols=132 Identities=18% Similarity=0.228 Sum_probs=72.9
Q ss_pred CCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEE
Q 037302 233 NLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNL 312 (408)
Q Consensus 233 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 312 (408)
.+++|++|++++|.+... +......++|+.|++++|.+... ..+..+++|++|++++|.++...+..+..+++|++|
T Consensus 17 ~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp CTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred CcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 445566666666655522 22222223666666666655533 345556666666666666664433334556666666
Q ss_pred EcCCCccCCcCC-cccccCCCccEEEcCCccccccCCc----CCCCCCCccEEeCCCCccC
Q 037302 313 VLSHNTLSGIVP-PEIGNLTHLRQLDLSHNFINGTIPS----QLGYIPNISAVDLSKNNLS 368 (408)
Q Consensus 313 ~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~l~ 368 (408)
++++|.+..... ..+..+++|+.|++++|+++. .|. .+..+++|+.|++++|...
T Consensus 94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 94 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred ECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 666666643221 245566666666666666653 333 2556666666666666553
No 142
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.45 E-value=1.5e-13 Score=111.55 Aligned_cols=133 Identities=19% Similarity=0.152 Sum_probs=73.5
Q ss_pred cccCCCCCCcEEEcCCCccccccchhhccC-CCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCC
Q 037302 13 LNFTCFPNLESIIIPYTLLSGRIPSEIGAL-SKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLK 91 (408)
Q Consensus 13 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 91 (408)
..|.++++|++|+++++.+.. ++. +..+ ++|++|++++|.+++. ..+..+++|++|++++|.+....+..+..++
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALP 88 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred HhcCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence 345666777777777776663 233 3333 3677777777666543 4556666666666666666543334345566
Q ss_pred CCceeecCCccccccCC-CcCCCCCCCCEEEcCCCeecccCcc----cccCCCCCceEeccCCc
Q 037302 92 DLDALRLRGNKLDGLIP-SSIGNLTNLTHLDLSLNQLSGRLPQ----EVGNLKNLLSLFLDNNN 150 (408)
Q Consensus 92 ~L~~L~l~~~~i~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~l~~~~ 150 (408)
+|++|++++|.+..+.. ..+..+++|++|++++|.+... +. .+..+++|+.++++++.
T Consensus 89 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~-~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 89 DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK-KHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGS-TTHHHHHHHHCTTCSEETTEECC
T ss_pred CCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCc-HhHHHHHHHHCCccceeCCCcCC
Confidence 66666666666543322 2455555555555555555422 22 24445555555555443
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.32 E-value=1.7e-11 Score=98.52 Aligned_cols=108 Identities=23% Similarity=0.252 Sum_probs=72.8
Q ss_pred CCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCC
Q 037302 261 LDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSH 340 (408)
Q Consensus 261 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 340 (408)
.+.++++++.+... +..+ .++|++|++++|.++...+..+.++++|++|++++|+++++.+..|..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~~i-p~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASV-PTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCcc-CccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 35566666655532 2222 26677777777777766666677777777777777777766666667777777777777
Q ss_pred ccccccCCcCCCCCCCccEEeCCCCccCCcC
Q 037302 341 NFINGTIPSQLGYIPNISAVDLSKNNLSGVV 371 (408)
Q Consensus 341 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 371 (408)
|+++...+..+..+++|+.|++++|++....
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 7777655566777777777777777776543
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.31 E-value=2.1e-11 Score=97.95 Aligned_cols=106 Identities=19% Similarity=0.293 Sum_probs=92.3
Q ss_pred CCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCC
Q 037302 284 NLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLS 363 (408)
Q Consensus 284 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 363 (408)
+.+.++++++.++. ++..+. ++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|+.|+++
T Consensus 10 ~~~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 46899999999984 444443 899999999999998888899999999999999999997777788999999999999
Q ss_pred CCccCCcCCcccc---CCCeEEccCCccCCCC
Q 037302 364 KNNLSGVVPASVR---IIPKLIVSENNLELEN 392 (408)
Q Consensus 364 ~~~l~~~~~~~~~---~l~~l~l~~n~~~~~~ 392 (408)
+|+++++.+..+. ++++|++++|++++..
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 9999998887665 5669999999997653
No 145
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.29 E-value=1.8e-14 Score=119.33 Aligned_cols=130 Identities=25% Similarity=0.314 Sum_probs=76.4
Q ss_pred CCCCcEEEcCCCccccccch------hhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCC
Q 037302 18 FPNLESIIIPYTLLSGRIPS------EIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLK 91 (408)
Q Consensus 18 ~~~L~~L~l~~~~~~~~~~~------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 91 (408)
.+.++.++++.+.+.+..+. .+..+++|++|++++|.++. .+ .+..+++|+.|++++|.+. .+|..+..++
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~ 93 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVAD 93 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHH
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCC
Confidence 34444444544444444333 66677777777777776664 33 5666667777777777666 4455555566
Q ss_pred CCceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCc-ccccCCCCCceEeccCCccc
Q 037302 92 DLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLP-QEVGNLKNLLSLFLDNNNLT 152 (408)
Q Consensus 92 ~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~ 152 (408)
+|++|++++|.+..+. .+..+++|++|++++|.+..... ..+..+++|+++++++|.+.
T Consensus 94 ~L~~L~L~~N~l~~l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 94 TLEELWISYNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp HCSEEEEEEEECCCHH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred cCCEEECcCCcCCcCC--ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 6777777766665432 35556666666666666653221 34556666666666666554
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.28 E-value=3.9e-11 Score=96.77 Aligned_cols=106 Identities=24% Similarity=0.279 Sum_probs=69.1
Q ss_pred CEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCc
Q 037302 262 DSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHN 341 (408)
Q Consensus 262 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 341 (408)
+.++++++.+... +..+ .++|++|++++|.+....+..+.++++|++|++++|+++++....|..+++|+.|++++|
T Consensus 15 ~~l~~~~n~l~~i-P~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASV-PAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCcc-CCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 4555655555422 2222 256777777777776665666677777777777777776655555667777777777777
Q ss_pred cccccCCcCCCCCCCccEEeCCCCccCCc
Q 037302 342 FINGTIPSQLGYIPNISAVDLSKNNLSGV 370 (408)
Q Consensus 342 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 370 (408)
+++...+..+..+++|+.|++++|++...
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 77755555567777777777777777643
No 147
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.26 E-value=5.7e-11 Score=95.76 Aligned_cols=104 Identities=20% Similarity=0.329 Sum_probs=90.1
Q ss_pred CcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCC
Q 037302 285 LTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSK 364 (408)
Q Consensus 285 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 364 (408)
-+.++++++.++ .++..+. ++|++|++++|.+.+..+..|..+++|++|++++|++++..+..|..+++|+.|++++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 478999999998 4455444 8999999999999988888999999999999999999977667788999999999999
Q ss_pred CccCCcCCcccc---CCCeEEccCCccCCC
Q 037302 365 NNLSGVVPASVR---IIPKLIVSENNLELE 391 (408)
Q Consensus 365 ~~l~~~~~~~~~---~l~~l~l~~n~~~~~ 391 (408)
|++.++.+..+. ++++|++++|++...
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 999988876555 567999999999743
No 148
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.24 E-value=1.7e-14 Score=119.48 Aligned_cols=111 Identities=27% Similarity=0.314 Sum_probs=49.3
Q ss_pred ccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCcc
Q 037302 255 VGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLR 334 (408)
Q Consensus 255 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 334 (408)
+..+++|++|++++|.+.. .+ .+..+++|++|++++|.++ ..+..+..+++|++|++++|.+.+. ..+..+++|+
T Consensus 44 ~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l--~~~~~l~~L~ 118 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--SGIEKLVNLR 118 (198)
T ss_dssp HHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCH--HHHHHHHHSS
T ss_pred HhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcC--CccccCCCCC
Confidence 3344444444444444432 12 3444444444444444444 2233333344455555555544432 1344445555
Q ss_pred EEEcCCccccccCC-cCCCCCCCccEEeCCCCccCCc
Q 037302 335 QLDLSHNFINGTIP-SQLGYIPNISAVDLSKNNLSGV 370 (408)
Q Consensus 335 ~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~ 370 (408)
.|++++|++++..+ ..+..+++|+.|++++|++.+.
T Consensus 119 ~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp EEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred EEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 55555555543211 2344455555555555555443
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.20 E-value=3.1e-13 Score=122.78 Aligned_cols=166 Identities=20% Similarity=0.175 Sum_probs=115.3
Q ss_pred ccccCeEEccCCcCCCCCCcc----cC-CCCCccEEEccCCcccccCCccc-cCCCCCCEEeCCCCcccccCCccc----
Q 037302 210 LNLGGKLDLSHNRLDSPIPPT----IG-NLTNLTSLDLSSNQLSGLLPREV-GNLKYLDSLSLDGNNLIGSIPPTI---- 279 (408)
Q Consensus 210 ~~~L~~l~l~~~~~~~~~~~~----l~-~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~---- 279 (408)
.+.++.+++++|.+....... +. .+++|++|++++|.+++.....+ ..+++|+.|++++|.+.+.....+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 467889999998876432222 22 23689999999998865433333 245688999999998764422222
Q ss_pred -cCCCCCcEEeCCCCccccCCC----cCCcCCCCCcEEEcCCCccCCcC----CcccccCCCccEEEcCCccccccC---
Q 037302 280 -GYLTNLTSLNLGYNQLSSSIP----PELMNCSQLQNLVLSHNTLSGIV----PPEIGNLTHLRQLDLSHNFINGTI--- 347 (408)
Q Consensus 280 -~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~--- 347 (408)
...++|++|++++|.+++... ..+..+++|++|++++|.+.+.. ...+...++|++|++++|.+++..
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 346789999999998875322 23456788999999999876432 345566788999999999888643
Q ss_pred -CcCCCCCCCccEEeCCCCccCCcCCccc
Q 037302 348 -PSQLGYIPNISAVDLSKNNLSGVVPASV 375 (408)
Q Consensus 348 -~~~~~~~~~L~~L~l~~~~l~~~~~~~~ 375 (408)
+.++..+++|+.|++++|++.......+
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 3344567889999999998876544444
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.12 E-value=6.1e-12 Score=114.28 Aligned_cols=160 Identities=23% Similarity=0.180 Sum_probs=91.5
Q ss_pred CCCCcEEeCCCCcCCCCCccccc-----CCCCCcEEeCCCceecccCcccc-cCCCCCceeecCCccccccCCCcC----
Q 037302 42 LSKLEELALPYNSLTGTIPAEIG-----SLRNLVELDLSNNILNGSIPLEF-GNLKDLDALRLRGNKLDGLIPSSI---- 111 (408)
Q Consensus 42 ~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~i~~~~~~~l---- 111 (408)
.++|++|++++|.++......+. ..++|+.|++++|.+.+.....+ ..+++|++|++++|.+.......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 35677777777766533222222 23567777777776653322222 234567777777776653322222
Q ss_pred -CCCCCCCEEEcCCCeecccC----cccccCCCCCceEeccCCcccCcC----chhhccCCCCCEEEcCCCcCCCC----
Q 037302 112 -GNLTNLTHLDLSLNQLSGRL----PQEVGNLKNLLSLFLDNNNLTGPI----PSTLYHLNQLSNLYLAYNNLVGP---- 178 (408)
Q Consensus 112 -~~l~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~---- 178 (408)
...++|++|++++|.+.... ...+...++|++|++++|.+.+.. ...+..+++|+.|++++|.+...
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 23566777777777665322 223355677777777777665322 33445566777777777766532
Q ss_pred CCccccCCCCCCEEEecCccccc
Q 037302 179 LPKEVGNMKNLDSLLLNRNSLTG 201 (408)
Q Consensus 179 ~~~~~~~~~~L~~L~l~~~~~~~ 201 (408)
+...+...++|++|++++|.+.+
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHHhCCCCCEEeccCCCCCH
Confidence 12233445777777777777654
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.03 E-value=8e-10 Score=99.78 Aligned_cols=105 Identities=21% Similarity=0.206 Sum_probs=86.5
Q ss_pred EEeCCCC-cccccCCccccCCCCCcEEeCCC-CccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCC
Q 037302 263 SLSLDGN-NLIGSIPPTIGYLTNLTSLNLGY-NQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSH 340 (408)
Q Consensus 263 ~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 340 (408)
.++.++. .+.. ++. +..+++|++|+|++ |.+....+..|.++++|+.|+|++|.+.++.+..|..+++|+.|+|++
T Consensus 12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4566666 6663 455 88888999999996 899877777888999999999999999888888889999999999999
Q ss_pred ccccccCCcCCCCCCCccEEeCCCCccCCc
Q 037302 341 NFINGTIPSQLGYIPNISAVDLSKNNLSGV 370 (408)
Q Consensus 341 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 370 (408)
|+++...+..+..++ |+.|++.+|++...
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 999966666666555 99999999998754
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.95 E-value=3.1e-09 Score=95.95 Aligned_cols=104 Identities=22% Similarity=0.250 Sum_probs=88.0
Q ss_pred cEEEccCC-cccccCCccccCCCCCCEEeCCC-CcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcC
Q 037302 238 TSLDLSSN-QLSGLLPREVGNLKYLDSLSLDG-NNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLS 315 (408)
Q Consensus 238 ~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 315 (408)
..++.+++ .++. .+. +..+++|+.|++++ +.+....+..+..+++|++|+|++|.++...+..|.++++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 34677777 6764 555 88889999999996 88887777788999999999999999998888889999999999999
Q ss_pred CCccCCcCCcccccCCCccEEEcCCcccc
Q 037302 316 HNTLSGIVPPEIGNLTHLRQLDLSHNFIN 344 (408)
Q Consensus 316 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 344 (408)
+|++..+.+..+..++ |+.|++.+|.+.
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 9999877666666665 999999999887
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.85 E-value=5.8e-10 Score=100.42 Aligned_cols=57 Identities=25% Similarity=0.220 Sum_probs=26.4
Q ss_pred ccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCcccc--CCCCCCEEeCC
Q 037302 208 GYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVG--NLKYLDSLSLD 267 (408)
Q Consensus 208 ~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~ 267 (408)
..+|.|+.|.++++.-.. .+. +. .++|++|.+..|.+.......++ .+|+|+.|+++
T Consensus 169 ~~~P~L~~L~L~g~~~l~-l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNLS-IGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HTCTTCCEEEEECCBTCB-CCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred hcCCCCcEEEEeCCCCce-ecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 444555555555442111 111 22 45666666666555433222222 45666666653
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.73 E-value=9.4e-09 Score=92.53 Aligned_cols=137 Identities=18% Similarity=0.172 Sum_probs=69.0
Q ss_pred ccCCCCCcEEeCCCceecccCcccccCCCCCceeecCCccccccCCCcC--CCCCCCCEEEcCCC--eec-c----cCcc
Q 037302 63 IGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSI--GNLTNLTHLDLSLN--QLS-G----RLPQ 133 (408)
Q Consensus 63 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l--~~l~~L~~L~l~~~--~~~-~----~~~~ 133 (408)
+..+++|+.|.++++.-. .++. + .+++|+.|.+..+.+.......+ ..+++|++|+++.+ ... . .+..
T Consensus 168 l~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~ 244 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP 244 (362)
T ss_dssp HHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred HhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence 345566666666554211 1111 2 25666666666555432211222 24566666665321 110 0 0011
Q ss_pred cc--cCCCCCceEeccCCcccCcCchhhc---cCCCCCEEEcCCCcCCCCC----CccccCCCCCCEEEecCcccccc
Q 037302 134 EV--GNLKNLLSLFLDNNNLTGPIPSTLY---HLNQLSNLYLAYNNLVGPL----PKEVGNMKNLDSLLLNRNSLTGP 202 (408)
Q Consensus 134 ~~--~~l~~L~~L~l~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~ 202 (408)
.+ ..+|+|++|++.+|.+.+.....+. .+++|++|+++.|.+.... ...+..+++|+.|+++.|.+.+.
T Consensus 245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322 (362)
T ss_dssp GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence 12 2367777777777665532222222 3667888888777665321 11223467788888887776543
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.58 E-value=4.1e-09 Score=83.46 Aligned_cols=84 Identities=7% Similarity=0.011 Sum_probs=51.6
Q ss_pred CCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCc-cCCcCCccccc----CCCccEEEcCCc-cccccCCcCCCCCCC
Q 037302 283 TNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNT-LSGIVPPEIGN----LTHLRQLDLSHN-FINGTIPSQLGYIPN 356 (408)
Q Consensus 283 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~----~~~L~~L~l~~~-~~~~~~~~~~~~~~~ 356 (408)
..|+.|++++|.+++.....+.+|++|++|+|++|. +++.....+.. +++|++|++++| .+++.....+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 356666666666665555556666777777777764 54433334443 235777777777 366655555666677
Q ss_pred ccEEeCCCCc
Q 037302 357 ISAVDLSKNN 366 (408)
Q Consensus 357 L~~L~l~~~~ 366 (408)
|+.|++++|+
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 7777777774
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.43 E-value=1.5e-08 Score=82.31 Aligned_cols=112 Identities=13% Similarity=0.132 Sum_probs=53.3
Q ss_pred cCCCCCCEEeCCCC-ccccc----CCccccCCCCCcEEeCCCCccccCCC----cCCcCCCCCcEEEcCCCccCCc----
Q 037302 256 GNLKYLDSLSLDGN-NLIGS----IPPTIGYLTNLTSLNLGYNQLSSSIP----PELMNCSQLQNLVLSHNTLSGI---- 322 (408)
Q Consensus 256 ~~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~---- 322 (408)
...+.|++|++++| .+.+. ....+...++|++|++++|.+++... ..+...+.|++|++++|.+.+.
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 33444555555444 33321 12223344555555555555543221 1223345556666666555432
Q ss_pred CCcccccCCCccEEEc--CCccccccC----CcCCCCCCCccEEeCCCCcc
Q 037302 323 VPPEIGNLTHLRQLDL--SHNFINGTI----PSQLGYIPNISAVDLSKNNL 367 (408)
Q Consensus 323 ~~~~~~~~~~L~~L~l--~~~~~~~~~----~~~~~~~~~L~~L~l~~~~l 367 (408)
...++...++|++|++ ++|.+.+.. ...+...++|+.|++++|++
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 1234444556666666 556665432 22334446666666666655
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.35 E-value=5.1e-08 Score=77.20 Aligned_cols=82 Identities=11% Similarity=0.143 Sum_probs=38.4
Q ss_pred CccEEEccCCcccccCCccccCCCCCCEEeCCCCc-ccccCCccccC----CCCCcEEeCCCCc-cccCCCcCCcCCCCC
Q 037302 236 NLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNN-LIGSIPPTIGY----LTNLTSLNLGYNQ-LSSSIPPELMNCSQL 309 (408)
Q Consensus 236 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~----~~~L~~L~l~~~~-~~~~~~~~~~~~~~L 309 (408)
.|++|++++|.+++.....+..+++|+.|++++|. +++.....+.. +++|++|++++|. +++.....+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 46666666666555544555555666666666654 33222222222 1244444444442 433333333344444
Q ss_pred cEEEcCCC
Q 037302 310 QNLVLSHN 317 (408)
Q Consensus 310 ~~L~l~~~ 317 (408)
++|++++|
T Consensus 142 ~~L~L~~c 149 (176)
T 3e4g_A 142 KYLFLSDL 149 (176)
T ss_dssp CEEEEESC
T ss_pred CEEECCCC
Confidence 44444444
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.34 E-value=5.6e-08 Score=78.94 Aligned_cols=115 Identities=13% Similarity=0.131 Sum_probs=69.3
Q ss_pred hhccCCCCcEEeCCCC-cCCCC----CcccccCCCCCcEEeCCCceeccc----CcccccCCCCCceeecCCcccccc--
Q 037302 38 EIGALSKLEELALPYN-SLTGT----IPAEIGSLRNLVELDLSNNILNGS----IPLEFGNLKDLDALRLRGNKLDGL-- 106 (408)
Q Consensus 38 ~~~~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~i~~~-- 106 (408)
.+...++|++|++++| .+.+. +...+...++|++|++++|.+.+. +...+...++|++|++++|.+...
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3455666777777666 55422 223344556677777777766542 223334456677777777766532
Q ss_pred --CCCcCCCCCCCCEEEc--CCCeecccC----cccccCCCCCceEeccCCccc
Q 037302 107 --IPSSIGNLTNLTHLDL--SLNQLSGRL----PQEVGNLKNLLSLFLDNNNLT 152 (408)
Q Consensus 107 --~~~~l~~l~~L~~L~l--~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~ 152 (408)
....+...++|++|++ ++|.+.... ...+...+.|++|++++|.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2344556677888888 667765432 234455678888888887765
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.95 E-value=7.5e-06 Score=69.83 Aligned_cols=113 Identities=24% Similarity=0.215 Sum_probs=71.2
Q ss_pred cccccccCCCCCCcE--EEcCCCccc---cccchhhccCCCCcEEeCCCCcCCCC--CcccccCCCCCcEEeCCCceecc
Q 037302 9 ELSQLNFTCFPNLES--IIIPYTLLS---GRIPSEIGALSKLEELALPYNSLTGT--IPAEIGSLRNLVELDLSNNILNG 81 (408)
Q Consensus 9 ~~~~~~~~~~~~L~~--L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~ 81 (408)
.++-..|...|.|+. ++++.+... +........+++|++|+|++|.++.. ++..+..+++|+.|+|++|.+.+
T Consensus 131 ~LdLs~l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~ 210 (267)
T 3rw6_A 131 ALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS 210 (267)
T ss_dssp EEECTTGGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS
T ss_pred ccCHHHcCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC
Confidence 344455666677766 555555322 11222235678888889988888753 23455678888899998888874
Q ss_pred c-CcccccCCCCCceeecCCccccccCC-------CcCCCCCCCCEEEc
Q 037302 82 S-IPLEFGNLKDLDALRLRGNKLDGLIP-------SSIGNLTNLTHLDL 122 (408)
Q Consensus 82 ~-~~~~~~~l~~L~~L~l~~~~i~~~~~-------~~l~~l~~L~~L~l 122 (408)
. ....+..+ +|++|.+.+|.+....+ ..+..+++|+.|+-
T Consensus 211 ~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 211 ERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp GGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred chhhhhcccC-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 3 11223333 88889998888764333 23556788887763
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.93 E-value=5.8e-06 Score=70.52 Aligned_cols=63 Identities=29% Similarity=0.328 Sum_probs=29.7
Q ss_pred CCCCCcEEeCCCCccccC--CCcCCcCCCCCcEEEcCCCccCCcCCcccccCC--CccEEEcCCccccc
Q 037302 281 YLTNLTSLNLGYNQLSSS--IPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLT--HLRQLDLSHNFING 345 (408)
Q Consensus 281 ~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~ 345 (408)
.+++|+.|++++|.++.. .+..+..+++|+.|+|++|.+.+. ..+..++ +|++|++++|++.+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGG
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcc
Confidence 345555555555555431 112233455555555555555433 1222222 55555555555554
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.81 E-value=0.00018 Score=57.94 Aligned_cols=38 Identities=21% Similarity=0.306 Sum_probs=16.1
Q ss_pred CCccEEEccCC-ccccc----CCccccCCCCCCEEeCCCCccc
Q 037302 235 TNLTSLDLSSN-QLSGL----LPREVGNLKYLDSLSLDGNNLI 272 (408)
Q Consensus 235 ~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~~~ 272 (408)
+.|++|+++++ .+.+. ...++..-..|+.|++++|.+.
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~ig 83 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS 83 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCC
Confidence 44555555543 33321 1222233344555555554443
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.71 E-value=0.00034 Score=56.39 Aligned_cols=110 Identities=9% Similarity=0.073 Sum_probs=48.2
Q ss_pred CCCCCCEEeCCCC-ccccc----CCccccCCCCCcEEeCCCCccccCCCcC----CcCCCCCcEEEcCCCccCCcC----
Q 037302 257 NLKYLDSLSLDGN-NLIGS----IPPTIGYLTNLTSLNLGYNQLSSSIPPE----LMNCSQLQNLVLSHNTLSGIV---- 323 (408)
Q Consensus 257 ~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~---- 323 (408)
.-+.|++|+++++ .+.+. +..++..-..|+.|+|++|.+.+..... +...+.|++|+|+.|.+....
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3345555555543 33221 1223334455555555555554332222 223455555555555554221
Q ss_pred CcccccCCCccEEEcCCcc---cccc----CCcCCCCCCCccEEeCCCCc
Q 037302 324 PPEIGNLTHLRQLDLSHNF---INGT----IPSQLGYIPNISAVDLSKNN 366 (408)
Q Consensus 324 ~~~~~~~~~L~~L~l~~~~---~~~~----~~~~~~~~~~L~~L~l~~~~ 366 (408)
.+++..-+.|++|+++++. +.+. +..++..-++|+.|+++.|.
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 1233333445555555432 2211 12233334555555555443
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.87 E-value=0.023 Score=42.44 Aligned_cols=35 Identities=29% Similarity=0.227 Sum_probs=15.0
Q ss_pred CCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCc
Q 037302 284 NLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNT 318 (408)
Q Consensus 284 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 318 (408)
+|++|+|++|.++......|..+++|+.|.|++|.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 34444444444443333334444444444444443
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.80 E-value=0.02 Score=42.79 Aligned_cols=36 Identities=31% Similarity=0.391 Sum_probs=19.9
Q ss_pred CCcEEEcCCCccCCcCCcccccCCCccEEEcCCccc
Q 037302 308 QLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFI 343 (408)
Q Consensus 308 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 343 (408)
+|++|+|++|.++.+....|..+++|+.|++.+|+.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 455555555555555455555555555555555544
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=93.40 E-value=0.067 Score=37.67 Aligned_cols=49 Identities=12% Similarity=0.093 Sum_probs=36.2
Q ss_pred CCCcccccccccCCCCCCcEEEcCCCccccccchhhccCCCCcEEeCCCC
Q 037302 4 NGNAAELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYN 53 (408)
Q Consensus 4 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 53 (408)
+..|+.|+..+|.+|..|+.+.+... +...-..+|..|.+|+.+.+.+.
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 45789999999999999999999754 22233455777788888777654
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=90.66 E-value=0.3 Score=34.26 Aligned_cols=46 Identities=11% Similarity=0.110 Sum_probs=26.8
Q ss_pred cccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCc
Q 037302 295 LSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHN 341 (408)
Q Consensus 295 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 341 (408)
++.+...+|.+|.+|+.+.+-.. ++.+...+|.+|.+|+.+.+.+.
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 44444555666666666666553 33355566666666666666554
Done!